BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3123
(585 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|187468484|emb|CAM97374.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 854
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/634 (63%), Positives = 455/634 (71%), Gaps = 110/634 (17%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M+DELPILK IL G+ +YHNAPVRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DE
Sbjct: 1 MDDELPILKGILNGDVKYHNAPVRFGRVPKREKARILAAMQQSSNSRSQEKAVAAELEDE 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
QR+LSTVVRAHLDTC FT +K+EPML RAR+ P+YTACP TLACPLNPN PL GQQELL
Sbjct: 61 QRLLSTVVRAHLDTCDFTREKVEPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELL 120
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
QDFS+RFSP IR VVEFAKRIPGF+LL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMI
Sbjct: 121 QDFSKRFSPAIRGVVEFAKRIPGFALLPQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMI 180
Query: 182 CLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+VL R++IH SSNARFLMDSMFDFAERLN L LSD E+GLF S+VVI+P R GLRN
Sbjct: 181 CLNGQVLKREAIHNSSNARFLMDSMFDFAERLNSLRLSDAEVGLFCSVVVIAPDRPGLRN 240
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
EL+ERM+GKL+ L V++QNHP N+C EL+ +PDLRTLN LHSEKL+AF+MTEQQ
Sbjct: 241 TELIERMQGKLKAALQMVVSQNHPGHANICHELMKKIPDLRTLNTLHSEKLLAFKMTEQQ 300
Query: 301 QQLAAQQQQ--W----HGEDNSKSPTG----SSWSDVTMEE-VKSPLGSVSSTESVCSNE 349
Q QQQQ W E NSKSP G SS SDVTM+E VKSPLGSVSSTESVCS E
Sbjct: 301 QLQQQQQQQHLWGTSPEEESNSKSPAGSSSWSSSSDVTMDEAVKSPLGSVSSTESVCSGE 360
Query: 350 VATLNEYTSTH------AQNAPLLAATLAGAQCPHRNRANSGSTTDGD------------ 391
VA+L EY H A +APLLAATLAG CPHR+RANSGST+ D
Sbjct: 361 VASLTEYQPNHHPVSHQASSAPLLAATLAGGICPHRHRANSGSTSGDDDMSGLPHHSHHG 420
Query: 392 --------------------RRF-RKLDSPTDSGIESGTEKIEK-------HASAPTSVC 423
RF RKLDSP+DSGIESGTEK++K SAPTSVC
Sbjct: 421 LTITAVNPPSRQQPLMPQHHHRFQRKLDSPSDSGIESGTEKLDKLTSGGGSTGSAPTSVC 480
Query: 424 SSPRSSFEEKD----------FNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRAL 472
SSPRSS E+KD +H++DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRA
Sbjct: 481 SSPRSSLEDKDEEKHHNGSSGSSHIDDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRAC 540
Query: 473 RQKDSAEAEP-----------------------LHPSLASSH------------------ 491
R KDSAEAEP LH L S++
Sbjct: 541 RNKDSAEAEPMIVHVSPPPPSHPVPPQHHSSPQLHLHLTSNNHQSQSSTSSTSSSLSSTH 600
Query: 492 SMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSP 525
S LAKSLME PRMT +QLKRT+I+HNYIMR DSP
Sbjct: 601 STLAKSLMESPRMTAEQLKRTDIIHNYIMRADSP 634
>gi|307176559|gb|EFN66046.1| Nuclear hormone receptor E75 [Camponotus floridanus]
Length = 708
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/608 (64%), Positives = 444/608 (73%), Gaps = 89/608 (14%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M DELPILK IL G YHNAPVRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DE
Sbjct: 1 MGDELPILKGILNGVVNYHNAPVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDE 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
QR+L+TVVRAHLDTC FT DK+ P+L RARE P YTACP TLACPLNPN PL GQQELL
Sbjct: 61 QRLLATVVRAHLDTCDFTRDKVAPILARARETPNYTACPPTLACPLNPNPQPLTGQQELL 120
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
QDFS+RFSP IR VVEFAKRIPGFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMI
Sbjct: 121 QDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMI 180
Query: 182 CLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+VL R+SIH SSNARFLMDSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN
Sbjct: 181 CLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRN 240
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
ELVERM KL N L VL QNHP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQ
Sbjct: 241 TELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQ 300
Query: 301 QQL------------------AAQQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSS 341
QQL A QQ W E+ + GS+ SDVT++E VKSPLGSVSS
Sbjct: 301 QQLQAQQQHQQQQQQQTHVITAQQQSHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSVSS 359
Query: 342 TESVCSNEVATLNEY------TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR--- 392
TES CS EVA+L EY + HA +APLLAATLAG CPHR RANSGST+ GD
Sbjct: 360 TESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELH 419
Query: 393 --------------RFRKLDSPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEK 433
RFRKLDSP+DSGIESGTEK +K +SAPTSVCSSPRS +E
Sbjct: 420 RATMSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKE- 478
Query: 434 DFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP---------- 482
VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALRQKDSAEAEP
Sbjct: 479 ----VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVVVQHTQSQ 534
Query: 483 --LHPS----------------------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNY 518
LH + L+S+HS LA+SLMEGPRMT +QLKRT+I+HNY
Sbjct: 535 LHLHLTSPPARSPPTQTAQPQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNY 594
Query: 519 IMRTDSPP 526
IMR ++ P
Sbjct: 595 IMRGEASP 602
>gi|322795547|gb|EFZ18243.1| hypothetical protein SINV_11306 [Solenopsis invicta]
Length = 761
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/608 (64%), Positives = 446/608 (73%), Gaps = 89/608 (14%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M DELPILK IL G YHNAPVRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DE
Sbjct: 1 MGDELPILKGILNGVVNYHNAPVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDE 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
QR+L+TVVRAH+DTC FT DK+ P+L RARE P YTACP TLACPLNPN PL GQQELL
Sbjct: 61 QRLLTTVVRAHIDTCDFTRDKVAPILARARETPNYTACPPTLACPLNPNPQPLTGQQELL 120
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
QDFS+RFSP IR VVEFAKRIPGF+LL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMI
Sbjct: 121 QDFSKRFSPAIRGVVEFAKRIPGFNLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMI 180
Query: 182 CLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+VL R+SIH SSNARFLMDSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN
Sbjct: 181 CLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRN 240
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
ELVERM KL N L VL QNHP+ ++ EL+ +PDL+TLN LHSEKL+AF+MTEQQ
Sbjct: 241 TELVERMHNKLRNALQTVLAQNHPQHPDILHELLKKIPDLKTLNTLHSEKLLAFKMTEQQ 300
Query: 301 QQLAA------------------QQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSS 341
QQL A QQ W E+ + GS+ SDVT++E VKSPLGSVSS
Sbjct: 301 QQLQAQQQHQQQQQQTQHVITPQQQPHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSVSS 359
Query: 342 TESVCSNEVATLNEY------TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGD---- 391
TES CS EVA+L EY + HA +APLLAATLAG CPHR RANSGST+ GD
Sbjct: 360 TESTCSGEVASLTEYHHVAPASGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELH 419
Query: 392 -------------RRFRKLDSPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEK 433
R FRKLDSP+DSGIESGTEK +K +SAPTSVCSSPRS E+K
Sbjct: 420 RSTMSKTPQPPQCRSFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRS--EDK 477
Query: 434 DFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP---------- 482
+ VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALRQKDSAEAEP
Sbjct: 478 E---VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVVVQHTQSQ 534
Query: 483 --LHPS----------------------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNY 518
LH + L+S+HS LA+SLMEGPRMT +QLKRT+I+HNY
Sbjct: 535 LHLHLTSPPARSPPTQTAQSQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNY 594
Query: 519 IMRTDSPP 526
IMR ++ P
Sbjct: 595 IMRGEASP 602
>gi|340721158|ref|XP_003398992.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
3 [Bombus terrestris]
Length = 757
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/609 (64%), Positives = 446/609 (73%), Gaps = 93/609 (15%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M DELPILK IL G YHNAPVRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DE
Sbjct: 1 MGDELPILKGILNGVVNYHNAPVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDE 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
QR+L+TVV+AHLDTC FT DK+ P+L RARE P YTACP TLACPLNPN PL GQQELL
Sbjct: 61 QRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELL 120
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
QDFS+RFSP IR VVEFAKRIPGFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMI
Sbjct: 121 QDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMI 180
Query: 182 CLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+VL R+SIH SSNARFLMDSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN
Sbjct: 181 CLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRN 240
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
ELVERM KL N L VL QNHP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQ
Sbjct: 241 TELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQ 300
Query: 301 QQLAA--------------------QQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSV 339
QQ+ A QQQ W E+ + GS+ SDVT++E VKSPLGSV
Sbjct: 301 QQMQAQQQHQQQQQQTQHVINAQQPQQQHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSV 359
Query: 340 SSTESVCSNEVATLNEY------TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR- 392
SSTES EVA+L EY + HA +APLLAATLAG CPHR RANSGST+ GD
Sbjct: 360 SSTESA---EVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDE 416
Query: 393 ----------------RFRKLDSPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFE 431
RFRKLDSP+DSGIESGTEK +K +SAPTSVCSSPRS E
Sbjct: 417 LHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRS--E 474
Query: 432 EKDFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP-------- 482
+K+ VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALRQKDSAEAEP
Sbjct: 475 DKE---VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQ 531
Query: 483 --LH----------PS-------------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHN 517
LH PS L+S+HS LA+SLMEGPRMT +QLKRT+I+HN
Sbjct: 532 SQLHLHLTSPPARSPSNQVQAQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHN 591
Query: 518 YIMRTDSPP 526
YIMR ++ P
Sbjct: 592 YIMRGEASP 600
>gi|270014294|gb|EFA10742.1| E75 nuclear receptor [Tribolium castaneum]
Length = 897
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/680 (60%), Positives = 477/680 (70%), Gaps = 113/680 (16%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M +ELPILK IL G YHNAPVRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DE
Sbjct: 235 MGEELPILKGILNGVVEYHNAPVRFGRVPKREKARILAAMQQSSNSRSLEKAVAAELEDE 294
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
QR+L+TVVRAH+DTC FT +K+EPML RARE P+YTACP TLACPLNPN PL GQQELL
Sbjct: 295 QRLLATVVRAHIDTCDFTREKVEPMLARAREQPSYTACPPTLACPLNPNPQPLTGQQELL 354
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
QDFS+RFSP IR VVEFAKRIPGFSLL DDQVTLLKAGVFEVLLVRLACMFD+QT+SMI
Sbjct: 355 QDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDTQTSSMI 414
Query: 182 CLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+VL RDSIH SSNARFLMDSMFDFAER+N L LSD EIGLF S+VVI+P R GLRN
Sbjct: 415 CLNGQVLKRDSIHNSSNARFLMDSMFDFAERMNALRLSDAEIGLFCSVVVIAPDRPGLRN 474
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
EL+E+M+ KL+ L V+NQNH Q ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQ
Sbjct: 475 TELIEKMQNKLKAALQMVVNQNHHGQTHIIDELMKKVPDLRTLNTLHSEKLLAFKMTEQQ 534
Query: 301 QQLAAQQQQ-WH-------GEDNSKSPTGSSWSDVTMEEVKSPLGSVSSTESVCSNEVAT 352
Q + Q QQ W+ + + + SS SDVTM+E KSPLGSVSSTES+
Sbjct: 535 QMMQQQHQQLWNTPMEEESSSKSPTASSWSSSSDVTMDEAKSPLGSVSSTESI------- 587
Query: 353 LNEYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR-------------------- 392
++ NAPLLAATL+G CPHR+RANSGST+ GD
Sbjct: 588 ------SNVTNAPLLAATLSGGLCPHRHRANSGSTSSGDDELAATSHLIHNGLTITPVAR 641
Query: 393 -----RFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH-VEDMPVLKR 446
RFRKLDSP+DSGIESGTEK++KH SAPTS+CSSPRSS EE NH VE+MPVLKR
Sbjct: 642 PHTHPRFRKLDSPSDSGIESGTEKVDKH-SAPTSLCSSPRSSMEE---NHIVEEMPVLKR 697
Query: 447 ILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP--------------LHPSLASSH 491
+LQAPPL DT+ LMDEAYKPHKKFRALR KDSAEAEP SL+S+H
Sbjct: 698 VLQAPPLYDTNLLMDEAYKPHKKFRALRNKDSAEAEPAVVMSPQPQVQHQQQQSSLSSTH 757
Query: 492 SMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHS---------SSVIKP 542
S LAKSLMEGPRMT +Q+KRT+I+HNYIMR + P A P + + +++P
Sbjct: 758 STLAKSLMEGPRMTAEQMKRTDIIHNYIMRDEHPVGAASPMVTAAPTSCPYKVNNGLLQP 817
Query: 543 APPATVTSNA----------------------------------LLELQV--AATSQPLN 566
A +V + ++ELQV A + QPLN
Sbjct: 818 AWATSVITTTGRHQQQCSSPQEYNRMYLQSPHSTSPAPPSSPLKIVELQVDIADSQQPLN 877
Query: 567 LSKKTPPPSPR-LSVVSLEA 585
LSKK+P PSPR + VV+LE
Sbjct: 878 LSKKSPSPSPRPMKVVTLEV 897
>gi|189240947|ref|XP_971362.2| PREDICTED: similar to ecdysone inducible protein 75 [Tribolium
castaneum]
Length = 771
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/665 (60%), Positives = 472/665 (70%), Gaps = 107/665 (16%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DEQR+L+TVVRAH+DTC FT +K+
Sbjct: 111 VRFGRVPKREKARILAAMQQSSNSRSLEKAVAAELEDEQRLLATVVRAHIDTCDFTREKV 170
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
EPML RARE P+YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 171 EPMLARAREQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 230
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFD+QT+SMICLNG+VL RDSIH SSNARFLM
Sbjct: 231 GFSLLAQDDQVTLLKAGVFEVLLVRLACMFDTQTSSMICLNGQVLKRDSIHNSSNARFLM 290
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD EIGLF S+VVI+P R GLRN EL+E+M+ KL+ L V+NQN
Sbjct: 291 DSMFDFAERMNALRLSDAEIGLFCSVVVIAPDRPGLRNTELIEKMQNKLKAALQMVVNQN 350
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQ-WH-------GED 314
H Q ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQQ + Q QQ W+
Sbjct: 351 HHGQTHIIDELMKKVPDLRTLNTLHSEKLLAFKMTEQQQMMQQQHQQLWNTPMEEESSSK 410
Query: 315 NSKSPTGSSWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEY-------TSTHAQNAPLL 367
+ + + SS SDVTM+E KSPLGSVSSTES+CS+E+ +LN+Y S++ NAPLL
Sbjct: 411 SPTASSWSSSSDVTMDEAKSPLGSVSSTESMCSSEITSLNDYHQLGQHHVSSNVTNAPLL 470
Query: 368 AATLAGAQCPHRNRANSGSTTDGDR-------------------------RFRKLDSPTD 402
AATL+G CPHR+RANSGST+ GD RFRKLDSP+D
Sbjct: 471 AATLSGGLCPHRHRANSGSTSSGDDELAATSHLIHNGLTITPVARPHTHPRFRKLDSPSD 530
Query: 403 SGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH-VEDMPVLKRILQAPPL-DTSSLMD 460
SGIESGTEK++KH SAPTS+CSSPRSS EE NH VE+MPVLKR+LQAPPL DT+ LMD
Sbjct: 531 SGIESGTEKVDKH-SAPTSLCSSPRSSMEE---NHIVEEMPVLKRVLQAPPLYDTNLLMD 586
Query: 461 EAYKPHKKFRALRQKDSAEAEP--------------LHPSLASSHSMLAKSLMEGPRMTP 506
EAYKPHKKFRALR KDSAEAEP SL+S+HS LAKSLMEGPRMT
Sbjct: 587 EAYKPHKKFRALRNKDSAEAEPAVVMSPQPQVQHQQQQSSLSSTHSTLAKSLMEGPRMTA 646
Query: 507 DQLKRTEIVHNYIMRTDSPPSAYFPRSWHS---------SSVIKPAPPATVTSNA----- 552
+Q+KRT+I+HNYIMR + P A P + + +++PA +V +
Sbjct: 647 EQMKRTDIIHNYIMRDEHPVGAASPMVTAAPTSCPYKVNNGLLQPAWATSVITTTGRHQQ 706
Query: 553 -----------------------------LLELQV--AATSQPLNLSKKTPPPSPR-LSV 580
++ELQV A + QPLNLSKK+P PSPR + V
Sbjct: 707 QCSSPQEYNRMYLQSPHSTSPAPPSSPLKIVELQVDIADSQQPLNLSKKSPSPSPRPMKV 766
Query: 581 VSLEA 585
V+LE
Sbjct: 767 VTLEV 771
>gi|144687066|gb|ABP02024.1| ecdysone response nuclear receptor E75A [Oncopeltus fasciatus]
Length = 690
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/589 (65%), Positives = 450/589 (76%), Gaps = 42/589 (7%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQSTN+KC EKA+AAEL+D+ R+L TVVRAHLDTC FT DK+
Sbjct: 117 VRFGRVPKREKARILAAMQQSTNSKCQEKAVAAELEDDGRLLKTVVRAHLDTCDFTRDKV 176
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PM+ RARE P++TA P TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 177 APMILRARECPSFTASPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 236
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GFSLL +DQVTLLKAGVFEVLLVRLACMFD+Q NSMICLNG+VL RDSIHS SNARFLM
Sbjct: 237 GFSLLSQEDQVTLLKAGVFEVLLVRLACMFDTQNNSMICLNGQVLKRDSIHSGSNARFLM 296
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L L+D EIGLFSSIVVI+P R GLRN +L+E+M+ KL L ++ QN
Sbjct: 297 DSMFDFAERLNSLKLTDPEIGLFSSIVVIAPDRPGLRNTDLIEKMQNKLRAGLHMMIAQN 356
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWH---GEDNSKSP 319
HP Q L EL+ +PDLRTLN LHSEKL+AF+MTEQ Q Q + W GED SKSP
Sbjct: 357 HPSQPGLAQELMKKIPDLRTLNTLHSEKLLAFKMTEQHQLAEQQHEMWGSMVGEDESKSP 416
Query: 320 -TGSSWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPH 378
T SS S++ ME V P GSVSSTES+CS EVA+LN+ S+H AP A+LAG CP
Sbjct: 417 GTWSSGSELGMEXVXXPWGSVSSTESMCSGEVASLNDXPSSHXAXAPFFVASLAG--CPL 474
Query: 379 RNRANSGSTTDGDRRFRKLDSPTDSGIESGTEKIEK-HASAPTSVCSSPRSSFEEKDFNH 437
R+R + RFRKLDSP+DSGIESGTEK++K +SAPTSVCSSPRSS E+K+ +H
Sbjct: 475 RHRED----MKAPHRFRKLDSPSDSGIESGTEKVDKLTSSAPTSVCSSPRSSVEDKEDHH 530
Query: 438 VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAE-PLHPSLASSHSMLA 495
+EDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRAL +K+ +EAE SL+S+HS LA
Sbjct: 531 IEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALIRKEESEAENTSTSSLSSTHSTLA 590
Query: 496 KSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI-------------KP 542
+SLMEGPRMTP+Q+KRT+I+H+YIMR W SVI P
Sbjct: 591 RSLMEGPRMTPEQMKRTDIIHSYIMRGGE-------SCWGQQSVITSTASRGSYVIVNAP 643
Query: 543 APPATV------TSNALLELQVAATSQPLNLSKKTPPPSPRLSVVSLEA 585
PP + ++++L+ELQV +QPLNLSKK+PPPSPR V+SLEA
Sbjct: 644 TPPLYIPSVSPSSTSSLVELQVG--TQPLNLSKKSPPPSPRPKVLSLEA 690
>gi|144687068|gb|ABP02025.1| ecdysone response nuclear receptor E75B [Oncopeltus fasciatus]
Length = 636
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/589 (65%), Positives = 449/589 (76%), Gaps = 42/589 (7%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQSTN+KC EKA+AAEL+D+ R+L TVVRAHLDTC FT DK+
Sbjct: 63 VRFGRVPKREKARILAAMQQSTNSKCQEKAVAAELEDDGRLLKTVVRAHLDTCDFTRDKV 122
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PM+ RARE P++TA P TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 123 APMILRARECPSFTASPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 182
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GFSLL +DQVTLLKAGVFEVLLVRLACMFD+Q NSMICLNG+VL RDSIHS SNARFLM
Sbjct: 183 GFSLLSQEDQVTLLKAGVFEVLLVRLACMFDTQNNSMICLNGQVLKRDSIHSGSNARFLM 242
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L L+D EIGLFSSIVVI+P R GLRN +L+E+M+ KL L ++ QN
Sbjct: 243 DSMFDFAERLNSLKLTDPEIGLFSSIVVIAPDRPGLRNTDLIEKMQNKLRAGLHMMIAQN 302
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWH---GEDNSKSP 319
HP Q L EL+ +PDLRTLN LHSEKL+AF+MTEQ Q Q + W GED SKSP
Sbjct: 303 HPSQPGLAQELMKKIPDLRTLNTLHSEKLLAFKMTEQHQLAEQQHEMWGSMVGEDESKSP 362
Query: 320 -TGSSWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPH 378
T SS S++ ME V P GSVSSTES+CS EVA+LN+ S+H AP A+LAG CP
Sbjct: 363 GTWSSGSELGMEXVXXPWGSVSSTESMCSGEVASLNDXPSSHXAXAPFFVASLAG--CPL 420
Query: 379 RNRANSGSTTDGDRRFRKLDSPTDSGIESGTEKIEK-HASAPTSVCSSPRSSFEEKDFNH 437
R+R + RFRKLDSP+DSGIESGTEK++K +SAPTSVCSSPRSS E+K+ +H
Sbjct: 421 RHRED----MKAPHRFRKLDSPSDSGIESGTEKVDKLTSSAPTSVCSSPRSSVEDKEDHH 476
Query: 438 VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAE-PLHPSLASSHSMLA 495
+EDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRAL +K+ +EAE SL+S+HS LA
Sbjct: 477 IEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALIRKEESEAENTSTSSLSSTHSTLA 536
Query: 496 KSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI-------------KP 542
+SLMEGPRMTP+Q+KRT+I+H+YIMR W SVI P
Sbjct: 537 RSLMEGPRMTPEQMKRTDIIHSYIMRGGE-------SCWGQQSVITSTASRGSYVIVNAP 589
Query: 543 APPATV------TSNALLELQVAATSQPLNLSKKTPPPSPRLSVVSLEA 585
PP + ++++L+ELQV +QP NLSKK+PPPSPR V+SLEA
Sbjct: 590 TPPLYIPSVSPSSTSSLVELQVG--TQPXNLSKKSPPPSPRPKVLSLEA 636
>gi|187468482|emb|CAM97373.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 985
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/612 (63%), Positives = 436/612 (71%), Gaps = 110/612 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DEQR+LSTVVRAHLDTC FT +K+
Sbjct: 154 VRFGRVPKREKARILAAMQQSSNSRSQEKAVAAELEDEQRLLSTVVRAHLDTCDFTREKV 213
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
EPML RAR+ P+YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 214 EPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 273
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R++IH SSNARFLM
Sbjct: 274 GFALLPQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLM 333
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L LSD E+GLF S+VVI+P R GLRN EL+ERM+GKL+ L V++QN
Sbjct: 334 DSMFDFAERLNSLRLSDAEVGLFCSVVVIAPDRPGLRNTELIERMQGKLKAALQMVVSQN 393
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQ--W----HGEDNS 316
HP N+C EL+ +PDLRTLN LHSEKL+AF+MTEQQQ QQQQ W E NS
Sbjct: 394 HPGHANICHELMKKIPDLRTLNTLHSEKLLAFKMTEQQQLQQQQQQQHLWGTSPEEESNS 453
Query: 317 KSPTG----SSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTH------AQNAP 365
KSP G SS SDVTM+E VKSPLGSVSSTESVCS EVA+L EY H A +AP
Sbjct: 454 KSPAGSSSWSSSSDVTMDEAVKSPLGSVSSTESVCSGEVASLTEYQPNHHPVSHQASSAP 513
Query: 366 LLAATLAGAQCPHRNRANSGSTTDGD--------------------------------RR 393
LLAATLAG CPHR+RANSGST+ D R
Sbjct: 514 LLAATLAGGICPHRHRANSGSTSGDDDMSGLPHHSHHGLTITAVNPPSRQQPLMPQHHHR 573
Query: 394 F-RKLDSPTDSGIESGTEKIEK-------HASAPTSVCSSPRSSFEEKD----------F 435
F RKLDSP+DSGIESGTEK++K SAPTSVCSSPRSS E+KD
Sbjct: 574 FQRKLDSPSDSGIESGTEKLDKLTSGGGSTGSAPTSVCSSPRSSLEDKDEEKHHNGSSGS 633
Query: 436 NHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP------------ 482
+H++DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRA R KDSAEAEP
Sbjct: 634 SHIDDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRACRNKDSAEAEPMIVHVSPPPPSH 693
Query: 483 -----------LHPSLASSH------------------SMLAKSLMEGPRMTPDQLKRTE 513
LH L S++ S LAKSLME PRMT +QLKRT+
Sbjct: 694 PVPPQHHSSPQLHLHLTSNNHQSQSSTSSTSSSLSSTHSTLAKSLMESPRMTAEQLKRTD 753
Query: 514 IVHNYIMRTDSP 525
I+HNYIMR DSP
Sbjct: 754 IIHNYIMRADSP 765
>gi|242010552|ref|XP_002426029.1| ecdysone-induced protein 75B, putative [Pediculus humanus corporis]
gi|212510039|gb|EEB13291.1| ecdysone-induced protein 75B, putative [Pediculus humanus corporis]
Length = 848
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/585 (65%), Positives = 428/585 (73%), Gaps = 83/585 (14%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQSTN++ EKA+AAEL+DEQR+L TV+RAHLDTC FT DKI
Sbjct: 80 VRFGRVPKREKARILAAMQQSTNSRSQEKAVAAELEDEQRLLGTVIRAHLDTCDFTKDKI 139
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
EPM+ RARE P+YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 140 EPMIARAREQPSYTACPPTLACPLNPNPQPLSGQQELLQDFSKRFSPAIRGVVEFAKRIP 199
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFDSQ+NSMICLNG+VL ++SIH +SNARFLM
Sbjct: 200 GFSLLPQDDQVTLLKAGVFEVLLVRLACMFDSQSNSMICLNGQVLKKESIHNTSNARFLM 259
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD EIGLF S+VVI+ R GLRN +L+ERM KL N L V+ QN
Sbjct: 260 DSMFDFAERINSLGLSDAEIGLFCSVVVIAADRPGLRNTDLIERMHNKLRNSLQAVVTQN 319
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE----QQQQLAAQQQQWHGED-NSK 317
HP ++C EL+ +PDLRTLN LHSEKL+AF+MTE QQQQ QQ+ W E+ +SK
Sbjct: 320 HPGHTDICNELMKKIPDLRTLNTLHSEKLLAFKMTEQQQLQQQQQLQQQEMWTEEEVHSK 379
Query: 318 SPTG---SSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAG 373
SP G SS SDVTM+E VKSPLGSVSSTESVCS EVA + ++ A APLLAATLAG
Sbjct: 380 SPAGSSWSSSSDVTMDEAVKSPLGSVSSTESVCSGEVAAITDHQGGPASTAPLLAATLAG 439
Query: 374 AQCPHRNRANSGSTTDGD----------------------------RRFRKLDSPTDSGI 405
CPHR+RANSGST+ D R RKLDSP+DSGI
Sbjct: 440 GICPHRHRANSGSTSGDDDIMGSHLLQNGLTITAVNNPSKSYNQSHRFHRKLDSPSDSGI 499
Query: 406 ESGTEKIEKHA----SAPTSVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL-DT 455
ESGTEKI+K SAPTS+CSSPRSS E+KD + VEDMPVLKR+LQAPPL DT
Sbjct: 500 ESGTEKIDKVTNSVNSAPTSLCSSPRSSLEDKDEDKQHTHIVEDMPVLKRVLQAPPLYDT 559
Query: 456 SSLMDEAYKPHKKFRALRQKDSAEAEPL-----HPSLASS--HS---------------- 492
+SLMDEAYKPHKKFRALR KDSAEAEP+ PS+ SS HS
Sbjct: 560 NSLMDEAYKPHKKFRALRNKDSAEAEPMIVVSPVPSVNSSEHHSSTQLHRHLTATTSAPP 619
Query: 493 ------------MLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSP 525
LAKSLMEGPRMT +Q+KR EI+HNYIMR D P
Sbjct: 620 SLTGSSLSSTHSTLAKSLMEGPRMTAEQVKRQEIIHNYIMRGDPP 664
>gi|91680598|emb|CAJ87514.1| ecdysone inducible protein 75 isoform B [Blattella germanica]
Length = 907
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/612 (63%), Positives = 436/612 (71%), Gaps = 110/612 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DEQR+LSTVVRAHLDTC FT +K+
Sbjct: 76 VRFGRVPKREKARILAAMQQSSNSRSQEKAVAAELEDEQRLLSTVVRAHLDTCDFTREKV 135
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
EPML RAR+ P+YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 136 EPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 195
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R++IH SSNARFLM
Sbjct: 196 GFALLPQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLM 255
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L LSD E+GLF S+VVI+P R GLRN EL+ERM+GKL+ L V++QN
Sbjct: 256 DSMFDFAERLNSLRLSDAEVGLFCSVVVIAPDRPGLRNTELIERMQGKLKAALQMVVSQN 315
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQ--W----HGEDNS 316
HP N+C EL+ +PDLRTLN LHSEKL+AF+MTEQQQ QQQQ W E NS
Sbjct: 316 HPGHANICHELMKKIPDLRTLNTLHSEKLLAFKMTEQQQLQQQQQQQHLWGTSPEEESNS 375
Query: 317 KSPTG----SSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTH------AQNAP 365
KSP G SS SDVTM+E VKSPLGSVSSTESVCS EVA+L EY H A +AP
Sbjct: 376 KSPAGSSSWSSSSDVTMDEAVKSPLGSVSSTESVCSGEVASLTEYQPNHHPVSHQASSAP 435
Query: 366 LLAATLAGAQCPHRNRANSGSTTDGD--------------------------------RR 393
LLAATLAG CPHR+RANSGST+ D R
Sbjct: 436 LLAATLAGGICPHRHRANSGSTSGDDDMSGLPHHSHHGLTITAVNPPSRQQPLMPQHHHR 495
Query: 394 F-RKLDSPTDSGIESGTEKIEK-------HASAPTSVCSSPRSSFEEKD----------F 435
F RKLDSP+DSGIESGTEK++K SAPTSVCSSPRSS E+KD
Sbjct: 496 FQRKLDSPSDSGIESGTEKLDKLTSGGGSTGSAPTSVCSSPRSSLEDKDEEKHHNGSSGS 555
Query: 436 NHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP------------ 482
+H++DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRA R KDSAEAEP
Sbjct: 556 SHIDDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRACRNKDSAEAEPMIVHVSPPPPSH 615
Query: 483 -----------LHPSLASSH------------------SMLAKSLMEGPRMTPDQLKRTE 513
LH L S++ S LAKSLME PRMT +QLKRT+
Sbjct: 616 PVPPQHHSSPQLHLHLTSNNHQSQSSTSSTSSSLSSTHSTLAKSLMESPRMTAEQLKRTD 675
Query: 514 IVHNYIMRTDSP 525
I+HNYIMR DSP
Sbjct: 676 IIHNYIMRADSP 687
>gi|91680596|emb|CAJ87513.1| ecdysone inducible protein 75 isoform A [Blattella germanica]
Length = 954
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/612 (63%), Positives = 436/612 (71%), Gaps = 110/612 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DEQR+LSTVVRAHLDTC FT +K+
Sbjct: 123 VRFGRVPKREKARILAAMQQSSNSRSQEKAVAAELEDEQRLLSTVVRAHLDTCDFTREKV 182
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
EPML RAR+ P+YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 183 EPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 242
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R++IH SSNARFLM
Sbjct: 243 GFALLPQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLM 302
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L LSD E+GLF S+VVI+P R GLRN EL+ERM+GKL+ L V++QN
Sbjct: 303 DSMFDFAERLNSLRLSDAEVGLFCSVVVIAPDRPGLRNTELIERMQGKLKAALQMVVSQN 362
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQ--W----HGEDNS 316
HP N+C EL+ +PDLRTLN LHSEKL+AF+MTEQQQ QQQQ W E NS
Sbjct: 363 HPGHANICHELMKKIPDLRTLNTLHSEKLLAFKMTEQQQLQQQQQQQHLWGTSPEEESNS 422
Query: 317 KSPTG----SSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTH------AQNAP 365
KSP G SS SDVTM+E VKSPLGSVSSTESVCS EVA+L EY H A +AP
Sbjct: 423 KSPAGSSSWSSSSDVTMDEAVKSPLGSVSSTESVCSGEVASLTEYQPNHHPVSHQASSAP 482
Query: 366 LLAATLAGAQCPHRNRANSGSTTDGD--------------------------------RR 393
LLAATLAG CPHR+RANSGST+ D R
Sbjct: 483 LLAATLAGGICPHRHRANSGSTSGDDDMSGLPHHSHHGLTITAVNPPSRQQPLMPQHHHR 542
Query: 394 F-RKLDSPTDSGIESGTEKIEK-------HASAPTSVCSSPRSSFEEKD----------F 435
F RKLDSP+DSGIESGTEK++K SAPTSVCSSPRSS E+KD
Sbjct: 543 FQRKLDSPSDSGIESGTEKLDKLTSGGGSTGSAPTSVCSSPRSSLEDKDEEKHHNGSSGS 602
Query: 436 NHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP------------ 482
+H++DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRA R KDSAEAEP
Sbjct: 603 SHIDDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRACRNKDSAEAEPMIVHVSPPPPSH 662
Query: 483 -----------LHPSLASSH------------------SMLAKSLMEGPRMTPDQLKRTE 513
LH L S++ S LAKSLME PRMT +QLKRT+
Sbjct: 663 PVPPQHHSSPQLHLHLTSNNHQSQSSTSSTSSSLSSTHSTLAKSLMESPRMTAEQLKRTD 722
Query: 514 IVHNYIMRTDSP 525
I+HNYIMR DSP
Sbjct: 723 IIHNYIMRADSP 734
>gi|187468486|emb|CAM97375.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 945
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/612 (63%), Positives = 436/612 (71%), Gaps = 110/612 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+N++ EKA+AAEL+DEQR+LSTVVRAHLDTC FT +K+
Sbjct: 114 VRFGRVPKREKARILAAMQQSSNSRSQEKAVAAELEDEQRLLSTVVRAHLDTCDFTREKV 173
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
EPML RAR+ P+YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 174 EPMLARARDQPSYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 233
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R++IH SSNARFLM
Sbjct: 234 GFALLPQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLM 293
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L LSD E+GLF S+VVI+P R GLRN EL+ERM+GKL+ L V++QN
Sbjct: 294 DSMFDFAERLNSLRLSDAEVGLFCSVVVIAPDRPGLRNTELIERMQGKLKAALQMVVSQN 353
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQ--W----HGEDNS 316
HP N+C EL+ +PDLRTLN LHSEKL+AF+MTEQQQ QQQQ W E NS
Sbjct: 354 HPGHANICHELMKKIPDLRTLNTLHSEKLLAFKMTEQQQLQQQQQQQHLWGTSPEEESNS 413
Query: 317 KSPTG----SSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTH------AQNAP 365
KSP G SS SDVTM+E VKSPLGSVSSTESVCS EVA+L EY H A +AP
Sbjct: 414 KSPAGSSSWSSSSDVTMDEAVKSPLGSVSSTESVCSGEVASLTEYQPNHHPVSHQASSAP 473
Query: 366 LLAATLAGAQCPHRNRANSGSTTDGD--------------------------------RR 393
LLAATLAG CPHR+RANSGST+ D R
Sbjct: 474 LLAATLAGGICPHRHRANSGSTSGDDDMSGLPHHSHHGLTITAVNPPSRQQPLMPQHHHR 533
Query: 394 F-RKLDSPTDSGIESGTEKIEK-------HASAPTSVCSSPRSSFEEKD----------F 435
F RKLDSP+DSGIESGTEK++K SAPTSVCSSPRSS E+KD
Sbjct: 534 FQRKLDSPSDSGIESGTEKLDKLTSGGGSTGSAPTSVCSSPRSSLEDKDEEKHHNGSSGS 593
Query: 436 NHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP------------ 482
+H++DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRA R KDSAEAEP
Sbjct: 594 SHIDDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRACRNKDSAEAEPMIVHVSPPPPSH 653
Query: 483 -----------LHPSLASSH------------------SMLAKSLMEGPRMTPDQLKRTE 513
LH L S++ S LAKSLME PRMT +QLKRT+
Sbjct: 654 PVPPQHHSSPQLHLHLTSNNHQSQSSTSSTSSSLSSTHSTLAKSLMESPRMTAEQLKRTD 713
Query: 514 IVHNYIMRTDSP 525
I+HNYIMR DSP
Sbjct: 714 IIHNYIMRADSP 725
>gi|332025807|gb|EGI65964.1| Ecdysone-inducible protein E75 [Acromyrmex echinatior]
Length = 891
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/585 (64%), Positives = 429/585 (73%), Gaps = 88/585 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DEQR+L+TVVRAH+DTC FT DK+
Sbjct: 160 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLTTVVRAHIDTCDFTRDKV 219
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P+L RARE P YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 220 TPILARARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 279
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DDQVTLLKAGVFEVLLVRLACMFD QTNSMICLNG+VL R+SIH SSNARFLM
Sbjct: 280 GFNLLAQDDQVTLLKAGVFEVLLVRLACMFDGQTNSMICLNGQVLKRESIHNSSNARFLM 339
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN ELVERM KL N L VL QN
Sbjct: 340 DSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQN 399
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA----------------- 305
HP+ ++ EL+ +PDL+TLN LHSEKL+AF+MTEQQQQL A
Sbjct: 400 HPQHPDILRELLKKIPDLKTLNTLHSEKLLAFKMTEQQQQLQAQQQHQQQQQTQHVITPQ 459
Query: 306 QQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY------TS 358
QQ W E+ + GS+ SDVT++E VKSPLGSVSSTES CS EVA+L EY +
Sbjct: 460 QQPHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHPVPPPSG 518
Query: 359 THAQNAPLLAATLAGAQCPHRNRANSGSTTDGD-----------------RRFRKLDSPT 401
HA +APLLAATLAG CPHR RANSGST+ GD R FRKLDSP+
Sbjct: 519 HHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRSTISKTPQPPQCRSFRKLDSPS 578
Query: 402 DSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL-DT 455
DSGIESGTEK +K +SAPTSVCSSPRS E+K+ VEDMPVLKR+LQAPPL DT
Sbjct: 579 DSGIESGTEKPDKPASSSASSAPTSVCSSPRS--EDKE---VEDMPVLKRVLQAPPLYDT 633
Query: 456 SSLMDEAYKPHKKFRALRQKDSAEAEP------------LHPS----------------- 486
+SLMDEAYKPHKKFRALRQKDSAEAEP LH +
Sbjct: 634 NSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPPTQTTQSQCP 693
Query: 487 -----LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPP 526
L+S+HS LA+SLMEGPRMT +QLKRT+I+HNYIMR ++ P
Sbjct: 694 QTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASP 738
>gi|340721154|ref|XP_003398990.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
1 [Bombus terrestris]
Length = 895
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/587 (64%), Positives = 430/587 (73%), Gaps = 93/587 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DEQR+L+TVV+AHLDTC FT DK+
Sbjct: 161 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKV 220
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P+L RARE P YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 221 APILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 280
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R+SIH SSNARFLM
Sbjct: 281 GFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLM 340
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN ELVERM KL N L VL QN
Sbjct: 341 DSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQN 400
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA----------------- 305
HP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQQQ+ A
Sbjct: 401 HPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINA 460
Query: 306 ---QQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY----- 356
QQQ W E+ + GS+ SDVT++E VKSPLGSVSSTES EVA+L EY
Sbjct: 461 QQPQQQHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSVSSTESA---EVASLTEYHHVAP 516
Query: 357 -TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR-----------------RFRKLD 398
+ HA +APLLAATLAG CPHR RANSGST+ GD RFRKLD
Sbjct: 517 PSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLD 576
Query: 399 SPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL 453
SP+DSGIESGTEK +K +SAPTSVCSSPRS E+K+ VEDMPVLKR+LQAPPL
Sbjct: 577 SPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRS--EDKE---VEDMPVLKRVLQAPPL 631
Query: 454 -DTSSLMDEAYKPHKKFRALRQKDSAEAEP----------LH----------PS------ 486
DT+SLMDEAYKPHKKFRALRQKDSAEAEP LH PS
Sbjct: 632 YDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSNQVQAQ 691
Query: 487 -------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPP 526
L+S+HS LA+SLMEGPRMT +QLKRT+I+HNYIMR ++ P
Sbjct: 692 CPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASP 738
>gi|340721156|ref|XP_003398991.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
2 [Bombus terrestris]
gi|350399401|ref|XP_003485512.1| PREDICTED: ecdysone-induced protein 75B, isoform B-like [Bombus
impatiens]
Length = 872
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/587 (64%), Positives = 428/587 (72%), Gaps = 93/587 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DEQR+L+TVV+AHLDTC FT DK+
Sbjct: 138 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKV 197
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P+L RARE P YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 198 APILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 257
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R+SIH SSNARFLM
Sbjct: 258 GFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLM 317
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN ELVERM KL N L VL QN
Sbjct: 318 DSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQN 377
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA----------------- 305
HP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQQQ+ A
Sbjct: 378 HPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINA 437
Query: 306 ---QQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY----- 356
QQQ W E+ + GS+ SDVT++E VKSPLGSVSSTES EVA+L EY
Sbjct: 438 QQPQQQHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSVSSTESA---EVASLTEYHHVAP 493
Query: 357 -TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR-----------------RFRKLD 398
+ HA +APLLAATLAG CPHR RANSGST+ GD RFRKLD
Sbjct: 494 PSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLD 553
Query: 399 SPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL 453
SP+DSGIESGTEK +K +SAPTSVCSSPRS +E VEDMPVLKR+LQAPPL
Sbjct: 554 SPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKE-----VEDMPVLKRVLQAPPL 608
Query: 454 -DTSSLMDEAYKPHKKFRALRQKDSAEAEP----------LH----------PS------ 486
DT+SLMDEAYKPHKKFRALRQKDSAEAEP LH PS
Sbjct: 609 YDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSNQVQAQ 668
Query: 487 -------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPP 526
L+S+HS LA+SLMEGPRMT +QLKRT+I+HNYIMR ++ P
Sbjct: 669 CPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASP 715
>gi|121582432|ref|NP_001073579.1| ecdysone-induced protein 75 [Apis mellifera]
gi|121308432|dbj|BAF43600.1| ecdysone-induced protein 75 [Apis mellifera]
Length = 900
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/607 (62%), Positives = 430/607 (70%), Gaps = 110/607 (18%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DEQR+L+TVV+AHLDTC FT DK+
Sbjct: 138 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKV 197
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P+L RARE P YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 198 APILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 257
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R+SIH SSNARFLM
Sbjct: 258 GFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLM 317
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN ELVERM KL N L VL QN
Sbjct: 318 DSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQN 377
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE------------------------ 298
HP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTE
Sbjct: 378 HPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINA 437
Query: 299 ---------------QQQQLAAQQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSST 342
QQQQ QQQ W E+ + GS+ SDVT++E VKSPLGSVSST
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSA-SDVTLDEAVKSPLGSVSST 496
Query: 343 ESVCSNEVATLNEY------TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR---- 392
ES CS EVA+L EY + HA +APLLAATLAG CPHR RANSGST+ GD
Sbjct: 497 ESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHR 556
Query: 393 -------------RFRKLDSPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEKD 434
RFRKLDSP+DSGIESGTEK +K +SAPTSVCSSPRS E+K+
Sbjct: 557 ASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRS--EDKE 614
Query: 435 FNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEP----------L 483
VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALRQKDSAEAEP L
Sbjct: 615 ---VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQL 671
Query: 484 H----------PS--------------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYI 519
H PS L+S+HS LA+SLMEGPRMT +QLKRT+I+HNYI
Sbjct: 672 HLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYI 731
Query: 520 MRTDSPP 526
MR ++ P
Sbjct: 732 MRGEASP 738
>gi|383847771|ref|XP_003699526.1| PREDICTED: ecdysone-inducible protein E75-like [Megachile
rotundata]
Length = 782
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/671 (57%), Positives = 448/671 (66%), Gaps = 134/671 (19%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ EKA+AAEL+DEQR+L+TVV+AHLDTC FT DK+
Sbjct: 137 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKV 196
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P+L RARE P YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 197 APILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 256
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R+SIH SSNARFLM
Sbjct: 257 GFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLM 316
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+GLF SIVVI+ R GLRN ELVERM KL N L VL QN
Sbjct: 317 DSMFDFAERVNSLRLSDAELGLFCSIVVIAADRPGLRNTELVERMHNKLRNALQTVLAQN 376
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ------------------LA 304
HP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTEQQQQ ++
Sbjct: 377 HPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQQQQQQQQQTQHVIS 436
Query: 305 AQ--QQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY----- 356
AQ QQ W E+ + GS+ SDVT++E VKSPLGSVSSTES CS EVA+L EY
Sbjct: 437 AQQPQQHWPMEEEPPASWGSA-SDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVPP 495
Query: 357 -TSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR-----------------RFRKLD 398
T HA +APLLAATLAG CPHR RANSGST+ GD RFRKLD
Sbjct: 496 PTGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLD 555
Query: 399 SPTDSGIESGTEKIEK-----HASAPTSVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL 453
SP+DSGIESGTEK +K +SAPTSVCSSPRS +E VEDMPVLKR+LQAPPL
Sbjct: 556 SPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKE-----VEDMPVLKRVLQAPPL 610
Query: 454 -DTSSLMDEAYKPHKKFRALRQKDSAEAEPLHPS-------------------------- 486
DT+SLMDEAYKPHKKFRALRQKDSAE P+
Sbjct: 611 YDTNSLMDEAYKPHKKFRALRQKDSAEXAEAEPAVIVQHTQSQLHLHLTSPPARSPSNQV 670
Query: 487 ----------LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPR---- 532
L+S+HS LA+SLME +Y+M +SP S+ PR
Sbjct: 671 QPQCPQTASLLSSTHSTLARSLMEA--------------SDYLMVGNSPASS--PRYLSA 714
Query: 533 -------------SWHSSSVIKPAPPATVTSNALLELQVAATSQPLNLSKKTPPPSPR-- 577
S +++++ P+ + L++ +A + QPLNLSKK+P PSPR
Sbjct: 715 AATSSTSTSPRPTSSTAATLVLSGCPSNMME---LQVDIADSQQPLNLSKKSPSPSPRPL 771
Query: 578 ---LSVVSLEA 585
+SLEA
Sbjct: 772 VGPCKALSLEA 782
>gi|328704916|ref|XP_001946085.2| PREDICTED: ecdysone-induced protein 75B, isoforms C/D
[Acyrthosiphon pisum]
Length = 1026
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 345/609 (56%), Positives = 412/609 (67%), Gaps = 106/609 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARI+AAMQ S+N+K EKA AEL+D+QR++++VVRAHL+TC FT+DK+
Sbjct: 267 VRFGRVPKREKARIMAAMQHSSNSKSQEKAAVAELEDDQRLVASVVRAHLETCDFTSDKV 326
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P L RARE P YT C TLACPLNP+ P+ GQQELL DFS+RFSP IR VVEFAKRIP
Sbjct: 327 APTLARAREQPNYTLCHPTLACPLNPSPRPVTGQQELLNDFSKRFSPAIRGVVEFAKRIP 386
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DDQVTLLKAGVFEVLLVRLACMFDS+ NSM+ LNG+VL R+S+ + SNARFL
Sbjct: 387 GFGLLAQDDQVTLLKAGVFEVLLVRLACMFDSECNSMVTLNGQVLRRESVCAYSNARFLT 446
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMF+FAERLN + L+D+EIGLF++++VI+ R GLRN E +ERM +L+ L VL QN
Sbjct: 447 DSMFEFAERLNAMRLNDSEIGLFNAVIVIAADRPGLRNVEFIERMHKQLKCALQSVLMQN 506
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL------------------- 303
HP++ +LC EL+ +PDLRTLN LHSEKL+AF+MTEQQ QL
Sbjct: 507 HPDRPSLCQELLKKIPDLRTLNTLHSEKLLAFKMTEQQNQLDQQQQHQQQQHQDTTTTTS 566
Query: 304 ----AAQQQQ-----W----HGED--NSKSP---TGSSWSDVT-----------MEEVKS 334
A Q Q W +G D N KSP SSWSD T ++EVKS
Sbjct: 567 IASAAVQHHQNIGGMWSLMMNGTDDFNRKSPEEAGSSSWSDETTSVEDMKSLAMLDEVKS 626
Query: 335 PLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTT------ 388
PLGSVSSTESVCS+E + S HA +APLLAA+LAGA CP R A + S
Sbjct: 627 PLGSVSSTESVCSDE---YHHGPSKHAASAPLLAASLAGAVCPIRRHAAAPSDELHHQVI 683
Query: 389 ---DGDRRF-RKLDSPTDSGIESGTEKIEKHA--SAPTSVCSSPRSSFEEK----DFNH- 437
RR+ RK DSPTDSGIESGTEK+++ SAPTSVCSSPRS+ E+ D +H
Sbjct: 684 VRPMSCRRYQRKQDSPTDSGIESGTEKLDRPMPHSAPTSVCSSPRSTVEDAVMSADSHHP 743
Query: 438 -VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQ-KDSAEAEPLHPSLAS----- 489
+EDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALR KDSAEAE + PS+A+
Sbjct: 744 AIEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRSAKDSAEAEAVRPSVATTVHNN 803
Query: 490 ---------SH--------------------SMLAKSLMEGPRMTPDQLKRTEIVHNYIM 520
SH S LAKSL E P+MT +Q+KRTE +HN+IM
Sbjct: 804 STLLNHLQQSHHHNSPQLHHHLTSSSLSSTHSTLAKSLRETPKMTAEQIKRTEDIHNFIM 863
Query: 521 RTDSPPSAY 529
R D+ S Y
Sbjct: 864 REDTACSGY 872
>gi|380016505|ref|XP_003692223.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like [Apis
florea]
Length = 892
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 320/523 (61%), Positives = 359/523 (68%), Gaps = 106/523 (20%)
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
ACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIPGFSLL DDQVTLLKAGVFE
Sbjct: 222 ACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFE 281
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEI 222
VLLVRLACMFD+QTNSMICLNG+VL R+SIH SSNARFLMDSMFDFAER+N L LSD E+
Sbjct: 282 VLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAEL 341
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GLF S+VVI+ R GLRN ELVERM KL N L VL QNHP+ ++ EL+ +PDLRT
Sbjct: 342 GLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRT 401
Query: 283 LNQLHSEKLVAFQMTE----------------------------------QQQQLAAQQQ 308
LN LHSEKL+AF+MTE QQQQ QQQ
Sbjct: 402 LNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQ 461
Query: 309 QWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY------TSTHA 361
W E+ + GS+ SDVT++E VKSPLGSVSSTES CS EVA+L EY + HA
Sbjct: 462 HWPMEEEPAASWGSA-SDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPPSGHHA 520
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTDGDR-----------------RFRKLDSPTDSG 404
+APLLAATLAG CPHR RANSGST+ GD RFRKLDSP+DSG
Sbjct: 521 SSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSG 580
Query: 405 IESGTEKIEK-----HASAPTSVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL-DTSSL 458
IESGTEK +K +SAPTSVCSSPRS E+K+ VEDMPVLKR+LQAPPL DT+SL
Sbjct: 581 IESGTEKADKPASSSASSAPTSVCSSPRS--EDKE---VEDMPVLKRVLQAPPLYDTNSL 635
Query: 459 MDEAYKPHKKFRALRQKDSAEAEP----------LH----------PS------------ 486
MDEAYKPHKKFRALRQKDSAEAEP LH PS
Sbjct: 636 MDEAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQQASQCPQT 695
Query: 487 ---LASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPP 526
L+S+HS LA+SLMEGPRMT +QLKRT+I+HNYIMR ++ P
Sbjct: 696 ASLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASP 738
>gi|357603660|gb|EHJ63872.1| nuclear hormone receptor E75 isoform B [Danaus plexippus]
Length = 612
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 320/642 (49%), Positives = 400/642 (62%), Gaps = 110/642 (17%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M ++LPILK IL G +YHNAPVRFGRVPKREKARILAAMQQS++++ E+A AAELDD
Sbjct: 1 MGEDLPILKGILNGVVKYHNAPVRFGRVPKREKARILAAMQQSSSSRAQEQAAAAELDDA 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ VVRAHLDTC FT D++ M RAR+ PTY+ TLACPLNP LQ ++E
Sbjct: 61 PRLLARVVRAHLDTCEFTRDRVASMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE-- 115
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
FS+RF+ IR V++FA IPGF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+I
Sbjct: 116 --FSQRFAHVIRGVIDFAGLIPGFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSII 173
Query: 182 CLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+++ RDSI S +NARFL+DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN
Sbjct: 174 CLNGQLMKRDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRN 233
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
ELVERM +L+ L V+ QN P++ EL+ LPDLRTL+ LH+EKLV F+ TE +
Sbjct: 234 IELVERMHARLKACLQTVVTQNRPDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHK 292
Query: 301 QQLAAQQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTST 359
+ L +QQ W E+ G SW+D +E +SP+GSVSS+ES +
Sbjct: 293 ELL--RQQMWGDEE------GCSWADSGADESARSPIGSVSSSESG-----------EAM 333
Query: 360 HAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR--------------------RFRKLDS 399
PLLAATLAG R R +S + D + R+RKLDS
Sbjct: 334 GDCGTPLLAATLAG-----RRRLDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDS 388
Query: 400 PTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH----VEDMPVLKRILQAPPL-D 454
PTDSGIESG EK E+ P S CSSPRSS EE +DMPVLKR+L+APPL D
Sbjct: 389 PTDSGIESGNEKHER-IVGPGSGCSSPRSSLEEHTEERRPVPADDMPVLKRVLEAPPLYD 447
Query: 455 TSSLMDEAYKPHKKFRALRQKDSAEAE-----------------------------PLHP 485
T SLMDEAYKPHKKFRA+R +D+ EAE PL
Sbjct: 448 TPSLMDEAYKPHKKFRAMR-RDTGEAEARPMLLTPSPQPPQHPHPASPAHPAHSPRPLRA 506
Query: 486 SLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTD-------------SPPSAYFPR 532
SL+S+HS+LAKSLMEGPRMTP+QLKRT+I+ Y+ R D P +
Sbjct: 507 SLSSTHSVLAKSLMEGPRMTPEQLKRTDIIQQYMRRGDVTASSSSTSSAGECPLRSGLLA 566
Query: 533 SWHSSSVIKPAPPATVTSNALLELQVAATSQPLNLSKKTPPP 574
+ +S PAP +LELQV PLNLSKK+P P
Sbjct: 567 CYRGASP-SPAP------EPVLELQVEVADAPLNLSKKSPSP 601
>gi|321479389|gb|EFX90345.1| hypothetical protein DAPPUDRAFT_205205 [Daphnia pulex]
Length = 712
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/551 (54%), Positives = 378/551 (68%), Gaps = 63/551 (11%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N + E++L AE DE +++ +VVRAH++TC FT +K+
Sbjct: 171 VRFGRVPKREKAKILAAMQ-SVNARLAERSLPAEFADEVQLMQSVVRAHMETCDFTREKV 229
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
+ ++ A P YTACP TLACPLNP P GQQ+LLQDFSERF P IRDVVEFAKR+P
Sbjct: 230 QILMADAHRQPNYTACPPTLACPLNPTPAPSNGQQQLLQDFSERFLPAIRDVVEFAKRLP 289
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DD+VTLLK GVFEVLLVRLA MFDSQ+N+M+CLNG++L RD++H SSNARFLM
Sbjct: 290 GFTLLAEDDKVTLLKPGVFEVLLVRLAAMFDSQSNTMLCLNGQLLRRDALHNSSNARFLM 349
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMF+FAERLN L L+D+E+GLF ++VVI+ R GLRN ELVERM+ KL ++L +VLNQ
Sbjct: 350 DSMFEFAERLNSLALNDSELGLFCAVVVIAADRPGLRNVELVERMQSKLRSVLENVLNQA 409
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HP++ L EL+ +PDLRTLN LHSEKL+AF+MTEQQQQ + + PT S
Sbjct: 410 HPDKAGLFLELLRKIPDLRTLNTLHSEKLLAFKMTEQQQQQQQHYNHHA-QQQTPPPTAS 468
Query: 323 SW---SDVTMEE--VKSPLGSVSST--ESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQ 375
W D EE KSP+GSVSS+ ES+CS T + + PLLAA +AG+
Sbjct: 469 PWHNDRDSYDEEGGAKSPMGSVSSSGAESICSGVEGT------SSMSDLPLLAA-VAGSA 521
Query: 376 CP------HRNR-----------ANSGSTTDGDRRFRKLDSPTDSGIESGTEKIEKHASA 418
P HR R N+GS+ + RKLDSP DSGIESG ++ EK ++A
Sbjct: 522 VPLMSGGSHRRRLRGPSENGSSSINAGSSCPYS-KMRKLDSPDDSGIESGVDRYEKMSTA 580
Query: 419 P----TSVCSSPRSSFEEK-DFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRAL 472
TS+CSSPRSS E+K + V+DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRAL
Sbjct: 581 SRSTNTSLCSSPRSSLEDKVKESSVDDMPVLKRVLQAPPLFDTNSLMDEAYKPHKKFRAL 640
Query: 473 RQKDSAEAE--PLH-------------------PSLASSHSMLAKSLMEGPRM-TPDQLK 510
+ ++ E P+ SL S+HS LA+SLMEGP+M + +Q +
Sbjct: 641 TRCAGSKGEESPMRVPAVSSPTSSSSSTSTVSVFSLTSTHSTLARSLMEGPKMVSTEQQR 700
Query: 511 RTEIVHNYIMR 521
R +++ IM+
Sbjct: 701 RADLIVANIMK 711
>gi|112983128|ref|NP_001037042.1| nuclear hormone receptor E75 isoform C [Bombyx mori]
gi|18033301|gb|AAL57048.1|AF332551_1 orphan nuclear receptor E75C [Bombyx mori]
Length = 753
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 308/614 (50%), Positives = 388/614 (63%), Gaps = 104/614 (16%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 170 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 229
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 230 ASMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 282
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 283 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 342
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 343 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHSRLKACLQTVIAQN 402
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
PE+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W+ E+ G
Sbjct: 403 RPERPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWNEEE------GV 453
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW+D +EE +SP+GSVSS+ES PLLAATLAG R R
Sbjct: 454 SWADSVVEESARSPIGSVSSSESG-----------EVPSDCGTPLLAATLAG-----RRR 497
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 498 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IIGPGS 556
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + +DMPVLKR+LQAPPL TS+LMDE YKPHKKFRA+R
Sbjct: 557 GCSSPRSSLEEHTEDRRPTAPADDMPVLKRVLQAPPLYGGTSTLMDETYKPHKKFRAMR- 615
Query: 475 KDSAEAE-----------PLHP-----------------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE PLHP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 616 RDTGEAEARPVQPTPSPQPLHPHPASPAHPAHSPRPPRISLSSTHSVLAKSLMEGPRMTP 675
Query: 507 DQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI------KPAPPATVTSNALLELQVAA 560
+QLKRT+++ Y MR + S+ + + ++ PAPP +L LQV
Sbjct: 676 EQLKRTDMIQQY-MRRNEAGSSVEGCTLRTGGLLTCYRGASPAPP------PVLALQVDV 728
Query: 561 TSQPLNLSKKTPPP 574
T PLNLSKK+P P
Sbjct: 729 TDAPLNLSKKSPSP 742
>gi|18033299|gb|AAL57047.1|AF332550_1 orphan nuclear receptor E75A [Bombyx mori]
Length = 697
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 309/615 (50%), Positives = 391/615 (63%), Gaps = 106/615 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 114 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 173
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 174 ASMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 226
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 227 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 286
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 287 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHSRLKACLQTVIAQN 346
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
PE+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W+ E+ G
Sbjct: 347 RPERPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWNEEE------GV 397
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCS-NEVATLNEYTSTHAQNAPLLAATLAGAQCPHRN 380
SW+D +EE +SP+GSVSS+ES ++ T PLLAATLAG R
Sbjct: 398 SWADSVVEESARSPIGSVSSSESGEVPSDCGT------------PLLAATLAG-----RR 440
Query: 381 RANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPT 420
R +S + D + R+RKLDSPTDSGIESG EK E+ P
Sbjct: 441 RLDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IIGPG 499
Query: 421 SVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALR 473
S CSSPRSS EE + +DMPVLKR+LQAPPL TS+LMDE YKPHKKFRA+R
Sbjct: 500 SGCSSPRSSLEEHTEDRRPTAPADDMPVLKRVLQAPPLYGGTSTLMDETYKPHKKFRAMR 559
Query: 474 QKDSAEAE-----------PLHP-----------------SLASSHSMLAKSLMEGPRMT 505
+D+ EAE PLHP SL+S+HS+LAKSLMEGPRMT
Sbjct: 560 -RDTGEAEARPVQPTPSPQPLHPHPASPAHPAHSPRPPRISLSSTHSVLAKSLMEGPRMT 618
Query: 506 PDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI------KPAPPATVTSNALLELQVA 559
P+QLKRT+++ Y MR + S+ + + ++ PAPP +L LQV
Sbjct: 619 PEQLKRTDMIQQY-MRRNEAGSSVEGCTLRTGGLLTCYRGASPAPP------PVLALQVD 671
Query: 560 ATSQPLNLSKKTPPP 574
T PLNLSKK+P P
Sbjct: 672 VTDAPLNLSKKSPSP 686
>gi|21166368|gb|AAL57049.2|AF332552_1 orphan nuclear receptor E75C splicing variant [Bombyx mori]
Length = 662
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 308/614 (50%), Positives = 388/614 (63%), Gaps = 104/614 (16%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 79 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 138
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 139 ASMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 191
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 192 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 251
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 252 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHSRLKACLQTVIAQN 311
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
PE+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W+ E+ G
Sbjct: 312 RPERPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWNEEE------GV 362
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW+D +EE +SP+GSVSS+ES PLLAATLAG R R
Sbjct: 363 SWADSVVEESARSPIGSVSSSESG-----------EVPSDCGTPLLAATLAG-----RRR 406
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 407 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IIGPGS 465
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + +DMPVLKR+LQAPPL TS+LMDE YKPHKKFRA+R
Sbjct: 466 GCSSPRSSLEEHTEDRRPTAPADDMPVLKRVLQAPPLYGGTSTLMDETYKPHKKFRAMR- 524
Query: 475 KDSAEAE-----------PLHP-----------------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE PLHP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 525 RDTGEAEARPVQPTPSPQPLHPHPASPAHPAHSPRPPRISLSSTHSVLAKSLMEGPRMTP 584
Query: 507 DQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI------KPAPPATVTSNALLELQVAA 560
+QLKRT+++ Y MR + S+ + + ++ PAPP +L LQV
Sbjct: 585 EQLKRTDMIQQY-MRRNEAGSSVEGCTLRTGGLLTCYRGASPAPP------PVLALQVDV 637
Query: 561 TSQPLNLSKKTPPP 574
T PLNLSKK+P P
Sbjct: 638 TDAPLNLSKKSPSP 651
>gi|162951901|ref|NP_001106080.1| nuclear hormone receptor E75 isoform B [Bombyx mori]
gi|6683594|dbj|BAA89263.1| nuclear hormone receptor E75B [Bombyx mori]
Length = 685
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 303/616 (49%), Positives = 382/616 (62%), Gaps = 108/616 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 102 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 162 ASMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 214
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 215 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 274
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 275 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHSRLKACLQAVIAQN 334
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
PE+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W+ E+ G
Sbjct: 335 RPERPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWNEEE------GV 385
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW+D +EE +SP S V++ PLLAATLAG R R
Sbjct: 386 SWADSVVEESARSP-----------SGSVSSSESGEVPSDCGTPLLAATLAG-----RRR 429
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 430 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IIGPGS 488
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + +DMPVLKR+LQAPPL TS+LMDE YKPHKKFRA+R
Sbjct: 489 GCSSPRSSLEEHTEDRRPTAPADDMPVLKRVLQAPPLYGGTSTLMDETYKPHKKFRAMR- 547
Query: 475 KDSAEAE-----------PLHP-----------------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE PLHP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 548 RDTGEAEARPVQPTPSPQPLHPHPASPAHPAHSPRPPRISLSSTHSVLAKSLMEGPRMTP 607
Query: 507 DQLKRTEIVHNYIMRTDSPPS--------AYFPRSWHSSSVIKPAPPATVTSNALLELQV 558
+QLKRT+++ Y+ R ++ S + +S PAPP +L LQV
Sbjct: 608 EQLKRTDMIQQYMRRNEAGSSVEGCPLRTGGLLTCYRGAS---PAPP------PVLALQV 658
Query: 559 AATSQPLNLSKKTPPP 574
T PLNLSKK+P P
Sbjct: 659 DVTDAPLNLSKKSPSP 674
>gi|162951899|ref|NP_001106079.1| nuclear hormone receptor E75 isoform A [Bombyx mori]
gi|6683592|dbj|BAA89262.1| nuclear hormone receptor E75 A [Bombyx mori]
Length = 697
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 303/616 (49%), Positives = 382/616 (62%), Gaps = 108/616 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 114 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 173
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 174 ASMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 226
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 227 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 286
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 287 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHSRLKACLQAVIAQN 346
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
PE+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W+ E+ G
Sbjct: 347 RPERPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWNEEE------GV 397
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW+D +EE +SP S V++ PLLAATLAG R R
Sbjct: 398 SWADSVVEESARSP-----------SGSVSSSESGEVPSDCGTPLLAATLAG-----RRR 441
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 442 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IIGPGS 500
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + +DMPVLKR+LQAPPL TS+LMDE YKPHKKFRA+R
Sbjct: 501 GCSSPRSSLEEHTEDRRPTAPADDMPVLKRVLQAPPLYGGTSTLMDETYKPHKKFRAMR- 559
Query: 475 KDSAEAE-----------PLHP-----------------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE PLHP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 560 RDTGEAEARPVQPTPSPQPLHPHPASPAHPAHSPRPPRISLSSTHSVLAKSLMEGPRMTP 619
Query: 507 DQLKRTEIVHNYIMRTDSPPS--------AYFPRSWHSSSVIKPAPPATVTSNALLELQV 558
+QLKRT+++ Y+ R ++ S + +S PAPP +L LQV
Sbjct: 620 EQLKRTDMIQQYMRRNEAGSSVEGCPLRTGGLLTCYRGAS---PAPP------PVLALQV 670
Query: 559 AATSQPLNLSKKTPPP 574
T PLNLSKK+P P
Sbjct: 671 DVTDAPLNLSKKSPSP 686
>gi|374252460|gb|AEZ00699.1| nuclear receptor E75 [Spodoptera litura]
Length = 611
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 310/630 (49%), Positives = 398/630 (63%), Gaps = 91/630 (14%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M ++LPILK IL G +YHNAPVRFGRVPKREKARILAAMQQS+ ++ E+A AAELDD
Sbjct: 5 MGEDLPILKGILNGVVKYHNAPVRFGRVPKREKARILAAMQQSSTSRANEQAAAAELDDA 64
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ VVRAHLDTC FT +++ M RAR+ P Y+ T+ACPLNP LQ ++E
Sbjct: 65 PRLLARVVRAHLDTCEFTRERVAAMRARARDCPNYSL--PTMACPLNPAPE-LQSEKE-- 119
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
FS+RF+ IR V++FA IPGF LL DD+ TLLK+G+F+ L VRL CMFD+ +S+I
Sbjct: 120 --FSQRFAHVIRGVIDFAGLIPGFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLDSII 177
Query: 182 CLNGEVLVRDSI-HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+V+ RDSI + +NARFL+DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN
Sbjct: 178 CLNGQVMKRDSIQNGANARFLVDSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRN 237
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
ELVERM +L+ L V+ Q+ P++ EL+ LPDLRTL+ LH+EKLV F+ TE +
Sbjct: 238 VELVERMHARLKACLQTVIAQSRPDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHK 296
Query: 301 QQLAAQQQQWHGEDNSKSPTGSSWSD-VTMEEVKSPLGSVSSTESVCSNEVATLNEYTST 359
+ L +QQ E+ SW D V E +SP+GSVSS+ES +
Sbjct: 297 ELL--RQQMLTDEEGVM-----SWGDPVADESARSPIGSVSSSES-----------GEAI 338
Query: 360 HAQNAPLLAATLAGAQCPHRNR-----------------ANSGSTTDGDR---RFRKLDS 399
PLLAATLAG R R A++G T R R+RKLDS
Sbjct: 339 GDCGTPLLAATLAG-----RRRLDPRGSVDEEALGVAHLAHNGLTVTAVRPPPRYRKLDS 393
Query: 400 PTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL- 453
PTDSGIESG EK E+ P S CSSPRSS EE + +DMPVLKR+L+APPL
Sbjct: 394 PTDSGIESGNEKHER-IVGPGSGCSSPRSSLEEHSDDRRPPPSADDMPVLKRVLEAPPLY 452
Query: 454 DTSSLMDEAYKPHKKFRALRQKDSAEAE-----------------------------PLH 484
T+SLMDEAYKPHKKFRA+R +D+ EAE PL
Sbjct: 453 HTTSLMDEAYKPHKKFRAMR-RDTGEAEARVVRPAPSAQPPQHPHPASPAHPAHSPRPLR 511
Query: 485 PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVIKPAP 544
SL+S+HS+LAKSLMEGPRMTP+QLKRT+I+ Y+ R ++ + R+ + + A
Sbjct: 512 ASLSSTHSVLAKSLMEGPRMTPEQLKRTDIIQQYMRRGEAVAESCPMRTGGLLTCYRGAS 571
Query: 545 PATVTSNALLELQVAATSQPLNLSKKTPPP 574
PA + L++ V+ PLNLSKK+P P
Sbjct: 572 PAPQPVMS-LQVDVSDADAPLNLSKKSPSP 600
>gi|309320761|gb|ADO64597.1| E75 [Spodoptera littoralis]
Length = 626
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 307/645 (47%), Positives = 397/645 (61%), Gaps = 106/645 (16%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M ++LPILK IL G +YHNAPVRFGRVPKREKA ILAAMQQS+ ++ E+A AAELDD
Sbjct: 5 MGEDLPILKGILNGVVKYHNAPVRFGRVPKREKASILAAMQQSSTSRANEQAAAAELDDA 64
Query: 62 QRMLSTVVRAHLDTCAFTADKIE--------------PMLR-RAREHPTYTACPSTLACP 106
R+L+ VVRAHLDTC FT +++ P +R RAR+ P Y+ T+ACP
Sbjct: 65 PRLLARVVRAHLDTCEFTRERVAAMRARARDCPNYSLPAMRARARDCPNYSL--PTMACP 122
Query: 107 LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
LNP LQ ++E FS+RF+ IR V++FA IPGF LL DD+ TLLK+G+F+ L
Sbjct: 123 LNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIPGFQLLTQDDKFTLLKSGLFDALF 177
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLMDSMFDFAERLNGLHLSDTEIGLF 225
VRL CMFD+ +S+ICLNG+V+ RDSI + +NARFL+DS F FAER+N ++L+D EIGLF
Sbjct: 178 VRLICMFDAPLDSIICLNGQVMKRDSIQNGANARFLVDSTFKFAERMNSMNLTDAEIGLF 237
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+IV+I+P R GLRN ELVERM +L+ L V+ Q+ P++ EL+ LPDLRTL+
Sbjct: 238 CAIVLITPDRPGLRNVELVERMHARLKACLQTVIAQSRPDRPGFLRELMDTLPDLRTLST 297
Query: 286 LHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGSSWSD-VTMEEVKSPLGSVSSTES 344
LH+EKLV F+ TE ++ L +QQ E+ SW D V E +SP+GSVSS+ES
Sbjct: 298 LHTEKLVVFR-TEHKELL--RQQMLTDEEGVM-----SWGDSVADESARSPIGSVSSSES 349
Query: 345 VCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR------------ 392
+ PLLAATLAG R R +S + D +
Sbjct: 350 G-----------EAXGDCGTPLLAATLAG-----RRRLDSRGSVDEEALGVAHLAHNGLT 393
Query: 393 --------RFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH-----VE 439
R+RKLDSPTDSGIESG EK E+ P S CSSPRSS EE + +
Sbjct: 394 VTAVRPPPRYRKLDSPTDSGIESGNEKHER-IVGPGSGCSSPRSSLEEHSDDRRPPPSAD 452
Query: 440 DMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAE----------------- 481
DMPVLKR+L+APPL T+SLMDEAYKPHKKFRA+R + + EAE
Sbjct: 453 DMPVLKRVLEAPPLYHTTSLMDEAYKPHKKFRAMR-RGTGEAEARVVRPAPSAQPPQHPH 511
Query: 482 ------------PLHPSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAY 529
PL SL+S+HS+LAKSLMEGPRMTP+QLKRT+I+ Y+ R ++ +
Sbjct: 512 PASPAHPAHSPRPLRASLSSTHSVLAKSLMEGPRMTPEQLKRTDIIQQYMRRGEAVAESC 571
Query: 530 FPRSWHSSSVIKPAPPATVTSNALLELQVAATSQPLNLSKKTPPP 574
R+ + + A PA + L++ V+ PLNLSKK+P P
Sbjct: 572 PMRTGGLLTCYRGASPAPQPVMS-LQVDVSDADAPLNLSKKSPSP 615
>gi|220942181|gb|AAY89587.2| E75 nuclear receptor [Gecarcinus lateralis]
Length = 798
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 290/608 (47%), Positives = 382/608 (62%), Gaps = 106/608 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N + E+A+ AEL+D+ R+ + ++RAH+DTC FT DK+
Sbjct: 103 VRFGRVPKREKAKILAAMQ-SVNARSQERAVLAELEDDTRVTAAIIRAHMDTCDFTRDKV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PML++AR HP+YT CP TLACPLNP PL GQQEL+QDFSERFSP IR VVEFAKR+P
Sbjct: 162 APMLQQARAHPSYTQCPPTLACPLNPRPVPLHGQQELVQDFSERFSPAIRGVVEFAKRLP 221
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS-NARFLM 202
GF L +DQVTLLKAGVFEVLLVRLA MFD++TN+M+CLNG++L R+++H+S NARFL+
Sbjct: 222 GFQQLPQEDQVTLLKAGVFEVLLVRLAAMFDARTNTMLCLNGQLLRREALHTSVNARFLV 281
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAERLN L LSD E+ LF ++VV++P R GLRN +LVER++ L N L V++++
Sbjct: 282 DSMFDFAERLNSLCLSDAELALFCAVVVLAPDRPGLRNAQLVERVQRHLVNCLQTVVSKH 341
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HPE +L EL++ +PDLRTLN LHSEKL+ ++MTE AA W D+S+ S
Sbjct: 342 HPENPSLHRELLAKIPDLRTLNTLHSEKLLKYKMTEHT---AATSGPW---DDSR----S 391
Query: 323 SWS-------------DVTMEEVKSPLGSVSSTES------------VCSNEVATLNEYT 357
SWS E ++SP VS +ES +C +EV+ E
Sbjct: 392 SWSMEQESSVGSPSSSCAADEAMRSP---VSCSESMYSGESASSGESICGSEVSGYTELR 448
Query: 358 STHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDRRF----------RKLDSPTDSGIES 407
PL+ R NS + GD RK DSP DSGIES
Sbjct: 449 PPF----PLV----------RRRHDNSEGASSGDEATESPLKCPFSKRKSDSPDDSGIES 494
Query: 408 GTEKIEKHASAPTSVCSSPRSSFEEK-DFNHVEDMPVLKRILQAPP-LDTSSLMDEAYKP 465
GT++ +K +S SVCSSPRSS +EK + + EDM VL+R LQAPP ++T LM+EAYKP
Sbjct: 495 GTDRSDKLSSP--SVCSSPRSSIDEKSEEDREEDMSVLRRALQAPPIINTDLLMEEAYKP 552
Query: 466 HKKFRALRQKD---SAEAEP----------------------------LHPSLASSHSML 494
HKKFRALR+++ S++ P PSLA+SHS L
Sbjct: 553 HKKFRALRREEEPHSSQPTPSLLAQTLAQPPQSSSSLAATHSTLASTLCSPSLAASHSTL 612
Query: 495 AKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVIKPAPPATVTSNALL 554
A++L+EG +++ D ++R +++H+ IMR + S S + PA P V A+
Sbjct: 613 ARTLLEGSKISEDTMRRADLLHSMIMRNE------VRERLPSGSRVSPA-PYYVPQPAMD 665
Query: 555 ELQVAATS 562
LQ+ A+S
Sbjct: 666 RLQLPASS 673
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 26/30 (86%), Gaps = 1/30 (3%)
Query: 549 TSNALLELQV-AATSQPLNLSKKTPPPSPR 577
+S+ ++ELQV A SQPLNLSKKTPPP+P+
Sbjct: 763 SSSPMVELQVDIADSQPLNLSKKTPPPTPQ 792
>gi|313757603|gb|ADR78567.1| ecdysone response nuclear receptor E75D [Agelena silvatica]
Length = 861
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 282/610 (46%), Positives = 368/610 (60%), Gaps = 99/610 (16%)
Query: 14 KGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHL 73
K + + VRFGRVPKREKA+ILAAMQ+ N EKAL AEL+DE R+L+T+VRAH
Sbjct: 44 KRTKKVQDPSVRFGRVPKREKAKILAAMQK-VNACSQEKALCAELEDELRLLTTIVRAHE 102
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ-GQQELLQDFSERFSPTI 132
+TC +T DK+ ++ +AR P YT CP LACPLNP H L+ G ++DFSERF+P I
Sbjct: 103 ETCDYTRDKVAGLVEKARTQPVYTQCPPQLACPLNPAPHILENGVSHYMEDFSERFAPAI 162
Query: 133 RDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDS 192
+ VVEFAKRIPGF L DDQVTLLKAGVFEVLLVRLACMFD+Q NS+ICLNG+VL R+S
Sbjct: 163 KGVVEFAKRIPGFGFLSQDDQVTLLKAGVFEVLLVRLACMFDAQANSLICLNGQVLRRES 222
Query: 193 IHS-SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKL 251
+H+ SNARFL+DSMFDFAERLN LHLSD+E+GLF S+VVI+ R GLRNKELV +++ KL
Sbjct: 223 LHTASNARFLLDSMFDFAERLNALHLSDSEVGLFCSVVVIASDRPGLRNKELVTKIQNKL 282
Query: 252 ENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQ---- 307
+++L + +HPE N+ +L+ +P LRTLN LHSEKL+A++M + +Q A
Sbjct: 283 KDILQKSVASSHPENPNIYQDLMKKIPGLRTLNTLHSEKLLAYKMEPRNRQAGAVSSIEG 342
Query: 308 ----------------------------------------------QQWHGEDNSKSPTG 321
Q HG S TG
Sbjct: 343 IADHSISNSNAYAVIPHDIWTQYSLVTSHPSCLSQEEDMRSTSPGVQSLHG----GSTTG 398
Query: 322 SSWSDVTMEEVKSPLGSVSSTES-VCSNEVAT---LNEYTSTH--AQNAPLLAAT--LAG 373
S WS ++ +GS S S +C +EV + + ++S+H P + T +
Sbjct: 399 SEWSTTDSKDEHDLVGSPRSIGSGLCVDEVKSPIRTSSFSSSHNYVSEEPWITDTNQVVA 458
Query: 374 AQCPHRNRANSGS---TTDGDR--------------RFRKLDSPTDSGIESGTEKIEKHA 416
R N GS ++ GD + ++DSPTDSGIESG E +
Sbjct: 459 YHQHLTKRENPGSEHGSSSGDEGYYIDSPMKGPVYPKLHRVDSPTDSGIESGKE--HGPS 516
Query: 417 SAPT-SVCSSPRSSFEEK---DFNH---------VEDMPVLKRILQAPPL-DTSSLMDEA 462
+ PT S CSSPRSS +EK D H +EDMPVLKR LQAPPL +T+ LMDEA
Sbjct: 517 TTPTISNCSSPRSSVDEKLKDDHRHSPSQEKQDNIEDMPVLKRALQAPPLVNTNMLMDEA 576
Query: 463 YKPHKKFRALRQKDSAEAEPLHPSLASSHSMLAKSLMEGPR-MTPDQLKRTEIVHNYIMR 521
Y+ HKKFRA R++ + + P SLAS+HS L ++L + PR ++ QLKRT+++HN IMR
Sbjct: 577 YRHHKKFRAARREAESPSSPGQMSLASTHSTLVRTLEQAPRYLSEQQLKRTDLIHNIIMR 636
Query: 522 TDSPPSAYFP 531
++ PS P
Sbjct: 637 NETLPSQQSP 646
>gi|1706557|sp|P50239.1|E75_GALME RecName: Full=Ecdysone-inducible protein E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
gi|508205|gb|AAA19579.1| E75 [Galleria mellonella]
Length = 711
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 300/608 (49%), Positives = 379/608 (62%), Gaps = 96/608 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQ ST T+ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 118 VRFGRVPKREKARILAAMQSST-TRAHEQAAAAELDDGPRLLARVVRAHLDTCEFTRDRV 176
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M AR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 177 AAMRNGARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 229
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 230 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 289
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L++ L V+ QN
Sbjct: 290 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELVERMHSRLKSCLQTVIAQN 349
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W ++ G+
Sbjct: 350 RSDGPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWVEDE------GA 400
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
W+D ++ +SP+GSVSS+ES +T PLLAATLAG R R
Sbjct: 401 LWADSGADDSARSPIGSVSSSESS-----------ETTGDCGTPLLAATLAG-----RRR 444
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 445 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IVGPES 503
Query: 422 VCSSPRSSFEE-----KDFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQK 475
CSSPRSS EE + +DMPVLKR+LQAPPL D SSLMDEAYKPHKKFRA+R+
Sbjct: 504 GCSSPRSSLEEHSDDRRPIAPADDMPVLKRVLQAPPLYDASSLMDEAYKPHKKFRAMRRD 563
Query: 476 DSAEAE-----------------------------PLHPSLASSHSMLAKSLMEGPRMTP 506
+EAE P+ L+S+HS+LAKSLMEGPRMTP
Sbjct: 564 TWSEAEARPGRPTPSPQPPHHPHPASPAHPAHSPRPIRAPLSSTHSVLAKSLMEGPRMTP 623
Query: 507 DQLKRTEIVHNYIMR--TDSPPSAYFPRSWHSSSVIKPAPPATVTSNALLELQVAATS-- 562
+QLKRT+I+ Y+ R T +P R+ + + A PA A L++ VA T
Sbjct: 624 EQLKRTDIIQQYMRRGETGAPTEGCPLRAGGLLTCFRGASPAPQPVIA-LQVDVAETDAP 682
Query: 563 QPLNLSKK 570
QPLNLSKK
Sbjct: 683 QPLNLSKK 690
>gi|427783373|gb|JAA57138.1| Putative ecdysone-induced protein 75b [Rhipicephalus pulchellus]
Length = 624
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 291/571 (50%), Positives = 358/571 (62%), Gaps = 82/571 (14%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ+ N EKALA EL+DE R+ TVVRAH +TC FT+DK+
Sbjct: 110 VRFGRVPKREKAKILAAMQK-VNASSQEKALAVELEDEMRLFDTVVRAHEETCDFTSDKV 168
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ--ELLQDFSERFSPTIRDVVEFAKR 141
P+L RAR HP YT CP LACPLNP + P +G L++DFSERFSP IR VVEFAKR
Sbjct: 169 APLLERARAHPVYTLCPPQLACPLNPTTQPAEGNGAPRLMEDFSERFSPAIRGVVEFAKR 228
Query: 142 IPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARF 200
IPGFSLL DDQVTLLKAGVFEVLLVRLACMFDS+++SM+CLNG+VL+R+S+HS SNARF
Sbjct: 229 IPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDSRSSSMVCLNGQVLLRESLHSASNARF 288
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L+DSMFDFA+RLN L LSD E+GLF S+VVI+P R GLRN +LV++M+ +L +L +
Sbjct: 289 LLDSMFDFADRLNSLGLSDAELGLFCSVVVIAPDRPGLRNVDLVQKMQRRLSEVLQKAVA 348
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPT 320
HP++ LCAEL+ +PDLRTLN LHSEKL+A++M + +QW ++
Sbjct: 349 AGHPDRPQLCAELLKKVPDLRTLNTLHSEKLLAYKM---EPATPPYLEQWGATED----- 400
Query: 321 GSSWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRN 380
WS SP SST S L GA+ P R+
Sbjct: 401 ---WSPA------SPHSVASSTNS--------------------------LDGAKSPVRS 425
Query: 381 RANSGSTTDGD-------RRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEK 433
+ S ST + R+LDSPTDSGI+SG E SA SVCSSPR S ++K
Sbjct: 426 GSFSSSTDYSPDSPAKPFAKVRRLDSPTDSGIDSGKEPGCCTPSA--SVCSSPR-SLDDK 482
Query: 434 DFNHV----EDMPVLKRILQAPPLDTS-SLMDEAYKPHKKFRALRQKDSAEAEPLHPSLA 488
+ EDMPVLKR LQAPPL + LM+EAY+ HKK RA+R+ EA LA
Sbjct: 483 PADEPDRADEDMPVLKRALQAPPLVSPHQLMEEAYRHHKKLRAVRK----EAASSSADLA 538
Query: 489 SSHSMLAKSLMEGPR-MTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI----KPA 543
SSHS L L + PR + QLKRT+++HN IMR + P +F + W S +P+
Sbjct: 539 SSHSTLVGRLQQAPRFLNEQQLKRTDLIHNIIMRNEG-PQGFF-QGWGSPPRCPYSPQPS 596
Query: 544 PPATVTSNALLELQVAATSQPLNLSKKTPPP 574
PP T QPLNLSKK P P
Sbjct: 597 PPLVPTQEG---------PQPLNLSKKPPTP 618
>gi|284157379|gb|ADB79814.1| E75 nuclear receptor [Daphnia pulex]
Length = 954
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 283/549 (51%), Positives = 350/549 (63%), Gaps = 99/549 (18%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N + E++L AE DE +++ +VVRAH++TC FT +K+
Sbjct: 169 VRFGRVPKREKAKILAAMQ-SVNARLAERSLPAEFADEVQLMQSVVRAHMETCDFTREKV 227
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
+ ++ A P YTACP TLACPLNP P GQQ+LLQDFSERF P IRDVVEFAKR+P
Sbjct: 228 QILMADAHRQPNYTACPPTLACPLNPTPAPSNGQQQLLQDFSERFLPAIRDVVEFAKRLP 287
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DD+VTLLK GVFEVLLVRLA MFDSQ+N+M+CLNG++L RD +H SSNARFLM
Sbjct: 288 GFTLLAEDDKVTLLKPGVFEVLLVRLAAMFDSQSNTMLCLNGQLLRRDVLHNSSNARFLM 347
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMF+FAERLN L L+D+E+GLF ++VVI+ R GLRN ELVERM+ KL ++L +VLNQ
Sbjct: 348 DSMFEFAERLNSLALNDSELGLFCAVVVIAADRPGLRNVELVERMQSKLRSVLENVLNQA 407
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQW--HGEDNSKSPT 320
HP++ L EL+ +PDLRTLN LHSEKL+AF+MTEQQQQ QQQ + H + + PT
Sbjct: 408 HPDKAGLFLELLRKIPDLRTLNTLHSEKLLAFKMTEQQQQQQQQQQHYNHHAQRQTPPPT 467
Query: 321 GSSW---SDVTMEE--VKSPLGSVSST--ESVCSNEVATLNEYTSTHAQNAPLLAATLAG 373
S W D EE KSP+GSVSS+ ES+CS T + + PLLAA +AG
Sbjct: 468 ASPWHNDRDSYDEEGGAKSPMGSVSSSGAESICSGVEGT------SSMSDLPLLAA-VAG 520
Query: 374 AQCP------HRNR--------------------------------------ANSGSTTD 389
+ P HR R A +GS
Sbjct: 521 SAVPLMSGGSHRRRLRGPSENGSSSMSSDGEEMDSTGRSLMRMVESPPRTHSAGAGSNAG 580
Query: 390 GD---RRFRKLDSPTDSGIESGTEKIEKHASAP----TSVCSSPRSSFEEK--------- 433
+ RKLDSP DSGIESG ++ EK ++A TS+CSSPRS E+K
Sbjct: 581 SSCPYSKMRKLDSPDDSGIESGVDRYEKMSTASRSTNTSLCSSPRSLLEDKVKEVDEMQQ 640
Query: 434 --------------------DFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRAL 472
+ V+DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRAL
Sbjct: 641 HHQHHHHHHHHAAPSAGGRVGQSSVDDMPVLKRVLQAPPLFDTNSLMDEAYKPHKKFRAL 700
Query: 473 RQKDSAEAE 481
+ ++ E
Sbjct: 701 TRCAGSKGE 709
>gi|45685729|gb|AAS75597.1| transcription factor E75B [Plodia interpunctella]
Length = 694
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 302/609 (49%), Positives = 383/609 (62%), Gaps = 99/609 (16%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+ T+ E AAELDD R+L+ VVRAHLDTC FT +++
Sbjct: 102 VRFGRVPKREKARILAAMQQSSTTRAHEALAAAELDDGPRLLARVVRAHLDTCEFTRERV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 162 AAMRKRARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 214
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 215 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 274
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L++ L V+ QN
Sbjct: 275 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHSRLKSCLQTVIAQN 334
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+ G
Sbjct: 335 RSDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWGEEE------GV 385
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW+D +E +SP+GSVSS+ES +T PLLAATLAG R R
Sbjct: 386 SWADSGADESARSPIGSVSSSESG-----------ETTGDCGTPLLAATLAG-----RRR 429
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 430 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHERIV-GPGS 488
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQK 475
CSSPRSS EE + +DMPVLKR+LQAPPL D LMDEAYKPHKKFRA+R +
Sbjct: 489 GCSSPRSSLEEHSEDRRPMAPADDMPVLKRVLQAPPLYDAGLLMDEAYKPHKKFRAMR-R 547
Query: 476 DSAEAE--------------------PLHP---------SLASSHSMLAKSLMEGPRMTP 506
D+ EAE P+HP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 548 DTGEAEARPVRPTPSPQPPQHPHPASPVHPAHSPRPMRASLSSTHSVLAKSLMEGPRMTP 607
Query: 507 DQLKRTEIVHNYIMRTDSPPSAYFP-RSWHSSSVIKPAPPATVTSNALLELQV----AAT 561
+QLKRT+ + Y+ R ++ + P R+ + + A PA ++L LQV A
Sbjct: 608 EQLKRTDTIQQYMRRGETGAAEGCPLRAGGLLTCYRGASPA---PQSVLALQVDVAEADA 664
Query: 562 SQPLNLSKK 570
QPLNLSKK
Sbjct: 665 PQPLNLSKK 673
>gi|313757601|gb|ADR78566.1| ecdysone response nuclear receptor E75A [Agelena silvatica]
Length = 916
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/601 (46%), Positives = 367/601 (61%), Gaps = 101/601 (16%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ+ N EKAL AEL+DE R+L+T+VRAH +TC +T DK+
Sbjct: 109 VRFGRVPKREKAKILAAMQK-VNACSQEKALCAELEDELRLLTTIVRAHEETCDYTRDKV 167
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQ-GQQELLQDFSERFSPTIRDVVEFAKRI 142
++ +AR P YT CP LACPLNP H L+ G ++DFSERF+P I+ VVEFAKRI
Sbjct: 168 AGLVEKARTQPVYTQCPPQLACPLNPAPHILENGVSHYMEDFSERFAPAIKGVVEFAKRI 227
Query: 143 PGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFL 201
PGF L DDQVTLLKAGVFEVLLVRLACMFD+Q NS+ICLNG+VL R+S+H+ SNARFL
Sbjct: 228 PGFGFLSQDDQVTLLKAGVFEVLLVRLACMFDAQANSLICLNGQVLRRESLHTASNARFL 287
Query: 202 MDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQ 261
+DSMFDFAERLN LHLSD+E+G F S+VVI+ R GLRNKELV +++ KL+++L +
Sbjct: 288 LDSMFDFAERLNALHLSDSEVGPFCSVVVITSDRPGLRNKELVTKIQNKLKDILQKSVAS 347
Query: 262 NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQ-------------- 307
+HPE N+ +L+ +PDLRTLN LHSEKL+A++M + +Q A
Sbjct: 348 SHPENPNIYQDLMKKIPDLRTLNTLHSEKLLAYKMEPRNRQAGAVSSIEGIADRSISNSN 407
Query: 308 ------------------------------------QQWHGEDNSKSPTGSSWSDVTMEE 331
Q HG S TGS W+ ++
Sbjct: 408 AYAVIPHDIWTQYSLVTSHPSCLSQEEDMRSTSPGVQSLHG----GSTTGSEWNTTDSKD 463
Query: 332 VKSPLGSVSSTES-VCSNEVAT---LNEYTSTH--AQNAPLLAATLAGAQCPHRN---RA 382
+GS S S +C +EV + + ++S+H P + T H++ R
Sbjct: 464 EHDLVGSPRSIGSGLCVDEVKSPIRTSSFSSSHNYVSEEPWVTDT-NQVVVYHQHLTKRE 522
Query: 383 NSGS---TTDGDR--------------RFRKLDSPTDSGIESGTEKIEKHASAPT-SVCS 424
N GS ++ GD + ++DSPTDSGIESG E ++ PT S CS
Sbjct: 523 NPGSEHGSSSGDEGYYIDSPMKGPVYPKLHRVDSPTDSGIESGKE--HGPSTTPTISNCS 580
Query: 425 SPRSSFEEK---DFNH---------VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRA 471
SPRSS +EK D H +EDMPVLKR LQAPPL +T+ LMDEAY+ HKKFRA
Sbjct: 581 SPRSSVDEKLKDDHRHSPSQEKQDNIEDMPVLKRALQAPPLVNTNMLMDEAYRHHKKFRA 640
Query: 472 LRQKDSAEAEPLHPSLASSHSMLAKSLMEGPR-MTPDQLKRTEIVHNYIMRTDSPPSAYF 530
R++ + + P SLAS+HS L ++L + PR ++ QLKRT+++HN IMR ++ PS
Sbjct: 641 ARREAESPSSPGQMSLASTHSTLVRTLEQAPRYLSEQQLKRTDLIHNIIMRNETLPSQQS 700
Query: 531 P 531
P
Sbjct: 701 P 701
>gi|385892|gb|AAC60499.1| E75 B [Manduca sexta]
Length = 685
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 305/610 (50%), Positives = 384/610 (62%), Gaps = 96/610 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+ ++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 102 VRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 162 AAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 214
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 215 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 274
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 275 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELVERMHTRLKACLQTVIAQN 334
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+
Sbjct: 335 RPDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSEEE------AV 385
Query: 323 SWSDVTMEEV-KSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW D +E+ +SP+GSVSS+ES + PLLAATLAG R R
Sbjct: 386 SWVDSGADELARSPIGSVSSSESG-----------EAVGDCGTPLLAATLAG-----RRR 429
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ S
Sbjct: 430 LDSRGSVDEEALGVAHLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGT-GS 488
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + + +DMPVLKR+LQAPPL T SLMDEAY+ HKKFRALR
Sbjct: 489 GCSSPRSSLEEHNEDRRPPVSADDMPVLKRVLQAPPLYGGTPSLMDEAYRRHKKFRALR- 547
Query: 475 KDSAEAE-------------------PLHP---------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE P HP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 548 RDTGEAEARTVRPTPSPQPQHPHPANPAHPAHSPRPQRASLSSTHSVLAKSLMEGPRMTP 607
Query: 507 DQLKRTEIVHNYIMRTD-SPPSAYFP-RSWHSSSVIKPAPPATVTSNALLELQVAATSQP 564
+QLKRT+I+ Y+ R + S P+ P R+ + + A PA +L LQV T P
Sbjct: 608 EQLKRTDIIQQYMRRGESSAPAEGCPLRAGGLLTCYRGASPA---PQPVLALQVDVTDAP 664
Query: 565 LNLSKKTPPP 574
LNLSKK+P P
Sbjct: 665 LNLSKKSPSP 674
>gi|6166165|sp|Q08893.2|E75_MANSE RecName: Full=Ecdysone-inducible protein E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
Length = 699
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 305/610 (50%), Positives = 384/610 (62%), Gaps = 96/610 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+ ++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 116 VRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 175
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 176 AAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 228
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 229 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 288
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 289 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELVERMHTRLKACLQTVIAQN 348
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+
Sbjct: 349 RPDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSEEE------AV 399
Query: 323 SWSDVTMEEV-KSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW D +E+ +SP+GSVSS+ES + PLLAATLAG R R
Sbjct: 400 SWVDSGADELARSPIGSVSSSESG-----------EAVGDCGTPLLAATLAG-----RRR 443
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ S
Sbjct: 444 LDSRGSVDEEALGVAHLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGT-GS 502
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + + +DMPVLKR+LQAPPL T SLMDEAY+ HKKFRALR
Sbjct: 503 GCSSPRSSLEEHNEDRRPPVSADDMPVLKRVLQAPPLYGGTPSLMDEAYRRHKKFRALR- 561
Query: 475 KDSAEAE-------------------PLHP---------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE P HP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 562 RDTGEAEARTVRPTPSPQPQHPHPANPAHPAHSPRPQRASLSSTHSVLAKSLMEGPRMTP 621
Query: 507 DQLKRTEIVHNYIMRTD-SPPSAYFP-RSWHSSSVIKPAPPATVTSNALLELQVAATSQP 564
+QLKRT+I+ Y+ R + S P+ P R+ + + A PA +L LQV T P
Sbjct: 622 EQLKRTDIIQQYMRRGESSAPAEGCPLRAGGLLTCYRGASPA---PQPVLALQVDVTDAP 678
Query: 565 LNLSKKTPPP 574
LNLSKK+P P
Sbjct: 679 LNLSKKSPSP 688
>gi|194270637|gb|ACF36863.1| nuclear receptor E75 protein [Fenneropenaeus chinensis]
Length = 798
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/563 (49%), Positives = 366/563 (65%), Gaps = 82/563 (14%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N + E+A+ EL+D+ R+ + ++RAH+DTC FT DK+
Sbjct: 103 VRFGRVPKREKAKILAAMQ-SVNARSQERAVLQELEDDTRVTAAIIRAHMDTCDFTRDKV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PM ++AR HP+YT CP TLACPL+P PLQGQQEL+QDFSERFSP IR VVEFAKR+P
Sbjct: 162 APMHQQARTHPSYTQCPPTLACPLSPRPVPLQGQQELVQDFSERFSPAIRGVVEFAKRLP 221
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS-NARFLM 202
GF L +DQVTLLKAGVFEVLLVRLA MFD++TN+M+CLNG++L R+++H+S NARFLM
Sbjct: 222 GFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNTMLCLNGQLLRREALHTSVNARFLM 281
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+ LF ++VV+SP R GLRN ELV+R++ +L N L V+ ++
Sbjct: 282 DSMFDFAERVNSLSLSDAELALFCAVVVLSPDRPGLRNAELVDRVQRRLINCLRAVVTKH 341
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HPE +L +L+S +PDLRTLN LHSEKL+ ++MTE A W D+S+ S
Sbjct: 342 HPENPSLQRDLLSKIPDLRTLNTLHSEKLLKYKMTEH----TAAGTPW---DDSR----S 390
Query: 323 SWS-------------DVTMEEVKSPLGSVSSTESVCSNEVAT-----LNEYTSTHAQNA 364
SWS E ++SP VS +ES+CS E A+ S + +
Sbjct: 391 SWSMEQESSVGSPSSSYTADEAMRSP---VSCSESICSGESASSGESLCGSEVSGYTELR 447
Query: 365 PLLAATLAGAQCPHRNRANSG-----STTDGDRRFRKLDSPTDSGIESGTEKIEKHASAP 419
P L + H A+SG S RK DSP DSGIESGT++ +K +S
Sbjct: 448 PPFP--LVRRRHDHSEGASSGDEASESPLKCPFSKRKSDSPDDSGIESGTDRSDKLSSP- 504
Query: 420 TSVCSSPRSSFEEK-DFNHVEDMPVLKRILQAPP-LDTSSLMDEAY-KPHKKFRALRQKD 476
SVCSSPRSS +EK + + +DMPVL+R LQAPP ++T LM+EAY KPHKKFR R+++
Sbjct: 505 -SVCSSPRSSIDEKSEEDREDDMPVLRRALQAPPIINTDLLMEEAYNKPHKKFRPQRREE 563
Query: 477 SAE-------------AEPLH-----------------------PSLASSHSMLAKSLME 500
++P H PSLA+ HS LA++L+E
Sbjct: 564 EPHSSQPTSSLLEQTLSQPPHHQTSSLAATHATLASTLASTLGSPSLAAPHSTLARTLLE 623
Query: 501 GPRMTPDQLKRTEIVHNYIMRTD 523
G +++ D ++R +I+H+ IMRT+
Sbjct: 624 GSKISEDAMRRADILHSMIMRTE 646
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 543 APPATVTSNALLELQV-AATSQPLNLSKKTPPPSPR 577
A P + L+ELQV A SQPLNLSKKTPPP+PR
Sbjct: 757 AQPGQREPSPLVELQVDIADSQPLNLSKKTPPPTPR 792
>gi|410591547|gb|AFV74665.1| estradiol receptor-like protein 3, partial [Portunus
trituberculatus]
Length = 538
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 269/520 (51%), Positives = 344/520 (66%), Gaps = 68/520 (13%)
Query: 1 MMEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDD 60
M E++LPILK +L+ H VRFGRVPKREKA+ILAAMQ S N + EKA+ AEL+D
Sbjct: 20 MPEEDLPILKGLLQHGVAPHYMTVRFGRVPKREKAKILAAMQ-SVNARSQEKAVLAELED 78
Query: 61 EQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQEL 120
R+ + ++RAH+DTC FT DK+ PML++AR HP+YT CP TLACPLNP PL GQQEL
Sbjct: 79 NTRVTAAIIRAHMDTCDFTRDKVAPMLQQARAHPSYTQCPPTLACPLNPRPVPLHGQQEL 138
Query: 121 LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180
+QDFSERFSP IR VVEFAKR+PGF L +DQVTLLKAGVFEVLLVRLA MFD++TN+M
Sbjct: 139 VQDFSERFSPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLLVRLAAMFDARTNTM 198
Query: 181 ICLNGEVLVRDSIHSS-NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+CLNG++L R+++H+S NARFL+DSMFDFAERLN L LSD E+ LF ++VV++ R GLR
Sbjct: 199 LCLNGQLLRREALHTSVNARFLVDSMFDFAERLNSLCLSDAELALFCAVVVLAYDRPGLR 258
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
N +LV+R++ L N L V++++HPE NL EL++ +PDLRTLN LHSEKL+ ++MTE
Sbjct: 259 NADLVDRVQRHLVNCLQAVVSKHHPENPNLHHELLAKIPDLRTLNTLHSEKLLKYKMTEH 318
Query: 300 QQQLAAQQQQWHGEDNSKSPTGSSWS-------------DVTMEEVKSPLGSVSSTES-- 344
AA W D+S+ SSWS E ++SP VS +ES
Sbjct: 319 T---AATAGPW---DDSR----SSWSMEQESSVGSPSSSCAADEAMRSP---VSCSESIY 365
Query: 345 ----------VCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDRRF 394
+C +EV+ E PL+ R NS + GD
Sbjct: 366 SGESASSGESICGSEVSGYTELRPPF----PLV----------RRRHDNSEGASSGDEAT 411
Query: 395 ----------RKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEK-DFNHVEDMPV 443
RK DSP DSGIESGT++ +K +S SVCSSPRSS +EK + + EDM V
Sbjct: 412 ESPLKCPFSKRKSDSPDDSGIESGTDRSDKLSSP--SVCSSPRSSIDEKSEEDREEDMSV 469
Query: 444 LKRILQAPP-LDTSSLMDEAYKPHKKFRALRQKDSAEAEP 482
L+R LQAPP ++T LM+EAYKPHKKFRALR+++ + P
Sbjct: 470 LRRALQAPPIINTDLLMEEAYKPHKKFRALRREEEPQLPP 509
>gi|6015044|sp|O01639.1|E75_CHOFU RecName: Full=Ecdysone-inducible protein E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
gi|1945355|gb|AAB52717.1| hormone receptor 75 [Choristoneura fumiferana]
Length = 690
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 299/609 (49%), Positives = 381/609 (62%), Gaps = 105/609 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 118 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 177
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 178 AAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 230
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 231 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 290
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L++ L V+ QN
Sbjct: 291 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHARLKSCLQTVIAQN 350
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+
Sbjct: 351 RADRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWGDEEV------C 401
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
W+D +++ +SPLGSVSS+ES + PLLAATLAG R R
Sbjct: 402 PWADSGVDDSARSPLGSVSSSESG-----------EAPSDCGTPLLAATLAG-----RRR 445
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 446 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IVGPGS 504
Query: 422 VCSSPRSSFEEKDFNH----VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKD 476
CSSPRSS EE + +DMPVLKR+LQAPPL D SSLMDEAYKPHKKFRA+R +D
Sbjct: 505 GCSSPRSSLEEHMEDRRPLAADDMPVLKRVLQAPPLYDASSLMDEAYKPHKKFRAMR-RD 563
Query: 477 SAEAE-----------PLHP--------------------SLASSHSMLAKSLMEGPRMT 505
+ EAE P+HP L+S+HS+LAKSLMEGPRMT
Sbjct: 564 TGEAEARPMRPTPSPQPMHPHPGSPAHPAHPAHSPRPLRAPLSSTHSVLAKSLMEGPRMT 623
Query: 506 PDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVIKPAPPATVTSNALLELQVAATSQPL 565
P+QLKRT+I+ Y+ R ++ + + A P L++ VA QPL
Sbjct: 624 PEQLKRTDIIQQYMRRGEAGEECR-----AGLLLYRGASP--------LQVDVADAPQPL 670
Query: 566 NLSKKTPPP 574
NLSKK+P P
Sbjct: 671 NLSKKSPSP 679
>gi|145228027|gb|ABP48738.1| E75 nuclear receptor [Daphnia magna]
Length = 942
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 278/539 (51%), Positives = 343/539 (63%), Gaps = 96/539 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N + E++L AE DE +++ +VVRAH++TC FT +K+
Sbjct: 171 VRFGRVPKREKAKILAAMQ-SVNARLAERSLPAEFADEVQLMQSVVRAHMETCDFTREKV 229
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
+ ++ A P YTACP TLACPLNP P GQQ+LLQDFSERF P IRDVVEFAKR P
Sbjct: 230 QVLMADAHRQPNYTACPPTLACPLNPTPAPSNGQQQLLQDFSERFLPAIRDVVEFAKRCP 289
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GF+LL DD+VTLLK GVFEVLLVRLA MFDSQ+N+M+CLN ++L RD++H SSNARFLM
Sbjct: 290 GFTLLAEDDKVTLLKPGVFEVLLVRLAAMFDSQSNTMLCLNXQLLRRDALHNSSNARFLM 349
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMF+FAERLN L L+D E+GLF ++VVI+ R GLRN ELVERM+ KL ++L +VLNQ
Sbjct: 350 DSMFEFAERLNSLALNDAELGLFCAVVVIAADRPGLRNVELVERMQSKLRSVLENVLNQA 409
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HP++ L EL+ +PDLRTLN LHSEKL+AF+MTEQQQQ Q H + PT S
Sbjct: 410 HPDKAGLFLELLRKIPDLRTLNTLHSEKLLAFKMTEQQQQQQQQHYNHHPHQQTPPPTAS 469
Query: 323 SW---SDVTMEE--VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCP 377
W D EE KSP+GSVSS+ + + E TS+ + + PLLAA +AG+ P
Sbjct: 470 PWHNDRDSYDEEGGAKSPMGSVSSSGAESISSGV---EGTSSMS-DLPLLAA-VAGSAVP 524
Query: 378 ------HRNRANSGS-------TTDGDR-------------------------------- 392
HR R S ++DG+
Sbjct: 525 LMSGSSHRRRMRGPSENGSSSMSSDGEEMESSGRSMLRMVESPPRTHSAGAGSSAGSVNG 584
Query: 393 -----RFRKLDSPTDSGIESGTEKIEKHASAP----TSVCSSPRSSFEEK---------- 433
+ RKLDSP DSGIESG ++ EK ++A TS+CSSPRSS E+K
Sbjct: 585 SCPYSKMRKLDSPDDSGIESGVDRYEKMSTASRSTNTSLCSSPRSSLEDKVKEVDEMQLH 644
Query: 434 -------------------DFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRAL 472
+ V+DMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRAL
Sbjct: 645 HHHHHHHHATTSAPSVGQGGQSSVDDMPVLKRVLQAPPLFDTNSLMDEAYKPHKKFRAL 703
>gi|113431928|emb|CAL36973.1| ecdysone-induced protein 75B [Aedes aegypti]
gi|403182871|gb|EJY57686.1| AAEL007397-PC [Aedes aegypti]
Length = 1106
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/492 (54%), Positives = 351/492 (71%), Gaps = 55/492 (11%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAH+DTC FT +K+
Sbjct: 307 VRFGRVPKREKARILAAMQQSTQNRGNQRALATELDDQPRLLAAVLRAHMDTCEFTREKV 366
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ PTY+ TLACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 367 TSMRQRARDCPTYSM--PTLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 419
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF +L DD+ TLLKAG+F+ L VRL CMFDSQ NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 420 GFQMLTQDDKFTLLKAGLFDALFVRLICMFDSQINSIICLNGQVMRRDTIQNGANARFLV 479
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+ERM KL+ L +++QN
Sbjct: 480 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELIERMYSKLKACLQSIVSQN 539
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN-SKSPTG 321
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +Q W+ E++ +KSP+
Sbjct: 540 RPDKPEFMQELLRTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQHMWNAEEDLAKSPSS 596
Query: 322 SSWS--DVTMEEV-KSPLGSVSSTESVCSNEVATLNEYT---STHAQNAPLLAATLAGAQ 375
++WS +E+V KSP+ SVSSTES T ++Y+ S+ + +APLLAATL+G Q
Sbjct: 597 NTWSCDGNNVEDVAKSPMSSVSSTESA-----ETTSDYSHIPSSLSASAPLLAATLSG-Q 650
Query: 376 CPHRNRANSGSTTDGD--------------------------RRFRKLDSPTDSGIESGT 409
CP R+RA+SGS+ + D R+RKLDSPTDSGIESG
Sbjct: 651 CPIRHRASSGSSAEDDIIGGTAHLAQNGLTITPVIRSVGTHHVRYRKLDSPTDSGIESGN 710
Query: 410 EKIE-KHASAPTSVCSSPRSSFEEK--DFNH-VEDMPVLKRILQAPPL-DTSSLMDEAYK 464
EK + K S+ +S CSSPRSS E++ D H VE+MPVLKR+LQAPPL DT+SLMDEAYK
Sbjct: 711 EKHDHKPVSSGSSSCSSPRSSLEDQSDDKRHIVENMPVLKRVLQAPPLYDTNSLMDEAYK 770
Query: 465 PHKKFRALRQKD 476
PHKKFRA+R ++
Sbjct: 771 PHKKFRAMRHRE 782
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 493 MLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
+LAKSLME P MTP+Q+KR++I+HNYIMR
Sbjct: 878 VLAKSLMEQPTMTPEQMKRSDIIHNYIMR 906
>gi|113431926|emb|CAL36974.1| ecdysone-induced protein 75A [Aedes aegypti]
gi|403182870|gb|EAT40908.2| AAEL007397-PA [Aedes aegypti]
Length = 1069
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/492 (54%), Positives = 351/492 (71%), Gaps = 55/492 (11%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAH+DTC FT +K+
Sbjct: 270 VRFGRVPKREKARILAAMQQSTQNRGNQRALATELDDQPRLLAAVLRAHMDTCEFTREKV 329
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ PTY+ TLACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 330 TSMRQRARDCPTYSM--PTLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 382
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF +L DD+ TLLKAG+F+ L VRL CMFDSQ NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 383 GFQMLTQDDKFTLLKAGLFDALFVRLICMFDSQINSIICLNGQVMRRDTIQNGANARFLV 442
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+ERM KL+ L +++QN
Sbjct: 443 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELIERMYSKLKACLQSIVSQN 502
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN-SKSPTG 321
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +Q W+ E++ +KSP+
Sbjct: 503 RPDKPEFMQELLRTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQHMWNAEEDLAKSPSS 559
Query: 322 SSWS--DVTMEEV-KSPLGSVSSTESVCSNEVATLNEYT---STHAQNAPLLAATLAGAQ 375
++WS +E+V KSP+ SVSSTES T ++Y+ S+ + +APLLAATL+G Q
Sbjct: 560 NTWSCDGNNVEDVAKSPMSSVSSTESA-----ETTSDYSHIPSSLSASAPLLAATLSG-Q 613
Query: 376 CPHRNRANSGSTTDGD--------------------------RRFRKLDSPTDSGIESGT 409
CP R+RA+SGS+ + D R+RKLDSPTDSGIESG
Sbjct: 614 CPIRHRASSGSSAEDDIIGGTAHLAQNGLTITPVIRSVGTHHVRYRKLDSPTDSGIESGN 673
Query: 410 EKIE-KHASAPTSVCSSPRSSFEEK--DFNH-VEDMPVLKRILQAPPL-DTSSLMDEAYK 464
EK + K S+ +S CSSPRSS E++ D H VE+MPVLKR+LQAPPL DT+SLMDEAYK
Sbjct: 674 EKHDHKPVSSGSSSCSSPRSSLEDQSDDKRHIVENMPVLKRVLQAPPLYDTNSLMDEAYK 733
Query: 465 PHKKFRALRQKD 476
PHKKFRA+R ++
Sbjct: 734 PHKKFRAMRHRE 745
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 493 MLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
+LAKSLME P MTP+Q+KR++I+HNYIMR
Sbjct: 841 VLAKSLMEQPTMTPEQMKRSDIIHNYIMR 869
>gi|157115978|ref|XP_001652743.1| ecdysone-induced protein 75b [Aedes aegypti]
Length = 1045
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/492 (54%), Positives = 351/492 (71%), Gaps = 55/492 (11%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAH+DTC FT +K+
Sbjct: 270 VRFGRVPKREKARILAAMQQSTQNRGNQRALATELDDQPRLLAAVLRAHMDTCEFTREKV 329
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ PTY+ TLACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 330 TSMRQRARDCPTYSM--PTLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 382
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF +L DD+ TLLKAG+F+ L VRL CMFDSQ NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 383 GFQMLTQDDKFTLLKAGLFDALFVRLICMFDSQINSIICLNGQVMRRDTIQNGANARFLV 442
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+ERM KL+ L +++QN
Sbjct: 443 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELIERMYSKLKACLQSIVSQN 502
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN-SKSPTG 321
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +Q W+ E++ +KSP+
Sbjct: 503 RPDKPEFMQELLRTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQHMWNAEEDLAKSPSS 559
Query: 322 SSWS--DVTMEEV-KSPLGSVSSTESVCSNEVATLNEYT---STHAQNAPLLAATLAGAQ 375
++WS +E+V KSP+ SVSSTES T ++Y+ S+ + +APLLAATL+G Q
Sbjct: 560 NTWSCDGNNVEDVAKSPMSSVSSTESA-----ETTSDYSHIPSSLSASAPLLAATLSG-Q 613
Query: 376 CPHRNRANSGSTTDGD--------------------------RRFRKLDSPTDSGIESGT 409
CP R+RA+SGS+ + D R+RKLDSPTDSGIESG
Sbjct: 614 CPIRHRASSGSSAEDDIIGGTAHLAQNGLTITPVIRSVGTHHVRYRKLDSPTDSGIESGN 673
Query: 410 EKIE-KHASAPTSVCSSPRSSFEEK--DFNH-VEDMPVLKRILQAPPL-DTSSLMDEAYK 464
EK + K S+ +S CSSPRSS E++ D H VE+MPVLKR+LQAPPL DT+SLMDEAYK
Sbjct: 674 EKHDHKPVSSGSSSCSSPRSSLEDQSDDKRHIVENMPVLKRVLQAPPLYDTNSLMDEAYK 733
Query: 465 PHKKFRALRQKD 476
PHKKFRA+R ++
Sbjct: 734 PHKKFRAMRHRE 745
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 493 MLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
+LAKSLME P MTP+Q+KR++I+HNYIMR
Sbjct: 817 VLAKSLMEQPTMTPEQMKRSDIIHNYIMR 845
>gi|113431930|emb|CAL36975.1| ecdysone-induced protein 75C [Aedes aegypti]
Length = 1134
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/492 (54%), Positives = 351/492 (71%), Gaps = 55/492 (11%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAH+DTC FT +K+
Sbjct: 335 VRFGRVPKREKARILAAMQQSTQNRGNQRALATELDDQPRLLAAVLRAHMDTCEFTREKV 394
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ PTY+ TLACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 395 TSMRQRARDCPTYSM--PTLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 447
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF +L DD+ TLLKAG+F+ L VRL CMFDSQ NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 448 GFQMLTQDDKFTLLKAGLFDALFVRLICMFDSQINSIICLNGQVMRRDTIQNGANARFLV 507
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+ERM KL+ L +++QN
Sbjct: 508 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELIERMYSKLKACLQSIVSQN 567
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN-SKSPTG 321
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +Q W+ E++ +KSP+
Sbjct: 568 RPDKPEFMQELLRTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQHMWNAEEDLAKSPSS 624
Query: 322 SSWS--DVTMEEV-KSPLGSVSSTESVCSNEVATLNEYT---STHAQNAPLLAATLAGAQ 375
++WS +E+V KSP+ SVSSTES T ++Y+ S+ + +APLLAATL+G Q
Sbjct: 625 NTWSCDGNNVEDVAKSPMSSVSSTESA-----ETTSDYSHIPSSLSASAPLLAATLSG-Q 678
Query: 376 CPHRNRANSGSTTDGD--------------------------RRFRKLDSPTDSGIESGT 409
CP R+RA+SGS+ + D R+RKLDSPTDSGIESG
Sbjct: 679 CPIRHRASSGSSAEDDIIGGTAHLAQNGLTITPVIRSVGTHHVRYRKLDSPTDSGIESGN 738
Query: 410 EKIE-KHASAPTSVCSSPRSSFEEK--DFNH-VEDMPVLKRILQAPPL-DTSSLMDEAYK 464
EK + K S+ +S CSSPRSS E++ D H VE+MPVLKR+LQAPPL DT+SLMDEAYK
Sbjct: 739 EKHDHKPVSSGSSSCSSPRSSLEDQSDDKRHIVENMPVLKRVLQAPPLYDTNSLMDEAYK 798
Query: 465 PHKKFRALRQKD 476
PHKKFRA+R ++
Sbjct: 799 PHKKFRAMRHRE 810
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 493 MLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
+LAKSLME P MTP+Q+KR++I+HNYIMR
Sbjct: 906 VLAKSLMEQPTMTPEQMKRSDIIHNYIMR 934
>gi|170044573|ref|XP_001849917.1| ecdysone-induced protein 75b [Culex quinquefasciatus]
gi|167867671|gb|EDS31054.1| ecdysone-induced protein 75b [Culex quinquefasciatus]
Length = 1111
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/489 (53%), Positives = 348/489 (71%), Gaps = 50/489 (10%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAH++TC FT +K+
Sbjct: 307 VRFGRVPKREKARILAAMQQSTQNRGNQRALATELDDQPRLLAAVLRAHMETCEFTREKV 366
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ TLACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 367 TSMRQRARDCPSYSM--PTLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 419
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFD+Q NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 420 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDTQINSIICLNGQVMRRDAIQNGANARFLV 479
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+ERM KL+ L +++QN
Sbjct: 480 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELIERMYSKLKCCLQSIVSQN 539
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN-SKSPTG 321
P++ EL+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W+ E+ +K+P
Sbjct: 540 RPDKPEFMQELLRTMPDLRTLSTLHTEKLVVFR-TEHKEML--RQQMWNAEEELAKTPNS 596
Query: 322 SSWS---DVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPH 378
++WS + + KSP+GSVSSTES E + + S+ + +APLLAATL+G QCP
Sbjct: 597 NTWSCDGNNVEDAAKSPMGSVSSTESA---ETSEYSHSASSLSASAPLLAATLSG-QCPI 652
Query: 379 RNRANSGSTTDGD--------------------------RRFRKLDSPTDSGIESGTEKI 412
R+RA+SGS+ + D R+RKLDSPTDSGIESG EK+
Sbjct: 653 RHRASSGSSAEDDIIGGTAHLAQNGLTITPVIRSVGTHHVRYRKLDSPTDSGIESGNEKL 712
Query: 413 E-KHASAPTSVCSSPRSSFEEK--DFNH-VEDMPVLKRILQAPPL-DTSSLMDEAYKPHK 467
+ K S+ +S CSSPRSS E++ + H VE+MPVLKR+LQAPPL DT+SLMDEAYKPHK
Sbjct: 713 DHKPVSSGSSSCSSPRSSLEDQSDEKRHIVENMPVLKRVLQAPPLYDTNSLMDEAYKPHK 772
Query: 468 KFRALRQKD 476
KFRA+R ++
Sbjct: 773 KFRAMRHRE 781
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 27/29 (93%)
Query: 493 MLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
+LAKSLME P MTP+Q+KR++I+HNYIMR
Sbjct: 874 VLAKSLMEQPTMTPEQMKRSDIIHNYIMR 902
>gi|307199135|gb|EFN79845.1| Nuclear hormone receptor E75 [Harpegnathos saltator]
Length = 929
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/276 (75%), Positives = 233/276 (84%), Gaps = 1/276 (0%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQ+ ++ EK +AAEL++EQR+L+TVVRAHLDTC FT DK+
Sbjct: 117 VRFGRVPKREKARILAAMQQTPPSRSQEKVVAAELENEQRLLATVVRAHLDTCDFTRDKV 176
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P+L RARE P YTACP TLACPLNPN PL GQQELLQDFS+RFSP IR VVEFAKRIP
Sbjct: 177 APILARARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRIP 236
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL DDQVTLLKAGVFEVLLVRLACMFD+QTNSMICLNG+VL R+SIH SSNARFLM
Sbjct: 237 GFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARFLM 296
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L LSD E+GLF S+VVI+ R GLRN +LVERM KL N L VL QN
Sbjct: 297 DSMFDFAERVNSLGLSDAELGLFCSVVVIAADRPGLRNTDLVERMHNKLRNALQTVLAQN 356
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
HP+ ++ EL+ +PDLRTLN LHSEKL+AF+MTE
Sbjct: 357 HPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTE 392
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 159/270 (58%), Positives = 182/270 (67%), Gaps = 70/270 (25%)
Query: 322 SSWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY------TSTHAQNAPLLAATLAGA 374
SS SDVT++E VKSPLGSVSSTES CS EVA+L EY +S HA +APLLAATLAG
Sbjct: 472 SSASDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVAPPSSHHASSAPLLAATLAGG 531
Query: 375 QCPHRNRANSGSTTDGDR-----------------RFRKLDSPTDSGIESGTEKIEK--- 414
CPHR RANSGST+ GD RFRKLDSP+DSGIESGTEK +K
Sbjct: 532 LCPHRLRANSGSTSSGDDELHRSAMSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPAS 591
Query: 415 --HASAPTSVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRA 471
+SAPTSVCSSPRS E+K+ VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRA
Sbjct: 592 SSASSAPTSVCSSPRS--EDKE---VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRA 646
Query: 472 LRQKDSAEAEP------------LHPS-----------------------LASSHSMLAK 496
LRQKDSAEAEP LH + L+S+HS LA+
Sbjct: 647 LRQKDSAEAEPAVVVQHTQSQLHLHLTSPPARSPPATQTAQVQCQQTASLLSSTHSTLAR 706
Query: 497 SLMEGPRMTPDQLKRTEIVHNYIMRTDSPP 526
SLMEGPRMTP+QLKRT+I+HN+IM ++ P
Sbjct: 707 SLMEGPRMTPEQLKRTDIIHNFIMHGEASP 736
>gi|24666210|ref|NP_730323.1| Ecdysone-induced protein 75B, isoform D [Drosophila melanogaster]
gi|23093219|gb|AAN11689.1| Ecdysone-induced protein 75B, isoform D [Drosophila melanogaster]
gi|189182190|gb|ACD81871.1| RE09515p [Drosophila melanogaster]
gi|308522793|gb|ADO33197.1| MIP24744p [Drosophila melanogaster]
Length = 906
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/410 (54%), Positives = 295/410 (71%), Gaps = 33/410 (8%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M +ELPILK ILKGN YHNAPVRFGRVPKREKARILAAMQQST + ++ALA ELDD+
Sbjct: 1 MGEELPILKGILKGNVNYHNAPVRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQ 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ V+RAHL+TC FT +K+ M +RAR+ P+Y+ P+ LACPLNP + LQ +QE
Sbjct: 61 PRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYS-MPTLLACPLNP-APELQSEQE-- 116
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
FS+RF+ IR V++FA IPGF LL DD+ TLLKAG+F+ L VRL CMFDS NS+I
Sbjct: 117 --FSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSII 174
Query: 182 CLNGEVLVRDSI-HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+V+ RD+I + +NARFL+DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN
Sbjct: 175 CLNGQVMRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRN 234
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
EL+E+M +L+ L +++ QN P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE +
Sbjct: 235 LELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHK 293
Query: 301 QQLAAQQQQWHGEDN-------SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV------- 345
+ L +QQ W ED +KSP+G SW+D + +E KSPLGSVSSTES
Sbjct: 294 ELL--RQQMWSMEDGNNSDGQQNKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSP 350
Query: 346 CSNEVATLN------EYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
S++ ++ + S A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 351 SSSQPQGVSLPSPPQQQPSALASSAPLLAATLSGG-CPLRNRANSGSSGD 399
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 469 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 528
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 529 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 588
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 589 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 648
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 649 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 700
>gi|195494681|ref|XP_002094942.1| GE22099 [Drosophila yakuba]
gi|194181043|gb|EDW94654.1| GE22099 [Drosophila yakuba]
Length = 907
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/410 (54%), Positives = 294/410 (71%), Gaps = 33/410 (8%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M +ELPILK ILKGN YHNAPVRFGRVPKREKARILAAMQQST + ++ALA ELDD+
Sbjct: 1 MGEELPILKGILKGNVNYHNAPVRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQ 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ V+RAHL+TC FT +K+ M +RAR+ P+Y+ P+ LACPLNP LQ +QE
Sbjct: 61 PRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYS-MPTLLACPLNPAPE-LQSEQE-- 116
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
FS+RF+ IR V++FA IPGF LL DD+ TLLKAG+F+ L VRL CMFDS NS+I
Sbjct: 117 --FSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSII 174
Query: 182 CLNGEVLVRDSI-HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+V+ RD+I + +NARFL+DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN
Sbjct: 175 CLNGQVMRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRN 234
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
EL+E+M +L+ L +++ QN P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE +
Sbjct: 235 LELIEKMYSRLKGCLQYIVAQNRPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHK 293
Query: 301 QQLAAQQQQWHGEDN-------SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV------- 345
+ L +QQ W ED +KSP+G SW+D + +E KSPLGSVSS+ES
Sbjct: 294 ELL--RQQMWSMEDGNNSDGQQNKSPSG-SWADAMDVEAAKSPLGSVSSSESADLDYGSP 350
Query: 346 CSNEVATLN------EYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
S++ ++ + S A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 351 SSSQPQGVSLPSPPQQQPSALASSAPLLAATLSGG-CPLRNRANSGSSGD 399
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 110/232 (47%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAP---------------------------- 419
T G R+RKLDSPTDSGIESG EK E A +
Sbjct: 470 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHSQ 529
Query: 420 -------TSVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
+ V SP S + +H VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 530 VVQHPQLSVVAVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 589
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 590 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPTASSAAAGNPAQS 649
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 650 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 701
>gi|195379152|ref|XP_002048344.1| GJ13918 [Drosophila virilis]
gi|194155502|gb|EDW70686.1| GJ13918 [Drosophila virilis]
Length = 942
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/415 (53%), Positives = 289/415 (69%), Gaps = 38/415 (9%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M +ELPILK ILKGN YHNAPVRFGRVPKREKARILAAMQQST + ++ALA ELDD+
Sbjct: 1 MGEELPILKGILKGNVNYHNAPVRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQ 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ V+RAHL+TC FT +K+ M +RAR+ P+Y+ P+ LACPLNP LQ +QE
Sbjct: 61 PRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE-- 116
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
FS+RF+ IR V++FA IPGF LL DD+ TLLKAG+F+ L VRL CMFDS NS+I
Sbjct: 117 --FSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSII 174
Query: 182 CLNGEVLVRDSI-HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+V+ RD+I + +NARFL+DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN
Sbjct: 175 CLNGQVMRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRN 234
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
EL+E+M +L+ L +++QN P+Q + A+L+ +PDLRTL+ LH+EKLV F+ TE +
Sbjct: 235 LELIEKMYSRLKGCLQCIVSQNRPDQPDFLAKLLDTMPDLRTLSTLHTEKLVVFR-TEHK 293
Query: 301 QQLAAQQQQWHGEDN---SKSPTGSSWSDVTMEEVKSPLGSVSSTESV-------CSNEV 350
+ L +QQ W ED SKSP +SW + +E KSPLGSVSSTES S ++
Sbjct: 294 ELL--RQQMWSMEDGDAASKSP-AASWDAMDVEAAKSPLGSVSSTESADLDYGTPSSTQL 350
Query: 351 ATLNEYT----------------STHAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
S A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 351 QQQQPQQQQQQAATTPQSHHGAPSALASSAPLLAATLSGG-CPLRNRANSGSSGD 404
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 80/158 (50%), Gaps = 46/158 (29%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHA------------------------------- 416
T G R+RKLDSPTDSGIESG EK E A
Sbjct: 460 TSGATRYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAQAATA 519
Query: 417 ------SAPTSVCSSPR-SSFEEKDFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKK 468
S S SP+ SS VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKK
Sbjct: 520 AGVAQLSVSVSPVRSPQPSSSANLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKK 579
Query: 469 FRALRQKDSAEAEPLHPSLASSHSMLAKSLMEGPRMTP 506
FRALR ++ AE +SS SM A S PR +P
Sbjct: 580 FRALRHREFETAE---ADASSSTSMPAHS----PRQSP 610
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 33/36 (91%)
Query: 486 SLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
S+AS+HS+LAKSLM PRMTP+Q+KR++I+ NY+MR
Sbjct: 679 SMASTHSVLAKSLMAEPRMTPEQMKRSDIIQNYLMR 714
>gi|391327316|ref|XP_003738149.1| PREDICTED: nuclear hormone receptor E75-like [Metaseiulus
occidentalis]
Length = 667
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/514 (48%), Positives = 328/514 (63%), Gaps = 38/514 (7%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ+ N EK L+AEL+DE R+ +VV+AH +TC FT+DKI
Sbjct: 131 VRFGRVPKREKAKILAAMQK-VNASSQEKQLSAELEDEMRLFQSVVQAHEETCEFTSDKI 189
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PM+ RAR P Y CPS LACPLNP S G ++DFSERFSP IR VVEFAKRIP
Sbjct: 190 APMIERARVDPVYARCPSGLACPLNPQSP--DGTNRFMEDFSERFSPAIRGVVEFAKRIP 247
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SSNARFLM 202
GFSLL +DQVTLLKAGVFEVLLVRLA +FDS TN MI LNG+VL RDS+H SSNARFL+
Sbjct: 248 GFSLLAQEDQVTLLKAGVFEVLLVRLARLFDSATNQMITLNGQVLRRDSLHSSSNARFLL 307
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMF+FAER+N + LSD +I +FS+ V+I+ R GLRN ELV +++ +L +L +
Sbjct: 308 DSMFEFAERMNSVGLSDPQIAIFSATVIIAADRPGLRNSELVHKIQRRLMEVLQKAVCPT 367
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
E ++ EL+ +PDLRTLN LHSEKL+A++M E S +P S
Sbjct: 368 -AEDNSVYTELLKKIPDLRTLNSLHSEKLLAYKM----------------EPQSTTPPYS 410
Query: 323 S---WSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHR 379
+ W+ V + P + + S +T + ++ A +P+ + + +
Sbjct: 411 APEPWTGVQPTPLNVPCAAHERWSPIASPHSSTSSLDSALAAPKSPVRTNSFSSSTSSTS 470
Query: 380 NRANSGSTTDGDRRFR--KLDSPTDSGIESGTEKIEKHASA--PTSVCSSPRSSFEEKDF 435
+T R FR ++DSPTDSGIESG E H S TSVCSSPRS+ E +
Sbjct: 471 ELTMVVDST-MYRPFRAARVDSPTDSGIESGKE----HGSCTPTTSVCSSPRSTDEIEHA 525
Query: 436 NHVEDMPVLKRILQAPPLDT-SSLMDEAYKPHKKFRALRQKDSAEAEPLHPS--LASSHS 492
+DMPVLKR LQAPPL + + LM+EAY+ HKK RA Q A + P + LA++HS
Sbjct: 526 ATDDDMPVLKRALQAPPLVSPNQLMEEAYRHHKKLRAA-QAVRAHSPPASSTTDLATAHS 584
Query: 493 MLAKSLMEGPR-MTPDQLKRTEIVHNYIMRTDSP 525
L +L + P+ + Q+KRT+++HN IMR ++P
Sbjct: 585 TLVGALQQAPKFLNEQQMKRTDLIHNIIMRNEAP 618
>gi|198466315|ref|XP_002135156.1| GA23402 [Drosophila pseudoobscura pseudoobscura]
gi|198150543|gb|EDY73783.1| GA23402 [Drosophila pseudoobscura pseudoobscura]
Length = 974
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/409 (54%), Positives = 292/409 (71%), Gaps = 32/409 (7%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M +ELPILK ILKGN YHNAPVRFGRVPKREKARILAAMQQST + ++ALA ELDD+
Sbjct: 1 MGEELPILKGILKGNVNYHNAPVRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQ 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ V+RAHL+TC FT +K+ M +RAR+ P+Y+ P+ LACPLNP LQ +QE
Sbjct: 61 PRLLAAVLRAHLETCEFTKEKVSAMRQRARDCPSYS-MPTLLACPLNPAPE-LQSEQE-- 116
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
FS+RF+ IR V++FA IPGF LL DD+ TLLKAG+F+ L VRL CMFDS NS+I
Sbjct: 117 --FSQRFAHVIRGVIDFAGMIPGFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSII 174
Query: 182 CLNGEVLVRDSI-HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
CLNG+V+ RD+I + +NARFL+DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN
Sbjct: 175 CLNGQVMRRDAIQNGANARFLVDSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRN 234
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
EL+E+M +L+ L +++ QN P+Q + A+L+ +PDLRTL+ LH+EKLV F+ TE +
Sbjct: 235 LELIEKMYSRLKGCLQYIVAQNRPDQPDFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHK 293
Query: 301 QQLAAQQQQW---HGED--NSKSPTGSSWSD-VTMEEVKSPLGSVSSTESVCSNEVATLN 354
+ L +QQ W G+D + KSP +SW+D + +E KSPLGSVSSTES + + +
Sbjct: 294 ELL--RQQMWSMEEGQDPTSGKSP-AASWADAMDVEAAKSPLGSVSSTESADLDYGSPSS 350
Query: 355 EYT--------------STHAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
S A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 351 SSMQQQVAQAAASPPQPSALASSAPLLAATLSGG-CPLRNRANSGSSGD 398
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 11/72 (15%)
Query: 438 VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQK--DSAEAEPLHPSLASSHSML 494
VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALR + ++AEA+ + +S+HS+
Sbjct: 582 VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRHREFETAEAD----ASSSTHSLG 637
Query: 495 AKSLMEGPRMTP 506
A S PR +P
Sbjct: 638 ALS----PRQSP 645
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 486 SLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R
Sbjct: 701 SMASSHSVLAKSLMAEPRMTPEQIKRSDIIQNYLKR 736
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 21/30 (70%)
Query: 387 TTDGDRRFRKLDSPTDSGIESGTEKIEKHA 416
T R+RKLDSPTDSGIESG EK E A
Sbjct: 487 TAGAASRYRKLDSPTDSGIESGNEKNECKA 516
>gi|6015045|sp|O77245.1|E75_METEN RecName: Full=Nuclear hormone receptor E75; AltName: Full=Nuclear
receptor subfamily 1 group D member 3
gi|3694976|gb|AAC71770.1| nuclear hormone receptor E75 [Metapenaeus ensis]
Length = 606
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 297/435 (68%), Gaps = 43/435 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N K E+A+ AEL+D+ R+ + ++RAH+DTC FT DK+
Sbjct: 103 VRFGRVPKREKAKILAAMQ-SVNAKSQERAVLAELEDDTRVTAAIIRAHMDTCDFTRDKV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PML++AR HP+YT CP LACPLNP PL GQQEL+QDFSE P IR VVEFAKR+P
Sbjct: 162 APMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQELVQDFSEALLPAIRGVVEFAKRLP 221
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS-NARFLM 202
GF L +DQVTLLKAGVFEVLLVRLA MFD++TN+M+CLNG+++ R+++H+S NARFLM
Sbjct: 222 GFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCLNGQLVRREALHTSVNARFLM 281
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L L+D E+ LF ++VV++P R GLRN ELVER+ +L N L V++++
Sbjct: 282 DSMFDFAERVNSLALNDAELALFCAVVVLAPDRPGLRNAELVERVHRRLVNCLQAVVSKH 341
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HPE NL +L+S +PDLRTLN LHSEKL+ ++MTE A W D+S+ S
Sbjct: 342 HPENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKMTEH----TAAGAPW---DDSR----S 390
Query: 323 SWS-------------DVTMEEVKSPLGSVSSTESVCSNEVAT-----LNEYTSTHAQNA 364
SWS T E ++SP VS +ES+CS E A+ S + +
Sbjct: 391 SWSMEQESSVGSPSSSYTTDEAMRSP---VSCSESICSGESASSGESLCGSEVSGYTELR 447
Query: 365 PLLAATLAGAQCPHRNRANSGS-TTDGDRRF----RKLDSPTDSGIESGTEKIEKHASAP 419
P LA + H A+SG T+ + RK DSP DSGIESGT++ +K +S
Sbjct: 448 PPFP--LARRRHDHSEGASSGDEATESPLKCPFSKRKSDSPDDSGIESGTDRSDKLSSP- 504
Query: 420 TSVCSSPRSSFEEKD 434
SVCSSPRSS +EK+
Sbjct: 505 -SVCSSPRSSIDEKE 518
>gi|345481360|ref|XP_003424347.1| PREDICTED: LOW QUALITY PROTEIN: ecdysone-induced protein 75B,
isoform B [Nasonia vitripennis]
Length = 834
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/239 (78%), Positives = 207/239 (86%), Gaps = 1/239 (0%)
Query: 1 MMEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDD 60
+M DELPILK IL G YHNAPVRFGRVPKREKARILAAMQQS++++ EKA+AAEL+D
Sbjct: 296 VMGDELPILKGILNGVVNYHNAPVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELED 355
Query: 61 EQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQEL 120
EQR+L+TVVRAHLDTC FT DK+ P+L RARE P YTACP TLACPLNPN PL GQQEL
Sbjct: 356 EQRLLATVVRAHLDTCDFTRDKVAPVLARARETPNYTACPPTLACPLNPNPQPLTGQQEL 415
Query: 121 LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180
LQDFS+RFSP IR VVEFAKRIPGFSLL DDQVTLLKAGVFEVLLVRLACMFD+QT SM
Sbjct: 416 LQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTASM 475
Query: 181 ICLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
ICLNG+VL R+SIH SSNARFLMDSMFDFAER+N L LSD E+GLF S+VVI+ R GL
Sbjct: 476 ICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGL 534
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/252 (62%), Positives = 179/252 (71%), Gaps = 42/252 (16%)
Query: 311 HGEDNSKSPTGS--SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEY------TSTHA 361
H + P GS S SDV ++E VKSPLGSVSSTES CS EVA+L EY + HA
Sbjct: 561 HWPMDCDEPVGSWGSASDVALDEAVKSPLGSVSSTESTCSGEVASLTEYQQHVVASGHHA 620
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTDGDR-----------------RFRKLDSPTDSG 404
+APLLAATLAG CPHR RANSGST+ GD RFRKLDSP+DSG
Sbjct: 621 SSAPLLAATLAGGLCPHRRRANSGSTSSGDDELHRASLAKTPQPPQCPRFRKLDSPSDSG 680
Query: 405 IESGTEKIEKHASAPTS-----VCSSPRSSFEEKDFNHVEDMPVLKRILQAPPL-DTSSL 458
IESGTEK +K AS+ TS VCSSPRS+ E+K+ VEDMPVLKR+LQAPPL DT+SL
Sbjct: 681 IESGTEKPDKPASSSTSSAPTSVCSSPRSA-EDKE---VEDMPVLKRVLQAPPLYDTNSL 736
Query: 459 MDEAYKPHKKFRALRQKDSAEAEPLHPS------LASSHSMLAKSLMEGPRMTPDQLKRT 512
MDEAYKPHKKFRALRQKDSAEAEP L+S+HS LAKSLME PRMT +QLKRT
Sbjct: 737 MDEAYKPHKKFRALRQKDSAEAEPASQCPQTASLLSSTHSTLAKSLMESPRMTAEQLKRT 796
Query: 513 EIVHNYIMRTDS 524
+I+HNYIMR ++
Sbjct: 797 DIIHNYIMRGEA 808
>gi|24666202|ref|NP_730322.1| Ecdysone-induced protein 75B, isoform C [Drosophila melanogaster]
gi|71153514|sp|P17671.2|E75BC_DROME RecName: Full=Ecdysone-induced protein 75B, isoforms C/D; AltName:
Full=E75-A; AltName: Full=Nuclear receptor subfamily 1
group D member 3, isoforms C/D
gi|23093217|gb|AAN11687.1| Ecdysone-induced protein 75B, isoform C [Drosophila melanogaster]
Length = 1199
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 276/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 316 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 375
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 376 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 429
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 430 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 489
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 490 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 549
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 550 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 606
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 607 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 665
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 666 SSAPLLAATLSGG-CPLRNRANSGSSGD 692
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 762 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 821
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 822 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 881
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 882 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 941
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 942 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 993
>gi|24666206|ref|NP_524133.2| Ecdysone-induced protein 75B, isoform A [Drosophila melanogaster]
gi|71153512|sp|P17672.2|E75BA_DROME RecName: Full=Ecdysone-induced protein 75B, isoform A; Short=E75-B;
AltName: Full=Nuclear receptor subfamily 1 group D
member 3, isoform A
gi|23093218|gb|AAN11688.1| Ecdysone-induced protein 75B, isoform A [Drosophila melanogaster]
Length = 1355
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 277/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 472 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 531
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 532 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 585
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 586 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 645
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 646 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 705
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 706 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 762
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 763 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 821
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 822 SSAPLLAATLSGG-CPLRNRANSGSSGD 848
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 918 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 977
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 978 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1037
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 1038 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1097
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1098 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1149
>gi|194748054|ref|XP_001956464.1| GF25223 [Drosophila ananassae]
gi|190623746|gb|EDV39270.1| GF25223 [Drosophila ananassae]
Length = 1399
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/390 (53%), Positives = 273/390 (70%), Gaps = 35/390 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 490 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 549
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 550 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 603
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 604 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 663
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 664 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 723
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQW--------HGED 314
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W G+
Sbjct: 724 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 780
Query: 315 NSKSPTGSSWSD-VTMEEVKSPLGSVSSTESV--------------CSNEVATLNEYTST 359
NSKSP+G SW+D + +E KSPLGSVSS+ES + S+
Sbjct: 781 NSKSPSG-SWADAMDVEAAKSPLGSVSSSESADLDYGSPSSSQPQGVGLPSPPQQQQPSS 839
Query: 360 HAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 840 LASSAPLLAATLSGG-CPLRNRANSGSSGD 868
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 70/138 (50%), Gaps = 44/138 (31%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAP---------------------------- 419
T G R+RKLDSPTDSGIESG EK E A +
Sbjct: 943 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAVAIAA 1002
Query: 420 ----------TSVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL-DTSSLMDEAY 463
+ V SP S + H VEDMPVLKR+LQAPPL DT+SLMDEAY
Sbjct: 1003 QVGQVQHPQLSVVAVSPVRSPQPSSSGHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAY 1062
Query: 464 KPHKKFRALRQKDSAEAE 481
KPHKKFRALR ++ AE
Sbjct: 1063 KPHKKFRALRHREFETAE 1080
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 486 SLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1147 SMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1185
>gi|195356574|ref|XP_002044735.1| GM11643 [Drosophila sechellia]
gi|194134423|gb|EDW55939.1| GM11643 [Drosophila sechellia]
Length = 1351
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 277/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 468 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 527
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 528 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 581
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 582 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 641
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 642 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 701
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 702 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 758
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 759 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 817
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 818 SSAPLLAATLSGG-CPLRNRANSGSSGD 844
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 110/232 (47%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAP---------------------------- 419
T G R+RKLDSPTDSGIESG EK E A +
Sbjct: 914 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 973
Query: 420 -------TSVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
+ V SP S + +H VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 974 VVQHPQLSVVAVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1033
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 1034 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1093
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1094 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1145
>gi|24666198|ref|NP_730321.1| Ecdysone-induced protein 75B, isoform B [Drosophila melanogaster]
gi|386771372|ref|NP_001246821.1| Ecdysone-induced protein 75B, isoform E [Drosophila melanogaster]
gi|386771374|ref|NP_001246822.1| Ecdysone-induced protein 75B, isoform F [Drosophila melanogaster]
gi|71153513|sp|P13055.2|E75BB_DROME RecName: Full=Ecdysone-induced protein 75B, isoform B; AltName:
Full=E75-C; AltName: Full=Nuclear receptor subfamily 1
group D member 3, isoform B
gi|23093216|gb|AAF49282.3| Ecdysone-induced protein 75B, isoform B [Drosophila melanogaster]
gi|383291995|gb|AFH04492.1| Ecdysone-induced protein 75B, isoform E [Drosophila melanogaster]
gi|383291996|gb|AFH04493.1| Ecdysone-induced protein 75B, isoform F [Drosophila melanogaster]
Length = 1412
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 276/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 529 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 588
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 589 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 642
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 643 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 702
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 703 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 762
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 763 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 819
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 820 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 878
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 879 SSAPLLAATLSGG-CPLRNRANSGSSGD 905
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 103/232 (44%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKD--------FNH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 975 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 1034
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 1035 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1094
Query: 467 KKFRALRQK--DSAEAEP------------------------------------------ 482
KKFRALR + ++AEA+
Sbjct: 1095 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1154
Query: 483 -LHPSLASS---------HSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH L S HS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1155 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1206
>gi|7911|emb|CAA35923.1| unnamed protein product [Drosophila melanogaster]
Length = 1237
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 276/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 316 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 375
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 376 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 429
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 430 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 489
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 490 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 549
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 550 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 606
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 607 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 665
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 666 SSAPLLAATLSGG-CPLRNRANSGSSGD 692
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 762 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 821
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 822 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 881
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 882 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 941
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 942 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 993
>gi|7913|emb|CAA35924.1| unnamed protein product [Drosophila melanogaster]
Length = 1394
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 277/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 473 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 532
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 533 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 586
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 587 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 646
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 647 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 706
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 707 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 763
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 764 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 822
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 823 SSAPLLAATLSGG-CPLRNRANSGSSGD 849
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 919 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 978
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 979 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1038
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 1039 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1098
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1099 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1150
>gi|195441651|ref|XP_002068617.1| GK20573 [Drosophila willistoni]
gi|194164702|gb|EDW79603.1| GK20573 [Drosophila willistoni]
Length = 930
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/393 (52%), Positives = 272/393 (69%), Gaps = 38/393 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 409 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 468
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RARE P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 469 SAMRQRARECPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 522
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 523 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 582
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L ++++QN
Sbjct: 583 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVSQN 642
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
P+Q + A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED + + T S
Sbjct: 643 RPDQPDFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDANVNTTSS 699
Query: 323 ---------SWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYT---------------- 357
W + +E KSPLGSVSSTES + AT+ +
Sbjct: 700 GKGSPHSAGGWDAMDVEAAKSPLGSVSSTES-GDLDYATVASSSSLMQQQQHQTSSTTAQ 758
Query: 358 -STHAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
S A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 759 PSALASSAPLLAATLSGG-CPLRNRANSGSSGD 790
>gi|194871629|ref|XP_001972875.1| GG15765 [Drosophila erecta]
gi|190654658|gb|EDV51901.1| GG15765 [Drosophila erecta]
Length = 1370
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/388 (53%), Positives = 277/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 478 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 537
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 538 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 591
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 592 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 651
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 652 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 711
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 712 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 768
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSS+ES S++ ++ + S A
Sbjct: 769 NKSPSG-SWADAMDVEAAKSPLGSVSSSESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 827
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 828 SSAPLLAATLSGG-CPLRNRANSGSSGD 854
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 110/232 (47%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAP---------------------------- 419
T G R+RKLDSPTDSGIESG EK E A +
Sbjct: 925 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHSQ 984
Query: 420 -------TSVCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
+ V SP S + +H VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 985 VAQHPQLSVVAVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1044
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 1045 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1104
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1105 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1156
>gi|189182188|gb|ACD81870.1| RE08859p [Drosophila melanogaster]
Length = 1199
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/388 (53%), Positives = 275/388 (70%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 316 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 375
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 376 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 429
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 430 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 489
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 490 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 549
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EK V F+ TE ++ L +QQ W ED
Sbjct: 550 RPDQPEFLAKLLETMPDLRTLSNLHTEKPVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 606
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 607 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 665
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 666 SSAPLLAATLSGG-CPLRNRANSGSSGD 692
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 104/232 (44%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKD--------FNH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 762 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 821
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 822 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 881
Query: 467 KKFRALRQK--DSAEAEP------------------------------------------ 482
KKFRALR++ ++AEA+
Sbjct: 882 KKFRALRRREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 941
Query: 483 -LHPSLASS---------HSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH L S HS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 942 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 993
>gi|195022280|ref|XP_001985545.1| GH14445 [Drosophila grimshawi]
gi|193899027|gb|EDV97893.1| GH14445 [Drosophila grimshawi]
Length = 1775
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/383 (54%), Positives = 271/383 (70%), Gaps = 28/383 (7%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 786 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 845
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RARE P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 846 SAMRQRARECPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 899
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 900 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 959
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++QN
Sbjct: 960 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQCIVSQN 1019
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED---NSKSP 319
P+Q + A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+ SKSP
Sbjct: 1020 RPDQPDFLAKLLDTMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEEADAASKSP 1076
Query: 320 TGSSWSDVTMEEVKSPLGSVSSTESV-------------CSNEVATLNEYTSTHAQNAPL 366
+SW + +E KSPLGSVSSTES S + + S A +APL
Sbjct: 1077 -AASWDAMDVEAAKSPLGSVSSTESTDLDYGTPSSTQLQQSQQQQQQQQPPSALASSAPL 1135
Query: 367 LAATLAGAQCPHRNRANSGSTTD 389
LAATL+G CP RNRANSGS+ D
Sbjct: 1136 LAATLSGG-CPLRNRANSGSSGD 1157
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 86/161 (53%), Gaps = 47/161 (29%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHA-----------------------------SA 418
T G R+RKLDSPTDSGIESG EK E A A
Sbjct: 1265 TSGASRYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAVVAQA 1324
Query: 419 PTSVCSSPRSSFEEKDFNH-------VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFR 470
+ V SP S + + VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFR
Sbjct: 1325 VSGVSVSPVRSPQPSSSANLNLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFR 1384
Query: 471 ALRQK--DSAEAEPLHPSLASSHSMLAKSLMEGPRMTPDQL 509
ALR + +SAEA+ + +S+ SM A S PR +P +
Sbjct: 1385 ALRHREFESAEAD----ASSSTTSMPAHS----PRQSPTHI 1417
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 33/36 (91%)
Query: 486 SLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
S+AS+HS+LAKSLM PRMTP+Q+KR++I+ NY+MR
Sbjct: 1478 SMASTHSVLAKSLMAEPRMTPEQIKRSDIIQNYLMR 1513
>gi|238558276|gb|ACR45972.1| ecdysone inducible nuclear hormone receptor [Acyrthosiphon pisum]
Length = 319
Score = 367 bits (943), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 176/263 (66%), Positives = 215/263 (81%), Gaps = 1/263 (0%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARI+AAMQ S+N+K EKA AEL+D+QR++++VVRAHL+TC FT+DK+
Sbjct: 57 VRFGRVPKREKARIMAAMQHSSNSKSQEKAAVAELEDDQRLVASVVRAHLETCDFTSDKV 116
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
P L RARE P YT C TLACPLNP+ P+ GQQELL DFS+RFSP IR VVEFAKRIP
Sbjct: 117 APTLARAREQPNYTLCHPTLACPLNPSPRPVTGQQELLNDFSKRFSPAIRGVVEFAKRIP 176
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DDQVTLLKAGVFEVLLVRLACMFDS+ NSM+ LNG+VL R+S+ + SNARFL
Sbjct: 177 GFGLLAQDDQVTLLKAGVFEVLLVRLACMFDSECNSMVTLNGQVLRRESVCAYSNARFLT 236
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMF+FAERLN + L+D+EIGLF++++VI+ R GLRN E +ERM +L+ L VL QN
Sbjct: 237 DSMFEFAERLNAMRLNDSEIGLFNAVIVIAADRPGLRNVEFIERMHKQLKCALQSVLMQN 296
Query: 263 HPEQMNLCAELISMLPDLRTLNQ 285
HP++ +LC EL+ +PDLRTL +
Sbjct: 297 HPDRPSLCQELLKKIPDLRTLTR 319
>gi|195128283|ref|XP_002008593.1| GI13580 [Drosophila mojavensis]
gi|193920202|gb|EDW19069.1| GI13580 [Drosophila mojavensis]
Length = 1429
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 208/392 (53%), Positives = 275/392 (70%), Gaps = 37/392 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 511 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 570
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 571 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 624
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 625 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 684
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++QN
Sbjct: 685 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQCIVSQN 744
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQW---HGEDNSKSP 319
P+Q + A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W G+ SKSP
Sbjct: 745 RPDQPDFLAKLLDTMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEEGDGASKSP 801
Query: 320 TGSSWSDVTMEEVKSPLGSVSSTESV----------------------CSNEVATLNEYT 357
G SW + +E KSPLGSVSSTES S+ A+ +
Sbjct: 802 AG-SWDAMDVEAAKSPLGSVSSTESADLDYGTPSSTQLQQPQQQSTPTQSSSSASSASSS 860
Query: 358 STHAQNAPLLAATLAGAQCPHRNRANSGSTTD 389
S+ A +APLLAATL+G CP RNRANSGS+ D
Sbjct: 861 SSLASSAPLLAATLSGG-CPLRNRANSGSSGD 891
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 80/152 (52%), Gaps = 47/152 (30%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSV---------------CS-------- 424
T G R+RKLDSPTDSGIESG EK E A + CS
Sbjct: 955 TSGATRYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAQAVAA 1014
Query: 425 ---------------SPR-SSFEEKDFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHK 467
SP+ SS VEDMPVLKR+LQAPPL DT+SLMDEAYKPHK
Sbjct: 1015 AASVGVGVVSVSPVRSPQPSSSANLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHK 1074
Query: 468 KFRALRQK--DSAEAEPLHPSLASSHSMLAKS 497
KFRALR + +SAEA+ +SS SM A S
Sbjct: 1075 KFRALRHREFESAEADA-----SSSTSMPAHS 1101
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 483 LHPSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
L S+AS+HS+LAKSLM PRMTP+Q+KR++I+ NY+MR
Sbjct: 1163 LGSSMASTHSVLAKSLMAEPRMTPEQMKRSDIIQNYLMR 1201
>gi|158300377|ref|XP_320316.4| AGAP012223-PA [Anopheles gambiae str. PEST]
gi|157013130|gb|EAA00107.5| AGAP012223-PA [Anopheles gambiae str. PEST]
Length = 934
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/324 (53%), Positives = 235/324 (72%), Gaps = 23/324 (7%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA+ELDD+ R+L++V++AH++TC FT +K+
Sbjct: 157 VRFGRVPKREKARILAAMQQSTQNRGNQRALASELDDQPRLLASVLQAHIETCEFTREKV 216
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ TLACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 217 AAMRQRARDCPSYSM--PTLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 269
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFD+ NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 270 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDTSINSIICLNGQVMRRDTIQNGANARFLV 329
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N + L+D EIGLF +IV+I+P R GLRN EL+ERM KL+ L V++QN
Sbjct: 330 DSTFNFAERMNSMQLTDAEIGLFCAIVLITPDRPGLRNVELIERMYTKLKACLQSVISQN 389
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED------NS 316
P++ EL+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+ ++
Sbjct: 390 RPDKPEFMQELLRTMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSAEEDQGAVLDA 446
Query: 317 KSPTGSSWS----DVTMEEVKSPL 336
KSP +SWS V +E KSP+
Sbjct: 447 KSP--ASWSCDGNQVEVEIAKSPM 468
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 61/94 (64%), Gaps = 14/94 (14%)
Query: 393 RFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFN----------HVEDMP 442
R+RKLDSPTDSGIESG EK H + P S P N V++MP
Sbjct: 599 RYRKLDSPTDSGIESGNEK---HDNPPRSSLEDPALEDSSSSSNGKAPSLARHASVDNMP 655
Query: 443 VLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQK 475
VLKR+LQAPPL DT+SLMDEAYKPHKKFRA+R +
Sbjct: 656 VLKRVLQAPPLYDTNSLMDEAYKPHKKFRAMRHR 689
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 36/38 (94%)
Query: 484 HPSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMR 521
+ SL+S+HS+LAKSLME PRMTP+Q+KRT+I+HNYIMR
Sbjct: 747 YSSLSSTHSVLAKSLMEEPRMTPEQMKRTDIIHNYIMR 784
>gi|7517|emb|CAA33611.1| unnamed protein product [Drosophila melanogaster]
Length = 1443
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 182/388 (46%), Positives = 243/388 (62%), Gaps = 35/388 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARI ++ + AHL+TC FT +K+
Sbjct: 525 VRFGRVPKREKARIWRPCNRAPRIAASSDPSPPSWMTSHASSPPCCCAHLETCEFTKEKV 584
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M R R P+ S L+ P LQ +QE FS+RF+ IR V++FA IP
Sbjct: 585 SAM-RHGRGLPSTPCHTSGLSAEPAPE---LQSEQE----FSQRFAHVIRGVIDFAGMIP 636
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 637 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 696
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 697 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 756
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 757 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 813
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 814 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 872
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 873 SSAPLLAATLSGG-CPLRNRANSGSSGD 899
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 103/232 (44%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKD--------FNH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 969 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 1028
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 1029 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1088
Query: 467 KKFRALRQK--DSAEAEP------------------------------------------ 482
KKFRALR + ++AEA+
Sbjct: 1089 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPVAASAAAGNPAQS 1148
Query: 483 -LHPSLASS---------HSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH L S HS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1149 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1200
>gi|389614467|dbj|BAM20281.1| nuclear hormone receptor E75A, partial [Papilio xuthus]
Length = 423
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 227/352 (64%), Gaps = 50/352 (14%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAEL+D R+L+ VVRAHLDTC FT D++
Sbjct: 113 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELEDAPRLLARVVRAHLDTCEFTRDRV 172
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP + LQ ++E FS+RF+ IR V++FA IP
Sbjct: 173 AAMRARARDCPTYSQ--PTLACPLNP-APELQSEKE----FSQRFAHVIRGVIDFAGLIP 225
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 226 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 285
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++ LRN +LVERM +L+ L V+ QN
Sbjct: 286 DSTFKFAERMNSMN---------------------LRNVDLVERMHARLKACLQTVVTQN 324
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+ G
Sbjct: 325 RPDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWGEEE------GC 375
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAG 373
SW+D EE +SP+ SVSS+ES PLLAATLAG
Sbjct: 376 SWADSGPEESARSPIASVSSSESG-----------EVGGECGTPLLAATLAG 416
>gi|260807677|ref|XP_002598635.1| hypothetical protein BRAFLDRAFT_67032 [Branchiostoma floridae]
gi|229283908|gb|EEN54647.1| hypothetical protein BRAFLDRAFT_67032 [Branchiostoma floridae]
Length = 566
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 188/284 (66%), Gaps = 13/284 (4%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTE-KALAAELDDEQRMLSTVVRAHLDTCAFTADK 82
VRFGRVPKREKAR+LA +Q N +E K ++E + + + +AH TC++T +K
Sbjct: 89 VRFGRVPKREKARLLAELQNLKNQTESELKVTSSEEAEVDEVAMVIAKAHHQTCSYTREK 148
Query: 83 ------IEPMLRRAREHPTYTACPSTLACPLNPNS-HPLQGQQELLQDFSERFSPTIRDV 135
I+P++ A+ P ++ CPLNP L+G ++ ++FSERF+P I++V
Sbjct: 149 LAAMKTIQPIV--AQNLPNLHM---SMVCPLNPFPIGALEGANKMWEEFSERFTPAIKEV 203
Query: 136 VEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS 195
VEFAKRIPGF L DQ+TLLKAG FEVLLVRL MFD +++ M +NG + R +
Sbjct: 204 VEFAKRIPGFQQLNQTDQITLLKAGCFEVLLVRLCPMFDCKSDMMTFVNGVRIQRSQLLQ 263
Query: 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENML 255
L++SMFDFAE+LN L+L + EI LF+++V+++ R G+++ E VER++ +L L
Sbjct: 264 MGCGELINSMFDFAEKLNVLNLMECEIALFTAVVLVAADRQGVKDVEAVERLQERLIRAL 323
Query: 256 MHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ +NHPE++ L A+L+ LPDLRTLN LHSEKL+AF+M Q
Sbjct: 324 RSMVAKNHPEELALFAKLLMKLPDLRTLNTLHSEKLLAFKMDAQ 367
>gi|443723214|gb|ELU11745.1| hypothetical protein CAPTEDRAFT_62897, partial [Capitella teleta]
Length = 347
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 173/271 (63%), Gaps = 5/271 (1%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+I+ MQ+ N + L + L++E ++ ++ +H C FT K
Sbjct: 80 VRFGRVPKREKAKIIEQMQK-VNAQSQVSVLNSLLENENDVIQKIMDSHFRLCDFTHSKF 138
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
+A P + CP+ ACPLNP Q +FS F+P IR+VV FAK IP
Sbjct: 139 VQFFEKAWAEPRFVDCPAHKACPLNPTPSE-QDSMSQWDEFSNCFTPAIRNVVYFAKCIP 197
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSN--ARFL 201
GFS+ +DQVTLLKAG FEVLLV LA +FDS+TN+M+ NG L + S H++N A FL
Sbjct: 198 GFSVFSQEDQVTLLKAGTFEVLLVHLAPLFDSRTNTMLFANG-TLYKRSAHTTNTNAGFL 256
Query: 202 MDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQ 261
+DSMFDFA+ LN L L D EIGLFS++V+I+ R GLR + V R++ + L ++
Sbjct: 257 LDSMFDFADHLNELKLKDEEIGLFSALVIIASDRLGLRYADQVARLQSTISKGLQKLVQI 316
Query: 262 NHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
NHP+ ++ + L+ +PDLRTLN LHSEKL+
Sbjct: 317 NHPDDPSIFSRLLMKIPDLRTLNTLHSEKLL 347
>gi|219944617|gb|ACL55050.1| E75 nuclear receptor [Neomysis integer]
Length = 208
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/185 (62%), Positives = 147/185 (79%), Gaps = 5/185 (2%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARI+AAMQ + + E A+ ++L++EQR+ S+++RAH++TC FT +K+
Sbjct: 25 VRFGRVPKREKARIIAAMQNHSQVR-QENAILSDLENEQRVTSSIIRAHMNTCEFTREKV 83
Query: 84 EPMLRRAREHPTYTACPS-TLACPLNPNSHPL--QGQQELLQDFSERFSPTIRDVVEFAK 140
M+++AR P Y+ CP TL CPLNP P QGQQE++QDF+ERFSP IR VV+FAK
Sbjct: 84 SSMMQQARNRPIYSHCPQLTLTCPLNPVPAPGNGQGQQEVIQDFNERFSPAIRGVVDFAK 143
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS-NAR 199
+PGF LL DDQVTLLKAGVFEVLLVRLA MFDS++N+ +CLNG +L RD++ SS NAR
Sbjct: 144 NLPGFHLLPQDDQVTLLKAGVFEVLLVRLASMFDSRSNTTLCLNGMLLKRDALQSSTNAR 203
Query: 200 FLMDS 204
FLMDS
Sbjct: 204 FLMDS 208
>gi|345971948|gb|ABU89807.2| nuclear receptor subfamily 1 group D variant 1 [Mytilus
galloprovincialis]
Length = 437
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 164/273 (60%), Gaps = 5/273 (1%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPK+E+ARI+ M + N + L L + ++ V+ AH T +
Sbjct: 95 VRFGRVPKKEEARIIEQMHR-VNCQTQVNQLHTLLQNPDDLIQAVILAHRQTNTIPPQNV 153
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPN--SHPLQGQQELLQDFSERFSPTIRDVVEFAKR 141
+ M A + + P+ +ACPLN P Q+ +DF + ++P I VV FAK
Sbjct: 154 QTMREAALCNNDFLNVPAHMACPLNAQLARDPNDNSQDW-EDFYDFYTPAIISVVNFAKS 212
Query: 142 IPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSN-ARF 200
+PGF +L DDQVTLLKA FEVLLVR AC+FD+ +M+ G++ R S+N A F
Sbjct: 213 VPGFCILNQDDQVTLLKAATFEVLLVRHACLFDTDNGTMMFTCGKLFKRPPPDSTNSAGF 272
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L+DSMFDFAER N L L++ EI LFS+IV++SP R GLRN E +E+++ KL L V+N
Sbjct: 273 LLDSMFDFAERFNMLKLAEEEIALFSAIVLLSPDRPGLRNVEQIEKLQNKLTESLQTVIN 332
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVA 293
NH E L A+L+ +LRTLN LHSEK +
Sbjct: 333 TNHKEDTTLFAKLLMKTTNLRTLNTLHSEKSIG 365
>gi|345971952|gb|ABU89808.2| nuclear receptor subfamily 1 group D variant 2 [Mytilus
galloprovincialis]
Length = 403
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 163/273 (59%), Gaps = 5/273 (1%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPK+E+ARI+ M + N + L L + ++ V+ AH T +
Sbjct: 95 VRFGRVPKKEEARIIEQMHR-VNCQTQVNQLHTLLQNPDDLIQAVILAHRQTNTIPPQNV 153
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPN--SHPLQGQQELLQDFSERFSPTIRDVVEFAKR 141
+ M A + + P+ +ACPLN P Q+ +DF + ++P I VV FAK
Sbjct: 154 QTMREAALCNNDFLNVPAHMACPLNAQLARDPNDNSQDW-EDFYDFYTPAIISVVNFAKS 212
Query: 142 IPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSN-ARF 200
+PGF +L DDQVTLLKA FEVLLVR AC+FD+ +M+ G++ R S+N A F
Sbjct: 213 VPGFCILNQDDQVTLLKAATFEVLLVRHACLFDTDNGTMMFTCGKLFKRSPPDSTNSAGF 272
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L+DSMFDFAER N L L++ EI LFS+IV++S R GLRN E +E+++ KL L V+N
Sbjct: 273 LLDSMFDFAERFNMLKLAEEEIALFSAIVLLSSDRPGLRNVEQIEKLQNKLTESLQTVIN 332
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVA 293
NH E L A+L+ DLRTLN LHSEK +
Sbjct: 333 TNHKEDTTLFAKLLMKTTDLRTLNTLHSEKSIG 365
>gi|405978364|gb|EKC42763.1| Nuclear hormone receptor E75 [Crassostrea gigas]
Length = 1095
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 127/191 (66%), Gaps = 1/191 (0%)
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
ACPLN N + D SE F+P I+ VV+FAK IPGF L DDQVTLLKA FE
Sbjct: 181 ACPLNGNVTQSSEDTQGWSDMSEFFTPAIKSVVDFAKAIPGFCFLSQDDQVTLLKAATFE 240
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRD-SIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
VLLVR+AC+FD ++N+M+ G + R+ S +S+A FL+DSMFDFA+R N L+L+D E+
Sbjct: 241 VLLVRMACLFDPESNTMMFTCGRMFKREVSQTTSSAGFLLDSMFDFADRFNKLNLTDEEV 300
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
+FS+IV++SP R GLRN E +E + KL L ++ NH E L A+L+ DLRT
Sbjct: 301 AIFSAIVLLSPDRPGLRNVEQLESFQMKLTECLQSMITANHKEDNTLFAKLLMKTTDLRT 360
Query: 283 LNQLHSEKLVA 293
LN LHSEK +
Sbjct: 361 LNTLHSEKSIG 371
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPK+EKARI+ MQ++T T + + + + ++ +V AH TC FT +
Sbjct: 11 VRFGRVPKKEKARIIEQMQKNTMHSQTSQMMTM-FQNSRDLIQAIVTAHHHTCVFTHGNV 69
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M A ++ + CP+ +ACPLN N + D SE F+P I+ VV+FAK IP
Sbjct: 70 RQMREDAIKNNNFVNCPAQMACPLNGNVTQSSEDTQGWSDMSEFFTPAIKSVVDFAKAIP 129
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRD 191
GF L DDQVTLLKA FEVLLVR+AC+FD ++N+M+ G + R+
Sbjct: 130 GFCFLSQDDQVTLLKAATFEVLLVRMACLFDPESNTMMFTCGRMFKRE 177
>gi|241106442|ref|XP_002410049.1| nuclear receptor, putative [Ixodes scapularis]
gi|215492869|gb|EEC02510.1| nuclear receptor, putative [Ixodes scapularis]
Length = 498
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 200/393 (50%), Gaps = 73/393 (18%)
Query: 205 MFDFAERLN--GLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
+FD R + + ++GLF S+VVI+P R GLRN +LV++M+ +L +L +
Sbjct: 149 LFDTVVRAHEETCDFTSDKLGLFCSVVVIAPDRPGLRNTDLVQKMQRRLTEVLQKAVAAG 208
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HP++ LCAEL+ +PDLRTLN LHSEKL+A++M + + P
Sbjct: 209 HPDRPQLCAELLKKVPDLRTLNTLHSEKLLAYKM-----------------EPATPPYLD 251
Query: 323 SWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNRA 382
W SP SST S L GA+ P R+ +
Sbjct: 252 HWGLAEDWSPASPRSVASSTNS--------------------------LDGAKSPVRSGS 285
Query: 383 NSGSTTDGD-------RRFRKLDSPTDSGIESGTEKIEKHASAPT-SVCSSPRSSFEEK- 433
S ST + R+LDSPTDSGI+SG E PT SVCSSPR S +EK
Sbjct: 286 FSSSTDYSPDSPAKPFAKVRRLDSPTDSGIDSGK---EPSCCTPTASVCSSPR-SLDEKV 341
Query: 434 ----DFNHVEDMPVLKRILQAPPLDT-SSLMDEAYKPHKKFRALRQKDSAEAEPLHPSLA 488
+ EDMPVLKR LQAPPL + + LM+EAY+ HKK RA+R+ EA LA
Sbjct: 342 KEVAEEAADEDMPVLKRALQAPPLVSPNQLMEEAYRHHKKLRAVRK----EAASSSADLA 397
Query: 489 SSHSMLAKSLMEGPR-MTPDQLKRTEIVHNYIMRTDSP----PSAYFPRSWHSSSVIKPA 543
SSHS L L + PR + QLKRT+++HN IMR + P P Y P +W +S +
Sbjct: 398 SSHSTLVGRLQQAPRFLNEQQLKRTDLIHNIIMRNEGPAPKFPPFYPPLTWVDASPPR-C 456
Query: 544 PPATVTSNALLELQVAATSQPLNLSKKTPPPSP 576
P + A L ++ QPLNLSKK PSP
Sbjct: 457 PYSPPGPGASPPLVLSDGQQPLNLSKKPASPSP 489
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ+ N EKALA EL+DE R+ TVVRAH +TC FT+DK+
Sbjct: 110 VRFGRVPKREKAKILAAMQK-VNASSQEKALAVELEDEMRLFDTVVRAHEETCDFTSDKL 168
>gi|389614741|dbj|BAM20394.1| nuclear hormone receptor E75B, partial [Papilio polytes]
Length = 235
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 157/259 (60%), Gaps = 47/259 (18%)
Query: 172 MFDSQTNSMICLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
MFD+ NS+ICLNG+++ RDSI S +NARFL+DS F FAER+N ++L+D EIGLF +IV+
Sbjct: 1 MFDAPLNSIICLNGQLMKRDSIQSGANARFLVDSTFKFAERMNSMNLTDAEIGLFCAIVL 60
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEK 290
I+P R GLRN +LVERM +L+ L V+ QN P++ EL+ LPDLRTL+ LH+EK
Sbjct: 61 ITPDRPGLRNVDLVERMHARLKACLQTVVTQNRPDRPGFLRELMDTLPDLRTLSTLHTEK 120
Query: 291 LVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGSSWSDVTMEE-VKSPLGSVSSTESVCSNE 349
LV F+ TE ++ L +QQ W E+ G SW+D EE +SP+GSVSS+ES
Sbjct: 121 LVVFR-TEHKELL--RQQMWGEEE------GCSWADSGPEESARSPIGSVSSSES----- 166
Query: 350 VATLNEYTSTHAQNAPLLAATLAGAQCPHRNRANSGSTTDGDR----------------- 392
PLLAATLAG R R +S S+ D +
Sbjct: 167 ------GEVGGDCGTPLLAATLAG-----RRRLDSRSSVDEEALGVAHLAHNGLTVTPVR 215
Query: 393 ---RFRKLDSPTDSGIESG 408
R+RKL SPTDSGIESG
Sbjct: 216 PPPRYRKLXSPTDSGIESG 234
>gi|443682250|gb|AGC97431.1| ecdysone-induced protein 75-like protein, partial [Monochamus
alternatus]
Length = 134
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKRE+ARILAAMQQS+N++ EKA+ AEL+DEQR+L+TVVRAH+DTC FT DK+
Sbjct: 28 VRFGRVPKREEARILAAMQQSSNSRTLEKAVTAELEDEQRLLATVVRAHIDTCDFTRDKV 87
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
EPML+RAR+HP+YTACP TLACPLNPN PL GQQELLQDFS+R SP
Sbjct: 88 EPMLQRARDHPSYTACPPTLACPLNPNPQPLAGQQELLQDFSKRSSP 134
>gi|687735|gb|AAA62508.1| Rev-ErbA-beta, partial [Rattus norvegicus]
Length = 533
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 336 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 395
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LNGL LSD
Sbjct: 396 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNGLQLSDE 455
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 456 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 515
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 516 RSLNNMHSEELLAFKV 531
>gi|350590999|ref|XP_003358388.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Sus
scrofa]
Length = 804
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 607 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 666
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 667 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 726
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 727 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 786
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 787 RSLNNMHSEELLAFKV 802
>gi|6166582|sp|Q63504.1|NR1D2_RAT RecName: Full=Nuclear receptor subfamily 1 group D member 2;
AltName: Full=EAR4; AltName: Full=Rev-erb-beta
gi|695707|emb|CAA58021.1| Rev-erb-Beta1 [Rattus norvegicus]
gi|149040000|gb|EDL94084.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a
[Rattus norvegicus]
gi|149040001|gb|EDL94085.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 578
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 381 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 440
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LNGL LSD
Sbjct: 441 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNGLQLSDE 500
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 501 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 560
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 561 RSLNNMHSEELLAFKV 576
>gi|449492745|ref|XP_002194827.2| PREDICTED: nuclear receptor subfamily 1 group D member 2
[Taeniopygia guttata]
Length = 477
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ H P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 280 LVCPMSKTPHVDPNKSGHEIWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 339
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 340 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 399
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 400 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 459
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 460 RSLNNMHSEELLAFKV 475
>gi|345323708|ref|XP_001509051.2| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Ornithorhynchus anatinus]
Length = 699
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 502 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 561
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 562 TFEVLMVRFASLFDAKERTVTFLSGKKFSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 621
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 622 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 681
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 682 RSLNNMHSEELLAFKV 697
>gi|440905289|gb|ELR55685.1| Nuclear receptor subfamily 1 group D member 2, partial [Bos
grunniens mutus]
Length = 578
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 381 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 440
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 441 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 500
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 501 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 560
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 561 RSLNNMHSEELLAFKV 576
>gi|194373413|dbj|BAG56802.1| unnamed protein product [Homo sapiens]
Length = 385
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 188 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 247
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 248 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 307
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 308 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 367
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 368 RSLNNMHSEELLAFKV 383
>gi|417411933|gb|JAA52385.1| Putative nuclear receptor subfamily protein 1 group d member 2
isoform 1, partial [Desmodus rotundus]
Length = 612
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 415 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 475 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 535 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 595 RSLNNMHSEELLAFKV 610
>gi|45383934|ref|NP_990536.1| nuclear receptor subfamily 1 group D member 2 [Gallus gallus]
gi|1429379|emb|CAA56551.1| REV-ERBb [Gallus gallus]
Length = 549
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ H P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 352 LVCPMSKTPHVDPNKSGHEVWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 411
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 412 TFEVLMVRFASLFDARERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 471
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 472 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 531
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 532 RSLNNMHSEELLAFKV 547
>gi|119918335|ref|XP_610586.3| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Bos
taurus]
Length = 585
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 388 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 447
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 448 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 507
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 508 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 567
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 568 RSLNNMHSEELLAFKV 583
>gi|449273802|gb|EMC83188.1| Nuclear receptor subfamily 1 group D member 2, partial [Columba
livia]
Length = 576
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ H P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKTPHVDPNKSGHEVWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
>gi|432115889|gb|ELK37034.1| Nuclear receptor subfamily 1 group D member 2 [Myotis davidii]
Length = 501
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 304 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 363
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 364 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 423
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 424 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLITKNHPNEASIFTKLLLKLPDL 483
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 484 RSLNNMHSEELLAFKV 499
>gi|215274122|sp|Q14995.3|NR1D2_HUMAN RecName: Full=Nuclear receptor subfamily 1 group D member 2;
AltName: Full=Orphan nuclear hormone receptor BD73;
AltName: Full=Rev-erb-beta; AltName: Full=V-erbA-related
protein 1-related; Short=EAR-1R
Length = 579
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CPL+ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPLSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|410971527|ref|XP_003992219.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Felis
catus]
Length = 501
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 304 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 363
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 364 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 423
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 424 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 483
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 484 RSLNNMHSEELLAFKV 499
>gi|354472063|ref|XP_003498260.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2-like [Cricetulus griseus]
Length = 634
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 437 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 496
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 497 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 556
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 557 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 616
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 617 RSLNNMHSEELLAFKV 632
>gi|397511708|ref|XP_003826209.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Pan
paniscus]
Length = 504
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 367 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 427 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKV 502
>gi|291399718|ref|XP_002716247.1| PREDICTED: nuclear receptor subfamily 1, group D, member 2
[Oryctolagus cuniculus]
Length = 606
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 409 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 468
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 469 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 528
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 529 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 588
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 589 RSLNNMHSEELLAFKV 604
>gi|338715053|ref|XP_001492528.3| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Equus
caballus]
Length = 503
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 306 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 365
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 366 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 425
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 426 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 485
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 486 RSLNNMHSEELLAFKV 501
>gi|426256622|ref|XP_004021937.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2 [Ovis aries]
Length = 588
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 391 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 450
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 451 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 510
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 511 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 570
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 571 RSLNNMHSEELLAFKV 586
>gi|332215364|ref|XP_003256813.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Nomascus
leucogenys]
Length = 504
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 367 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 427 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKV 502
>gi|224177493|ref|NP_001138897.1| nuclear receptor subfamily 1 group D member 2 isoform 2 [Homo
sapiens]
gi|426339690|ref|XP_004033776.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Gorilla gorilla gorilla]
gi|119584745|gb|EAW64341.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_b
[Homo sapiens]
gi|194377964|dbj|BAG63345.1| unnamed protein product [Homo sapiens]
gi|325495473|gb|ADZ17342.1| nuclear receptor Rev-ErbA beta variant 2 [Homo sapiens]
Length = 504
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 367 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 427 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKV 502
>gi|402861701|ref|XP_003895223.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Papio anubis]
Length = 504
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 367 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 427 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKV 502
>gi|148688702|gb|EDL20649.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_a [Mus
musculus]
Length = 599
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 402 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 461
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 462 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 521
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 522 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 581
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 582 RSLNNMHSEELLAFKV 597
>gi|297491334|ref|XP_002698802.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Bos
taurus]
gi|296472291|tpg|DAA14406.1| TPA: nuclear receptor subfamily 1, group D, member 2 [Bos taurus]
Length = 585
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 388 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 447
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 448 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 507
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 508 EMSLFTAVVLLSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 567
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 568 RSLNNMHSEELLAFKV 583
>gi|301791796|ref|XP_002930866.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2-like [Ailuropoda melanoleuca]
Length = 576
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
>gi|73989968|ref|XP_542763.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Canis lupus familiaris]
Length = 576
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
>gi|332816245|ref|XP_003309702.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Pan troglodytes]
Length = 504
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 367 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 427 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKV 502
>gi|395734078|ref|XP_002814054.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Pongo
abelii]
Length = 504
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 367 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 427 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKV 502
>gi|431919409|gb|ELK17928.1| Nuclear receptor subfamily 1 group D member 2 [Pteropus alecto]
Length = 591
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 394 LVCPMSMSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 453
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 454 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 513
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 514 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 573
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 574 RSLNNMHSEELLAFKV 589
>gi|395816616|ref|XP_003781794.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Otolemur garnettii]
Length = 502
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 305 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 364
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 365 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 424
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 425 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 484
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 485 RSLNNMHSEELLAFKV 500
>gi|403290000|ref|XP_003936122.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Saimiri
boliviensis boliviensis]
Length = 586
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 389 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 448
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 449 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 508
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 509 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 568
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 569 RSLNNMHSEELLAFKV 584
>gi|296228212|ref|XP_002759745.1| PREDICTED: nuclear receptor subfamily 1 group D member 2
[Callithrix jacchus]
Length = 584
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 387 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 446
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 447 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 506
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 507 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 566
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 567 RSLNNMHSEELLAFKV 582
>gi|28279409|gb|AAH45613.1| Nuclear receptor subfamily 1, group D, member 2 [Homo sapiens]
Length = 579
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|281348874|gb|EFB24458.1| hypothetical protein PANDA_021476 [Ailuropoda melanoleuca]
Length = 571
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 374 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 433
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 434 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 493
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 494 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 553
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 554 RSLNNMHSEELLAFKV 569
>gi|60829127|gb|AAX36866.1| nuclear receptor subfamily 1 group D member 2 [synthetic construct]
gi|61368627|gb|AAX43212.1| nuclear receptor subfamily 1 group D member 2 [synthetic construct]
Length = 580
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|224177491|ref|NP_005117.3| nuclear receptor subfamily 1 group D member 2 isoform 1 [Homo
sapiens]
gi|2116672|dbj|BAA20088.1| EAR-1r [Homo sapiens]
gi|168278146|dbj|BAG11051.1| orphan nuclear receptor NR1D2 [synthetic construct]
gi|189066703|dbj|BAG36250.1| unnamed protein product [Homo sapiens]
gi|325495471|gb|ADZ17341.1| nuclear receptor Rev-ErbA beta variant 1 [Homo sapiens]
Length = 579
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|114585699|ref|XP_516330.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 2
[Pan troglodytes]
gi|410213864|gb|JAA04151.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
gi|410255500|gb|JAA15717.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
gi|410293036|gb|JAA25118.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
gi|410355045|gb|JAA44126.1| nuclear receptor subfamily 1, group D, member 2 [Pan troglodytes]
Length = 579
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|48146985|emb|CAG33715.1| NR1D2 [Homo sapiens]
Length = 579
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|216409694|dbj|BAH02284.1| nuclear receptor subfamily 1, group D, member 2 [Homo sapiens]
Length = 579
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|426339688|ref|XP_004033775.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Gorilla gorilla gorilla]
Length = 579
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|348535606|ref|XP_003455290.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oreochromis niloticus]
Length = 627
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N + H P + E+ ++FS F+P +R+VVEFAK+IPGF L DQV+LLKAG
Sbjct: 430 LVCPMNTSPHVDPQKSGHEVWEEFSHSFTPAVREVVEFAKKIPGFRELSQHDQVSLLKAG 489
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD + ++ L G+ DS+ + A L++SMFDF+E+L L LS+
Sbjct: 490 TFEVLVVRFASLFDVKDRTVTFLGGKRYSVDSLRALGAGDLLNSMFDFSEKLMNLGLSEE 549
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 550 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRSLITKNHPNEASIFTKLLLKLPDL 609
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 610 RSLNNMHSEQLLAFKV 625
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 10 KSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRM 64
K +L G +R VRFGR+PKREK R+L MQ + N L ++L Q +
Sbjct: 185 KCLLVGMSR---DSVRFGRIPKREKQRMLLEMQSAMNNMMNNSQLQSQLYSSQSL 236
>gi|348588919|ref|XP_003480212.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Cavia porcellus]
Length = 580
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 383 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 442
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 443 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 502
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 503 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 562
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 563 RSLNNMHSEELLAFKV 578
>gi|380788235|gb|AFE65993.1| nuclear receptor subfamily 1 group D member 2 isoform 1 [Macaca
mulatta]
gi|383409825|gb|AFH28126.1| nuclear receptor subfamily 1 group D member 2 isoform 1 [Macaca
mulatta]
Length = 579
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|395816614|ref|XP_003781793.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Otolemur garnettii]
Length = 577
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 380 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 439
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 440 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 499
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 500 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 559
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 560 RSLNNMHSEELLAFKV 575
>gi|26347753|dbj|BAC37525.1| unnamed protein product [Mus musculus]
Length = 576
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
>gi|402861699|ref|XP_003895222.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 isoform 1
[Papio anubis]
Length = 579
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
>gi|254553267|ref|NP_035714.3| nuclear receptor subfamily 1 group D member 2 [Mus musculus]
gi|6166581|sp|Q60674.1|NR1D2_MOUSE RecName: Full=Nuclear receptor subfamily 1 group D member 2;
AltName: Full=Orphan nuclear receptor RVR; AltName:
Full=Rev-erb-beta
gi|537290|gb|AAA79513.1| RVR [Mus musculus]
gi|66396497|gb|AAH96461.1| Nuclear receptor subfamily 1, group D, member 2 [Mus musculus]
gi|148688703|gb|EDL20650.1| nuclear receptor subfamily 1, group D, member 2, isoform CRA_b [Mus
musculus]
Length = 576
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
>gi|507211|gb|AAC52144.1| Rev-Erb-beta, partial [Mus musculus]
Length = 542
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 345 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 404
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 405 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 464
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 465 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 524
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 525 RSLNNMHSEELLAFKV 540
>gi|355560069|gb|EHH16797.1| hypothetical protein EGK_12145, partial [Macaca mulatta]
gi|355747100|gb|EHH51714.1| hypothetical protein EGM_11146, partial [Macaca fascicularis]
Length = 574
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 377 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 436
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 437 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 496
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 497 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 556
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 557 RSLNNMHSEELLAFKV 572
>gi|349605485|gb|AEQ00704.1| Nuclear receptor subfamily 1 group D member 2-like protein, partial
[Equus caballus]
Length = 283
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 86 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 145
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 146 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 205
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 206 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 265
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 266 RSLNNMHSEELLAFKV 281
>gi|355707867|gb|AES03089.1| nuclear receptor subfamily 1, group D, member 2 [Mustela putorius
furo]
Length = 294
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 97 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 156
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 157 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 216
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 217 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 276
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 277 RSLNNMHSEELLAFKV 292
>gi|62087762|dbj|BAD92328.1| orphan nuclear receptor NR1D2 variant [Homo sapiens]
Length = 549
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
+ CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 352 VVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 411
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 412 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 471
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 472 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 531
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 532 RSLNNMHSEELLAFKV 547
>gi|126341712|ref|XP_001380756.1| PREDICTED: nuclear receptor subfamily 1 group D member 2
[Monodelphis domestica]
Length = 575
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 378 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 437
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D + S A L++SMF+F+E+LN L LSD
Sbjct: 438 TFEVLMVRFASLFDAKERTVTFLSGKKYNMDDLRSMGAGELLNSMFEFSEKLNSLQLSDE 497
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 498 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 557
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 558 RSLNNMHSEELLAFKV 573
>gi|14994043|gb|AAK76396.1| Rev-Erb beta 2 [Danio rerio]
Length = 592
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 129/196 (65%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N P P + + ++FS F+P +R+VVEFAKRIPGF L DQV+LLKAG
Sbjct: 395 LVCPMNTSPYVDPQKSGHSIWEEFSMSFTPAVREVVEFAKRIPGFKDLSQHDQVSLLKAG 454
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR +FD + + L+G D++ S A L++SMFDF E+L L+LS+
Sbjct: 455 TFEVLVVRFTSLFDVKERKVTFLSGRKYSVDALRSLGAGDLLNSMFDFTEKLQALNLSEE 514
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSGL N VE ++ L L ++ +NHP ++ + +L+ LPDL
Sbjct: 515 EMSLFTAVVLVSADRSGLENVNSVEALQETLIRALRSLITKNHPNEIAIFTKLLLKLPDL 574
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 575 RSLNNMHSEQLLAFKV 590
>gi|395540267|ref|XP_003772078.1| PREDICTED: nuclear receptor subfamily 1 group D member 2, partial
[Sarcophilus harrisii]
Length = 456
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 259 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 318
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D + S A L++SMF+F+E+LN L LSD
Sbjct: 319 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLRSMGAGELLNSMFEFSEKLNSLQLSDE 378
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 379 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 438
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 439 RSLNNMHSEELLAFKV 454
>gi|50233771|ref|NP_571140.1| nuclear receptor subfamily 1 group D member 2 [Danio rerio]
gi|49257184|gb|AAH74065.1| Nuclear receptor subfamily 1, group D, member 2b [Danio rerio]
gi|182890554|gb|AAI64697.1| Nr1d2b protein [Danio rerio]
Length = 578
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 129/196 (65%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N P P + + ++FS F+P +R+VVEFAKRIPGF L DQV+LLKAG
Sbjct: 381 LVCPMNTSPYVDPQKSGHSIWEEFSMSFTPAVREVVEFAKRIPGFKDLSQHDQVSLLKAG 440
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR +FD + + L+G D++ S A L++SMFDF E+L L+LS+
Sbjct: 441 TFEVLVVRFTSLFDVKERKVTFLSGRKYSVDALRSLGAGDLLNSMFDFTEKLQALNLSEE 500
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSGL N VE ++ L L ++ +NHP ++ + +L+ LPDL
Sbjct: 501 EMSLFTAVVLVSADRSGLENVNSVEALQETLIRALRSLITKNHPNEIAIFTKLLLKLPDL 560
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 561 RSLNNMHSEQLLAFKV 576
>gi|195927483|pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 129/196 (65%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP + P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 2 LVCPXSKSPYVDPHKSGHEIWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 61
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL VR A +FD++ ++ L+G+ D +HS A L++S F+F+E+LN L LSD
Sbjct: 62 TFEVLXVRFASLFDAKERTVTFLSGKKYSVDDLHSXGAGDLLNSXFEFSEKLNALQLSDE 121
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 122 EXSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIXKNHPNEASIFTKLLLKLPDL 181
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN HSE+L+AF++
Sbjct: 182 RSLNNXHSEELLAFKV 197
>gi|22219446|ref|NP_671743.1| nuclear receptor subfamily 1 group D member 2 [Rattus norvegicus]
gi|758418|gb|AAA64750.1| orphan nuclear receptor HZF-2 [Rattus norvegicus]
Length = 494
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 134/201 (66%), Gaps = 11/201 (5%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAK IPGF L DQV LLKAG
Sbjct: 296 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKCIPGFRDLSQHDQVNLLKAG 355
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LNGL LSD
Sbjct: 356 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNGLQLSDE 415
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERM-----RGKLENMLMHVLNQNHPEQMNLCAELIS 275
E+ LF+++V++S RSG+ N VE + RG+ ++M +NHP + ++ +L+
Sbjct: 416 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRGRGRTLIM----KNHPNEASIFTKLLL 471
Query: 276 MLPDLRTLNQLHSEKLVAFQM 296
LPDLR+LN +HSE+L+AF++
Sbjct: 472 KLPDLRSLNNMHSEELLAFKV 492
>gi|471081|gb|AAA65937.1| orphan nuclear hormone receptor BD73, partial [Homo sapiens]
Length = 579
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 3/197 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 381 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 440
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 441 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 500
Query: 221 EIGLFSSIVVISPSRSGLR-NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
E+ LF+++V++S RSG R N VE ++ L L ++ +NHP + ++ +L+ LPD
Sbjct: 501 EMSLFTAVVLVSADRSGNRKNVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPD 560
Query: 280 LRTLNQLHSEKLVAFQM 296
LR+LN +HSE+L+AF++
Sbjct: 561 LRSLNNMHSEELLAFKV 577
>gi|51556245|ref|NP_991292.1| nuclear receptor subfamily 1 group D member 1 [Danio rerio]
gi|37362256|gb|AAQ91256.1| nuclear receptor subfamily 1, group D, member 1 [Danio rerio]
Length = 637
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N P S P + QE+ +DFS F+P +R+VVEFAK IPGFS L +DQVTLLKAG
Sbjct: 440 LACPMNMHPYSDPNKTPQEIWEDFSLSFTPAVREVVEFAKHIPGFSTLSQNDQVTLLKAG 499
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR + +F+ + ++ ++G +++ S L+ +MFDF+E+LN L LS
Sbjct: 500 TFEVLMVRFSSLFNVKEKTVTFISGATYSLEALKSMGMGDLLGTMFDFSEKLNSLELSAE 559
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE ++ L L +++++ P + +L+ LPDL
Sbjct: 560 ELGLFTAVVLVSADRSGIENVNSVEMLQESLIRALRTLVSKSAPTDASRFTKLLLKLPDL 619
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 620 RTLNNMHSEKLLSFRI 635
>gi|159795549|pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
gi|159795550|pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
gi|159795551|pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
gi|159795552|pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 128/189 (67%)
Query: 108 NPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLV 167
+P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG FEVL+V
Sbjct: 4 SPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMV 63
Query: 168 RLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSS 227
R A +FD++ ++ L + D +HS A L++SMF+F+E+LN L LSD E+ LF++
Sbjct: 64 RFASLFDAKERTVTFLGSKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTA 123
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLH 287
+V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDLR+LN +H
Sbjct: 124 VVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMH 183
Query: 288 SEKLVAFQM 296
SE+L+AF++
Sbjct: 184 SEELLAFKV 192
>gi|410911348|ref|XP_003969152.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Takifugu rubripes]
Length = 573
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N +++ P + E+ ++FS F+P +R+VVEFAK+IPGF L DQV+LLKAG
Sbjct: 376 LVCPMNMSAYVDPQKSGHEVWEEFSHSFTPAVREVVEFAKKIPGFRDLSQHDQVSLLKAG 435
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD + ++ L G+ +++ + A L++SMFDF+E+L L LS+
Sbjct: 436 TFEVLVVRFASLFDVKNRTVTFLGGKKYSLEALRAMGAGDLLNSMFDFSEKLMNLGLSEE 495
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + + +L+ LPDL
Sbjct: 496 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRSLITKNHPNESAIFTKLLLKLPDL 555
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 556 RSLNNMHSEQLLAFKV 571
>gi|159795562|pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
gi|159795563|pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 126/189 (66%)
Query: 108 NPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLV 167
+P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG FEVL V
Sbjct: 4 SPYVDPHKSGHEIWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXV 63
Query: 168 RLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSS 227
R A +FD++ ++ L+G+ D +HS A L++S F+F+E+LN L LSD E LF++
Sbjct: 64 RFASLFDAKERTVTFLSGKKYSVDDLHSXGAGDLLNSXFEFSEKLNALQLSDEEXSLFTA 123
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLH 287
+V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDLR+LN H
Sbjct: 124 VVLVSADRSGIENVNSVEALQETLIRALRTLIXKNHPNEASIFTKLLLKLPDLRSLNNXH 183
Query: 288 SEKLVAFQM 296
SE+L+AF++
Sbjct: 184 SEELLAFKV 192
>gi|432957376|ref|XP_004085823.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like,
partial [Oryzias latipes]
Length = 528
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 137/217 (63%), Gaps = 13/217 (5%)
Query: 93 HPTYTACPST-----------LACPLNPNSHPL--QGQQELLQDFSERFSPTIRDVVEFA 139
PTYT P L CP+N + H + E+ ++FS F+P +R+VVEFA
Sbjct: 310 QPTYTCAPGVQQEWSSGNRMYLVCPMNISPHVSLHKTGNEVWEEFSHCFTPAVREVVEFA 369
Query: 140 KRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNAR 199
K+IPGF L DQV+LLKAG FEVL+VR A +F+ + ++ L G+ +++ + +
Sbjct: 370 KKIPGFRDLSQHDQVSLLKAGTFEVLVVRFASLFNVKDRTVTFLGGKKYRVETLKAMGSG 429
Query: 200 FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVL 259
+L++SMFDF+E+L L LS+ E+ LF+++V++S RSGL N VE ++ L L ++
Sbjct: 430 YLLNSMFDFSEKLMNLGLSEEEMSLFTAVVLVSADRSGLENVNSVEALQETLIRALRSLI 489
Query: 260 NQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+NHP + + +L+ LPDLR+LN +HSE+L+AF++
Sbjct: 490 TRNHPNESAIFTKLLLKLPDLRSLNNVHSEQLLAFKV 526
>gi|295414060|gb|ADG08189.1| nuclear receptor subfamily 1 group D member 1 [Potorous
tridactylus]
Length = 621
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 92 EHPTYTACPST-------LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRI 142
E T T CP LACP+N H G+ QE+ +DFS F+P +R+VVEFAK I
Sbjct: 405 EAETSTGCPWQDRSKNILLACPMNMYPHGRSGRSVQEIWEDFSMSFTPAVREVVEFAKHI 464
Query: 143 PGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLM 202
PGF L DQVTLLKAG FEVL+VR A +F+ + +++ L+ + + L+
Sbjct: 465 PGFCDLSQHDQVTLLKAGTFEVLMVRFASLFNVKEQTVMFLSRTTYSLQELGAMGMGDLL 524
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
++MFDF+E+LN L L++ E+GLF+++V++S RSG+ N VE+++ L L ++ +N
Sbjct: 525 NAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKN 584
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
P + + +L+ LPDLRTLN +HSEKL++F++ Q
Sbjct: 585 RPSETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDGQ 621
>gi|195552859|ref|XP_002076555.1| GD17564 [Drosophila simulans]
gi|194202166|gb|EDX15742.1| GD17564 [Drosophila simulans]
Length = 326
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 150/263 (57%), Gaps = 63/263 (23%)
Query: 212 LNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCA 271
+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN P+Q A
Sbjct: 1 MNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQNRPDQPEFLA 60
Query: 272 ELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN-------SKSPTGSSW 324
+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED +KSP+G SW
Sbjct: 61 KLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQNKSPSG-SW 116
Query: 325 SD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHAQNAPLLAAT 370
+D + +E KSPLGSVSS+ES S++ ++ + S A +APLLAAT
Sbjct: 117 ADAMDVEAAKSPLGSVSSSESADLDYGSPSSSQPQGVSLPSPPQQQPSALASSAPLLAAT 176
Query: 371 LAGAQCPHRNRANSGSTTDGD-------------------------------------RR 393
L+G CP RNRANSGS+ D R
Sbjct: 177 LSGG-CPLRNRANSGSSGDSGAAEMDIVGSHAHLTQNGLTITPIVRHQQQQQQQQQIAAR 235
Query: 394 FRKLDSPTDSGIESGTEKIEKHA 416
+RKLDSPTDSGIESG EK E A
Sbjct: 236 YRKLDSPTDSGIESGNEKNECKA 258
>gi|126308170|ref|XP_001370296.1| PREDICTED: nuclear receptor subfamily 1 group D member 1
[Monodelphis domestica]
Length = 622
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 424 LACPMNMYPHGRSGRSVQEIWEDFSMSFTPAVREVVEFAKHIPGFCDLSQHDQVTLLKAG 483
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 484 TFEVLMVRFASLFNVKEQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 543
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 544 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 603
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 604 RTLNNMHSEKLLSFRVDAQ 622
>gi|395826494|ref|XP_003786453.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Otolemur
garnettii]
Length = 613
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
>gi|514964|gb|AAA74939.1| Rev-erbA-alpha protein [Rattus norvegicus]
Length = 508
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK+IPGF L DQVTLLKAG
Sbjct: 310 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKQIPGFRDLSQHDQVTLLKAG 369
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 370 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 429
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S SG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 430 ELGLFTAVVLVSAEGSGMENSASVEQLQETLLGALRALVLKNRPSETSRFTKLLLKLPDL 489
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 490 RTLNNMHSEKLLSFRVDAQ 508
>gi|160332191|sp|Q63503.2|NR1D1_RAT RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|38303953|gb|AAH62047.1| Nr1d1 protein [Rattus norvegicus]
Length = 615
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQKTLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|444714014|gb|ELW54902.1| Nuclear receptor subfamily 1 group D member 1 [Tupaia chinensis]
Length = 612
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 414 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 473
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 474 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 533
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 534 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 593
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 594 RTLNNMHSEKLLSFRVDAQ 612
>gi|14290448|gb|AAH08989.1| Nuclear receptor subfamily 1, group D, member 1 [Mus musculus]
Length = 615
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|110625908|ref|NP_663409.2| nuclear receptor subfamily 1 group D member 1 [Mus musculus]
gi|123797485|sp|Q3UV55.1|NR1D1_MOUSE RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|74191988|dbj|BAE32932.1| unnamed protein product [Mus musculus]
gi|74210239|dbj|BAE23342.1| unnamed protein product [Mus musculus]
gi|74212726|dbj|BAE33339.1| unnamed protein product [Mus musculus]
gi|74215751|dbj|BAE23418.1| unnamed protein product [Mus musculus]
gi|148684219|gb|EDL16166.1| nuclear receptor subfamily 1, group D, member 1 [Mus musculus]
Length = 615
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|291405975|ref|XP_002719395.1| PREDICTED: nuclear receptor subfamily 1, group D, member 1
[Oryctolagus cuniculus]
Length = 616
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 418 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 477
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 478 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 537
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 538 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 597
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 598 RTLNNMHSEKLLSFRVDAQ 616
>gi|164663889|ref|NP_001106893.1| nuclear receptor subfamily 1 group D member 1 isoform 1 [Rattus
norvegicus]
Length = 615
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|149054137|gb|EDM05954.1| nuclear receptor subfamily 1, group D, member 1, isoform CRA_b
[Rattus norvegicus]
Length = 614
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|431890671|gb|ELK01550.1| Nuclear receptor subfamily 1 group D member 1 [Pteropus alecto]
Length = 615
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|354496831|ref|XP_003510528.1| PREDICTED: nuclear receptor subfamily 1 group D member 1
[Cricetulus griseus]
Length = 615
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|410980965|ref|XP_003996844.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Felis
catus]
Length = 611
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 413 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 472
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 473 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 532
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 533 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 592
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 593 RTLNNMHSEKLLSFRVDAQ 611
>gi|345805420|ref|XP_003435298.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Canis
lupus familiaris]
Length = 612
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 414 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 473
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 474 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 533
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 534 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 593
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 594 RTLNNMHSEKLLSFRVDAQ 612
>gi|440904253|gb|ELR54792.1| Nuclear receptor subfamily 1 group D member 1 [Bos grunniens mutus]
Length = 587
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 389 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 448
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 449 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 508
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 509 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 568
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 569 RTLNNMHSEKLLSFRVDAQ 587
>gi|196259779|ref|NP_001124501.1| nuclear receptor subfamily 1 group D member 1 [Ovis aries]
gi|263504928|sp|B3SV56.1|NR1D1_SHEEP RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|157399613|gb|ABV53446.1| rev-erb alpha [Ovis aries]
Length = 614
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|118151272|ref|NP_001071568.1| nuclear receptor subfamily 1 group D member 1 [Bos taurus]
gi|122132423|sp|Q08E02.1|NR1D1_BOVIN RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|115305248|gb|AAI23489.1| Nuclear receptor subfamily 1, group D, member 1 [Bos taurus]
gi|296476380|tpg|DAA18495.1| TPA: nuclear receptor subfamily 1 group D member 1 [Bos taurus]
Length = 613
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
>gi|332258547|ref|XP_003278358.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 1 [Nomascus leucogenys]
Length = 571
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 373 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 432
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 433 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLHELGAMGMGDLLNAMFDFSEKLNSLALTEE 492
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 493 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 552
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 553 RTLNNMHSEKLLSFRVDAQ 571
>gi|344256924|gb|EGW13028.1| Nuclear receptor subfamily 1 group D member 1 [Cricetulus griseus]
Length = 508
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 310 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 369
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 370 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 429
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 430 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 489
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 490 RTLNNMHSEKLLSFRVDAQ 508
>gi|164663891|ref|NP_665718.2| nuclear receptor subfamily 1 group D member 1 isoform 2 [Rattus
norvegicus]
gi|149054136|gb|EDM05953.1| nuclear receptor subfamily 1, group D, member 1, isoform CRA_a
[Rattus norvegicus]
Length = 508
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 310 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 369
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 370 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 429
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 430 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 489
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 490 RTLNNMHSEKLLSFRVDAQ 508
>gi|403304593|ref|XP_003942879.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Saimiri
boliviensis boliviensis]
Length = 615
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|402900086|ref|XP_003913011.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Papio
anubis]
Length = 613
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
>gi|355768148|gb|EHH62688.1| V-erbA-related protein 1 [Macaca fascicularis]
Length = 614
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|380818212|gb|AFE80980.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
gi|383423059|gb|AFH34743.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
gi|384950492|gb|AFI38851.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
Length = 613
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
>gi|387539836|gb|AFJ70545.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
Length = 613
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
>gi|395749214|ref|XP_002827656.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 1 [Pongo abelii]
Length = 619
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 421 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 480
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 481 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 540
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 541 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 600
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 601 RTLNNMHSEKLLSFRVDAQ 619
>gi|189536156|ref|XP_691607.3| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Danio
rerio]
Length = 570
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
Query: 102 TLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
LACPLN P S P Q++ + FS+ F+P +R+VVEFAK IPGF LC DQV LLKA
Sbjct: 372 VLACPLNACPVSAPGVSSQQVWESFSQCFTPAVREVVEFAKGIPGFQELCQHDQVMLLKA 431
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G F+VL+VR +F+ + S+ LNG+ ++ L+D+MF+F+ +L+ L L
Sbjct: 432 GTFQVLMVRFCSLFNHKERSVTFLNGQTYPLGTLRGLGMGSLLDAMFEFSSKLSSLGLES 491
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
E+ LF ++V++S SG+ + VE+++ L L ++N+ HP+ +L ++L+ LPD
Sbjct: 492 DEMALFMAVVLVSADCSGISDMLAVEQLQEGLIRALRTLINRRHPDDNSLFSKLLLRLPD 551
Query: 280 LRTLNQLHSEKLVAFQM 296
LRTLN LHS+KL+AF++
Sbjct: 552 LRTLNNLHSDKLLAFRI 568
>gi|355707861|gb|AES03087.1| nuclear receptor subfamily 1, group D, member 1 [Mustela putorius
furo]
Length = 619
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 422 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 481
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 482 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 541
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 542 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 601
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 602 RTLNNMHSEKLLSFRV 617
>gi|13430848|ref|NP_068370.1| nuclear receptor subfamily 1 group D member 1 [Homo sapiens]
gi|114667603|ref|XP_511468.2| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Pan
troglodytes]
gi|119100|sp|P20393.1|NR1D1_HUMAN RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|537520|gb|AAA52335.1| triiodothyronine receptor [Homo sapiens]
gi|33525229|gb|AAH56148.1| Nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|60820040|gb|AAX36521.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
gi|61363220|gb|AAX42355.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
gi|112180498|gb|AAH47875.1| Nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|119581040|gb|EAW60636.1| nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|208966878|dbj|BAG73453.1| nuclear receptor subfamily 1, group D, member 1 [synthetic
construct]
gi|325495533|gb|ADZ17372.1| nuclear receptor Rev-ErbA-alpha [Homo sapiens]
gi|410215240|gb|JAA04839.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410262434|gb|JAA19183.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410262436|gb|JAA19184.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410306374|gb|JAA31787.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410353607|gb|JAA43407.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410353609|gb|JAA43408.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
Length = 614
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|426348347|ref|XP_004041798.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|5804932|emb|CAB53540.1| Rev-ErbAalpha protein [Homo sapiens]
Length = 614
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|60654203|gb|AAX29794.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
Length = 615
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|397522886|ref|XP_003831479.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Pan
paniscus]
Length = 614
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
>gi|68132022|gb|AAY85277.1| Rev-erbgamma-A [Danio rerio]
Length = 462
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
Query: 102 TLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
LACPLN P S P Q++ + FS+ F+P +R+VVEFAK IPGF LC DQV LLKA
Sbjct: 264 VLACPLNACPVSAPGVSSQQVWESFSQCFTPAVREVVEFAKGIPGFQELCQHDQVMLLKA 323
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G F+VL+VR +F+ + S+ LNG+ ++ L+D+MF+F+ +L+ L L
Sbjct: 324 GTFQVLMVRFCSLFNHKERSVTFLNGQTYPLGTLRGLGMGSLLDAMFEFSSKLSSLGLES 383
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
E+ LF ++V++S SG+ + VE+++ L L ++N+ HP+ +L ++L+ LPD
Sbjct: 384 DEMALFMAVVLVSADCSGISDMLAVEQLQEGLIRALRTLINRRHPDDNSLFSKLLLRLPD 443
Query: 280 LRTLNQLHSEKLVAFQM 296
LRTLN LHS+KL+AF++
Sbjct: 444 LRTLNNLHSDKLLAFRI 460
>gi|74138696|dbj|BAE27164.1| unnamed protein product [Mus musculus]
Length = 615
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +D S F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDLSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
>gi|327263925|ref|XP_003216767.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like,
partial [Anolis carolinensis]
Length = 576
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
+ACPLN + G+ Q++ ++FS+ F+P +++VVEFAK IPGF LLC DQV LLKAG
Sbjct: 379 IACPLNATPYCSNGKSSQQVWEEFSQCFTPAVKEVVEFAKSIPGFQLLCQQDQVMLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
F+VL+VR + +F + + L+GE S+ + L+D+MF+F+E+L+ L L
Sbjct: 439 TFQVLMVRFSSLFSPKEKVVTFLSGETYSLCSLRTMGMGSLLDAMFEFSEKLSSLGLDAQ 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF ++V++S RSG+ + + VE ++ L L ++ + HP+ L +L+ LPDL
Sbjct: 499 EMALFMAVVLVSADRSGISDVDAVEILQEILIRALRTLVTKKHPDDSTLFPKLLLRLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN HSEKL+AF++
Sbjct: 559 RTLNNQHSEKLLAFRI 574
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 24 VRFGRVPKREKARILAAMQ---QSTNTKCTEKALAAELDD---------EQRMLSTVVRA 71
VRFGR+PKREK R+L MQ S N + L+ E D+ E+ +S + RA
Sbjct: 204 VRFGRIPKREKQRLLDEMQSYMNSLNETPMDVGLSPETDNASPPSPNSQEEEAISAISRA 263
Query: 72 HLDTCAFTADKIEPMLRRAREHPTYTACPST 102
+ D D+ L + P ACP T
Sbjct: 264 YHDIFVSGQDR----LGKHGGSPGSEACPLT 290
>gi|332105458|gb|AEE01362.1| ecdysone-induced protein 78c [Haliotis diversicolor]
Length = 469
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 170/310 (54%), Gaps = 29/310 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVV----RAHLDTCAFT 79
VR+GRVPKR K++ Q+ ++T ++ A L+++Q + V+ +AH C T
Sbjct: 167 VRYGRVPKRSKSQ---DGQRVSSTDSSQDQTA--LENKQLAIYDVILSISQAHHTHCGLT 221
Query: 80 ADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL-QDFSERFSPTIRDVVEF 138
DKI+ + R+ P P+ + L+ Q+ L+ Q S +P+I+ VVEF
Sbjct: 222 EDKIKVIQRKPATLMQQIKIPEQ---PVQFTAEELEAQRLLMWQHLSTLITPSIQSVVEF 278
Query: 139 AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNA 198
AKR+PGFS L DDQ+ L+K G FE+ L R+A MF+ + NS+ +G ++ +D + +
Sbjct: 279 AKRVPGFSELSQDDQLILIKTGFFEIWLTRMARMFNKEENSVTFEDGSIIPKDELDVVYS 338
Query: 199 RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHV 258
+ SMFD A N L+L+DTE+GLF+ IV+ S R GL + + VE+++ L L
Sbjct: 339 PEFVSSMFDVAASFNILNLNDTEVGLFTGIVLSSADRQGLSDSKSVEKIQDNLIEALKLQ 398
Query: 259 LNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ-----------MTE-----QQQQ 302
+++NH + NL A +I LP+LRTL H E L ++ +E +Q++
Sbjct: 399 VSRNHSTEENLFASIIMKLPELRTLGSKHQETLKWYRGHWEHVALPPLFSEIYDIPRQRK 458
Query: 303 LAAQQQQWHG 312
+ ++QW G
Sbjct: 459 MWLHRKQWQG 468
>gi|301779115|ref|XP_002924974.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Ailuropoda melanoleuca]
Length = 613
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+L+ L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLSSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
>gi|281344606|gb|EFB20190.1| hypothetical protein PANDA_014399 [Ailuropoda melanoleuca]
Length = 603
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 405 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 464
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+L+ L L++
Sbjct: 465 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLSSLALTEE 524
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 525 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 584
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 585 RTLNNMHSEKLLSFRVDAQ 603
>gi|348562363|ref|XP_003466980.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Cavia
porcellus]
Length = 611
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 130/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 413 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 472
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 473 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 532
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ + VE ++ L L ++ +N P + + +L+ LPDL
Sbjct: 533 ELGLFTAVVLVSADRSGMEDSASVEHLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 592
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 593 RTLNNMHSEKLLSFRVDAQ 611
>gi|417403318|gb|JAA48470.1| Putative nuclear receptor [Desmodus rotundus]
Length = 612
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 414 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 473
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+L+ L L++
Sbjct: 474 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELSAMGMGDLLNAMFDFSEKLSSLALTEE 533
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 534 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 593
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 594 RTLNNMHSEKLLSFRVDAQ 612
>gi|410899438|ref|XP_003963204.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Takifugu rubripes]
Length = 545
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 134/216 (62%), Gaps = 9/216 (4%)
Query: 90 AREHPTYTACP-------STLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
A P +CP LACPLN P S P + QE+ + FS+ F+P +++VVEFAK
Sbjct: 328 AENTPNQPSCPWKLAPGSKVLACPLNAWPVSGPERSSQEIWESFSQCFTPAVKEVVEFAK 387
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
IPGF L DQV LLK+G F+VL+VR +F+++ +++ LNG+ S+ +
Sbjct: 388 GIPGFQELSQHDQVMLLKSGTFQVLMVRFCTLFNAEKHTVTFLNGQTYPLSSLRALGMGS 447
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L+D+MF+F+E+L L L E+ LF ++V++S R+G+ + VE+++ L L ++
Sbjct: 448 LLDAMFEFSEKLGSLGLEPDEMALFMAVVLVSADRTGISDMRAVEQLQESLIRALRSLIT 507
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
++ P+ L +L+ LPDLRTLN +HS+KL+AF++
Sbjct: 508 RHRPDDTALFPKLLLRLPDLRTLNNMHSDKLLAFRI 543
>gi|296202764|ref|XP_002806908.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 1 [Callithrix jacchus]
Length = 612
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 130/199 (65%), Gaps = 4/199 (2%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L + + P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALPGLWYR--PLETSRFTKLLLKLPDL 593
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 594 RTLNNMHSEKLLSFRVDAQ 612
>gi|389614471|dbj|BAM20283.1| nuclear hormone receptor E75D, partial [Papilio xuthus]
Length = 157
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 113/154 (73%), Gaps = 7/154 (4%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M ++LPILK IL +YHNAPVRFGRVPKREKARILAAMQQS++++ E+A AAEL+D
Sbjct: 5 MGEDLPILKGILNRVVKYHNAPVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELEDA 64
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
R+L+ VVRAHLDTC FT D++ M RAR+ PTY+ TLACPLNP LQ ++E
Sbjct: 65 PRLLARVVRAHLDTCEFTRDRVAAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE-- 119
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVT 155
FS+RF+ IR V++FA IPGF LL DD+ T
Sbjct: 120 --FSQRFAHVIRGVIDFAGLIPGFQLLTQDDKFT 151
>gi|154147686|ref|NP_001093675.1| nuclear receptor subfamily 1, group D, member 1 [Xenopus (Silurana)
tropicalis]
gi|134025606|gb|AAI35991.1| nr1d1 protein [Xenopus (Silurana) tropicalis]
Length = 522
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 152/252 (60%), Gaps = 17/252 (6%)
Query: 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPST----------LACP 106
+DD ++S V AH + DK+ + + +HP T LACP
Sbjct: 273 HMDD---VISQVSMAHRQIFVYANDKVNK--KTSWDHPQPCWSHDTEDSHGNHNIRLACP 327
Query: 107 LNP--NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+N P++ QE+ +DFS F+P +R+VVEFA+ IPGF L +DQVTLLKAG FEV
Sbjct: 328 MNALHRGGPVRSVQEVWEDFSLSFTPAVREVVEFARHIPGFKDLTQNDQVTLLKAGTFEV 387
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
L+VR A +FD++ +S+ L+G +H+ L+ SMFDF+E+L+ L LS E+G+
Sbjct: 388 LMVRFASLFDAREHSLRFLSGATYSLPELHAMGMGELLSSMFDFSEKLSSLSLSQEELGI 447
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
F+++V++S RSG+ N LVE+++ L L ++ +N P + +L+ LPDLRTLN
Sbjct: 448 FTALVLVSADRSGMENSSLVEQLQETLIRALRSLILKNSPNDTSRFTKLLLRLPDLRTLN 507
Query: 285 QLHSEKLVAFQM 296
+HSEKL++F++
Sbjct: 508 NMHSEKLLSFRV 519
>gi|348521576|ref|XP_003448302.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oreochromis niloticus]
Length = 706
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 127/196 (64%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACPLN P S + QE+ + FS+ F+P +++VVEFAK IPGF L DQV LLK+G
Sbjct: 509 LACPLNACPVSGAERTSQEIWESFSQCFTPAVKEVVEFAKGIPGFQELSQQDQVMLLKSG 568
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
F+VL+VR +F++ +++ LNG+ ++ + L+D+MF+F+E+L L L
Sbjct: 569 TFQVLMVRFCTLFNAGEHTVTFLNGQTYPLPTLRALGMGSLLDAMFEFSEKLGSLGLEPD 628
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF ++V++S RSG+ + VE+++ L L ++ + P+ L ++L+ LPDL
Sbjct: 629 EMALFMAVVLVSADRSGISDTRAVEQLQEGLIRALRSLITRRRPDDTTLFSKLLLRLPDL 688
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN LHS+KL+AF++
Sbjct: 689 RTLNNLHSDKLLAFRI 704
>gi|348509890|ref|XP_003442479.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Oreochromis niloticus]
Length = 643
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 134/205 (65%), Gaps = 10/205 (4%)
Query: 102 TLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
LACP+N P++ P + Q++ +DFS F+P +R+VVEFAK IPGFS L +DQVTLLKA
Sbjct: 437 VLACPMNMQPHADPSKTPQQIWEDFSLSFTPAVREVVEFAKHIPGFSDLSQNDQVTLLKA 496
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G FEVL+VR A +F+ + ++ ++G + + + R L+ +MFDF+ +L L L
Sbjct: 497 GTFEVLMVRFASLFNMKEQTVTFVSGATYSLEELRAMGMRDLLGAMFDFSHKLAALELDS 556
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN--HPEQMNL------CA 271
E+GLF+++V++S RSG+ + VE+++ L L ++N++ PE +L
Sbjct: 557 EELGLFTAVVLVSADRSGIEDVVSVEQLQENLIRALRSLVNKSPVAPESEHLDVDSPRFT 616
Query: 272 ELISMLPDLRTLNQLHSEKLVAFQM 296
+L+ LPDLRTLN +HSEKL++F++
Sbjct: 617 KLLLKLPDLRTLNNMHSEKLLSFRI 641
>gi|432866253|ref|XP_004070760.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oryzias latipes]
Length = 574
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 127/197 (64%), Gaps = 2/197 (1%)
Query: 102 TLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
LACPLN P S + QE+ + FS+ F+P +++VVEFAK IPGF L DQV LLK+
Sbjct: 376 VLACPLNACPVSGAERTSQEIWESFSQCFTPAVKEVVEFAKGIPGFQELSQQDQVLLLKS 435
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G F+VL+VR +F++Q ++ LNG+ ++ + L+D+MF+F+E+L L L
Sbjct: 436 GTFQVLMVRFCTLFNAQERTVTFLNGQTYPLSTLRALGMGSLLDAMFEFSEKLGSLGLEP 495
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
E+ LF ++V++S RSG+ + E VE+++ L L ++ + P+ + +L+ LPD
Sbjct: 496 DEMALFMAVVLVSADRSGISDMEAVEQLQEGLIRALRSLITRRRPDDSAIFPKLLLRLPD 555
Query: 280 LRTLNQLHSEKLVAFQM 296
LRTLN LHS+KL+AF++
Sbjct: 556 LRTLNNLHSDKLLAFRI 572
>gi|148226871|ref|NP_001085940.1| nuclear receptor subfamily 1, group D, member 1 [Xenopus laevis]
gi|49115842|gb|AAH73584.1| MGC82865 protein [Xenopus laevis]
gi|49119474|gb|AAH73572.1| MGC82865 protein [Xenopus laevis]
Length = 519
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 149/250 (59%), Gaps = 12/250 (4%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREH-----PTYT-----ACPSTLACPLN 108
D ++S V AH + DK+ +H P ++ + LACP+N
Sbjct: 267 DHNDEVISQVAMAHQQIFVYANDKVGKKTSWDHQHGNQPPPCWSHDSEESHDIRLACPMN 326
Query: 109 P--NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
P++ QE+ + FS F+P +R+VVEFA+ IPGF+ L +DQVTLLKAG FEVL+
Sbjct: 327 ALHQGGPVRSVQEVWEHFSLSFTPAVREVVEFARHIPGFNDLTQNDQVTLLKAGTFEVLM 386
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
VR A +FD++ S+ L+G +H+ L+ SMFDF+E+L+ L LS E+G+F+
Sbjct: 387 VRFASLFDARERSLRFLSGATYSLPELHAMGMGELLGSMFDFSEKLSSLSLSQEELGIFT 446
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
++V++S RSG+ N LVE+++ L L ++ +N P + +L+ LPDLRTLN L
Sbjct: 447 ALVLVSADRSGMENSSLVEQLQETLIRALRSLILKNSPNDTSRFTKLLLRLPDLRTLNNL 506
Query: 287 HSEKLVAFQM 296
HSEKL++F++
Sbjct: 507 HSEKLLSFRV 516
>gi|348507669|ref|XP_003441378.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Oreochromis niloticus]
Length = 597
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 9/216 (4%)
Query: 90 AREHPTYTACP-------STLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
ARE CP LACPLN P + + QE+ + FS+ F+P +++VVEFAK
Sbjct: 380 ARESSNQNQCPWKLNGGAKVLACPLNSCPVAPASRSSQEVWESFSQCFTPAVKEVVEFAK 439
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
IPGF L DQV LLK+G F+VL+VR +FD + ++ LNG+ S+ +
Sbjct: 440 SIPGFQTLSQHDQVMLLKSGTFQVLMVRFCSLFDPKERTVTFLNGQTYSLASLRALGMGS 499
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L+DSMFDF+E+L L L E+ LF ++V++S RSG+ VE+++ L L ++
Sbjct: 500 LLDSMFDFSEKLGSLGLEPDEMALFMAVVLVSADRSGIVEVGAVEQLQENLIKALRSLIT 559
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
P+ L +L+ LPDLRTLN HS+KL+AF++
Sbjct: 560 SRRPDDSTLFPKLLLRLPDLRTLNNQHSDKLLAFRI 595
>gi|432910618|ref|XP_004078441.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oryzias latipes]
Length = 566
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 134/205 (65%), Gaps = 3/205 (1%)
Query: 95 TYTACPSTLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDD 152
T A + L CP+N P P + QE+ ++FS F+P +R+VVEFAKRIPGF L D
Sbjct: 360 TSAANRAYLVCPMNTSPYVDPGKPSQEIWEEFSMSFTPAVREVVEFAKRIPGFRDLSEHD 419
Query: 153 QVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERL 212
QV+LLKAG FEVL+VR A +F+ ++ L+G D++ S A L++SM +F+E+L
Sbjct: 420 QVSLLKAGTFEVLMVRFASLFNMSERTVTFLSGRRYSIDTLRSLGAGELLNSMCEFSEKL 479
Query: 213 NGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQ-MNLCA 271
L L E+ LF+++V++S RSG+++ + VE ++ KL L +++ QNH E+
Sbjct: 480 AALRLDPDEMSLFTAVVLVSADRSGIQDLDSVEALQDKLIRALRNLVMQNHGEESATTFT 539
Query: 272 ELISMLPDLRTLNQLHSEKLVAFQM 296
+L+ LP+LR+LN +HSE+L++F++
Sbjct: 540 KLLLKLPELRSLNNMHSEELLSFKV 564
>gi|299856867|pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 139/236 (58%), Gaps = 8/236 (3%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
++S V RAH + + DK+ P P P+ + QE+ +D
Sbjct: 18 VISQVARAHREIFTYAHDKLGS-------SPGNFNANHASGSPY-PHGRSGRTVQEIWED 69
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
FS F+P +R+VVEFAK IPGF L DQVTLLKAG FEVL+VR A +F+ + +++ L
Sbjct: 70 FSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFL 129
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ + + L+ +MFDF+E+LN L L++ E+GLF+++V++S RSG+ N
Sbjct: 130 SRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSAS 189
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
VE+++ L L ++ +N P + + +L+ LPDLRTLN +HSEKL++F++ Q
Sbjct: 190 VEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ 245
>gi|432859606|ref|XP_004069177.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Oryzias latipes]
Length = 568
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 140/250 (56%), Gaps = 24/250 (9%)
Query: 71 AHLDTCAFTADKIE-PMLRRAREHPTYTA--------------CP-------STLACPLN 108
A++D FT++ + PM R H T+ CP LACPLN
Sbjct: 317 ANVDNYIFTSNHNQCPMNRNQSPHTYATSQNSFPASDFQNQNSCPWKLNGGAKVLACPLN 376
Query: 109 --PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
P + + QE+ + FS+ F+P +++VVEFAK IPGF L DQV LLK+G F+VL+
Sbjct: 377 SCPVAPASRSSQEVWESFSQCFTPAVKEVVEFAKSIPGFQNLSQHDQVMLLKSGTFQVLM 436
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
VR +FD + ++ LNG+ S+ + L+D+MFDF+E+L L L E+ LF
Sbjct: 437 VRFCSLFDPKERTVTFLNGQTYSLASLRALGMGSLLDAMFDFSEKLGSLGLEPDEMALFM 496
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
++V++S RSG+ VE+++ L L +++ PE L +L+ LPDLRTLN
Sbjct: 497 AVVLVSADRSGIAEVAAVEQLQENLIKALRSLISSRRPEDSTLFPKLLLRLPDLRTLNNQ 556
Query: 287 HSEKLVAFQM 296
HS+KL+AF++
Sbjct: 557 HSDKLLAFRI 566
>gi|84993189|emb|CAJ43767.1| orphan nuclear receptor NR1D1 [Microtus arvalis]
Length = 204
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 124/189 (65%), Gaps = 2/189 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 16 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 75
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 76 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 135
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 136 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 195
Query: 281 RTLNQLHSE 289
RTLN +HSE
Sbjct: 196 RTLNNMHSE 204
>gi|26328989|dbj|BAC28233.1| unnamed protein product [Mus musculus]
Length = 166
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 115/164 (70%)
Query: 133 RDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDS 192
++VVEFAKRIPGF L DQV LLKAG FEVL+VR A +FD++ ++ L+G+ D
Sbjct: 1 KEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDD 60
Query: 193 IHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLE 252
+HS A L+ SMF+F+E+LN L LSD E+ LF+++V++S RSG+ N VE ++ L
Sbjct: 61 LHSMGAGDLLSSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLI 120
Query: 253 NMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L ++ +NHP + ++ +L+ LPDLR+LN +HSE+L+AF++
Sbjct: 121 RALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKV 164
>gi|292629355|ref|XP_700687.4| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Danio
rerio]
Length = 576
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 2/197 (1%)
Query: 102 TLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
LACPLN P S Q++ + FS+ F+P +++VVEFAK IPGF L DQV LLKA
Sbjct: 378 VLACPLNACPVSSASHSSQQVWESFSQCFTPAVKEVVEFAKSIPGFQALSQHDQVMLLKA 437
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G F+VL+VR +F+++ ++ LNG+ + L+D+MF+F+E+L + L
Sbjct: 438 GTFQVLMVRFCSLFNAKERTVTFLNGQTYPLSYLRVLGMGNLLDAMFEFSEKLGSMGLEA 497
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
E+ LF ++V++S RSG+ + VE+++ L L ++ + PE +L +L+ LPD
Sbjct: 498 DEMALFMAVVLVSADRSGISDMGAVEQLQEDLIGALRALITRRRPEDSSLFPKLLLRLPD 557
Query: 280 LRTLNQLHSEKLVAFQM 296
LRTLN HSEKL+AF +
Sbjct: 558 LRTLNNQHSEKLLAFHI 574
>gi|348511147|ref|XP_003443106.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Oreochromis niloticus]
Length = 599
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 130/197 (65%), Gaps = 3/197 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N P P + QE+ ++FS F+P +R+VVEFAK IPGF L DQV LLKAG
Sbjct: 401 LLCPMNTSPYVDPSKPSQEVWEEFSMSFTPAVREVVEFAKGIPGFRDLPEHDQVGLLKAG 460
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ ++ L+G+ D++ S A L++SM +F+E+L L LS
Sbjct: 461 TFEVLMVRFASLFNIAEQTVTFLSGKCYSLDTLRSLGAGELLNSMCEFSEKLAALRLSAD 520
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP-EQMNLCAELISMLPD 279
E+ LF+++V++S RSG+++ + VE ++ KL L +++ QNH E +L+ LP+
Sbjct: 521 EMSLFTAVVLVSADRSGIQDLKSVEALQDKLIRALRNLVMQNHGDESATTFTKLLLKLPE 580
Query: 280 LRTLNQLHSEKLVAFQM 296
LR+LN +HSE+L++F++
Sbjct: 581 LRSLNNMHSEELLSFKV 597
>gi|94482821|gb|ABF22437.1| thyroid hormone receptor alpha 1 [Takifugu rubripes]
Length = 321
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 104 ACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
ACPLN P S P + QE+ + FS+ F+P +++VVEFAK IPGF L DQV LLK+G
Sbjct: 125 ACPLNAWPVSGPERSSQEIWESFSQCFTPAVKEVVEFAKGIPGFQELSQHDQVMLLKSGT 184
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
F+VL+VR +F+++ +++ LNG+ S+ + L+D+MF+F+E+L L L E
Sbjct: 185 FQVLMVRFCTLFNAEKHTVTFLNGQTYPLSSLRALGMGSLLDAMFEFSEKLGSLGLEPDE 244
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
+ LF ++V++S R+G+ + VE+++ L L ++ ++ P+ L +L+ LPDLR
Sbjct: 245 MALFMAVVLVSADRTGISDMRAVEQLQESLIRALRSLITRHRPDDTALFPKLLLRLPDLR 304
Query: 282 TLNQLHSEKLVAFQM 296
TLN +HS+KL+AF++
Sbjct: 305 TLNNMHSDKLLAFRI 319
>gi|194390340|dbj|BAG61939.1| unnamed protein product [Homo sapiens]
Length = 195
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 127/195 (65%), Gaps = 2/195 (1%)
Query: 107 LNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG FEV
Sbjct: 1 MNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEV 60
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
L+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++ E+GL
Sbjct: 61 LMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGL 120
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
F+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDLRTLN
Sbjct: 121 FTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLN 180
Query: 285 QLHSEKLVAFQMTEQ 299
+HSEKL++F++ Q
Sbjct: 181 NMHSEKLLSFRVDAQ 195
>gi|344288189|ref|XP_003415833.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 2-like [Loxodonta africana]
Length = 581
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 125/196 (63%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 384 LVCPMSKSPYVGPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 443
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D++HS A L++SMF+F+E+LN L LSD
Sbjct: 444 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDALHSMGAGDLLNSMFEFSEKLNALQLSDE 503
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N ++ L L ++ +NHP + ++ +L+
Sbjct: 504 EMSLFTAVVLVSADRSGIENVHSXGALQETLIRALRTLIMKNHPNEXSIFTKLLLKCQTC 563
Query: 281 RTLNQLHSEKLVAFQM 296
+HSE+L+AF++
Sbjct: 564 GLXTNMHSEELLAFKV 579
>gi|410904527|ref|XP_003965743.1| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Takifugu
rubripes]
Length = 599
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 130/197 (65%), Gaps = 3/197 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N P P + QE+ ++FS F+P +++VV+FAKRIPGF L +DQV+LLKAG
Sbjct: 401 LVCPMNTSPYVGPNKSSQEIWEEFSMSFTPAVQEVVDFAKRIPGFRDLPKNDQVSLLKAG 460
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F++ ++ L+G+ D++ S A L+ SM +F+E+L L L
Sbjct: 461 TFEVLMVRFASLFNAAERTVTFLSGKRYSLDTLCSLGAGELLLSMCEFSEKLAALRLDSD 520
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP-EQMNLCAELISMLPD 279
E+ LF+++V++S RSG+++ VE ++ +L L +++ + H E +L+ LP+
Sbjct: 521 EMSLFAAVVLVSADRSGIQDLNAVEALQDQLIRALRNLIGEKHGDESATTFTKLLLKLPE 580
Query: 280 LRTLNQLHSEKLVAFQM 296
LR+LN LHSE+L++F++
Sbjct: 581 LRSLNNLHSEELLSFKV 597
>gi|194578847|ref|NP_001124064.1| nuclear receptor subfamily 1, group D, member 2a [Danio rerio]
gi|190339108|gb|AAI62908.1| Nr1d2a protein [Danio rerio]
Length = 504
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 125/196 (63%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P + E+ ++FS F P +R+VVEFAKRIPGF L DQV LLKAG
Sbjct: 307 LVCPMSASPFVDATRPGHEVWEEFSRSFIPAVREVVEFAKRIPGFQELSQHDQVNLLKAG 366
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR +FD Q ++ ++G D + S A L++ MF+F+E+L L L+D
Sbjct: 367 TFEVLMVRFVPLFDVQQRTVSFMSGRRYSVDLLRSMGAGELLNCMFEFSEKLAALQLNDE 426
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LFS++V++S RS + + VE ++ L L +++ +NH + ++ +L+ LP+L
Sbjct: 427 EMSLFSAVVLVSADRSAIEDVVGVEALQESLIRALRNLIMKNHSNESSVFTKLLLKLPEL 486
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 487 RSLNNMHSEELLAFKI 502
>gi|68132024|gb|AAY85278.1| Rev-erbgamma-B, partial [Danio rerio]
Length = 353
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 128/210 (60%), Gaps = 7/210 (3%)
Query: 92 EHPTYTACPSTLACP--LNPNSHPL---QGQQELLQDFSERFSPTIRDVVEFAKRIPGFS 146
+H +Y+ T +CP L+P + L Q++ + FS+ F+P +++VVEFAK IPGF
Sbjct: 144 KHNSYST--QTQSCPWRLSPGAKVLVASHSSQQVWESFSQCFTPAVKEVVEFAKSIPGFQ 201
Query: 147 LLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMF 206
L DQV LLKAG F+VL+VR +F+++ ++ LNG+ + L+D+MF
Sbjct: 202 ALSQHDQVMLLKAGTFQVLMVRFCSLFNAKERTVTFLNGQTYPLSYLRVLGMGNLLDAMF 261
Query: 207 DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQ 266
+F+E+L + L E+ LF ++V++S RSG+ + VE+++ L L ++ + PE
Sbjct: 262 EFSEKLGSMGLEADEMALFMAVVLVSADRSGISDMGAVEQLQEDLIGALRALITRRRPED 321
Query: 267 MNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+L +L+ LPDLRTLN HSEKL+AF +
Sbjct: 322 SSLFPKLLLRLPDLRTLNNQHSEKLLAFHI 351
>gi|351705192|gb|EHB08111.1| Nuclear receptor subfamily 1 group D member 2, partial
[Heterocephalus glaber]
Length = 574
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 133/196 (67%), Gaps = 3/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LKAG
Sbjct: 378 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNNLKAG 437
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 438 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 497
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L +LPDL
Sbjct: 498 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKL-LLLPDL 556
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 557 RSLNNMHSEELLAFKV 572
>gi|410919461|ref|XP_003973203.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like
[Takifugu rubripes]
Length = 562
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Query: 90 AREHPTYTACPSTLACPLNPNSHPL---QGQQELLQDFSERFSPTIRDVVEFAKRIPGFS 146
ARE + CP L N + L + QE+ FS+ F+P +R+VVEFAK IPGF
Sbjct: 355 ARESHNQSPCPWKL----NGGAKVLVASRSSQEVWDSFSQCFTPAVREVVEFAKSIPGFQ 410
Query: 147 LLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMF 206
L DQV LLK+G F+VL+VR +FD++ ++ LNG+ S+ + L+D+MF
Sbjct: 411 SLSQHDQVMLLKSGTFQVLMVRFCSLFDAKERAVTFLNGQTYSLASLRALGMGSLLDAMF 470
Query: 207 DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQ 266
DF+E+L + L E+ LF ++V++S RSG+ + VE+++ L L ++ P+
Sbjct: 471 DFSEKLGSMGLEPDEMALFMAVVLVSADRSGIVDVGAVEQLQENLIKALRSLITSRRPDD 530
Query: 267 MNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +L+ LPDLRTLN HS+KL+AF++
Sbjct: 531 STLFPKLLLRLPDLRTLNNHHSDKLLAFRI 560
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 146/269 (54%), Gaps = 5/269 (1%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VR+GRVPKR K++ + + ST++ + AL + ++ + +AH C T D+I
Sbjct: 886 VRYGRVPKRSKSQDDSCVS-STDSNMDQSALENKQLAIYDIILNISQAHHTNCLVTEDRI 944
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRDVVEFAKRI 142
+ + R+ + PST P+ + L+ Q+ + + +P I VVEFAKR+
Sbjct: 945 KNLTRKPSSLMQQISIPST---PVQFSDEELEAQKLSMWHCLASFITPAINSVVEFAKRV 1001
Query: 143 PGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLM 202
GF L DDQ+ L+K G FEV L+R+A MF+ + +G ++ ++ + + +
Sbjct: 1002 TGFPELNQDDQLILIKCGFFEVWLMRMARMFNKAEGCLTFEDGSIIQKEELGVVFSPDFV 1061
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
MFD A+ LN L+L+DTEIGLF +IV+ +P R GL N + VE ++ +L L + +N
Sbjct: 1062 SCMFDLAQSLNQLNLNDTEIGLFCAIVLATPDRKGLENPKAVETIQDRLIEALKLQILRN 1121
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKL 291
H + NL I LP LRTL H E L
Sbjct: 1122 HSTEENLFGTTIVKLPQLRTLGVQHDEIL 1150
>gi|327275471|ref|XP_003222497.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Anolis carolinensis]
Length = 611
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N + + G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQV+LLKAG
Sbjct: 413 LACPMNCHPYGRSGRTVQEIWEDFSLSFTPAVREVVEFAKHIPGFQELSQHDQVSLLKAG 472
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + ++ ++ + + L+ SMF+F+E+L L LS+
Sbjct: 473 TFEVLMVRFASLFNVKEQTVTFMSRTKYSLEELWGMGMGDLLTSMFEFSEKLGSLELSEE 532
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V+IS RSG+ N+ VE+++ L L ++ +NHP++ + +L+ LPDL
Sbjct: 533 ELGLFTAVVLISADRSGIENQASVEQLQETLIRALRALILKNHPQETSRFTKLLLKLPDL 592
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 593 RTLNNMHSEKLLSFRIDAQ 611
>gi|355568630|gb|EHH24911.1| V-erbA-related protein 1 [Macaca mulatta]
Length = 668
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 132/231 (57%), Gaps = 34/231 (14%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 438 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 497
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 498 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 557
Query: 221 EIGLFSSIVVISPS--------------------------------RSGLRNKELVERMR 248
E+GLF+++V++S RSG+ N VE+++
Sbjct: 558 ELGLFTAVVLVSAGRGCIACQVLADLRFLVRGARGVRLTAVVFPTDRSGMENSASVEQLQ 617
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
L L ++ +N P + + +L+ LPDLRTLN +HSEKL++F++ Q
Sbjct: 618 ETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ 668
>gi|443732699|gb|ELU17326.1| hypothetical protein CAPTEDRAFT_93472, partial [Capitella teleta]
Length = 392
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 159/287 (55%), Gaps = 27/287 (9%)
Query: 24 VRFGRVPKREKA----RILAAMQQSTNTKCTEKALAAELDDEQ----RMLSTVVRAHLDT 75
VR+GRVPKR ++ R+ + + S+ +++ A L+ +Q ++ T+ +AH
Sbjct: 64 VRYGRVPKRSRSTDEQRVSTSGESSSPQASSQEQ--AVLESKQLAMYDIILTISQAHHAN 121
Query: 76 CAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-------ELLQDFSERF 128
C T DK++ + + P++L L+ +S L Q+ + Q+ +
Sbjct: 122 CLTTEDKVKAL----------STNPTSLISQLDCSSDLLSTQETVELHRCRMFQNLAAFV 171
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
+P I VV FAK++PG L DDQ+ L+K G FE+ L R+ MF+SQ N++ +G ++
Sbjct: 172 TPVINMVVAFAKQVPGMCNLSQDDQLILIKGGFFEIWLTRMVRMFNSQDNTLTFGDGSLV 231
Query: 189 VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248
R + + L+ +MF FA L L+DTEIGLFS +V+ + R+GL +K+ VER++
Sbjct: 232 ARAELEAIYLPELVQAMFSFARSFATLRLNDTEIGLFSGVVLATADRTGLSDKKTVERIQ 291
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
KL L +++NH + NL A ++ +P+LRTL H+++L F+
Sbjct: 292 DKLIEALKLQISRNHALEPNLFASILMKIPELRTLGAKHTDQLSWFR 338
>gi|339241333|ref|XP_003376592.1| nuclear hormone receptor E75 [Trichinella spiralis]
gi|316974682|gb|EFV58163.1| nuclear hormone receptor E75 [Trichinella spiralis]
Length = 534
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 176/357 (49%), Gaps = 23/357 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVV----RAHLDTCAFT 79
VR+GRVPKR + R+ ++ ++ T E + E++ Q L ++ +AH C +
Sbjct: 181 VRYGRVPKRSRDRMQEDVRVTSMTG--ESEVDNEVEKHQLALYDIILSVSQAHHSNCNYA 238
Query: 80 ADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD-FSERFSPTIRDVVEF 138
DK+ + R P T L P + ++ Q+ ++ + S+ +P ++ VVEF
Sbjct: 239 EDKVRNLSHRPMHFPIERRFTMTNGERLIPIGNMMEQQKIVMWETLSQYITPEVQRVVEF 298
Query: 139 AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNA 198
AKR+P F+ DQ+ L+K G FEV L+R++ M + Q +M +G L RD +
Sbjct: 299 AKRLPHFTDFLQGDQLVLIKGGFFEVWLIRISRMLNVQFGTMTMCDGSFLGRDQLDVIYN 358
Query: 199 RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHV 258
L++++F FA N +HL+D EIGLFS++V++S R GL + + VE + KL L
Sbjct: 359 PDLVNAIFQFAAGFNNMHLNDGEIGLFSAVVLLSADRVGLSDPKSVETQQEKLIEALKLQ 418
Query: 259 LNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKS 318
L +NH + LI L +LR+L H++ L+ ++ ++ ++
Sbjct: 419 LTRNHSSDPQALSSLILKLSELRSLTARHNDVLMWYRANYRRVKVP-------------- 464
Query: 319 PTGSSWSDVTMEEVKSPLG--SVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAG 373
P S D+ ++V+ +G +VSST + SN + A N P + G
Sbjct: 465 PLFSEIYDIPRDDVEMGVGDVAVSSTHQISSNSHESPVSTNHAAALNYPQYVVDVKG 521
>gi|47228662|emb|CAG07394.1| unnamed protein product [Tetraodon nigroviridis]
Length = 539
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 46/251 (18%)
Query: 90 AREHPTYTACP-------STLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
A P +CP LACPLN P S P + QE+ + FS+ F+P +++VVEFAK
Sbjct: 285 AENTPNQPSCPWNLAPGSKVLACPLNAWPVSGPERSSQEIWESFSQCFTPAVKEVVEFAK 344
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
IPGF L DQV LLK+G F+VL+VR +F+++ +++ LNG+ ++ +
Sbjct: 345 GIPGFQELSQHDQVMLLKSGTFQVLMVRFCTLFNAENHTVTFLNGQTYPLSTLRALGMGS 404
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVV-------------------------ISPS- 234
L+D+MF+F+E+L L L E+ LF ++V+ +SPS
Sbjct: 405 LLDAMFEFSEKLGSLGLEPDEMALFMAVVLVSAGREGTLFNDKYCTRVVHQTDYCVSPSA 464
Query: 235 -----------RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
R+G+ + + VE+++ L L ++ ++ P+ L +L+ LPDLRTL
Sbjct: 465 FCTHILLCSSDRTGISDMQAVEQLQESLIRALRSLITRHRPDDTALFPKLLLRLPDLRTL 524
Query: 284 NQLHSEKLVAF 294
N LHS+KL+AF
Sbjct: 525 NNLHSDKLLAF 535
>gi|47218769|emb|CAG02755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 119/182 (65%), Gaps = 5/182 (2%)
Query: 90 AREHPTYTACP---STLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPG 144
+R H ++CP + L CP+N P P + QE+ ++FS F+P +++VV+FAKRIPG
Sbjct: 128 SRGHDEPSSCPNGRTRLICPMNTSPYVSPNKSSQEIWEEFSMSFTPAVQEVVDFAKRIPG 187
Query: 145 FSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDS 204
F L +DQV+LLKAG FEVL+VR A +FD+ ++ L+G+ D++ S A L+ S
Sbjct: 188 FRDLPKNDQVSLLKAGTFEVLMVRFASLFDAAERTLTFLSGKRYSLDTLCSLGAGELLLS 247
Query: 205 MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP 264
M +F+E+L L L E+ LF+++V++S RSG+++ + VE ++ +L L +++ +NH
Sbjct: 248 MCEFSEKLAALRLDSEEMSLFTAVVLVSADRSGIQDLKAVEALQDQLIRALRNLIAENHG 307
Query: 265 EQ 266
++
Sbjct: 308 DE 309
>gi|31322531|gb|AAP15171.1| rev-erb alpha [Arvicanthis ansorgei]
Length = 313
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 167 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 226
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 227 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 286
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERM 247
E+GLF+++V++S RSG+ N VE++
Sbjct: 287 ELGLFTAVVLVSADRSGMENSASVEQL 313
>gi|432861682|ref|XP_004069686.1| PREDICTED: nuclear receptor ROR-alpha-like [Oryzias latipes]
Length = 519
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPS 101
TN + + AEL + + + ++H++TC + ++++ M +A E +Y + P
Sbjct: 256 TNGETSPTVSMAEL---EHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESYQSKP- 311
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 312 ---------------REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS 356
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
EV+ VR+ FDSQ N++ +G+ D S L+ S+F+F + L +HLS+ E
Sbjct: 357 LEVVFVRMCRAFDSQNNTVY-FDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDE 415
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
I LFS+ V++S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR
Sbjct: 416 IALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLR 474
Query: 282 TLNQLHSEKLVAFQ 295
L H+EKL AF+
Sbjct: 475 ALCSRHTEKLTAFK 488
>gi|410908014|ref|XP_003967486.1| PREDICTED: nuclear receptor ROR-alpha-like [Takifugu rubripes]
Length = 519
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPS 101
TN + + AEL + + + ++H++TC + ++++ M +A E +Y + P
Sbjct: 256 TNGETSPTVSMAEL---EHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESYQSKP- 311
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 312 ---------------REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS 356
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
EV+ VR+ FDSQ N++ +G+ D S L+ S+F+F + L +HLS+ E
Sbjct: 357 LEVVFVRMCRAFDSQNNTVY-FDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDE 415
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
I LFS+ V++S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR
Sbjct: 416 IALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLR 474
Query: 282 TLNQLHSEKLVAFQ 295
L H+EKL AF+
Sbjct: 475 ALCSRHTEKLTAFK 488
>gi|270004903|gb|EFA01351.1| E78 nuclear receptor [Tribolium castaneum]
Length = 368
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 149/282 (52%), Gaps = 18/282 (6%)
Query: 22 APVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLS------TVVRAHLDT 75
VR+GRVPKR + R + ++S+ T+ A + D E + L+ TV +AH
Sbjct: 73 GSVRYGRVPKRSRER---STEESSRVTTTD---ADQSDSETKQLAVYDVILTVSQAHHAN 126
Query: 76 CAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRD 134
C +T + ++R+ P + S +A + + L+ ++ L Q F+ +P+++
Sbjct: 127 CGYTEEHTRNLVRKPVVVPPSSPADSEVA---SSTAEALEQERCWLWQQFAANITPSVQR 183
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
VVEFAKR+PGF L DDQ+ L+K G FE+ L +A + + M+ +G + R +
Sbjct: 184 VVEFAKRVPGFCDLGQDDQLILIKIGFFEIWLSHVARL--TSNTVMMFDDGTTVTRQQLE 241
Query: 195 SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENM 254
+ S+ FA N L L+DTE+GLFS++V+++ RSG+ + + +E + KL
Sbjct: 242 IMYDADFISSVMHFANTFNSLALNDTEVGLFSAVVLLTADRSGITDVKSIEHHQDKLIEA 301
Query: 255 LMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L + +NH + L + L+ LP+LR L HS L F+M
Sbjct: 302 LKVQVGRNHANEPQLFSSLLIKLPELRNLGAKHSAHLDWFRM 343
>gi|348505860|ref|XP_003440478.1| PREDICTED: nuclear receptor ROR-alpha-like [Oreochromis niloticus]
Length = 519
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 138/254 (54%), Gaps = 24/254 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPS 101
TN + + AEL + + + ++H++TC + ++++ M +A E +Y P
Sbjct: 256 TNGETSPTVSMAEL---EHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESYQNKP- 311
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 312 ---------------REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS 356
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
EV+ VR+ FDSQ N++ +G+ D S L+ S+F+F + L +HLS+ E
Sbjct: 357 LEVVFVRMCRAFDSQNNTVY-FDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDE 415
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
I LFS+ V++S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR
Sbjct: 416 IALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLR 474
Query: 282 TLNQLHSEKLVAFQ 295
L H+EKL AF+
Sbjct: 475 ALCSRHTEKLTAFK 488
>gi|47225829|emb|CAF98309.1| unnamed protein product [Tetraodon nigroviridis]
Length = 459
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 24/254 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPS 101
TN + + AEL + + + ++H++TC + ++++ M +A E +Y + P
Sbjct: 196 TNGETSPTVSMAEL---EHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESYQSKP- 251
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 252 ---------------REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS 296
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
EV+ VR+ FDSQ N++ +G+ D S L+ S+F+F + L +HLS+ E
Sbjct: 297 LEVVFVRMCRAFDSQNNTVY-FDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDE 355
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
I LFS+ V++S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR
Sbjct: 356 IALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLR 414
Query: 282 TLNQLHSEKLVAFQ 295
L H+EKL AF+
Sbjct: 415 ALCSRHTEKLTAFK 428
>gi|189235910|ref|XP_966635.2| PREDICTED: similar to GA14768-PA, partial [Tribolium castaneum]
Length = 313
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 149/280 (53%), Gaps = 18/280 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLS------TVVRAHLDTCA 77
VR+GRVPKR + R + ++S+ T+ A + D E + L+ TV +AH C
Sbjct: 20 VRYGRVPKRSRER---STEESSRVTTTD---ADQSDSETKQLAVYDVILTVSQAHHANCG 73
Query: 78 FTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRDVV 136
+T + ++R+ P + S +A + + L+ ++ L Q F+ +P+++ VV
Sbjct: 74 YTEEHTRNLVRKPVVVPPSSPADSEVA---SSTAEALEQERCWLWQQFAANITPSVQRVV 130
Query: 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS 196
EFAKR+PGF L DDQ+ L+K G FE+ L +A + + M+ +G + R +
Sbjct: 131 EFAKRVPGFCDLGQDDQLILIKIGFFEIWLSHVARL--TSNTVMMFDDGTTVTRQQLEIM 188
Query: 197 NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLM 256
+ S+ FA N L L+DTE+GLFS++V+++ RSG+ + + +E + KL L
Sbjct: 189 YDADFISSVMHFANTFNSLALNDTEVGLFSAVVLLTADRSGITDVKSIEHHQDKLIEALK 248
Query: 257 HVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ +NH + L + L+ LP+LR L HS L F+M
Sbjct: 249 VQVGRNHANEPQLFSSLLIKLPELRNLGAKHSAHLDWFRM 288
>gi|14994041|gb|AAK76395.1| Rev-Erb beta 1 [Danio rerio]
Length = 404
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 2/182 (1%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ + + E+ ++FS F P +R+VVEFAKRIPGF L DQV LLKAG
Sbjct: 223 LVCPMSASQFVDATRPGHEVWEEFSRSFIPAVREVVEFAKRIPGFQELSQHDQVNLLKAG 282
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR +FD Q ++ ++G D + S A L++ MF+F+E+L L L+D
Sbjct: 283 TFEVLMVRFVPLFDVQQRTVSFMSGRRYSVDLLRSMGAGELLNCMFEFSEKLAALQLNDE 342
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LFS++V++S RS + + VE ++ L L +++ +NH + ++ +L+ LPDL
Sbjct: 343 EMSLFSAVVLVSADRSAIEDVVGVEALQESLIRALRNLIMKNHSNESSVFTKLLLKLPDL 402
Query: 281 RT 282
RT
Sbjct: 403 RT 404
>gi|390334919|ref|XP_003724040.1| PREDICTED: uncharacterized protein LOC100890792 [Strongylocentrotus
purpuratus]
Length = 917
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 136/262 (51%), Gaps = 26/262 (9%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRR------------AREHPTY----TACPSTLAC 105
Q+++ V + + DTC +T +I+ + R R H Y + C
Sbjct: 633 QKIIHDVNKVYHDTCHYTFRRIKFLRERYFPELGEDEELNGRLHSKYDHDCSKCDPPPGF 692
Query: 106 P--------LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLL 157
P L+P+ P+ GQ+ + FS +F+ I +V F+K IPGF L +DQ+TL+
Sbjct: 693 PTGPIPPRELDPSEGPIDGQK-MWTFFSNKFTSQITRIVNFSKMIPGFKQLDREDQITLI 751
Query: 158 KAGVFEVLLVRLACMFDSQTNSMICLN-GEVLVRDSIHSSNARFLMDSMFDFAERLNGLH 216
K G+FEVL +R + + D TN++ G+ H L D +FDF +R+N +
Sbjct: 752 KTGLFEVLTIRFSTVVDVATNTVYWWTTGDTFSLVDAHKMPMGNLFDLLFDFGQRVNRMM 811
Query: 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISM 276
L D+E L S++V++S R GL+N++L+ ++ L L ++ NHP+ L A L++
Sbjct: 812 LDDSEYALMSAVVIMSADRPGLKNRKLIREVQLDLLKALQLEISDNHPDDDQLFARLLTT 871
Query: 277 LPDLRTLNQLHSEKLVAFQMTE 298
+P LR ++ H+ +L+ ++ +
Sbjct: 872 IPKLREISPEHTRRLMDLKIRQ 893
>gi|14994054|gb|AAK76401.1| Rev-Erb beta [Takifugu rubripes]
Length = 480
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP+N P P + QE+ ++FS F+P +++VV+FAKRIPGF L +DQV+LLKAG
Sbjct: 298 LVCPMNTSPYVGPNKSSQEIWEEFSMSFTPAVQEVVDFAKRIPGFRDLPKNDQVSLLKAG 357
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F++ ++ L+G+ D++ S A L+ SM +F+E+L L L
Sbjct: 358 TFEVLMVRFASLFNAAERTVTFLSGKRYSLDTLCSLGAGELLLSMCEFSEKLAALRLDSD 417
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP-EQMNLCAELISMLPD 279
E+ LF+++V++S RSG+++ VE ++ +L L +++ + H E +L+ LPD
Sbjct: 418 EMSLFAAVVLVSADRSGIQDLNAVEALQDQLIRALRNLIGEKHGDESATTFTKLLLKLPD 477
Query: 280 LRT 282
R+
Sbjct: 478 FRS 480
>gi|431895945|gb|ELK05363.1| Nuclear receptor ROR-alpha, partial [Pteropus alecto]
Length = 336
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 19/247 (7%)
Query: 51 EKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPN 110
+K LA + ++ + + ++HL+TC + ++++ + T L
Sbjct: 76 QKCLAVGMSRDEHLAQNISKSHLETCQYLREELQQI---------------TWQTFLQEE 120
Query: 111 SHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R
Sbjct: 121 IENYQSKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIR 180
Query: 169 LACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI LFS+
Sbjct: 181 MCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAF 239
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L H+
Sbjct: 240 VLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHT 298
Query: 289 EKLVAFQ 295
EKL+AF+
Sbjct: 299 EKLMAFK 305
>gi|389614469|dbj|BAM20282.1| nuclear hormone receptor E75B, partial [Papilio xuthus]
Length = 228
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 98/132 (74%), Gaps = 7/132 (5%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAEL+D R+L+ VVRAHLDTC FT D++
Sbjct: 98 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELEDAPRLLARVVRAHLDTCEFTRDRV 157
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP + LQ ++E FS+RF+ IR V++FA IP
Sbjct: 158 AAMRARARDCPTYSQ--PTLACPLNP-APELQSEKE----FSQRFAHVIRGVIDFAGLIP 210
Query: 144 GFSLLCHDDQVT 155
GF LL DD+ T
Sbjct: 211 GFQLLTQDDKFT 222
>gi|432104820|gb|ELK31337.1| Nuclear receptor ROR-alpha, partial [Myotis davidii]
Length = 336
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 19/247 (7%)
Query: 51 EKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPN 110
+K LA + ++ + + ++HL+TC + ++++ + T L
Sbjct: 76 QKCLAVGMSRDEHLAQNISKSHLETCQYLREELQQI---------------TWQTFLQEE 120
Query: 111 SHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R
Sbjct: 121 IENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIR 180
Query: 169 LACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI LFS+
Sbjct: 181 MCRAFDSQNNTVY-FDGKYAGPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAF 239
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L H+
Sbjct: 240 VLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHT 298
Query: 289 EKLVAFQ 295
EKL+AF+
Sbjct: 299 EKLMAFK 305
>gi|242010620|ref|XP_002426061.1| Nuclear hormone receptor E75, putative [Pediculus humanus corporis]
gi|212510079|gb|EEB13323.1| Nuclear hormone receptor E75, putative [Pediculus humanus corporis]
Length = 303
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 20/286 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQ----RMLSTVVRAHLDTCAFT 79
VR+GRVPKR + R + +QS + T A ++ D +Q ++ TV +AH C +T
Sbjct: 6 VRYGRVPKRSRER--STEEQSRVS--TSDAEQSDSDTKQLAVYDVILTVSQAHHANCGYT 61
Query: 80 ADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE---LLQDFSERFSPTIRDVV 136
+ ++R+ P ST P +S +QE L Q F+ +P+++ VV
Sbjct: 62 EEHTRNLVRKPITIPPLNGSSSTDG-PEVASSTAESLEQERIWLWQQFASHVTPSVQRVV 120
Query: 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLL---VRLACMFDSQTNSMICLNGEVLVRDSI 193
EFAKR+PGF L DDQ+ L+K G FE+ L R C +SM +G + + +
Sbjct: 121 EFAKRVPGFCDLSQDDQLILIKVGFFEIWLGHVSRQTC-----DSSMTFTDGTYITKQQM 175
Query: 194 HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
+ S+F FA N L L+DTE+GLFS++V++S R G+ + +++E+ + +L
Sbjct: 176 DLIYDPEFVSSLFHFAASFNALALNDTELGLFSAVVLLSADRPGVADIKVIEQHQDRLIE 235
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
L + +NH L + L+ LP+LR L HS L F++ Q
Sbjct: 236 ALKVQVGRNHASDPQLFSSLLMKLPELRNLGAKHSAHLDWFRINWQ 281
>gi|51235738|gb|AAT98634.1| orphan nuclear receptor E75D [Manduca sexta]
Length = 109
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 85/108 (78%), Gaps = 2/108 (1%)
Query: 2 MEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
M ++LPILK IL G +YHNAPVRFGRVPKREKARILAAMQQS+ ++ E+A AAELDD
Sbjct: 1 MGEDLPILKGILNGVVKYHNAPVRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDA 60
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
R+L+ VVRAHLDTC FT D++ M RAR+ PTY+ TLACPLNP
Sbjct: 61 PRLLARVVRAHLDTCEFTRDRVAAMRARARDCPTYSQ--PTLACPLNP 106
>gi|378705840|gb|AFC34772.1| RORalpha2 [Ctenopharyngodon idella]
Length = 468
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 136/254 (53%), Gaps = 24/254 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPS 101
TN + + AEL + + + ++H++TC + ++++ M +A E +Y P
Sbjct: 205 TNGETSPTVSMAEL---EHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESYQNKP- 260
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 261 ---------------REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS 305
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
EV+ VR+ FD Q N++ +G+ D S L+ S+F+F + L +HLS+ E
Sbjct: 306 LEVVFVRMCRAFDPQNNTVY-FDGKYAGPDVFKSLGCDDLISSVFEFGKNLRSMHLSEDE 364
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
I LFS+ V +S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR
Sbjct: 365 IALFSAFVSMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLR 423
Query: 282 TLNQLHSEKLVAFQ 295
L H+EKL AF+
Sbjct: 424 ALCSRHTEKLTAFK 437
>gi|444730961|gb|ELW71330.1| NMDA receptor-regulated protein 2 [Tupaia chinensis]
Length = 1270
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 19/239 (7%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ 118
D + + + ++HL+TC + ++++ + T L Q +Q
Sbjct: 146 DQSEHLAQNISKSHLETCQYLREELQQI---------------TWQTFLQEEIENYQNKQ 190
Query: 119 E--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
+ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDSQ
Sbjct: 191 REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQ 250
Query: 177 TNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
N+ + +G+ D S + +F+F + L +HL++ EI LFS+ V++S RS
Sbjct: 251 NNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRS 309
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L+ K +E+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 310 WLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFK 367
>gi|351698410|gb|EHB01329.1| Nuclear receptor ROR-alpha [Heterocephalus glaber]
Length = 571
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 135/253 (53%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 308 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 349
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L + Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 350 TFLQEETENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 409
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 410 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 468
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 469 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 527
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 528 LCGRHTEKLMAFK 540
>gi|297287011|ref|XP_001089921.2| PREDICTED: nuclear receptor subfamily 1 group D member 2 [Macaca
mulatta]
Length = 582
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVIS 232
E+ LF+++V++S
Sbjct: 502 EMSLFTAVVLVS 513
>gi|164414403|ref|NP_001103637.1| nuclear receptor ROR-alpha [Danio rerio]
gi|156720176|dbj|BAF76726.1| retinoid-related orphan receptor alpha 2 [Danio rerio]
Length = 468
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 136/254 (53%), Gaps = 24/254 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPS 101
TN + + AEL + + + ++H++TC + ++++ M +A E Y + P
Sbjct: 205 TNGETSPTVSMAEL---EHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVENYQSKP- 260
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
++ + Q + + + I+ VVEFAK I GF LC +DQ+ LLKAG
Sbjct: 261 ---------------REVMWQLCAIKITEAIQYVVEFAKHIDGFMELCQNDQIVLLKAGS 305
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
EV+ VR+ FD Q N++ +G+ D S L+ S+F+F + L +HLS+ E
Sbjct: 306 LEVVFVRMCRAFDPQNNTVY-FDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDE 364
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
I LFS+ V++S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR
Sbjct: 365 IALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLR 423
Query: 282 TLNQLHSEKLVAFQ 295
L H+EKL AF+
Sbjct: 424 ALCSRHTEKLTAFK 437
>gi|7305439|ref|NP_038674.1| nuclear receptor ROR-alpha [Mus musculus]
gi|1710637|sp|P51448.1|RORA_MOUSE RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|1289326|gb|AAC52513.1| ROR-alpha 1 [Mus musculus]
gi|148694214|gb|EDL26161.1| RAR-related orphan receptor alpha [Mus musculus]
Length = 523
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>gi|345795020|ref|XP_535503.3| PREDICTED: nuclear receptor ROR-alpha [Canis lupus familiaris]
Length = 523
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>gi|300797466|ref|NP_001179790.1| nuclear receptor ROR-alpha [Bos taurus]
gi|296483252|tpg|DAA25367.1| TPA: RAR-related orphan receptor A [Bos taurus]
Length = 523
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>gi|403274571|ref|XP_003929048.1| PREDICTED: nuclear receptor ROR-alpha [Saimiri boliviensis
boliviensis]
Length = 523
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>gi|19743903|ref|NP_599023.1| nuclear receptor ROR-alpha isoform a [Homo sapiens]
gi|114657409|ref|XP_001173408.1| PREDICTED: nuclear receptor ROR-alpha isoform 6 [Pan troglodytes]
gi|451564|gb|AAA62658.1| RORalpha1 [Homo sapiens]
gi|14250724|gb|AAH08831.1| RAR-related orphan receptor A [Homo sapiens]
Length = 523
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>gi|325495551|gb|ADZ17381.1| thyroid hormone nuclear receptor alpha [Homo sapiens]
Length = 467
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 136/252 (53%), Gaps = 21/252 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
L Q ++E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG E
Sbjct: 247 TFLQEEIENYQNKREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE 306
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 VVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIA 365
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L
Sbjct: 366 LFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRAL 424
Query: 284 NQLHSEKLVAFQ 295
H+EKL+AF+
Sbjct: 425 CGRHTEKLMAFK 436
>gi|327284516|ref|XP_003226983.1| PREDICTED: nuclear receptor ROR-alpha-like [Anolis carolinensis]
Length = 609
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 346 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 387
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 388 TFLQEEIENYQSKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 447
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 448 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 506
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 507 ALFSAFVLLSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 565
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 566 LCGRHTEKLMAFR 578
>gi|281347428|gb|EFB23012.1| hypothetical protein PANDA_012073 [Ailuropoda melanoleuca]
Length = 546
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 283 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 324
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 325 TFLQEEIESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 384
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 385 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 443
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 444 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 502
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 503 LCGRHTEKLMAFK 515
>gi|395822270|ref|XP_003784444.1| PREDICTED: nuclear receptor ROR-alpha [Otolemur garnettii]
Length = 523
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>gi|47214409|emb|CAG00250.1| unnamed protein product [Tetraodon nigroviridis]
Length = 588
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 91/130 (70%), Gaps = 2/130 (1%)
Query: 105 CPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
CP+N +++ P + QE+ ++FS F+P +R+VVEFAK+IPGF L DQV+LLKAG F
Sbjct: 290 CPMNMSAYVDPQKSGQEVWEEFSHSFTPAVREVVEFAKKIPGFRDLSQHDQVSLLKAGTF 349
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EVL+VR A +FD Q ++ L G D++ + A L++SMFDF+E+L L LS+ E+
Sbjct: 350 EVLVVRFASLFDVQNRTVTFLGGRKYSMDALRAMGAGDLLNSMFDFSEKLMSLGLSEEEM 409
Query: 223 GLFSSIVVIS 232
LF+++V++S
Sbjct: 410 SLFTAVVLVS 419
>gi|397515466|ref|XP_003827972.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pan paniscus]
Length = 525
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 262 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 303
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 304 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 363
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 364 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 422
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 423 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 481
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 482 LCGRHTEKLMAFK 494
>gi|47229684|emb|CAG06880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 18/249 (7%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACP-----------LNPNS 111
R+ ++++HL+TC +T ++++ ++ + + S + P +P
Sbjct: 353 RLAQNIIKSHLETCQYTTEELQQLVWQTHSYEELKVYQSKVRAPEPALQSLGLTWASPGP 412
Query: 112 H-----PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
H Q + L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+L
Sbjct: 413 HLSSWVCFQPRDVLWQQCAIQITHAIQYVVEFAKRISGFMELCQNDQILLLKSGCLEVVL 472
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
VR+ F+ N+++ G+ + L+ ++FDFA+ L L L++ EI LFS
Sbjct: 473 VRMCRAFNPLNNTVL-FEGKYGGMQMFKTLGCDELVSAVFDFAKSLCSLQLTEEEIALFS 531
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
+ V+IS R L V++++ K+ L H++ +NH ++ L A+LIS +P L L L
Sbjct: 532 AAVLISTDRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDTL-AKLISRIPTLSALCTL 590
Query: 287 HSEKLVAFQ 295
H+E+L AFQ
Sbjct: 591 HTEELQAFQ 599
>gi|426379299|ref|XP_004056338.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Gorilla gorilla
gorilla]
Length = 525
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 262 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 303
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 304 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 363
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 364 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 422
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 423 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 481
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 482 LCGRHTEKLMAFK 494
>gi|395746808|ref|XP_003778514.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pongo abelii]
Length = 525
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 262 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 303
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 304 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 363
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 364 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 422
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 423 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 481
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 482 LCGRHTEKLMAFK 494
>gi|332235835|ref|XP_003267110.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Nomascus
leucogenys]
Length = 525
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 262 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 303
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 304 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 363
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 364 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 422
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 423 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 481
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 482 LCGRHTEKLMAFK 494
>gi|4506577|ref|NP_002934.1| nuclear receptor ROR-alpha isoform c [Homo sapiens]
gi|451568|gb|AAA62660.1| RORalpha3 [Homo sapiens]
gi|119598001|gb|EAW77595.1| RAR-related orphan receptor A, isoform CRA_c [Homo sapiens]
Length = 548
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 285 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 326
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 327 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 386
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 387 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 445
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 446 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 504
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 505 LCGRHTEKLMAFK 517
>gi|395819239|ref|XP_003783005.1| PREDICTED: nuclear receptor ROR-beta [Otolemur garnettii]
Length = 459
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ S + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKSLGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|410961130|ref|XP_003987138.1| PREDICTED: nuclear receptor ROR-alpha [Felis catus]
Length = 493
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 230 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 271
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 272 TFLQEEIESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 331
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 332 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 390
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 391 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 449
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 450 LCGRHTEKLMAFK 462
>gi|395746804|ref|XP_002825560.2| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pongo abelii]
Length = 524
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 261 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 302
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 303 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 362
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 363 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 421
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 422 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 480
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 481 LCGRHTEKLMAFK 493
>gi|19743901|ref|NP_599022.1| nuclear receptor ROR-alpha isoform b [Homo sapiens]
gi|548814|sp|P35398.1|RORA_HUMAN RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|451566|gb|AAA62659.1| RORalpha2 [Homo sapiens]
gi|119598002|gb|EAW77596.1| RAR-related orphan receptor A, isoform CRA_d [Homo sapiens]
Length = 556
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 293 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 334
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 335 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 394
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 395 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 453
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 454 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 512
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 513 LCGRHTEKLMAFK 525
>gi|397515462|ref|XP_003827970.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pan paniscus]
Length = 524
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 261 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 302
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 303 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 362
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 363 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 421
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 422 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 480
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 481 LCGRHTEKLMAFK 493
>gi|440899103|gb|ELR50468.1| Nuclear receptor ROR-alpha, partial [Bos grunniens mutus]
Length = 468
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|119597999|gb|EAW77593.1| RAR-related orphan receptor A, isoform CRA_a [Homo sapiens]
Length = 467
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 204 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 245
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 246 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 305
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 306 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 364
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 365 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 423
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 424 LCGRHTEKLMAFK 436
>gi|402874468|ref|XP_003901059.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Papio anubis]
Length = 515
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 252 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 293
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 294 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 353
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 354 EVVFIRMCRAFDSQNNTVY-FDGKYASPDIFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 412
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 413 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 471
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 472 LCGRHTEKLMAFK 484
>gi|726301|gb|AAA91122.1| steroid receptor, partial [Mus cookii]
Length = 394
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 131 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 172
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 173 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 232
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 233 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 291
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 292 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 350
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 351 LCGRHTEKLMAFK 363
>gi|410049251|ref|XP_003952714.1| PREDICTED: nuclear receptor ROR-alpha [Pan troglodytes]
Length = 386
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL + + + ++HL+TC + ++++ + T
Sbjct: 123 TNGETSPTVSMAEL---EHLAQNISKSHLETCQYLREELQQI---------------TWQ 164
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 165 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 224
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 225 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 283
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 284 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 342
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 343 LCGRHTEKLMAFK 355
>gi|354503278|ref|XP_003513708.1| PREDICTED: nuclear receptor ROR-alpha, partial [Cricetulus griseus]
Length = 473
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 210 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 251
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 252 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 311
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 312 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 370
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 371 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 429
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 430 LCGRHTEKLMAFK 442
>gi|112821692|ref|NP_666207.3| nuclear receptor ROR-beta isoform 2 [Mus musculus]
gi|124028631|sp|Q8R1B8.3|RORB_MOUSE RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|110589525|gb|ABG77270.1| retinoid-related orphan receptor beta 2 isoform [Mus musculus]
Length = 470
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 221 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 264
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 265 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 324
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 325 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 383
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 384 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 442
Query: 296 MT 297
+
Sbjct: 443 QS 444
>gi|426234133|ref|XP_004011054.1| PREDICTED: nuclear receptor ROR-alpha [Ovis aries]
Length = 780
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 517 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 558
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 559 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 618
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 619 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 677
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 678 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 736
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 737 LCGRHTEKLMAFK 749
>gi|148709623|gb|EDL41569.1| RAR-related orphan receptor beta, isoform CRA_a [Mus musculus]
Length = 474
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 225 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 268
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 269 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 328
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 329 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 387
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 388 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 446
Query: 296 MT 297
+
Sbjct: 447 QS 448
>gi|397515460|ref|XP_003827969.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pan paniscus]
Length = 516
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 253 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 294
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 295 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 354
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 355 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 413
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 414 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 472
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 473 LCGRHTEKLMAFK 485
>gi|395532574|ref|XP_003768345.1| PREDICTED: nuclear receptor subfamily 1 group D member 1
[Sarcophilus harrisii]
Length = 598
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 419 LACPMNMYPHGRSGRSVQEIWEDFSMSFTPAVREVVEFAKHIPGFCDLSQHDQVTLLKAG 478
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 479 TFEVLMVRFASLFNVKEQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 538
Query: 221 EIGLFSSIVVISPSRSGLRNKEL 243
E+GLF+++V++S R LR + L
Sbjct: 539 ELGLFTAVVLVSAGRPRLRPQGL 561
>gi|395746802|ref|XP_003778512.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pongo abelii]
Length = 516
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 253 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 294
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 295 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 354
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 355 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 413
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 414 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 472
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 473 LCGRHTEKLMAFK 485
>gi|216409696|dbj|BAH02285.1| retinoid-related orphan receptor alpha [Homo sapiens]
Length = 523
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+E+L+AF+
Sbjct: 480 LCGRHTERLMAFK 492
>gi|293344662|ref|XP_002725756.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Rattus norvegicus]
gi|293356460|ref|XP_002728915.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 470
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 221 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 264
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 265 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 324
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 325 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 383
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 384 AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 442
Query: 296 MT 297
+
Sbjct: 443 QS 444
>gi|149062564|gb|EDM12987.1| RAR-related orphan receptor beta (predicted) [Rattus norvegicus]
Length = 452
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 203 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 246
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 247 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 306
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 307 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 365
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 366 AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 424
Query: 296 MT 297
+
Sbjct: 425 QS 426
>gi|1869971|emb|CAB05396.1| nuclear orphan receptor/transcription factor [Mus musculus]
gi|74143434|dbj|BAE28797.1| unnamed protein product [Mus musculus]
gi|74214884|dbj|BAE33451.1| unnamed protein product [Mus musculus]
Length = 467
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 204 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 245
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 246 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 305
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 306 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 364
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 365 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 423
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 424 LCGRHTEKLMAFK 436
>gi|133777005|gb|AAH03757.2| Rora protein [Mus musculus]
Length = 460
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 197 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 238
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 239 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 298
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 299 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 357
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 358 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 416
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 417 LCGRHTEKLMAFK 429
>gi|410978155|ref|XP_003995462.1| PREDICTED: nuclear receptor ROR-beta [Felis catus]
Length = 459
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTTEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|114625040|ref|XP_528326.2| PREDICTED: nuclear receptor ROR-beta isoform 2 [Pan troglodytes]
gi|403256470|ref|XP_003920899.1| PREDICTED: nuclear receptor ROR-beta [Saimiri boliviensis
boliviensis]
gi|426362025|ref|XP_004048183.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Gorilla gorilla
gorilla]
gi|124028630|sp|Q92753.3|RORB_HUMAN RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|355567837|gb|EHH24178.1| Retinoid-related orphan receptor-beta [Macaca mulatta]
gi|355753418|gb|EHH57464.1| Retinoid-related orphan receptor-beta [Macaca fascicularis]
Length = 470
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 225 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 271
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 272 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 330
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 331 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 390
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 391 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
>gi|19743905|ref|NP_599024.1| nuclear receptor ROR-alpha isoform d [Homo sapiens]
gi|335279592|ref|XP_001928189.3| PREDICTED: nuclear receptor ROR-alpha [Sus scrofa]
gi|71680298|gb|AAI00990.1| RAR-related orphan receptor A [Homo sapiens]
gi|71681741|gb|AAI00989.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533311|gb|AAI00988.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533486|gb|AAI00991.1| RAR-related orphan receptor A [Homo sapiens]
gi|119598000|gb|EAW77594.1| RAR-related orphan receptor A, isoform CRA_b [Homo sapiens]
gi|325495447|gb|ADZ17329.1| thyroid hormone nuclear receptor alpha variant 4 [Homo sapiens]
gi|410218696|gb|JAA06567.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410255712|gb|JAA15823.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410306084|gb|JAA31642.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410352249|gb|JAA42728.1| RAR-related orphan receptor A [Pan troglodytes]
Length = 468
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|296802130|gb|ADH51563.1| retinoic acid-related orphan receptor alpha isoform 1 [Capra
hircus]
Length = 459
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 196 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 237
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 238 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 297
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 298 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 356
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 357 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 415
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 416 LCGRHTEKLMAFK 428
>gi|348572976|ref|XP_003472268.1| PREDICTED: nuclear receptor ROR-beta-like [Cavia porcellus]
Length = 470
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 221 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 264
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 265 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 324
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 325 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 383
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 384 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 442
Query: 296 MT 297
+
Sbjct: 443 QS 444
>gi|124028632|sp|P45446.3|RORB_RAT RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
Length = 470
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 221 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 264
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 265 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 324
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 325 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 383
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 384 AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 442
Query: 296 MT 297
+
Sbjct: 443 QS 444
>gi|351714484|gb|EHB17403.1| Nuclear receptor ROR-beta [Heterocephalus glaber]
Length = 510
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 261 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEVKAYQS-------------K 304
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 305 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 364
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 365 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 423
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 424 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKMPTITAVCNLHGEKLQVFK 482
Query: 296 MT 297
+
Sbjct: 483 QS 484
>gi|400974222|ref|NP_001257887.1| nuclear receptor ROR-beta [Rattus norvegicus]
gi|109463688|ref|XP_001079696.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 459
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 210 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 253
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 254 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 313
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 314 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 372
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 373 AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 431
Query: 296 MT 297
+
Sbjct: 432 QS 433
>gi|300675596|gb|ADK26460.1| retinoic acid-related orphan receptor alpha isoform 2 [Capra
hircus]
Length = 468
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|397515464|ref|XP_003827971.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pan paniscus]
gi|426379297|ref|XP_004056337.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Gorilla gorilla
gorilla]
Length = 493
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 230 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 271
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 272 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 331
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 332 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 390
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 391 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 449
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 450 LCGRHTEKLMAFK 462
>gi|37194675|gb|AAH58269.1| Rorb protein, partial [Mus musculus]
Length = 462
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 213 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 256
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 257 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 316
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 317 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 375
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 376 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 434
Query: 296 MT 297
+
Sbjct: 435 QS 436
>gi|332843955|ref|XP_001173382.2| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pan troglodytes]
Length = 460
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 197 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 238
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 239 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 298
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 299 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 357
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 358 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 416
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 417 LCGRHTEKLMAFK 429
>gi|349096|gb|AAA42095.1| transcription factor, partial [Rattus norvegicus]
Length = 483
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 234 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 277
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 278 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 337
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 338 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 396
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 397 AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 455
Query: 296 MT 297
+
Sbjct: 456 QS 457
>gi|112180520|gb|AAH24842.2| RAR-related orphan receptor beta [Mus musculus]
Length = 385
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 136 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 179
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 180 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 239
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 240 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 298
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 299 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 357
Query: 296 MT 297
+
Sbjct: 358 QS 359
>gi|301775172|ref|XP_002923008.1| PREDICTED: nuclear receptor ROR-alpha-like [Ailuropoda melanoleuca]
Length = 509
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 246 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 287
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 288 TFLQEEIESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 347
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 348 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 406
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 407 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 465
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 466 LCGRHTEKLMAFK 478
>gi|440912616|gb|ELR62171.1| Nuclear receptor ROR-beta, partial [Bos grunniens mutus]
Length = 467
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 218 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 261
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 262 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 321
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 322 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 380
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 381 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 439
Query: 296 MT 297
+
Sbjct: 440 QS 441
>gi|112821700|ref|NP_001036819.1| nuclear receptor ROR-beta isoform 1 [Mus musculus]
gi|110589523|gb|ABG77269.1| retinoid-related orphan receptor beta 1 isoform [Mus musculus]
Length = 459
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 210 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 253
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 254 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 313
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 314 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 372
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 373 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 431
Query: 296 MT 297
+
Sbjct: 432 QS 433
>gi|395746806|ref|XP_003778513.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pongo abelii]
Length = 493
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 230 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 271
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 272 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 331
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 332 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 390
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 391 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 449
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 450 LCGRHTEKLMAFK 462
>gi|148709624|gb|EDL41570.1| RAR-related orphan receptor beta, isoform CRA_b [Mus musculus]
Length = 367
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 118 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 161
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 162 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 221
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 222 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 280
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 281 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 339
Query: 296 MT 297
+
Sbjct: 340 QS 341
>gi|441616023|ref|XP_004088336.1| PREDICTED: nuclear receptor ROR-alpha [Nomascus leucogenys]
Length = 493
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 230 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 271
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 272 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 331
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 332 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 390
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 391 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 449
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 450 LCGRHTEKLMAFK 462
>gi|344271210|ref|XP_003407434.1| PREDICTED: nuclear receptor ROR-beta, partial [Loxodonta africana]
Length = 458
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 213 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 259
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 260 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 318
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 319 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 378
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 379 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 432
>gi|410049253|ref|XP_003952715.1| PREDICTED: nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 230 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 271
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 272 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 331
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 332 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 390
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 391 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 449
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 450 LCGRHTEKLMAFK 462
>gi|402874466|ref|XP_003901058.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Papio anubis]
Length = 468
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPDIFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|94467591|dbj|BAE93688.1| RAR related orphan receptor beta [Mus musculus]
Length = 459
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 131/240 (54%), Gaps = 15/240 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
L + R+ ++++HL+TC +T +++ + + + A S + +
Sbjct: 209 LSEIDRIAQNIIKSHLETCQYTMEELHHLAWQTHTYEEIKAYQS-------------KSR 255
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 256 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 315
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 316 NTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW 374
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 375 LIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|348241|gb|AAA02963.1| transcription factor [Homo sapiens]
Length = 468
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRVCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GMLTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|345323218|ref|XP_001506671.2| PREDICTED: nuclear receptor ROR-beta [Ornithorhynchus anatinus]
Length = 688
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T IE + + A + TY + + ++ L Q
Sbjct: 443 RIAQNIIKSHLETCQYT---IEELHQLAWQTHTYEEI----------KVYQNKTREALWQ 489
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 490 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 548
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 549 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 608
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + L LH EKL F+ +
Sbjct: 609 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITALCNLHGEKLQVFKQS 662
>gi|297296572|ref|XP_001100971.2| PREDICTED: nuclear receptor ROR-alpha-like isoform 2 [Macaca
mulatta]
Length = 468
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPDIFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|431898686|gb|ELK07066.1| Nuclear receptor ROR-beta, partial [Pteropus alecto]
Length = 460
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 215 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 261
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 262 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 320
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 321 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 380
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 381 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 434
>gi|354502106|ref|XP_003513128.1| PREDICTED: nuclear receptor ROR-beta [Cricetulus griseus]
Length = 385
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 140 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 186
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 187 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 245
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 246 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 305
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 306 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 359
>gi|402874470|ref|XP_003901060.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Papio anubis]
Length = 524
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 261 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 302
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 303 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 362
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 363 EVVFIRMCRAFDSQNNTVY-FDGKYASPDIFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 421
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 422 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 480
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 481 LCGRHTEKLMAFK 493
>gi|332236552|ref|XP_003267464.1| PREDICTED: nuclear receptor ROR-beta [Nomascus leucogenys]
Length = 459
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|73946789|ref|XP_541280.2| PREDICTED: nuclear receptor ROR-beta [Canis lupus familiaris]
Length = 459
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 210 GEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 253
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 254 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 313
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 314 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 372
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 373 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 431
Query: 296 MT 297
+
Sbjct: 432 QS 433
>gi|300798568|ref|NP_001179587.1| nuclear receptor ROR-beta [Bos taurus]
gi|296484753|tpg|DAA26868.1| TPA: RAR-related orphan receptor B [Bos taurus]
Length = 459
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 210 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 253
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 254 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 313
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 314 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 372
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 373 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 431
Query: 296 MT 297
+
Sbjct: 432 QS 433
>gi|363737943|ref|XP_413763.3| PREDICTED: nuclear receptor ROR-alpha [Gallus gallus]
Length = 524
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 261 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 302
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 303 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 362
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 363 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 421
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 422 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 480
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 481 LCGRHTEKLIAFK 493
>gi|1619294|emb|CAA69929.1| nuclear orphan receptor ROR-beta [Homo sapiens]
Length = 459
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|344293479|ref|XP_003418450.1| PREDICTED: nuclear receptor ROR-alpha-like [Loxodonta africana]
Length = 496
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 233 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 274
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 275 TFLQEEIENYQTKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 334
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 335 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 393
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 394 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 452
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 453 LCGRHTEKLMAFK 465
>gi|334314429|ref|XP_001374269.2| PREDICTED: nuclear receptor ROR-alpha [Monodelphis domestica]
Length = 528
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 265 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 306
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 307 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 366
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 367 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 425
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 426 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 484
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 485 LCGRHTEKLMAFK 497
>gi|19743907|ref|NP_008845.2| nuclear receptor ROR-beta [Homo sapiens]
gi|386781838|ref|NP_001247680.1| nuclear receptor ROR-beta [Macaca mulatta]
gi|114625038|ref|XP_001144112.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Pan troglodytes]
gi|397503245|ref|XP_003822240.1| PREDICTED: nuclear receptor ROR-beta [Pan paniscus]
gi|402897652|ref|XP_003911863.1| PREDICTED: nuclear receptor ROR-beta [Papio anubis]
gi|426362023|ref|XP_004048182.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Gorilla gorilla
gorilla]
gi|62022574|gb|AAH51830.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739507|gb|AAH93774.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739746|gb|AAH93772.1| RAR-related orphan receptor B [Homo sapiens]
gi|119582956|gb|EAW62552.1| RAR-related orphan receptor B [Homo sapiens]
gi|167773493|gb|ABZ92181.1| RAR-related orphan receptor B [synthetic construct]
gi|189066675|dbj|BAG36222.1| unnamed protein product [Homo sapiens]
gi|307685949|dbj|BAJ20905.1| RAR-related orphan receptor B [synthetic construct]
gi|325495575|gb|ADZ17393.1| RAR-related orphan receptor beta [Homo sapiens]
gi|380783487|gb|AFE63619.1| nuclear receptor ROR-beta [Macaca mulatta]
Length = 459
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|194224754|ref|XP_001488198.2| PREDICTED: nuclear receptor ROR-beta [Equus caballus]
Length = 459
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELRQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|296213374|ref|XP_002753242.1| PREDICTED: nuclear receptor ROR-alpha [Callithrix jacchus]
Length = 468
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPDIFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E L +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGVL-TKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|26336086|dbj|BAC31728.1| unnamed protein product [Mus musculus]
Length = 316
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 53 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 94
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 95 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 154
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 155 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 213
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 214 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 272
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 273 LCGRHTEKLMAFK 285
>gi|296189722|ref|XP_002742890.1| PREDICTED: nuclear receptor ROR-beta [Callithrix jacchus]
Length = 459
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|395514963|ref|XP_003761678.1| PREDICTED: nuclear receptor ROR-beta [Sarcophilus harrisii]
Length = 487
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 242 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KTREALWQ 288
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 289 QCAVQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 347
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 348 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 407
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 408 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 461
>gi|193211376|ref|NP_001123209.1| nuclear receptor ROR-beta [Ovis aries]
gi|152940827|gb|ABS44878.1| retinoid-related orphan receptor beta [Ovis aries]
Length = 459
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 210 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 253
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 254 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 313
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 314 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 372
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 373 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 431
Query: 296 MT 297
+
Sbjct: 432 QS 433
>gi|2570170|dbj|BAA22970.1| mROR4 [Mus caroli]
gi|9653297|gb|AAB46801.2| orphan nuclear receptor [Mus sp.]
Length = 466
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 135/252 (53%), Gaps = 21/252 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 204 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 245
Query: 105 CPLNPNSHPLQGQQELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
L Q ++E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG E
Sbjct: 246 TFLQEEIENYQNKREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLE 305
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 306 VVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIA 364
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L
Sbjct: 365 LFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRAL 423
Query: 284 NQLHSEKLVAFQ 295
H+E L+AF+
Sbjct: 424 CGRHTENLMAFK 435
>gi|166797033|gb|AAI59204.1| Rorab protein [Danio rerio]
Length = 492
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 133/239 (55%), Gaps = 19/239 (7%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ--G 116
DD + + + ++HL+TC + ++++P S L N Q
Sbjct: 222 DDLEHLSENICKSHLETCQYLREELQP---------------SNWQTVLQSNLEAYQKKS 266
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q+++ Q + + + ++ VVEFAKRI GF LC +DQ+ LLKAG EV+ VR+ ++SQ
Sbjct: 267 QEDMWQLCAVKVTEAVQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAYNSQ 326
Query: 177 TNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
N++ + + + + L+ S+F+FA+ LN L LS+ EIGLFS+ V++S RS
Sbjct: 327 NNTVF-FDSKYAGPEVFKALGCDDLISSVFEFAKSLNSLQLSEDEIGLFSAYVLMSADRS 385
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L+ K VE+++ K++ L ++L +N ++ + +L+ + +R L + H EKL AF+
Sbjct: 386 WLQEKTRVEKLQQKIKIALQNLLQKNKRDE-GILTKLVCKVSTVRMLCRRHMEKLSAFR 443
>gi|41055082|ref|NP_957361.1| RAR-related orphan receptor A, paralog b [Danio rerio]
gi|29881662|gb|AAH51158.1| RAR-related orphan receptor A, paralog b [Danio rerio]
Length = 474
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 133/239 (55%), Gaps = 19/239 (7%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ--G 116
DD + + + ++HL+TC + ++++P S L N Q
Sbjct: 222 DDLEHLSENICKSHLETCQYLREELQP---------------SNWQTVLQSNLEAYQKKS 266
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q+++ Q + + + ++ VVEFAKRI GF LC +DQ+ LLKAG EV+ VR+ ++SQ
Sbjct: 267 QEDMWQLCAVKVTEAVQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAYNSQ 326
Query: 177 TNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
N++ + + + + L+ S+F+FA+ LN L LS+ EIGLFS+ V++S RS
Sbjct: 327 NNTVF-FDSKYAGPEVFKALGCDDLISSVFEFAKSLNSLQLSEDEIGLFSAYVLMSADRS 385
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L+ K VE+++ K++ L ++L +N ++ + +L+ + +R L + H EKL AF+
Sbjct: 386 WLQEKTRVEKLQQKIKIALQNLLQKNQRDE-GILTKLVCKVSTVRMLCRHHMEKLSAFR 443
>gi|432874724|ref|XP_004072561.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 472
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 24/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREH---PTYTACPSTLACPLNPNSH 112
ELD R+ ++++HL+TC +T ++++ + + + Y + P +
Sbjct: 220 GELD---RIAQNIIKSHLETCQYTTEELQQLAWQTHSYEEIKMYQSKPRDV--------- 267
Query: 113 PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM 172
L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+
Sbjct: 268 -------LWQQCAIQITHAIQYVVEFAKRISGFMELCQNDQILLLKSGCLEVVLVRMCRA 320
Query: 173 FDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
F+ N+++ G+ S L+ ++FDFA+ L L L++ EI LFS+ V+IS
Sbjct: 321 FNPLNNTVL-FEGKYGGMQMFKSLGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLIS 379
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
R L V++++ K+ L H++ +NH ++ L A+LIS +P L L LH+E+L
Sbjct: 380 TDRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDAL-AKLISRIPTLSALCTLHTEELQ 438
Query: 293 AFQ 295
AFQ
Sbjct: 439 AFQ 441
>gi|224062295|ref|XP_002195185.1| PREDICTED: nuclear receptor ROR-alpha [Taeniopygia guttata]
Length = 524
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 261 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 302
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 303 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 362
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 363 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 421
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 422 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 480
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 481 LCGRHTEKLMAFK 493
>gi|194206592|ref|XP_001918176.1| PREDICTED: nuclear receptor ROR-alpha-like [Equus caballus]
Length = 839
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 576 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 617
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 618 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 677
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 678 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 736
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 737 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 795
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 796 LCGRHTEKLMAFK 808
>gi|47229543|emb|CAG06739.1| unnamed protein product [Tetraodon nigroviridis]
Length = 720
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 102 TLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
LACPLN P + + QE+ FS+ F+P +R+VVEFAK IPGF L DQV LLK+
Sbjct: 495 VLACPLNACPVAPASRSSQEVWDSFSQCFTPAVREVVEFAKSIPGFQSLSQHDQVMLLKS 554
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G F+VL+VR +FD++ ++ LNG+ S+ + L+D+MFDF+E+L + L
Sbjct: 555 GTFQVLMVRFCSLFDAKERAVTFLNGQTYSLASLRALGMGSLLDAMFDFSEKLGSMGLEP 614
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENML 255
E+ LF ++V++S RSG+ + VE+++ EN++
Sbjct: 615 DEMALFMAVVLVSADRSGIVDVGAVEQLQ---ENLI 647
>gi|37926882|pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 15/233 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 14 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 60
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 61 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 119
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 120 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPR 179
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 180 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 231
>gi|345306534|ref|XP_001510767.2| PREDICTED: nuclear receptor ROR-alpha-like [Ornithorhynchus
anatinus]
Length = 657
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 394 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 435
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 436 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 495
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 496 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 554
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 555 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 613
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 614 LCGRHTEKLMAFK 626
>gi|348555499|ref|XP_003463561.1| PREDICTED: nuclear receptor ROR-alpha [Cavia porcellus]
Length = 478
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 215 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 256
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 257 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 316
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 317 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 375
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 376 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 434
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 435 LCGRHTEKLMAFK 447
>gi|130490232|ref|NP_001076325.1| nuclear receptor ROR-beta [Danio rerio]
gi|126508455|gb|ABO15413.1| retinoid-related orphan receptor b [Danio rerio]
Length = 466
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 132/240 (55%), Gaps = 18/240 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
ELD R+ ++++HL+TC +TA++++ + + + S +
Sbjct: 216 GELD---RIAQNIIKSHLETCQYTAEELQQLAWQTHSYEEVKMYQS-------------K 259
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 260 TRDVLWQQCAIQVTHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 319
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + L+ ++FDFA+ L L L++ EI LFS+ V+IS R
Sbjct: 320 LNNTVL-FEGKYGGMQIFKTLGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLISTDR 378
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L V++++ K+ L H++ +NH ++ L A+LIS +P L L LH+E+L AFQ
Sbjct: 379 PWLMEPRKVQKLQEKIYFALQHIMQKNHLDEDAL-AKLISRIPTLSALCTLHTEELQAFQ 437
>gi|313225480|emb|CBY06954.1| unnamed protein product [Oikopleura dioica]
Length = 520
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 152/289 (52%), Gaps = 16/289 (5%)
Query: 23 PVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADK 82
V++GR+PK+ K++++ ++ + + A L EQ + + + +AH + T
Sbjct: 194 AVKYGRIPKKIKSQMIQNRKEQMIAEKMKTFTEATLGAEQ-IANQLHKAHAASFDLTQKV 252
Query: 83 I-----EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVE 137
+ + R AR + Q++ QDFS++FSP +R+VV+
Sbjct: 253 VFVGSTAVVSRNARRMHAKQGILRIFTGDERQFPLGFEYAQQIWQDFSDQFSPAVREVVD 312
Query: 138 FAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS- 196
FA R+ F L DDQV L+K+G FEV++ R A ++D QT +++ +G+ ++ + +
Sbjct: 313 FATRLSSFRALDQDDQVQLMKSGAFEVIITRFASLYDPQTRTLVFSDGKRYTKEDLLDTV 372
Query: 197 -NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENML 255
N L+D+++++A RL L L+ T++ +FS+I +IS R+GL +E+++ +L L
Sbjct: 373 QNVETLVDALYEYARRLCELRLTQTQLAIFSAIALISADRAGLSYTNDIEQLQNQLLRAL 432
Query: 256 -MHVLNQNHPEQMNLCA----ELISMLP---DLRTLNQLHSEKLVAFQM 296
M+++ + Q N E + +L DLR LN HSEKL Q+
Sbjct: 433 NMNIIVEEQKMQTNSAKIRFYETLKLLKGNFDLRQLNYKHSEKLTLMQL 481
>gi|291402905|ref|XP_002718250.1| PREDICTED: RAR-related orphan receptor A [Oryctolagus cuniculus]
Length = 633
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 370 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 411
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 412 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 471
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ NS+ +G+ + S + +F+F + L +HL++ EI
Sbjct: 472 EVVFIRMCRAFDSQNNSVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 530
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 531 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 589
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 590 LCGRHTEKLMAFK 602
>gi|301621480|ref|XP_002940077.1| PREDICTED: nuclear receptor ROR-beta-like [Xenopus (Silurana)
tropicalis]
Length = 458
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T D++ + A + TY + +
Sbjct: 209 SEID---RVAQNIIKSHLETCQYTVDELHQL---AWQTHTYE----------EIKIYQNK 252
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV++VR+ F+
Sbjct: 253 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVIVRMCRAFNP 312
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ S + ++ FDFA+ L L L++ EI LFS+ V+ISP R
Sbjct: 313 LNNTVL-FEGKYGGMQMFKSLGSDDFVNEAFDFAKSLCSLQLTEEEIALFSAAVLISPER 371
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L V++++ ++ L HV+ +NH + L A+LI+ +P++ L LH EKL F+
Sbjct: 372 PWLIEPRKVQKLQERIYFALQHVIQKNHLDDETL-AKLIAKIPNITALCNLHGEKLQVFK 430
Query: 296 MT 297
T
Sbjct: 431 QT 432
>gi|417402806|gb|JAA48237.1| Putative nuclear receptor [Desmodus rotundus]
Length = 565
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 414 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 473
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+L+ L L++
Sbjct: 474 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELSAMGMGDLLNAMFDFSEKLSSLALTEE 533
Query: 221 EIGLFSSIVVISPSRSGLR 239
E+GLF+++V++S RS R
Sbjct: 534 ELGLFTAVVLVSAGRSSFR 552
>gi|291383385|ref|XP_002708255.1| PREDICTED: RAR-related orphan receptor B [Oryctolagus cuniculus]
Length = 459
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + + A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDD-EILAKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|378705838|gb|AFC34771.1| RORalpha1 [Ctenopharyngodon idella]
Length = 474
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 136/236 (57%), Gaps = 15/236 (6%)
Query: 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE 119
D + + + ++HL+TC + ++++P + + L L+ +H + Q++
Sbjct: 223 DLEHLSENICKSHLETCQYLREELQP-----------SNWQTVLQTDLD--AHQKKSQED 269
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+ Q + + + ++ VVEFAKRI GF LC +DQ+ LLKAG EV+ VR+ ++SQ N+
Sbjct: 270 MWQLCAVKVTEAVQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAYNSQNNT 329
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ + + + + L+ S+F+FA+ LN L LS+ EIGLFS+ V++S RS L+
Sbjct: 330 VY-FDSKYAGPEVFKALGCDDLISSVFEFAKSLNSLQLSEDEIGLFSAYVLMSADRSWLQ 388
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
K VE+++ K++ L ++L +N + + + +L+ + +R L + H EKL AF+
Sbjct: 389 EKTRVEKLQQKIKIALQNLLQKNQRD-VGILTKLVCKVSTVRMLCRRHMEKLSAFR 443
>gi|216409698|dbj|BAH02286.1| retinoid-related orphan receptor beta [Homo sapiens]
Length = 459
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 128/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKTYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|20664022|pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 15/233 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 14 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 60
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 61 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 119
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 120 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPR 179
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 180 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 231
>gi|327263554|ref|XP_003216584.1| PREDICTED: nuclear receptor ROR-beta-like [Anolis carolinensis]
Length = 540
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 139/258 (53%), Gaps = 23/258 (8%)
Query: 45 TNTKCTEKALA-----AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTAC 99
T + C LA E+D R+ ++++HL+TC +T +++ + A + TY
Sbjct: 275 TYSSCNNGQLAPGITMTEID---RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYE-- 326
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
+ + ++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+
Sbjct: 327 --------EIKVYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKS 378
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219
G EV+LVR+ F+ N+++ G+ + + L++ F+FA+ L L L++
Sbjct: 379 GCLEVVLVRMCRAFNPLNNTVL-FEGKYGGMQMFKALGSDDLVNEAFEFAKNLCSLQLTE 437
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
EI LFSS V+ISP R+ L V++++ K+ L HV+++NH + L A+L++ +P
Sbjct: 438 EEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIHKNHLDDETL-AKLVAKIPT 496
Query: 280 LRTLNQLHSEKLVAFQMT 297
+ L LH EKL F+ +
Sbjct: 497 ITALCNLHGEKLQVFKQS 514
>gi|326926497|ref|XP_003209436.1| PREDICTED: nuclear receptor ROR-alpha-like [Meleagris gallopavo]
Length = 543
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 280 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 321
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 322 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 381
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 382 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 440
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 441 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 499
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 500 LCGRHTEKLIAFK 512
>gi|27574131|pdb|1N83|A Chain A, Crystal Structure Of The Complex Between The Orphan
Nuclear Hormone Receptor Ror(Alpha)-Lbd And Cholesterol
gi|46015638|pdb|1S0X|A Chain A, Crystal Structure Of The Human Roralpha Ligand Binding
Domain In Complex With Cholesterol Sulfate At 2.2a
Length = 270
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 19/230 (8%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE--LLQDFS 125
+ ++HL+TC + ++++ + T L Q +Q + Q +
Sbjct: 27 ISKSHLETCQYLREELQQI---------------TWQTFLQEEIENYQNKQREVMWQLCA 71
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
+ + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDSQ N+ + +G
Sbjct: 72 IKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNT-VYFDG 130
Query: 186 EVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ D S + +F+F + L +HL++ EI LFS+ V++S RS L+ K +E
Sbjct: 131 KYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIE 190
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 191 KLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFK 239
>gi|301778497|ref|XP_002924666.1| PREDICTED: nuclear receptor ROR-beta-like [Ailuropoda melanoleuca]
Length = 478
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY + + ++ L Q
Sbjct: 233 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYE----------EIKVYQSKSREALWQ 279
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 280 QCAIQVTHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 338
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 339 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 398
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 399 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 452
>gi|1039484|gb|AAB34983.1| hormone receptor 2 [Malacosoma disstria]
Length = 166
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 94/130 (72%), Gaps = 8/130 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQ ST ++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 44 VRFGRVPKREKARILAAMQSST-SRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 102
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 103 AAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 155
Query: 144 GFSLLCHDDQ 153
GF LL DD+
Sbjct: 156 GFQLLTQDDK 165
>gi|344244424|gb|EGW00528.1| Nuclear receptor ROR-beta [Cricetulus griseus]
Length = 440
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 15/229 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 150 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 196
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 197 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 255
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 256 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 315
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL
Sbjct: 316 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKL 363
>gi|395502591|ref|XP_003755662.1| PREDICTED: nuclear receptor ROR-alpha [Sarcophilus harrisii]
Length = 538
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 275 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 316
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 317 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 376
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 377 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 435
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 436 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 494
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 495 LCGRHTEKLMAFK 507
>gi|224088946|ref|XP_002190992.1| PREDICTED: nuclear receptor ROR-beta [Taeniopygia guttata]
Length = 458
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 134/242 (55%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + A + TY + +
Sbjct: 210 SEID---RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYE----------EIKVYQSK 253
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 254 TREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 313
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 314 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 372
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH ++ L +LI+ +P + L LH EKL F+
Sbjct: 373 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDEETL-TKLIAKIPTITALCNLHGEKLQVFK 431
Query: 296 MT 297
+
Sbjct: 432 QS 433
>gi|449266386|gb|EMC77439.1| Nuclear receptor ROR-alpha, partial [Columba livia]
Length = 468
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 205 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 246
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 306
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ + S + +F+F + L +HL++ EI
Sbjct: 307 EVVFIRMCRAFDSQNNTVY-FDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 365
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 366 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 424
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 425 LCGRHTEKLMAFK 437
>gi|281344010|gb|EFB19594.1| hypothetical protein PANDA_014042 [Ailuropoda melanoleuca]
Length = 459
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY + + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYE----------EIKVYQSKSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQVTHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
>gi|37926950|pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 15/233 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 7 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 53
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 54 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 112
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 113 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPR 172
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 173 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 224
>gi|351704944|gb|EHB07863.1| Nuclear receptor subfamily 1 group D member 2 [Heterocephalus
glaber]
Length = 492
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 91/130 (70%), Gaps = 2/130 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAK IPGF L DQV LLKAG
Sbjct: 339 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKHIPGFRDLSQHDQVNLLKAG 398
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D++HS+ A L++SMF+F+E+LN L LSD
Sbjct: 399 TFEVLMVRFALLFDAKERTVTFLSGKKYSVDNLHSTGAGDLLNSMFEFSEKLNALQLSDE 458
Query: 221 EIGLFSSIVV 230
E+ LF+++V+
Sbjct: 459 EMSLFTAVVL 468
>gi|348516240|ref|XP_003445647.1| PREDICTED: nuclear receptor ROR-beta [Oreochromis niloticus]
Length = 481
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 132/243 (54%), Gaps = 24/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREH---PTYTACPSTLACPLNPNSH 112
ELD R+ ++++HL+TC +T ++++ + + + Y + P +
Sbjct: 229 GELD---RIAQNIIKSHLETCQYTTEELQQLAWQTHSYEEVKMYQSKPRDV--------- 276
Query: 113 PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM 172
L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+
Sbjct: 277 -------LWQQCAIQITHAIQYVVEFAKRISGFMELCQNDQILLLKSGCLEVVLVRMCRA 329
Query: 173 FDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
F+ N+++ G+ + L+ ++FDFA+ + L L++ EI LFS+ V+IS
Sbjct: 330 FNPLNNTVL-FEGKYGGMQMFKALGCDDLVSAVFDFAKSMCSLQLTEEEIALFSAAVLIS 388
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
R L V++++ K+ L H++ +NH ++ L A+LIS +P L L LH+E+L
Sbjct: 389 TDRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDAL-AKLISRIPTLSALCTLHTEELQ 447
Query: 293 AFQ 295
AFQ
Sbjct: 448 AFQ 450
>gi|343960182|dbj|BAK63945.1| nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 19/236 (8%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-- 119
+ + + ++HL+TC + ++++ + T L Q +Q
Sbjct: 244 EHLAQNISKSHLETCQYLREELQQI---------------TWQTFLQEEIENYQNKQREV 288
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+ Q + + + I+ VVEFAKR GF LC +DQ+ LLKAG EV+ +R+ FDSQ N+
Sbjct: 289 MWQLCAIKITEAIQYVVEFAKRTDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNT 348
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ +G+ D S + +F+F + L +HL++ EI LFS+ V++S RS L+
Sbjct: 349 VY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQ 407
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
K +E+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 408 EKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFK 462
>gi|301616152|ref|XP_002937524.1| PREDICTED: nuclear receptor ROR-alpha-like [Xenopus (Silurana)
tropicalis]
Length = 464
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 128/236 (54%), Gaps = 19/236 (8%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-- 119
+ + + ++H++TC + ++++ ++ + L Q +Q
Sbjct: 215 EHLAQNISKSHMETCQYLREELQQLMWQTF---------------LQEEIDNYQSKQREV 259
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDSQ N+
Sbjct: 260 MWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNT 319
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ +G+ + + + +F+F + L LHL++ EI LFS+ V++S RS L+
Sbjct: 320 VY-FDGKYAGIEVFKALGCEDFISFVFEFGKSLCSLHLTEDEIALFSAFVLMSGDRSWLQ 378
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
K +E+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 379 EKMKIEKLQQKIQLTLQHVLQKNHRED-GILTKLICKVSTLRALCGRHAEKLMAFK 433
>gi|324507402|gb|ADY43138.1| Nuclear hormone receptor E75 [Ascaris suum]
Length = 631
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 21/305 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQR----MLSTVVRAHLDTCAFT 79
VR+GRVPKR + A + +EL+ ++ ++ +V AH C +
Sbjct: 310 VRYGRVPKRSREGTTEARDNCVAVIDADIEAQSELERDKSAIFDIILSVSHAHKANCNYI 369
Query: 80 ADKIEPMLRRA------REHPTYTACPSTLACPLNPNSHPLQGQQELL--QDFSERFSPT 131
+KI+ M RA R C NS + +Q ++ Q S + P
Sbjct: 370 EEKIKHMQPRAINFNFDRNEMFENGCV---------NSAEMLDEQRIIMWQTLSGKILPE 420
Query: 132 IRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRD 191
I+ +VEFAK IPGF L DQV+L+K G FE+ LVR++ +F+ T S++ +G ++ R
Sbjct: 421 IQHIVEFAKSIPGFLRLDQSDQVSLIKNGFFEMWLVRVSRVFNGLTGSLMLADGNIVSRQ 480
Query: 192 SIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKL 251
+ L M +F+ ++ L LSD E+G+F+++V++S R L + VE+++ KL
Sbjct: 481 QLEIIYGCDLTSMMINFSISISALQLSDGEVGIFTAVVLLSQERPCLNDYGQVEQLKEKL 540
Query: 252 ENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWH 311
L + +H + L L+ L+T+ + H E L FQM ++ L A + +
Sbjct: 541 LEALKLQIATSHAAEQQLYQLLLIKRQQLKTIGEKHWEVLAWFQMNRKRLTLPALYAEIY 600
Query: 312 GEDNS 316
D S
Sbjct: 601 NIDQS 605
>gi|45384158|ref|NP_990424.1| nuclear receptor ROR-beta [Gallus gallus]
gi|1619285|emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY + + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYE----------EIKVYQSKTREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L +LI+ +P + L LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-TKLIAKIPTITALCNLHGEKLQVFKQS 433
>gi|444717987|gb|ELW58805.1| Nuclear receptor ROR-beta [Tupaia chinensis]
Length = 308
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 15/229 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 43 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 89
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 90 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 148
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 149 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 208
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL
Sbjct: 209 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKL 256
>gi|297684595|ref|XP_002819914.1| PREDICTED: nuclear receptor ROR-beta [Pongo abelii]
Length = 464
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 22/241 (9%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG-VFEVLLVRLACMFDSQTNSMI 181
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR C S N++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGNCLEVVLVR--CAVPSPINTLF 318
Query: 182 CLNGEVLVRDSIHSSNARF-----LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
CL + + ++ F L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 319 CLKKYGGCKLFLFHFSSSFIGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRA 378
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 379 WLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQ 437
Query: 297 T 297
+
Sbjct: 438 S 438
>gi|343959836|dbj|BAK63775.1| nuclear receptor ROR-alpha [Pan troglodytes]
Length = 205
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDSQ N+ + +G+
Sbjct: 8 KITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNT-VYFDGK 66
Query: 187 VLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
D S + +F+F + L +HL++ EI LFS+ V++S RS L+ K +E+
Sbjct: 67 YASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEK 126
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 127 LQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFK 174
>gi|351705691|gb|EHB08610.1| Nuclear receptor subfamily 1 group D member 2 [Heterocephalus
glaber]
Length = 348
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++F F+P +++VVEFAKRIPGF L DQV LKAG
Sbjct: 215 LVCPMSKSPYVDPHKSGHEIWEEFLMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNHLKAG 274
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+V A +FD++ + + L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 275 TFEVLMVWFASLFDAKEHMVTFLSGKKYSVDDVHSVGAGDLLNSMFEFSEKLNALQLSDE 334
Query: 221 EIGLFSSIVVIS 232
E+ LF+++V++S
Sbjct: 335 EMSLFTAVVLVS 346
>gi|449269569|gb|EMC80331.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 461
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY + + ++ L Q
Sbjct: 216 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYE----------EIKVYQSKTREALWQ 262
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 263 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 321
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ F+FA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 322 FEGKYGGMQMFKALGSDDLVNEAFEFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 381
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L +LI+ +P + L LH EKL F+ +
Sbjct: 382 KVQKLQEKIYFALQHVIQKNHLDDETL-TKLIAKIPTITALCNLHGEKLQVFKQS 435
>gi|348530304|ref|XP_003452651.1| PREDICTED: nuclear receptor ROR-alpha-like [Oreochromis niloticus]
Length = 526
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 134/243 (55%), Gaps = 24/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA---REHPTYTACPSTLACPLNPNSH 112
AELD +++S ++HL+TC + ++++ M ++ E +Y + P
Sbjct: 274 AELDHLAQIIS---KSHLETCQYLREELQQMSWQSFLQDEVESYQSKP------------ 318
Query: 113 PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM 172
Q+ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ +
Sbjct: 319 ----QEVMWQLCAVKITEAIQYVVEFAKRIDGFMDLCQNDQIVLLKAGSLEVVFLRMCRV 374
Query: 173 FDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
FDSQ N++ +G+ + + + ++FDFA+ + LHLS+ E+ LFS+ +++S
Sbjct: 375 FDSQNNTVF-FDGKFAGPEVFKALGCDDFITAVFDFAKSMCSLHLSEDELALFSAFILLS 433
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
RS L+ K VE+++ K + L HVL +N E L +L LR+L H+EKL
Sbjct: 434 ADRSWLQEKLQVEKLQQKTQLALQHVLQKNQREDEVL-NKLRCKASALRSLCSRHTEKLC 492
Query: 293 AFQ 295
F+
Sbjct: 493 TFR 495
>gi|328710767|ref|XP_001952732.2| PREDICTED: ecdysone-induced protein 78C-like [Acyrthosiphon pisum]
Length = 570
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 3/233 (1%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+++ + +AHL C +T + +LR+ P C S +S Q + L Q
Sbjct: 314 VIAAISQAHLTNCDYTDELTRTLLRKPVASPPAQGCSSPEVASSTADSEEQQ-KIWLWQQ 372
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
+ +PT++ VVEFAKR+PGF L DDQ+ L+K G FE+ L ++ + + S+
Sbjct: 373 LAAHITPTVQRVVEFAKRVPGFVDLSQDDQLILIKVGFFELWLCYVSRL--ATDLSLTFY 430
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+G + R + +F NGL L+DTE+GLF++IV+++P R G+ + +
Sbjct: 431 DGTFITRQQLELIYDVDFATDVFQLVTSFNGLSLTDTEVGLFAAIVLLTPDRPGVSDVKT 490
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V+ + ++ L++ H NL ++S LP+LRT+ H L F++
Sbjct: 491 VQHSQDRIVEAFKLQLSKGHGGDKNLAQTVLSKLPELRTIGARHVSYLEWFRL 543
>gi|68132034|gb|AAY85283.1| RORgamma-B [Danio rerio]
Length = 480
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
L D +R+ VV++HL+TC ++ +++ ++H +L P S L+
Sbjct: 228 LHDIERITQNVVKSHLETCQYSTEEL-------KKHTW------SLYTPEETRSFQLKSA 274
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ ++S
Sbjct: 275 EWMWQQCALQITNAIQYVVEFAKRISGFMELCQNDQIILLKAGCLEVLLIRMCRAYNSSN 334
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+M +G+ + L++++F+ A+ L+ L LS+ E+ L+S+ V+++P R
Sbjct: 335 NTMF-FDGKFASPQLFKALGCDDLVNAVFELAKSLSRLQLSEEEMALYSAAVLLAPDRPW 393
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L + V++++ K+ L H L+ N L +++S LP ++++ LH++KL F++
Sbjct: 394 LTESQQVQKLQEKVYVALQHSLHMNGATIEKL-DKMVSKLPQMKSICNLHTDKLEFFRLV 452
>gi|378705844|gb|AFC34774.1| RORgamma2 [Ctenopharyngodon idella]
Length = 486
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 131/240 (54%), Gaps = 15/240 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
L D +R+ VV++HL+TC ++ ++++ + L P S L+
Sbjct: 234 LHDIERITQNVVKSHLETCQYSPEEMKKL-------------TWNLYTPEETRSFQLKSA 280
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ + Q + + I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ ++S
Sbjct: 281 EWMWQQCALHITNAIQYVVEFAKRISGFMDLCQNDQIILLKAGCLEVLLIRMCRAYNSSN 340
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+M +G+ + L++++F+ A+ L+ L LS+ E+ LFS+ V+++P R
Sbjct: 341 NTMF-FDGKFASPQLFKALGCDDLVNTVFELAKSLSRLQLSEEEMALFSAAVLLAPDRPW 399
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L + V++++ K+ L H L+ N L +++S LP ++++ LH +KL F++
Sbjct: 400 LTESQQVQKLQEKVYVALQHSLHMNGATTEKL-DKMVSKLPQMKSICNLHIDKLEFFRLV 458
>gi|1619314|emb|CAA69930.1| nuclear orphan receptor ROR-alpha 4 [Mus musculus]
Length = 459
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 2/169 (1%)
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ VVEFAKRI GF LC +DQ+ LLKAG V+ +R+ FDSQ N++ +G+
Sbjct: 262 KITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLGVVFIRMCRAFDSQNNTVY-FDGK 320
Query: 187 VLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
D S + +F+F + L +HL++ EI LFS+ V++S S L+ K +E+
Sbjct: 321 YASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADPSWLQEKVKIEK 380
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
++ K+ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 381 LQQKIHMALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFK 428
>gi|189532981|ref|XP_690743.3| PREDICTED: nuclear receptor ROR-beta [Danio rerio]
Length = 480
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 134/240 (55%), Gaps = 15/240 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
L D +R+ VV++HL+TC ++ +++ ++H +L P S L+
Sbjct: 228 LHDIERITQNVVKSHLETCQYSTEEL-------KKHTW------SLYTPEETRSFQLKSA 274
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ ++S
Sbjct: 275 EWMWQQCALQITNAIQYVVEFAKRISGFMELCQNDQIILLKAGCLEVLLIRMCRAYNSSN 334
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+M +G+ + L++++F+ A+ L+ L LS+ E+ L+S+ V+++P R
Sbjct: 335 NTMF-FDGKFASPQLFKALGCDDLVNAVFELAKSLSRLQLSEEEMALYSAAVLLAPDRPW 393
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L + V++++ K+ L H L+ N L +++S LP ++++ LH +KL F++
Sbjct: 394 LTESQQVQKLQEKVYVALQHSLHMNGATIEKL-DKMVSKLPQMKSICNLHIDKLEFFRLV 452
>gi|14994045|gb|AAK76397.1| Rev-Erb beta [Oncorhynchus mykiss]
Length = 461
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 7/187 (3%)
Query: 91 REHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCH 150
R+H T PS P Q QE+ ++FS F P +R+VV FAKRIPGF L
Sbjct: 282 RDHKTNMVTPSLYV-------DPSQRSQEIWEEFSLSFIPAVREVVGFAKRIPGFRDLSE 334
Query: 151 DDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAE 210
DQV+LLK G FEVL+V A +FD ++ L G+ + +HS A L+ SM DF+E
Sbjct: 335 YDQVSLLKNGTFEVLMVCFASLFDVAERTVTFLTGKCYSLELLHSLRAGQLLTSMCDFSE 394
Query: 211 RLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLC 270
+L L L E+ LF ++V++S RSG+++ + VE ++ L L ++ NH +
Sbjct: 395 KLAALQLDKDEMSLFIAVVLVSADRSGIQDLKSVEALQDTLIRALRSLIMTNHANETTTF 454
Query: 271 AELISML 277
+L+ L
Sbjct: 455 TKLLLKL 461
>gi|269785035|ref|NP_001161669.1| thyroid hormone receptor [Saccoglossus kowalevskii]
gi|268054363|gb|ACY92668.1| thyroid hormone receptor [Saccoglossus kowalevskii]
Length = 381
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 108/175 (61%)
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q+ +E +P+I VVEFAKR+PGF+ L ++DQV LLK E++ +R+A +D+ T +++
Sbjct: 188 QNLAEVVTPSIIKVVEFAKRVPGFTTLEYNDQVLLLKTCCMEIMCLRIAQKYDADTKTLL 247
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
NG + + +H L++ +FDFA L L L++TE+ L +S+++++ R GL N
Sbjct: 248 LSNGLKVQKGHLHDGGLGELIEPIFDFATSLARLQLNETEMSLLASVLLVAADRPGLNNS 307
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
VE+++ + N H + + P+ A+++ + DLRT++ H+E+++ ++
Sbjct: 308 RAVEQLQDTILNAFQHYIAETRPKTPVHWAKILMKITDLRTISARHAERIMCIKL 362
>gi|449279574|gb|EMC87146.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 466
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 15/234 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ VV++HL+TC +T ++++ + +L P + + + + Q
Sbjct: 219 RVAQNVVKSHLETCQYTTEELKRL-------------AWSLYSPEEVRALQSKSCEAMWQ 265
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
S + S I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ F+ NS +
Sbjct: 266 QCSLQISNAIQYVVEFAKRIDGFMELCQNDQIILLKAGCLEVLLLRMVRAFNP-LNSTVL 324
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G+ S L+ ++F+ L L LSD E+ LF++ V++SP R L +
Sbjct: 325 FDGKFGSVQMFKSLGCDDLIGAIFELGRTLCRLQLSDEELALFTAAVLLSPDRPWLTETK 384
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ K+ L H + + H + L ++++S LP ++T+ LH +KL F++
Sbjct: 385 KVQKLQDKIYVALQHEIQKKHSAEDKL-SKMVSKLPLMKTICNLHLDKLEFFRL 437
>gi|326934368|ref|XP_003213262.1| PREDICTED: nuclear receptor ROR-beta-like [Meleagris gallopavo]
Length = 658
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 15/234 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ VV++HL+TC +TA++++ H ++ L P + + + + Q
Sbjct: 411 RIAQNVVKSHLETCQYTAEELK--------HLAWS-----LYSPEEVRALQSKSCEAMWQ 457
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
S S I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ F+ N+++
Sbjct: 458 QCSLHISNAIQYVVEFAKRIDGFMELCQNDQIILLKAGCLEVLLLRMIRAFNPLNNTVL- 516
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + L+ ++F+ L L LSD E+ LF++ V++SP R L +
Sbjct: 517 FEGKFGGVQMFKALGCDDLISAVFELGRTLCRLQLSDEELALFTAAVLLSPDRPWLTESK 576
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ K+ L H + + H + L ++++S LP ++T+ LH +KL F++
Sbjct: 577 KVQKLQDKIYMALQHEIQKKHSAEDKL-SKMVSKLPLMKTICNLHLDKLEFFRL 629
>gi|363743762|ref|XP_003642912.1| PREDICTED: nuclear receptor ROR-beta-like [Gallus gallus]
Length = 540
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 15/234 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ VV++HL+TC +TA++++ H ++ L P + + + + Q
Sbjct: 293 RIAQNVVKSHLETCQYTAEELK--------HLAWS-----LYSPEEVRALQSKSCEAMWQ 339
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
S S I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ F+ N+++
Sbjct: 340 QCSLHISNAIQYVVEFAKRIDGFMELCQNDQIILLKAGCLEVLLLRMIRAFNPLNNTVL- 398
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + L+ ++F+ L L LSD E+ LF++ V++SP R L +
Sbjct: 399 FEGKFGGVQMFKALGCDDLISAVFELGRTLCRLQLSDEELALFTAAVLLSPDRPWLTESK 458
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ K+ L H + + H + L ++++S LP ++T+ LH +KL F++
Sbjct: 459 KVQKLQDKIYVALQHEIQKKHSAEDKL-SKMVSKLPLMKTICNLHLDKLEFFRL 511
>gi|301618956|ref|XP_002938868.1| PREDICTED: nuclear receptor ROR-beta-like [Xenopus (Silurana)
tropicalis]
Length = 450
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSER 127
++R+HL TC FT+D++ M+ A H C + S P + +L +
Sbjct: 208 IIRSHLGTCQFTSDELSKMVWNA--HSQEEVC--------SLQSKPCEMMWQLC---AIH 254
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S I+ VVEFAKR+ GF LC +DQ+ LLKAG EVLL+R+ F+ N+++ G+
Sbjct: 255 VSNAIQYVVEFAKRLDGFMELCQNDQIVLLKAGCLEVLLIRMTRAFNPSNNTVL-FEGKF 313
Query: 188 LVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
S L+ ++FD + L L LSD EI LF++ V++SP R L + V+++
Sbjct: 314 GGIQMFRSLGCDDLLFAIFDLGQALCRLSLSDEEIALFTAAVLMSPDRPRLTESKKVQKL 373
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ ++ L + + H + +L ++IS LP ++T+ LH++KL F++
Sbjct: 374 QDRIFLALQKEIQKRHCSE-DLLTKMISKLPLMKTICNLHADKLEFFRI 421
>gi|348527674|ref|XP_003451344.1| PREDICTED: nuclear receptor ROR-beta-like [Oreochromis niloticus]
Length = 474
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 130/236 (55%), Gaps = 15/236 (6%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ VV++H++T +T+++++ M TL P S+ + + +
Sbjct: 226 ERVAQNVVKSHIETNQYTSEELKRM-------------AWTLYSPEETRSYQTKSAEAMW 272
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + I+ VVEFAKRI GF LC +DQ+ LLKAG +VLL+R+ C + N+ +
Sbjct: 273 QQCAVHITNAIQYVVEFAKRISGFMDLCQNDQIILLKAGCMDVLLIRM-CRAYNPINNTV 331
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ + L++++FD A+ L+ + +SD EI LFS+ V++SP R L +
Sbjct: 332 FFDGKFSTPQLFKALGCDDLVNAVFDLAKSLSRIQMSDEEIALFSAAVLLSPDRPWLTDV 391
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
+ +++++ K+ L L + + L A+++S LP +R++ LH +KL F++
Sbjct: 392 QKIQKLQEKVYVALQRCLQREGASEEKL-AKMVSKLPTMRSICNLHIDKLEFFRLV 446
>gi|344236487|gb|EGV92590.1| Nuclear receptor ROR-alpha [Cricetulus griseus]
Length = 959
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL + + + ++HL+TC + ++++ + T
Sbjct: 202 TNGETSPTVSMAEL---EHLAQNISKSHLETCQYLREELQQI---------------TWQ 243
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 244 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 303
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 304 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 362
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPE 265
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E
Sbjct: 363 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRE 405
>gi|291228691|ref|XP_002734320.1| PREDICTED: nuclear receptor subfamily 1, group D, member 1-like
[Saccoglossus kowalevskii]
Length = 803
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 138/262 (52%), Gaps = 20/262 (7%)
Query: 55 AAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR--AREHPTYTACPSTL----ACPLN 108
+ E++ + +L ++ ++H D C FT +I + +R E Y++ L CP
Sbjct: 522 SEEVEQLEVLLHSIAKSHHDNCHFTYARIRILKKRYFGIEESEYSSRGRKLHDCSNCPPP 581
Query: 109 PN-------------SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVT 155
P+ S +++ F+++F+ I +V F K+IPGF +L +DQ+
Sbjct: 582 PDFPTSELPPRELTMSEDKITATHMIRFFADKFTGLITRIVVFTKQIPGFRMLDKEDQII 641
Query: 156 LLKAGVFEVLLVRLACMFDSQTNSM-ICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNG 214
L+KAG+FEV VR + D+ +N + G+ R+ + ++D +F+ A N
Sbjct: 642 LIKAGLFEVSAVRFTTVIDTNSNMVNYWTTGDRFSRELARQGHLGKVIDLLFELAGWFNE 701
Query: 215 LHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELI 274
L L+D E+G +++++++ R GL+ +E V ++ +L +L L + HP++ +L +++
Sbjct: 702 LELTDDEVGCLNAVIMVAADRPGLKKREDVLVLQTRLLKVLQLELKRTHPDRPDLFTQVL 761
Query: 275 SMLPDLRTLNQLHSEKLVAFQM 296
+++P LR + H+ +L+ ++
Sbjct: 762 TIIPKLREIGPEHTRRLMELKI 783
>gi|352092134|gb|AEQ61830.1| RAR-related orphan receptor A [Gallus gallus]
Length = 327
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++H++TC + ++++ + T
Sbjct: 103 TNGETSPTVSMAELE---HLAQNISKSHMETCQYLREELQQI---------------TWQ 144
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 145 TFLQEEIENYQNKQREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 204
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ + S + +F+F + L +HL++ EI
Sbjct: 205 EVVFIRMCRAFDSQNNT-VYFDGKYASPEVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 263
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 264 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 322
Query: 283 LNQLH 287
L H
Sbjct: 323 LCGRH 327
>gi|417411185|gb|JAA52038.1| Putative steroid hormone nuclear receptor, partial [Desmodus
rotundus]
Length = 495
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 130/249 (52%), Gaps = 23/249 (9%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ V +++ +TC ++E +LR+ S L
Sbjct: 236 TPEAPYASLTEIEHLVQNVCKSYRETCQL---RLEDLLRQR----------SNLFSREEV 282
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 283 AGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM 342
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
C + N + G+ + + L+ S+FDF+ L+ LHLS+ EI L++++V
Sbjct: 343 -CRAYNADNHTVFFEGKYGGVELFRALGCSELISSIFDFSRLLSALHLSEDEIALYTALV 401
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQL 286
+I+ SR GL+ K +E+++ LE H L + H + +++ LP LR+L
Sbjct: 402 LINDSRPGLQEKRKIEQLQANLEVAFHHHLCKTHRQG------ILAELPPKGKLRSLCSQ 455
Query: 287 HSEKLVAFQ 295
H EKL FQ
Sbjct: 456 HMEKLRNFQ 464
>gi|260806090|ref|XP_002597918.1| hypothetical protein BRAFLDRAFT_174225 [Branchiostoma floridae]
gi|229283187|gb|EEN53930.1| hypothetical protein BRAFLDRAFT_174225 [Branchiostoma floridae]
Length = 526
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E+ + I+ VVEFAK IPGF LC +DQ+ LLK G FE LLVR++ + TN+++ +
Sbjct: 338 AEQITGCIQMVVEFAKNIPGFMDLCQNDQIILLKTGCFENLLVRMSREINPNTNAVL-FD 396
Query: 185 GEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
G+ D L+ +M+D + L L++ E+ LF ++V++S R GLR V
Sbjct: 397 GKFASIDFFSILGLNDLVSAMYDLGRSVCMLKLTEQELALFCAVVLVSADRPGLREPMAV 456
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E+++ K+ L + ++Q HP + + A+++ +P+LR++ H E+L A +M
Sbjct: 457 EKLQEKIIQALRYQVSQTHPAEPSFLAKILMKMPNLRSVAARHMEELAALKM 508
>gi|432114341|gb|ELK36269.1| Nuclear receptor ROR-gamma [Myotis davidii]
Length = 664
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 17/253 (6%)
Query: 43 QSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPST 102
+S + + T +A A L D + ++ V +++ +TC ++E +LR+ S
Sbjct: 398 RSPSFRSTPEAPYASLTDIEHLVQNVCKSYRETCQL---RLEDLLRQR----------SN 444
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L + + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG
Sbjct: 445 LFSREEVVGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAM 504
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+LVR+ C + +N + G+ + + L+ S+FDF+ L+ L LS+ EI
Sbjct: 505 EVVLVRM-CRAYNASNHTVFFEGKYGGVELFRALGCSELIGSIFDFSRSLSALRLSEDEI 563
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
L++++V+I+ +R GL+ K VE+++ LE H L + H + + AEL LR+
Sbjct: 564 ALYTALVLINANRPGLQEKRKVEQLQSNLELAFHHHLCKTH--RQGILAELPPK-GKLRS 620
Query: 283 LNQLHSEKLVAFQ 295
L H EKL FQ
Sbjct: 621 LCSQHVEKLQTFQ 633
>gi|443721890|gb|ELU11015.1| hypothetical protein CAPTEDRAFT_176212 [Capitella teleta]
Length = 362
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 23/275 (8%)
Query: 48 KCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPL 107
KCTE D + + AH TC FT++++E R + P+ P LA
Sbjct: 108 KCTEDI------DLGLLTKAIADAHSRTCLFTSEQVE---RMRMQQPS----PEQLAAYQ 154
Query: 108 NPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLV 167
N ++L ++ +E+ + ++ ++EF K +PGF L DDQ+ LLK G FEV L+
Sbjct: 155 N------MSHEQLWREIAEKLTMAVQQIIEFCKMVPGFMNLLQDDQIMLLKGGSFEVALL 208
Query: 168 RLACMFDSQTNSMICLNGEVLVRDSIHSSN--ARFLMDSMFDFAERLNGLHLSDTEIGLF 225
RL FD ++S+I + D + N + LM ++F+FA L L++TEI L
Sbjct: 209 RLCHAFDVDSDSVI-FGTAYIPLDVFRNLNEDEKLLMRNIFEFARGLITFKLNETEIALL 267
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN-LCAELISMLPDLRTLN 284
S++V+++P R G+++ +++++ ++E L NHPE + L L LP L+ L+
Sbjct: 268 SAMVLMNPRRVGVKDAPIIQKLGERIEAALKVQFQCNHPELGDQLSLHLSEKLPLLQLLS 327
Query: 285 QLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSP 319
H + L F+ A ++ ++ SP
Sbjct: 328 ARHIDILNKFKQGNPGVLFPALHKELFSQEGFDSP 362
>gi|410921372|ref|XP_003974157.1| PREDICTED: nuclear receptor ROR-beta-like [Takifugu rubripes]
Length = 499
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 133/240 (55%), Gaps = 15/240 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
L D +R+ +VV++H++T ++ ++++ M TL P +S+ ++
Sbjct: 247 LLDTERITQSVVKSHIETSQYSTEELKRM-------------AWTLYSPEETHSYQMKSA 293
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ + Q + + I VVEFAKRI GF LC +DQ+ LLKAG +VLL+R+ ++
Sbjct: 294 EAMWQQCAVHITNAIHYVVEFAKRITGFMDLCQNDQIILLKAGCMQVLLIRMCRAYNPIN 353
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+++ +G+ + L++++FD A+ L+ L +S+ E+ LFS+ V++SP R
Sbjct: 354 NTLL-FDGKCATPQLFKALGCDDLVNAVFDLAKGLSRLQMSEEEMALFSAAVLLSPDRPW 412
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L + + V++++ K+ L L ++ + L ++S LP ++++ LH +KL F++
Sbjct: 413 LTDVQKVQKLQEKVYVALQRCLQRDGASEEKL-TRMVSKLPVMKSICNLHIDKLEFFRLV 471
>gi|334324576|ref|XP_001372023.2| PREDICTED: nuclear receptor ROR-gamma [Monodelphis domestica]
Length = 530
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 327 EMWERCAHRLTEAIQYVVEFAKRLAGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 385
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ D + L+ S+FDF+ L LH SD EI L++++V+I+ SR L
Sbjct: 386 RTVFFEGKYGGMDLFRALGCSELIGSIFDFSHSLCALHFSDDEIALYTALVLINASRPWL 445
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K+ VE+++ LE ++L + H + +++ LP LR+L H EKL +FQ
Sbjct: 446 QEKKKVEQLQHSLELAFHYLLCKTHRQG------ILAKLPPKGKLRSLCSQHMEKLQSFQ 499
>gi|351702700|gb|EHB05619.1| Nuclear receptor ROR-gamma, partial [Heterocephalus glaber]
Length = 496
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L + + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 243 ACLKETEHLVQNVCKSYRETCQL---RLEDLLRQRTNLFSREEVT--------------- 284
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 285 SYQRKSEWEMWERCAHRLTEAIQHVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM- 343
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L LS+ EI L++++V+
Sbjct: 344 CRAYNADNHTVFFEGKYGGVELFRALGCSELIGSIFDFSHSLSALRLSEDEIALYTALVL 403
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L H
Sbjct: 404 INANRPGLQEKRKVEQLQCSLELAFHHHLCRTHRQG------ILARLPPKGKLRSLCSQH 457
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 458 VEKLQVFQ 465
>gi|432909380|ref|XP_004078181.1| PREDICTED: nuclear receptor ROR-alpha-like [Oryzias latipes]
Length = 495
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ Q + R + ++ VVEFAK IPGF +L +DQ+ LLK G EV+LVR++ F+++ N
Sbjct: 291 EMWQHCAIRLTDAVQYVVEFAKHIPGFRMLSQNDQIALLKTGSLEVVLVRMSRFFNTENN 350
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
++ +G+ + S L++++FDFA + L L++ +I LFS++V+I+ R L
Sbjct: 351 TVF-FDGKFAGSEVFKSLGCGDLIEAVFDFAYGMCALKLTEQQIALFSALVLINADRPCL 409
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAF 294
++ V+R++ +E L H+L++++ E NL +L + LR+L LH EKL F
Sbjct: 410 EDRGRVQRVQRSVELGLTHILHRDNQE--NLMHKLYQRMAVLRSLCSLHMEKLHWF 463
>gi|338725065|ref|XP_001916080.2| PREDICTED: nuclear receptor ROR-gamma [Equus caballus]
Length = 518
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + T +A A L + + ++ V +++ +TC ++E +LR+ S +
Sbjct: 253 SPGFRSTTEAPYASLTETEHLVQNVCKSYRETCQL---RLEDLLRQR----------SNI 299
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
S+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 300 FSREEVASYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 359
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI
Sbjct: 360 VVLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSALRFSEDEIA 418
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DL 280
L++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP L
Sbjct: 419 LYTALVLINANRPGLQEKRKVEQLQYNLEMAFHHHLCKTHRQG------ILAKLPPKGKL 472
Query: 281 RTLNQLHSEKLVAFQ 295
R+L H EKL FQ
Sbjct: 473 RSLCSQHVEKLQTFQ 487
>gi|443700841|gb|ELT99607.1| hypothetical protein CAPTEDRAFT_167148 [Capitella teleta]
Length = 362
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 105/178 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
++ Q +E +P+I VVEFAKR+PGF L DDQ+ LLK+ E++ +R AC +D
Sbjct: 164 DVWQQLAEVMTPSIVKVVEFAKRVPGFLQLNVDDQILLLKSCCMEIMCLRAACRYDPVNR 223
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
++ NG +L ++ ++ L++ +FDFA L+ L L TEI L ++++++ R+GL
Sbjct: 224 TLTLQNGLLLKKNQLNHGGLGLLVEPIFDFAVGLSKLQLDQTEIALLAAVLLMQSDRTGL 283
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ E VE+++ + + + P Q A+++ + DLRT++ H+E+++ ++
Sbjct: 284 KEPEAVEKLQDAVLGAYKRYIAEQRPMQPVHWAKILMKVTDLRTISTRHAERVLCIKL 341
>gi|426218929|ref|XP_004003687.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor ROR-gamma [Ovis
aries]
Length = 524
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 23/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ V +++ +TC ++E +LR+ S + + +
Sbjct: 229 ASLTETEHLVQNVCKSYRETCQL---RLEDLLRQR----------SNIFSSEEVAGYQRK 275
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ +++
Sbjct: 276 SMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNT 335
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N++ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 336 DNNTVF-FEGKYGGVELFRALGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANR 394
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H EKL
Sbjct: 395 PGLQEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQ 448
Query: 293 AFQ 295
FQ
Sbjct: 449 TFQ 451
>gi|395536025|ref|XP_003770021.1| PREDICTED: nuclear receptor ROR-gamma [Sarcophilus harrisii]
Length = 497
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 294 EMWERCAHRLTEAIQYVVEFAKRLEGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 352
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ D + L+ S+FDF+ L LH S+ EI L++++V+I+ +R L
Sbjct: 353 RTVFFEGKYGGMDLFRALGCSELIGSIFDFSHSLCALHFSEDEIALYTALVLINANRPWL 412
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VER++ LE H+L + H + +++ LP LR+L H EKL +FQ
Sbjct: 413 QEKRKVERLQHNLELAFHHLLCKTHRQG------ILAKLPPKGKLRSLCSQHMEKLQSFQ 466
>gi|73586751|gb|AAI03030.1| RORC protein [Bos taurus]
Length = 530
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ V +++ DTC ++E +LR+ S + + +
Sbjct: 277 ASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNIFSREEVAGYQRK 323
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 324 SMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYN 382
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 383 ADNDTVFFEGKYGGVELFRALGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANR 442
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H EKL
Sbjct: 443 PGLQEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQ 496
Query: 293 AFQ 295
FQ
Sbjct: 497 TFQ 499
>gi|348586379|ref|XP_003478946.1| PREDICTED: nuclear receptor ROR-gamma-like [Cavia porcellus]
Length = 620
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 129/248 (52%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L + + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 367 ASLTEIEHLVQNVCKSYRETCQL---RLEDLLRQRTNLFSREEVT--------------- 408
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ L+KAG EV+LVR+
Sbjct: 409 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLIKAGAMEVVLVRM- 467
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V+
Sbjct: 468 CRAYNADNHTVFFEGKYGGVELFRALGCSELIGSIFDFSHSLSALHFSEDEIALYTALVL 527
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE+++ LE H L + H + ++++ LP LR+L H
Sbjct: 528 INANRPGLQEKRKVEQLQYSLELAFHHHLCKTHRQ------DILAKLPPKGKLRSLCSQH 581
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 582 VEKLQVFQ 589
>gi|195348475|ref|XP_002040774.1| GM22351 [Drosophila sechellia]
gi|194122284|gb|EDW44327.1| GM22351 [Drosophila sechellia]
Length = 986
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 736 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 787
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 788 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 846
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 847 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 905
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 906 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRM 962
>gi|218156206|dbj|BAH03335.1| retinoic acid receptor 3 [Lethenteron camtschaticum]
Length = 519
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 128/254 (50%), Gaps = 5/254 (1%)
Query: 48 KCTEKALAAE--LDDEQRMLSTVVRAHLDTCAFTADKIEPML---RRAREHPTYTACPST 102
+C E ++ E +D + VVR L +IE ++ RRA + + C
Sbjct: 179 RCLEVGMSKESVRNDRSKKKKEVVRPELLEIPPPCPEIEDLIDRVRRAHQETFPSLCQLG 238
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + L FSE + I VEFAKRIPGFS L DDQ+TLLKA
Sbjct: 239 KYTTSNGSGQRATLDANLWDKFSELSTKCIVKTVEFAKRIPGFSTLGIDDQITLLKAACL 298
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 299 DILILRICTRYTPEHDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAAQLLPLEMDDTEA 358
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL SSI +I+ R L + E V+R++ L L + + + P + ++ +++ + DLR
Sbjct: 359 GLLSSICLITGDRPELEHPERVDRLQEPLLEALKYYVRKRRPTKPHMFPKILMKITDLRG 418
Query: 283 LNQLHSEKLVAFQM 296
++ S++++ +M
Sbjct: 419 ISSKGSDRVITLKM 432
>gi|440906746|gb|ELR56975.1| Nuclear receptor ROR-gamma, partial [Bos grunniens mutus]
Length = 495
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ V +++ DTC ++E +LR+ S + + +
Sbjct: 242 ASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNIFSREEVAGYQRK 288
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 289 SMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYN 347
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 348 ADNDTVFFEGKYGGVELFRALGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANR 407
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H EKL
Sbjct: 408 PGLQEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQ 461
Query: 293 AFQ 295
FQ
Sbjct: 462 TFQ 464
>gi|195592082|ref|XP_002085765.1| GD14945 [Drosophila simulans]
gi|194197774|gb|EDX11350.1| GD14945 [Drosophila simulans]
Length = 427
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 177 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 228
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 229 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 287
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 288 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 346
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 347 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 406
Query: 300 QQQL 303
+ +L
Sbjct: 407 KLRL 410
>gi|335892618|ref|NP_001229482.1| peroxisome proliferator-activated receptor alpha [Equus caballus]
gi|338721459|ref|XP_003364379.1| PREDICTED: peroxisome proliferator-activated receptor alpha [Equus
caballus]
Length = 468
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDMEDAETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A HP + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNHPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFTMLSSVMN-KDGMLVAYGS 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|194875414|ref|XP_001973593.1| GG16168 [Drosophila erecta]
gi|190655376|gb|EDV52619.1| GG16168 [Drosophila erecta]
Length = 863
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 613 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 664
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 665 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 723
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 724 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 782
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 783 VIGRARELVAEALRVQILRSRTGSPQALQLMPALEAKVPELRSLGAKHFSHLDWLRM 839
>gi|126513266|gb|ABO15738.1| RAR-related orphan receptor C [Bos taurus]
Length = 479
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ V +++ DTC ++E +LR+ S + + +
Sbjct: 226 ASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNIFSREEVAGYQRK 272
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 273 SMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYN 331
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 332 ADNDTVFFEGKYGGVELFRALGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANR 391
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H EKL
Sbjct: 392 PGLQEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQ 445
Query: 293 AFQ 295
FQ
Sbjct: 446 TFQ 448
>gi|7769650|gb|AAF69495.1|AF238309_1 nuclear receptor E78B [Drosophila melanogaster]
Length = 385
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 135 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 186
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 187 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 245
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 246 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 304
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 305 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 364
Query: 300 QQQL 303
+ +L
Sbjct: 365 KLRL 368
>gi|56411840|ref|NP_730609.3| Ecdysone-induced protein 78C, isoform B [Drosophila melanogaster]
gi|55380524|gb|AAN12161.3| Ecdysone-induced protein 78C, isoform B [Drosophila melanogaster]
Length = 392
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 142 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 193
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 194 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 252
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 253 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 311
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 312 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 371
Query: 300 QQQL 303
+ +L
Sbjct: 372 KLRL 375
>gi|410924429|ref|XP_003975684.1| PREDICTED: nuclear receptor ROR-beta-like [Takifugu rubripes]
Length = 527
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 130/244 (53%), Gaps = 24/244 (9%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPML---RRAREHPTYTACPSTLACPLNPNSHPL 114
+ D + + ++V++HL+TC ++A+ ++ A E Y
Sbjct: 276 ITDLEHITQSIVKSHLETCQYSAEDMKRFTWVQYSAEETRVYQN---------------- 319
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
+ + + Q + + I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ +F+
Sbjct: 320 KSAEWMWQQCAHHITNAIQYVVEFAKRIAGFMDLCQNDQIILLKAGCLEVLLIRMCRVFN 379
Query: 175 SQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
N I NG+ + L+ ++FD + L L L+D E+ LFS+ V++SP
Sbjct: 380 V-NNGTIFFNGKFAPAQFFKALGCDDLVSAVFDLGKGLCRLQLTDEEVALFSAAVLLSPD 438
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQN-HPEQMNLCAELISMLPDLRTLNQLHSEKLVA 293
R L+ + V++++ K+ L H L+++ E+++ +++S LP ++++ LH +KL
Sbjct: 439 RPWLKEGQKVQKLQEKVYLALQHSLHKSVSDEKLD---KMVSKLPTMKSICNLHIDKLEF 495
Query: 294 FQMT 297
F++
Sbjct: 496 FRLV 499
>gi|34098563|sp|Q8HYL6.1|PPARA_PHACI RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|27462770|gb|AAO15578.1|AF463455_1 peroxisome proliferator activated receptor alpha protein
[Phascolarctos cinereus]
Length = 468
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSEVADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+KI+ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKIKARIILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSNLNLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+ERM+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IERMQESIVHVLQLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|47225409|emb|CAG11892.1| unnamed protein product [Tetraodon nigroviridis]
Length = 503
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 16/231 (6%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+ +++VRAH +T + ++++ + + A S + E+ Q
Sbjct: 269 LCASIVRAHRETSQWRVEELQGLRWKLFSREEIQAYQS-------------KSVDEMWQH 315
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
+ R + ++ VVEFAK IPGF +L +DQ+ LLK G EV+LVR++ F+++ N++
Sbjct: 316 CAIRLTDAVQYVVEFAKHIPGFRMLTQNDQIALLKTGSMEVVLVRMSRFFNTENNTVY-F 374
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+G+ D S L+ ++FDFA + L LS+ ++ LFS++V+I+ R L ++
Sbjct: 375 DGKFAGADLFKSLACGDLITAVFDFAHDMCALKLSEHQLALFSALVLINTDRPCLEDRGK 434
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAF 294
V+R++ +E L H+L +++ E L A+L + LR+L LH EKL F
Sbjct: 435 VQRVQRTVELGLRHILQKDNQE--GLMAKLYQKMAVLRSLCSLHMEKLRWF 483
>gi|2243142|emb|CAA67385.1| nuclear hormone receptor [Drosophila melanogaster]
Length = 391
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 141 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 192
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 193 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 251
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 252 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 310
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 311 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 370
Query: 300 QQQL 303
+ +L
Sbjct: 371 KLRL 374
>gi|395537657|ref|XP_003770810.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Sarcophilus harrisii]
Length = 468
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDVEDSEIADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+KI+ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKIKARIILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+ERM+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IERMQESIVHVLQLHLQNNHPDDTFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|195170936|ref|XP_002026267.1| GL24673 [Drosophila persimilis]
gi|194111162|gb|EDW33205.1| GL24673 [Drosophila persimilis]
Length = 443
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 193 VIVCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIATTVA-------ESLEFQKIWLWQ 244
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 245 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 303
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 304 -DGAYLTRQQLEILYDTDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRTGLSEPK 362
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 363 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 422
Query: 300 QQQL 303
+ +L
Sbjct: 423 KLRL 426
>gi|34223729|sp|P45447.3|E78C_DROME RecName: Full=Ecdysone-induced protein 78C; Short=DR-78; AltName:
Full=Nuclear receptor subfamily 1 group E member 1
Length = 866
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 616 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 667
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 668 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 726
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 727 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 785
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 786 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 845
Query: 300 QQQL 303
+ +L
Sbjct: 846 KLRL 849
>gi|7769648|gb|AAF69494.1| nuclear receptor E78A [Drosophila melanogaster]
Length = 866
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 616 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 667
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 668 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 726
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 727 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 785
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 786 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 845
Query: 300 QQQL 303
+ +L
Sbjct: 846 KLRL 849
>gi|24667937|ref|NP_524195.2| Ecdysone-induced protein 78C, isoform A [Drosophila melanogaster]
gi|386771542|ref|NP_001246862.1| Ecdysone-induced protein 78C, isoform D [Drosophila melanogaster]
gi|386771544|ref|NP_001246863.1| Ecdysone-induced protein 78C, isoform E [Drosophila melanogaster]
gi|23094217|gb|AAF51692.2| Ecdysone-induced protein 78C, isoform A [Drosophila melanogaster]
gi|383292049|gb|AFH04533.1| Ecdysone-induced protein 78C, isoform D [Drosophila melanogaster]
gi|383292050|gb|AFH04534.1| Ecdysone-induced protein 78C, isoform E [Drosophila melanogaster]
Length = 862
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 612 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 663
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 664 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 722
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 723 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 781
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 782 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 841
Query: 300 QQQL 303
+ +L
Sbjct: 842 KLRL 845
>gi|2243140|emb|CAA67384.1| nuclear hormone receptor [Drosophila melanogaster]
Length = 865
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 615 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 666
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 667 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 725
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 726 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 784
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 785 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 844
Query: 300 QQQL 303
+ +L
Sbjct: 845 KLRL 848
>gi|195495655|ref|XP_002095359.1| GE19737 [Drosophila yakuba]
gi|194181460|gb|EDW95071.1| GE19737 [Drosophila yakuba]
Length = 876
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 626 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 677
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 678 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 736
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 737 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 795
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 796 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKVPELRSLGAKHFSHLDWLRM 852
>gi|297279987|ref|XP_002801824.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 1 [Macaca
mulatta]
gi|355558432|gb|EHH15212.1| hypothetical protein EGK_01272 [Macaca mulatta]
Length = 572
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 313 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 360
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 361 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 414
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 415 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 473
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 474 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 527
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 528 SLCSQHVERLQIFQ 541
>gi|355745653|gb|EHH50278.1| hypothetical protein EGM_01084 [Macaca fascicularis]
Length = 572
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 313 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 360
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 361 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 414
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 415 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 473
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 474 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 527
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 528 SLCSQHVERLQIFQ 541
>gi|183637599|gb|ACC64601.1| RAR-related orphan receptor C isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 517
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 314 EMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 372
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ SR GL
Sbjct: 373 HTVFFEGKYGGVELFRALGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINASRPGL 432
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + L++ LP LR+L H EKL +FQ
Sbjct: 433 QEKRKVEQLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQHVEKLQSFQ 486
>gi|297279989|ref|XP_002801825.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 2 [Macaca
mulatta]
Length = 574
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 315 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 362
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 363 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 416
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 417 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 475
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 476 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 529
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 530 SLCSQHVERLQIFQ 543
>gi|335286927|ref|XP_003355220.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Sus scrofa]
Length = 518
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + + T +A A L + + ++ V +++ DTC ++E +LR+ S +
Sbjct: 253 SPSFRSTPEAPYASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNI 299
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 300 FSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 359
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI
Sbjct: 360 VVLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSALRFSEDEIA 418
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DL 280
L++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP L
Sbjct: 419 LYTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQG------ILAKLPPKGKL 472
Query: 281 RTLNQLHSEKLVAFQ 295
R+L H EKL FQ
Sbjct: 473 RSLCSQHVEKLQTFQ 487
>gi|126338762|ref|XP_001364221.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
[Monodelphis domestica]
Length = 468
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSEIADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+KI+ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKIKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+ERM+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IERMQESIVHVLQLHLQNNHPDDAFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|334333054|ref|XP_001372755.2| PREDICTED: nuclear receptor ROR-beta [Monodelphis domestica]
Length = 505
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 15/222 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 280 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KTREALWQ 326
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 327 QCAVQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 385
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 386 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 445
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
V++++ K+ L HV+ +NH + L A++ +P T N
Sbjct: 446 KVQKLQEKIYFALQHVIQKNHLDDETL-AKVGPQVPLCSTYN 486
>gi|194391110|dbj|BAG60673.1| unnamed protein product [Homo sapiens]
Length = 572
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 313 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 360
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 361 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 414
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 415 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 473
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 474 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 527
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 528 SLCSQHVERLQIFQ 541
>gi|50978780|ref|NP_001003093.1| peroxisome proliferator-activated receptor alpha [Canis lupus
familiaris]
gi|24418624|sp|Q95N78.1|PPARA_CANFA RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|13752442|gb|AAK38655.1|AF350327_1 peroxisome proliferator activated receptor alpha [Canis lupus
familiaris]
Length = 468
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 153/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEQDPEDAETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQTNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|260807357|ref|XP_002598475.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
gi|21310107|gb|AAM46149.1|AF378827_1 retinoic acid receptor [Branchiostoma floridae]
gi|229283748|gb|EEN54487.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
Length = 415
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 102/178 (57%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
EL Q FS+ + TI +V+FAK++PGF+ DQ+TLLKA ++L++RLA D +++
Sbjct: 216 ELWQHFSDLCTETIIKIVQFAKKVPGFTTFGTADQITLLKAACLDILILRLATRLDKESD 275
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
++ +NG +L R +H++ L D +F FAE + L +TEIGL SI ++ R GL
Sbjct: 276 TVTFINGMMLSRTQMHNAGFGPLTDGVFTFAEGMQKLLFDETEIGLMCSICLVCGDRQGL 335
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ + E ++ L L + P+ ++I + DLR+++ +E+++ +M
Sbjct: 336 EDIQRAENLQEPLLEALKAYSRRRIPDDPQRFPKMIMKITDLRSISSKGAERVITLKM 393
>gi|758420|gb|AAA64751.1| ROR gamma [Homo sapiens]
Length = 560
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 133/260 (51%), Gaps = 33/260 (12%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTA 98
S + + T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 253 SPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--- 306
Query: 99 CPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLK 158
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLK
Sbjct: 307 ------------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLK 354
Query: 159 AGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLS 218
AG EV+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S
Sbjct: 355 AGAMEVVLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFS 413
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
+ EI L++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP
Sbjct: 414 EDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLP 467
Query: 279 ---DLRTLNQLHSEKLVAFQ 295
LR+L H E+L FQ
Sbjct: 468 PKGKLRSLCSQHVERLQIFQ 487
>gi|426331483|ref|XP_004026710.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Gorilla gorilla
gorilla]
Length = 572
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 313 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 360
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 361 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 414
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 415 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 473
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 474 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQT------ILAKLPPKGKLR 527
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 528 SLCSQHVERLQIFQ 541
>gi|396095756|gb|AFN85443.1| peroxisome proliferator-activated receptor alpha [Columba livia]
Length = 468
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTGENY-----VEDSEMADLKSLAKRIHVAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARIILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ +V EFAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 278 CTSVETVTEVTEFAKSIPGFSSLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|198466632|ref|XP_001354071.2| GA14768 [Drosophila pseudoobscura pseudoobscura]
gi|198150690|gb|EAL29809.2| GA14768 [Drosophila pseudoobscura pseudoobscura]
Length = 897
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 647 VIVCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIATTVA-------ESLEFQKIWLWQ 698
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 699 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 757
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 758 -DGAYLTRQQLEILYDTDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRTGLSEPK 816
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 817 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRM 873
>gi|402856160|ref|XP_003892665.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Papio anubis]
Length = 518
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHMERLQIFQ 487
>gi|449273309|gb|EMC82832.1| Peroxisome proliferator-activated receptor alpha, partial [Columba
livia]
Length = 469
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 169 HNA-IRFGRMPRSEKAKLKAEILTGENY-----VEDSEMADLKSLAKRIHVAYLKN--FN 220
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 221 MNKVKARIILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 278
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ +V EFAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 279 CTSVETVTEVTEFAKSIPGFSSLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 337
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 338 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 397
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 398 IEKMQESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 457
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 458 HPLLQEIY 465
>gi|119573790|gb|EAW53405.1| RAR-related orphan receptor C, isoform CRA_a [Homo sapiens]
gi|119573791|gb|EAW53406.1| RAR-related orphan receptor C, isoform CRA_a [Homo sapiens]
Length = 574
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 315 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 362
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 363 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 416
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 417 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 475
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 476 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 529
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 530 SLCSQHVERLQIFQ 543
>gi|113205560|ref|NP_001037991.1| peroxisome proliferator-activated receptor alpha [Sus scrofa]
gi|90823207|gb|ABE01105.1| peroxisome proliferator-activated receptor alpha [Sus scrofa]
Length = 468
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDAETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D+++ LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDLSLFVAAIIWCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+ERM+ + ++L L NHP+ + L +L+ L DLR L H++ + + TE L
Sbjct: 397 IERMQEGIVHVLKLHLQTNHPDDVFLFPKLLQKLADLRQLVTEHAQLVQVIKKTEADAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|410965830|ref|XP_003989443.1| PREDICTED: peroxisome proliferator-activated receptor alpha [Felis
catus]
Length = 468
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDPEDAETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKANNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQSNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|335286925|ref|XP_003355219.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Sus scrofa]
Length = 497
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + + T +A A L + + ++ V +++ DTC ++E +LR+ S +
Sbjct: 232 SPSFRSTPEAPYASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNI 278
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 279 FSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 338
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI
Sbjct: 339 VVLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSALRFSEDEIA 397
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DL 280
L++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP L
Sbjct: 398 LYTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQG------ILAKLPPKGKL 451
Query: 281 RTLNQLHSEKLVAFQ 295
R+L H EKL FQ
Sbjct: 452 RSLCSQHVEKLQTFQ 466
>gi|402856162|ref|XP_003892666.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Papio anubis]
Length = 497
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHMERLQIFQ 466
>gi|19743909|ref|NP_005051.2| nuclear receptor ROR-gamma isoform a [Homo sapiens]
gi|49066040|sp|P51449.2|RORG_HUMAN RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|21594880|gb|AAH31554.1| RAR-related orphan receptor C [Homo sapiens]
gi|48146989|emb|CAG33717.1| RORC [Homo sapiens]
gi|83405146|gb|AAI10572.1| RAR-related orphan receptor C [Homo sapiens]
gi|123979804|gb|ABM81731.1| RAR-related orphan receptor C [synthetic construct]
gi|123994569|gb|ABM84886.1| RAR-related orphan receptor C [synthetic construct]
Length = 518
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHVERLQIFQ 487
>gi|62897835|dbj|BAD96857.1| RAR-related orphan receptor C isoform a variant [Homo sapiens]
Length = 518
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 33/260 (12%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTA 98
S + T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 253 SPGFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--- 306
Query: 99 CPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLK 158
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLK
Sbjct: 307 ------------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLK 354
Query: 159 AGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLS 218
AG EV+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S
Sbjct: 355 AGAMEVVLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFS 413
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
+ EI L++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP
Sbjct: 414 EDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLP 467
Query: 279 ---DLRTLNQLHSEKLVAFQ 295
LR+L H E+L FQ
Sbjct: 468 PKGKLRSLCSQHVERLQIFQ 487
>gi|189055044|dbj|BAG38028.1| unnamed protein product [Homo sapiens]
Length = 518
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHVERLQIFQ 487
>gi|397492738|ref|XP_003817277.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan paniscus]
Length = 572
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 313 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 360
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 361 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 414
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 415 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 473
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 474 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 527
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 528 NLCSQHVERLQIFQ 541
>gi|197102124|ref|NP_001125682.1| nuclear receptor ROR-gamma [Pongo abelii]
gi|75061866|sp|Q5RAP4.1|RORG_PONAB RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|55728856|emb|CAH91166.1| hypothetical protein [Pongo abelii]
Length = 518
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAVEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAYRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHVERLQIFQ 487
>gi|332810309|ref|XP_003308439.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan troglodytes]
Length = 572
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 313 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 360
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 361 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 414
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 415 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 473
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 474 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 527
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 528 NLCSQHVERLQIFQ 541
>gi|297279993|ref|XP_002801827.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 4 [Macaca
mulatta]
Length = 497
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHVERLQIFQ 466
>gi|334326740|ref|XP_001371708.2| PREDICTED: nuclear receptor ROR-beta-like [Monodelphis domestica]
Length = 663
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 132/248 (53%), Gaps = 18/248 (7%)
Query: 49 CTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLN 108
C+ K L L +R+ V+R+H +TC +T ++++ + +H C N
Sbjct: 405 CSYKGL---LSPTERVAQNVIRSHRETCQYTTEELKRL--AWAQHTQEELC--------N 451
Query: 109 PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
+ P + L Q S + S I+ VVEFAKRI GF L +DQ+ LLKAG EVLL+R
Sbjct: 452 LQAKPCE---VLWQQCSLQISHAIQFVVEFAKRICGFMDLDQNDQIILLKAGCLEVLLIR 508
Query: 169 LACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ +F+ N+++ +G+ + L+ ++F+ L L LSD EI LF++
Sbjct: 509 MVRVFNPLNNTVL-FDGKFGGIQMFKALACDDLIGAIFELERGLCRLQLSDEEIALFTAA 567
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
V++SP R L + V+ ++ ++ L H + Q P + ++LIS LP L+T+ +LH
Sbjct: 568 VLLSPDRPWLLEAKKVQNLQDQIFLALQHEI-QKQPSPEDRLSKLISKLPLLKTICRLHL 626
Query: 289 EKLVAFQM 296
+KL F++
Sbjct: 627 DKLECFRL 634
>gi|426331479|ref|XP_004026708.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Gorilla gorilla
gorilla]
Length = 518
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQT------ILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHVERLQIFQ 487
>gi|301629282|ref|XP_002943772.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Xenopus (Silurana) tropicalis]
Length = 302
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 139/291 (47%), Gaps = 23/291 (7%)
Query: 22 APVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLST-VVRAHLDTCAFTA 80
+ +RFGR+P+ EK ++LA + + E A +QR+L+ + ++L + T
Sbjct: 4 SAIRFGRMPQAEKEKLLAEISSDIDQLNPESA-------DQRVLAKHLYDSYLKSFPLTK 56
Query: 81 DKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----------LLQDFSERFS 129
K +L R T L ++GQ + + Q R
Sbjct: 57 AKARAILT-GRATDTLQPVVIYDMNSLMMGEDQIKGQCQAPEQNKEVAIRIFQRCQSRSV 115
Query: 130 PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV 189
+R++ EFAK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 116 EAVREITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIFTMLASLMN-KDGVLIAEGQGFMT 174
Query: 190 RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
R+ + S F M+ F+FA R NGL L D+++ +F +++++S R GL N +E +
Sbjct: 175 REFLKSLRKPFSDFMEPKFEFAIRFNGLELDDSDLAIFIAVIILSGDRPGLLNVGPIEEI 234
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+G L L L NHP+ L A+L+ + DLR + H + L + TE
Sbjct: 235 QGSLLQALELQLKLNHPDSAQLFAKLLQKMTDLRQVVTEHVQLLQLIKKTE 285
>gi|324519659|gb|ADY47446.1| Nuclear hormone receptor E75, partial [Ascaris suum]
Length = 364
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 41/276 (14%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKAR++ M +++ + AL AEL+DE +L A T A T +
Sbjct: 6 VRFGRVPKREKARLVEEMARASARSLID-ALVAELEDEGAVLEAC-DAAFATLAHTVNTY 63
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
YT + + CPL S + PT++ VVEF+ IP
Sbjct: 64 A-------SGNNYT---TDIRCPLR----------------SSGYLPTLKAVVEFSTSIP 97
Query: 144 GFSLLCHDDQVTLLKAGVFE-VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLM 202
GF L+ D+V LLK VF+ VLL L F + S + G V RF
Sbjct: 98 GFHLIFQQDRVQLLKGSVFQAVLLAMLPARFCASVASSFLMTGRV------SGELGRFFT 151
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMH--VLN 260
DS+ DF +R L LS+ ++GL ++ + P L+ L + +L L+H +L
Sbjct: 152 DSLIDFVQRFRQLALSERQLGLLCALAICYPEGISLQQPSLAHALHERL-CWLLHSSLLA 210
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+++ +++ L DLRTL+ LH EKL A +
Sbjct: 211 TRGAASVHV---VLTALTDLRTLHTLHQEKLQAIRF 243
>gi|158299692|ref|XP_319750.4| AGAP009002-PA [Anopheles gambiae str. PEST]
gi|157013639|gb|EAA14853.4| AGAP009002-PA [Anopheles gambiae str. PEST]
Length = 639
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 154/311 (49%), Gaps = 30/311 (9%)
Query: 17 ARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTC 76
AR + V GR+ R R+ + ++ + C+ L+AE D ++ T+ AH +T
Sbjct: 345 ARLRSHRVVPGRMVLRTPHRLTITITRTRRSLCSFLLLSAEGDINDVLIKTLAEAHANT- 403
Query: 77 AFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVV 136
+ + M R+ ++ S L N Q+EL D +E+ + I+ ++
Sbjct: 404 NHKLEIVHEMFRKPQD-------VSRLLYYKN------MTQEELWLDCAEKLTAMIQQII 450
Query: 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS 196
EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D TNS+ L G++++ +
Sbjct: 451 EFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLMDLSTNSV--LYGDIMLPQEAFYT 508
Query: 197 NARF---LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
+ F L+ +F+ A+ + L L++TE+ L+ S+V++ P R+G+R ++R L N
Sbjct: 509 SDSFEMKLVACIFETAKSITELKLTETELALYQSLVLLWPERNGVRGNTEIQR----LFN 564
Query: 254 MLMHVLNQ----NHP---EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
M M + Q NH + + L++ +P R L+ +H E L F+ Q A
Sbjct: 565 MSMSAIRQEIEANHAPLKGDVTVLDTLLNKIPTFRELSIMHMEALQKFKQDHPQYVFPAL 624
Query: 307 QQQWHGEDNSK 317
++ D+ +
Sbjct: 625 YKELFSIDSQQ 635
>gi|307183686|gb|EFN70389.1| Probable nuclear hormone receptor HR3 [Camponotus floridanus]
Length = 416
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 135/256 (52%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + D+I+ R+ ++ + G ++L + ++
Sbjct: 176 TIADAHARTCLVSTDQIQESFRKPADYNKLI-------------YYKDMGHEQLWLECAQ 222
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N + L G+
Sbjct: 223 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQNCV--LYGD 280
Query: 187 VLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+L+ +++ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 281 ILLPQEAFYTTDTAEMKLVSYVFELARSIAELKLTETELALYSAAVLLSPDRPGLKCLGD 340
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ + L L++NH + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 341 INRLSQAVIRALRSELDRNHMTPIKGDVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 400
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 401 HLEFPALHKELFSVDS 416
>gi|193783650|dbj|BAG53561.1| unnamed protein product [Homo sapiens]
Length = 497
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHVERLQIFQ 466
>gi|410905381|ref|XP_003966170.1| PREDICTED: nuclear receptor ROR-alpha-like [Takifugu rubripes]
Length = 494
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 130/233 (55%), Gaps = 20/233 (8%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRR--AREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+ +++VRAH +T + ++++ + + +RE ++ ++ E+
Sbjct: 248 LCASIVRAHRETSQYRVEELQVLRWKLFSRE---------------EIQAYQIKSVDEMW 292
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + R + ++ VVEFAK IPGF +L +DQ+ LLK G EV+LVR++ F+++ N++
Sbjct: 293 QHCALRLTDAVQYVVEFAKHIPGFRMLTQNDQIALLKTGSMEVVLVRMSRFFNTENNTVF 352
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ D S L+ ++FDFA + L LS+ ++ LFS++V+I+ R L ++
Sbjct: 353 -FDGKFARADLFKSLACGDLITAVFDFAHDMCALKLSEHQLALFSALVLINTDRPCLEDR 411
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAF 294
V+R++ +E L ++L +++ E +L +L + LR+L LH EKL F
Sbjct: 412 GKVQRVQRTVELGLRYILQRDNQE--SLMHKLYQKMAVLRSLCSLHMEKLRWF 462
>gi|324505790|gb|ADY42483.1| Nuclear hormone receptor E75 [Ascaris suum]
Length = 523
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 41/276 (14%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKAR++ M +++ + AL AEL+DE +L A T A T +
Sbjct: 165 VRFGRVPKREKARLVEEMARASARSLID-ALVAELEDEGAVLEAC-DAAFATLAHTVNTY 222
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
YT + + CPL S + PT++ VVEF+ IP
Sbjct: 223 A-------SGNNYT---TDIRCPLR----------------SSGYLPTLKAVVEFSTSIP 256
Query: 144 GFSLLCHDDQVTLLKAGVFE-VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLM 202
GF L+ D+V LLK VF+ VLL L F + S + G V RF
Sbjct: 257 GFHLIFQQDRVQLLKGSVFQAVLLAMLPARFCASVASSFLMTGRV------SGELGRFFT 310
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMH--VLN 260
DS+ DF +R L LS+ ++GL ++ + P L+ L + +L L+H +L
Sbjct: 311 DSLIDFVQRFRQLALSERQLGLLCALAICYPEGISLQQPSLAHALHERL-CWLLHSSLLA 369
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+++ +++ L DLRTL+ LH EKL A +
Sbjct: 370 TRGAASVHV---VLTALTDLRTLHTLHQEKLQAIRF 402
>gi|348526994|ref|XP_003451004.1| PREDICTED: nuclear receptor ROR-alpha-like [Oreochromis niloticus]
Length = 493
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 22/234 (9%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPM---LRRAREHPTYTACPSTLACPLNPNSHPLQGQQEL 120
+ +++VR+H +T + ++++ + L E TY + + E+
Sbjct: 247 LCASIVRSHRETSQYRVEELQALRWKLFSREEIQTYQS----------------KSVDEM 290
Query: 121 LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180
Q + R + ++ VVEFAK IPGF +L +DQ+ LLK G EV+LVR++ F+++ N++
Sbjct: 291 WQHCAIRLTDAVQFVVEFAKHIPGFRMLSQNDQIALLKTGSMEVVLVRMSRFFNTENNTV 350
Query: 181 ICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
+G+ + S L+ ++FDFA + L L++ +I LFS++V+I+ R L +
Sbjct: 351 F-FDGKFAGTEVFKSLACGDLIAAVFDFAHGMCALKLTEQQIALFSALVLINADRPCLED 409
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAF 294
+ V+R++ +E L H+L++++ E +L +L + LR+L LH EKL F
Sbjct: 410 RGKVQRVQRSVELGLTHILHRDNQE--SLMHKLYQRMAVLRSLCSLHMEKLRWF 461
>gi|218156236|dbj|BAH03350.1| retinoic acid receptor 3 [Mordacia mordax]
Length = 407
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I VEFAKRIPGFS L DDQ+TLLKA ++L++R+ + + ++
Sbjct: 133 LWDKFSELSTKCIVKTVEFAKRIPGFSTLGIDDQITLLKAACLDILILRICTRYTPEHDT 192
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL SSI +I+ R L
Sbjct: 193 MTFSDGLTLNRTQMHNAGFGPLTDLVFAFAAQLLPLEMDDTEAGLLSSICLITGDRPELE 252
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ E V+R++ L L + + P + ++ +++ + DLR ++ S++++ +M
Sbjct: 253 HPERVDRLQEPLLEALKFYVRKRRPTKPHMFPKILMKITDLRGISSKGSDRVITLKM 309
>gi|48255918|ref|NP_001001523.1| nuclear receptor ROR-gamma isoform b [Homo sapiens]
gi|21739737|emb|CAD38900.1| hypothetical protein [Homo sapiens]
gi|117646452|emb|CAL38693.1| hypothetical protein [synthetic construct]
gi|325495479|gb|ADZ17345.1| RAR-related orphan nuclear receptor variant 2 [Homo sapiens]
Length = 497
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHVERLQIFQ 466
>gi|308818236|gb|ADO51078.1| MIP25931p [Drosophila melanogaster]
Length = 313
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 12/231 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
++ V +AH C++T + ++RR P ST+A L + L Q
Sbjct: 88 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVAESLEFQ------KIWLWQQ 140
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 141 FSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD-- 198
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL ++
Sbjct: 199 DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPKV 258
Query: 244 VERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
+ R R + E + + +L P+ + L L + +P+LR+L H L
Sbjct: 259 IGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHL 309
>gi|431896654|gb|ELK06066.1| Nuclear receptor ROR-gamma [Pteropus alecto]
Length = 771
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 568 EMWERCARRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 626
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L LS+ EI L++++V+I+ SR GL
Sbjct: 627 HTVFFEGKYGGVELFRALGCGELISSIFDFSRSLSALRLSEDEIALYTALVLINASRPGL 686
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H EKL FQ
Sbjct: 687 QEKRKVEQLQYNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQTFQ 740
>gi|117646568|emb|CAL38751.1| hypothetical protein [synthetic construct]
Length = 497
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHVERLQIFQ 466
>gi|332810303|ref|XP_003308436.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan troglodytes]
Length = 518
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 474 NLCSQHVERLQIFQ 487
>gi|426331477|ref|XP_004026707.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 497
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQT------ILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHVERLQIFQ 466
>gi|397492734|ref|XP_003817275.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan paniscus]
Length = 518
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 474 NLCSQHVERLQIFQ 487
>gi|296489562|tpg|DAA31675.1| TPA: RAR-related orphan receptor C [Bos taurus]
Length = 506
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 35/243 (14%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ V +++ DTC ++E +LR+ S + + +
Sbjct: 265 ASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNIFSREEVAGYQRK 311
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ +++
Sbjct: 312 SMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNA 371
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
D++ L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 372 DN-------------DTVFFEGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANR 418
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H EKL
Sbjct: 419 PGLQEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQ 472
Query: 293 AFQ 295
FQ
Sbjct: 473 TFQ 475
>gi|195333057|ref|XP_002033208.1| GM20545 [Drosophila sechellia]
gi|194125178|gb|EDW47221.1| GM20545 [Drosophila sechellia]
Length = 845
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 637 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 696
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 697 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 754
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 755 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 814
Query: 290 KLVAFQM 296
L F++
Sbjct: 815 SLSKFKL 821
>gi|134085669|ref|NP_001076920.1| nuclear receptor ROR-gamma [Bos taurus]
gi|126513271|gb|ABO15740.1| RAR-related orphan receptor C [Bos taurus]
Length = 506
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 35/243 (14%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ V +++ DTC ++E +LR+ S + + +
Sbjct: 265 ASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNIFSREEVAGYQRK 311
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ +++
Sbjct: 312 SMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNA 371
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
D++ L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 372 DN-------------DTVFFEGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANR 418
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H EKL
Sbjct: 419 PGLQEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQ 472
Query: 293 AFQ 295
FQ
Sbjct: 473 TFQ 475
>gi|301774943|ref|XP_002922885.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
[Ailuropoda melanoleuca]
gi|281348935|gb|EFB24519.1| hypothetical protein PANDA_011925 [Ailuropoda melanoleuca]
Length = 468
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 153/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHEPEDAETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D+++ LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDLSLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQTNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|320543744|ref|NP_788302.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
gi|318068560|gb|AAO41454.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
Length = 874
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 666 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 725
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 726 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 783
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 784 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 843
Query: 290 KLVAFQM 296
L F++
Sbjct: 844 SLSKFKL 850
>gi|332810305|ref|XP_003308437.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan troglodytes]
gi|397492732|ref|XP_003817274.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan paniscus]
Length = 497
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 453 NLCSQHVERLQIFQ 466
>gi|383420559|gb|AFH33493.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 23/249 (9%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNIFSREEV 284
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 285 IGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM 344
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V
Sbjct: 345 -CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALV 403
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQL 286
+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L
Sbjct: 404 LINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQ 457
Query: 287 HSEKLVAFQ 295
H E+L FQ
Sbjct: 458 HVERLQIFQ 466
>gi|332220315|ref|XP_003259302.1| PREDICTED: nuclear receptor ROR-gamma [Nomascus leucogenys]
Length = 497
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 238 TLEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 285
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 286 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 339
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 340 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 398
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 399 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 452
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 453 SLCSQHVERLQIFQ 466
>gi|344275191|ref|XP_003409397.1| PREDICTED: nuclear receptor ROR-gamma-like [Loxodonta africana]
Length = 752
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 549 EMWERCAHRLTEAIQYVVEFAKRLAGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 607
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ ++FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 608 HTVFFEGKYGGVELFRALGCSELISAIFDFSHSLSALRFSEDEIALYTALVLINANRPGL 667
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + + AEL LR+L H EKL FQ
Sbjct: 668 QEKRKVEQLQYNLELAFHHHLCKTH--RQGILAELPPK-GKLRSLCSQHVEKLQTFQ 721
>gi|383420563|gb|AFH33495.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 23/249 (9%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNIFSREEV 284
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 285 IGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM 344
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V
Sbjct: 345 -CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALV 403
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQL 286
+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L
Sbjct: 404 LINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQ 457
Query: 287 HSEKLVAFQ 295
H E+L FQ
Sbjct: 458 HVERLQIFQ 466
>gi|378705842|gb|AFC34773.1| RORgamma1 [Ctenopharyngodon idella]
Length = 479
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ VV++H++T +++++++ + TL P + + + L
Sbjct: 231 ERITQNVVKSHIETSQYSSEELKRL-------------AWTLYTPEEIRVYQNKSTELLW 277
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + I+ VVEFAKRI GF LC +DQ+ LLKAG +VLL+R+ ++ N+++
Sbjct: 278 QQCAVHITNAIQYVVEFAKRISGFMDLCQNDQIILLKAGCLDVLLIRMCRAYNPINNTLL 337
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ + L+ ++F+ A+ L+ L LS+ E+ LF++ V++SP R L +
Sbjct: 338 -FDGKFTSPQLFKALGCDDLVSAVFEMAKTLSRLQLSEKEMALFTATVLLSPDRPWLTDA 396
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ K+ L H L+++ + L A+++S LP +++++ LH +KL F++
Sbjct: 397 QKVKKLQEKVYVALQHCLHKSGAHEEKL-AKMLSKLPMMKSISNLHIDKLEFFRL 450
>gi|354501844|ref|XP_003512998.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Cricetulus
griseus]
Length = 521
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 268 ASLTDIEYLVQNVCKSYRETCQL---QVEDLLRQRTNLFSREEVT--------------- 309
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 310 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM- 368
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 369 CRAYNPDNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALRFSEDEIALYTALVL 428
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 429 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 482
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 483 VEKLQIFQ 490
>gi|5923996|emb|CAB56529.1| peroxisome proliferator activated receptor [Crocodylus niloticus]
Length = 328
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 152/310 (49%), Gaps = 27/310 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 28 HNA-IRFGRMPRSEKAKLKAEILTGENY-----VEDSEMADLKSLAKQIYEAYLKN--FN 79
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 80 MNKVKARVILAGKTSNDPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 137
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + LA + + + NG
Sbjct: 138 CTSVETVTELTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKDGMPVAYGNG 197
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 198 -FITREFLKSLRKPFCDIMEPKFDFAMKFNSLELDDSDISLFVAAIICCGDRPGLVNVGH 256
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 257 IEKMQESIVHVLKLHLQNNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 316
Query: 304 AAQQQQWHGE 313
Q+ + +
Sbjct: 317 HPLLQEIYKD 326
>gi|47825377|ref|NP_001001464.1| peroxisome proliferator-activated receptor alpha [Gallus gallus]
gi|8886489|gb|AAF80479.1|AF163809_1 peroxisome proliferator-activated receptor alpha [Gallus gallus]
gi|19110865|gb|AAL85322.1| peroxisome proliferator-activated receptor alpha [Gallus gallus]
Length = 468
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTGENY-----VEDSEMADLKSLAKRIHDAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|291397992|ref|XP_002715400.1| PREDICTED: RAR-related orphan receptor C [Oryctolagus cuniculus]
Length = 502
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 243 TPEAPYASLTEIEHLVQNVCKSYRETCQL---RLEDLLRQRSNVFSREEVT--------- 290
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ Q E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 291 ------GYQRQSVWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 344
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI L
Sbjct: 345 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSALRFSEDEIAL 403
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ SR GL+ + VE+++ LE H L + H + +++ LP LR
Sbjct: 404 YTALVLINASRPGLQERRKVEQLQSNLELAFHHHLCKTHRQG------ILAKLPPKGRLR 457
Query: 282 TLNQLHSEKLVAFQ 295
+L H EKL FQ
Sbjct: 458 SLCSQHVEKLQIFQ 471
>gi|262358091|gb|ACY56690.1| HR3 nuclear receptor [Daphnia magna]
Length = 622
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 30/243 (12%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+ T+ AH TC F+ + I MLR+ P ++ + + Q+EL +
Sbjct: 379 LAKTIGDAHSRTCLFSGEHIADMLRK----------PQDIS---KVHYYKNMAQEELWLE 425
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
++R + I+ ++EFAK +PGF L DDQ+ LLK G FE+ ++R++ +D N++ L
Sbjct: 426 CAQRLTAVIQQIIEFAKMVPGFMKLSQDDQIVLLKTGSFELAVLRMSRYYDLSQNAV--L 483
Query: 184 NGEVLV-------RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
G+ L+ DS+ + L+ S+FDFA+ L L LS+ ++ L+S+ V++S R
Sbjct: 484 FGDTLLPVEAFLTPDSVEAK----LVSSVFDFAKSLAELKLSEIQLALYSAFVLLSSDRM 539
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLV 292
GLR ++R+ + L L++ H +++ L + LP LR ++ LH E L
Sbjct: 540 GLRGTLEIQRLGQAVLRALRLELSRTHRTPLKGDISVADSLAARLPALREISGLHMEALA 599
Query: 293 AFQ 295
F+
Sbjct: 600 RFK 602
>gi|7144508|gb|AAA19976.2| truncated nuclear hormone receptor superfamily protein [Drosophila
melanogaster]
Length = 390
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 19/234 (8%)
Query: 76 CAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRD 134
C++T + ++RR P ST+A L+ Q+ L Q FS R +P ++
Sbjct: 153 CSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQQFSARVTPGVQR 204
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR--DS 192
+VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++ +G L R +
Sbjct: 205 IVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD--DGAYLTRQLEI 262
Query: 193 IHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKL- 251
++ S+ ++++ +FA LN LSDTEIGLFS++V+++ R+GL +++ R R +
Sbjct: 263 LYDSD---FVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPKVIGRARELVA 319
Query: 252 ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
E + + +L P+ + L L + +P+LR+L H L +M + +L
Sbjct: 320 EALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWTKLRL 373
>gi|442623145|ref|NP_001260854.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
gi|440214256|gb|AGB93387.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
Length = 529
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 121/216 (56%), Gaps = 24/216 (11%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQM----------------TEQQQQLAAQQQQ 309
L F++ + QQ L Q+QQ
Sbjct: 457 SLSKFKLQHPNVVFPALYKELFSIDSQQDLTXQEQQ 492
>gi|383861783|ref|XP_003706364.1| PREDICTED: probable nuclear hormone receptor HR3-like [Megachile
rotundata]
Length = 521
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 135/256 (52%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + ++I+ R+ P L+ + + ++L + ++
Sbjct: 281 TIADAHARTCLLSTEQIQESFRK----------PHDLSRLIYYKN---MAHEQLWLECAQ 327
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N + L GE
Sbjct: 328 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQNCV--LYGE 385
Query: 187 VLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 386 TMLPQDAFYTTDTAEMKLVSCVFELARSIAELKLTETELALYSAAVLLSPDRPGLKGLAE 445
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ + L L++NH + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 446 ITRLSQAVIRALRSELDRNHVSPIKGDVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 505
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 506 HLEFPALHKELFSVDS 521
>gi|241568020|ref|XP_002402389.1| hormone receptor hr3, putative [Ixodes scapularis]
gi|215501998|gb|EEC11492.1| hormone receptor hr3, putative [Ixodes scapularis]
Length = 397
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 132/252 (52%), Gaps = 29/252 (11%)
Query: 53 ALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH 112
+LA+ LD + TV AH TC +T + I+ + R+ PL+ +
Sbjct: 146 SLASHLD---LLAKTVSDAHSRTCLYTTEHIQDLTRK----------------PLDISRV 186
Query: 113 PL---QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
L +EL D +++ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R+
Sbjct: 187 MLYKNMAHEELWLDCAQKLTQVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELCVLRM 246
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSS 227
+ FD T ++ N +L D+ + L+++ F+F + + L++TE+ L+S+
Sbjct: 247 SRYFDVPTG-LVLYNDSLLPMDAFITQETLEIKLVNNAFNFVRSIAEMKLTETELALYSA 305
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPE----QMNLCAELISMLPDLRTL 283
V+++P R GL+ + R+ + L + L++ H + +++ L++ LP LR +
Sbjct: 306 YVLLAPDRPGLKGVPEITRLSTAILKSLRYELDKTHEQPYKGDVSVFDSLVAKLPSLREV 365
Query: 284 NQLHSEKLVAFQ 295
+ LH + L F+
Sbjct: 366 SLLHMDALAKFR 377
>gi|363742965|ref|XP_003642756.1| PREDICTED: nuclear receptor ROR-gamma-like [Gallus gallus]
Length = 437
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 23/235 (9%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+ +V+ +H +TC A++++ LRR C P +E+ Q
Sbjct: 194 LTQSVLASHRETCQLRAEELQ--LRRGETFSREEVCAFQKKPP-----------EEMWQR 240
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
+ R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ F+ N +
Sbjct: 241 CACRLTEAIQRVVEFAKRLRGFMELCQNDQIVLLKAGAMEVVLVRMCRAFNPD-NRTVFF 299
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
G+ + S L+ S+FDFA+ L L S+ E+ LFS+IV+++ +R L++
Sbjct: 300 EGKYAGAELFRSLGCPELIGSIFDFAQNLCALRFSEGEVALFSAIVLVNATRPLLQDPGK 359
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
V R++G+LE +L + E L++ LP LR L H E+L F+
Sbjct: 360 VARLQGRLEVAFRLLLRRTQREG------LLARLPPLGRLRALCSQHVEQLQTFR 408
>gi|354501846|ref|XP_003512999.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Cricetulus
griseus]
Length = 500
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 247 ASLTDIEYLVQNVCKSYRETCQL---QVEDLLRQRTNLFSREEVT--------------- 288
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 289 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM- 347
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 348 CRAYNPDNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALRFSEDEIALYTALVL 407
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 408 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 461
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 462 VEKLQIFQ 469
>gi|195428126|ref|XP_002062125.1| GK16819 [Drosophila willistoni]
gi|194158210|gb|EDW73111.1| GK16819 [Drosophila willistoni]
Length = 1021
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 771 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIATTVA-------ESLEFQKIWLWQ 822
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 823 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 881
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 882 -DGAYLTRQQLEILYDTDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 940
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L + + + L L + +P+LR+L H L +M
Sbjct: 941 VIGRARELVAEALRVQILRSRASSTQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 1000
Query: 300 QQQL 303
+ +L
Sbjct: 1001 KLRL 1004
>gi|114049537|emb|CAJ90622.1| HR3 isoform B1 [Blattella germanica]
Length = 651
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 124/235 (52%), Gaps = 20/235 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC FT + I M R+ P L+ L + +EL + ++
Sbjct: 411 TIADAHARTCLFTTEHIHEMFRK----------PQDLSKLLYYKN---MAHEELWLECAQ 457
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ FD N ++ +
Sbjct: 458 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYFDLSQNCVLYAD-T 516
Query: 187 VLVRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+L +D+ +++ L+ +F+FA+ + L L++TE+ L+S+ V++S R GL+ +
Sbjct: 517 MLPQDAFYTTETAEMKLVTCVFEFAKGVAELKLTETELALYSACVLLSADRPGLKGLAEI 576
Query: 245 ERMRGKLENMLMHVLNQNHP----EQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
R+ + L L +NH + + L++ +P LR L+ LH + L F+
Sbjct: 577 GRLSQAVLRALRIELERNHAIPIKGDVTVYDALLAKVPTLRELSMLHMDALAKFK 631
>gi|395513258|ref|XP_003760844.1| PREDICTED: nuclear receptor ROR-beta-like [Sarcophilus harrisii]
Length = 334
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 131/246 (53%), Gaps = 15/246 (6%)
Query: 51 EKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPN 110
+K LA + ++R+ V+R+H +TC +T ++++ R A T S A P
Sbjct: 75 QKCLALGMSRDERVAQNVIRSHRETCQYTTEELK---RLAWAQYTQEELCSLQAKPC--- 128
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
+ L Q S + S I+ VVEFAKRI GF L +DQ+ LLKAG EVLL+R+
Sbjct: 129 -------EVLWQQCSLQISHAIQFVVEFAKRICGFMDLDQNDQIILLKAGCLEVLLIRMV 181
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
+F+ N+++ +G+ + L+ ++F+ L L LSD EI LF++ V+
Sbjct: 182 RVFNPLNNTVL-FDGKFGGMQMFKALACDDLIGAIFELERGLCRLQLSDEEIALFTAAVL 240
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEK 290
+SP R L + V+ ++ ++ L H + Q P + ++LIS LP L+ + +LH +K
Sbjct: 241 LSPDRPWLLEAKKVQNLQDQVFLALQHEI-QKQPSPEDRLSKLISKLPLLKAICRLHLDK 299
Query: 291 LVAFQM 296
L F++
Sbjct: 300 LECFRL 305
>gi|427789789|gb|JAA60346.1| Putative hormone receptor-like in 46 [Rhipicephalus pulchellus]
Length = 388
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 135/254 (53%), Gaps = 29/254 (11%)
Query: 53 ALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH 112
+LA+ LD + TV AH TC ++ ++I+ + R+ PL+ +
Sbjct: 137 SLASHLD---LLAKTVSDAHNRTCLYSTEQIQELTRK----------------PLDISRV 177
Query: 113 PL---QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
L +EL D +++ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R+
Sbjct: 178 MLYKNMAHEELWLDCAQKLTQIIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELCILRM 237
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSS 227
+ FD T S + N +L D+ + + L+++ F+F + + L++TE+ L+S+
Sbjct: 238 SRYFDVATGS-VLYNDSLLPMDAFITQETQEIKLVNNAFNFVRSIAEMKLTETELALYSA 296
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH--PEQMNLCAE--LISMLPDLRTL 283
V+++P R GL+ ++R+ + L + L + H P + ++ A L++ L LR +
Sbjct: 297 YVLLAPDRPGLKGISEIQRLNAAILKSLRYELGKTHEQPYKGDVSAFDCLLAKLSSLREV 356
Query: 284 NQLHSEKLVAFQMT 297
+ LH + L F+ T
Sbjct: 357 SLLHMDALAKFRRT 370
>gi|146331798|gb|ABQ22405.1| orphan nuclear receptor NR1D1-like protein [Callithrix jacchus]
Length = 146
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 97/146 (66%)
Query: 154 VTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLN 213
VTLLKAG FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN
Sbjct: 1 VTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLN 60
Query: 214 GLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAEL 273
L L++ E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L
Sbjct: 61 SLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKL 120
Query: 274 ISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ LPDLRTLN +HSEKL++F++ Q
Sbjct: 121 LLKLPDLRTLNNMHSEKLLSFRVDAQ 146
>gi|224095830|ref|XP_002187790.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Taeniopygia guttata]
Length = 468
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTVENY-----VEDSEMADLKSLAKRIHDAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARIILAGKANNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSSLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALDLDDSDISLFVAAIICCGDRPGLVNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQESIVHVLKLHLQNNHPDDTFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|114049535|emb|CAJ90621.1| HR3 isoform A [Blattella germanica]
Length = 607
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 124/235 (52%), Gaps = 20/235 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC FT + I M R+ P L+ L + +EL + ++
Sbjct: 367 TIADAHARTCLFTTEHIHEMFRK----------PQDLSKLLYYKN---MAHEELWLECAQ 413
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ FD N ++ +
Sbjct: 414 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYFDLSQNCVLYAD-T 472
Query: 187 VLVRDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+L +D+ +++ L+ +F+FA+ + L L++TE+ L+S+ V++S R GL+ +
Sbjct: 473 MLPQDAFYTTETAEMKLVTCVFEFAKGVAELKLTETELALYSACVLLSADRPGLKGLAEI 532
Query: 245 ERMRGKLENMLMHVLNQNHP----EQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
R+ + L L +NH + + L++ +P LR L+ LH + L F+
Sbjct: 533 GRLSQAVLRALRIELERNHAIPIKGDVTVYDALLAKVPTLRELSMLHMDALAKFK 587
>gi|410968382|ref|XP_003990686.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Felis catus]
Length = 518
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 315 EMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 373
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 374 HTVFFEGKYGGTELFRALGCGELISSIFDFSHSLSTLRFSEDEIALYTALVLINANRPGL 433
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H EKL FQ
Sbjct: 434 QEKRKVEQLQHNLELAFHHHLYKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQTFQ 487
>gi|327273367|ref|XP_003221452.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
[Anolis carolinensis]
Length = 478
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C E + E+ D + + + A+L F
Sbjct: 178 HNA-IRFGRMPRSEKAKLKAEVL--IGEHCRENS---EVADLKSLAKRIYEAYLKN--FN 229
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDFSERF 128
+K++ L A + H T C + TL L N +Q ++ ++ F
Sbjct: 230 MNKVKARLILAGKTSNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 287
Query: 129 SPTIRDVVE---FAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
++ V E FAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 288 CTSVEAVTELTEFAKSIPGFSSLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 346
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + + R GL N
Sbjct: 347 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAATICCGDRPGLVNIRH 406
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 407 IEKMQESIVHVLKLHLQNNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 466
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 467 HPLLQEIY 474
>gi|294854043|gb|ADF43963.1| retinoic acid receptor [Lymnaea stagnalis]
Length = 478
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L + +E S I +V+FAK+IPGF L DQ+TLLKA E++++R++ ++ T++
Sbjct: 279 LWEKITELSSAGIVMIVDFAKKIPGFLSLSTSDQITLLKAACLEIMILRISIRYELDTDT 338
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M NG L R+ + L ++F FA L ++ +TE + SSI +IS RSGL
Sbjct: 339 MQFSNGLSLTREQLQRGGFGPLTSTIFSFAASLKRMNCDETEYAMLSSICLISGDRSGLH 398
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ E +E+M+ L L H + P+Q + A+++ L DLR+++ +EK++ ++ E+
Sbjct: 399 DTEKIEQMQEPLLEALKHYIRSRRPDQKHTFAKMLMKLTDLRSISVKGAEKVLHLRL-ER 457
Query: 300 QQQL 303
QL
Sbjct: 458 YAQL 461
>gi|241632867|ref|XP_002410392.1| nuclear receptor, putative [Ixodes scapularis]
gi|215503411|gb|EEC12905.1| nuclear receptor, putative [Ixodes scapularis]
Length = 359
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 24 VRFGRVPKREKARILAAMQQ-----------STNTKCTEKALAAELDDEQ----RMLSTV 68
VR+GRVPKR + R ++ S + E+ A +L+ +Q ++ T+
Sbjct: 49 VRYGRVPKRSRERGSSSGAAPLSGDEGGGVASLGSPGQEEQCARDLETQQLAMYDIILTI 108
Query: 69 VRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERF 128
+AH CA+T +K + RR P P P+S P Q + L Q F+
Sbjct: 109 SQAHHAHCAYTEEKTRSLARR----PAIFVRGGAEGGPSLPDS-PEQSKLGLWQQFATLV 163
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL--ACMFDSQTNSMICLNGE 186
+P+++ VVEFAKR+PGF L DDQ+ L+KAG FEV LV + + + +++ +G
Sbjct: 164 TPSVQRVVEFAKRVPGFLELVQDDQLILIKAGFFEVWLVHVSRGVLVGAPHDTLTFSDGT 223
Query: 187 VLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS-SIVVISPSRSGLRNKELVE 245
L+R + S+F + L S ++ +F+ +++ S SRSGL + + +
Sbjct: 224 YLIRQQLELMFDVSGHRSLFAASSVLGEYRPSSAQVAVFAPGLILSSTSRSGLYDSKAIS 283
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
+G+L L +NHP + L + +L LR L H+ L
Sbjct: 284 LGQGRLCEALRLQAGRNHPGDVGLPNRALCLLGPLRALGLAHARHL 329
>gi|405964149|gb|EKC29666.1| Putative nuclear hormone receptor HR3 [Crassostrea gigas]
Length = 716
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
Query: 108 NPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLV 167
NP+ + + + F + TI+D V FAK+IPGF L DDQ++L+K G FEV V
Sbjct: 509 NPDGTVCEAGEVCWEGFQSLLNKTIQDTVIFAKKIPGFPHLDQDDQISLIKGGCFEVACV 568
Query: 168 RLACMFDSQTNSMICLNGEVLV-RDSIHSSN--ARFLMDSMFDFAERLNGLHLSDTEIGL 224
+ DS TN+M LV R+ + ++ F+ R N L D E L
Sbjct: 569 IHSKFIDSDTNTMFVAGKNTLVCREDMKRGFPLGEHFVELFFNLCVRFNAYKLGDAEKAL 628
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
FS++V+ISP R GL+N+E V +++ L L + Q+HP ++ L L+ + LR L
Sbjct: 629 FSALVLISPDRQGLKNREKVSKLQELLIQALQTQITQSHPTEVGLFPRLLMSISSLRELG 688
Query: 285 QLHSEKL 291
H L
Sbjct: 689 VEHRRML 695
>gi|194858004|ref|XP_001969081.1| GG25225 [Drosophila erecta]
gi|190660948|gb|EDV58140.1| GG25225 [Drosophila erecta]
Length = 702
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 494 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 553
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 554 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 611
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 612 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 671
Query: 290 KLVAFQM 296
L F++
Sbjct: 672 SLSKFKL 678
>gi|195379022|ref|XP_002048280.1| GJ13881 [Drosophila virilis]
gi|194155438|gb|EDW70622.1| GJ13881 [Drosophila virilis]
Length = 424
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 174 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIVTTVA-------ESLEFQKIWLWQ 225
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 226 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 284
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 285 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRTGLSEPK 343
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L + + L L + +P+LR+L H L +M
Sbjct: 344 VIARARELVAEALRVQILRSRAGSTQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 403
Query: 300 QQQL 303
+ +L
Sbjct: 404 KLRL 407
>gi|218156230|dbj|BAH03347.1| retinoic acid receptor 3 [Eptatretus burgeri]
Length = 375
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 110/210 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FS+ + I VEFAKRIPGFS L DDQ+TLLKA ++L++R+ + + +
Sbjct: 132 DLWDKFSDLSTKCIVRTVEFAKRIPGFSTLAIDDQITLLKAACLDILILRICTRYTPEHD 191
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + DTE GL S+I +I+ R L
Sbjct: 192 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFASQLIPLGMDDTEAGLLSAICLITGDRPEL 251
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ V+R++ L L + + P + ++ +++ + DLR ++ SE+++ +M
Sbjct: 252 EDPSKVDRLQEPLLEALKFYVRKRRPSKPHMFPKILMKITDLRGISAKGSERVITLKMEI 311
Query: 299 QQQQLAAQQQQWHGEDNSKSPTGSSWSDVT 328
Q+ D ++ T +S T
Sbjct: 312 PGSMPPLIQEMLENSDGPEALTSTSGGSCT 341
>gi|242005002|ref|XP_002423364.1| hormone receptor hr3, putative [Pediculus humanus corporis]
gi|212506394|gb|EEB10626.1| hormone receptor hr3, putative [Pediculus humanus corporis]
Length = 599
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 36/267 (13%)
Query: 42 QQSTNTKCTEKALAAELDDEQRMLS-TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++ N C K ++ + +LS T+ AH TC +T + I M + P
Sbjct: 336 EEDINQGCPSKMYPMQISE---LLSKTIADAHSRTCVYTLEHIHEMFHK----------P 382
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L+ + + +EL + +++ + I+ ++EFAK IPGF L DDQ+ LLKAG
Sbjct: 383 QDLSKLI---YYKNMAHEELWLECAQKLTTVIQQIIEFAKMIPGFMKLSQDDQIVLLKAG 439
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMD--------SMFDFAERL 212
FE+ ++R++ FD N VL D++ +A F D S+F+FA+ +
Sbjct: 440 SFELAVLRMSRYFDLSQNC-------VLYADTLLPQDAFFTTDTSEMKLVTSVFEFAKSV 492
Query: 213 NGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH----PEQMN 268
L L++TE+ L+S++V++S R GL+ + R+R + L +++NH +
Sbjct: 493 AELKLTETELALYSAVVLLSGDRPGLKGTTEINRLRHAVARALRFEMDRNHILPLKGDVT 552
Query: 269 LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ +++ +P LR L+ H + L F+
Sbjct: 553 VYDHIMAKIPALRELSLYHMDALAKFK 579
>gi|315360631|ref|NP_001186756.1| RAR-related orphan receptor gamma 1 [Oncorhynchus mykiss]
gi|313760284|emb|CAT65098.1| RAR-related orphan receptor gamma 1 protein [Oncorhynchus mykiss]
Length = 469
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ ++VV++H++T +++++ ++ +L P + + + +
Sbjct: 221 ERITASVVKSHMETSQHGSEELKRLVW-------------SLYTPEETRNFQSKSAEVMW 267
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + I+ VVEFAKRI GF LC +DQ+ LLKAG +VLL+R+ C + N+ +
Sbjct: 268 QHCAIHLTNAIQYVVEFAKRITGFLDLCQNDQIILLKAGCLDVLLIRM-CRAYNPINNTV 326
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ + + L+ ++FD A+ L+ + LS+ E+ LFS+ V++SP R L++
Sbjct: 327 LFDGKFASAQTFKALGCDDLVGAVFDLAKSLSCIQLSEEEMALFSAAVLLSPDRPWLKDT 386
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ K+ L H L++ + L A+++S LP ++++ LH +KL F++
Sbjct: 387 QQVQKLQEKVYVSLQHCLHRCGSSEEKL-AKMVSKLPMMKSICNLHIDKLKFFRL 440
>gi|77404271|ref|NP_001029208.1| peroxisome proliferator-activated receptor alpha [Bos taurus]
gi|59857877|gb|AAX08773.1| peroxisome proliferative activated receptor, alpha isoform 1 [Bos
taurus]
gi|296486911|tpg|DAA29024.1| TPA: peroxisome proliferative activated receptor, alpha [Bos
taurus]
gi|440905582|gb|ELR55950.1| Peroxisome proliferator-activated receptor alpha [Bos grunniens
mutus]
Length = 470
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 150/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 170 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIYEAYLKN--FN 221
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+KI+ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 222 MNKIKARVILAGKTNNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 279
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 280 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 338
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 339 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 398
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 399 IEKMQEGIVHVLKLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 458
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 459 HPLLQEIY 466
>gi|194475180|gb|ACF74541.1| RAR-related orphan receptor C [Cervus elaphus]
Length = 238
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 37 EMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 95
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDFA L+ L S+ EI L++++V+I+ +R GL
Sbjct: 96 DTVFFEGKYGGVELFRALGCSELISSIFDFARSLSALRFSEDEIALYTALVLINANRPGL 155
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H EKL FQ
Sbjct: 156 QEKRKVEQLQCNLELAFHHHLCKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQTFQ 209
>gi|28573920|ref|NP_788301.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
gi|28380972|gb|AAO41453.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
Length = 694
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 486 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 545
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 546 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 603
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 604 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 663
Query: 290 KLVAFQM 296
L F++
Sbjct: 664 SLSKFKL 670
>gi|114049539|emb|CAJ90623.1| HR3 isoform B2 [Blattella germanica]
Length = 566
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 124/235 (52%), Gaps = 20/235 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC FT + I M R+ P L+ L + +EL + ++
Sbjct: 326 TIADAHARTCLFTTEHIHEMFRK----------PQDLSKLLYYKN---MAHEELWLECAQ 372
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ FD N ++ +
Sbjct: 373 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYFDLSQNCVLYAD-T 431
Query: 187 VLVRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+L +D+ +++ L+ +F+FA+ + L L++TE+ L+S+ V++S R GL+ +
Sbjct: 432 MLPQDAFYTTETAEMKLVTCVFEFAKGVAELKLTETELALYSACVLLSADRPGLKGLAEI 491
Query: 245 ERMRGKLENMLMHVLNQNHP----EQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
R+ + L L +NH + + L++ +P LR L+ LH + L F+
Sbjct: 492 GRLSQAVLRALRIELERNHAIPIKGDVTVYDALLAKVPTLRELSMLHMDALAKFK 546
>gi|403282745|ref|XP_003932800.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Saimiri boliviensis boliviensis]
Length = 468
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 150/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCDDDIEDSESADLKYLTKRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ L A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARLILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|315360629|ref|NP_001186755.1| RAR-related orphan receptor gamma 2 [Oncorhynchus mykiss]
gi|313760286|emb|CAT65102.1| RAR-related orphan receptor gamma 2 protein [Oncorhynchus mykiss]
Length = 469
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ ++VV++H++T +++++ ++ +L P + + + +
Sbjct: 221 ERITASVVKSHMETSQHGSEELKRLVW-------------SLYTPEETRNFQSRSAEVMW 267
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + I+ VVEFAKRI GF LC +DQV LLKAG +VLL+R+ C + N+ +
Sbjct: 268 QQCAIHLTNAIQYVVEFAKRITGFLDLCQNDQVILLKAGCLDVLLIRM-CRAYNPINNTV 326
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ + + L+ ++FD A+ L+ + LS+ E+ LFS+ V++SP R L++
Sbjct: 327 LFDGKFASAQTFKALGCDDLVGAVFDLAKSLSCIQLSEEEMALFSAAVLLSPDRPWLKDT 386
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ K+ L H L++ + L A+++S LP ++++ LH +KL F++
Sbjct: 387 QQVQKLQEKVYLSLQHCLHRCGSSEEKL-AKMVSKLPMMKSICNLHIDKLEFFRL 440
>gi|332259074|ref|XP_003278613.1| PREDICTED: peroxisome proliferator-activated receptor alpha isoform
1 [Nomascus leucogenys]
gi|332259076|ref|XP_003278614.1| PREDICTED: peroxisome proliferator-activated receptor alpha isoform
2 [Nomascus leucogenys]
Length = 468
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|400270829|gb|AFP75244.1| peroxisome proliferator-activated receptor alpha, partial [Tupaia
belangeri]
gi|444519029|gb|ELV12519.1| Peroxisome proliferator-activated receptor alpha [Tupaia chinensis]
Length = 468
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C AE D + + ++ A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCERDVEDAEAADLKPLAKSIHEAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---SER 127
K +L +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 222 KGKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 280 SVETVTELTEFAKAIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+M+ + +L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 KMQEGIVQVLKLHLQTNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHP 458
Query: 306 QQQQWH 311
Q+ +
Sbjct: 459 LLQEIY 464
>gi|410968384|ref|XP_003990687.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Felis catus]
Length = 497
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 294 EMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 352
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 353 HTVFFEGKYGGTELFRALGCGELISSIFDFSHSLSTLRFSEDEIALYTALVLINANRPGL 412
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H EKL FQ
Sbjct: 413 QEKRKVEQLQHNLELAFHHHLYKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQTFQ 466
>gi|344254648|gb|EGW10752.1| Nuclear receptor ROR-gamma [Cricetulus griseus]
Length = 341
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 33/253 (13%)
Query: 51 EKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLAC 105
+K LA + ++ ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 83 QKCLALGMSRDEYLVQNVCKSYRETCQL---QVEDLLRQRTNLFSREEVT---------- 129
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+
Sbjct: 130 -----SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVV 184
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLF 225
LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI L+
Sbjct: 185 LVRM-CRAYNPDNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALRFSEDEIALY 243
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRT 282
+++V+I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+
Sbjct: 244 TALVLINANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRS 297
Query: 283 LNQLHSEKLVAFQ 295
L H EKL FQ
Sbjct: 298 LCSQHVEKLQIFQ 310
>gi|7549811|ref|NP_005027.2| peroxisome proliferator-activated receptor alpha [Homo sapiens]
gi|50348666|ref|NP_001001928.1| peroxisome proliferator-activated receptor alpha [Homo sapiens]
gi|426394854|ref|XP_004063700.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Gorilla gorilla gorilla]
gi|3041727|sp|Q07869.2|PPARA_HUMAN RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|765240|gb|AAB32649.1| peroxisome proliferator activated receptor alpha [Homo sapiens]
gi|27501928|gb|AAO13489.1| peroxisome proliferative activated receptor, alpha [Homo sapiens]
gi|47678625|emb|CAG30433.1| PPARA [Homo sapiens]
gi|48146987|emb|CAG33716.1| PPARA [Homo sapiens]
gi|56203312|emb|CAI22450.1| peroxisome proliferator-activated receptor alpha [Homo sapiens]
gi|109451434|emb|CAK54578.1| PPARA [synthetic construct]
gi|109452030|emb|CAK54877.1| PPARA [synthetic construct]
gi|119593808|gb|EAW73402.1| peroxisome proliferative activated receptor, alpha, isoform CRA_a
[Homo sapiens]
gi|119593810|gb|EAW73404.1| peroxisome proliferative activated receptor, alpha, isoform CRA_a
[Homo sapiens]
gi|158260665|dbj|BAF82510.1| unnamed protein product [Homo sapiens]
gi|187476343|gb|ACD12656.1| peroxisome proliferator-activated receptor alpha [Homo sapiens]
gi|208965326|dbj|BAG72677.1| peroxisome proliferator-activated receptor alpha [synthetic
construct]
gi|216409688|dbj|BAH02281.1| peroxisome proliferator activated receptor alpha [Homo sapiens]
gi|325495535|gb|ADZ17373.1| peroxisome proliferator-activated nuclear receptor alpha variant 3
[Homo sapiens]
Length = 468
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|194749053|ref|XP_001956954.1| GF24303 [Drosophila ananassae]
gi|190624236|gb|EDV39760.1| GF24303 [Drosophila ananassae]
Length = 892
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 642 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIATTVA-------ESLEFQKIWLWQ 693
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 694 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 752
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 753 -DGAYLTCQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 811
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 812 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 871
Query: 300 QQQL 303
+ +L
Sbjct: 872 KLRL 875
>gi|386767647|ref|NP_001246237.1| hormone receptor-like in 46, isoform G [Drosophila melanogaster]
gi|383302382|gb|AFH07992.1| hormone receptor-like in 46, isoform G [Drosophila melanogaster]
Length = 372
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 112/187 (59%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 164 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 223
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N+ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 224 SQNA--VLYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 281
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 282 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 341
Query: 290 KLVAFQM 296
L F++
Sbjct: 342 SLSKFKL 348
>gi|28573924|ref|NP_788303.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|386767645|ref|NP_001246236.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
gi|195475280|ref|XP_002089912.1| GE21721 [Drosophila yakuba]
gi|399369|sp|P31396.1|HR3_DROME RecName: Full=Probable nuclear hormone receptor HR3; Short=dHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|157230|gb|AAA28461.1| DHR3 [Drosophila melanogaster]
gi|7303778|gb|AAF58826.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|194176013|gb|EDW89624.1| GE21721 [Drosophila yakuba]
gi|373251236|gb|AEY64286.1| FI17818p1 [Drosophila melanogaster]
gi|383302381|gb|AFH07991.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
Length = 487
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQM 296
L F++
Sbjct: 457 SLSKFKL 463
>gi|188536040|ref|NP_035411.2| nuclear receptor ROR-gamma [Mus musculus]
gi|15928672|gb|AAH14804.1| RAR-related orphan receptor gamma [Mus musculus]
gi|117616722|gb|ABK42379.1| TOR [synthetic construct]
Length = 516
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 263 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 304
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 305 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM- 363
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 364 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 423
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 424 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 477
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 478 VEKLQIFQ 485
>gi|351710304|gb|EHB13223.1| Peroxisome proliferator-activated receptor alpha [Heterocephalus
glaber]
Length = 467
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 145/306 (47%), Gaps = 24/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDTEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 220 MNKVKARVILAGKTSHNPPFVIHDMETLCMAEKTLVAQMVANGVENKEAEVRFFHCCQCM 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLVAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N + +E
Sbjct: 339 ITREFLRNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIDYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+M+ + ++L L NHP+ L +L+ L DLR L H+ KLV TE L
Sbjct: 399 KMQEGIVHVLKLHLQSNHPDDTFLFPKLLQKLADLRQLVTEHA-KLVQVIKTESDASLHP 457
Query: 306 QQQQWH 311
Q+ +
Sbjct: 458 LLQEIY 463
>gi|195442298|ref|XP_002068895.1| GK18019 [Drosophila willistoni]
gi|194164980|gb|EDW79881.1| GK18019 [Drosophila willistoni]
Length = 524
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 281 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 340
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+VL+ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 341 SQNAV--LYGDVLLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 398
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 399 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 458
Query: 290 KLVAFQ 295
L F+
Sbjct: 459 ALSKFK 464
>gi|514833|gb|AAA19975.1| nuclear hormone receptor superfamily protein [Drosophila
melanogaster]
Length = 864
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 19/234 (8%)
Query: 76 CAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRD 134
C++T + ++RR P ST+A L+ Q+ L Q FS R +P ++
Sbjct: 627 CSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQQFSARVTPGVQR 678
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR--DS 192
+VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++ +G L R +
Sbjct: 679 IVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD--DGAYLTRQLEI 736
Query: 193 IHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKL- 251
++ S+ ++++ +FA LN LSDTEIGLFS++V+++ R+GL +++ R R +
Sbjct: 737 LYDSD---FVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPKVIGRARELVA 793
Query: 252 ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
E + + +L P+ + L L + +P+LR+L H L +M + +L
Sbjct: 794 EALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWTKLRL 847
>gi|380447797|gb|AFD54081.1| peroxisome proliferator-activated receptor alpha [Bubalus bubalis]
Length = 470
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 170 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIYEAYLKN--FN 221
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 222 MNKVKARVILAGKTNNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 279
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 280 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 338
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 339 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 398
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 399 IEKMQEGIVHVLKLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 458
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 459 HPLLQEIY 466
>gi|1145629|gb|AAB02582.1| orphan receptor TOR [Mus musculus]
Length = 516
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 263 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 304
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 305 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM- 363
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 364 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 423
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 424 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 477
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 478 VEKLQIFQ 485
>gi|218505955|gb|ABN49269.2| IP15960p [Drosophila melanogaster]
Length = 487
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQM 296
L F++
Sbjct: 457 SLSKFKL 463
>gi|328791756|ref|XP_392128.4| PREDICTED: probable nuclear hormone receptor HR3 [Apis mellifera]
Length = 522
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 135/256 (52%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + ++I+ R+ P L+ + + ++L + ++
Sbjct: 282 TIADAHARTCLLSTEQIQESFRK----------PHDLSRLIYYKN---MAHEQLWLECAQ 328
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N + L G+
Sbjct: 329 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQNCV--LYGD 386
Query: 187 VLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 387 TMLPQDAFYTTDTAEMKLVSCVFELARSIAELKLTETELALYSAAVLLSPDRPGLKGLAE 446
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ + L L++NH + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 447 ITRLSQAVIRALRSELDRNHVSPIKGDVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 506
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 507 HLEFPALHKELFSVDS 522
>gi|5679307|gb|AAD46913.1|AF163668_1 RORgamma t [Mus musculus]
Length = 495
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 242 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 283
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 284 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM- 342
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 343 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 402
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 403 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 456
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 457 VEKLQIFQ 464
>gi|344298523|ref|XP_003420941.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Loxodonta africana]
Length = 468
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCDHDLEDTETADLKFLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVQH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|340709667|ref|XP_003393424.1| PREDICTED: probable nuclear hormone receptor HR3-like [Bombus
terrestris]
Length = 522
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 135/256 (52%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + ++I+ R+ P L+ + + ++L + ++
Sbjct: 282 TIADAHARTCLLSTEQIQESFRK----------PHDLSRLIYYKN---MAHEQLWLECAQ 328
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N + L G+
Sbjct: 329 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQNCV--LYGD 386
Query: 187 VLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 387 TMLPQDAFYTTDTAEMKLVSCVFELARSIAELKLTETELALYSAAVLLSPDRPGLKGLAE 446
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ + L L++NH + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 447 ITRLSQAVIRALRSELDRNHVSPIKGDVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 506
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 507 HLEFPALHKELFSVDS 522
>gi|166092128|gb|ABY82108.1| RAR-related orphan receptor C isoform a (predicted) [Callithrix
jacchus]
Length = 491
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 129/249 (51%), Gaps = 23/249 (9%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ +V +++ +TC ++E +LR+ S++
Sbjct: 232 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SSIFSREEV 278
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 279 TGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM 338
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V
Sbjct: 339 -CRAYNADNRTVFFEGKYGGVELFRALGCSELISSIFDFSHSLSALSFSEDEIALYTALV 397
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQL 286
+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L
Sbjct: 398 LINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQ 451
Query: 287 HSEKLVAFQ 295
H E+L FQ
Sbjct: 452 HVERLQIFQ 460
>gi|426225905|ref|XP_004007099.1| PREDICTED: peroxisome proliferator-activated receptor alpha [Ovis
aries]
Length = 470
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 149/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 170 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIYEAYLKN--FN 221
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 222 MNKVKARVILAGKTNNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 279
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 280 CTSVETVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 338
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 339 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 398
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 IEKMQEGIVHVLKLHLQNNHPDDAFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 458
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 459 HPLLQEIY 466
>gi|161076500|ref|NP_001097256.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
gi|157400270|gb|ABV53751.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
Length = 456
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 248 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 307
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 308 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 365
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 366 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 425
Query: 290 KLVAFQM 296
L F++
Sbjct: 426 SLSKFKL 432
>gi|20151433|gb|AAM11076.1| GH21112p [Drosophila melanogaster]
gi|220947174|gb|ACL86130.1| Hr46-PB [synthetic construct]
gi|220952516|gb|ACL88801.1| Hr46-PB [synthetic construct]
Length = 444
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 236 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 295
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 296 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 353
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 354 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 413
Query: 290 KLVAFQM 296
L F++
Sbjct: 414 SLSKFKL 420
>gi|195126627|ref|XP_002007772.1| GI13134 [Drosophila mojavensis]
gi|193919381|gb|EDW18248.1| GI13134 [Drosophila mojavensis]
Length = 569
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 319 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIVTTVA-------ESLEFQKIWLWQ 370
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 371 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 429
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 430 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 488
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L + + L L + +P+LR+L H L +M
Sbjct: 489 VIARARELVAEALRVQILRSRAGSTQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 548
Query: 300 QQQL 303
+ +L
Sbjct: 549 KLRL 552
>gi|380028730|ref|XP_003698042.1| PREDICTED: probable nuclear hormone receptor HR3-like [Apis florea]
Length = 640
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 135/256 (52%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + ++I+ R+ P L+ + + ++L + ++
Sbjct: 400 TIADAHARTCLLSTEQIQESFRK----------PHDLSRLIYYKN---MAHEQLWLECAQ 446
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N + L G+
Sbjct: 447 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQNCV--LYGD 504
Query: 187 VLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 505 TMLPQDAFYTTDTAEMKLVSCVFELARSIAELKLTETELALYSAAVLLSPDRPGLKGLAE 564
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ + L L++NH + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 565 ITRLSQAVIRALRSELDRNHVSPIKGDVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 624
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 625 HLEFPALHKELFSVDS 640
>gi|125808571|ref|XP_001360799.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|195151019|ref|XP_002016447.1| GL10487 [Drosophila persimilis]
gi|54635971|gb|EAL25374.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|194110294|gb|EDW32337.1| GL10487 [Drosophila persimilis]
Length = 487
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQ 295
L F+
Sbjct: 457 SLSKFK 462
>gi|291191194|pdb|3L0L|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
gi|291191196|pdb|3L0L|B Chain B, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
Length = 248
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ +V +++ +TC ++E +LR+ S + + +
Sbjct: 6 ASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNIFSREEVTGYQRK 52
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 53 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYN 111
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V+I+ R
Sbjct: 112 ADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHR 171
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H E+L
Sbjct: 172 PGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQHVERLQ 225
Query: 293 AFQ 295
FQ
Sbjct: 226 IFQ 228
>gi|218156204|dbj|BAH03334.1| retinoic acid receptor 2 [Lethenteron camtschaticum]
Length = 479
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF L DQ+TLLKA ++L++R+
Sbjct: 219 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFVNLSIADQITLLKAACLDILILRICT 278
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL ++I +I
Sbjct: 279 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLSVDDTEAGLLAAICLI 338
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
S R L E VER++ L + + + P++ ++ +L+ + DLR ++ +E++
Sbjct: 339 SGDRQDLEEPEKVERLQEPLLEAMKVYVRRRRPDKPHMFPKLLMKITDLRGISAKGTERV 398
Query: 292 VAFQM 296
+ +M
Sbjct: 399 ITLKM 403
>gi|74271871|ref|NP_001028201.1| peroxisome proliferator-activated receptor alpha [Macaca mulatta]
gi|67078833|gb|AAY64435.1| peroxisome proliferator activated receptor [Macaca mulatta]
gi|383419383|gb|AFH32905.1| peroxisome proliferator-activated receptor alpha [Macaca mulatta]
Length = 467
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 28/308 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ LV TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQ-LVQIIKTESDAAL 455
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 456 HPLLQEIY 463
>gi|402884570|ref|XP_003905752.1| PREDICTED: peroxisome proliferator-activated receptor alpha isoform
1 [Papio anubis]
gi|402884572|ref|XP_003905753.1| PREDICTED: peroxisome proliferator-activated receptor alpha isoform
2 [Papio anubis]
gi|355563768|gb|EHH20330.1| hypothetical protein EGK_03161 [Macaca mulatta]
gi|355785077|gb|EHH65928.1| hypothetical protein EGM_02801 [Macaca fascicularis]
Length = 467
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 28/308 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ LV TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQ-LVQIIKTESDAAL 455
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 456 HPLLQEIY 463
>gi|383420561|gb|AFH33494.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 128/249 (51%), Gaps = 23/249 (9%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 238 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNIFSREEV 284
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + + + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 285 IGYQRKSMWGMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM 344
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V
Sbjct: 345 -CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALV 403
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQL 286
+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L
Sbjct: 404 LINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQ 457
Query: 287 HSEKLVAFQ 295
H E+L FQ
Sbjct: 458 HVERLQIFQ 466
>gi|1514595|emb|CAA68898.1| peroxisome proliferator-activated receptor alpha [Homo sapiens]
Length = 468
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLAQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|195028616|ref|XP_001987172.1| GH20117 [Drosophila grimshawi]
gi|193903172|gb|EDW02039.1| GH20117 [Drosophila grimshawi]
Length = 487
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSDEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQ 295
L F+
Sbjct: 457 ALSKFK 462
>gi|405965497|gb|EKC30866.1| Retinoic acid receptor beta [Crassostrea gigas]
Length = 501
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 9/240 (3%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIE-PMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+DEQ +L ++ AH T +IE +L H T + A N N + +
Sbjct: 206 EDEQSVLQEILEAH----RVTFPQIEEAVLSPMSCHDTRGDIENDEASKENSNQ---KKE 258
Query: 118 QELLQD-FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
+ +L D +E S I +VEFAK++PGF+ L DQ+TLLKA E++++RL +D
Sbjct: 259 KSMLWDKVTELSSKGIIKIVEFAKKMPGFTSLSTSDQITLLKAACLEIMILRLCSRYDLD 318
Query: 177 TNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
+ M+ G L R+ + L D++F FA L L++ + E + S+I +IS RS
Sbjct: 319 KDVMLFNGGLSLDREQLQKGGFGTLTDTIFRFASSLKVLNIDEMEYAVLSAICLISGDRS 378
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
GL E VE+M+ + L H + +Q N+ A+++ L DLR+++ +E+++ ++
Sbjct: 379 GLEESERVEQMQEPILEALKHYVRTRRKDQPNVFAKILYKLTDLRSISVKGAERVLHLRL 438
>gi|50882278|gb|AAT85614.1| peroxisome proliferator-activated receptor alpha [Dicentrarchus
labrax]
Length = 502
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 147/313 (46%), Gaps = 43/313 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAE-LDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A +K EK +A+ LDD + ++ + A++
Sbjct: 183 HNA-IRFGRMPQAEKLKLKA------ESKMVEKEVASPMLDDHKILVRQIHEAYMKNFNM 235
Query: 79 TADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHP-----LQGQQ------- 118
K +L P T+ TLA + +P LQG +
Sbjct: 236 NKAKARLILTGKTSKPPFIIHDMETFQLAERTLAAHMVNGDYPEPESGLQGGEVVPAGGC 295
Query: 119 -ELLQDFSE---------RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
EL Q +E T+ ++ EFAK +PGF L +DQVTLLK GV+E L
Sbjct: 296 VELQQRKAEARLFHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTL 355
Query: 169 LA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLF 225
LA CM ++ ++ G ++ R+ + S F +M+ F FA R N L L D+++ LF
Sbjct: 356 LASCM--NKDGLLVARGGGLITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALF 413
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++ R GL + LVE+++ L L L NHP+ L L+ L DLR L
Sbjct: 414 VAAIICCGDRPGLVDVPLVEQLQESLVQALRLHLLANHPDDNFLFPRLLQKLADLRELVT 473
Query: 286 LHSEKLVAFQMTE 298
H++ + + TE
Sbjct: 474 EHAQLVQEIKTTE 486
>gi|19401877|gb|AAL87699.1|AF481797_1 peroxisome proliferator-activated receptor alpha [Anser anser]
Length = 468
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + T E +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEIL--TGESYIED---SEMADLKSLAKRIHDAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQESIVHVLKLHLQTNHPDDTFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|395855952|ref|XP_003800407.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Otolemur
garnettii]
Length = 514
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 128/254 (50%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T A A L + + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 255 TPGAPYASLMEIEHLVQNVCKSYRETCQL---RLEDLLRQRSNVFSREEVT--------- 302
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 303 ------GYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 356
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI L
Sbjct: 357 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALRFSEDEIAL 415
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ VE+++ LE H L + H + L++ LP LR
Sbjct: 416 YTALVLINANRPGLQETRKVEQLQYNLELAFQHHLCKTHRQ------SLLAKLPPKGTLR 469
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 470 SLCSQHMEELHVFQ 483
>gi|262358093|gb|ACY56691.1| HR3 nuclear receptor [Daphnia pulex]
Length = 636
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 30/243 (12%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+ T+ AH TC F+ + I MLR+ P ++ + + Q+EL +
Sbjct: 393 LAKTIGDAHSRTCLFSGEHIADMLRK----------PQDIS---KVHYYKNMAQEELWLE 439
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
++R + I+ ++EFAK +PGF L DDQ+ LLK G FE+ ++R++ +D N++ L
Sbjct: 440 CAQRLTAVIQQIIEFAKMVPGFMKLSQDDQIVLLKTGSFELAVLRMSRYYDLSQNAV--L 497
Query: 184 NGEVLV-------RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
G+ L+ DS+ + L+ ++F+FA+ L L LS+ ++ L+S+ V++S R
Sbjct: 498 FGDTLLPVEAFLTPDSVEAK----LVSAVFEFAKSLAELKLSEIQLALYSAFVLLSSDRM 553
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLV 292
GLR ++R+ + L L++ H +++ L + LP LR ++ LH E L
Sbjct: 554 GLRGTLEIQRLGQAVLRALRLELSRTHRTPLKGDISVADSLAARLPALREISGLHMEALA 613
Query: 293 AFQ 295
F+
Sbjct: 614 RFK 616
>gi|8132820|gb|AAF73405.1|AF229356_1 peroxisome proliferator activated receptor alpha [Bos taurus]
Length = 470
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 147/307 (47%), Gaps = 26/307 (8%)
Query: 21 NAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTA 80
N +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 NNAIRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIYEAYLKN--FNM 220
Query: 81 DKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---SE 126
+KI+ + A + H T C + TL L N +Q + ++ F
Sbjct: 221 NKIKARVTLAGKTNNNPAFLIHDMETLCMAEKTLVAKLVANG--IQNKVAEVRIFHCCQC 278
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 279 TSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGNG 337
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +
Sbjct: 338 FITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHI 397
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLA 304
E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 398 EKMQEGIVHVLKLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAALH 457
Query: 305 AQQQQWH 311
Q+ +
Sbjct: 458 PLLQEIY 464
>gi|195383602|ref|XP_002050515.1| GJ20161 [Drosophila virilis]
gi|194145312|gb|EDW61708.1| GJ20161 [Drosophila virilis]
Length = 487
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSDEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQ 295
L F+
Sbjct: 457 ALSKFK 462
>gi|321476560|gb|EFX87520.1| hypothetical protein DAPPUDRAFT_311954 [Daphnia pulex]
Length = 616
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 30/243 (12%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+ T+ AH TC F+ + I MLR+ P ++ + + Q+EL +
Sbjct: 373 LAKTIGDAHSRTCLFSGEHIADMLRK----------PQDIS---KVHYYKNMAQEELWLE 419
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
++R + I+ ++EFAK +PGF L DDQ+ LLK G FE+ ++R++ +D N++ L
Sbjct: 420 CAQRLTAVIQQIIEFAKMVPGFMKLSQDDQIVLLKTGSFELAVLRMSRYYDLSQNAV--L 477
Query: 184 NGEVLV-------RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
G+ L+ DS+ + L+ ++F+FA+ L L LS+ ++ L+S+ V++S R
Sbjct: 478 FGDTLLPVEAFLTPDSVEAK----LVSAVFEFAKSLAELKLSEIQLALYSAFVLLSSDRM 533
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLV 292
GLR ++R+ + L L++ H +++ L + LP LR ++ LH E L
Sbjct: 534 GLRGTLEIQRLGQAVLRALRLELSRTHRTPLKGDISVADSLAARLPALREISGLHMEALA 593
Query: 293 AFQ 295
F+
Sbjct: 594 RFK 596
>gi|304367610|gb|ADM26619.1| peroxisome proliferator-activated receptor alpha [Capra hircus]
Length = 437
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 27/295 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 153 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIYEAYLKN--FN 204
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 205 MNKVKARVILAGKTTNNPPFVIHDMETLCTAEKTLVAKLVANG--VQNKEAEVRIFHCCQ 262
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 263 CTSVETVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 321
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 322 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 381
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 382 IEKMQEGIVHVLKLHLQNNHPDDAFLFPKLLQKMADLRQLVTEHAQLVQVIKKTE 436
>gi|291191186|pdb|3KYT|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
gi|291191192|pdb|3L0J|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
gi|339717467|pdb|3B0W|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
gi|339717468|pdb|3B0W|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
Length = 243
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L + + ++ +V +++ +TC ++E +LR+ S + + +
Sbjct: 1 ASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQ----------RSNIFSREEVTGYQRK 47
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 48 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYN 106
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V+I+ R
Sbjct: 107 ADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHR 166
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLV 292
GL+ K VE+++ LE H L + H + +++ LP LR+L H E+L
Sbjct: 167 PGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQHVERLQ 220
Query: 293 AFQ 295
FQ
Sbjct: 221 IFQ 223
>gi|195017101|ref|XP_001984538.1| GH14972 [Drosophila grimshawi]
gi|193898020|gb|EDV96886.1| GH14972 [Drosophila grimshawi]
Length = 904
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 654 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIVTTVA-------ESLEFQKIWLWQ 705
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 706 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 764
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R GL +
Sbjct: 765 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRLGLSEPK 823
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L + + L L + +P+LR+L H L +M
Sbjct: 824 VIARARELVAEALRVQILRSRAGSTQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 883
Query: 300 QQQL 303
+ +L
Sbjct: 884 KLRL 887
>gi|78172870|gb|ABB29460.1| peroxisome proliferator-activated receptor alpha [Dicentrarchus
labrax]
Length = 330
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 148/313 (47%), Gaps = 43/313 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAA-ELDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A +K EK +A+ LDD + ++ + A++
Sbjct: 23 HNA-IRFGRMPQAEKLKLKA------ESKMVEKEVASPMLDDHKILVRQIHEAYMKNFNM 75
Query: 79 TADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHP-----LQGQQ------- 118
K +L P T+ TLA + +P LQG +
Sbjct: 76 NKAKARLILTGKTSKPPFIIHDMETFQLAERTLAAHMVNGDYPEPESGLQGGEVVPAGGC 135
Query: 119 -ELLQDFSE-RF--------SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
EL Q +E R T+ ++ EFAK +PGF L +DQVTLLK GV+E L
Sbjct: 136 VELQQRKAEARLFHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTL 195
Query: 169 LA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLF 225
LA CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF
Sbjct: 196 LASCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALF 253
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++ R GL + LVE+++ L L L NHP++ L L+ L DLR L
Sbjct: 254 VAAIICCGDRPGLVDVPLVEQLQESLVQALRLHLLANHPDENFLFPRLLQKLADLRELVT 313
Query: 286 LHSEKLVAFQMTE 298
H++ + + TE
Sbjct: 314 EHAQLVQEIKTTE 326
>gi|297279991|ref|XP_002801826.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 3 [Macaca
mulatta]
Length = 506
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 45/254 (17%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ +++ + ++ L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRMCRAYNADNH-------------TVFFEGCSELISSIFDFSHSLSALHFSEDEIAL 407
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 408 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 461
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 462 SLCSQHVERLQIFQ 475
>gi|47825369|ref|NP_001001460.1| peroxisome proliferator-activated receptor gamma [Gallus gallus]
gi|326927823|ref|XP_003210088.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Meleagris gallopavo]
gi|8843931|gb|AAF80170.1|AF163811_1 peroxisome proliferator-activated receptor gamma [Gallus gallus]
gi|8953747|dbj|BAA98100.1| peroxisome proliferator-activated receptor [Gallus gallus]
gi|19110867|gb|AAL85323.1| peroxisome proliferator-activated receptor gamma [Gallus gallus]
Length = 475
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 150/308 (48%), Gaps = 23/308 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C ++ PLQ Q + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLRMGEDQIKCK---HASPLQEQNKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSLHP 465
Query: 306 QQQQWHGE 313
Q+ + +
Sbjct: 466 LLQEIYKD 473
>gi|156630609|gb|ABU89803.1| nuclear receptor subfamily 1 DEF [Mytilus galloprovincialis]
Length = 576
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSER 127
VV AH TC T + R + P ++P+ ++ + F +
Sbjct: 332 VVNAHFKTCKPTYQNVREANMRLEKLKAQNMLPDFSKMKIDPS--------KMWEQFVQN 383
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI------ 181
P I VV+F K+IPGF+ +C +DQ+ L+K G FEV+LVR+ + D++ M
Sbjct: 384 MVPEITMVVKFCKKIPGFNEICQEDQINLIKQGSFEVMLVRMCNLVDTEKEEMFDPDMKM 443
Query: 182 -CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
C VL FL++ F A+ N L L+D EIG+F++ ++I P R + N
Sbjct: 444 KCPKAVVL-----GMPMGTFLVE-FFKVAKAFNPLQLTDGEIGIFTATLIICPDRKSIIN 497
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
+ +++ L L ++ +NH + +L EL+ +P R +N H++ L +M
Sbjct: 498 SVAIMKLQLLLMQALYVLIKKNHSDYASLFIELMKRIPIFRGINAKHAKMLNNMKMN 554
>gi|351696033|gb|EHA98951.1| Peroxisome proliferator-activated receptor gamma [Heterocephalus
glaber]
Length = 505
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNT---KCTE-KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + +C + +ALA L D +++ +
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLTPECADLRALAKHLYD----------SYIKS 253
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 254 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 313
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 314 QFRSVEAVQEITEYAKSIPGFVGLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 372
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 373 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 432
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 433 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 492
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 493 LHPLLQEIYKD 503
>gi|189031274|gb|ACD74810.1| transcription factor E75B [Helicoverpa armigera]
Length = 112
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 7/86 (8%)
Query: 393 RFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH-----VEDMPVLKRI 447
R+RKLDSPTDSGIESG EK E+ P S CSSPRSS EE + +DMPVLKR+
Sbjct: 28 RYRKLDSPTDSGIESGNEKHER-IVGPGSGCSSPRSSLEEHTGDRRPPPSADDMPVLKRV 86
Query: 448 LQAPPL-DTSSLMDEAYKPHKKFRAL 472
L+APPL T+SLMDEAYKPHKKFRA+
Sbjct: 87 LEAPPLYHTTSLMDEAYKPHKKFRAM 112
>gi|417401468|gb|JAA47619.1| Putative peroxisome proliferator-activated receptor alpha [Desmodus
rotundus]
Length = 468
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDIALFVAAIICCGDRPGLLNVGQ 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L HP+ L L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQSGHPDDAFLFPRLLQKMADLRQLVTEHAQLVQVIKRTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|114686925|ref|XP_001136470.1| PREDICTED: peroxisome proliferator-activated receptor alpha isoform
3 [Pan troglodytes]
gi|397482432|ref|XP_003812430.1| PREDICTED: peroxisome proliferator-activated receptor alpha [Pan
paniscus]
gi|410329287|gb|JAA33590.1| peroxisome proliferator-activated receptor alpha [Pan troglodytes]
Length = 467
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 27/286 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQ 442
>gi|340714852|ref|XP_003395937.1| PREDICTED: ecdysone-induced protein 78C-like [Bombus terrestris]
Length = 508
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP-----NSHPLQGQQ-ELL 121
V +AH C FT + ++R+ P T+ S A P +P + ++ Q+ L
Sbjct: 246 VSQAHHAHCGFTEESTRGIVRKPMIIPASTS--SQPASPEDPEAASSTAETVESQRIWLW 303
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q F+ R +P+++ VVEFAKR+PGF L DDQ+ L+K G FEV L ++ M + +SM
Sbjct: 304 QQFATRITPSVQRVVEFAKRVPGFCDLSQDDQLILIKVGFFEVWLSHISKM--TTDSSMT 361
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G + R + + ++ F LN LSDTE+GLFS V++ R GL +
Sbjct: 362 FEDGTYITRQQMELMYEPDFVSALMQFTSALNAHQLSDTELGLFSGAVLLG-ERPGLNDV 420
Query: 242 ELVERMRGKLENMLMHVLNQNH-----PEQMNLCAELISM---LPDLRTLNQLHSEKLVA 293
+ V+R++ +L L +NH C+ + S+ +P+LRTL H+ L
Sbjct: 421 KTVQRLQDRLLEALKVQALRNHTVSGEATSAGGCSGVSSVSQRIPELRTLGARHANLLDW 480
Query: 294 FQ 295
F+
Sbjct: 481 FR 482
>gi|1710639|sp|P51450.1|RORG_MOUSE RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma; AltName:
Full=Thymus orphan receptor; Short=TOR
gi|1155341|gb|AAB40709.1| RORgamma orphan nuclear receptor [Mus musculus]
gi|2674083|gb|AAC53501.1| nuclear orphan receptor RORgamma [Mus musculus]
Length = 516
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 263 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 304
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LL AG EV+LVR+
Sbjct: 305 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLTAGAMEVVLVRM- 363
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 364 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 423
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 424 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 477
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 478 VEKLQIFQ 485
>gi|395819574|ref|XP_003783157.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Otolemur garnettii]
Length = 468
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + + +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTYEH-----DIDDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKANNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQNNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|216409700|dbj|BAH02287.1| retinoid-related orphan receptor gamma [Homo sapiens]
Length = 506
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 45/254 (17%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEG------------CSELISSIFDFSHSLSALHFSEDEIAL 407
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 408 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 461
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 462 SLCSQHVERLQIFQ 475
>gi|162567479|gb|ABQ23994.2| peroxisome proliferator-activated receptor gamma [Anas
platyrhynchos]
Length = 475
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 23/308 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSGIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C + PLQ Q + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLMMGEDQIKCK---HVSPLQEQNKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSLHP 465
Query: 306 QQQQWHGE 313
Q+ + +
Sbjct: 466 LLQEIYKD 473
>gi|155624220|gb|ABU24465.1| peroxisome proliferator-activated receptor alpha [Gallus gallus]
Length = 468
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTGENY-----VEDSEMADLKSLAKRIHDAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV E + LA + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSNLDLNDQVTLLKYGVNEAIFAMLASVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTEFDAHL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|19401880|gb|AAL87700.1|AF481798_1 peroxisome proliferator-activated receptor gamma [Anser anser]
Length = 472
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C + PLQ Q + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLMMGEDQIKCK---HVSPLQEQNKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSLHP 465
Query: 306 QQQQWH 311
Q+ +
Sbjct: 466 LLQEIY 471
>gi|218156202|dbj|BAH03333.1| retinoic acid receptor 1 [Lethenteron camtschaticum]
Length = 497
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF L DQ+TLLKA E+L++R+
Sbjct: 226 HRVQLDLGLWDKFSELSTKCIVKIVEFAKRLPGFPSLTIADQITLLKAACLEILILRICS 285
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + D E GL S+I +I
Sbjct: 286 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDYVFAFAAQLLPLEMDDAEAGLLSAICLI 345
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L + VER++ L L + + P + ++ +++ + DLR ++ SE++
Sbjct: 346 CGDRQDLEDPHKVERLQEPLVETLKLYVRRRRPTKPHMFPKMLMKITDLRGISAKGSERV 405
Query: 292 VAFQM 296
+ +M
Sbjct: 406 ITLKM 410
>gi|403302650|ref|XP_003941967.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 315 EMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 373
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 374 RTVFFEGKYGGVELFRALGCSELISSIFDFSHSLSALRFSEDEIALYTALVLINANRPGL 433
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H E+L FQ
Sbjct: 434 QEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQHVERLQIFQ 487
>gi|115899495|ref|XP_789488.2| PREDICTED: thyroid hormone receptor beta-like [Strongylocentrotus
purpuratus]
Length = 423
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 106/173 (61%)
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
SE +P+I VVEFAKRIPGF+ L HDDQ+ LLK E++ +R+A FD + +I
Sbjct: 231 LSEIMTPSIVKVVEFAKRIPGFTGLHHDDQILLLKTCCMEIMCLRVAQKFDPDSQKLILS 290
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
NG + + + L++ +FDFA ++ L L++TE+ L +++++I+ R GL+ +L
Sbjct: 291 NGLRVGKSDMDHGVLSELIEPIFDFAVSMSRLQLTETEMALLAAVLLIAGDRPGLKEAKL 350
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
VE ++ L H +N++ P+ A+++ + DLRT++ H+E+++ ++
Sbjct: 351 VETLQDSLLTAFQHFINESRPKTPVHWAKILMKITDLRTISARHAERIMCIKL 403
>gi|426331481|ref|XP_004026709.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Gorilla gorilla
gorilla]
Length = 506
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 45/254 (17%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEG------------CSELISSIFDFSHSLSALHFSEDEIAL 407
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 408 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQT------ILAKLPPKGKLR 461
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 462 SLCSQHVERLQIFQ 475
>gi|74213690|dbj|BAE35645.1| unnamed protein product [Mus musculus]
Length = 516
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 263 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 304
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC + Q+ LLKAG EV+LVR+
Sbjct: 305 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNGQIILLKAGAMEVVLVRM- 363
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 364 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 423
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 424 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 477
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 478 VEKLQIFQ 485
>gi|157060005|dbj|BAF79869.1| peroxisome proliferator-activated receptor gamma [Eublepharis
macularius]
gi|157060007|dbj|BAF79870.1| peroxisome proliferator-activated receptor gamma [Eublepharis
macularius]
Length = 476
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 145/298 (48%), Gaps = 23/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKLLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T D I P + + + + C + P+Q Q + + Q R
Sbjct: 234 ILTGKTTD-ISPFV--IYDMNSLMMGEDQIKCK---HLTPMQEQNKEVAICIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA M + + ++ NG+
Sbjct: 288 VEAVQEITEFAKSIPGFVSLDLNDQVTLLKYGVHEIIYTLLASMMNK--DGVLISNGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSL 463
>gi|4186077|emb|CAA10661.1| ROR gamma T protein [Mus musculus]
Length = 495
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 242 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 283
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LL AG EV+LVR+
Sbjct: 284 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLTAGAMEVVLVRM- 342
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 343 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 402
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 403 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 456
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 457 VEKLQIFQ 464
>gi|195120906|ref|XP_002004962.1| GI20211 [Drosophila mojavensis]
gi|193910030|gb|EDW08897.1| GI20211 [Drosophila mojavensis]
Length = 487
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ++L D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEDLWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSDEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQ 295
L F+
Sbjct: 457 ALSKFK 462
>gi|1843450|emb|CAA49562.1| largest of the predicted retinoic acid receptor delta 1 isoforms
empolying a CUG initiation site [Notophthalmus
viridescens]
Length = 629
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 395 HRVQLDLGLWHKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICT 454
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 455 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 514
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 515 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 574
Query: 292 VAFQM 296
+ +M
Sbjct: 575 ITLKM 579
>gi|355712925|gb|AES04513.1| peroxisome proliferator-activated receptor gamma [Mustela putorius
furo]
Length = 517
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 218 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 270
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 271 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 330
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 331 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 389
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 390 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 449
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 450 IQDNLLQALELQLKMNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 509
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 510 LQEIYKD 516
>gi|348553941|ref|XP_003462784.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Cavia porcellus]
Length = 535
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 23/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + L E D + + + +++ + T
Sbjct: 235 HNA-IRFGRMPQAEKEKLLAEISSDIDQ------LTPECADLRALAKHLYDSYIKSFPLT 287
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ Q + + Q R
Sbjct: 288 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHMTPLQEQSKEVAIRIFQGCQFRS 347
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + M+ G+
Sbjct: 348 VEAVQEITEYAKSIPGFVGLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGMLISEGQGF 405
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 406 MTREFLKSLRKPFSDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 465
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 466 DIQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLQVIRKTETDMSL 523
>gi|307212738|gb|EFN88414.1| Probable nuclear hormone receptor HR3 [Harpegnathos saltator]
Length = 280
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 133/256 (51%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + ++I+ R+ P L+ + + ++L + ++
Sbjct: 40 TIADAHARTCLVSTEQIQESFRK----------PQDLSRLIYYKN---MAHEQLWLECAQ 86
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N L G+
Sbjct: 87 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQN--FVLYGD 144
Query: 187 VLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ +D+ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 145 ALLPQDAFYTTDTAEMKLVSCVFELARSVAELKLTETELALYSAAVLLSPDRPGLKGLAE 204
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ + L L +NH + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 205 ITRLSQAVIRALRSELERNHVTPIKGDVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 264
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 265 HLEFPALHKELFSVDS 280
>gi|296192054|ref|XP_002743900.1| PREDICTED: peroxisome proliferator-activated receptor alpha
[Callithrix jacchus]
Length = 468
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCDHDIEDSEAADLKYLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ L A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARLILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ F FA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFAFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|195066261|ref|XP_001996790.1| GH12165 [Drosophila grimshawi]
gi|193899800|gb|EDV98666.1| GH12165 [Drosophila grimshawi]
Length = 560
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P +T+A L+ Q+ L Q
Sbjct: 310 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIVTTVA-------ESLEFQKIWLWQ 361
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 362 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINDTTLTLD- 420
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R GL +
Sbjct: 421 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRLGLSEPK 479
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L + + L L + +P+LR+L H L +M
Sbjct: 480 VIARARELVAEALRVQILRSRAGSTQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 539
Query: 300 QQQL 303
+ +L
Sbjct: 540 KLRL 543
>gi|163929562|ref|NP_001106647.1| peroxisome proliferator-activated receptor gamma [Felis catus]
gi|162424857|gb|ABX90078.1| peroxisome proliferator-activated receptor gamma [Felis catus]
Length = 505
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDVNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTGHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|432853451|ref|XP_004067713.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 473
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 128/236 (54%), Gaps = 15/236 (6%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ VV++H++T F+ ++ LRR T P +S+ + + +
Sbjct: 225 ERITQNVVKSHIETSQFSTEE----LRRL---------AWTFYNPEETHSYISRSAETMW 271
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + + I+ +VEFAKRI GF LC +DQ+ LLKAG +VLL+R+ ++ N++
Sbjct: 272 QKCAVQITNAIQYIVEFAKRISGFMDLCQNDQIILLKAGCMDVLLIRMCRAYNPINNTLF 331
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ + L+ ++F+ A+ L+ + +++ E+ LFS+ V++SP R L +
Sbjct: 332 -FDGKFAGAQLFKALGCDDLVSAIFELAKSLSRIQMTEEEMALFSAAVLLSPDRPWLTDV 390
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
+ V++++ K+ L L + L A+++S LP +R++ LH +KL F++
Sbjct: 391 QKVQKLQKKVYVALQRCLQNKGASEEKL-AKMVSKLPLMRSICNLHIDKLEFFRLV 445
>gi|397492736|ref|XP_003817276.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Pan paniscus]
Length = 506
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 45/254 (17%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEG------------CSELISSIFDFSHSLSALHFSEDEIAL 407
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 408 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 461
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 462 NLCSQHVERLQIFQ 475
>gi|332810307|ref|XP_003308438.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Pan troglodytes]
Length = 506
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 45/254 (17%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEG------------CSELISSIFDFSHSLSALHFSEDEIAL 407
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 408 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 461
Query: 282 TLNQLHSEKLVAFQ 295
L H E+L FQ
Sbjct: 462 NLCSQHVERLQIFQ 475
>gi|307341|gb|AAA36468.1| peroxisome proliferator activated receptor [Homo sapiens]
Length = 468
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEVEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IP F+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPAFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|13311191|emb|CAC34402.1| peroxisome proliferator-activated receptor gamma [Xenopus laevis]
Length = 477
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 31/296 (10%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLST-VVRAHLDTCAF 78
HNA +RFGR+P+ EK ++LA + + E A +QR+L+ + +++ +
Sbjct: 179 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA-------DQRVLAKHLYDSYVKSFPL 230
Query: 79 TADKIEPML--RRAREHPTYTACPSTLACPLNPNSHPLQGQ-----------QELLQDFS 125
T K +L R + P ++L ++GQ + Q
Sbjct: 231 TKAKARAILTGRATDKTPVVIHDMNSLMM----GEDQIKGQCVSPEQNKEVAIRIFQRCQ 286
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
R + +R++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ G
Sbjct: 287 SRSAEAVREITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIFTMLASLMNK--DGVLVAEG 344
Query: 186 E-VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ + R+ + S F M+ F+FA R N L L D+++ +F +++++S R GL N +
Sbjct: 345 QGFMTREFLKSLRKPFSDFMEPKFEFAIRFNSLELDDSDLAIFVAVIILSGDRPGLLNVK 404
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHP+ L A+L+ + DLR + H + L + TE
Sbjct: 405 PIEDIQDSLLQALELQLKLNHPDSAQLFAKLLQKMTDLRQVVTEHVQLLQLIKKTE 460
>gi|38014781|gb|AAH60474.1| PPARg protein [Xenopus laevis]
Length = 477
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 31/296 (10%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLST-VVRAHLDTCAF 78
HNA +RFGR+P+ EK ++LA + + E A +QR+L+ + +++ +
Sbjct: 179 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA-------DQRVLAKHLYDSYVKSFPL 230
Query: 79 TADKIEPML--RRAREHPTYTACPSTLACPLNPNSHPLQGQ-----------QELLQDFS 125
T K +L R + P ++L ++GQ + Q
Sbjct: 231 TKAKARAILTGRATDKTPVVIHDMNSLMM----GEDQIKGQCVTPEQNKEVAIRIFQRCQ 286
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
R + +R++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ G
Sbjct: 287 SRSAEAVREITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIFTMLASLMNK--DGVLVAEG 344
Query: 186 E-VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ + R+ + S F M+ F+FA R N L L D+++ +F +++++S R GL N +
Sbjct: 345 QGFMTREFLKSLRKPFSDFMEPKFEFAIRFNSLELDDSDLAIFVAVIILSGDRPGLLNVK 404
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHP+ L A+L+ + DLR + H + L + TE
Sbjct: 405 PIEDIQDSLLQALELQLKLNHPDSAQLFAKLLQKMTDLRQVVTEHVQLLQLIKKTE 460
>gi|29169314|gb|AAO66458.1| CREB3L2-PPARgamma [Homo sapiens]
Length = 584
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 143/297 (48%), Gaps = 21/297 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 284 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 336
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ Q + + Q R
Sbjct: 337 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 396
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 397 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 455
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 456 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 515
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 516 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSL 572
>gi|328785639|ref|XP_396527.4| PREDICTED: ecdysone-induced protein 78C [Apis mellifera]
Length = 375
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP-----NSHPLQGQQ-ELL 121
V +AH C FT + ++R+ P T+ S A P +P + ++ Q+ L
Sbjct: 113 VSQAHHAHCGFTEESTRGIVRKPMIIPASTS--SQPASPEDPEAASSTAETVESQRIWLW 170
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q F+ R +P+++ VVEFAK++PGF L DDQ+ L+K G FEV L ++ M + +SM
Sbjct: 171 QQFATRITPSVQRVVEFAKKVPGFCDLSQDDQLILIKVGFFEVWLSHISKM--TTDSSMT 228
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G + R + + ++ F LN LSDTE+GLFS V++S R GL +
Sbjct: 229 FEDGTYITRQQMELMYEPDFVSALMQFTSALNAHQLSDTELGLFSGAVLLS-ERPGLNDV 287
Query: 242 ELVERMRGKLENMLMHVLNQNH-----PEQMNLCAELISM---LPDLRTLNQLHSEKLVA 293
+ V+R++ +L L +NH C+ + S+ +P+LR L H+ L
Sbjct: 288 KAVQRLQDRLLEALKVQALRNHTVSGEATSAGGCSGVSSVSQRIPELRALGARHANLLDW 347
Query: 294 FQ 295
F+
Sbjct: 348 FR 349
>gi|443722972|gb|ELU11613.1| hypothetical protein CAPTEDRAFT_227484 [Capitella teleta]
Length = 728
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 53/280 (18%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEP-MLRRAREHPTYTACPSTLACPLN------------- 108
+++ T++ AHL+TC +T++K+ +LR R C ++ ++
Sbjct: 440 QVVDTILEAHLNTCKYTSEKVAAGILRHHRIQAKLAECGIDMSKMMSSGMDMTKMMTGEM 499
Query: 109 ----------------------------PNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
P+S + GQ F + P I VV+F K
Sbjct: 500 DMDKMMQMSKMMNSQKDSAAENMDAKKAPDSEHMWGQ------FVQNMVPVITRVVKFCK 553
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV-RDSIHSSNAR 199
R+PGF+ LC DQ+ L+K G FEV+L R +F+ + M + E+ + R +
Sbjct: 554 RLPGFTELCQGDQIKLIKQGSFEVVLARYTALFEE--DGMFIPSMEMKIPRAMVRLMPMG 611
Query: 200 FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVL 259
+ F FA N L+D EIGL +++++++P R GL N+ V ++ G L +
Sbjct: 612 DFFEQQFIFARTFNQFKLTDKEIGLLTAVMIMNPDRHGLTNRRAVSKLAGLFIQCLYDSI 671
Query: 260 NQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQMT 297
Q+ PE L + ++ LP+++ +N+ HS+++ +M+
Sbjct: 672 VQHRPEGGGDVLFIQAMATLPEIQHINEAHSKQINNMKMS 711
>gi|346983456|dbj|BAK79142.1| peroxisome proliferator activated receptor alpha [Coturnix
japonica]
Length = 422
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 27/286 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N +E+ D + + + A+L F
Sbjct: 147 HNA-IRFGRMPRSEKAKLKAEILTGENY-----IEDSEMADLKSLAKRIHDAYLKN--FN 198
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 199 MNKVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 256
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 257 CTSVETVTELTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 315
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 316 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 375
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
+E+M+ + ++L L NHP+ L +L+ + DLR L H++
Sbjct: 376 IEKMQESIVHVLKLHLQTNHPDDTFLFPKLLQKMADLRQLVTEHAQ 421
>gi|405950647|gb|EKC18621.1| Putative nuclear hormone receptor HR3 [Crassostrea gigas]
Length = 685
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 15/252 (5%)
Query: 55 AAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPL 114
A +L D + V AH+ TC +T+++I+ H + P + ++
Sbjct: 434 AVDLMDPVMLGKAVTEAHMRTCLYTSEQIQ--------HIQSSITPQEII-----DAFKT 480
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
+ +L + +E+ + ++ ++EFAK +PGF L DDQ+ LLKAG FE+ L+R +FD
Sbjct: 481 MTRSQLWSEVAEKITIAVQQIIEFAKMLPGFMDLSQDDQIMLLKAGSFELALIRACRVFD 540
Query: 175 SQTNSMICLNGEV-LVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
+TNS+I N V L S + L + +F+F + L L+++++ LFS++V+I
Sbjct: 541 ERTNSIIFGNAIVPLSVFSAFNEEECHLREQVFEFVRNVIQLKLTESQLALFSAVVLIRA 600
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVA 293
R GL++ V+++ K+ L L + H + N+ L+ + LR L+ H L
Sbjct: 601 DRPGLKDIADVQKLNEKVLTALKQELGKTHANE-NVLTRLMQLTWTLRQLSSQHIVLLNK 659
Query: 294 FQMTEQQQQLAA 305
+++ + + A
Sbjct: 660 YKLQNPEVEFPA 671
>gi|291414302|ref|XP_002723400.1| PREDICTED: peroxisome proliferative activated receptor, alpha
[Oryctolagus cuniculus]
Length = 468
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ ++ + C + A D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKL-----KAESLACEQDAEGPGGADLRSLARRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF--SE 126
+K++ + A + H T C + TL + N +Q ++ ++ F +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANG--IQNKEAEVRIFHCCQ 277
Query: 127 RFS-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGS 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDTFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|148231394|ref|NP_001088389.1| RAR-related orphan receptor C [Xenopus laevis]
gi|54038343|gb|AAH84664.1| LOC495242 protein [Xenopus laevis]
Length = 400
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 23/235 (9%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
++ VV AH +TC F + ++ M A P S + E+ +
Sbjct: 160 LMQNVVCAHRETCKFHQENLQVMRWEAFS-------------PAEIQSFQQKTMDEMWER 206
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
+ I+ +VEFAKR+ GF L +DQ+ LLKAG E+LL+R++ F+ NS I
Sbjct: 207 CVCHITDAIQYIVEFAKRLNGFMELNPNDQIVLLKAGAMELLLIRMSRAFNC-YNSTIYF 265
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
G+ D S L+ +MFD L L+L++ E+ FSS+V++ PS+ L+ KE
Sbjct: 266 EGKYAPLDLFQSLGCNDLISAMFDLCHSLCDLNLTEHEMAFFSSMVLLDPSQPWLQEKEK 325
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD---LRTLNQLHSEKLVAFQ 295
VE + KLE +L + H E + LC LP L ++ QLH EKL F+
Sbjct: 326 VENLHVKLELSFRQLLRRTHRESI-LCK-----LPQKGRLLSICQLHMEKLNIFR 374
>gi|348501378|ref|XP_003438247.1| PREDICTED: nuclear receptor ROR-beta-like [Oreochromis niloticus]
Length = 499
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 127/240 (52%), Gaps = 15/240 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+ D + + ++V++HL+TC ++A+ ++ + YT P + +
Sbjct: 247 ITDLEHITQSIVKSHLETCQYSAEDMKRF-----NYVQYT--------PEETRTFQNKSA 293
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ + Q + + I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ C +
Sbjct: 294 EWMWQQCAHHITNAIQYVVEFAKRIAGFMDLCQNDQIILLKAGCLEVLLIRM-CRAFNSN 352
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+ I NG+ + L+ ++FD + L L LSD E+ LFS+ V+++P R
Sbjct: 353 NNSIFFNGKFAPAQFFKALGCDDLVSAVFDLGKGLCRLQLSDEEMALFSAAVLLTPDRPW 412
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L + V++++ K+ L H L ++ L +++S LP ++++ LH +KL F++
Sbjct: 413 LTEGQKVQKLQEKVYLALQHSLQKSGTSDEKL-DKMVSRLPVMKSICNLHIDKLEFFRLV 471
>gi|85376346|gb|ABC70398.1| peroxisome proliferator-activated receptor gamma [Lateolabrax
japonicus]
Length = 522
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 37/312 (11%)
Query: 20 HNAPVRFGRVPKREKARILAA----MQQSTNTKCTEKALAAELDDEQRMLSTVVRAHL-- 73
HNA +RFGR+P+ EK ++LA M+ +ALA L + + +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALARHLYEAYLKYFPLTKAKARA 256
Query: 74 -------DTCAFTADKIEPMLR-----RAREHPTYTACPSTLACPLNPNS----HPLQGQ 117
D F ++ ++ R+ P+ P T + + HP G
Sbjct: 257 ILSGKTGDNAPFVIHDMKSLMEGEQFINCRQMPSQEHQPQTSSLTIGHGGLTGVHP--GS 314
Query: 118 Q---------ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
+ Q R + +R++ EFAK IPGF L +DQVTLLK GV EVL++
Sbjct: 315 ECAVLDAVELRFFQSCQSRSAEAVREITEFAKSIPGFIDLDLNDQVTLLKYGVIEVLIIM 374
Query: 169 LACMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFS 226
+A + + + ++I + R+ + S F +M+ F+F+ + N L L D+++ LF
Sbjct: 375 MAPLMN-KDGTLISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFL 433
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
+++++S R GL N + +ER++ + + L L NHP+ + L A+L+ + DLR +
Sbjct: 434 AVIILSGDRPGLLNVKPIERLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTD 493
Query: 287 HSEKLVAFQMTE 298
H + + TE
Sbjct: 494 HVHFIQLLKKTE 505
>gi|290491185|ref|NP_001166475.1| peroxisome proliferator-activated receptor alpha [Cavia porcellus]
gi|3024415|sp|O35507.1|PPARA_CAVPO RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|2407894|emb|CAA03951.1| peroxisome proliferator-activated receptor alpha [Cavia porcellus]
Length = 467
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 24/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEV-----LTCDRDSEGAETADLKSLAKRIYEAYLKN--FH 219
Query: 80 ADKIEPMLRRARE---HPTY---------TACPSTLACPLNPNSHPLQGQQELLQDFSER 127
+K++ + A + HP + TA + +A ++ + + +
Sbjct: 220 MNKVKARIILAGKTSSHPLFVIHDMETLCTAEKTLMAKVVSDGIRDKEAEVRIFHCCQCV 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++
Sbjct: 280 SVETVTNLTEFAKAIPGFASLDLNDQVTLLKYGVYEAIFTMLSSTMN-KDGMLVAYGHGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ F+FA + N L L D++I LF + ++ R GL N + +E
Sbjct: 339 ITREFLKNLRKPFCDMMEPKFNFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIDHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+M+ + ++L L NHP+ L +L+ L DLR L H++ LV TE L
Sbjct: 399 KMQEAIVHVLKLHLQSNHPDDTFLFPKLLQKLADLRQLVTEHAQ-LVQVIKTESDAALHP 457
Query: 306 QQQQWH 311
Q+ +
Sbjct: 458 LLQEIY 463
>gi|332231710|ref|XP_003265037.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Nomascus leucogenys]
Length = 505
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|74136281|ref|NP_001028032.1| peroxisome proliferator-activated receptor gamma [Macaca mulatta]
gi|13431788|sp|O18924.1|PPARG_MACMU RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|2645731|gb|AAB87480.1| peroxisome proliferator-activated receptor gamma 2 [Macaca mulatta]
gi|355746519|gb|EHH51133.1| hypothetical protein EGM_10463 [Macaca fascicularis]
Length = 505
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|114585446|ref|XP_001153669.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Pan troglodytes]
Length = 505
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|20336229|ref|NP_056953.2| peroxisome proliferator-activated receptor gamma isoform 2 [Homo
sapiens]
gi|13432234|sp|P37231.3|PPARG_HUMAN RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|1432177|gb|AAB04028.1| peroxisome proliferator activated receptor gamma 2 [Homo sapiens]
gi|1711117|gb|AAC51248.1| ligand activated transcription factor PPARgamma2 [Homo sapiens]
gi|119584528|gb|EAW64124.1| peroxisome proliferative activated receptor, gamma, isoform CRA_b
[Homo sapiens]
gi|197692375|dbj|BAG70151.1| peroxisome proliferative activated receptor gamma isoform 2 [Homo
sapiens]
gi|197692673|dbj|BAG70300.1| peroxisome proliferative activated receptor gamma isoform 2 [Homo
sapiens]
Length = 505
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|410951728|ref|XP_003982545.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Felis catus]
Length = 505
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|397511913|ref|XP_003826306.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Pan paniscus]
Length = 505
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|66864891|ref|NP_001019803.1| peroxisome proliferator-activated receptor gamma [Canis lupus
familiaris]
gi|75068622|sp|Q4U3Q4.1|PPARG_CANFA RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|63195114|gb|AAY34942.1| peroxisome proliferator-activated receptor gamma [Canis lupus
familiaris]
Length = 505
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|47523814|ref|NP_999544.1| peroxisome proliferator-activated receptor gamma [Sus scrofa]
gi|13431782|sp|O62807.1|PPARG_PIG RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|3065957|gb|AAC14348.1| peroxisome proliferator-activated receptor gamma 2 [Sus scrofa]
gi|4378477|gb|AAD19577.1| peroxisome proliferator activated receptor gamma 2 [Sus scrofa]
gi|47678889|dbj|BAD20646.1| peroxisome proliferator-activated receptor gamma 2 [Sus scrofa]
Length = 504
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 256
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 257 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 316
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 317 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 375
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 376 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 435
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 436 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 495
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 496 LQEIYKD 502
>gi|350398884|ref|XP_003485338.1| PREDICTED: ecdysone-induced protein 78C-like [Bombus impatiens]
Length = 413
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP-----NSHPLQGQQ-ELL 121
V +AH C FT + ++R+ P T+ S A P +P + ++ Q+ L
Sbjct: 151 VSQAHHAHCGFTEESTRGIVRKPMIIPASTS--SQPASPEDPEAASSTAETVESQRIWLW 208
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q F+ R +P+++ VVEFAKR+PGF L DDQ+ L+K G FEV L ++ M + +SM
Sbjct: 209 QQFATRITPSVQRVVEFAKRVPGFCDLSQDDQLILIKVGFFEVWLSHISKM--TTDSSMT 266
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G + R + + ++ F LN LSDTE+GLFS V++ R GL +
Sbjct: 267 FEDGTYITRQQMELMYEPDFVSALMQFTSALNAHQLSDTELGLFSGAVLLG-ERPGLNDV 325
Query: 242 ELVERMRGKLENMLMHVLNQNH-----PEQMNLCAELISM---LPDLRTLNQLHSEKLVA 293
+ V+R++ +L L +NH C+ + S+ +P+LRTL H+ L
Sbjct: 326 KTVQRLQDRLLEALKVQALRNHTVSGEATSAGGCSGVSSVSQRIPELRTLGARHANLLDW 385
Query: 294 FQ 295
F+
Sbjct: 386 FR 387
>gi|426339484|ref|XP_004033680.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Gorilla gorilla gorilla]
Length = 505
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|296225870|ref|XP_002758685.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Callithrix jacchus]
Length = 505
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|386368305|gb|AFJ06911.1| peroxisome proliferator-activated receptor gamma [Columba livia]
Length = 475
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 23/308 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C + PLQ + + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLMMGEDQIKCK---HVSPLQEENKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIYTLLASL--TNKDGVLISDGQGF 345
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 VTREFLKSLRKPFCDYMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIMKKTETDMSLHP 465
Query: 306 QQQQWHGE 313
Q+ + +
Sbjct: 466 LLQEIYKD 473
>gi|395516634|ref|XP_003762492.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Sarcophilus harrisii]
Length = 475
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|224065487|ref|XP_002187946.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Taeniopygia guttata]
Length = 475
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 23/308 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C + PLQ + + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLMMGEDQIKCK---HVSPLQEENKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHP 465
Query: 306 QQQQWHGE 313
Q+ + +
Sbjct: 466 LLQEIYKD 473
>gi|344288073|ref|XP_003415775.1| PREDICTED: retinoic acid receptor beta isoform 2 [Loxodonta
africana]
Length = 455
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++ + +CTE + AELDD + T+ +AH +T P L + ++ T ++
Sbjct: 167 KEPSKQECTESYEMTAELDD---LTETIRKAHQET--------FPSLCQLGKYTTNSS-- 213
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 214 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 264
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 265 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 324
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 325 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 384
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 385 RSISAKGAERVITLKM 400
>gi|405965498|gb|EKC30867.1| Thyroid hormone receptor beta-A [Crassostrea gigas]
Length = 525
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 102/181 (56%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E Q +E +P+I VVEFAK +PGF L DDQ+ LLK+ E++ +R AC +D +
Sbjct: 326 EAWQQLAEAMTPSIVKVVEFAKNVPGFIQLFVDDQILLLKSCCMEIMCLRAACRYDPEKE 385
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
++ NG L + + S L++ +F+FA L+ L L TE+ L ++++++ RSGL
Sbjct: 386 TITMHNGVCLHKSQLKSEGLGLLVEPIFEFAVGLSKLKLDKTELALLAAVLLMQSDRSGL 445
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ E VE+++ + + P Q A+++ + DLRT++ H+E+++ ++
Sbjct: 446 KEPEAVEKLQDSILGAFKRYIATKRPHQPVHWAKILMKVTDLRTISTRHAERVLCIRLDH 505
Query: 299 Q 299
Q
Sbjct: 506 Q 506
>gi|189239421|ref|XP_974561.2| PREDICTED: similar to HR3 [Tribolium castaneum]
Length = 499
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 124/232 (53%), Gaps = 22/232 (9%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC ++ + I M R+ P L+ L + +EL + ++
Sbjct: 259 TISDAHTRTCLYSLEHIHEMFRK----------PHDLSRLL---YYKNMAHEELWLECAQ 305
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D N + L G+
Sbjct: 306 KLTTIIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAIIRMSRYLDLSQNCV--LYGD 363
Query: 187 VLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ +S+ L+ +F+ ++ + L L++TE+ L+S+ V++SP R GL+
Sbjct: 364 TMLPQDAFFTSDTAEMKLVTCVFEVSKSIAELKLTETELALYSACVLLSPDRPGLKGIGE 423
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKL 291
+ R+ + L L++NH + +C L++ +P LR ++ LH + L
Sbjct: 424 ISRLSQAVVRALRLELDRNHSMPIKGDVTVCDALLTKIPTLREISMLHMDAL 475
>gi|270010992|gb|EFA07440.1| hormone receptor in 46-like protein [Tribolium castaneum]
Length = 529
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 124/232 (53%), Gaps = 22/232 (9%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC ++ + I M R+ P L+ L + +EL + ++
Sbjct: 289 TISDAHTRTCLYSLEHIHEMFRK----------PHDLSRLL---YYKNMAHEELWLECAQ 335
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D N + L G+
Sbjct: 336 KLTTIIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAIIRMSRYLDLSQNCV--LYGD 393
Query: 187 VLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ +S+ L+ +F+ ++ + L L++TE+ L+S+ V++SP R GL+
Sbjct: 394 TMLPQDAFFTSDTAEMKLVTCVFEVSKSIAELKLTETELALYSACVLLSPDRPGLKGIGE 453
Query: 244 VERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLNQLHSEKL 291
+ R+ + L L++NH + +C L++ +P LR ++ LH + L
Sbjct: 454 ISRLSQAVVRALRLELDRNHSMPIKGDVTVCDALLTKIPTLREISMLHMDAL 505
>gi|33568990|emb|CAD88282.1| peroxisome proliferator activated receptor alpha [Mesocricetus
auratus]
Length = 468
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF--SE 126
+K++ + A + H T C + TL + N +Q ++ ++ F +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANG--IQNKEAEVRIFHCCQ 277
Query: 127 RFS-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 278 CMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + + F +++ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKNLRKPFCDILEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGY 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|301771798|ref|XP_002921313.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Ailuropoda melanoleuca]
Length = 529
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 21/297 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 229 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 281
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 282 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 341
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 342 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 400
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 401 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 460
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 461 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSL 517
>gi|403270244|ref|XP_003927098.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Saimiri boliviensis boliviensis]
Length = 505
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|124013557|gb|ABM88028.1| RORC [Macaca nemestrina]
Length = 442
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 24/223 (10%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 236 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 283
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 284 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 337
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 338 VLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 396
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQM 267
++++V+I+ +R GL+ K VE+++ LE H L + H + +
Sbjct: 397 YTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSI 439
>gi|47678881|dbj|BAD20642.1| peroxisome proliferator-activated receptor gamma 1a [Sus scrofa]
gi|47678883|dbj|BAD20643.1| peroxisome proliferator-activated receptor gamma 1b [Sus scrofa]
gi|47678885|dbj|BAD20644.1| peroxisome proliferator-activated receptor gamma 1c [Sus scrofa]
gi|47678887|dbj|BAD20645.1| peroxisome proliferator-activated receptor gamma 1d [Sus scrofa]
Length = 475
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|121483868|gb|ABM54232.1| RORC [Pan paniscus]
Length = 365
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 115/220 (52%), Gaps = 14/220 (6%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + + T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 153 SPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNI 199
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 200 FSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 259
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI
Sbjct: 260 VVLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIA 318
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH 263
L++++V+I+ R GL+ K VE+++ LE H L + H
Sbjct: 319 LYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTH 358
>gi|124054167|gb|ABM89275.1| RORC [Pongo pygmaeus]
Length = 442
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 24/223 (10%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 236 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 283
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 284 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 337
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 338 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 396
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQM 267
++++V+I+ R GL+ K VE+++ LE H L + H + +
Sbjct: 397 YTALVLINAYRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSI 439
>gi|62898788|dbj|BAD97248.1| peroxisome proliferative activated receptor gamma isoform 2 variant
[Homo sapiens]
Length = 478
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 178 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 226
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 227 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 286
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 287 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 345
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 346 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 405
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 406 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 465
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 466 LHPLLQEIYKD 476
>gi|157679164|dbj|BAF80457.1| peroxisome proliferator-activated receptor alpha [Pagrus major]
Length = 469
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 138/292 (47%), Gaps = 20/292 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A M T + E A D++ + + A+L
Sbjct: 169 HNA-IRFGRMPQSEKLKLKAEM--VTGDREVEDPQVA---DQKTLARQIYEAYLKNFNMN 222
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L P T TL + ++ L+ ++ ++ F
Sbjct: 223 KAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGSAASLKDREAEVRIFHCCQCTS 282
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA + + ++ +
Sbjct: 283 VETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFAMLASSMN-KDGLLVAYGSGFI 341
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F +M+ F FA + NGL L D+++ LF + ++ R GL N +ER
Sbjct: 342 TREFLKSLRRPFSDMMEPKFQFAMKFNGLELDDSDLALFVAAIICCGDRPGLVNVAHIER 401
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
M+ + +L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 402 MQESIVQVLQLHLLANHPDDTFLFPKLLQKLADLRQLVTEHAQLVQEIKKTE 453
>gi|22003526|gb|AAM88773.1| peroxisome proliferator activated receptor-gamma 1 [Anas
platyrhynchos]
Length = 475
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA R N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVRFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|60654177|gb|AAX29781.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|60830772|gb|AAX36944.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
Length = 476
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 223
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 224 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 283
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 284 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 342
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 343 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 402
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 403 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 462
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 463 LHPLLQEIYKD 473
>gi|334338609|ref|XP_001376147.2| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Monodelphis domestica]
Length = 475
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKSIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|151413583|gb|ABS11249.1| thyroid hormone receptor [Branchiostoma floridae]
Length = 431
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q++ +E +P I VVEFAK+IPGF+ L DDQV LLK FEV+ +R A FD Q
Sbjct: 229 QDIFSHLAEVITPAIIKVVEFAKQIPGFTKLVPDDQVALLKNCCFEVMCLRAASRFDKQR 288
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ G + ++ + L + +F+FAE L+ LHL DTE+ L + +++ R G
Sbjct: 289 RTITMFGGLTVTKEQVSQGGLGRLAEPLFEFAEGLSQLHLDDTEVAL-LAALLVVADRPG 347
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE--KLVAFQ 295
++++E ++R++ + + + + P Q L +++ + DLR L+ H+E KLV +
Sbjct: 348 VQDQESIDRLQDIILTAYKNYITRQRPHQPVLWGKILMKVTDLRALSVAHAEQVKLVKME 407
Query: 296 MT 297
T
Sbjct: 408 CT 409
>gi|2738904|gb|AAB94566.1| AamEcRA1 [Amblyomma americanum]
Length = 560
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 366 QRRFQHITEITILTVQLIVEFSKRVPGFDTLAREDQITLLKACSSEVMMLRGARKYDVKT 425
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 426 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPS 484
Query: 238 LRNKELVERMR-GKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + VER++ +E + M+ ++NH P N A L+S+L +LRTL +++E + F
Sbjct: 485 LVDPHKVERIQEYYIETLRMY--SENHRPPGKNYFARLLSILTELRTLGNMNAE--MCFS 540
Query: 296 MTEQQQQL 303
+ Q ++L
Sbjct: 541 LKVQNKKL 548
>gi|410951730|ref|XP_003982546.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Felis catus]
Length = 475
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|332231708|ref|XP_003265036.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Nomascus leucogenys]
gi|332231712|ref|XP_003265038.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Nomascus leucogenys]
gi|332231714|ref|XP_003265039.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
4 [Nomascus leucogenys]
gi|441665312|ref|XP_004091803.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Nomascus leucogenys]
gi|441665315|ref|XP_004091804.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Nomascus leucogenys]
Length = 477
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 229
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 230 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 289
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 290 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 348
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 349 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 408
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 409 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 468
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 469 LQEIYKD 475
>gi|47211198|emb|CAF95270.1| unnamed protein product [Tetraodon nigroviridis]
Length = 398
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 24/294 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLS-TVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A M +K + + +Q+ L+ + A+L
Sbjct: 98 HNA-IRFGRMPQSEKLKLKAEMVT------VDKVVVDPREADQKTLARQIYEAYLKNFNM 150
Query: 79 TADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHPLQGQQELLQDF---SER 127
K +L P T TL + ++ L+ ++ ++ F
Sbjct: 151 NKAKARSILSGKTSTPPFVIHDMETLQLAEQTLVAKMVSSAGTLKDREAEVRIFHCCQYT 210
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGE 186
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA CM ++ ++
Sbjct: 211 SVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFAMLASCM--NKDGLLVAYGSG 268
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S F +M+ F FA + NGL L D+++ LF + ++ R GL N +
Sbjct: 269 FITREFLKSLRRPFSDMMEPKFQFAMKFNGLGLDDSDLALFVAAIICCGDRPGLVNVTHI 328
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
ERM+ + +L L NHP+ L L+ L DLR L H++ + + TE
Sbjct: 329 ERMQESIVRVLQLHLLANHPDDAFLFPRLLQKLADLRQLVTEHAQLVQEIKKTE 382
>gi|397511915|ref|XP_003826307.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
2 [Pan paniscus]
Length = 477
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 225
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 226 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 285
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 286 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 344
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 345 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 404
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 405 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 464
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 465 LHPLLQEIYKD 475
>gi|338714446|ref|XP_001492461.2| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 1 [Equus caballus]
Length = 528
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 21/297 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 228 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 280
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 281 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 340
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 341 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 399
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 400 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 459
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 460 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSL 516
>gi|410036561|ref|XP_003950079.1| PREDICTED: peroxisome proliferator-activated receptor gamma [Pan
troglodytes]
gi|426339482|ref|XP_004033679.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Gorilla gorilla gorilla]
gi|426339486|ref|XP_004033681.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Gorilla gorilla gorilla]
Length = 477
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 225
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 226 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 285
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 286 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 344
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 345 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 404
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 405 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 464
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 465 LHPLLQEIYKD 475
>gi|354502789|ref|XP_003513464.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
[Cricetulus griseus]
Length = 468
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF--SE 126
+K++ + A + H T C + TL + N +Q ++ ++ F +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANG--IQNKEAEVRIFHCCQ 277
Query: 127 RFS-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 278 CMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + + F +++ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKNLRKPFCDILEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGY 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTETDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|195591221|ref|XP_002085341.1| GD12358 [Drosophila simulans]
gi|194197350|gb|EDX10926.1| GD12358 [Drosophila simulans]
Length = 433
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 61/74 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 316 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 375
Query: 84 EPMLRRAREHPTYT 97
M +RAR+ P+Y+
Sbjct: 376 SAMRQRARDCPSYS 389
>gi|15723732|gb|AAL05262.1| peroxisome proliferator-activated receptor gamma 2 [Macaca
fascicularis]
Length = 505
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVFISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|149728268|ref|XP_001492480.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 2 [Equus caballus]
Length = 474
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 174 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 226
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 227 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 286
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 287 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 345
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 405
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 465
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 466 LQEIYKD 472
>gi|116284368|ref|NP_005028.4| peroxisome proliferator-activated receptor gamma isoform 1 [Homo
sapiens]
gi|116284370|ref|NP_619726.2| peroxisome proliferator-activated receptor gamma isoform 1 [Homo
sapiens]
gi|116284373|ref|NP_619725.2| peroxisome proliferator-activated receptor gamma isoform 1 [Homo
sapiens]
gi|1490313|emb|CAA62152.1| peroxisome proliferator activated receptor gamma [Homo sapiens]
gi|13905056|gb|AAH06811.1| Peroxisome proliferator-activated receptor gamma [Homo sapiens]
gi|17978516|gb|AAA80314.2| peroxisome proliferator activated receptor gamma [Homo sapiens]
gi|30583401|gb|AAP35945.1| peroxisome proliferative activated receptor, gamma [Homo sapiens]
gi|60654873|gb|AAX32001.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|119584527|gb|EAW64123.1| peroxisome proliferative activated receptor, gamma, isoform CRA_a
[Homo sapiens]
gi|123980410|gb|ABM82034.1| peroxisome proliferative activated receptor, gamma [synthetic
construct]
gi|123995227|gb|ABM85215.1| peroxisome proliferative activated receptor, gamma [synthetic
construct]
gi|261859986|dbj|BAI46515.1| peroxisome proliferator-activated receptor gamma [synthetic
construct]
gi|283132454|dbj|BAI63629.1| peroxisome proliferative activated receptor gamma isoform 6 variant
[Homo sapiens]
gi|325495543|gb|ADZ17377.1| peroxisome proliferator-activated nuclear receptor gamma variant 1
[Homo sapiens]
gi|428229099|dbj|BAM71699.1| peroxisome proliferative activated receptor gamma [Homo sapiens]
Length = 477
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 225
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 226 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 285
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 286 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 344
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 345 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 404
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 405 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 464
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 465 LHPLLQEIYKD 475
>gi|3024414|sp|O19052.1|PPARG_RABIT RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|2231587|gb|AAB96380.1| peroxisome proliferator activated receptor gamma-1 [Oryctolagus
cuniculus]
Length = 475
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPEASQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|197098440|ref|NP_001124655.1| peroxisome proliferator-activated receptor gamma [Pongo abelii]
gi|55725294|emb|CAH89512.1| hypothetical protein [Pongo abelii]
Length = 477
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 229
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 230 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 289
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 290 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 348
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 349 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 408
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 409 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 468
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 469 LQEIYKD 475
>gi|1945622|dbj|BAA18949.1| PPAR gamma2 [Homo sapiens]
Length = 506
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 20/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+ + EK ++LA + + E A D Q + + +++ + T
Sbjct: 205 HNA-IRFGRIAQAEKEKLLAEISSDIDQLNPESA-----DLRQALAKHLYDSYIKSFPLT 258
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 259 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 318
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 319 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 377
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 378 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 437
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 438 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 497
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 498 LQEIYKD 504
>gi|2645733|gb|AAB87481.1| peroxisome proliferator-activated receptor gamma 1-a [Macaca
mulatta]
gi|2645735|gb|AAB87482.1| peroxisome proliferator-activated receptor gamma 1-b [Macaca
mulatta]
Length = 475
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|281347607|gb|EFB23191.1| hypothetical protein PANDA_010204 [Ailuropoda melanoleuca]
Length = 478
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 178 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 230
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 231 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 290
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 291 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 349
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 350 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 409
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 410 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 469
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 470 LQEIYKD 476
>gi|17380507|sp|P10826.2|RARB_HUMAN RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=HBV-activated protein; AltName: Full=Nuclear
receptor subfamily 1 group B member 2; AltName:
Full=RAR-epsilon
Length = 455
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 167 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 213
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 214 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 264
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 265 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 324
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 325 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 384
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 385 RSISAKGAERVITLKM 400
>gi|1490314|emb|CAA62153.1| peroxisome proliferator activated receptor gamma [Homo sapiens]
gi|48762805|gb|AAN38992.2| peroxisome proliferative activated receptor gamma [Homo sapiens]
gi|60819360|gb|AAX36497.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|61363113|gb|AAX42337.1| peroxisome proliferative activated receptor gamma [synthetic
construct]
gi|158254594|dbj|BAF83270.1| unnamed protein product [Homo sapiens]
Length = 475
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 223
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 224 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 283
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 284 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 342
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 343 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 402
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 403 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 462
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 463 LHPLLQEIYKD 473
>gi|355747102|gb|EHH51716.1| hypothetical protein EGM_11148 [Macaca fascicularis]
Length = 455
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 167 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 213
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 214 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 264
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 265 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 324
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 325 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 384
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 385 RSISAKGAERVITLKM 400
>gi|124111141|gb|ABM91950.1| RORC [Pan troglodytes]
Length = 442
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 24/223 (10%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 236 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 283
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 284 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 337
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 338 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 396
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQM 267
++++V+I+ R GL+ K VE+++ LE H L + H + +
Sbjct: 397 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSI 439
>gi|366984666|gb|AEX09237.1| peroxisome proliferator-activated receptor gamma [Podarcis siculus]
Length = 461
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 23/293 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 176 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKLLYDSYIKSFPLT 228
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLN----PNSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + P+Q Q + + Q R
Sbjct: 229 KAKARAILTGKATDKSPFVIYDMNSLKMGEDQIKCKHLTPMQEQNKEVAIRIFQRCQFRS 288
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA M + + ++ NG+
Sbjct: 289 VEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASMMNK--DGVLISNGQGF 346
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLINVKPIE 406
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ L L L NHPE L A+L+ + DLR + H + L + T+
Sbjct: 407 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIEKTD 459
>gi|297287021|ref|XP_001092337.2| PREDICTED: retinoic acid receptor beta isoform 1 [Macaca mulatta]
Length = 458
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 170 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 216
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 217 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 267
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 268 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 327
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 328 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 387
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 388 RSISAKGAERVITLKM 403
>gi|25990190|gb|AAN75018.1| peroxisome proliferator activated receptor gamma-2 [Bos taurus]
Length = 505
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L ++TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKITETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|395847245|ref|XP_003796291.1| PREDICTED: peroxisome proliferator-activated receptor gamma
[Otolemur garnettii]
Length = 505
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + P+Q Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPVQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|301782149|ref|XP_002926489.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Ailuropoda
melanoleuca]
Length = 455
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|61741153|gb|AAX54532.1| retinoic acid receptor [synthetic construct]
Length = 267
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 103/185 (55%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 62 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKAACLDILILRICT 121
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 122 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDTETGLLSAICLI 181
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + + P + ++ +++ + DLR+++ +E++
Sbjct: 182 CGDRQDLEEPEKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERV 241
Query: 292 VAFQM 296
+ +M
Sbjct: 242 ITLKM 246
>gi|296225874|ref|XP_002758687.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
3 [Callithrix jacchus]
Length = 475
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|194389368|dbj|BAG61645.1| unnamed protein product [Homo sapiens]
Length = 441
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 167 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 213
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 214 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 264
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 265 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 324
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 325 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 384
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 385 RSISAKGAERVITLKM 400
>gi|403270242|ref|XP_003927097.1| PREDICTED: peroxisome proliferator-activated receptor gamma isoform
1 [Saimiri boliviensis boliviensis]
Length = 475
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|216409692|dbj|BAH02283.1| peroxisome proliferator activated receptor gamma [Homo sapiens]
Length = 477
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 225
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 226 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 285
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 286 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 344
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 345 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 404
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 405 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMG 464
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 465 LHPLLQEIYKD 475
>gi|327265851|ref|XP_003217721.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Anolis carolinensis]
Length = 475
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 23/308 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRSLAKLLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLN----PNSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + P+Q Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDQIKCKHLAPMQEQNKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA M + + ++ +G+
Sbjct: 288 VEAVQEITEFAKSIPGFVSLDLNDQVTLLKYGVHEIIYTLLASMMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSLHP 465
Query: 306 QQQQWHGE 313
Q+ + +
Sbjct: 466 LLQEIYKD 473
>gi|133494|sp|P22605.1|RARB_MOUSE RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
Length = 482
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 251 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 310
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 311 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 370
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 371 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 427
>gi|355560071|gb|EHH16799.1| hypothetical protein EGK_12147 [Macaca mulatta]
Length = 455
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 167 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 213
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 214 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 264
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 265 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 324
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 325 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 384
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 385 RSISAKGAERVITLKM 400
>gi|1173170|sp|P18516.2|RARG_NOTVI RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3; AltName: Full=Retinoic acid receptor delta;
Short=RAR-delta
gi|64130|emb|CAA49564.1| retinoic acid receptor delta 1a [Notophthalmus viridescens]
Length = 505
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 271 HRVQLDLGLWHKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICT 330
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 331 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 390
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 391 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 450
Query: 292 VAFQM 296
+ +M
Sbjct: 451 ITLKM 455
>gi|194440881|gb|ACF70732.1| peroxisome proliferator activated receptor gamma [Ctenopharyngodon
idella]
Length = 522
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 143/298 (47%), Gaps = 27/298 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + E A D + + + ++L T
Sbjct: 216 HNA-IRFGRMPQAEKEKLLAEFSTDMDHMHPESA------DLRALARHLYESYLKYFPLT 268
Query: 80 ADKIEPMLRRA---------REHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERF-- 128
K +L + + T + C P + ++Q+ RF
Sbjct: 269 KAKARAILSGKTSDNAPFVIHDMKSLTEGEHMINCRQMPMQEHRRSDMGIMQEVELRFFH 328
Query: 129 ------SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + +V EFAK IPGF L +DQVTLLK GV EVL++ +A + + + ++I
Sbjct: 329 SCQSRSAEAVSEVTEFAKSIPGFVNLDLNDQVTLLKYGVIEVLIIMMAPLMN-KDGTLIS 387
Query: 183 LNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
+ R+ + S F +M+ F+F+ + N L L D+++ LF +++++S R GL N
Sbjct: 388 YGQIFMTREFLKSLRKPFCEMMEPKFEFSVKFNMLELDDSDMALFLAVIILSGDRPGLLN 447
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ +E ++ + + L L NHP+ + L A+++ + DLR L H + + + TE
Sbjct: 448 VKPIEDLQETVLHSLELQLKTNHPDSLQLFAKVLQKMTDLRQLVTDHVQLIQLMKETE 505
>gi|64131|emb|CAA49565.1| retinoic acid receptor delta 1b [Notophthalmus viridescens]
gi|64135|emb|CAA35603.1| retinoic acid receptor delta [Notophthalmus viridescens]
gi|226521|prf||1516344B retinoic acid receptor delta
Length = 454
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 220 HRVQLDLGLWHKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICT 279
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 280 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 339
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 340 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 399
Query: 292 VAFQM 296
+ +M
Sbjct: 400 ITLKM 404
>gi|126723352|ref|NP_001075617.1| peroxisome proliferator-activated receptor gamma [Oryctolagus
cuniculus]
gi|27501686|gb|AAO13014.1| PPAR gamma 1 [Oryctolagus cuniculus]
gi|27501688|gb|AAO13015.1| PPAR gamma 3 [Oryctolagus cuniculus]
Length = 475
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPGAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPEASQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|449266326|gb|EMC77390.1| Peroxisome proliferator-activated receptor gamma [Columba livia]
Length = 475
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 23/308 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C + PLQ + + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLMMGEDQIKCK---HVSPLQEENKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDYMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIMKKTETDMSLHP 465
Query: 306 QQQQWHGE 313
Q+ + +
Sbjct: 466 LLQEIYKD 473
>gi|148672481|gb|EDL04428.1| peroxisome proliferator activated receptor alpha, isoform CRA_b
[Mus musculus]
Length = 496
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 23/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 196 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLGKRIHEAYLKN--FN 247
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 248 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCM 307
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 308 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGNGF 366
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 367 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 426
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 427 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAAL 484
>gi|338715049|ref|XP_003363197.1| PREDICTED: retinoic acid receptor beta [Equus caballus]
Length = 455
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|21552435|gb|AAL05267.1| peroxisome proliferator-activated receptor gamma 4 [Macaca
fascicularis]
gi|21552439|gb|AAL05269.1| peroxisome proliferator-activated receptor gamma 6 [Macaca
fascicularis]
Length = 483
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 29/311 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 183 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 231
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 232 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 291
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + I
Sbjct: 292 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVFISEG 350
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 351 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 410
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 411 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 470
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 471 LHPLLQEIYKD 481
>gi|345789100|ref|XP_003433175.1| PREDICTED: retinoic acid receptor beta [Canis lupus familiaris]
Length = 455
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|291399722|ref|XP_002716265.1| PREDICTED: retinoic acid receptor, beta isoform 1 [Oryctolagus
cuniculus]
Length = 455
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|218156240|dbj|BAH03352.1| retinoic acid receptor beta [Lepisosteus platyrhincus]
Length = 360
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 129/250 (51%), Gaps = 23/250 (9%)
Query: 48 KCTEK-ALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACP 106
+CTE L AEL+D +++ + +AH +T P L + ++ T ++
Sbjct: 82 ECTESYELTAELED---LIAKIRKAHQETF--------PSLCQLGKYTTNSSA------- 123
Query: 107 LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L+
Sbjct: 124 ----DHRVRLDLGLWDKFSELATKCIIKIVEFAKRVPGFTGLTIADQITLLKAACLDILI 179
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
+R+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S
Sbjct: 180 LRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLS 239
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
+I +IS R L V++++ L L + + P + ++ +++ + DLR+++
Sbjct: 240 AICLISGDRQDLEEPAKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAK 299
Query: 287 HSEKLVAFQM 296
+E+++ +M
Sbjct: 300 GAERVITLKM 309
>gi|12584576|emb|CAA73382.2| peroxisome proliferator activated receptor (PPAR) gamma 2 [Rattus
norvegicus]
Length = 505
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|390334935|ref|XP_779976.3| PREDICTED: retinoic acid receptor beta-like [Strongylocentrotus
purpuratus]
Length = 409
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 24/245 (9%)
Query: 53 ALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH 112
+ E++D +L V+RAH DT + HP + A P +P S+
Sbjct: 158 VIPTEIED---ILQEVLRAHRDT-----------FPQRPLHPIHNADDEEEGVPNHPVSN 203
Query: 113 PLQGQQ------ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
+GQ + + D S R I VV+FAK++PGF L DQ+TLLKA ++++
Sbjct: 204 -FKGQDIDMVMFDYVTDMSSR---AIVMVVDFAKKLPGFLSLSTQDQITLLKASCLDIMI 259
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
+R+ F+ Q S+ G L + + + L+D +F FA L+ +H+ +TEI L S
Sbjct: 260 LRICSRFNPQDASVTFTTGLTLTQGQLKAGGFGSLLDVIFTFASSLSRMHIDETEIALLS 319
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
+I +IS R+GL + +E+M+ L L + + P++ + A+L+ + DLR ++
Sbjct: 320 AICLISEDRTGLEDAPRIEKMQEPLLEGLRLYVRKRRPKESHFFAKLLMKITDLRCISVK 379
Query: 287 HSEKL 291
+EK+
Sbjct: 380 SAEKV 384
>gi|8895467|gb|AAF80976.1| retinoic acid receptor gamma 2I [Ambystoma mexicanum]
Length = 446
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 212 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICT 271
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 272 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 331
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 332 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 391
Query: 292 VAFQM 296
+ +M
Sbjct: 392 ITLKM 396
>gi|8895462|gb|AAF80975.1| retinoic acid receptor gamma 2 [Ambystoma mexicanum]
Length = 441
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|444705527|gb|ELW46949.1| Peroxisome proliferator-activated receptor gamma, partial [Tupaia
chinensis]
Length = 375
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 20/303 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
+RFGR+P+ EK ++LA + + E A D + + + +++ + T K
Sbjct: 78 IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLTKAKA 131
Query: 84 EPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERFSPTI 132
+L + + P ++L + PLQ Q + + Q R +
Sbjct: 132 RAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAV 191
Query: 133 RDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDS 192
+++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I + R+
Sbjct: 192 QEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFMTREF 250
Query: 193 IHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
+ S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E ++
Sbjct: 251 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 310
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQW 310
L L L NHPE L A+L+ + DLR + H + L + TE L Q+
Sbjct: 311 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEI 370
Query: 311 HGE 313
+ +
Sbjct: 371 YKD 373
>gi|15723730|gb|AAL05261.1| peroxisome proliferator-activated receptor gamma 1 [Macaca
fascicularis]
gi|15723734|gb|AAL05263.1| peroxisome proliferator-activated receptor gamma 3 [Macaca
fascicularis]
gi|21552437|gb|AAL05268.1| peroxisome proliferator-activated receptor gamma 5 [Macaca
fascicularis]
gi|21552441|gb|AAL05270.1| peroxisome proliferator-activated receptor gamma 7 [Macaca
fascicularis]
Length = 475
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + I +
Sbjct: 288 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVFISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|6981386|ref|NP_037256.1| peroxisome proliferator-activated receptor gamma isoform 1 [Rattus
norvegicus]
gi|13431783|sp|O88275.2|PPARG_RAT RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|5107415|gb|AAD40119.1|AF156666_1 peroxisome proliferator-activated receptor gamma 2 [Rattus
norvegicus]
gi|4115709|dbj|BAA36485.1| PPAR gamma2 [Rattus norvegicus]
gi|149049700|gb|EDM02154.1| peroxisome proliferator activated receptor gamma, isoform CRA_a
[Rattus norvegicus]
Length = 505
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|71060009|emb|CAJ18548.1| Pparg [Mus musculus]
Length = 505
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|187960103|ref|NP_035276.2| peroxisome proliferator-activated receptor gamma isoform 2 [Mus
musculus]
gi|18255316|gb|AAH21798.1| Peroxisome proliferator activated receptor gamma [Mus musculus]
gi|32395567|gb|AAO45097.1| peroxisome proliferator-activated receptor gamma isoform 2 [Mus
musculus]
gi|32395569|gb|AAO45098.1| peroxisome proliferator-activated receptor gamma isoform 2 [Mus
musculus]
gi|32395964|gb|AAP42200.1| peroxisome proliferator-activated receptor gamma transcript 2 [Mus
musculus]
gi|157890439|dbj|BAF80899.1| peroxisome proliferator-activated receptor gamma [Mus musculus]
gi|157890441|dbj|BAF80900.1| peroxisome proliferator-activated receptor gamma [Mus musculus]
Length = 505
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|23504267|emb|CAA52153.2| retinoic acid receptor gamma 2 isoform [Gallus gallus]
Length = 425
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 206 HRVQLDPGLWDKFSELATKCIIKIVEFAKRLPGFTALSIADQITLLKAACLDILMLRICT 265
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 266 RYTLEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E VER++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 326 CGDRQDLEEPEQVERLQEPLLEALRVYARRRRPSKPHMFPRMLMKITDLRGISTKGAERA 385
Query: 292 VAFQM 296
+ +M
Sbjct: 386 ITLKM 390
>gi|301614419|ref|XP_002936679.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 476
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 239 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 298
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA++L L + DTE GL S+I +I
Sbjct: 299 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFADQLLPLEMDDTETGLLSAICLI 358
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E VE+++ L L + P++ + ++ + DLR ++ +E+
Sbjct: 359 CGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERA 418
Query: 292 VAFQM 296
+ +M
Sbjct: 419 ITLKM 423
>gi|218156234|dbj|BAH03349.1| retinoic acid receptor 2 [Mordacia mordax]
Length = 385
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 102/185 (55%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L SE + I +VEFAKR+PGF L DQ+TLLKA ++L++R+
Sbjct: 125 HRVQLDLGLWDKLSELATKCIIKIVEFAKRLPGFVNLSIADQITLLKAACLDILILRICT 184
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL ++I +I
Sbjct: 185 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLSVDDTEAGLLAAICLI 244
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
S R L E VER++ L + + + P++ ++ +L+ + DLR ++ +E++
Sbjct: 245 SGDRQDLEEPEKVERLQEPLLEAMKVYVRRRRPDKPHMFPKLLMKITDLRGISAKGAERV 304
Query: 292 VAFQM 296
+ +M
Sbjct: 305 ITLKM 309
>gi|117570937|gb|ABK39948.1| peroxisome proliferator activated receptor gamma 2 [Mus musculus]
Length = 505
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|307200344|gb|EFN80598.1| Ecdysone-induced protein 78C [Harpegnathos saltator]
Length = 382
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 16/243 (6%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP-----NSHPLQGQQ 118
++ V +AH C FT D + ++R+ P + S A P +P + ++ Q+
Sbjct: 119 LILQVSQAHQAHCGFTEDSVRGLVRKPMIIPASNS--SQPASPEDPEAASSTAETVESQR 176
Query: 119 -ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
L Q F+ R +P+++ VVEFAKR+PGF L DDQ+ L+K G FEV L ++ M +
Sbjct: 177 IWLWQQFAVRVTPSVQRVVEFAKRVPGFCELSQDDQLILIKVGFFEVWLSHISKM--TTD 234
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+SM +G + R + + ++ LN L+D E+GLFS+ V++S R G
Sbjct: 235 SSMTFEDGTYITRQQMELMYEPDFVTALMQVTSTLNAHQLADAELGLFSAAVLLS-ERPG 293
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMN----LCAELISM-LPDLRTLNQLHSEKLV 292
L + + V++++ +L L ++++ N +C+ IS +P+LR L H+ L
Sbjct: 294 LNDVKAVQKLQDRLLEALRVEVSRSQSAASNDISSVCSGSISQRIPELRALGARHANLLD 353
Query: 293 AFQ 295
F+
Sbjct: 354 WFR 356
>gi|301614421|ref|XP_002936680.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 222 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 281
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA++L L + DTE GL S+I +I
Sbjct: 282 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFADQLLPLEMDDTETGLLSAICLI 341
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E VE+++ L L + P++ + ++ + DLR ++ +E+
Sbjct: 342 CGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERA 401
Query: 292 VAFQM 296
+ +M
Sbjct: 402 ITLKM 406
>gi|35883|emb|CAA30262.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLQPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|260807353|ref|XP_002598473.1| hypothetical protein BRAFLDRAFT_282854 [Branchiostoma floridae]
gi|229283746|gb|EEN54485.1| hypothetical protein BRAFLDRAFT_282854 [Branchiostoma floridae]
Length = 419
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q++ +E +P I VVEFAK+IPGF+ L DDQV LLK FEV+ +R A FD Q
Sbjct: 217 QDIFSHLAEVITPAIIKVVEFAKQIPGFTKLVPDDQVALLKNCCFEVMCLRAASRFDKQR 276
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ G + ++ + L + +F+FAE L+ LHL DTE+ L + +++ R G
Sbjct: 277 RTITMFGGLTVTKEQVSQGGLGRLAEPLFEFAEGLSQLHLDDTEVAL-LAALLVVADRPG 335
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE--KLVAFQ 295
++++E ++R++ + + + + P Q L +++ + DLR L+ H+E KLV +
Sbjct: 336 VQDQESIDRLQDIILTAYKNYITRQRPHQPVLWGKILMKVTDLRALSVAHAEQVKLVKME 395
Query: 296 MT 297
T
Sbjct: 396 CT 397
>gi|146152181|gb|ABQ08067.1| peroxisomer proliferator activated receptor alpha [Anas
platyrhynchos]
Length = 468
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + T E +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEIL--TGESYIED---SEMADLKSLAKRIHDAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDFSERF 128
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 129 SPTIRDVVEF---AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
++ V E AK IPGFS L +DQVTLLK GV+E + LA + + + ++
Sbjct: 278 CTSVETVTELTESAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQESIVHVLKLHLQTNHPDDTFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAHL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>gi|350591001|ref|XP_003483182.1| PREDICTED: retinoic acid receptor beta [Sus scrofa]
Length = 455
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFASQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRRRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|148667109|gb|EDK99525.1| peroxisome proliferator activated receptor gamma [Mus musculus]
Length = 504
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 256
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 257 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 316
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 317 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 375
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 376 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 435
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 436 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 495
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 496 LQEIYKD 502
>gi|3150144|emb|CAA06917.1| peroxisome proliferator activated receptor alpha [Cavia porcellus]
Length = 467
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 20/304 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEV-----LTCDRDSEGAETADLKSLAKRIYEAYLKNFHMK 221
Query: 80 ADKIEPMLR-RAREHPTY---------TACPSTLACPLNPNSHPLQGQQELLQDFSERFS 129
+ +L + HP + TA + +A ++ + + +
Sbjct: 222 QGQARIILAGKTSSHPLFVIHDMETLCTAEKTLMAKVVSDGIRDKEAEVRIFHCCQCVSV 281
Query: 130 PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV 189
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++ +
Sbjct: 282 ETVTNLTEFAKAIPGFASLDLNDQVTLLKYGVYEAIFTMLSSTMN-KDGMLVAYGHGFIT 340
Query: 190 RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
R+ + + F +M+ F+FA + N L L D++I LF + ++ R GL N + +E+M
Sbjct: 341 REFLKNLRKPFCDMMEPKFNFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIDHIEKM 400
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQ 307
+ + ++L L NHP+ L +L+ L DLR L H++ LV TE L
Sbjct: 401 QEAIVHVLKLHLQSNHPDDTFLFPKLLQKLADLRQLVTEHAQ-LVQVIKTESDAALHPLL 459
Query: 308 QQWH 311
Q+ +
Sbjct: 460 QEIY 463
>gi|115728480|ref|XP_001193835.1| PREDICTED: uncharacterized protein LOC756187 [Strongylocentrotus
purpuratus]
Length = 742
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 23/250 (9%)
Query: 49 CTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLN 108
CTE + A+ + +L ++ HL + E L A T+ ST C L
Sbjct: 511 CTE--IDAQFSSLEEILRVAIKKHL--------RSEQHLHAADGKETHG---STGLCGL- 556
Query: 109 PNSHPLQ---GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
PL+ G +E F +RF+P I +V FAK GF + H+DQ+TLLKAG FEVL
Sbjct: 557 ----PLELSVGDKE--DAFCDRFAPIISRIVSFAKATEGFEDIPHEDQLTLLKAGCFEVL 610
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLF 225
L++L+ + D +++ ++ NGE R + S+ L+ ++ A +LN L+LS E L
Sbjct: 611 LLQLSQILDPESDFIVFTNGEKFHRGLLQKSDVGDLVLALSKIASQLNQLNLSLPERALL 670
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++++ R G+++ + V ++ L +L L H + + + ++ DLR LN
Sbjct: 671 QASILVASDRKGIQSVDEVRSLQTHLLGVLEKFLYATHAPDALVFHKCLQVVLDLRVLNL 730
Query: 286 LHSEKLVAFQ 295
+SEKL+A Q
Sbjct: 731 KYSEKLLAHQ 740
>gi|354474027|ref|XP_003499233.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Cricetulus
griseus]
Length = 455
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|17367843|sp|Q9W6B3.1|RARB_COTJA RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|4566559|gb|AAD23397.1|AF110729_1 retinoic acid receptor beta-1 [Coturnix coturnix]
Length = 455
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|8132818|gb|AAF73404.1|AF228696_1 peroxisome proliferator activated receptor alpha [Sus scrofa]
Length = 468
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 17/303 (5%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + + E A A+L + + ++ + +
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTCEHD--LEDAETADLKSLAKRIYEAIKKNFNMNKVK 224
Query: 80 ADKIEPMLRRAREHPTY------TACPS--TLACPLNPN-SHPLQGQQELLQDFSERFSP 130
A I + +A +P + T C + TL L N + + + +
Sbjct: 225 ARVI--LAGKASNNPAFCIRDMETLCMAEKTLVAKLVANGTQNKEAEVRIFHCCQCTSDV 282
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
++ ++ EFAK I GF+ L +DQVTLLK GV++ + L+ + + + ++ + R
Sbjct: 283 SVTELTEFAKSIXGFASLDLNDQVTLLKYGVYDAIFAMLSSVMN-KDGMLVAYGNGFITR 341
Query: 191 DSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248
+ + S F +M+ FDFA + N L L D+++ LF + ++ R GL N +ERM+
Sbjct: 342 EFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDLSLFVAAIICCGDRPGLLNVGHIERMQ 401
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQ 308
+ ++L L NHP+ + L +L+ L DLR L H++ + + TE L Q
Sbjct: 402 EGIVHVLKLHLQTNHPDDVFLFPKLLQKLADLRQLVTEHAQLVQVIKKTEADAALHPLLQ 461
Query: 309 QWH 311
+ +
Sbjct: 462 EIY 464
>gi|216409684|dbj|BAH02279.1| retinoic acid receptor beta [Homo sapiens]
Length = 448
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE S I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELASKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|90823203|gb|ABE01103.1| peroxisome proliferator-activated receptor gamma 2 [Sus scrofa]
Length = 504
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 256
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ + + Q R
Sbjct: 257 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEHSKEVAIRIFQGCQFRS 316
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 317 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 375
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 376 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 435
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 436 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 495
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 496 LQEIYKD 502
>gi|121503189|gb|ABM55147.1| RORC [Macaca mulatta]
Length = 442
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 236 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNIFSREEV 282
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 283 IGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM 342
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L++++V
Sbjct: 343 -CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALV 401
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQM 267
+I+ +R GL+ K VE+++ LE H L + H + +
Sbjct: 402 LINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSI 439
>gi|151413585|gb|ABS11250.1| thyroid hormone receptor [Branchiostoma lanceolatum]
Length = 426
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q++ +E +P I VVEFAK+IPGF+ L DDQV LLK FEV+ +R A FD Q
Sbjct: 224 QDIFGHLAEVITPAIIKVVEFAKQIPGFTKLVPDDQVALLKNCCFEVMCLRAASRFDKQR 283
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ G + ++ + L + +F+FAE L+ LHL DTE+ L + +++ R G
Sbjct: 284 RTITMFGGLTVTKEQVSLGGLGRLAEPLFEFAEGLSQLHLDDTEVAL-LAALLVVADRPG 342
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE--KLVAFQ 295
++++E ++R++ + + + + P Q L +++ + DLR L+ H+E KLV +
Sbjct: 343 VQDQESIDRLQDIILTAYKNYITRQRPHQPVLWGKILMKVTDLRALSVAHAEQVKLVKME 402
Query: 296 MT 297
T
Sbjct: 403 CT 404
>gi|6981382|ref|NP_037328.1| peroxisome proliferator-activated receptor alpha [Rattus
norvegicus]
gi|585718|sp|P37230.1|PPARA_RAT RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|206318|gb|AAA41918.1| peroxisome proliferator activated receptor [Rattus norvegicus]
gi|149065700|gb|EDM15573.1| peroxisome proliferator activated receptor alpha [Rattus
norvegicus]
Length = 468
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLAKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVENKEAEVRFFHCCQCM 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHP 458
Query: 306 QQQQWH 311
Q+ +
Sbjct: 459 LLQEIY 464
>gi|63786|emb|CAA39997.1| retinoic acid binding protein beta isoform [Gallus gallus]
Length = 455
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|61741151|gb|AAX54531.1| retinoic acid receptor [Petromyzon marinus]
Length = 308
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 101/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF L DQ+TLLKA ++L++R+
Sbjct: 91 HRVQLDLGLWDKFSELSTKCIVKIVEFAKRMPGFPSLTIADQITLLKAACLDILILRICS 150
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 151 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFASQLLPLEMDDTEAGLLSAICLI 210
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L + VER++ L L + + P + ++ +++ + DLR ++ SE++
Sbjct: 211 CGDRQDLEEPQKVERLQEPLLEALKLYVRRRRPSKPHMFPKILMKITDLRGISAKGSERV 270
Query: 292 VAFQM 296
+ +M
Sbjct: 271 ITLKM 275
>gi|301614423|ref|XP_002936681.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 442
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 205 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 264
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA++L L + DTE GL S+I +I
Sbjct: 265 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFADQLLPLEMDDTETGLLSAICLI 324
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E VE+++ L L + P++ + ++ + DLR ++ +E+
Sbjct: 325 CGDRMDLEEPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERA 384
Query: 292 VAFQM 296
+ +M
Sbjct: 385 ITLKM 389
>gi|383855824|ref|XP_003703410.1| PREDICTED: ecdysone-induced protein 78C-like [Megachile rotundata]
Length = 462
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 19/242 (7%)
Query: 68 VVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP-----NSHPLQGQQ-ELL 121
V +AH C FT + ++R+ P T+ S A P +P + ++ Q+ L
Sbjct: 200 VSQAHHAHCGFTEESTRGIVRKPMIIPASTS--SQPASPEDPEAASSTAETVESQRIWLW 257
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q F+ R +P+++ VVEFAKR+PGF L DDQ+ L+K G FEV L ++ M + +SM
Sbjct: 258 QQFATRVTPSVQRVVEFAKRVPGFCDLSQDDQLILIKVGFFEVWLSHISKM--TTDSSMT 315
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G + R + + ++ F LN LSDTE+GLFS V++ R GL +
Sbjct: 316 FEDGTCITRQQMELMYEPDFVSALMQFTSALNAHQLSDTELGLFSGAVLLG-ERPGLNDV 374
Query: 242 ELVERMRGKLENMLMHVLNQNH-----PEQMNLCAELISM---LPDLRTLNQLHSEKLVA 293
+ V+R++ +L L +NH C+ + S+ +P+LR L H+ L
Sbjct: 375 KAVQRLQDRLLEALKVQALRNHTVSGEATSAGGCSGVSSVSQRIPELRALGARHANLLDW 434
Query: 294 FQ 295
F+
Sbjct: 435 FR 436
>gi|147900408|ref|NP_001091099.1| peroxisome proliferators-activated receptor alpha1 [Takifugu
rubripes]
gi|138996278|dbj|BAF52667.1| peroxisome proliferators-activated receptor alpha1 [Takifugu
rubripes]
Length = 469
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 22/293 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A M T + + A D++ + + A+L
Sbjct: 169 HNA-IRFGRMPQSEKLKLKAEM--VTGDREVDDPRVA---DQKTLARQIYEAYLKNFNMN 222
Query: 80 ADKIEPMLRRA--------REHPTYTACPSTLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L R+ T T + + L+ ++ ++ F
Sbjct: 223 KAKARSILSGKTSTPPFVIRDMETLQLAEQTRVAKMVSSEGTLKDREVEVRIFHCCQYTS 282
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGEV 187
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA CM ++ ++ +
Sbjct: 283 VETVTELTEFAKSVPGFSRLDLNDQVTLLKYGVYEALFAMLASCM--NKDGLLVAYSSGF 340
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ F FA + NGL L D+++ LF + ++ R GL N +E
Sbjct: 341 ITREFLKSLRRPFSDMMEPKFQFAMKFNGLGLDDSDLALFVAAIICCGDRPGLVNVAHIE 400
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
RM+ + +L L NHP+ L L+ L DLR L H++ + + TE
Sbjct: 401 RMQESIVRVLQLHLLANHPDDTFLFPRLLQKLADLRQLVTEHAQVVQEIKKTE 453
>gi|355559441|gb|EHH16169.1| hypothetical protein EGK_11413 [Macaca mulatta]
Length = 505
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 20/303 (6%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
+RFGR+P+ EK ++LA + + E A D + + + +++ + T K
Sbjct: 208 IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLTKAKA 261
Query: 84 EPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERFSPTI 132
+L + + P ++L + PLQ Q + + Q R +
Sbjct: 262 RAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAV 321
Query: 133 RDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDS 192
+++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I + R+
Sbjct: 322 QEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFMTREF 380
Query: 193 IHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
+ S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E ++
Sbjct: 381 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 440
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQW 310
L L L NHPE L A+L+ + DLR + H + L + TE L Q+
Sbjct: 441 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEI 500
Query: 311 HGE 313
+ +
Sbjct: 501 YKD 503
>gi|45384512|ref|NP_990657.1| retinoic acid receptor beta [Gallus gallus]
gi|3041719|sp|P22448.2|RARB_CHICK RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|871040|emb|CAA40617.1| retinoic acid receptor beta,isoform 1 [Gallus gallus]
Length = 455
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|427795199|gb|JAA63051.1| Putative ecdysone receptor a2 daphnia magna ecdysone receptor a2,
partial [Rhipicephalus pulchellus]
Length = 511
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 317 QRRFQHITEITILTVQLIVEFSKRVPGFDTLAREDQITLLKACSSEVMMLRGARKYDVKT 376
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 377 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPA 435
Query: 238 LRNKELVERMR-GKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + VER++ +E + M+ ++NH P N A L+S+L +LRTL +++E + F
Sbjct: 436 LVDPCKVERIQEYYIETLRMY--SENHRPPGKNYFARLLSILTELRTLGNMNAE--MCFS 491
Query: 296 MTEQQQQL 303
+ Q ++L
Sbjct: 492 LKVQNKKL 499
>gi|334349098|ref|XP_003342148.1| PREDICTED: retinoic acid receptor beta isoform 2 [Monodelphis
domestica]
Length = 455
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|2738906|gb|AAB94567.1| AamEcRA2 [Amblyomma americanum]
Length = 570
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 376 QRRFQHITEITILTVQLIVEFSKRVPGFDTLAREDQITLLKACSSEVMMLRGARKYDVKT 435
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 436 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPS 494
Query: 238 LRNKELVERMR-GKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + VER++ +E + M+ ++NH P N A L+S+L +LRTL +++E + F
Sbjct: 495 LVDPHKVERIQEYYIETLRMY--SENHRPPGKNYFARLLSILTELRTLGNMNAE--MCFS 550
Query: 296 MTEQQQQL 303
+ Q ++L
Sbjct: 551 LKVQNKKL 558
>gi|344288071|ref|XP_003415774.1| PREDICTED: retinoic acid receptor beta isoform 1 [Loxodonta
africana]
Length = 448
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 23/250 (9%)
Query: 48 KCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACP 106
+CTE + AELDD + T+ +AH +T P L + ++ T ++
Sbjct: 166 ECTESYEMTAELDD---LTETIRKAHQET--------FPSLCQLGKYTTNSS-------- 206
Query: 107 LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L+
Sbjct: 207 ---ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILI 263
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
+R+ + + ++M +G L R +H++ L D +F FA +L L + DTE GL S
Sbjct: 264 LRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLS 323
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQL 286
+I +I R L V++++ L L + + P + ++ +++ + DLR+++
Sbjct: 324 AICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAK 383
Query: 287 HSEKLVAFQM 296
+E+++ +M
Sbjct: 384 GAERVITLKM 393
>gi|372199357|gb|AEX88626.1| peroxisome proliferator-activated receptor gamma 2 [Capra hircus]
Length = 505
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|291238706|ref|XP_002739270.1| PREDICTED: nuclear receptor nhr-7A-like [Saccoglossus kowalevskii]
Length = 446
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 30/302 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAE-------------LDDE-QRMLSTVV 69
VR GR+P ++K A + ++ + K AA+ +D E + +++ V
Sbjct: 109 VRIGRIPNKQKETDYADFPLVSISEASIKESAADSSEHPIDSPPSPVVDPEIEVIIADVA 168
Query: 70 RAHLDTCAFTADKIEPMLRRAREHPTYTACPST---------------LACPLNPNSHPL 114
+AH DT E + ++H + P T A P P S
Sbjct: 169 KAHRDTAKAYCRNGEWESLKYKKHYLTDSIPDTTVQSPRVGKFEKPEMFASPHQPPSMNE 228
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
+ + +L + S I+ ++ F K++PGF L H DQ+ L+KAG+FE+L ++ C+
Sbjct: 229 EDKVKLWSLVGDNLSQYIKRLITFCKKVPGFIHLDHQDQLVLVKAGLFEILTIQ-DCVEL 287
Query: 175 SQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
N+ G + R+ + S L++ +F FA L+ L+ +E L S+IV+ S
Sbjct: 288 VLYNAFTLNTGHKIPRNMMLSIMPEELVEGLFKFARELHSFDLTTSEAALLSAIVLCSDD 347
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAF 294
R GL + V ++ KL L +NH + A+L+ LP+LR+LN+LH++ +V
Sbjct: 348 RPGLEDPRSVSMIQSKLLTALKVETLRNHSSSSHTFAKLLLRLPELRSLNELHNQHVVKM 407
Query: 295 QM 296
++
Sbjct: 408 KI 409
>gi|7110506|gb|AAF36970.1|AF230281_1 nuclear receptor 3 [Aedes aegypti]
Length = 468
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 107/185 (57%), Gaps = 8/185 (4%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q+EL D +E+ + I+ ++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 260 QEELWLDCAEKLTAMIQQIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLMDLS 319
Query: 177 TNSMICLNGEVLVRDSIHSSNARF---LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
TNS+ L G++++ + ++ F L+ +F+ A+ + L L++TE+ L+ S+V++ P
Sbjct: 320 TNSV--LYGDIMLPQEVFYTSDSFEMKLVACIFETAKSIAELKLTETELALYQSLVLLWP 377
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R+G+R ++R+ + + + NH + + L++ +P R L+ +H E
Sbjct: 378 ERNGVRGNTEIQRLFEMSMSAIRQEIEANHAPLKGDVTVLEILLNKIPTFRELSIMHMEA 437
Query: 291 LVAFQ 295
L F+
Sbjct: 438 LQKFK 442
>gi|31543500|ref|NP_035274.2| peroxisome proliferator-activated receptor alpha [Mus musculus]
gi|164663880|ref|NP_001106889.1| peroxisome proliferator-activated receptor alpha [Mus musculus]
gi|1709728|sp|P23204.2|PPARA_MOUSE RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|817991|emb|CAA53042.1| peroxisome proliferator activated receptor alpha [Mus musculus]
gi|16877262|gb|AAH16892.1| Peroxisome proliferator activated receptor alpha [Mus musculus]
gi|26330838|dbj|BAC29149.1| unnamed protein product [Mus musculus]
gi|26349327|dbj|BAC38303.1| unnamed protein product [Mus musculus]
gi|74146228|dbj|BAE28893.1| unnamed protein product [Mus musculus]
gi|148672480|gb|EDL04427.1| peroxisome proliferator activated receptor alpha, isoform CRA_a
[Mus musculus]
Length = 468
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLGKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCM 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHP 458
Query: 306 QQQQWH 311
Q+ +
Sbjct: 459 LLQEIY 464
>gi|53765|emb|CAA40856.1| peroxisome proliferator activated receptor [Mus musculus]
gi|227253|prf||1617164A steroid hormone receptor
Length = 468
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLGKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCM 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHP 458
Query: 306 QQQQWH 311
Q+ +
Sbjct: 459 LLQEIY 464
>gi|157123672|ref|XP_001660273.1| expressed protein (HR3) [Aedes aegypti]
gi|108874313|gb|EAT38538.1| AAEL009588-PA [Aedes aegypti]
Length = 468
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 107/185 (57%), Gaps = 8/185 (4%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q+EL D +E+ + I+ ++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 260 QEELWLDCAEKLTAMIQQIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLMDLS 319
Query: 177 TNSMICLNGEVLVRDSIHSSNARF---LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
TNS+ L G++++ + ++ F L+ +F+ A+ + L L++TE+ L+ S+V++ P
Sbjct: 320 TNSV--LYGDIMLPQEVFYTSDSFEMKLVACIFETAKSIAELKLTETELALYQSLVLLWP 377
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R+G+R ++R+ + + + NH + + L++ +P R L+ +H E
Sbjct: 378 ERNGVRGNTEIQRLFEMSMSAIRQEIEANHAPLKGDVTVLEILLNKIPTFRELSIMHMEA 437
Query: 291 LVAFQ 295
L F+
Sbjct: 438 LQKFK 442
>gi|2738902|gb|AAB94565.1| AamEcRA3 [Amblyomma americanum]
Length = 444
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 250 QRRFQHITEITILTVQLIVEFSKRVPGFDTLAREDQITLLKACSSEVMMLRGARKYDVKT 309
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 310 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPS 368
Query: 238 LRNKELVERMR-GKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + VER++ +E + M+ ++NH P N A L+S+L +LRTL +++E + F
Sbjct: 369 LVDPHKVERIQEYYIETLRMY--SENHRPPGKNYFARLLSILTELRTLGNMNAE--MCFS 424
Query: 296 MTEQQQQL 303
+ Q ++L
Sbjct: 425 LKVQNKKL 432
>gi|30794338|ref|NP_851367.1| peroxisome proliferator-activated receptor gamma [Bos taurus]
gi|13431789|sp|O18971.1|PPARG_BOVIN RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|2653406|emb|CAA73033.1| peroxisome proliferator activated receptor gamma 2 [Bos taurus]
gi|296474654|tpg|DAA16769.1| TPA: peroxisome proliferator-activated receptor gamma [Bos taurus]
gi|440900005|gb|ELR51236.1| Peroxisome proliferator-activated receptor gamma [Bos grunniens
mutus]
Length = 505
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|209168776|gb|ACI42381.1| peroxisome proliferator-activated receptor alpha [Lateolabrax
japonicus]
Length = 469
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 20/292 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A M T + E +L D++ + + A+L
Sbjct: 169 HNA-IRFGRMPQSEKLKLKAEM--VTGDREVEDP---QLADQKTLARQIYEAYLKNFNMN 222
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L P T TL + ++ L+ ++ ++ F
Sbjct: 223 KAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGSATALKDREAEVRIFHCCQCTS 282
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA + + ++ +
Sbjct: 283 VETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVYEALFAMLASSMN-KDGLLVAYGSGFI 341
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N +ER
Sbjct: 342 TREFLKSLRQPFSEMMEPKFQFAMKFNALELDDSDLALFVAAIICCGDRPGLVNVAHIER 401
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
M+ + +L L NHP+ L L+ L DLR L H++ + + TE
Sbjct: 402 MQDSIVQVLQLHLLSNHPDDAFLFPRLLQKLADLRQLVTEHAQLVQEIKKTE 453
>gi|346716100|ref|NP_001231210.1| peroxisome proliferator-activated receptor gamma [Cricetulus
griseus]
gi|13431791|sp|P57797.1|PPARG_CRIGR RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|461359|emb|CAA83219.1| peroxisome proliferator activated receptor gamma [Cricetulus
griseus]
Length = 475
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|210060989|pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060995|pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061001|pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 29/301 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 119 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 167
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 168 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 227
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 228 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 286
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 287 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 346
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 347 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 406
Query: 303 L 303
L
Sbjct: 407 L 407
>gi|283488472|gb|ADB24759.1| ecdysone receptor [Agelena silvatica]
Length = 533
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 3/175 (1%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T+S++ N + R
Sbjct: 352 TVQLIVEFSKRVPGFDTLSREDQITLLKACSSEVMMLRTARKYDIKTDSIVFANNQPYTR 411
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
++ S+ DS+F F + L + + E L ++IV+ S R L + VE+++
Sbjct: 412 ENYRSACMGDSADSIFHFCRNMCVLKVDNAEYALLTAIVIFS-ERPALLEPKKVEKIQEF 470
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
L ++ N P N A L+S L +LRTL ++SE + F + Q ++L A
Sbjct: 471 YIETLRAYISTNRPPGKNYFARLLSTLVELRTLGNMNSE--LCFSLKVQNKKLPA 523
>gi|389610515|dbj|BAM18869.1| hormone receptor 3 [Papilio xuthus]
Length = 554
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 345 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLID--V 402
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
N L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 403 NREQVLYGDVVLPIRECVHARDPRDMALVVGIFDAAKTIARLKLTETELALYQSLVLLWP 462
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R ++ + + H + NH + + L++ +P R L+ +H E
Sbjct: 463 ERHGVRGNPEIQCLFNMSMAAMRHEIETNHAPLKGDVTVLDTLLTKIPTFRELSLMHLEA 522
Query: 291 LVAFQMTEQQQQLAA 305
L F+ Q A
Sbjct: 523 LCRFKAAHPQHMFPA 537
>gi|262213550|gb|ACY36002.1| peroxisome proliferator-activated receptor gamma [Bos grunniens]
Length = 475
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKVKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|187960105|ref|NP_001120802.1| peroxisome proliferator-activated receptor gamma isoform 1 [Mus
musculus]
gi|514307|gb|AAA19971.1| peroxisome proliferator-activated receptor gamma [Mus musculus]
Length = 475
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|76880161|dbj|BAE45855.1| nuclear receptor [Ornithodoros moubata]
Length = 567
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 109/188 (57%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 373 QRRFQHITEITILTVQLIVEFSKRVPGFDTLLREDQITLLKACSSEVMMLRGARKYDVKT 432
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 433 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPC 491
Query: 238 LRNKELVERMR-GKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + VER++ +E + M+ ++NH P N A L+S L +LRTL +++E + F
Sbjct: 492 LVDPHKVERIQEYYIETLRMY--SENHRPPGKNYFARLLSTLTELRTLGNMNAE--MCFS 547
Query: 296 MTEQQQQL 303
+ Q ++L
Sbjct: 548 LKVQNKKL 555
>gi|380800389|gb|AFE72070.1| retinoic acid receptor beta isoform 1, partial [Macaca mulatta]
Length = 433
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 145 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 191
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 192 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 242
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 243 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 302
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 303 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 362
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 363 RSISAKGAERVITLKM 378
>gi|90823201|gb|ABE01102.1| peroxisome proliferator-activated receptor gamma 1 [Sus scrofa]
Length = 475
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEHSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|6448520|emb|CAB61238.1| peroxisome proliferator activated receptor gamma [Crocodylus
niloticus]
Length = 393
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 144/298 (48%), Gaps = 23/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + + E +ALA L D + T +A
Sbjct: 101 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 159
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C + PLQ Q + + Q R
Sbjct: 160 ILTGKTTDK-SPFV--IYDMNSLMMGEDQIKCK---HVSPLQEQNKEVAIRIFQRCQFRS 213
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
+++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 214 VEAVQEXTEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 271
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 272 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 331
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 332 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSL 389
>gi|351706161|gb|EHB09080.1| Retinoic acid receptor gamma [Heterocephalus glaber]
Length = 451
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 214 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 273
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 274 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 333
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 334 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 393
Query: 292 VAFQM 296
+ +M
Sbjct: 394 ITLKM 398
>gi|7706625|ref|NP_057236.1| retinoic acid receptor beta isoform 2 [Homo sapiens]
gi|332816290|ref|XP_003309720.1| PREDICTED: retinoic acid receptor beta [Pan troglodytes]
gi|332816292|ref|XP_001164266.2| PREDICTED: retinoic acid receptor beta isoform 1 [Pan troglodytes]
gi|426339744|ref|XP_004033802.1| PREDICTED: retinoic acid receptor beta isoform 2 [Gorilla gorilla
gorilla]
gi|426339746|ref|XP_004033803.1| PREDICTED: retinoic acid receptor beta isoform 3 [Gorilla gorilla
gorilla]
gi|5616237|gb|AAD45688.1|AF157483_1 retinoic acid receptor beta 4 [Homo sapiens]
gi|46253560|gb|AAS85757.1| retinoic acid receptor beta 5 [Homo sapiens]
gi|60819548|gb|AAX36504.1| retinoic acid receptor beta [synthetic construct]
gi|119584759|gb|EAW64355.1| retinoic acid receptor, beta, isoform CRA_b [Homo sapiens]
gi|325495537|gb|ADZ17374.1| retinoic acid receptor beta variant 2 [Homo sapiens]
gi|387539282|gb|AFJ70268.1| retinoic acid receptor beta isoform 2 [Macaca mulatta]
Length = 336
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 48 KETSKQECTESYEMTAELDD---LTEKIRKAHQETF--------PSLCQLGKYTTNSSA- 95
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 96 ----------DHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 145
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 146 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 205
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 206 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 265
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 266 RSISAKGAERVITLKM 281
>gi|223941854|ref|NP_001138838.1| peroxisome proliferator-activated receptor gamma isoform 2 [Rattus
norvegicus]
gi|223941857|ref|NP_001138839.1| peroxisome proliferator-activated receptor gamma isoform 2 [Rattus
norvegicus]
gi|5107413|gb|AAD40118.1|AF156665_1 peroxisome proliferator-activated receptor gamma 1 [Rattus
norvegicus]
gi|7533192|gb|AAF63385.1|AF246457_1 peroxisome proliferator-activated receptor [Rattus norvegicus]
gi|7533194|gb|AAF63386.1|AF246458_1 peroxisome proliferator-activated receptor [Rattus norvegicus]
gi|3492843|dbj|BAA32540.1| PPAR-gamma protein [Rattus norvegicus]
gi|149049701|gb|EDM02155.1| peroxisome proliferator activated receptor gamma, isoform CRA_b
[Rattus norvegicus]
gi|149049702|gb|EDM02156.1| peroxisome proliferator activated receptor gamma, isoform CRA_b
[Rattus norvegicus]
Length = 475
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|410911496|ref|XP_003969226.1| PREDICTED: retinoic acid receptor beta-like [Takifugu rubripes]
Length = 345
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + ++
Sbjct: 82 LWDKFSELATKCIIKIVEFAKRVPGFTALTIADQITLLKAACLDILILRICTRYTPDQDT 141
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L + + DTE GL S+I +IS R L
Sbjct: 142 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPIEMDDTETGLLSAICLISGDRQDLE 201
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ + + + DLR+++ +E++++ +M
Sbjct: 202 EPSKVDQLQEPLLEALKIYVRKRRPSKPHMFPKTLMKITDLRSISAKGAERVISLKM 258
>gi|2078499|gb|AAB54059.1| hormone receptor 3C [Choristoneura fumiferana]
Length = 651
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
D +++ + I+ ++EFAK +PGF L DDQ+ LLK+G FE+ +VRL+ + D N
Sbjct: 448 DCADKLTTMIQSIIEFAKLMPGFMKLTQDDQILLLKSGSFELAIVRLSRLID--VNRETV 505
Query: 183 LNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
L G+V+ +RD +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P R G+
Sbjct: 506 LYGDVVLPIRDCVHARDPRDMALIVGIFDAAKTIARLKLTETELALYQSLVLLWPERHGV 565
Query: 239 RNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
R ++ + + H + NH + + L++ LP R L+ +H E L F+
Sbjct: 566 RGNHEIQCLFNMSMTAMRHEIETNHAPIKGDVTVLDTLLAKLPTFRELSLMHLEALCRFK 625
>gi|130493601|ref|NP_001076288.1| RAR-related orphan receptor C a [Danio rerio]
gi|126508457|gb|ABO15414.1| retinoid-related orphan receptor c [Danio rerio]
Length = 479
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 131/237 (55%), Gaps = 19/237 (8%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ V+++H++T ++ ++++ + TL P + + + L
Sbjct: 231 ERITQNVIKSHIETSQYSTEELKRL-------------AWTLYTPEEIRVYQNKPTEMLW 277
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + + I+ VVEFAKRI GF L +DQ+ LLKAG +VLL+R+ ++ N+++
Sbjct: 278 QQCAVQLTNAIQYVVEFAKRISGFMDLSQNDQIILLKAGCLDVLLIRMCRAYNPINNTLL 337
Query: 182 CLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK 241
+G+ + L+ ++F+ A+ L+ L LS E+ LF++ V++SP R L +
Sbjct: 338 -FDGKFASPQLFKALGCDDLVSAVFEMAKTLSRLQLSGEEMALFTATVLLSPDRPWLTDA 396
Query: 242 ELVERMRGKLENMLMHVLNQN--HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ K+ L H L+++ H E++ A ++S LP ++++ LH +KL F++
Sbjct: 397 QKVQKLQEKVYVALQHYLHKSGVHEEKL---ARMVSKLPMMKSICNLHIDKLEFFRL 450
>gi|218156226|dbj|BAH03345.1| retinoic acid receptor 1 [Eptatretus burgeri]
Length = 380
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF L DQ+TLLKA ++L++R+
Sbjct: 128 HRVQLDLNLWDKFSELSTKCIVKIVEFAKRLPGFPSLTIADQITLLKAACLDILILRICL 187
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL +I +I
Sbjct: 188 RYTPEHDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLAMDDTEAGLLCAICLI 247
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
+ R L E VE+++ L L + P++ ++ +++ + DLR ++ SE++
Sbjct: 248 TGDRQDLEEPEKVEQLQEPLLEALKVYARRRRPDKPHMFPKILMKITDLRGISAKGSERV 307
Query: 292 VAFQM 296
+ +M
Sbjct: 308 ITLKM 312
>gi|60830916|gb|AAX36950.1| retinoic acid receptor beta [synthetic construct]
Length = 337
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 48 KETSKQECTESYEMTAELDD---LTEKIRKAHQETF--------PSLCQLGKYTTNSSA- 95
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 96 ----------DHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 145
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 146 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 205
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 206 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 265
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 266 RSISAKGAERVITLKM 281
>gi|218156250|dbj|BAH03357.1| retinoic acid receptor beta [Scyliorhinus torazame]
Length = 375
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 101/177 (57%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 133 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 192
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 193 MTFSDGLTLNRIQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 252
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ E V++++ L L + + P + ++ +++ + DLR+++ +E+++ ++
Sbjct: 253 DAEKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKL 309
>gi|403289928|ref|XP_003936090.1| PREDICTED: retinoic acid receptor beta [Saimiri boliviensis
boliviensis]
Length = 448
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|2653404|emb|CAA73032.1| peroxisome proliferator activated receptor gamma 1 [Bos taurus]
gi|94534932|gb|AAI16099.1| PPARG protein [Bos taurus]
Length = 475
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|155369642|ref|NP_001094391.1| peroxisome proliferator-activated receptor gamma [Ovis aries]
gi|23306673|gb|AAN15206.1| peroxisome proliferator activated receptor gamma 1 protein [Ovis
aries]
gi|262385089|gb|ACY64542.1| peroxisome proliferator-activated receptor gamma [Capra hircus]
gi|314912407|gb|ADT63789.1| peroxisome proliferator-activated receptor gamma [Capra hircus]
Length = 475
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|373938668|gb|AEY79497.1| peroxisome proliferator activated receptor gamma 1a [Bubalus
bubalis]
Length = 475
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVAEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|311115255|gb|ADP69098.1| BCL6 corepressor/retinoic acid receptor alpha fusion protein [Homo
sapiens]
Length = 1931
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 1692 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 1751
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 1752 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 1811
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 1812 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 1869
>gi|13432235|sp|P37238.3|PPARG_MOUSE RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|500640|gb|AAA62277.1| peroxisome proliferator activated protein-gamma-2 [Mus musculus]
Length = 505
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 147/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + + F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKNLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|73989947|ref|XP_862443.1| PREDICTED: retinoic acid receptor beta isoform 9 [Canis lupus
familiaris]
gi|410971535|ref|XP_003992223.1| PREDICTED: retinoic acid receptor beta isoform 2 [Felis catus]
Length = 336
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 224
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 225 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
>gi|225858|prf||1401244A thyroid/steroid receptor related gene
Length = 448
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|395855954|ref|XP_003800408.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Otolemur
garnettii]
Length = 502
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 45/254 (17%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T A A L + + ++ V +++ +TC ++E +LR+ +RE T
Sbjct: 255 TPGAPYASLMEIEHLVQNVCKSYRETCQL---RLEDLLRQRSNVFSREEVT--------- 302
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 303 ------GYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 356
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ +++ + ++ L+ S+FDF+ L+ L S+ EI L
Sbjct: 357 VLVRMCRAYNADNH-------------TVFFEGCSELISSIFDFSHSLSALRFSEDEIAL 403
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ +R GL+ VE+++ LE H L + H + L++ LP LR
Sbjct: 404 YTALVLINANRPGLQETRKVEQLQYNLELAFQHHLCKTHRQ------SLLAKLPPKGTLR 457
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 458 SLCSQHMEELHVFQ 471
>gi|301782151|ref|XP_002926490.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Ailuropoda
melanoleuca]
Length = 448
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|34783617|gb|AAH50415.2| RARB protein [Homo sapiens]
Length = 346
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 58 KETSKQECTESYEMTAELDD---LTEKIRKAHQETF--------PSLCQLGKYTTNSSA- 105
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 106 ----------DHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 155
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 156 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 215
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 216 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 275
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 276 RSISAKGTERVITLKM 291
>gi|14916494|ref|NP_000956.2| retinoic acid receptor beta isoform 1 [Homo sapiens]
gi|114585741|ref|XP_001164404.1| PREDICTED: retinoic acid receptor beta isoform 4 [Pan troglodytes]
gi|395734071|ref|XP_002814046.2| PREDICTED: retinoic acid receptor beta isoform 1 [Pongo abelii]
gi|397511696|ref|XP_003826204.1| PREDICTED: retinoic acid receptor beta [Pan paniscus]
gi|402861717|ref|XP_003895230.1| PREDICTED: retinoic acid receptor beta [Papio anubis]
gi|426339742|ref|XP_004033801.1| PREDICTED: retinoic acid receptor beta isoform 1 [Gorilla gorilla
gorilla]
gi|38173846|gb|AAH60794.1| Retinoic acid receptor, beta [Homo sapiens]
gi|119584758|gb|EAW64354.1| retinoic acid receptor, beta, isoform CRA_a [Homo sapiens]
gi|307685775|dbj|BAJ20818.1| retinoic acid receptor, beta [synthetic construct]
gi|325495539|gb|ADZ17375.1| retinoic acid receptor beta variant 1 [Homo sapiens]
gi|410220772|gb|JAA07605.1| retinoic acid receptor, beta [Pan troglodytes]
Length = 448
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|226050|prf||1408258A retinoic acid receptor
Length = 448
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|49168600|emb|CAG38795.1| RARB [Homo sapiens]
Length = 336
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 48 KETSKQECTESYEMTAELDD---LTEKIRKAHQETF--------PSLCQLGKYTTNSSA- 95
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 96 ----------DHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 145
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 146 CLDILILRIYTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 205
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 206 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 265
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 266 RSISAKGAERVITLKM 281
>gi|432883778|ref|XP_004074348.1| PREDICTED: retinoic acid receptor beta [Oryzias latipes]
Length = 460
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + ++
Sbjct: 211 LWDKFSELATKCIIKIVEFAKRVPGFTALTIADQITLLKAACLDILILRICTRYTPDQDT 270
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L + + DTE GL S+I +IS R L
Sbjct: 271 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPMEMDDTETGLLSAICLISGDRQDLE 330
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ + + + DLR+++ +E++++ +M
Sbjct: 331 EPSKVDQLQEPLLEALKIYVRKRRPSKPHMFPKTLMKITDLRSISAKGAERVISLKM 387
>gi|318081977|gb|ADH95693.2| peroxisome proliferator activated receptor alpha [Megalobrama
amblycephala]
Length = 467
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 138/293 (47%), Gaps = 22/293 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK R+ A + T + E +L D++ + + A++
Sbjct: 167 HNA-IRFGRMPQSEKLRLKAEIL--TGERDVEDP---QLADQKTLAKQIYEAYMKNFNMN 220
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L P T TL L +S L + ++ F
Sbjct: 221 KCKARAILTGKTSTPPFVIHDMETLQLAEQTLVAKLVGSSGGLLNKDAEVRIFHCCQCTS 280
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGEV 187
T+ ++ EFAK +PGFS L +DQVTLLK GV E L LA CM ++ ++
Sbjct: 281 VETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCM--NKDGLLVAYGSGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRRPFSEMMEPKFQFAMKFNSLELDDSDLALFVAAIICCGDRPGLVNVPHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
RM+ + N+L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 399 RMQENIVNVLHLHLKSNHPDHGFLFPKLLQKLVDLRQLVTEHAQLVQEIKKTE 451
>gi|157679168|dbj|BAF80459.1| peroxisome proliferator-activated receptor gamma [Pagrus major]
Length = 522
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 144/310 (46%), Gaps = 33/310 (10%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTN--------------------------TKCTEKA 53
HNA +RFGR+P+ EK ++LA TK +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARA 256
Query: 54 -LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH 112
L+ + D + +++ ++ F K P ++ T + + H
Sbjct: 257 ILSGKTGDNAPFVIHDMKSLMEGEQFINCKQIPNQEHQQQTSALTIGHGGVTGAYLGSDH 316
Query: 113 PLQGQQEL--LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
EL Q R + +R+V EFAK IPGF L +DQVTLLK GV E+L++ +A
Sbjct: 317 SGMDAVELRFFQSCQSRSAEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEILIIMMA 376
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ + + ++I + R+ + S F +M+ F+FA + N L L D+++ LF ++
Sbjct: 377 PLMN-KDGTLIAYGQIFMTREFLKSLRKPFCQMMEPKFEFAVKFNTLELDDSDMALFLAV 435
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
+++S R GL N + +E+++ + + L L NHPE + L A+L+ + DLR + H
Sbjct: 436 IILSGDRPGLLNVKPIEQLQETVLHSLELQLELNHPESLQLFAKLLQKMTDLRQIVTDHV 495
Query: 289 EKLVAFQMTE 298
+ + TE
Sbjct: 496 HLIQLLKKTE 505
>gi|32026|emb|CAA68398.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLAKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|344276443|ref|XP_003410018.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
[Loxodonta africana]
Length = 486
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 186 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 238
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ Q + + Q
Sbjct: 239 KAKARAILTGKTTDKSPYVIYDMNSLMMGEDKINFKHITPLQEQSKEVAIRIFQGCQFHS 298
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 299 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 357
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 358 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 417
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 418 IQENLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTEMDMSLHPL 477
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 478 LQEIYKD 484
>gi|39938474|gb|AAK14384.2| molt-regulating transcription factor HHR3 [Helicoverpa armigera]
Length = 556
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 347 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLIDVNR 406
Query: 178 NSMICLNGEVLVRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
+ ++ + + +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P R
Sbjct: 407 DQVLYGDAVLSIRECVHARDPRDVALVVGIFDAAKTIARLKLTETELALYQSLVLLWPER 466
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEKLV 292
G+R ++ + + H + NH + + L++ +P R L+ +H E L
Sbjct: 467 HGVRGNPEIQCLFNMSMAAMRHEIETNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEALC 526
Query: 293 AFQ 295
F+
Sbjct: 527 RFK 529
>gi|395744356|ref|XP_002823372.2| PREDICTED: retinoic acid receptor gamma [Pongo abelii]
Length = 635
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 399 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 458
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 459 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 518
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 519 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 578
Query: 292 VAFQM 296
+ +M
Sbjct: 579 ITLKM 583
>gi|14627168|gb|AAG60685.2| peroxisome proliferator activated receptor-gamma [Cavia porcellus]
Length = 475
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ +
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLI 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L R + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGRTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|198385545|gb|ACH86113.1| molt-regulating transcription factor HaHR3 [Helicoverpa armigera]
Length = 556
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 347 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLIDVNR 406
Query: 178 NSMICLNGEVLVRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
+ ++ + + +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P R
Sbjct: 407 DQVLYGDAVLSIRECVHARDPRDVALVVGIFDAAKTIARLKLTETELALYQSLVLLWPER 466
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEKLV 292
G+R ++ + + H + NH + + L++ +P R L+ +H E L
Sbjct: 467 HGVRGNPEIQCLFNMSMAAMRHEIETNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEALC 526
Query: 293 AFQ 295
F+
Sbjct: 527 RFK 529
>gi|417411923|gb|JAA52380.1| Putative retinoic acid receptor gamma-like isoform 1, partial
[Desmodus rotundus]
Length = 609
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 369 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 428
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 429 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 488
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 489 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 548
Query: 292 VAFQM 296
+ +M
Sbjct: 549 ITLKM 553
>gi|194221543|ref|XP_001494192.2| PREDICTED: retinoic acid receptor beta isoform 2 [Equus caballus]
Length = 336
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 224
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 225 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
>gi|401834511|gb|AFQ23187.1| peroxisome proliferator activated receptor gamma2 [Capra hircus]
Length = 505
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+ + +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSGLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>gi|73989931|ref|XP_850755.1| PREDICTED: retinoic acid receptor beta isoform 2 [Canis lupus
familiaris]
gi|410971533|ref|XP_003992222.1| PREDICTED: retinoic acid receptor beta isoform 1 [Felis catus]
Length = 448
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|27752867|gb|AAO19445.1| proliferator activated receptor-gamma1 [Capra hircus]
Length = 475
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 228 RAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|1708295|sp|P49868.1|HR3_GALME RecName: Full=Probable nuclear hormone receptor HR3; Short=gHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|409272|gb|AAA83401.1| GHR3 [Galleria mellonella]
Length = 557
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 348 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLSQDDQILLLKSGSFELAIVRLSRLID--V 405
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
N L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 406 NREQVLYGDVVLPIRECVHARDPRDVTLVVGIFDAAKTIERLKLTETELALYQSLVLLWP 465
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R ++ + + H + NH + + L++ +P R L+ +H E
Sbjct: 466 ERHGVRGNPEIQCLFNMSMAAMRHEIESNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEA 525
Query: 291 LVAFQ 295
L F+
Sbjct: 526 LCRFK 530
>gi|56967065|pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967069|pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEK-ALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++ + +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 15 KEPSKQECTESYEMTAELDD---LTEKIRKAHQETF--------PSLCQLGKYTTNSSA- 62
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 63 ----------DHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 112
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 113 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 172
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 173 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 232
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 233 RSISAKGAERVITLKM 248
>gi|335298759|ref|XP_003358390.1| PREDICTED: retinoic acid receptor beta isoform 2 [Sus scrofa]
Length = 336
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFASQLLPLEMDDTETGLLSAICLICGDRQDLE 224
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 225 EPTKVDKLQEPLLEALKIYIRRRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
>gi|24308525|ref|NP_571414.1| retinoic acid receptor gamma-A [Danio rerio]
gi|704372|gb|AAB32277.1| retinoic acid receptor gamma [Danio rerio]
Length = 499
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 206 HRIQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 265
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 266 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V+R++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 326 CGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 385
Query: 292 VAFQM 296
+ +M
Sbjct: 386 ITLKM 390
>gi|158257496|dbj|BAF84721.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 160 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 206
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 257
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 258 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 317
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L +++++ L L + + P + ++ +++ + DL
Sbjct: 318 ETGLLSAICLICGDRQDLEEPTKIDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 377
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 378 RSISAKGAERVITLKM 393
>gi|118572702|sp|Q91392.2|RARGA_DANRE RecName: Full=Retinoic acid receptor gamma-A; Short=RAR-gamma-A;
Short=zRAR gamma; AltName: Full=Nuclear receptor
subfamily 1 group B member 3-A; AltName:
Full=RAR-gamma-2
gi|68534521|gb|AAH98519.1| Retinoic acid receptor gamma a [Danio rerio]
Length = 499
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 206 HRIQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 265
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 266 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V+R++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 326 CGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 385
Query: 292 VAFQM 296
+ +M
Sbjct: 386 ITLKM 390
>gi|431919411|gb|ELK17930.1| Retinoic acid receptor beta [Pteropus alecto]
Length = 448
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|149729680|ref|XP_001494165.1| PREDICTED: retinoic acid receptor beta isoform 1 [Equus caballus]
gi|291399724|ref|XP_002716266.1| PREDICTED: retinoic acid receptor, beta isoform 2 [Oryctolagus
cuniculus]
gi|395816622|ref|XP_003781797.1| PREDICTED: retinoic acid receptor beta [Otolemur garnettii]
Length = 448
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|427789575|gb|JAA60239.1| Putative ecdysone receptor a2 daphnia magna ecdysone receptor a2
[Rhipicephalus pulchellus]
Length = 444
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 250 QRRFQHITEITILTVQLIVEFSKRVPGFDTLAREDQITLLKACSSEVMMLRGARKYDVKT 309
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 310 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPA 368
Query: 238 LRNKELVERMR-GKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + VER++ +E + M+ ++NH P N A L+S+L +LRTL +++E + F
Sbjct: 369 LVDPCKVERIQEYYIETLRMY--SENHRPPGKNYFARLLSILTELRTLGNMNAE--MCFS 424
Query: 296 MTEQQQQL 303
+ Q ++L
Sbjct: 425 LKVQNKKL 432
>gi|390358081|ref|XP_799054.3| PREDICTED: oxysterols receptor LXR-beta-like [Strongylocentrotus
purpuratus]
Length = 351
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
TI+ +VE++K IPGF L +DQ+ LLK EV+++R+A +D + ++++ N R
Sbjct: 170 TIQLIVEYSKHIPGFLTLTREDQILLLKGSAIEVIMLRVALRYDRELDAIMFGNEMPYTR 229
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
+ L+D M++FA+ ++ L L E L +I ++SP R + +E VE+M+
Sbjct: 230 KQLLEGGIGDLVDPMYNFAKSMSELDLDYAEFILLMAITILSPDRPAINERERVEQMQET 289
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
+ML L P ++ L +++ L +LR+LN HSE L ++ +Q+
Sbjct: 290 YLDMLRSYLKLRRPHEVLLLPKVLMKLTELRSLNNSHSELLFQLKVKDQK 339
>gi|234371|gb|AAB19628.1| retinoic acid receptor-beta [Gallus gallus]
Length = 425
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 194 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 253
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 254 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 313
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 314 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 370
>gi|86355087|dbj|BAE78778.1| retinoic acid receptor beta [Pelodiscus sinensis]
Length = 364
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 133 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 192
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 193 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 252
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 253 EPAKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 309
>gi|126341437|ref|XP_001369887.1| PREDICTED: retinoic acid receptor beta isoform 1 [Monodelphis
domestica]
Length = 448
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|441431287|gb|AGC31488.1| peroxisome proliferator activated receptor a1 [Scophthalmus
maximus]
Length = 469
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 20/292 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A M + ++ D++ + + A+L
Sbjct: 169 HNA-IRFGRMPQSEKLKLKAEMVTGDR-----EVGDPQIADQKTLARQIYEAYLKNFNMH 222
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L P T TL + ++ L+ ++ ++ F
Sbjct: 223 KAKARTILTGKTTTPPFVIHDMETLQLAEQTLVAKMVGSAGVLKDREVEVRIFHCCQCTS 282
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA + + ++ +
Sbjct: 283 VETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFAMLASSMN-KDGLLVAYGSGFI 341
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N E +ER
Sbjct: 342 TREFLKSLRRPFSDMMEPKFQFAMKFNALELDDSDLALFVAAIICCGDRPGLVNVEHIER 401
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
M+ + +L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 402 MQENIVQVLQLHLLANHPDDAFLFPKLLQKLADLRQLVTEHAQLVQEIKKTE 453
>gi|301605652|ref|XP_002932450.1| PREDICTED: retinoic acid receptor beta-like [Xenopus (Silurana)
tropicalis]
Length = 454
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICEDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ ++
Sbjct: 344 EPAKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKL 400
>gi|224045384|ref|XP_002197406.1| PREDICTED: retinoic acid receptor beta isoform 3 [Taeniopygia
guttata]
Length = 434
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 203 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 262
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 263 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 322
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 323 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 379
>gi|3646470|emb|CAA07225.1| peroxisome proliferator-activated receptor-gamma 2 [Sus scrofa]
Length = 504
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 256
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 257 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 316
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 317 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 375
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R L N + +E
Sbjct: 376 TREFLRSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPRLLNVKPIED 435
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 436 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 495
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 496 LQEIYKD 502
>gi|28558767|sp|P28699.2|RARG_XENLA RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
Length = 476
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 247 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 306
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA++L L + DTE GL S+I +I R L
Sbjct: 307 MTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLE 366
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E VE+++ L L + P++ + ++ + DLR ++ +E+ + ++
Sbjct: 367 EPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 423
>gi|410925156|ref|XP_003976047.1| PREDICTED: retinoic acid receptor alpha-B-like [Takifugu rubripes]
Length = 478
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 7/255 (2%)
Query: 48 KCTEKALAAELDDEQRMLSTVVR---AHLDTCAFTADKIEPML---RRAREHPTYTACPS 101
KC + ++ EL RM A ++T +AD E M+ RRA + + C
Sbjct: 156 KCLDVGMSRELVRNDRMKKKKDEKKPAEVETYVLSAD-TEQMIERVRRAHQDTFPSLCQL 214
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
N + H + L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 215 GKYTTSNSSEHRVSLDVSLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAAC 274
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221
++L++R+ + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 275 LDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFASQLLPLEMDDAE 334
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
GL S+I ++ R L+ + V+ ++ + L + + PE+ + +++ + DLR
Sbjct: 335 TGLLSAICLLCGDRQDLQESDKVDILQEPIVEALKMYVRRRRPEKPCMFPKILMKITDLR 394
Query: 282 TLNQLHSEKLVAFQM 296
+++ +E+++ +M
Sbjct: 395 SISVKGAERVITLKM 409
>gi|311268593|ref|XP_001926863.2| PREDICTED: retinoic acid receptor beta isoform 1 [Sus scrofa]
Length = 448
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFASQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRRRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|193788681|ref|NP_001123279.1| Ecr/Fxr protein [Strongylocentrotus purpuratus]
gi|167859070|gb|ACA04470.1| Ecr/Fxr [Strongylocentrotus purpuratus]
Length = 490
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
TI+ +VE++K IPGF L +DQ+ LLK EV+++R+A +D + ++++ N R
Sbjct: 309 TIQLIVEYSKHIPGFLTLTREDQILLLKGSAIEVIMLRVALRYDRELDAIMFGNEMPYTR 368
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
+ L+D M++FA+ ++ L L E L +I ++SP R + +E VE+M+
Sbjct: 369 KQLLEGGIGDLVDPMYNFAKSMSELDLDYAEFILLMAITILSPDRPAINERERVEQMQET 428
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
+ML L P ++ L +++ L +LR+LN HSE L ++ +Q+
Sbjct: 429 YLDMLRSYLKLRRPHEVLLLPKVLMKLTELRSLNNSHSELLFQLKVKDQK 478
>gi|148223591|ref|NP_001081312.1| peroxisome proliferator-activated receptor gamma [Xenopus laevis]
gi|585723|sp|P37234.1|PPARG_XENLA RecName: Full=Peroxisome proliferator-activated receptor gamma;
Short=PPAR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group C member 3
gi|214668|gb|AAA49937.1| peroxisome proliferator activated receptor gamma [Xenopus laevis]
Length = 477
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 142/293 (48%), Gaps = 25/293 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLST-VVRAHLDTCAF 78
HNA +RFGR+P+ EK ++LA + + E A +QR+L+ + +++ +
Sbjct: 179 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA-------DQRVLAKHLYDSYVKSFPL 230
Query: 79 TADKI--EPMLRRAREHP-TYT-------ACPSTLACPLNPNSHPLQGQQELLQDFSERF 128
T K P + R++ YT S P + G L S
Sbjct: 231 TKAKAPGHPDGQSHRQNSRGYTRHELADDGGGSDQGAVREPRAEQGGGDSNL-PALSVAL 289
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
+R++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 290 RGGVREITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIFTMLASLMNK--DGVLVAEGQGF 347
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA R N L L D+++ +F +++++S R GL N + +E
Sbjct: 348 MTREFLKSLRKPFSDFMEPKFEFAIRFNSLELDDSDLAIFVAVIILSGDRPGLLNVKPIE 407
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ L L L NHP+ L A+L+ + DLR + H + L + TE
Sbjct: 408 DIQDSLLQALELQLKLNHPDSAQLFAKLLQKMTDLRQVVTEHVQLLQLIKKTE 460
>gi|391339168|ref|XP_003743924.1| PREDICTED: probable nuclear hormone receptor HR3-like [Metaseiulus
occidentalis]
Length = 720
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 18/244 (7%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC T+D+I + R + +A L Q +L D S
Sbjct: 476 TISDAHSRTCLLTSDEITLKIHALRTNSISSAKIEILKS---------MSQDQLWLDCSH 526
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK IPGF L DDQ+ LLKA FE+ L+R+ +D +S L G+
Sbjct: 527 KLTSLIQQIIEFAKMIPGFMKLSQDDQIVLLKAACFELCLLRMTRYYD--VDSDCVLYGD 584
Query: 187 VLVRDSIHSSNARF---LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + + L+ +F+ L L L +T++ L+S+ V+ISP R GL+
Sbjct: 585 TLLPADVFYTQDTLELKLVSGIFELVRSLARLKLDETQLALYSAFVLISPERPGLKGTGE 644
Query: 244 VERMRGKLENMLMHVLNQNHPEQM----NLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ER+ L L ++ + L L+ LP LR L++ H E L ++
Sbjct: 645 IERVSSALLKCLHFETSREQANNIKCDTGLVDHLLLQLPKLRDLSRYHLEALSNLKLRNP 704
Query: 300 QQQL 303
Q+
Sbjct: 705 HLQM 708
>gi|62979|emb|CAA40615.1| retinoic acid receptor beta,isoform 4 [Gallus gallus]
Length = 434
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 203 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 262
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 263 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 322
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 323 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 379
>gi|326921997|ref|XP_003207239.1| PREDICTED: retinoic acid receptor beta-like [Meleagris gallopavo]
gi|4566561|gb|AAD23398.1|AF110730_1 retinoic acid receptor beta-2 [Coturnix coturnix]
gi|62977|emb|CAA40616.1| retinoic acid receptor beta [Gallus gallus]
gi|227549|prf||1706356A retinoic acid receptor
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|395540271|ref|XP_003772080.1| PREDICTED: retinoic acid receptor beta [Sarcophilus harrisii]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|332215380|ref|XP_003256821.1| PREDICTED: retinoic acid receptor beta isoform 3 [Nomascus
leucogenys]
gi|441611006|ref|XP_004087983.1| PREDICTED: retinoic acid receptor beta [Nomascus leucogenys]
Length = 336
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 224
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 225 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
>gi|63754|emb|CAA42077.1| retinoic acid receptor-beta [Gallus gallus]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|426256480|ref|XP_004021868.1| PREDICTED: retinoic acid receptor beta isoform 2 [Ovis aries]
Length = 455
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>gi|345309343|ref|XP_001517606.2| PREDICTED: retinoic acid receptor gamma-like, partial
[Ornithorhynchus anatinus]
Length = 229
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 8/201 (3%)
Query: 104 ACPLNPNSHP--------LQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVT 155
C +P HP +Q L FSE + I +VEFAKR+PGF+ L DQ+T
Sbjct: 16 GCSPSPAPHPQNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTTLSIADQIT 75
Query: 156 LLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGL 215
LLKA ++L++R+ + + ++M +G L R +H++ L D +F FA +L L
Sbjct: 76 LLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPL 135
Query: 216 HLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELIS 275
+ DTE GL S+I +I R L E V++++ L L + P Q + ++
Sbjct: 136 EMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALKLYARRRRPSQPYMFPRMLM 195
Query: 276 MLPDLRTLNQLHSEKLVAFQM 296
+ DLR ++ +E+ + +M
Sbjct: 196 KITDLRGISTKGAERAITLKM 216
>gi|350419474|ref|XP_003492193.1| PREDICTED: probable nuclear hormone receptor HR3-like [Bombus
impatiens]
Length = 512
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 131/256 (51%), Gaps = 22/256 (8%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC + ++I+ R+ P L+ + + ++L + ++
Sbjct: 272 TIADAHARTCLLSTEQIQESFRK----------PHDLSRLIYYKN---MAHEQLWLECAQ 318
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ D Q N + L G+
Sbjct: 319 KLTTVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRYLDLQQNCV--LYGD 376
Query: 187 VLV-RDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
++ +D+ ++++ L+ +F+ A + L L++TE+ L+S+ V++SP R GL+
Sbjct: 377 TMLPQDAFYTTDTAEMKLVSCVFELARSIAELKLTETELALYSAAVLLSPDRPGLKGLAE 436
Query: 244 VERMRG----KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+ R+ L + L + +C +++ +P LR ++ LH + L F+ ++
Sbjct: 437 ITRLSQAVIRALRSELXXXXXXXXXXXVTVCDAILAKIPQLREISLLHMDALAKFKRSQP 496
Query: 300 QQQLAAQQQQWHGEDN 315
+ A ++ D+
Sbjct: 497 HLEFPALHKELFSVDS 512
>gi|401461796|ref|NP_113717.1| retinoic acid receptor, beta [Rattus norvegicus]
gi|149040008|gb|EDL94092.1| retinoic acid receptor, beta [Rattus norvegicus]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|18031835|gb|AAL02361.1| retinoic acid receptor beta-2 [Mesocricetus auratus]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|354474025|ref|XP_003499232.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Cricetulus
griseus]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|327263812|ref|XP_003216711.1| PREDICTED: retinoic acid receptor gamma-A-like [Anolis
carolinensis]
Length = 441
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTTLTIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|403302652|ref|XP_003941968.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 506
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 22/180 (12%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 315 EMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 373
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G L+ S+FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 374 RTVFFEG------------CSELISSIFDFSHSLSALRFSEDEIALYTALVLINANRPGL 421
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H E+L FQ
Sbjct: 422 QEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQHVERLQIFQ 475
>gi|224045380|ref|XP_002197385.1| PREDICTED: retinoic acid receptor beta isoform 1 [Taeniopygia
guttata]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|585719|sp|P37232.1|PPARA_XENLA RecName: Full=Peroxisome proliferator-activated receptor alpha;
Short=PPAR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group C member 1
gi|214664|gb|AAA49935.1| peroxisome proliferator activated receptor alpha [Xenopus laevis]
Length = 474
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 22/305 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + +++ D + + A+L
Sbjct: 175 HNA-IRFGRMPRSEKAKLKAEVLM-----CDQDVKDSQMADLLSLARLIYDAYLKNFNMN 228
Query: 80 ADKIEPMLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L +P + T C + TL L N +Q ++ ++ F
Sbjct: 229 KVKARAILTGKASNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCTS 286
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + LA + + + ++ +
Sbjct: 287 VETVTELTEFAKSIPGFTELDLNDQVTLLKYGVYEAMFAMLASVMN-KDGMLVAYGNGFI 345
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S +M+ F+FA + N L L D+++ LF + ++ R GL N +E+
Sbjct: 346 TREFLKSLRKPIGDMMEPKFEFAMKFNALELDDSDLSLFVAALICCGDRPGLVNIPSIEK 405
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 406 MQESIVHVLKLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQTIKKTETDAALHPL 465
Query: 307 QQQWH 311
Q+ +
Sbjct: 466 LQEIY 470
>gi|269784855|ref|NP_001161579.1| liver X-like nuclear receptor [Saccoglossus kowalevskii]
gi|268054153|gb|ACY92563.1| liver X-like nuclear receptor [Saccoglossus kowalevskii]
Length = 474
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 96/170 (56%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ VVEF+KR+PGF L +DQ+ LLK EVLL+R A + + ++++ NG R
Sbjct: 293 TVQLVVEFSKRLPGFIDLNREDQIVLLKGSAIEVLLLRAAMRYIKEDDAIVFGNGLPYSR 352
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
D++ ++D M++F+ + L L + + +IV+ S R+ L ++E VE+++ K
Sbjct: 353 DTLCDGGIGDIVDPMYEFSRGMVDLDLDYGDFTVLMAIVIFSADRAQLTDRESVEKIQEK 412
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
ML L P + +++ L +LR+LN HSE L A ++ +Q+
Sbjct: 413 YLEMLRTRLKMRRPNDALVLPKVLMKLTELRSLNNSHSEMLFALKLQDQK 462
>gi|344030240|ref|NP_001230661.1| retinoic acid receptor gamma isoform 3 [Homo sapiens]
gi|332839272|ref|XP_003313719.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Pan troglodytes]
gi|397522013|ref|XP_003831075.1| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan paniscus]
gi|221041720|dbj|BAH12537.1| unnamed protein product [Homo sapiens]
Length = 432
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 196 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 255
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 256 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 315
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 316 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 375
Query: 292 VAFQM 296
+ +M
Sbjct: 376 ITLKM 380
>gi|218156242|dbj|BAH03353.1| retinoic acid receptor gamma [Lepisosteus platyrhincus]
Length = 414
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 126 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKAACLDILMLRICT 185
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 186 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 245
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L + V+R++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 246 CGDRMDLEEPQKVDRLQEPLLEALKLYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 305
Query: 292 VAFQM 296
+ +M
Sbjct: 306 ITLKM 310
>gi|50882284|gb|AAT85617.1| peroxisome proliferator-activated receptor gamma [Dicentrarchus
labrax]
Length = 522
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 33/310 (10%)
Query: 20 HNAPVRFGRVPKREKARILAA----MQQSTNTKCTEKALAAELDDEQRMLSTVVRAHL-- 73
HNA +RFGR+P+ EK ++LA M+ +AL+ L + + +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARA 256
Query: 74 -------DTCAFTADKIEPMLR-----RAREHPTYTACPSTLACPLNPNS---HPLQGQQ 118
D F ++ ++ ++ PT P T A + L +
Sbjct: 257 ILSGKTGDNAPFVIHDMKSLMEGEQFINCKQIPTQEHQPQTSALSVGHGGLMGAHLGSEC 316
Query: 119 ELLQDFSERF--------SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
+L RF + +R+V EFAK IPGF L +DQVTLLK GV EVL++ +A
Sbjct: 317 NILDAVELRFFHSCQSRSAEAVREVTEFAKSIPGFINLDLNDQVTLLKYGVIEVLIIMMA 376
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ + + ++I + R+ + S F +M+ F+F+ + N L L D+++ LF ++
Sbjct: 377 PLMN-KDGTLIAYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAV 435
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
+++S R GL N + +E+++ + + L L NHP+ + L A+L+ + DLR + H
Sbjct: 436 IILSGDRPGLLNVKPIEQLQETVLHALELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHV 495
Query: 289 EKLVAFQMTE 298
+ + TE
Sbjct: 496 HLIQLLKKTE 505
>gi|393191891|gb|AFN06393.1| ecdysone receptor [Polyrhachis vicina]
Length = 578
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 97/159 (61%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T+R +VEF+KR+PGF+ L +DQ+TLLKA EV+++R+A +D T+S+I N + R
Sbjct: 396 TVRLIVEFSKRLPGFNELMREDQITLLKACSSEVMMLRMARKYDVNTDSIIFANNQPYTR 455
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
DS + + ++ + F ++ + +++ E L ++IV+ S + L +K++ +
Sbjct: 456 DSYNVAGMGETIEDLLRFCRQMYAMRVNNAEYALLTAIVIFSERPNLLESKKVEKLQEIY 515
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
L+ + +V N+ P+ + A+L+S+L +LRTL +SE
Sbjct: 516 LKTLKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSE 554
>gi|56967051|pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
gi|379318616|pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
gi|379318617|pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
gi|379318620|pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
gi|379318621|pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 119/228 (52%), Gaps = 2/228 (0%)
Query: 71 AHLDTCAFTA--DKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERF 128
+H+++ TA D + +R+A + + C + H ++ L FSE
Sbjct: 19 SHMESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELA 78
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
+ I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++M +G L
Sbjct: 79 TKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTL 138
Query: 189 VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248
R +H++ L D +F FA +L L + DTE GL S+I +I R L V++++
Sbjct: 139 NRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQ 198
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 199 EPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 246
>gi|332215376|ref|XP_003256819.1| PREDICTED: retinoic acid receptor beta isoform 1 [Nomascus
leucogenys]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|454001|gb|AAC52134.1| peroxisome proliferator activated receptor gamma [Mus musculus]
Length = 475
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + + F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKNLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|432115885|gb|ELK37030.1| Retinoic acid receptor beta [Myotis davidii]
Length = 426
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 195 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 254
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 255 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 314
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 315 EPTKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 371
>gi|357627930|gb|EHJ77448.1| hormone receptor 3C [Danaus plexippus]
Length = 698
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D + + + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 490 EEMWLDCANKLTSMIQNIIEFAKLIPGFMKLSQDDQILLLKSGSFELAIVRLSRLID--I 547
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
N L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 548 NRDHVLYGDVVLPIRECVHARDPRDMSLVAGIFDAAKTIARLKLTETELALYQSLVLLWP 607
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R ++ + + H + NH + + L++ +P R L+ +H E
Sbjct: 608 ERHGVRGNPEIQMLFNMSMATMRHEIETNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEA 667
Query: 291 LVAFQ 295
L F+
Sbjct: 668 LCRFK 672
>gi|440900685|gb|ELR51764.1| Retinoic acid receptor gamma, partial [Bos grunniens mutus]
Length = 577
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 337 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 396
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 397 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 456
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 457 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 516
Query: 292 VAFQM 296
+ +M
Sbjct: 517 ITLKM 521
>gi|49257955|gb|AAH71082.1| LOC397983 protein [Xenopus laevis]
Length = 363
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 134 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 193
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA++L L + DTE GL S+I +I R L
Sbjct: 194 MTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLE 253
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E VE+++ L L + P++ + ++ + DLR ++ +E+ + ++
Sbjct: 254 EPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 310
>gi|431921630|gb|ELK18982.1| Retinoic acid receptor gamma, partial [Pteropus alecto]
Length = 534
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 294 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 353
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 354 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 413
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 414 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 473
Query: 292 VAFQM 296
+ +M
Sbjct: 474 ITLKM 478
>gi|1839488|gb|AAB47116.1| retinoic acid receptor gamma isoform 2.2 [Xenopus laevis]
Length = 442
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 213 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 272
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA++L L + DTE GL S+I +I R L
Sbjct: 273 MTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLE 332
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E VE+++ L L + P++ + ++ + DLR ++ +E+ + ++
Sbjct: 333 EPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 389
>gi|241997792|ref|XP_002405625.1| AamEcRA1, putative [Ixodes scapularis]
gi|215493730|gb|EEC03371.1| AamEcRA1, putative [Ixodes scapularis]
Length = 433
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 104/186 (55%), Gaps = 3/186 (1%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q Q +E T++ +VEF+KR+PGF L +DQ+TLLKA EV+++R A +D +T
Sbjct: 239 QRRFQHITEITILTVQLIVEFSKRVPGFDTLAREDQITLLKACSSEVMMLRGARKYDVKT 298
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + RD+ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 299 DSIVFANNQPYTRDNYRSASVGDSADALFRFCRKMCQLRVDNAEYALLTAIVIFS-ERPC 357
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L + VER++ + L + P N A L+S+L +LRTL +++E + F +
Sbjct: 358 LVDPHKVERIQEYYIDTLRMYSENHRPPGKNYFARLLSILTELRTLGNMNAE--MCFSLK 415
Query: 298 EQQQQL 303
Q ++L
Sbjct: 416 VQNKKL 421
>gi|395834996|ref|XP_003790471.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Otolemur
garnettii]
Length = 445
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E VE+++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVEKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|7446201|pir||JE0279 peroxisome proliferator-activated receptor gamma 1 - pig
gi|3646468|emb|CAA07224.1| peroxisome proliferator-cctivated receptor gamma 1 [Sus scrofa]
Length = 475
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R L N + +E
Sbjct: 347 TREFLRSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPRLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|291388536|ref|XP_002710660.1| PREDICTED: retinoic acid receptor, gamma-like, partial [Oryctolagus
cuniculus]
Length = 303
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 63 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 122
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 123 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDTETGLLSAICLI 182
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 183 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 242
Query: 292 VAFQM 296
+ +M
Sbjct: 243 ITLKM 247
>gi|148224349|ref|NP_001081663.1| retinoic acid receptor gamma [Xenopus laevis]
gi|1839486|gb|AAB47115.1| retinoic acid receptor gamma isoform 2.1 [Xenopus laevis]
Length = 442
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 213 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 272
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA++L L + DTE GL S+I +I R L
Sbjct: 273 MTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLE 332
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E VE+++ L L + P++ + ++ + DLR ++ +E+ + ++
Sbjct: 333 EPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 389
>gi|348535610|ref|XP_003455292.1| PREDICTED: retinoic acid receptor beta-like [Oreochromis niloticus]
Length = 463
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L + + DTE GL S+I +IS R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPIEMDDTETGLLSAICLISGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ + + + DLR+++ +E++++ +M
Sbjct: 337 EPSKVDQLQEPLLEALKIYVRKRRPSKPHMFPKTLMKITDLRSISAKGAERVISLKM 393
>gi|51235736|gb|AAT98633.1| orphan nuclear receptor E75C [Manduca sexta]
Length = 256
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%), Gaps = 2/86 (2%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+ ++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 170 VRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 229
Query: 84 EPMLRRAREHPTYTACPSTLACPLNP 109
M RAR+ PTY+ TLACPLNP
Sbjct: 230 AAMRARARDCPTYSQ--PTLACPLNP 253
>gi|50924612|gb|AAH79684.1| Ppara protein [Xenopus laevis]
Length = 474
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 24/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + ++ D + + A+L
Sbjct: 175 HNA-IRFGRMPRSEKAKLKAEVLM-----CDQDVKDTQMADLLSLARLIYDAYLKNFNMN 228
Query: 80 ADKIEPMLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L +P + T C + TL L N +Q ++ ++ F
Sbjct: 229 KVKARAILTGKASNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCTS 286
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + LA + + + M+ G
Sbjct: 287 VETVTELTEFAKSIPGFTELDLNDQVTLLKYGVYEAMFAMLASVMNK--DGMLVAYGNGF 344
Query: 189 VRDSIHSSNARFLMDSM---FDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ S + + D M F+FA + N L L D+++ LF + ++ R GL N +E
Sbjct: 345 ITREFLKSLRKPIGDMMEPKFEFAMKFNALELDDSDLSLFVAALICCGDRPGLVNIPSIE 404
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 405 KMQESIVHVLKLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQTIKKTETDAALHP 464
Query: 306 QQQQWH 311
Q+ +
Sbjct: 465 LLQEIY 470
>gi|148235186|ref|NP_001083282.1| peroxisome proliferator-activated receptor alpha [Xenopus laevis]
gi|37747637|gb|AAH60004.1| Ppara protein [Xenopus laevis]
Length = 474
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 24/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + ++ D + + A+L
Sbjct: 175 HNA-IRFGRMPRSEKAKLKAEVLM-----CDQDVKDTQMADLLSLARLIYDAYLKNFNMN 228
Query: 80 ADKIEPMLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L +P + T C + TL L N +Q ++ ++ F
Sbjct: 229 KVKARAILTGKASNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCTS 286
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + LA + + + M+ G
Sbjct: 287 VETVTELTEFAKSIPGFTELDLNDQVTLLKYGVYEAMFAMLASVMNK--DGMLVAYGNGF 344
Query: 189 VRDSIHSSNARFLMDSM---FDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ S + + D M F+FA + N L L D+++ LF + ++ R GL N +E
Sbjct: 345 ITREFLKSLRKPIGDMMEPKFEFAMKFNALELDDSDLSLFVAALICCGDRPGLVNIPSIE 404
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 405 KMQESIVHVLKLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQTIKKTETDAALHP 464
Query: 306 QQQQWH 311
Q+ +
Sbjct: 465 LLQEIY 470
>gi|345323246|ref|XP_001508165.2| PREDICTED: peroxisome proliferator-activated receptor alpha-like
[Ornithorhynchus anatinus]
Length = 446
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 34/299 (11%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + +E+ D + + + A+L F
Sbjct: 145 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHEVEDSEIADLKSLAKRIYEAYLKN--FN 196
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 197 MNKVKARVILAGKTTNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 254
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + LA + + + ++
Sbjct: 255 CTSVETVTELTEFAKSIPGFAGLDLNDQVTLLKYGVYEAIFAMLASVMN-KDGMLVAYGS 313
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVI----SPSRSGLR 239
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ P G+
Sbjct: 314 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGGECPVVGGVG 373
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ +E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 374 H---IEKMQEGIVHVLKLHLQSNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTE 429
>gi|134270849|gb|ABO69005.1| peroxisome proliferator-activated receptor gamma [Dentex dentex]
Length = 505
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 144/310 (46%), Gaps = 33/310 (10%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTN--------------------------TKCTEKA 53
HNA +RFGR+P+ EK ++LA TK +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARA 256
Query: 54 -LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH 112
L+ + D + +++ ++ F K P ++ T + + H
Sbjct: 257 ILSGKTGDNAPFVIHDMKSLMEGEQFINCKQIPNQEHQQQTSALTIGHGGVTGAYLGSDH 316
Query: 113 PLQGQQEL--LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
EL Q R + +R+V EFAK IPGF L +DQVTLLK GV E+L++ +A
Sbjct: 317 SGMDAVELRFFQSCQSRSAEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEILIIMMA 376
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ + + ++I + R+ + S F +M+ F+F+ + N L L D+++ LF ++
Sbjct: 377 PLMN-KDGTLISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAV 435
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
+++S R GL N + +E+++ + + L L NHPE + L A+L+ + DLR + H
Sbjct: 436 IILSGDRPGLLNVKPIEQLQETVLHSLELQLKLNHPESLQLFAKLLQKMTDLRQIVTDHV 495
Query: 289 EKLVAFQMTE 298
+ + TE
Sbjct: 496 HLIQLLKKTE 505
>gi|156523279|ref|NP_001096037.1| peroxisome proliferator-activated receptor alpha [Danio rerio]
gi|113037637|gb|ABI30003.1| peroxisome proliferator activated receptor alpha [Danio rerio]
Length = 459
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 137/291 (47%), Gaps = 22/291 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAM---------QQSTNTKCTEKALAAELDDEQRMLSTVVR 70
HNA +RFGR+P+ EK R+ A + Q T K +A + + T++
Sbjct: 163 HNA-IRFGRMPQSEKLRLKAEILTGERDVEDDQKTLAKQIYEAYVKNFNMNKSKARTILT 221
Query: 71 AHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
T F +E L+ A + T+ A +C N P + +
Sbjct: 222 GKTSTPPFVIHDMET-LQLAEQ--TFVA-KMMGSCGGLLNKDP---EVRIFHCCQCTSVE 274
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGEVLV 189
T+ ++ EFAK +PGFS L +DQVTLLK GV E L LA CM ++ ++ +
Sbjct: 275 TVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCM--NKDGLLVAYGSGFIT 332
Query: 190 RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N +ERM
Sbjct: 333 REFLKSLRRPFSDMMEPKFQFAMKFNSLELDDSDLALFVAAIICCGDRPGLVNVPHIERM 392
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ + N+L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 393 QESIVNVLHLHLKSNHPDHGFLFPKLLQKLVDLRQLVTEHAQLIQEIKKTE 443
>gi|45593124|ref|NP_035373.1| retinoic acid receptor beta [Mus musculus]
gi|8170810|gb|AAB25784.2| retinoic acid nuclear receptor isoform beta 2 [Mus sp.]
gi|49904685|gb|AAH76597.1| Retinoic acid receptor, beta [Mus musculus]
gi|148688696|gb|EDL20643.1| retinoic acid receptor, beta, isoform CRA_a [Mus musculus]
gi|226403|prf||1510302B retinoic acid receptor beta
Length = 448
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|395834998|ref|XP_003790472.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Otolemur
garnettii]
Length = 456
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E VE+++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVEKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|374534098|gb|AEZ53930.1| peroxisome proliferator activated receptor gamma [Capra hircus]
Length = 475
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+ + +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSGLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>gi|443699249|gb|ELT98830.1| hypothetical protein CAPTEDRAFT_226941 [Capitella teleta]
Length = 941
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 9/191 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
G Q F +RF+ + DVV FAK+IPGF L +QV L+K G FE V + D
Sbjct: 738 GGDACWQIFKKRFTEIVHDVVHFAKKIPGFVDLDIGEQVQLIKHGSFEAACVVHSAFIDG 797
Query: 176 QTNSMICLN--GEV----LVRDSIHSSN--ARFLMDSMFDFAERLNGLHLSDTEIGLFSS 227
NSM N G+ RD + +S D MF+F+ RLN L+ E +F++
Sbjct: 798 DRNSMFLCNAAGDTGTSQATRDQLKASFILGENFFDLMFNFSSRLNSFQLAPVETAIFTA 857
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP-EQMNLCAELISMLPDLRTLNQL 286
+++I P R GL+ ++ V ++ + L ++QNHP + L L+ ++ +LR L+
Sbjct: 858 LMLIQPDRQGLKQRDQVNALQETIIRSLHAQISQNHPSDASGLFPRLLMVISNLRELSVE 917
Query: 287 HSEKLVAFQMT 297
H L + +++
Sbjct: 918 HKRILSSLKIS 928
>gi|390476422|ref|XP_002759706.2| PREDICTED: retinoic acid receptor beta isoform 1 [Callithrix
jacchus]
Length = 448
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%)
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
FSE + I +VEFAKR+PGF+ L DQ+TL+KA ++L++R+ + + ++M
Sbjct: 221 FSELATKCIIKIVEFAKRLPGFTSLTIADQITLMKAACLDILILRICTRYTPEQDTMTFS 280
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 281 DGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTK 340
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 341 VDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|65032|emb|CAA42039.1| retinoc acid receptor gamma B [Xenopus laevis]
Length = 442
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 213 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 272
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA++L L + DTE GL S+I +I R L
Sbjct: 273 MTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLE 332
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E VE+++ L L + P++ + ++ + DLR ++ +E+ + ++
Sbjct: 333 EPEKVEKLQEPLLEGLKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 389
>gi|344298847|ref|XP_003421102.1| PREDICTED: peroxisome proliferator-activated receptor delta-like
[Loxodonta africana]
Length = 441
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 22/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S ++ +++ D + + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTASEGSRHN-----SQVADLKAFSKHIYNAYLKNFNMT 193
Query: 80 ADKIEPMLRRAREHP---------TYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
K +L H T L NS P + + + + +
Sbjct: 194 KKKARAILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNSLPPYKEISVHVFYRCQCTT 253
Query: 131 --TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R+++EFAK IP F L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 254 VETVRELIEFAKSIPSFGNLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 311
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 312 VTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVSQVE 371
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ + + L L NHP+ L +L+ + DLR L H++ + + TE + L
Sbjct: 372 AIQDTILHALEFHLQANHPDVQYLFPKLLQKMADLRQLVTEHAQMMQCIKKTETETSL 429
>gi|339248615|ref|XP_003373295.1| hypothetical protein Tsp_10135 [Trichinella spiralis]
gi|316970622|gb|EFV54525.1| hypothetical protein Tsp_10135 [Trichinella spiralis]
Length = 834
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPK+EKA++LA +Q++ NT L + ++D ++++ST+V ++++T ++ +
Sbjct: 6 VRFGRVPKKEKAKLLAEIQRA-NTNNQLANLMSTMEDAEKVVSTLVASYIETDSYFKSRS 64
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
+ ++ REH + S ACPL+P L G + SE + P IR V+ FAK IP
Sbjct: 65 QLLIENFREH-RFNMRISLTACPLHPED-VLMGNIAYTDEMSENYLPAIRSVITFAKNIP 122
Query: 144 GFSLLCHDDQVTLLKA 159
GFS+L +DQ+ LLK
Sbjct: 123 GFSILLEEDQIILLKV 138
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
N ELVE+ +L +L V+ H + L+ +P+LRTLN LH+EKL+
Sbjct: 259 NPELVEKCSQRLRQLLEQVIYMQHGNDVRFFNTLMQNIPNLRTLNTLHAEKLL 311
>gi|296228829|ref|XP_002759976.1| PREDICTED: nuclear receptor ROR-gamma [Callithrix jacchus]
Length = 503
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 35/249 (14%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP 109
T +A A L + + ++ +V +++ +TC ++E +LR+ S++
Sbjct: 256 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SSIFSREEV 302
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LV
Sbjct: 303 TGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLV-- 360
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
M+C R + L+ S+FDF+ L+ L S+ EI L++++V
Sbjct: 361 ----------MMCRAYNAYNRTGFFECCSE-LISSIFDFSHSLSALSFSEDEIALYTALV 409
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQL 286
+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L
Sbjct: 410 LINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLRSLCSQ 463
Query: 287 HSEKLVAFQ 295
H E+L FQ
Sbjct: 464 HVERLQIFQ 472
>gi|185133653|ref|NP_001117032.1| peroxisome proliferator-activated receptor alpha [Salmo salar]
gi|89143253|emb|CAJ76702.1| peroxisome proliferator-activated receptor alpha [Salmo salar]
Length = 464
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 23/294 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A + T + E A D++ + + A+L
Sbjct: 163 HNA-IRFGRMPQSEKLKLKAEIL--TGDREVEDPQQA---DQKTLARHIYEAYLKNFNMN 216
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPL--NPNSHPLQGQQE--LLQDFSER 127
K +L P T TL + SH L+ + E +
Sbjct: 217 KAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGTAGSHLLEKEAEVRIFHCCQCT 276
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGE 186
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA CM ++ ++
Sbjct: 277 SVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFALLASCM--NKDGLLVAYGSG 334
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S F +M+ F FA + NGL L D+++ LF + ++ R GL N +
Sbjct: 335 FITREFLKSLRRPFSDMMEPKFQFAMKFNGLELDDSDLALFVAAIICCGDRPGLVNVTHI 394
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
E M+ + +L L NHP+ L L+ L DLR L H++ + + TE
Sbjct: 395 ECMQENIVQVLQLHLLANHPDDTFLFPNLLQKLADLRQLVTEHAQLVQEIKKTE 448
>gi|297491325|ref|XP_002698794.1| PREDICTED: retinoic acid receptor beta [Bos taurus]
gi|296472297|tpg|DAA14412.1| TPA: retinoic acid receptor beta [Bos taurus]
Length = 346
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 115 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 174
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 175 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETGLLSAICLICGDRQDLE 234
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 235 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 291
>gi|226278|prf||1504304A retinoic acid receptor
Length = 396
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+P F+ L DQ+TLLKA ++L++R+
Sbjct: 162 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPSFATLTIADQITLLKAACLDILMLRICT 221
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 222 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 281
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 282 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 341
Query: 292 VAFQM 296
+ +M
Sbjct: 342 ITLKM 346
>gi|242019559|ref|XP_002430228.1| Ecdysone receptor, putative [Pediculus humanus corporis]
gi|212515324|gb|EEB17490.1| Ecdysone receptor, putative [Pediculus humanus corporis]
Length = 520
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 98/170 (57%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEFAKR+PGF L +DQ+ LLKA EV+++R+A +D ++S++ N + R
Sbjct: 338 TVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMLRMARRYDVGSDSILFANNQPYTR 397
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
DS + +D + F ++ G+ + + E L ++IV+ S S + ++ +
Sbjct: 398 DSYSLAGMGETVDDLLRFCRQMYGMKVDNAEYALLTAIVIFSERPSLIEGWKVEKIQEIY 457
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
LE + ++V N+ P + A+L+S+L +LRTL L+SE + ++ ++
Sbjct: 458 LEALKVYVDNRRKPRSGTIFAKLLSVLTELRTLGNLNSEMCFSLKLKNKK 507
>gi|218156246|dbj|BAH03355.1| retinoic acid receptor beta [Callorhinchus callorynchus]
Length = 375
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + ++
Sbjct: 133 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPDQDT 192
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 193 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 252
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ ++
Sbjct: 253 DAGKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKL 309
>gi|50882276|gb|AAT85613.1| peroxisome proliferator-activated receptor alpha [Sparus aurata]
Length = 477
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 145/313 (46%), Gaps = 43/313 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAA-ELDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A K EK +A L D + ++ + A++ +
Sbjct: 158 HNA-IRFGRMPQAEKLKLKA------ERKVVEKEVAGPMLADHKILVREIHGAYMKNFSM 210
Query: 79 TADKIEPMLR-RAREHP-------TYTACPSTLACPL--NPNSHPLQGQQ---------- 118
K +L + + P T+ TLA + N P G Q
Sbjct: 211 NKAKARLILTGKTSKQPFIIHDMETFQLAEKTLAAHMVNGDNQEPESGLQAGELVPAVGC 270
Query: 119 -ELLQDFSE---------RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
EL Q +E T+ ++ EFAK +PGF L +DQVTLLK GV+E L
Sbjct: 271 GELQQREAEARLFHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTL 330
Query: 169 LA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLF 225
LA CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF
Sbjct: 331 LASCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALF 388
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++ R GL + LVE+++ + +L L NHP+ L L+ L DLR L
Sbjct: 389 VAAIICCGDRPGLVDVPLVEQLQESIVQVLRLHLLANHPDDTFLFPRLLQKLADLRELVT 448
Query: 286 LHSEKLVAFQMTE 298
H++ + + TE
Sbjct: 449 EHAQLVQEIKTTE 461
>gi|354490221|ref|XP_003507258.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Cricetulus
griseus]
Length = 485
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 245 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 304
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 305 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 364
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 365 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 424
Query: 292 VAFQM 296
+ +M
Sbjct: 425 ITLKM 429
>gi|289629241|ref|NP_001166202.1| retinoic acid receptor beta [Cavia porcellus]
gi|51092411|gb|AAP33792.2| retinoic acid receptor beta [Cavia porcellus]
Length = 410
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|321470014|gb|EFX80992.1| hypothetical protein DAPPUDRAFT_50546 [Daphnia pulex]
Length = 303
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 14/228 (6%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
TV +AH CA+T +K ++R T P + N ++ + +
Sbjct: 56 TVSQAHHAHCAYTEEKTRNIVR--------TPVPIVMDEGGNNDNADETRRIATWSALAT 107
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+P+I+ VVEFAKR+PGF L DDQ+ L+K G FEV L ++ + +SQ +M +G
Sbjct: 108 HMTPSIQRVVEFAKRVPGFPELSQDDQLILIKIGFFEVWLGHVSRLINSQEGTMTLTDGV 167
Query: 187 VLVR---DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L + D I ++ + ++ FAE LN + ++D+E+ LFS+ V++SP R + + +
Sbjct: 168 TLSKPQMDLIFDAD---FIQTVMGFAEGLNQMSMNDSEMALFSAAVLLSPDRPVINDAKG 224
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
+ + + ++ + L L +NH L ++ + +LR + H +L
Sbjct: 225 IAQYQERITDALRLQLLRNHASDPGLINAVLQKIVELRAIGHRHQSQL 272
>gi|291244718|ref|XP_002742241.1| PREDICTED: retinoic acid receptor, beta-like [Saccoglossus
kowalevskii]
Length = 645
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 116/216 (53%), Gaps = 7/216 (3%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+ Q ++ S I VVEFAK++PGF L DQ+TLLKA E++++R++ F+ S
Sbjct: 384 MFQYVTDMSSRAIIMVVEFAKKLPGFLQLTTPDQITLLKAACLEIMVLRISYRFNRDDGS 443
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ +G L + + LMD++ FA++++ L+L DTE+ L S+I +IS RSGL
Sbjct: 444 VTFTSGLTLSNKQLKTGGFGTLMDTIGQFAQQISSLNLDDTELALLSAICLISGDRSGLE 503
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
+E+M+ L L + + P + + A+++ + DLR+++ +E+++ ++
Sbjct: 504 EPLKIEKMQEPLLEALRIYVRRRRPTEPHAFAKILMKITDLRSISVKGAERVLHLKLQIP 563
Query: 300 -------QQQLAAQQQQWHGEDNSKSPTGSSWSDVT 328
Q+ + + ++ +D S T S S VT
Sbjct: 564 VDMPQIIQEMVESDEESTENDDEKGSATTSVPSPVT 599
>gi|270305458|gb|ACZ71480.1| hormone receptor 3 [Mythimna separata]
Length = 511
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 302 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLIDVNR 361
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
+ + L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 362 DQV--LYGDVVLPIRECVHARDPRDVALVVGIFDAAKTIARLKLTETELALYQSLVLLWP 419
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R + + + H + NH + + L++ +P R L+ +H E
Sbjct: 420 ERHGVRGNPEITCLFNMSMAAMRHEIETNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEA 479
Query: 291 LVAFQ 295
L F+
Sbjct: 480 LCRFK 484
>gi|200670|gb|AAA40035.1| retinoic acid receptor gamma [Mus musculus]
Length = 458
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|345327919|ref|XP_001505930.2| PREDICTED: retinoic acid receptor beta-like [Ornithorhynchus
anatinus]
Length = 527
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 296 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 355
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 356 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 415
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 416 EPIKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 472
>gi|58007248|gb|AAT85618.1| peroxisome proliferator-activated receptor gamma [Sparus aurata]
Length = 522
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 145/310 (46%), Gaps = 33/310 (10%)
Query: 20 HNAPVRFGRVPKREKARILAA----MQQSTNTKCTEKALAAELDDEQRMLSTVVRAHL-- 73
HNA +RFGR+P+ EK ++LA M+ +AL+ L + + +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALSRHLYEAYLKYFPLTKAKARA 256
Query: 74 -------DTCAFTADKIEPMLR-----RAREHPTYTACPSTLACPLNPNS---------H 112
D F ++ ++ ++ P P T A H
Sbjct: 257 ILSGKTGDNAPFVIHDMKSLMEGEQFINCKQLPNQEHQPQTSALTFGHGGVTGAYLGLEH 316
Query: 113 PLQGQQEL--LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
EL Q R + +R+V EFAK IPGF L +DQVTLLK GV EVL++ +A
Sbjct: 317 SGMDAVELRFFQSCQSRSAEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEVLIIMMA 376
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ + + ++I + R+ + S F +M+ F+F+ + N L L D+++ LF ++
Sbjct: 377 PLMN-KDGTLISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNVLELDDSDMALFLAV 435
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
+++S R GL N + +E+++ + + L L NHP+ + L A+L+ + DLR + H
Sbjct: 436 IILSGDRPGLMNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHV 495
Query: 289 EKLVAFQMTE 298
+ + TE
Sbjct: 496 HLIQLLKKTE 505
>gi|384948580|gb|AFI37895.1| retinoic acid receptor alpha isoform 1 [Macaca mulatta]
Length = 462
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 101/185 (54%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 216 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 275
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + D E GL S+I +I
Sbjct: 276 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 335
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L + V+ ++ L L + + P + ++ +++ + DLR+++ +E++
Sbjct: 336 CGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERV 395
Query: 292 VAFQM 296
+ +M
Sbjct: 396 ITLKM 400
>gi|270305456|gb|ACZ71479.1| hormone receptor 3 [Xestia cnigrum]
Length = 510
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 301 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLIDVNR 360
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
+ + L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 361 DQV--LYGDVVLPIRECVHARDPRDVALVVGIFDAAKTIARLKLTETELALYQSLVLLWP 418
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R ++ + + H + NH + + L++ +P R L+ +H E
Sbjct: 419 ERHGVRGNPEIQCLFNMSMAAMRHEIETNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEA 478
Query: 291 LVAFQ 295
L F+
Sbjct: 479 LCRFK 483
>gi|200672|gb|AAA40036.1| retinoic acid receptor gamma [Mus musculus]
Length = 447
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRDPAKPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|207029013|ref|NP_001128722.1| retinoic acid receptor, gamma isoform 2 [Rattus norvegicus]
Length = 485
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 245 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 304
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 305 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 364
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 365 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 424
Query: 292 VAFQM 296
+ +M
Sbjct: 425 ITLKM 429
>gi|301628731|ref|XP_002943500.1| PREDICTED: nuclear receptor ROR-gamma-like [Xenopus (Silurana)
tropicalis]
Length = 397
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 26/244 (10%)
Query: 55 AAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPL 114
A ELD ++ VV A+ +TC + ++ M T+T P S
Sbjct: 151 AVELD---LLMQNVVGAYRETCKLHQESLQAM-----RWETFT--------PAEIQSFQQ 194
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
+ ++ + + I+ +VEFAKR+ GF L +DQ+ LLKAG E+LL+R++ F+
Sbjct: 195 KTMDQMWERCVCHITDAIQYIVEFAKRLSGFMELNPNDQIVLLKAGAMELLLIRMSRAFN 254
Query: 175 SQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
NS I G+ D S L+ +MFD L L+LS+ E+ FSS+V++ PS
Sbjct: 255 C-YNSTIYFEGKYAPLDLFQSLGCNDLISAMFDLCHSLCALNLSEHEMAFFSSMVLLDPS 313
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD---LRTLNQLHSEKL 291
+ L+ KE VE + KL+ +L + E +I LP L + QLH EKL
Sbjct: 314 QPWLQEKEKVESLHMKLDLSFRQLLRRTRRE------SIICKLPQRGRLLGICQLHMEKL 367
Query: 292 VAFQ 295
F+
Sbjct: 368 NIFR 371
>gi|170060507|ref|XP_001865834.1| nuclear receptor 3 [Culex quinquefasciatus]
gi|167878948|gb|EDS42331.1| nuclear receptor 3 [Culex quinquefasciatus]
Length = 542
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 35/231 (15%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
N PV FG ++ C + AE D ++ T+ AH +T
Sbjct: 307 QNTPVSFGE----------------DDSSCDSHSKWAEGDINDVLIKTLAEAHANT-NHK 349
Query: 80 ADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFA 139
D + M R++++ + Q+EL D +E+ + I+ ++EFA
Sbjct: 350 LDIVHEMFRKSQDVTRILYYKN-------------MSQEELWLDCAEKLTAMIQQIIEFA 396
Query: 140 KRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNAR 199
K IPGF L DDQ+ LLK G FE+ +VR++ + D TNS+ L G++++ + ++
Sbjct: 397 KLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLMDLSTNSV--LYGDIMLPQDVFYTSDS 454
Query: 200 F---LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
F L+ +F+ A+ + L L++TE+ L+ S+V++ P R+G+R ++R+
Sbjct: 455 FEMKLVACIFETAKSIAELKLTETELALYQSLVLLWPERNGVRGNTEIQRL 505
>gi|78675507|dbj|BAE47509.1| ecdysone receptor A isoform [Pheidole megacephala]
Length = 633
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 102/170 (60%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+KR+PGF+ L +DQ+TLLKA EV+++R+A +D QT+S+I N + R
Sbjct: 451 TVQLIVEFSKRLPGFNELLREDQITLLKACSSEVMMLRMARKYDVQTDSIIFANNQSYTR 510
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
DS + + ++ + F ++ + +++ E L ++IV+ S + L ++++ +
Sbjct: 511 DSYNVAGMGDTIEDLLRFCRQMYAMRVNNAEYALLTAIVIFSERPNLLESRKVEKLQEIY 570
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
L+ + +V N+ P+ + A+L+S+L +LRTL +SE + + ++
Sbjct: 571 LKTLKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEMCLNLKFKNKK 620
>gi|74195170|dbj|BAE28323.1| unnamed protein product [Mus musculus]
Length = 458
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|307188184|gb|EFN73016.1| Ecdysone-induced protein 78C [Camponotus floridanus]
Length = 371
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNP-----NSHPLQGQQ 118
++ V +AH C FT + + R+ P + S A P +P + ++ Q+
Sbjct: 112 VIHQVSQAHHAHCGFTEESTRGLTRKPMIIPASNS--SQPASPEDPEAASSTAETVESQR 169
Query: 119 -ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
L Q F+ R +P+++ VVEFAKR PGF L DDQ+ L+K G FEV L ++ M +
Sbjct: 170 IWLWQQFATRVTPSVQRVVEFAKRTPGFCELSQDDQLILIKVGFFEVWLCHISKM--TTD 227
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
NSM +G R + + ++ LN L+DTE+GLFS+ V++S R G
Sbjct: 228 NSMTFEDGTYFTRQQLELMYEPDFVSALMQVTSSLNAHQLTDTELGLFSAAVLLS-ERPG 286
Query: 238 LRNKELVERMRGK-LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + + V+R++ + LE + + + + +P+LR L H L F+
Sbjct: 287 LNDVKAVQRLQDRVLEALRVQAARPSSEGSGGSVTSISQRIPELRALGARHVSLLDWFR 345
>gi|429330061|gb|ADH95692.2| peroxisome proliferator activated receptor gamma [Megalobrama
amblycephala]
Length = 510
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 27/298 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + E A D + + + ++L T
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEFSTDVDHMHPESA------DLRALARHLYESYLKYFPLT 256
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACP---LNPNSHPLQGQQE----LLQDFSERF-- 128
K +L + + P +L +N P+Q + ++++ RF
Sbjct: 257 KAKARAILSGKTSDNAPFVIHDMKSLMEGEHMINCRQMPMQEHRRSDVGIMREVELRFFH 316
Query: 129 ------SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + +V EFAK IPGF L +DQVTLLK GV EVL++ +A + + + ++I
Sbjct: 317 SCQSRSAEAVSEVTEFAKSIPGFVNLDLNDQVTLLKYGVIEVLIIMMAPLMN-KDGTLIS 375
Query: 183 LNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
+ R+ + S F +M+ F+F+ + N L L D+++ LF +++++S R GL N
Sbjct: 376 YGQIFMTREFLKSLRKPFCEMMEPKFEFSVKFNMLELDDSDMALFLAVIILSGDRPGLLN 435
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ +E ++ + + L L NHP+ + L A+++ + DLR L H + + + TE
Sbjct: 436 VKPIEDLQETVLHSLELQLKTNHPDSLQLFAKVLQKMTDLRQLVTDHVQLIQLMKETE 493
>gi|354490219|ref|XP_003507257.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Cricetulus
griseus]
gi|344239273|gb|EGV95376.1| Retinoic acid receptor gamma [Cricetulus griseus]
Length = 458
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|207028980|ref|NP_001128721.1| retinoic acid receptor, gamma isoform 1 [Rattus norvegicus]
gi|149031940|gb|EDL86852.1| rCG50849 [Rattus norvegicus]
Length = 458
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|112181196|ref|NP_001036192.1| retinoic acid receptor gamma isoform 2 [Mus musculus]
Length = 447
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|148226176|ref|NP_001088831.1| peroxisome proliferator-activated receptor alpha [Xenopus laevis]
gi|56388558|gb|AAH87622.1| LOC496107 protein [Xenopus laevis]
Length = 469
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 28/308 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + ++ D + + A+L F
Sbjct: 170 HNA-IRFGRMPRSEKAKLKAEVLM-----CDQDVKDTQMTDLLSLARFIYEAYLKN--FN 221
Query: 80 ADKIEP---MLRRARE-----HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---SE 126
+K++ ++ +A H T C + TL L N +Q ++ ++ F
Sbjct: 222 MNKVKARAILIGKASTPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQC 279
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + LA + + + M+ G
Sbjct: 280 TSVETVTELTEFAKSIPGFTELDLNDQVTLLKYGVYEAMFAMLASVMNK--DGMLVAYGN 337
Query: 187 VLVRDSIHSSNARFLMDSM---FDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ + + D M F+FA + N L L D+++ LF + ++ R GL N
Sbjct: 338 GFITREFLKGLRKPIGDMMEPKFEFAMKFNALELDDSDLSLFVAALICCGDRPGLVNVSS 397
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 398 IEKMQESIVHVLKLHLQSNHPDDGFLFPKLLQKMADLRQLVTEHAQLVQTIKKTETDAAL 457
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 458 HPLLQEIY 465
>gi|348534190|ref|XP_003454586.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 3 [Oreochromis niloticus]
Length = 531
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 150/322 (46%), Gaps = 48/322 (14%)
Query: 20 HNAPVRFGRVPKREKARILAA----MQQSTNTKCTEKALAAELDDEQRMLSTVVRAHL-- 73
HNA +RFGR+P+ EK ++LA M+ +ALA L + + +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALARHLYEAYLKYFPLTKAKARA 256
Query: 74 -------DTCAFTADKIEPMLRRAR----------EHPTYTACPSTLACPLNPNSHPLQ- 115
D F ++ ++ + EH +T S LA +HP+
Sbjct: 257 ILSGKTGDNVPFVIHDMKSLMEGEQFINCKQIPVPEHHQHTF--SHLASGYT-ETHPMSE 313
Query: 116 ----------GQQE-------LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLK 158
G E Q R + +R+V EFAK IPGF L +DQVTLLK
Sbjct: 314 SEVMRMTGFGGHGEADAVELRFFQSCQSRSAEAVREVTEFAKSIPGFVDLDLNDQVTLLK 373
Query: 159 AGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLH 216
GV EVL++ ++ + + + ++I + R+ + S F +M+ F+F+ + N L
Sbjct: 374 YGVIEVLIIMMSPLMN-KDGTLISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLE 432
Query: 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISM 276
L D+++ LF +++++S R GL N + +E+++ + + L L NHP+ + L A+L+
Sbjct: 433 LDDSDMALFLAVIILSGDRPGLLNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQK 492
Query: 277 LPDLRTLNQLHSEKLVAFQMTE 298
+ DLR + H + + TE
Sbjct: 493 MTDLRQIVTDHVHLIQLLKKTE 514
>gi|6448518|emb|CAB61237.1| peroxisome proliferator activated receptor beta [Crocodylus
niloticus]
Length = 304
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 22/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S C +A D + + A+L T
Sbjct: 11 HNA-IRFGRMPEAEKRKLVAGLTASA-ISCQNPQVA----DLKAFSKHIYNAYLKNFNMT 64
Query: 80 ADKIEPMLR-RAREHPTYTA--------CPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
K +L +A P + L N P + + + + +
Sbjct: 65 KKKARGILTGKASSTPPFVIHDMDTLWQAEKGLVWKQLVNGIPPYKEIGVHVFYRCQCTT 124
Query: 131 --TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP F L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 125 VETVRELTEFAKSIPSFVGLYLNDQVTLLKYGVHEAIFAMLASIMNK--DGLLVANGNGF 182
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +M+ F+FA + N L L D+++ LF + +++ R GL N +LVE
Sbjct: 183 VTREFLRSLRKPFNEIMEPKFEFAVKFNSLELDDSDLALFVAAIILCGDRPGLMNVKLVE 242
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ + L L NHP+ L +L+ + DLR L H++ + + TE + L
Sbjct: 243 DIQDNILRALEFHLQTNHPDAQYLFPKLLQKMADLRQLVTEHAQLVQKIKKTETETSL 300
>gi|78172877|gb|ABB29463.1| peroxisome proliferator-activated receptor alpha 1 [Sparus aurata]
Length = 335
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 146/313 (46%), Gaps = 43/313 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAA-ELDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A K EK +A L D + ++ + A++ +
Sbjct: 23 HNA-IRFGRMPQAEKLKLKA------ERKVVEKEVAGPMLADHKILVREIHGAYMKNFSM 75
Query: 79 TADKIEPMLR-RAREHP-------TYTACPSTLACPL--NPNSHPLQGQQ---------- 118
K +L + + P T+ TLA + N P G Q
Sbjct: 76 NKAKARLILTGKTSKQPFIIHDMETFQLAEKTLAAHMVNGDNQEPESGLQAGELVPAVGC 135
Query: 119 -ELLQDFSE-RF--------SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
EL Q +E R T+ ++ EFAK +PGF L +DQVTLLK GV+E L
Sbjct: 136 GELQQREAEARLFHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTL 195
Query: 169 LA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLF 225
LA CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF
Sbjct: 196 LASCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALF 253
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++ R GL + LVE+++ + +L L NHP+ L L+ L DLR L
Sbjct: 254 VAAIICCGDRPGLVDVPLVEQLQESIVQVLRLHLLANHPDDTFLFPRLLQKLADLRELVT 313
Query: 286 LHSEKLVAFQMTE 298
H++ + + TE
Sbjct: 314 EHAQLVQEIKTTE 326
>gi|440908154|gb|ELR58206.1| Retinoic acid receptor beta, partial [Bos grunniens mutus]
Length = 303
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 72 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 131
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 132 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETGLLSAICLICGDRQDLE 191
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 192 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 248
>gi|112181202|ref|NP_035374.3| retinoic acid receptor gamma isoform 1 [Mus musculus]
gi|166899090|sp|P18911.3|RARG_MOUSE RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|53909|emb|CAA33845.1| Retinoic acid receptor gamma [Mus musculus]
gi|15277832|gb|AAH12923.1| Retinoic acid receptor, gamma [Mus musculus]
gi|148672049|gb|EDL03996.1| retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|226404|prf||1510302C retinoic acid receptor gamma
Length = 458
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|223018255|gb|ACM78031.1| peroxisome proliferator activated receptor alpha b
[Ctenopharyngodon idella]
Length = 467
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 22/293 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK R+ A + T + E +L D++ + + A++
Sbjct: 167 HNA-IRFGRMPQSEKLRLKAEIL--TGEREVEDP---QLADQKTLAKQIYEAYMKNFNMN 220
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L P T T + +S L + ++ F
Sbjct: 221 KCKARTILTGKTSTPPFVIHDMETLQLAEQTFVAKMVGSSGGLLNKDAEVRIFHCCQCTS 280
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGEV 187
T+ ++ EFAK +PGFS L +DQVTLLK GV E L LA CM ++ ++
Sbjct: 281 VETVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCM--NKDGLLVAYGSGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRRPFSEMMEPKFQFAMKFNSLELDDSDLALFVAAIICCGDRPGLVNVPHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
RM+ + N+L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 399 RMQENIVNVLHLHLKSNHPDHGFLFPKLLQKLVDLRQLVTEHAQLVQEIKKTE 451
>gi|291231368|ref|XP_002735636.1| PREDICTED: nuclear receptor-like [Saccoglossus kowalevskii]
Length = 490
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL--NG 185
F+ I VV FAKR+PGF L DD++ + K G FEV+ VRL+ + + TN M N
Sbjct: 305 FTHLIEGVVTFAKRLPGFRQLDLDDRMVITKLGCFEVVTVRLSMLHNLYTNEMEVFAENY 364
Query: 186 EVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ + + + F++ ++FDF R+N L L+D+E L S+++++S R GL K+LV
Sbjct: 365 SMSIEHAKMTPMGDFVI-AIFDFCVRINSLCLTDSEKSLLSAVILMSADRPGLNEKQLVA 423
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
++ L + L +NHPE +L ++++ +LP LR +N HS++L+ +++
Sbjct: 424 SLQDSYLRALQYELRRNHPEDDSLLSQVLLLLPKLREINCEHSKRLMEMKVS 475
>gi|395541032|ref|XP_003772452.1| PREDICTED: retinoic acid receptor gamma [Sarcophilus harrisii]
Length = 463
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 223 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 282
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 283 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 342
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 343 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 402
Query: 292 VAFQM 296
+ +M
Sbjct: 403 ITLKM 407
>gi|15489203|gb|AAH13709.1| Retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|345791750|ref|XP_858281.2| PREDICTED: retinoic acid receptor gamma isoform 4 [Canis lupus
familiaris]
Length = 447
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|350583983|ref|XP_001924421.3| PREDICTED: retinoic acid receptor gamma [Sus scrofa]
Length = 447
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|18031837|gb|AAL02362.1| retinoic acid receptor gamma-2 [Mesocricetus auratus]
Length = 443
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|387861488|gb|AFK08624.1| peroxisome proliferator-activated receptor alpha [Scophthalmus
maximus]
Length = 474
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 51/317 (16%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELD-----DEQRMLSTVVRAHLD 74
HNA +RFGR+P+ EK ++ K K + AE++ D + ++ + A++
Sbjct: 155 HNA-IRFGRMPQAEKLKL----------KAESKMVEAEVESPMLADHKVLVRQIHEAYMK 203
Query: 75 TCAFTADKIEPMLRRAREHP--------TYTACPSTLACPLNPNSHP-----LQ------ 115
K +L +P T+ TL + +P LQ
Sbjct: 204 NFTMNKAKARLILTGKTSNPPFIIHDMETFQLAERTLVAHMLNGDYPEPESGLQSGPDVL 263
Query: 116 --GQQELLQDFSE---------RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
G EL Q +E T+ ++ EFAK +PGF L +DQVTLLK GV+E
Sbjct: 264 GVGCGELQQREAEARLFHCCQSTSVETVTELTEFAKAVPGFQGLDLNDQVTLLKYGVYEA 323
Query: 165 LLVRLA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTE 221
+ LA CM ++ ++ G + R+ + S F +M+ F FA R N L L D++
Sbjct: 324 IFTLLASCM--NKDGLLVARGGGFITREFLKSLRRPFSEMMEPKFQFATRFNSLELDDSD 381
Query: 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
+ LF + ++ R GL + LVE+++ + L H L NHP+ L L+ L DLR
Sbjct: 382 LALFVAAIICCGDRPGLVDVPLVEQLQEGIVQALQHHLLANHPDNTFLFPRLLQKLADLR 441
Query: 282 TLNQLHSEKLVAFQMTE 298
L H++ + + TE
Sbjct: 442 ELVTEHAQLVQDIKTTE 458
>gi|118175891|gb|ABK76300.1| peroxisome proliferator-activated receptor alpha [Rachycentron
canadum]
gi|157418571|gb|ABV55019.1| peroxisome proliferator-activated receptor alpha [Rachycentron
canadum]
Length = 476
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 46/315 (14%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAA-ELDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A +K EK + + L + + ++ + A++ +
Sbjct: 156 HNA-IRFGRMPQAEKLKLKA------ESKMVEKQVESPMLANHKTLVRQIHEAYMKNFSM 208
Query: 79 TADKIEPMLRRAREHP---------TYTACPSTLACPLNPNSHP---------------- 113
K +L P T+ TLA + + P
Sbjct: 209 NKTKARLILTGKTSKPQPLIIHDMDTFQIAERTLAVHMVNDDDPELDGGIQAGDVVPGVG 268
Query: 114 ------LQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLV 167
++ + L T+ ++ EFAK +PGF L +DQVTLLK GV+E L
Sbjct: 269 CGELQQIEAEARLFHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFT 328
Query: 168 RLA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGL 224
LA CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ L
Sbjct: 329 LLASCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLAL 386
Query: 225 FSSIVVISPSRSGLRNKELVERMR-GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
F + ++ R GL + LVE+++ G ++ + +H+L NHP+ L L+ L DLR L
Sbjct: 387 FVAAIICCGDRPGLVDVHLVEQLQEGIVQALRLHLL-ANHPDNTFLFPRLLQKLADLREL 445
Query: 284 NQLHSEKLVAFQMTE 298
H++ + + TE
Sbjct: 446 VTEHAQLVQEIKTTE 460
>gi|410964523|ref|XP_003988803.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Felis catus]
Length = 447
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|385843192|gb|AFI80893.1| PPARalpha, partial [Oncorhynchus nerka]
Length = 452
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 135/294 (45%), Gaps = 23/294 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A + T + E A D++ + + A+L
Sbjct: 163 HNA-IRFGRMPQSEKLKLKAEIL--TGDREVEDPQQA---DQKTLARHIYEAYLKNFNMN 216
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPL--NPNSHPLQGQQE--LLQDFSER 127
K +L P T TL + H L+ + E +
Sbjct: 217 KAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGTAGGHLLEKEAEVRIFHCCQCT 276
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGE 186
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA CM ++ ++
Sbjct: 277 SVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFALLASCM--NKDGLLVAYGSG 334
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S F +M+ F FA + NGL L D+++ LF + ++ R GL N +
Sbjct: 335 FITREFLKSLRRPFSDMMEPKFQFAMKFNGLELDDSDLALFVAAIICCGDRPGLVNVTHI 394
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
E M+ + +L L NHP+ L L+ L DLR L H++ + + TE
Sbjct: 395 ECMQENIVQVLQLHLLANHPDDTFLFPNLLQKLADLRQLVTEHAQLVQEIKKTE 448
>gi|345791748|ref|XP_849260.2| PREDICTED: retinoic acid receptor gamma isoform 2 [Canis lupus
familiaris]
Length = 458
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|410964521|ref|XP_003988802.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Felis catus]
Length = 459
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 219 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 278
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 279 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 338
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 339 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 398
Query: 292 VAFQM 296
+ +M
Sbjct: 399 ITLKM 403
>gi|308387346|ref|NP_001184140.1| peroxisome proliferator-activated receptor alpha [Oncorhynchus
mykiss]
gi|307751334|gb|ADN92684.1| peroxisome proliferator-activated receptor alpha [Oncorhynchus
mykiss]
Length = 464
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 135/294 (45%), Gaps = 23/294 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++ A + T + E A D++ + + A+L
Sbjct: 163 HNA-IRFGRMPQSEKLKLKAEIL--TGDREVEDPQQA---DQKTLARHIYEAYLKNFNMN 216
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLACPL--NPNSHPLQGQQE--LLQDFSER 127
K +L P T TL + H L+ + E +
Sbjct: 217 KAKARTILTGKTSTPPFVIHDMETLQLAEQTLVAKMVGTAGGHLLEKEAEVRIFHCCQCT 276
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGE 186
T+ ++ EFAK +PGFS L +DQVTLLK GV+E L LA CM ++ ++
Sbjct: 277 SVETVTELTEFAKSVPGFSSLDLNDQVTLLKYGVYEALFALLASCM--NKDGLLVAYGSG 334
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S F +M+ F FA + NGL L D+++ LF + ++ R GL N +
Sbjct: 335 FITREFLKSLRRPFSDMMEPKFQFAMKFNGLELDDSDLALFVAAIICCGDRPGLVNVTHI 394
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
E M+ + +L L NHP+ L L+ L DLR L H++ + + TE
Sbjct: 395 ECMQENIVQVLQLHLLANHPDDTFLFPNLLQKLADLRQLVTEHAQLVQEIKKTE 448
>gi|297262493|ref|XP_002798647.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Macaca mulatta]
gi|402886146|ref|XP_003906499.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Papio anubis]
Length = 443
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|149714814|ref|XP_001504548.1| PREDICTED: retinoic acid receptor gamma-like isoform 2 [Equus
caballus]
Length = 447
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPTQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|432112583|gb|ELK35299.1| Retinoic acid receptor gamma [Myotis davidii]
Length = 447
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|221041986|dbj|BAH12670.1| unnamed protein product [Homo sapiens]
Length = 443
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|198282033|ref|NP_571542.1| peroxisome proliferator-activated receptor gamma [Danio rerio]
gi|113037610|gb|ABI30002.1| peroxisome proliferator activated receptor gamma [Danio rerio]
Length = 527
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 143/297 (48%), Gaps = 15/297 (5%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA N E +ALA L + + T +A
Sbjct: 221 HNA-IRFGRMPQAEKEKLLAEFSSDVNHMHPESADLRALARHLYESYLKYFPLTKAKARA 279
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQG-----QQELLQDFSERF 128
T+D ++ + + PL+ + G + + R
Sbjct: 280 ILSGKTSDNAPFVIHDMKSLVEGEQMINCRYMPLHEHRRSDLGIMHEVELRFFHSYQSRS 339
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
+ I +V EFAK IPGF L +DQVTLLK GV EV+++ ++ + + + ++I +
Sbjct: 340 AEAISEVTEFAKSIPGFINLDLNDQVTLLKYGVIEVMIIMISPLMN-KDGTLISYGQIFM 398
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F +M+ F+F+ + N L L D ++ LF +++++S R GL + + +E
Sbjct: 399 TREFLKSLRKPFCEMMEPKFEFSIKFNMLELDDCDMALFLAVIILSGDRPGLLDVKPIED 458
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ + + L L NHP+ + L A+++ + DLR L H + + + TE L
Sbjct: 459 LQETVLHSLELQLKINHPDSLQLFAKVLQKMTDLRQLVTDHVQLIQMMKETEADWSL 515
>gi|112181200|ref|NP_001036193.1| retinoic acid receptor gamma isoform 2 [Homo sapiens]
gi|332839266|ref|XP_003313717.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan troglodytes]
gi|397522009|ref|XP_003831073.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Pan paniscus]
gi|403296780|ref|XP_003939273.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Saimiri
boliviensis boliviensis]
gi|119617082|gb|EAW96676.1| retinoic acid receptor, gamma, isoform CRA_a [Homo sapiens]
gi|221045906|dbj|BAH14630.1| unnamed protein product [Homo sapiens]
gi|325495469|gb|ADZ17340.1| retinoic acid nuclear receptor gamma variant 2 [Homo sapiens]
gi|410226728|gb|JAA10583.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260686|gb|JAA18309.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300280|gb|JAA28740.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352701|gb|JAA42954.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 443
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|134270863|gb|ABO69006.1| peroxisome proliferator-activated receptor alpha [Dentex dentex]
Length = 477
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 43/313 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAA-ELDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ A K EK +A L D + ++ + A++ +
Sbjct: 158 HNA-IRFGRMPQAEKLKLKA------ERKVVEKEVAGPMLADHKILVREIHGAYVKNFSM 210
Query: 79 TADKIEPMLRRAREHP--------TYTACPSTLACPL----NPNSH---------PLQGQ 117
K +L P T+ TL+ + NP P G
Sbjct: 211 NKAKARLILTGKTSKPPFIIHDMETFQLAERTLSAHMVNSDNPEPESGIQAGELVPAVGC 270
Query: 118 QELLQDFSE---------RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
EL Q +E T+ ++ EFAK +PGF L +DQVTLLK GV+E L
Sbjct: 271 GELQQREAEARVLHCCQSTSVETVTELTEFAKAVPGFQSLDLNDQVTLLKYGVYEALFTV 330
Query: 169 LA-CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLF 225
LA CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF
Sbjct: 331 LASCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALF 388
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++ R G+ + LVE+++ + +L L NHPE L L+ L DLR L
Sbjct: 389 VAAIISCGDRPGMVDVPLVEQLQESIVQVLRVHLVANHPEDNFLFPRLMQKLADLRELVT 448
Query: 286 LHSEKLVAFQMTE 298
H++ + + TE
Sbjct: 449 EHAQLVQEIKTTE 461
>gi|296211800|ref|XP_002752563.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Callithrix
jacchus]
Length = 443
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|198427353|ref|XP_002120859.1| PREDICTED: nuclear receptor [Ciona intestinalis]
Length = 818
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
F+E ++ VVEF K++PGF + +DQ+ LLKA EV+L+R A +D ++ ++ L
Sbjct: 630 FTELAILIVQLVVEFTKQLPGFLTVSREDQILLLKACTIEVMLLRAAKQYDKKSKAINFL 689
Query: 184 NGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
NG+ + S + + + +D +FDF + L L++ E L +I S R +++
Sbjct: 690 NGKFYDKSSFYRAGMQVEFVDPIFDFCNSMAQLGLNEAEYALLVAINTFSADRPNIKDMH 749
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
VE ++ +L L +HP + + L +LRTLN HSE++ A ++ ++Q
Sbjct: 750 KVEAVQNSYVELLRVYLKIHHPSDPLMFPRTLMKLVELRTLNNYHSEQIFALKVQDKQ 807
>gi|33386560|emb|CAD62449.1| peroxisome proliferator-activated receptor gamma [Pleuronectes
platessa]
Length = 532
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
Q R + +R+V EFAK IPGF+ L +DQVTLLK GV EVL++ ++ + + + +
Sbjct: 336 FFQSCQSRSAEAVREVTEFAKSIPGFTDLDLNDQVTLLKYGVIEVLIIMMSPLMN-KDGT 394
Query: 180 MICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+I + R+ + S F +M+ F+F+ + N L L D+++ LF ++++S R G
Sbjct: 395 LISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLVVIILSGDRPG 454
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L N + +E+++ + + L L NHP+ + L A+L+ + DLR + H + + T
Sbjct: 455 LLNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKT 514
Query: 298 E 298
E
Sbjct: 515 E 515
>gi|61363224|gb|AAX42356.1| retinoic acid receptor gamma [synthetic construct]
Length = 454
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|4506423|ref|NP_000957.1| retinoic acid receptor gamma isoform 1 [Homo sapiens]
gi|297262495|ref|XP_001087992.2| PREDICTED: retinoic acid receptor gamma isoform 1 [Macaca mulatta]
gi|332839268|ref|XP_509094.3| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan troglodytes]
gi|397522007|ref|XP_003831072.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan paniscus]
gi|402886144|ref|XP_003906498.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Papio anubis]
gi|133498|sp|P13631.1|RARG_HUMAN RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|190868|gb|AAA63254.1| retinoic acid receptor-gamma [Homo sapiens]
gi|190872|gb|AAA60254.1| retinoic acid receptor-gamma-1 [Homo sapiens]
gi|306887|gb|AAA52692.1| retinoic acid receptor gamma [Homo sapiens]
gi|60820075|gb|AAX36522.1| retinoic acid receptor gamma [synthetic construct]
gi|61363715|gb|AAX42433.1| retinoic acid receptor gamma [synthetic construct]
gi|62739477|gb|AAH93729.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|62739943|gb|AAH93727.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|119617083|gb|EAW96677.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|119617084|gb|EAW96678.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|158254608|dbj|BAF83277.1| unnamed protein product [Homo sapiens]
gi|216409686|dbj|BAH02280.1| retinoic acid receptor gamma [Homo sapiens]
gi|261858290|dbj|BAI45667.1| retinoic acid receptor, gamma [synthetic construct]
gi|325495467|gb|ADZ17339.1| retinoic acid nuclear receptor gamma variant 1 [Homo sapiens]
gi|355564276|gb|EHH20776.1| Retinoic acid receptor gamma [Macaca mulatta]
gi|355786135|gb|EHH66318.1| Retinoic acid receptor gamma [Macaca fascicularis]
gi|410226724|gb|JAA10581.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260688|gb|JAA18310.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300276|gb|JAA28738.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352705|gb|JAA42956.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|426372715|ref|XP_004053263.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 454
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|348534186|ref|XP_003454584.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 1 [Oreochromis niloticus]
Length = 537
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
Q R + +R+V EFAK IPGF L +DQVTLLK GV EVL++ ++ + + + +
Sbjct: 341 FFQSCQSRSAEAVREVTEFAKSIPGFVDLDLNDQVTLLKYGVIEVLIIMMSPLMN-KDGT 399
Query: 180 MICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+I + R+ + S F +M+ F+F+ + N L L D+++ LF +++++S R G
Sbjct: 400 LISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAVIILSGDRPG 459
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L N + +E+++ + + L L NHP+ + L A+L+ + DLR + H + + T
Sbjct: 460 LLNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKT 519
Query: 298 E 298
E
Sbjct: 520 E 520
>gi|345782792|ref|XP_540323.3| PREDICTED: nuclear receptor ROR-gamma [Canis lupus familiaris]
Length = 500
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 129/252 (51%), Gaps = 33/252 (13%)
Query: 52 KALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACP 106
+A A L + + ++ V +++ +TC ++E +LR+ +RE
Sbjct: 243 EASYASLMETEHLVQNVCKSYRETCQL---RLEDLLRQRPNIFSREEVA----------- 288
Query: 107 LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
S+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+L
Sbjct: 289 ----SYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVL 344
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFS 226
VR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++
Sbjct: 345 VRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSSLRFSEDEIALYT 403
Query: 227 SIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTL 283
++V+I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L
Sbjct: 404 ALVLINANRPGLQEKRKVEQLQHNLEQAFHHHLYRTHRQG------ILAKLPPKGKLRSL 457
Query: 284 NQLHSEKLVAFQ 295
H EKL FQ
Sbjct: 458 CSQHVEKLHTFQ 469
>gi|403296782|ref|XP_003939274.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 454
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|348534188|ref|XP_003454585.1| PREDICTED: peroxisome proliferator-activated receptor gamma-like
isoform 2 [Oreochromis niloticus]
Length = 524
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
Q R + +R+V EFAK IPGF L +DQVTLLK GV EVL++ ++ + + + +
Sbjct: 328 FFQSCQSRSAEAVREVTEFAKSIPGFVDLDLNDQVTLLKYGVIEVLIIMMSPLMN-KDGT 386
Query: 180 MICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+I + R+ + S F +M+ F+F+ + N L L D+++ LF +++++S R G
Sbjct: 387 LISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAVIILSGDRPG 446
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L N + +E+++ + + L L NHP+ + L A+L+ + DLR + H + + T
Sbjct: 447 LLNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKT 506
Query: 298 E 298
E
Sbjct: 507 E 507
>gi|45383107|ref|NP_989867.1| retinoic acid receptor alpha [Gallus gallus]
gi|17367590|sp|Q90966.1|RARA_CHICK RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|1089844|emb|CAA52152.1| retinoic acid receptor alpha 1 isoform [Gallus gallus]
Length = 460
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|326679971|ref|XP_003201422.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like,
partial [Danio rerio]
Length = 407
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 137/291 (47%), Gaps = 22/291 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAM---------QQSTNTKCTEKALAAELDDEQRMLSTVVR 70
HNA +RFGR+P+ EK R+ A + Q T K +A + + T++
Sbjct: 111 HNA-IRFGRMPQSEKLRLKAEILTGERDVEDDQKTLAKQIYEAYVKNFNMNKSKARTILT 169
Query: 71 AHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
T F +E L+ A + T+ A +C N P + +
Sbjct: 170 GKTSTPPFVIHDMET-LQLAEQ--TFVA-KMMGSCGGLLNKDP---EVRIFHCCQCTSVE 222
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGEVLV 189
T+ ++ EFAK +PGFS L +DQVTLLK GV E L LA CM ++ ++ +
Sbjct: 223 TVTELTEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCM--NKDGLLVAYGSGFIT 280
Query: 190 RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N +ERM
Sbjct: 281 REFLKSLRRPFSDMMEPKFQFAMKFNSLELDDSDLALFVAAIICCGDRPGLVNVPHIERM 340
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ + N+L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 341 QESIVNVLHLHLKSNHPDHGFLFPKLLQKLVDLRQLVTEHAQLIQEIKKTE 391
>gi|60654205|gb|AAX29795.1| retinoic acid receptor gamma [synthetic construct]
gi|60654353|gb|AAX29867.1| retinoic acid receptor gamma [synthetic construct]
Length = 455
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|410964525|ref|XP_003988804.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Felis catus]
Length = 337
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 97 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 156
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 157 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 216
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 217 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 276
Query: 292 VAFQM 296
+ +M
Sbjct: 277 ITLKM 281
>gi|27901437|emb|CAB51618.2| peroxisome proliferator-activated receptor gamma [Pleuronectes
platessa]
Length = 532
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
Q R + +R+V EFAK IPGF+ L +DQVTLLK GV EVL++ ++ + + + +
Sbjct: 336 FFQSCQSRSAEAVREVTEFAKSIPGFTDLDLNDQVTLLKYGVIEVLIIMMSPLMN-KDGT 394
Query: 180 MICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+I + R+ + S F +M+ F+F+ + N L L D+++ LF ++++S R G
Sbjct: 395 LISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLVVIILSGDRPG 454
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L N + +E+++ + + L L NHP+ + L A+L+ + DLR + H + + T
Sbjct: 455 LLNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKT 514
Query: 298 E 298
E
Sbjct: 515 E 515
>gi|296211802|ref|XP_002752564.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Callithrix
jacchus]
Length = 454
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|149714811|ref|XP_001504545.1| PREDICTED: retinoic acid receptor gamma-like isoform 1 [Equus
caballus]
Length = 458
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPTQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|195539517|ref|NP_001124228.1| retinoic acid receptor gamma [Bos taurus]
gi|158455128|gb|AAI23810.2| RARG protein [Bos taurus]
gi|296487919|tpg|DAA30032.1| TPA: retinoic acid receptor, gamma [Bos taurus]
Length = 458
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|328699242|ref|XP_003240875.1| PREDICTED: probable nuclear hormone receptor HR3-like
[Acyrthosiphon pisum]
Length = 807
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 126/274 (45%), Gaps = 30/274 (10%)
Query: 67 TVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSE 126
T+ AH TC +T D+I + R T T + A + +EL + ++
Sbjct: 540 TIADAHARTCFYTLDQIHDGMYR-----TATMAAANKATADKLIMYKTMPHEELWLECAQ 594
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
+ + I+ ++EFAK +PGF L DDQ+ LLKAG FE+ ++R++ +D + + +
Sbjct: 595 KLTSVIQQIIEFAKMVPGFMKLSQDDQIVLLKAGSFELAVLRMSRHYDLHRDCVYYADA- 653
Query: 187 VLVRDSIHSSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+L D+ ++ + + L+ F+ + + L L++TE+ L+S++V++SP R GL+ +
Sbjct: 654 LLPADAFYTQDTVEKKLVSLAFEVSRSVASLKLTETELALYSAVVLLSPDRQGLKGTVEI 713
Query: 245 ERMRGKLENMLMHVLNQNHPEQMN----------------------LCAELISMLPDLRT 282
R+R + L L+ N +C LI +P LR
Sbjct: 714 GRLRQAILRALRMELDHRTAGGKNATTVDLQHQQQHHQQQQQQQNQVCDALIQKIPILRQ 773
Query: 283 LNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNS 316
L LH E L + T + A ++ D S
Sbjct: 774 LGMLHMEALAKLRRTVPHLEFPALHKELFSVDGS 807
>gi|426224398|ref|XP_004006358.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor gamma [Ovis
aries]
Length = 458
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|426256482|ref|XP_004021869.1| PREDICTED: retinoic acid receptor beta isoform 3 [Ovis aries]
Length = 336
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETGLLSAICLICGDRQDLE 224
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 225 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
>gi|16565492|gb|AAL26245.1| peroxisome proliferator-activated receptor [Petromyzon marinus]
Length = 436
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 3/179 (1%)
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R +R+V EFAK IPGF +L +DQVTLLK GV+EV+ LA + + +I
Sbjct: 247 RLVEAVREVTEFAKSIPGFMILDLNDQVTLLKYGVYEVIFAMLAAQIN-KDGLLIAYGSA 305
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S + F +M+ F+F+ R N L L T++ L+ + +++ R GL N V
Sbjct: 306 FITREFLRSLRSPFCHIMEPKFEFSIRFNALSLDGTDLALYMAAIILCGDRPGLINVNPV 365
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
ER++ ++ L L + HPE L +L+ L DLR L H++ + + TE L
Sbjct: 366 ERIQDRILQALDLQLRKTHPESPFLFPKLLQKLSDLRQLVTEHAQMVHNIRKTEADTAL 424
>gi|327283540|ref|XP_003226499.1| PREDICTED: retinoic acid receptor beta-like [Anolis carolinensis]
Length = 449
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ ++
Sbjct: 337 EPAKVDELQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKL 393
>gi|432865288|ref|XP_004070509.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 510
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 214 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 273
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 274 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 333
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 334 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 393
Query: 292 VAFQM 296
+ +M
Sbjct: 394 ITLKM 398
>gi|70570127|dbj|BAE06541.1| nuclear receptor [Ciona intestinalis]
Length = 557
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
F+E ++ VVEF K++PGF + +DQ+ LLKA EV+L+R A +D ++ ++ L
Sbjct: 369 FTELAILIVQLVVEFTKQLPGFLTVSREDQILLLKACTIEVMLLRAAKQYDKKSKAINFL 428
Query: 184 NGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
NG+ + S + + + +D +FDF + L L++ E L +I S R +++
Sbjct: 429 NGKFYDKSSFYRAGMQVEFVDPIFDFCNSMAQLGLNEAEYALLVAINTFSADRPNIKDMH 488
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
VE ++ +L L +HP + + L +LRTLN HSE++ A ++ ++Q
Sbjct: 489 KVEAVQNSYVELLRVYLKIHHPSDPLMFPRTLMKLVELRTLNNYHSEQIFALKVQDKQ 546
>gi|355715385|gb|AES05310.1| retinoic acid receptor, gamma [Mustela putorius furo]
Length = 243
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 3 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 62
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 63 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 122
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 123 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 182
Query: 292 VAFQM 296
+ +M
Sbjct: 183 ITLKM 187
>gi|301775773|ref|XP_002923322.1| PREDICTED: retinoic acid receptor gamma-like [Ailuropoda
melanoleuca]
Length = 458
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPGQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|356892262|gb|AET41699.1| peroxisome proliferator-activated receptor gamma [Bubalus bubalis]
Length = 449
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 144/307 (46%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 149 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 201
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACP--------LNPNSHP-LQGQQELLQDFSERF 128
K +L + + P ++L ++P P + + Q R
Sbjct: 202 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPMQEPSKEVAIRIFQGCQFRS 261
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV ++ LA + + + +I +
Sbjct: 262 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHGIIYTMLASLMN-KDGVLISEGQGFM 320
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 321 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 380
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 381 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 440
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 441 LQEIYKD 447
>gi|432865286|ref|XP_004070508.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 502
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 206 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 265
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 266 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 326 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 385
Query: 292 VAFQM 296
+ +M
Sbjct: 386 ITLKM 390
>gi|344030237|ref|NP_001230660.1| retinoic acid receptor gamma isoform 5 [Homo sapiens]
gi|397522015|ref|XP_003831076.1| PREDICTED: retinoic acid receptor gamma isoform 5 [Pan paniscus]
gi|410046633|ref|XP_003952231.1| PREDICTED: retinoic acid receptor gamma [Pan troglodytes]
gi|441632152|ref|XP_003252496.2| PREDICTED: retinoic acid receptor gamma [Nomascus leucogenys]
Length = 333
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 97 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 156
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 157 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 216
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 217 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 276
Query: 292 VAFQM 296
+ +M
Sbjct: 277 ITLKM 281
>gi|237688379|gb|ACR15148.1| thyroid hormone receptor [Branchiostoma belcheri tsingtauense]
Length = 429
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
+E +P I VVEFAK+IPGF+ L DDQV LLK FEV+ +R A FD Q ++
Sbjct: 233 LAEVITPAIIKVVEFAKQIPGFTKLVPDDQVALLKNCCFEVMCLRAASRFDKQRRTITMF 292
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
G + ++ + L + F+FAE L+ LHL DTE+ L + +++ R G++++E
Sbjct: 293 GGLTVTKEQVSLGGLGRLAEPPFEFAEGLSQLHLDDTEVAL-LAALLVVADRPGVQDQES 351
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE--KLVAFQMT 297
++R++ + + + + P Q L +++ + DLR L+ H+E KLV + T
Sbjct: 352 IDRLQDIILTAYKNYITRQRPHQPVLWGKILMKVTDLRALSVAHAEQVKLVKMECT 407
>gi|86355089|dbj|BAE78779.1| retinoic acid receptor gamma [Pelodiscus sinensis]
Length = 309
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 75 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLSIADQITLLKAACLDILMLRICT 134
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 135 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 194
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 195 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 254
Query: 292 VAFQM 296
+ +M
Sbjct: 255 ITLKM 259
>gi|133488|sp|P18514.1|RARA_NOTVI RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|64126|emb|CAA35602.1| retinoic acid receptor alpha [Notophthalmus viridescens]
gi|226520|prf||1516344A retinoic acid receptor alpha
Length = 458
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|426256478|ref|XP_004021867.1| PREDICTED: retinoic acid receptor beta isoform 1 [Ovis aries]
Length = 448
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 98/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 217 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 276
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 277 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETGLLSAICLICGDRQDLE 336
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>gi|432859602|ref|XP_004069175.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 485
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 206 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 265
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 266 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 326 CGDRMDLEEPEKVDKLQEPLLEALKIYTRRRRPNKPHMFPRMLMKVTDLRGISTKGAERA 385
Query: 292 VAFQM 296
+ +M
Sbjct: 386 ITLKM 390
>gi|432859604|ref|XP_004069176.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 493
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 214 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 273
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 274 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 333
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 334 CGDRMDLEEPEKVDKLQEPLLEALKIYTRRRRPNKPHMFPRMLMKVTDLRGISTKGAERA 393
Query: 292 VAFQM 296
+ +M
Sbjct: 394 ITLKM 398
>gi|301767868|ref|XP_002919364.1| PREDICTED: nuclear receptor ROR-gamma-like [Ailuropoda melanoleuca]
Length = 529
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 326 EMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 384
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 385 HTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSSLRFSEDEIALYTALVLINANRPGL 444
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H EKL FQ
Sbjct: 445 QEKRKVEQLQHNLELAFHHHLYKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQTFQ 498
>gi|281341825|gb|EFB17409.1| hypothetical protein PANDA_012436 [Ailuropoda melanoleuca]
Length = 449
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPGQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|355717080|gb|AES05816.1| RAR-related orphan receptor C [Mustela putorius furo]
Length = 414
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L + + ++ V +++ +TC ++E +LR+ +RE
Sbjct: 162 ASLTETEHLVQNVCKSYRETCQL---RLEDLLRQRPNIFSREEVA--------------- 203
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+
Sbjct: 204 GYQTKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM- 262
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 263 CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSSLRFSEDEIALYTALVL 322
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE+++ LE H L + H + +++ LP LR+L H
Sbjct: 323 INANRPGLQEKRKVEQLQHNLELAFHHHLYKTHRQG------ILAKLPPKGKLRSLCSQH 376
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 377 VEKLQTFQ 384
>gi|350537461|ref|NP_001233277.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
gi|315466297|emb|CBY83981.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
Length = 502
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 214 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 273
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +IS R L
Sbjct: 274 MTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAISLISGDRMDLE 333
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + P + ++ ++ + DLR ++ +E+ + +M
Sbjct: 334 EPQKVDKLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKM 390
>gi|381413307|gb|AFG28651.1| molt-regulating transcription factor, partial [Chilo infuscatellus]
Length = 418
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 209 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLSQDDQILLLKSGSFELAIVRLSRLID--I 266
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
N L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 267 NREQVLYGDVVLPIRECVHARDPRDMALVVGIFDAAKTIARLKLTETELALYQSLVLLWP 326
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R ++ + + H NH + + L++ +P R L+ +H E
Sbjct: 327 ERHGVRGNPEIQCLFNMSMAAMRHEAELNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEA 386
Query: 291 LVAFQ 295
L F+
Sbjct: 387 LCRFK 391
>gi|327275485|ref|XP_003222504.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 1 [Anolis
carolinensis]
Length = 461
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDRVDKLQEPLLEALKIYVRKRRPSKPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|348562379|ref|XP_003466988.1| PREDICTED: retinoic acid receptor alpha-like isoform 2 [Cavia
porcellus]
Length = 462
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPERVDLLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|221041602|dbj|BAH12478.1| unnamed protein product [Homo sapiens]
Length = 382
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 146 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 205
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 206 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 265
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 266 CGDRVDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 325
Query: 292 VAFQM 296
+ +M
Sbjct: 326 ITLKM 330
>gi|6433866|emb|CAB60726.1| retinoic acid receptor [Homo sapiens]
Length = 381
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 145 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFAGLSIADQITLLKAACLDILMLRICT 204
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 205 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 264
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 265 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 324
Query: 292 VAFQM 296
+ +M
Sbjct: 325 ITLKM 329
>gi|410911346|ref|XP_003969151.1| PREDICTED: thyroid hormone receptor beta-like [Takifugu rubripes]
Length = 395
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 201 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 260
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L D+E+ L +I+++S RSG
Sbjct: 261 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSAFNLDDSEVALLQAIILLSSDRSG 319
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L N E +ER + + H +N + + A+L+ + DLR + H+ + +
Sbjct: 320 LSNVEQIERYQEEFLLAFEHYINYRKHKVPHFWAKLLMKVTDLRMIGACHASRFL 374
>gi|417400991|gb|JAA47402.1| Putative peroxisome proliferator-activated receptor delta [Desmodus
rotundus]
Length = 441
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 22/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S ++ L ++ D + + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTASEGSQ-----LNPQVADLKAFSKHIYSAYLKNFNMT 193
Query: 80 ADKIEPMLRRAREHP---------TYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
K +L H T L N P + + + + +
Sbjct: 194 KKKARGILTGKTSHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT 253
Query: 131 --TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP F L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 254 VETVRELTEFAKSIPSFGNLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGTGF 311
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 312 VTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVSQVE 371
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ + L L+ NHP+ L +L+ + DLR L H++ + + TE + L
Sbjct: 372 AIQDTILRALEFHLHANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSL 429
>gi|426372717|ref|XP_004053264.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Gorilla gorilla
gorilla]
Length = 382
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 146 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 205
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 206 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 265
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 266 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 325
Query: 292 VAFQM 296
+ +M
Sbjct: 326 ITLKM 330
>gi|158702320|gb|ABW77511.1| retinoic acid receptor gamma a [Salmo salar]
Length = 504
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 214 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 273
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +IS R L
Sbjct: 274 MTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAISLISGDRMDLE 333
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + P + ++ ++ + DLR ++ +E+ + +M
Sbjct: 334 EPQKVDKLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKM 390
>gi|338726282|ref|XP_003365289.1| PREDICTED: retinoic acid receptor gamma-like [Equus caballus]
Length = 386
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 146 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 205
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 206 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 265
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 266 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPTQPYMFPRMLMKITDLRGISTKGAERA 325
Query: 292 VAFQM 296
+ +M
Sbjct: 326 ITLKM 330
>gi|151327627|gb|ABS00248.1| ecdysone receptor A isoform [Omphisa fuscidentalis]
Length = 514
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEFAK +PGFS + DQ+TLLKA EV+++R+A +D+ ++S++ N + R
Sbjct: 314 TVQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTR 373
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM-RG 249
D+ + ++++ + F + + + + L +++V+ S R GL +LVE + R
Sbjct: 374 DNYRKAGMAYVIEDLLHFCRCMYSMSMDNVHYALLTAVVIFS-DRPGLEQPQLVEEIQRY 432
Query: 250 KLENMLMHVLNQN--HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
L + M+++NQ+ P L A+++S+L +LRTL +S ++ ++ ++
Sbjct: 433 YLNTLRMYIMNQHSASPRCSVLYAKILSVLTELRTLGMQNSNMCISLKLKNRK 485
>gi|344030235|ref|NP_001230659.1| retinoic acid receptor gamma isoform 4 [Homo sapiens]
gi|332839270|ref|XP_003313718.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Pan troglodytes]
gi|397522011|ref|XP_003831074.1| PREDICTED: retinoic acid receptor gamma isoform 3 [Pan paniscus]
Length = 382
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 146 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 205
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 206 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 265
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 266 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 325
Query: 292 VAFQM 296
+ +M
Sbjct: 326 ITLKM 330
>gi|259013197|ref|NP_001158348.1| peroxisome proliferator-activated receptor gamma [Oryzias latipes]
gi|229619550|dbj|BAH58105.1| peroxisome proliferator-activated receptor gamma [Oryzias latipes]
Length = 531
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 149/319 (46%), Gaps = 42/319 (13%)
Query: 20 HNAPVRFGRVPKREKARILAA----MQQSTNTKCTEKALAAELDDEQRMLSTVVRAHL-- 73
HNA +RFGR+P+ EK ++LA M+ +ALA L + + +A
Sbjct: 198 HNA-IRFGRMPQAEKEKLLAEFSSDMEHMHPEAADLRALARHLYEAYLKYFPLTKAKARA 256
Query: 74 -------DTCAFTADKIEPMLR------------RAREHPTYTACPSTLACPL------- 107
D F I+ ++ + ++ T S +A L
Sbjct: 257 ILSGKSGDNVPFVIHDIKSLMEGKQLINNGQTSFQEQQIATAGHGVSGIAGALSGPDCNV 316
Query: 108 -----NPNSHPLQGQQ-ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
N S P G + R + +R+V EFAK IPGF L +DQVTLLK GV
Sbjct: 317 FGMASNIGSEPPDGVELRFFYSCQSRSAEAVREVTEFAKSIPGFVNLDLNDQVTLLKYGV 376
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSD 219
EVL++ ++ + + + ++I + R+ + S F +++ FDF+ + N L L D
Sbjct: 377 IEVLILMMSPLMN-KDGTLISYGQIFMTREFLKSLRKPFCQMLEPKFDFSVKFNTLELDD 435
Query: 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPD 279
+++ LF +++++S R GL N + +E+++ + + L L NHP+ + L A+++ + D
Sbjct: 436 SDMALFLAVIILSGDRPGLLNVKPIEQLQETVLHSLELHLKINHPDSLQLFAKVLQKMTD 495
Query: 280 LRTLNQLHSEKLVAFQMTE 298
LR + H + + + TE
Sbjct: 496 LRQMVTDHVQLIQLLKKTE 514
>gi|344286026|ref|XP_003414760.1| PREDICTED: retinoic acid receptor alpha-like isoform 3 [Loxodonta
africana]
Length = 367
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLK ++L++R+ + + +
Sbjct: 126 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKGACLDILILRICTRYTPEQD 185
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 186 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 245
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 246 EQPERVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 303
>gi|2605497|dbj|BAA23354.1| peroxisome proliferator activated-receptor gamma [Homo sapiens]
Length = 474
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 146/311 (46%), Gaps = 32/311 (10%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDEQRMLSTVVRAHLDT 75
HNA +RFGR+P+ EK ++LA + + E +ALA L D +++ +
Sbjct: 177 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYD----------SYIKS 225
Query: 76 CAFTADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDF 124
T K +L + + P ++L + PLQ Q + + Q
Sbjct: 226 FPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGC 285
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 286 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEG 344
Query: 185 GEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S GL N +
Sbjct: 345 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILS---GGLLNVK 401
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQ 302
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 402 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMS 461
Query: 303 LAAQQQQWHGE 313
L Q+ + +
Sbjct: 462 LHPLLQEIYKD 472
>gi|158257842|dbj|BAF84894.1| unnamed protein product [Homo sapiens]
Length = 462
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L L + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDRVDMLQEPLLEALKVYLRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|151327629|gb|ABS00249.1| ecdysone receptor B1 isoform [Omphisa fuscidentalis]
Length = 541
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEFAK +PGFS + DQ+TLLKA EV+++R+A +D+ ++S++ N + R
Sbjct: 341 TVQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTR 400
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM-RG 249
D+ + ++++ + F + + + + L +++V+ S R GL +LVE + R
Sbjct: 401 DNYRKAGMAYVIEDLLHFCRCMYSMSMDNVHYALLTAVVIFS-DRPGLEQPQLVEEIQRY 459
Query: 250 KLENMLMHVLNQN--HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
L + M+++NQ+ P L A+++S+L +LRTL +S ++ ++ ++
Sbjct: 460 YLNTLRMYIMNQHSASPRCSVLYAKILSVLTELRTLGMQNSNMCISLKLKNRK 512
>gi|84028529|gb|ABC49723.1| thyroid hormone receptor 2 [Petromyzon marinus]
Length = 440
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
F+ +P+I VV+FAK++P F+ L +DQ+ LLK E++ +R A +D +++++ L
Sbjct: 251 FTAIITPSITRVVDFAKKLPMFTELPCEDQIVLLKGCCMEIMSLRAAVRYDPESDTLT-L 309
Query: 184 NGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
NGEV V ++ + + + D++FD L L DTE+ L +++++S R GL N +
Sbjct: 310 NGEVAVKKEQLKNGGLGLVSDAIFDLGRSLAAFSLDDTEVALLQAVLLMSTDRPGLVNVD 369
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
VE+++ L H +N + +L+ + DLR + HS +++ ++T
Sbjct: 370 KVEKLQDTYLLALEHYINHREHRLNHFWPKLLMKVTDLRLIGACHSSRILHMKVT 424
>gi|380807331|gb|AFE75541.1| retinoic acid receptor gamma isoform 1, partial [Macaca mulatta]
Length = 382
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 147 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 206
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 207 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 266
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 267 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 326
Query: 292 VAFQM 296
+ +M
Sbjct: 327 ITLKM 331
>gi|260807675|ref|XP_002598634.1| hypothetical protein BRAFLDRAFT_67031 [Branchiostoma floridae]
gi|229283907|gb|EEN54646.1| hypothetical protein BRAFLDRAFT_67031 [Branchiostoma floridae]
Length = 581
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 29/297 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGR+PK E+ +I+ +Q ++ E +L + M+ ++VR + +TC T K+
Sbjct: 268 VRFGRMPKVEREKIILELQSKKDSVFDEAEHEIQL---KVMIDSIVRVYEETC-ITHAKM 323
Query: 84 EPMLRRARE----HPTYTA----CPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDV 135
E M ++ +E H Y L + L Q +L + I +
Sbjct: 324 EVMRKKIKENAMDHKLYDKPFPPGEGILDALFPKSGVVLSDVQRILDALQKETVRGIEAM 383
Query: 136 VEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS 195
+FAK IPGF L +DQVTLLK +EV LV +A I +G V+ +++ S
Sbjct: 384 AKFAKGIPGFLELDLNDQVTLLKYSSYEVCLV-IASRLLYDLKFYIGYSGVVVTLEAMKS 442
Query: 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS----------------RSGLR 239
+ +M+ + F + +N L L++TE+ LF SI+++S R+ L
Sbjct: 443 LSLWPIMEPKYQFWKAINVLALTETEMALFCSIIIMSSECLFVSDFQPEYMSVSDRTNLV 502
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
N++ +E ++ ++ L L +NHP A L+ L DLR L H + L F +
Sbjct: 503 NRQQIEEIQERMTEGLEFQLKRNHPSSPRHLARLLVKLADLRQLATEHIDMLKRFDV 559
>gi|290965748|gb|ADD70245.1| peroxisome proliferator activated receptor gamma [Ctenopharyngodon
idella]
gi|301602407|gb|ADK79109.1| peroxisome proliferator activated receptor gamma [Ctenopharyngodon
idella]
Length = 337
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 27/298 (9%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + E A D + + + ++L T
Sbjct: 31 HNA-IRFGRMPQAEKEKLLAEFSTDMDHMHPESA------DLRALARHLYESYLKYFPLT 83
Query: 80 ADKIEPMLRR---------AREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERF-- 128
K +L + + + C P + ++Q+ RF
Sbjct: 84 KAKARAILSGKTSDNAPFVIHDMKSLMEGEHMINCRQMPMQEHRRSDMGIMQEVELRFFH 143
Query: 129 ------SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + +V EFAK +PGF L +DQVTLLK GV EVL++ +A + + + ++I
Sbjct: 144 SCQSRSAEAVSEVTEFAKSVPGFVNLDLNDQVTLLKYGVIEVLIIMMAPLMN-KDGTLIS 202
Query: 183 LNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
+ R+ + S F +M+ F+F+ + N L L D+++ LF +++++S R GL N
Sbjct: 203 YGQIFMTREFLKSLRKPFCEMMEPKFEFSVKFNMLELDDSDMALFLAVIILSGDRPGLLN 262
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ +E ++ + + L L NHP+ + L A+++ + DLR L H + + + TE
Sbjct: 263 VKPIEDLQETVLHSLELQLKTNHPDSLQLFAKVLQKMTDLRQLVTDHVQLIQLMKETE 320
>gi|410260692|gb|JAA18312.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352707|gb|JAA42957.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 443
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 207 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 266
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + D E GL S+I +I
Sbjct: 267 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 326
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 327 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 386
Query: 292 VAFQM 296
+ +M
Sbjct: 387 ITLKM 391
>gi|395753556|ref|XP_003779623.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome proliferator-activated
receptor alpha [Pongo abelii]
Length = 476
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 35/308 (11%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS---TLACPLNPNSHPLQGQQE------LL 121
+K++ + +A +P + T C + +A P + Q + E L+
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMARRRWVAKLDGPMAFQEQSEAEVRIFHWLI 279
Query: 122 QDFSERFSPTIRDVVEFAKR-IPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180
Q S T+ ++ E R PGF+ L +DQVTLLK GV+E + L+ + + +
Sbjct: 280 QCTS---VETVTELTELRXRPFPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKGRGWL 336
Query: 181 ICLNGEVLVRDSIHSSNA-----RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
+ + R+ + S + R +M+ FDFA + N L L D++I LF + ++ R
Sbjct: 337 VAYGNGFITREFLKSLSGTVCVFRDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDR 396
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
GL N +E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + +
Sbjct: 397 PGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIK 456
Query: 296 MTEQQQQL 303
TE L
Sbjct: 457 KTESDAAL 464
>gi|322802471|gb|EFZ22811.1| hypothetical protein SINV_12787 [Solenopsis invicta]
Length = 293
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 98/159 (61%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+KR+PGF+ L +DQ+TLLKA EV+++R+A +D QT+S+I N + R
Sbjct: 113 TVQLIVEFSKRLPGFNELLREDQITLLKACSSEVMMLRMARKYDVQTDSIIFANNQSYTR 172
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
DS + + ++ + F ++ + +++ E L ++IV+ S + L ++++ +
Sbjct: 173 DSYNVAGMGDTIEDLLRFCRQMYAMRVNNAEYALLTAIVIFSERPNLLESRKVEKLQEIY 232
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
L+ + +V N+ P+ + A+L+S+L +LRTL +SE
Sbjct: 233 LKTLKAYVDNRRRPKSCTIFAKLLSVLTELRTLGNQNSE 271
>gi|226316403|gb|ACO44665.1| ecdysteroid receptor isoform 1 [Crangon crangon]
Length = 440
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 101/174 (58%), Gaps = 4/174 (2%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+K++PGF L +DQ+TLLKA EV+++R A +D+ T+S++ N +
Sbjct: 254 TVQLIVEFSKQLPGFDTLQREDQITLLKACSSEVMMLRAARRYDANTDSIVFGNNYPYTQ 313
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG- 249
DS S+ ++F F L + + + E L ++I + S R LR VE+++
Sbjct: 314 DSYESAGLGESAAAIFQFCRNLCKMKVDNAEYALLAAIAIFS-ERPALREPSKVEKLQEI 372
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
LE + HV N+ P + A+L+++L DLRTL L+SE + F +T + ++L
Sbjct: 373 YLEALKAHVENRRTPRSSVVFAKLLNVLTDLRTLGNLNSE--MCFSLTLKNKKL 424
>gi|410981037|ref|XP_003996879.1| PREDICTED: retinoic acid receptor alpha isoform 4 [Felis catus]
Length = 365
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 126 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 185
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 186 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 245
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 246 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 303
>gi|64124|emb|CAA78621.1| retinoic acid receptor alpha 2 [Notophthalmus viridescens]
Length = 452
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + +
Sbjct: 217 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQD 276
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 277 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 336
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 337 EQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKM 394
>gi|5596832|emb|CAB51396.1| peroxisome proliferator-activated receptor gamma [Platichthys
flesus]
Length = 532
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 99/169 (58%), Gaps = 3/169 (1%)
Query: 132 IRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRD 191
+R+V EFAK IPGF+ L +DQVTLLK GV EVL++ ++ + + + ++I + R+
Sbjct: 348 VREVTEFAKSIPGFTDLDLNDQVTLLKYGVIEVLIIMMSPLMN-KDGTLISYGQIFMTRE 406
Query: 192 SIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG 249
+ S F +M+ F+F+ + N L L D+++ LF ++++S R GL N + +E+++
Sbjct: 407 FLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLVVIILSGDRPGLLNVKPIEQLQE 466
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ + L L NHP+ + L A+L+ + DLR + H + + TE
Sbjct: 467 TVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKTE 515
>gi|335297715|ref|XP_003358103.1| PREDICTED: retinoic acid receptor alpha [Sus scrofa]
Length = 365
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 126 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 185
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 186 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 245
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 246 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 303
>gi|3213188|gb|AAC23439.1| retinoic acid receptor alpha 2 isoform [Rattus norvegicus]
Length = 459
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 220 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 279
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 280 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 339
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P Q ++ +++ + DLR+++ +E+++ +M
Sbjct: 340 EQPDKVDMLQEPLLEALKVYVRKRRPSQPHMFPKMLMKITDLRSISAKGAERVITLKM 397
>gi|340726649|ref|XP_003401667.1| PREDICTED: ecdysone receptor-like isoform 2 [Bombus terrestris]
Length = 589
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+KR+PGF L +DQ+ LLKA EV+++R+A +D QT+S+I N + R
Sbjct: 407 TVQLIVEFSKRLPGFDELMREDQMALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTR 466
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG- 249
DS + + ++ + F ++ + +++ E L ++IV+ S R L VE+++
Sbjct: 467 DSYNVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFS-ERPNLLEGWKVEKIQEI 525
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
LE + +V N+ P+ + A+L+S+L +LRTL +SE + + ++
Sbjct: 526 YLEALKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEMCFSLKFKNKK 576
>gi|84043322|gb|ABC50163.1| peroxisome proliferator-activated receptor gamma [Rachycentron
canadum]
gi|157418573|gb|ABV55020.1| peroxisome proliferator-activated receptor gamma [Rachycentron
canadum]
Length = 531
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
Q R + +R+V EFAK IPGF L +DQVTLLK GV EVL++ ++ + + + +
Sbjct: 335 FFQSCQSRSAEAVREVTEFAKSIPGFIDLDLNDQVTLLKYGVIEVLIIMMSPLMN-KDGT 393
Query: 180 MICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+I + R+ + S F +M+ F+F+ + N L L D+++ LF +++++S R G
Sbjct: 394 LISYGQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAVIILSGDRPG 453
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L N + +E+++ + + L L NHP+ + L A+L+ + DLR + H + + T
Sbjct: 454 LLNVKPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKT 513
Query: 298 E 298
E
Sbjct: 514 E 514
>gi|223718070|ref|NP_001138774.1| retinoic acid receptor alpha isoform 4 [Homo sapiens]
gi|218527113|gb|ACK86665.1| retinoic acid receptor alpha isoform 1 deltaBC [Homo sapiens]
Length = 365
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 126 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 185
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 186 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 245
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 246 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 303
>gi|348526468|ref|XP_003450741.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
isoform 1 [Oreochromis niloticus]
Length = 475
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 41/311 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAEL-DDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ +K EK + + L D + ++ + A++
Sbjct: 158 HNA-IRFGRMPQAEKLKL------KEESKMVEKEVESPLMSDHKFLVRQIHDAYMKNFNM 210
Query: 79 TADKIEPMLRRAREHP--------TYTACPSTLACPL----NPNSHPLQGQ-------QE 119
K +L P T+ TLA + P S + GQ E
Sbjct: 211 NKAKARLILTGKTSKPPFIIHDMETFQLAERTLAVHMINSDYPESDSVLGQVSPAASCGE 270
Query: 120 LLQDFSE---------RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
L Q +E T+ ++ EFAK +PGF L +DQVTLLK GV+E L LA
Sbjct: 271 LRQREAEARLFHCCQSTSVETVTELTEFAKAMPGFQSLDLNDQVTLLKYGVYEALFTLLA 330
Query: 171 -CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSS 227
CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF +
Sbjct: 331 SCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALFVA 388
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLH 287
++ R GL + LVE+++ + L L NHP+ L L+ L DLR L H
Sbjct: 389 AIICCGDRPGLVDVPLVEQLQESIVQALRLHLLANHPDDTFLFPRLLQKLADLRELVTEH 448
Query: 288 SEKLVAFQMTE 298
++ + + TE
Sbjct: 449 AQLVQEIKTTE 459
>gi|281352860|gb|EFB28444.1| hypothetical protein PANDA_007975 [Ailuropoda melanoleuca]
Length = 494
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C + N
Sbjct: 291 EMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-CRAYNADN 349
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+ G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R GL
Sbjct: 350 HTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSSLRFSEDEIALYTALVLINANRPGL 409
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLHSEKLVAFQ 295
+ K VE+++ LE H L + H + +++ LP LR+L H EKL FQ
Sbjct: 410 QEKRKVEQLQHNLELAFHHHLYKTHRQG------ILAKLPPKGKLRSLCSQHVEKLQTFQ 463
>gi|348526470|ref|XP_003450742.1| PREDICTED: peroxisome proliferator-activated receptor alpha-like
isoform 2 [Oreochromis niloticus]
Length = 475
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 41/311 (13%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAEL-DDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK ++ +K EK + + L D + ++ + A++
Sbjct: 158 HNA-IRFGRMPQAEKLKL------KEESKMVEKEVESPLMSDHKFLVRQIHDAYMKNFNM 210
Query: 79 TADKIEPMLRRAREHP--------TYTACPSTLACPL----NPNSHPLQGQ-------QE 119
K +L P T+ TLA + P S + GQ E
Sbjct: 211 NKAKARLILTGKTSKPPFIIHDMETFQLAERTLAVHMINSDYPESDSVLGQVSPAASCGE 270
Query: 120 LLQDFSE---------RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
L Q +E T+ ++ EFAK +PGF L +DQVTLLK GV+E L LA
Sbjct: 271 LRQREAEARLFHCCQSTSVETVTELTEFAKAMPGFQSLDLNDQVTLLKYGVYEALFTLLA 330
Query: 171 -CMFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSS 227
CM ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF +
Sbjct: 331 SCM--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNSLELDDSDLALFVA 388
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLH 287
++ R GL + LVE+++ + L L NHP+ L L+ L DLR L H
Sbjct: 389 AIICCGDRPGLVDVPLVEQLQESIVQALRLHLLANHPDDTFLFPRLLQKLADLRELVTEH 448
Query: 288 SEKLVAFQMTE 298
++ + + TE
Sbjct: 449 AQLVQEIKTTE 459
>gi|410226730|gb|JAA10584.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300282|gb|JAA28741.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + D E GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>gi|350418251|ref|XP_003491800.1| PREDICTED: ecdysone receptor-like isoform 2 [Bombus impatiens]
Length = 591
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+KR+PGF L +DQ+ LLKA EV+++R+A +D QT+S+I N + R
Sbjct: 409 TVQLIVEFSKRLPGFDELMREDQMALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTR 468
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG- 249
DS + + ++ + F ++ + +++ E L ++IV+ S R L VE+++
Sbjct: 469 DSYNVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFS-ERPNLLEGWKVEKIQEI 527
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
LE + +V N+ P+ + A+L+S+L +LRTL +SE + + ++
Sbjct: 528 YLEALKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEMCFSLKFKNKK 578
>gi|1089846|emb|CAA55134.1| retinoic acid recptor alpha isoform 2-1 [Gallus gallus]
Length = 453
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 216 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 335
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 336 EQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKM 393
>gi|157041191|dbj|BAF79665.1| ecdysone receptor A isoform [Camponotus japonicus]
Length = 576
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEF+KR+PGF+ L +DQ+TLLKA EV+++R+A +D T+S+I N + R
Sbjct: 394 TVQLIVEFSKRLPGFNELMREDQITLLKACSSEVMMLRMARKYDVHTDSIIFANNQPYTR 453
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG- 249
DS + + ++ + F ++ + +++ E L ++IV+ S R L + VE+++
Sbjct: 454 DSYNVAGMGDTIEDLLRFCRQMYAMRVNNAEYALLTAIVIFS-ERPNLVECKKVEKLQEI 512
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
L+ + +V N+ P+ + A+L+S+L +LRTL +SE + + ++
Sbjct: 513 YLKTLKAYVDNRRRPKSGTIFAKLLSVLTELRTLGNQNSEMCLNLKFKNKK 563
>gi|158605197|gb|ABW74841.1| peroxisome proliferator-activated receptor alpha [Merluccius
merluccius]
Length = 337
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 36/294 (12%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK R+ E+ + + ++ + +A++ +
Sbjct: 49 HNA-IRFGRIPQSEKQRLKEEFGTGGRR---EEEQTPTPPNHKVLVQQIHQAYMRNFSMN 104
Query: 80 ADKIEPMLRRAREHP--------TYTACPSTLA-------CPLNPNSHPLQGQQELLQDF 124
D+ +L P T+ A TL CP P+ Q+ L++
Sbjct: 105 KDRARLILTGKTSRPPFVIHDMETFQAAEQTLEVRGAAGPCPGPVRRPPIWLQEPLVKGD 164
Query: 125 SERFSPTI------------RDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL-VRLAC 171
ER P + + EFAK IPGF L +QVTLLK GV+E L + +C
Sbjct: 165 LERQKPGCSSAARALQWSGSKKLTEFAKNIPGFLHLDLTNQVTLLKYGVYEALFTLHASC 224
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
M ++ ++ G + R+ + S F +M+ F FA R N L L D+++ LF S +
Sbjct: 225 M--NKDGLLVARGGGFITREFLKSLRRPFSDMMEPKFQFATRFNALQLDDSDLALFVSTI 282
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
+ R GL N LVER++ + L L NH + L +L+ L DLR L
Sbjct: 283 ICCGDRPGLVNASLVERLQESIVQALQLHLVANHRDNAFLFPKLLQKLADLREL 336
>gi|10835871|pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 37 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 96
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 97 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 156
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 157 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 216
Query: 292 VAFQM 296
+ +M
Sbjct: 217 ITLKM 221
>gi|585482|sp|Q08882.1|HR3_MANSE RecName: Full=Probable nuclear hormone receptor HR3; Short=mHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|396804|emb|CAA52654.1| MHR3 [Manduca sexta]
Length = 548
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 339 EEMWLDCADKLTAMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLID--V 396
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
N L G+V+ +R+ +H+ + R L+ +F+ A+ + L L+++E+ L+ S+V++ P
Sbjct: 397 NREQVLYGDVVLPIRECVHARDPRDMALVSGIFEAAKSIARLKLTESELALYQSLVLLWP 456
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+ + + + + H + NH + + L++ +P R L+ +H
Sbjct: 457 ERHGVMGNTEIRCLFNMSMSAMRHEIEANHAPLKGDVTVLDTLLAKIPTFRELSLMHLGA 516
Query: 291 LVAFQMT 297
L F+MT
Sbjct: 517 LSRFKMT 523
>gi|643611|gb|AAA62110.1| PPAR gamma [Mus musculus]
Length = 475
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 138/299 (46%), Gaps = 25/299 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR + EK ++LA + + E +ALA L D + T +A
Sbjct: 175 HNA-IRFGRDRQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 234 ILTGKTTDK-SPFV-------IYDMSSFMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 285
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I
Sbjct: 286 RSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQG 344
Query: 187 VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +
Sbjct: 345 FMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPI 404
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
E ++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 405 EDIQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSL 463
>gi|444714018|gb|ELW54906.1| Retinoic acid receptor alpha [Tupaia chinensis]
Length = 462
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|355561621|gb|EHH18253.1| hypothetical protein EGK_14816 [Macaca mulatta]
gi|355748489|gb|EHH52972.1| hypothetical protein EGM_13521 [Macaca fascicularis]
gi|380813958|gb|AFE78853.1| peroxisome proliferator-activated receptor delta isoform 1 [Macaca
mulatta]
gi|383412973|gb|AFH29700.1| peroxisome proliferator-activated receptor delta isoform 1 [Macaca
mulatta]
gi|384939384|gb|AFI33297.1| peroxisome proliferator-activated receptor delta isoform 1 [Macaca
mulatta]
Length = 441
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 22/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + + ++ ++ D + + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQ-----YNPQVADLKAFSKHIYNAYLKNFNMT 193
Query: 80 ADKIEPMLRRAREHP---------TYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP 130
K +L H T L N P + + + + +
Sbjct: 194 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT 253
Query: 131 --TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R+++EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 254 VETVRELIEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 311
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 312 VTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPQVE 371
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ + L L NHP+ L +L+ + DLR L H++ + + TE + L
Sbjct: 372 AIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSL 429
>gi|351709125|gb|EHB12044.1| Retinoic acid receptor alpha [Heterocephalus glaber]
Length = 549
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 315 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLSIADQITLLKAACLDILILRICTRYTPEQD 374
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 375 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 434
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 435 EQPERVDLLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 492
>gi|131665094|dbj|BAF49029.1| ecdysone receptor A1 [Daphnia magna]
Length = 721
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ VEF+KR+PGF L +DQ+TLLKA EV+++R A +D+ T+S++ N R
Sbjct: 540 TVQLTVEFSKRLPGFDTLLREDQITLLKACSSEVMMLRCARRYDANTDSIVFANNLPYTR 599
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG- 249
+S + + DS+F F + ++ + + + E L ++IV+ S R GL VE+++
Sbjct: 600 ESYNMAGVGDTADSLFRFGKTMSLMKVDNAEYALLTAIVIFS-ERPGLVEARKVEKIQEI 658
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
LE + +V+N + M A+L+S+L +LRTL L+SE + ++ ++
Sbjct: 659 YLEALQAYVMN-HRVRPMTEFAKLLSVLTELRTLGNLNSEMCFSLKLKNKK 708
>gi|10835870|pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
gi|10835872|pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
gi|24158599|pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 36 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 95
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 96 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 155
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 156 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 215
Query: 292 VAFQM 296
+ +M
Sbjct: 216 ITLKM 220
>gi|9257146|pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
gi|9257147|pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 41 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 100
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 101 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 160
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 161 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 220
Query: 292 VAFQM 296
+ +M
Sbjct: 221 ITLKM 225
>gi|218156248|dbj|BAH03356.1| retinoic acid receptor alpha [Scyliorhinus torazame]
Length = 364
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 97/178 (54%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK +PGF+ L DQ+TLLKA ++L++R+ + +
Sbjct: 132 DLWDKFSELSTKCIIKTVEFAKHLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQD 191
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 192 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 251
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 252 EEPEKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSISAKGAERVITLKM 309
>gi|391345128|ref|XP_003746845.1| PREDICTED: ecdysone receptor-like [Metaseiulus occidentalis]
Length = 647
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 109/188 (57%), Gaps = 7/188 (3%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
Q+ Q +E T++ +VEF+KR+PGF L +DQ+TLLKA E++++R A +D +T
Sbjct: 450 QKRFQHITEVTILTVQLIVEFSKRVPGFDTLQREDQITLLKACSSEMMMLRGARKYDVKT 509
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
+S++ N + R++ S++ D++F F ++ L + + E L ++IV+ S R
Sbjct: 510 DSIVFANNQPYTRENYRSASVGDSADALFPFCRKMCQLRVDNAEYALLTAIVIFS-ERPS 568
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNL---CAELISMLPDLRTLNQLHSEKLVAF 294
L E VE+++ N L + ++NH + A+L+++L +LRTL L+SE + F
Sbjct: 569 LLEPEKVEQIQMFYTNTL-RMYSENHRQSQGTPAHFAKLLAILTELRTLGSLNSE--ICF 625
Query: 295 QMTEQQQQ 302
+T +Q +
Sbjct: 626 SLTVKQNK 633
>gi|157835301|pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
gi|157836833|pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
gi|157836963|pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 62 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 121
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 122 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 181
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 182 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 241
Query: 292 VAFQM 296
+ +M
Sbjct: 242 ITLKM 246
>gi|131665098|dbj|BAF49030.1| ecdysone receptor A1 [Daphnia magna]
Length = 693
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ VEF+KR+PGF L +DQ+TLLKA EV+++R A +D+ T+S++ N R
Sbjct: 512 TVQLTVEFSKRLPGFDTLLREDQITLLKACSSEVMMLRCARRYDANTDSIVFANNLPYTR 571
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG- 249
+S + + DS+F F + ++ + + + E L ++IV+ S R GL VE+++
Sbjct: 572 ESYNMAGVGDTADSLFRFGKTMSLMKVDNAEYALLTAIVIFS-ERPGLVEARKVEKIQEI 630
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300
LE + +V+N + M A+L+S+L +LRTL L+SE + ++ ++
Sbjct: 631 YLEALQAYVMN-HRVRPMTEFAKLLSVLTELRTLGNLNSEMCFSLKLKNKK 680
>gi|432910610|ref|XP_004078439.1| PREDICTED: retinoic acid receptor beta-like [Oryzias latipes]
Length = 433
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%)
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ H +Q L FSE + I VVEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 215 SDHRIQLDLGLWDKFSELATKCIVKVVEFAKRVPGFTGLTIADQITLLKAACLDILILRI 274
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
+ ++M +G L R IH++ L D +F FA +L L + +TE GL S+I
Sbjct: 275 CTRYTPDQDTMTFSDGLTLTRTQIHNAGFGSLTDHVFTFAGQLLPLEMDETESGLLSAIC 334
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
++S R L+ V+ ++ L L + P + + + + DLR+++ +E
Sbjct: 335 LVSGDRQDLKEPSKVDVLQEPLLEALKIYSRKRRPSMPLMFPKALMKITDLRSISAKGAE 394
Query: 290 KLVAFQM 296
++V+ +M
Sbjct: 395 RVVSLKM 401
>gi|344286022|ref|XP_003414758.1| PREDICTED: retinoic acid receptor alpha-like isoform 1 [Loxodonta
africana]
Length = 464
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLK ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKGACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPERVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|241666434|ref|NP_037273.2| peroxisome proliferator-activated receptor delta [Rattus
norvegicus]
gi|12830496|emb|CAC29088.1| peroxisome proliferator-activated receptor beta [Rattus norvegicus]
gi|149043464|gb|EDL96915.1| peroxisome proliferator activated receptor delta, isoform CRA_b
[Rattus norvegicus]
Length = 440
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 134/298 (44%), Gaps = 22/298 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S C + +L D + + A+L T
Sbjct: 139 HNA-IRFGRMPEAEKRKLVAGLTASEG--CQQNP---QLADLKAFSKHIYNAYLKNFNMT 192
Query: 80 ADKIEPMLRRAREH---------PTYTACPSTLACPLNPNSHPLQGQ--QELLQDFSERF 128
K +L H T L N P + +
Sbjct: 193 KKKARSILTGKSSHNAPFIIHDIETLWQAEKGLVWKQLVNGPPPYNEISVHVFYRCQSTT 252
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 253 VETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 310
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V + + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 311 VTHEFLRSIRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPQVE 370
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
++ + L L NHP+ L +L+ + DLR L H++ + + TE + L
Sbjct: 371 AIQDTILQALEFHLQVNHPDSQYLFPKLLQKMADLRQLVTEHAQMMQWLKKTESETLL 428
>gi|327275487|ref|XP_003222505.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 2 [Anolis
carolinensis]
Length = 458
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + +
Sbjct: 220 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQD 279
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 280 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 339
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 340 EQPDRVDKLQEPLLEALKIYVRKRRPSKPHMFPKMLMKITDLRSISAKGAERVITLKM 397
>gi|332847668|ref|XP_003315499.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Pan troglodytes]
gi|119581061|gb|EAW60657.1| retinoic acid receptor, alpha, isoform CRA_e [Homo sapiens]
Length = 478
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 239 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 298
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 299 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 358
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 359 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 416
>gi|410981031|ref|XP_003996876.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Felis catus]
gi|410981033|ref|XP_003996877.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Felis catus]
Length = 462
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|431890665|gb|ELK01544.1| Retinoic acid receptor alpha [Pteropus alecto]
Length = 462
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|348521578|ref|XP_003448303.1| PREDICTED: retinoic acid receptor gamma-A-like [Oreochromis
niloticus]
Length = 495
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 214 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTSLTIADQITLLKSACLDILMLRICT 273
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 274 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 333
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L + V++++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 334 CGDRMDLEEPQKVDKLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 393
Query: 292 VAFQM 296
+ +M
Sbjct: 394 ITLKM 398
>gi|332258553|ref|XP_003278361.1| PREDICTED: retinoic acid receptor alpha [Nomascus leucogenys]
Length = 480
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>gi|193783674|dbj|BAG53585.1| unnamed protein product [Homo sapiens]
Length = 478
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 239 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 298
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 299 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 358
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 359 EQPDRVDMLQEPLLEALKVYVRKRRPNRPHMFPKMLMKITDLRSISAKGAERVITLKM 416
>gi|410051357|ref|XP_003315498.2| PREDICTED: retinoic acid receptor alpha isoform 1 [Pan troglodytes]
Length = 480
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 243 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 302
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 303 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 362
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 363 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 420
>gi|410051359|ref|XP_003953076.1| PREDICTED: retinoic acid receptor alpha [Pan troglodytes]
Length = 482
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 243 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 302
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 303 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 362
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 363 EQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 420
>gi|194389254|dbj|BAG65615.1| unnamed protein product [Homo sapiens]
Length = 343
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 21/294 (7%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
+RFGR+P+ EK +++A + + ++ ++ D + + A+L T K
Sbjct: 45 IRFGRMPEAEKRKLVAGLTANEGSQYN-----PQVADLKAFSKHIYNAYLKNFDMTKKKA 99
Query: 84 EPMLRRAREH---------PTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSP--TI 132
+L H T L N P + + + + + T+
Sbjct: 100 RSILTGKASHTAPFVIHDIKTLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETV 159
Query: 133 RDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV-RD 191
R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG V R+
Sbjct: 160 RELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGFVTRE 217
Query: 192 SIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG 249
+ S F +++ F+FA + N L L D+++ LF + +++ R GL N VE ++
Sbjct: 218 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 277
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+ L L NHP+ L +L+ + DLR L H++ + + TE + L
Sbjct: 278 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSL 331
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,696,803,935
Number of Sequences: 23463169
Number of extensions: 348985422
Number of successful extensions: 1356077
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3411
Number of HSP's successfully gapped in prelim test: 1633
Number of HSP's that attempted gapping in prelim test: 1345778
Number of HSP's gapped (non-prelim): 8161
length of query: 585
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 437
effective length of database: 8,886,646,355
effective search space: 3883464457135
effective search space used: 3883464457135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)