RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3121
         (190 letters)



>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit,
          transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
          Length = 167

 Score = 32.5 bits (75), Expect = 0.041
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 8  LSFSVNDPRGYVDKAMHALSSTIVEINVEVLEHSNIGLVS 47
          ++F+V   + +  +A+ AL   + EI  E +   +I  VS
Sbjct: 62 MAFTV--KKDFAQEALEALEPVLAEIGGEAILRPDIAKVS 99


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.18
 Identities = 4/18 (22%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 137 RRPVRKRDGSFN-YSPDT 153
           ++ ++K   S   Y+ D+
Sbjct: 19  KQALKKLQASLKLYADDS 36



 Score = 25.7 bits (55), Expect = 8.5
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 21/47 (44%)

Query: 34 NVEVLEHSNIGLVSQATTYALLKIAQPREILALVD-GPSIQFQETIK 79
           ++ L+ S             LK+          D  P++  + T++
Sbjct: 21 ALKKLQAS-------------LKLYAD-------DSAPALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.63
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 24/87 (27%)

Query: 5    LAKLSFSVNDPRGYVDK------AMHALSSTIVEINVEVLEHSNIGLVSQATTYA---LL 55
                +F     +G +        A+  +     E     L+    GL+    T+A   L 
Sbjct: 1714 STSYTF--RSEKGLLSATQFTQPALTLMEKAAFE----DLKSK--GLIPADATFAGHSL- 1764

Query: 56   KIAQPREILALV-DGPSIQFQETIKLL 81
                  E  AL      +  +  ++++
Sbjct: 1765 -----GEYAALASLADVMSIESLVEVV 1786



 Score = 26.9 bits (59), Expect = 6.0
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 129  WHFMNQRRRRPVRKRDGSFNYSPDTYCTKYDETTGLCPDGDDPDTYCTKYDETTGLCPDG 188
             HF  ++ +R +R+     NYS   + T  D          + +      + +T      
Sbjct: 1674 IHFGGEKGKR-IRE-----NYSAMIFETIVDGKLKTEKIFKEIN------EHSTSYTFRS 1721

Query: 189  DE 190
            ++
Sbjct: 1722 EK 1723


>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
          nucleotidyltransferase, metabolism; HET: GUD; 2.00A
          {Corynebacterium glutamicum atcc 13032}
          Length = 323

 Score = 28.7 bits (65), Expect = 1.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 58 AQPREILALVDGPSIQF 74
            P+E+L +VD P I+ 
Sbjct: 32 TVPKELLPVVDTPGIEL 48


>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
          carbohydrate, pyrophosphorylase; 1.95A {Escherichia
          coli}
          Length = 302

 Score = 28.6 bits (65), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 58 AQPREILALVDGPSIQF 74
          A P+E+L LVD P IQ+
Sbjct: 28 AIPKEMLPLVDKPLIQY 44


>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
          pyrophosphorylase, nucleotidyltransferase; HET: G1P;
          2.65A {Sphingomonas elodea}
          Length = 297

 Score = 28.2 bits (64), Expect = 1.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 58 AQPREILALVDGPSIQF 74
          A P+E+L +VD P IQ+
Sbjct: 34 AMPKEMLPVVDRPLIQY 50


>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
          {Helicobacter pylori} PDB: 3juj_A*
          Length = 281

 Score = 28.2 bits (64), Expect = 1.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 58 AQPREILALVDGPSIQF 74
            P+E+L +VD P IQ+
Sbjct: 22 TIPKEMLPIVDKPLIQY 38


>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
           aldolase, structural genomics, biology; 1.35A
           {Unidentified}
          Length = 412

 Score = 27.2 bits (61), Expect = 3.4
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 120 QHRPFTCFHWHFMNQRRRRPVRKRDGSF 147
           +H P+T    H   Q    PV  +D + 
Sbjct: 377 RHTPYTGERLH--LQMGEHPVDVKDLAP 402


>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication,
           transf; HET: DNA; 2.00A {Aquifex aeolicus}
          Length = 407

 Score = 26.4 bits (59), Expect = 6.1
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 166 PDGDDPDTYCTKY 178
           P+G DPD +  ++
Sbjct: 324 PEGYDPDEFIKEF 336


>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside
           polyph protein-ligand complex, transferase; HET: DNA
           ATP; 2.00A {Staphylococcus aureus} PDB: 4edk_A* 4edr_A*
           4edt_A* 4edv_A* 4ee1_A*
          Length = 329

 Score = 26.1 bits (58), Expect = 7.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 166 PDGDDPDTYCTKY 178
           P G DPD Y  KY
Sbjct: 232 PSGMDPDEYIGKY 244


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,986,162
Number of extensions: 168672
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 17
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)