BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3123
(585 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50239|E75_GALME Ecdysone-inducible protein E75 OS=Galleria mellonella GN=E75 PE=2
SV=1
Length = 711
Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust.
Identities = 300/608 (49%), Positives = 379/608 (62%), Gaps = 96/608 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQ ST T+ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 118 VRFGRVPKREKARILAAMQSST-TRAHEQAAAAELDDGPRLLARVVRAHLDTCEFTRDRV 176
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M AR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 177 AAMRNGARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 229
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 230 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 289
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L++ L V+ QN
Sbjct: 290 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELVERMHSRLKSCLQTVIAQN 349
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
+ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W ++ G+
Sbjct: 350 RSDGPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWVEDE------GA 400
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
W+D ++ +SP+GSVSS+ES +T PLLAATLAG R R
Sbjct: 401 LWADSGADDSARSPIGSVSSSESS-----------ETTGDCGTPLLAATLAG-----RRR 444
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 445 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IVGPES 503
Query: 422 VCSSPRSSFEE-----KDFNHVEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQK 475
CSSPRSS EE + +DMPVLKR+LQAPPL D SSLMDEAYKPHKKFRA+R+
Sbjct: 504 GCSSPRSSLEEHSDDRRPIAPADDMPVLKRVLQAPPLYDASSLMDEAYKPHKKFRAMRRD 563
Query: 476 DSAEAE-----------------------------PLHPSLASSHSMLAKSLMEGPRMTP 506
+EAE P+ L+S+HS+LAKSLMEGPRMTP
Sbjct: 564 TWSEAEARPGRPTPSPQPPHHPHPASPAHPAHSPRPIRAPLSSTHSVLAKSLMEGPRMTP 623
Query: 507 DQLKRTEIVHNYIMR--TDSPPSAYFPRSWHSSSVIKPAPPATVTSNALLELQVAATS-- 562
+QLKRT+I+ Y+ R T +P R+ + + A PA A L++ VA T
Sbjct: 624 EQLKRTDIIQQYMRRGETGAPTEGCPLRAGGLLTCFRGASPAPQPVIA-LQVDVAETDAP 682
Query: 563 QPLNLSKK 570
QPLNLSKK
Sbjct: 683 QPLNLSKK 690
>sp|Q08893|E75_MANSE Ecdysone-inducible protein E75 OS=Manduca sexta GN=E75 PE=2 SV=2
Length = 699
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 305/610 (50%), Positives = 384/610 (62%), Gaps = 96/610 (15%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS+ ++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 116 VRFGRVPKREKARILAAMQQSSTSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 175
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 176 AAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 228
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 229 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 288
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L+ L V+ QN
Sbjct: 289 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNVELVERMHTRLKACLQTVIAQN 348
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
P++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+
Sbjct: 349 RPDRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSEEE------AV 399
Query: 323 SWSDVTMEEV-KSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
SW D +E+ +SP+GSVSS+ES + PLLAATLAG R R
Sbjct: 400 SWVDSGADELARSPIGSVSSSESG-----------EAVGDCGTPLLAATLAG-----RRR 443
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ S
Sbjct: 444 LDSRGSVDEEALGVAHLAHNGLTVTPVRQPPRYRKLDSPTDSGIESGNEKHERIVGT-GS 502
Query: 422 VCSSPRSSFEEKDFNH-----VEDMPVLKRILQAPPL--DTSSLMDEAYKPHKKFRALRQ 474
CSSPRSS EE + + +DMPVLKR+LQAPPL T SLMDEAY+ HKKFRALR
Sbjct: 503 GCSSPRSSLEEHNEDRRPPVSADDMPVLKRVLQAPPLYGGTPSLMDEAYRRHKKFRALR- 561
Query: 475 KDSAEAE-------------------PLHP---------SLASSHSMLAKSLMEGPRMTP 506
+D+ EAE P HP SL+S+HS+LAKSLMEGPRMTP
Sbjct: 562 RDTGEAEARTVRPTPSPQPQHPHPANPAHPAHSPRPQRASLSSTHSVLAKSLMEGPRMTP 621
Query: 507 DQLKRTEIVHNYIMRTD-SPPSAYFP-RSWHSSSVIKPAPPATVTSNALLELQVAATSQP 564
+QLKRT+I+ Y+ R + S P+ P R+ + + A PA +L LQV T P
Sbjct: 622 EQLKRTDIIQQYMRRGESSAPAEGCPLRAGGLLTCYRGASPA---PQPVLALQVDVTDAP 678
Query: 565 LNLSKKTPPP 574
LNLSKK+P P
Sbjct: 679 LNLSKKSPSP 688
>sp|O01639|E75_CHOFU Ecdysone-inducible protein E75 OS=Choristoneura fumiferana GN=E75
PE=2 SV=1
Length = 690
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 299/609 (49%), Positives = 381/609 (62%), Gaps = 105/609 (17%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQS++++ E+A AAELDD R+L+ VVRAHLDTC FT D++
Sbjct: 118 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELDDAPRLLARVVRAHLDTCEFTRDRV 177
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M RAR+ PTY+ TLACPLNP LQ ++E FS+RF+ IR V++FA IP
Sbjct: 178 AAMRARARDCPTYSQ--PTLACPLNPAPE-LQSEKE----FSQRFAHVIRGVIDFAGLIP 230
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLK+G+F+ L VRL CMFD+ NS+ICLNG+++ RDSI S +NARFL+
Sbjct: 231 GFQLLTQDDKFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANARFLV 290
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F FAER+N ++L+D EIGLF +IV+I+P R GLRN ELVERM +L++ L V+ QN
Sbjct: 291 DSTFKFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNIELVERMHARLKSCLQTVIAQN 350
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
++ EL+ LPDLRTL+ LH+EKLV F+ TE ++ L +QQ W E+
Sbjct: 351 RADRPGFLRELMDTLPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWGDEEV------C 401
Query: 323 SWSDVTMEE-VKSPLGSVSSTESVCSNEVATLNEYTSTHAQNAPLLAATLAGAQCPHRNR 381
W+D +++ +SPLGSVSS+ES + PLLAATLAG R R
Sbjct: 402 PWADSGVDDSARSPLGSVSSSESG-----------EAPSDCGTPLLAATLAG-----RRR 445
Query: 382 ANSGSTTDGDR--------------------RFRKLDSPTDSGIESGTEKIEKHASAPTS 421
+S + D + R+RKLDSPTDSGIESG EK E+ P S
Sbjct: 446 LDSRGSVDEEALGVAHLAHNGLTVTPVRPPPRYRKLDSPTDSGIESGNEKHER-IVGPGS 504
Query: 422 VCSSPRSSFEEKDFNH----VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKD 476
CSSPRSS EE + +DMPVLKR+LQAPPL D SSLMDEAYKPHKKFRA+R +D
Sbjct: 505 GCSSPRSSLEEHMEDRRPLAADDMPVLKRVLQAPPLYDASSLMDEAYKPHKKFRAMR-RD 563
Query: 477 SAEAE-----------PLHP--------------------SLASSHSMLAKSLMEGPRMT 505
+ EAE P+HP L+S+HS+LAKSLMEGPRMT
Sbjct: 564 TGEAEARPMRPTPSPQPMHPHPGSPAHPAHPAHSPRPLRAPLSSTHSVLAKSLMEGPRMT 623
Query: 506 PDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVIKPAPPATVTSNALLELQVAATSQPL 565
P+QLKRT+I+ Y+ R ++ + + A P L++ VA QPL
Sbjct: 624 PEQLKRTDIIQQYMRRGEAGEECR-----AGLLLYRGASP--------LQVDVADAPQPL 670
Query: 566 NLSKKTPPP 574
NLSKK+P P
Sbjct: 671 NLSKKSPSP 679
>sp|O77245|E75_METEN Nuclear hormone receptor E75 OS=Metapenaeus ensis GN=E75 PE=2 SV=1
Length = 606
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 297/435 (68%), Gaps = 43/435 (9%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKA+ILAAMQ S N K E+A+ AEL+D+ R+ + ++RAH+DTC FT DK+
Sbjct: 103 VRFGRVPKREKAKILAAMQ-SVNAKSQERAVLAELEDDTRVTAAIIRAHMDTCDFTRDKV 161
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
PML++AR HP+YT CP LACPLNP PL GQQEL+QDFSE P IR VVEFAKR+P
Sbjct: 162 APMLQQARTHPSYTQCPPYLACPLNPRPVPLHGQQELVQDFSEALLPAIRGVVEFAKRLP 221
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSS-NARFLM 202
GF L +DQVTLLKAGVFEVLLVRLA MFD++TN+M+CLNG+++ R+++H+S NARFLM
Sbjct: 222 GFQQLPQEDQVTLLKAGVFEVLLVRLAGMFDARTNAMLCLNGQLVRREALHTSVNARFLM 281
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DSMFDFAER+N L L+D E+ LF ++VV++P R GLRN ELVER+ +L N L V++++
Sbjct: 282 DSMFDFAERVNSLALNDAELALFCAVVVLAPDRPGLRNAELVERVHRRLVNCLQAVVSKH 341
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDNSKSPTGS 322
HPE NL +L+S +PDLRTLN LHSEKL+ ++MTE A W D+S+ S
Sbjct: 342 HPENPNLQRDLLSKIPDLRTLNTLHSEKLLKYKMTEH----TAAGAPW---DDSR----S 390
Query: 323 SWS-------------DVTMEEVKSPLGSVSSTESVCSNEVAT-----LNEYTSTHAQNA 364
SWS T E ++SP VS +ES+CS E A+ S + +
Sbjct: 391 SWSMEQESSVGSPSSSYTTDEAMRSP---VSCSESICSGESASSGESLCGSEVSGYTELR 447
Query: 365 PLLAATLAGAQCPHRNRANSGS-TTDGDRRF----RKLDSPTDSGIESGTEKIEKHASAP 419
P LA + H A+SG T+ + RK DSP DSGIESGT++ +K +S
Sbjct: 448 PPFP--LARRRHDHSEGASSGDEATESPLKCPFSKRKSDSPDDSGIESGTDRSDKLSSP- 504
Query: 420 TSVCSSPRSSFEEKD 434
SVCSSPRSS +EK+
Sbjct: 505 -SVCSSPRSSIDEKE 518
>sp|P17671|E75BC_DROME Ecdysone-induced protein 75B, isoforms C/D OS=Drosophila
melanogaster GN=Eip75B PE=2 SV=2
Length = 1199
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 276/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 316 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 375
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 376 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 429
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 430 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 489
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 490 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 549
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 550 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 606
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 607 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 665
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 666 SSAPLLAATLSGG-CPLRNRANSGSSGD 692
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 762 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 821
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 822 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 881
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 882 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 941
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 942 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 993
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 2/26 (7%)
Query: 553 LLELQV--AATSQPLNLSKKTPPPSP 576
LLELQV A ++QPLNLSKK+P P P
Sbjct: 1107 LLELQVDIADSAQPLNLSKKSPTPPP 1132
>sp|P17672|E75BA_DROME Ecdysone-induced protein 75B, isoform A OS=Drosophila melanogaster
GN=Eip75B PE=2 SV=2
Length = 1355
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 277/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 472 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 531
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 532 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 585
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 586 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 645
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 646 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 705
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 706 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 762
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 763 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 821
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 822 SSAPLLAATLSGG-CPLRNRANSGSSGD 848
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 106/232 (45%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKDF--------NH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 918 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 977
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 978 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1037
Query: 467 KKFRALRQKD--SAEAEP------------------------------------------ 482
KKFRALR ++ +AEA+
Sbjct: 1038 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1097
Query: 483 -LH---------PSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1098 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1149
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 2/26 (7%)
Query: 553 LLELQV--AATSQPLNLSKKTPPPSP 576
LLELQV A ++QPLNLSKK+P P P
Sbjct: 1263 LLELQVDIADSAQPLNLSKKSPTPPP 1288
>sp|P13055|E75BB_DROME Ecdysone-induced protein 75B, isoform B OS=Drosophila melanogaster
GN=Eip75B PE=2 SV=2
Length = 1412
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 276/388 (71%), Gaps = 33/388 (8%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 529 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 588
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP LQ +QE FS+RF+ IR V++FA IP
Sbjct: 589 SAMRQRARDCPSYSM-PTLLACPLNPAPE-LQSEQE----FSQRFAHVIRGVIDFAGMIP 642
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 643 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 702
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 703 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 762
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGEDN------- 315
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE ++ L +QQ W ED
Sbjct: 763 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELL--RQQMWSMEDGNNSDGQQ 819
Query: 316 SKSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLN------EYTSTHA 361
+KSP+G SW+D + +E KSPLGSVSSTES S++ ++ + S A
Sbjct: 820 NKSPSG-SWADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 878
Query: 362 QNAPLLAATLAGAQCPHRNRANSGSTTD 389
+APLLAATL+G CP RNRANSGS+ D
Sbjct: 879 SSAPLLAATLSGG-CPLRNRANSGSSGD 905
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 103/232 (44%), Gaps = 95/232 (40%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHASAPTSVCSSPRSSFEEKD--------FNH-- 437
T G R+RKLDSPTDSGIESG EK E A + S D NH
Sbjct: 975 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDDALDCSDAAANHNQ 1034
Query: 438 ------------------------------VEDMPVLKRILQAPPL-DTSSLMDEAYKPH 466
VEDMPVLKR+LQAPPL DT+SLMDEAYKPH
Sbjct: 1035 VVQHPQLSVVSVSPVRSPQPSTSSHLKRQIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPH 1094
Query: 467 KKFRALRQK--DSAEAEP------------------------------------------ 482
KKFRALR + ++AEA+
Sbjct: 1095 KKFRALRHREFETAEADASSSTSGSNSLSAGSPRQSPVPNSVATPPPSAASAAAGNPAQS 1154
Query: 483 -LHPSLASS---------HSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDS 524
LH L S HS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S
Sbjct: 1155 QLHMHLTRSSPKASMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENS 1206
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 2/26 (7%)
Query: 553 LLELQV--AATSQPLNLSKKTPPPSP 576
LLELQV A ++QPLNLSKK+P P P
Sbjct: 1320 LLELQVDIADSAQPLNLSKKSPTPPP 1345
>sp|Q63504|NR1D2_RAT Nuclear receptor subfamily 1 group D member 2 OS=Rattus norvegicus
GN=Nr1d2 PE=2 SV=1
Length = 578
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 381 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 440
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LNGL LSD
Sbjct: 441 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNGLQLSDE 500
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 501 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 560
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 561 RSLNNMHSEELLAFKV 576
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 24 VRFGRVPKREKARILAAMQQSTNT 47
VRFGR+PKREK R+L MQ + T
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKT 197
>sp|Q14995|NR1D2_HUMAN Nuclear receptor subfamily 1 group D member 2 OS=Homo sapiens
GN=NR1D2 PE=1 SV=3
Length = 579
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CPL+ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPLSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 24 VRFGRVPKREKARILAAMQQSTNT 47
VRFGR+PKREK R+L MQ + T
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKT 197
>sp|Q60674|NR1D2_MOUSE Nuclear receptor subfamily 1 group D member 2 OS=Mus musculus
GN=Nr1d2 PE=1 SV=1
Length = 576
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 24 VRFGRVPKREKARILAAMQQSTNT 47
VRFGR+PKREK R+L MQ + T
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKT 197
>sp|Q63503|NR1D1_RAT Nuclear receptor subfamily 1 group D member 1 OS=Rattus norvegicus
GN=Nr1d1 PE=2 SV=2
Length = 615
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQKTLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
Score = 39.3 bits (90), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQNAMN 226
>sp|Q3UV55|NR1D1_MOUSE Nuclear receptor subfamily 1 group D member 1 OS=Mus musculus
GN=Nr1d1 PE=1 SV=1
Length = 615
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 597 RTLNNMHSEKLLSFRVDAQ 615
Score = 39.3 bits (90), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQSAMN 226
>sp|B3SV56|NR1D1_SHEEP Nuclear receptor subfamily 1 group D member 1 OS=Ovis aries PE=2
SV=1
Length = 614
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQSAMN 226
>sp|Q08E02|NR1D1_BOVIN Nuclear receptor subfamily 1 group D member 1 OS=Bos taurus
GN=NR1D1 PE=1 SV=1
Length = 613
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 595 RTLNNMHSEKLLSFRVDAQ 613
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQSAMN 226
>sp|P20393|NR1D1_HUMAN Nuclear receptor subfamily 1 group D member 1 OS=Homo sapiens
GN=NR1D1 PE=1 SV=1
Length = 614
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQMTEQ 299
RTLN +HSEKL++F++ Q
Sbjct: 596 RTLNNMHSEKLLSFRVDAQ 614
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 203 VRFGRIPKREKQRMLAEMQSAMN 225
>sp|P51448|RORA_MOUSE Nuclear receptor ROR-alpha OS=Mus musculus GN=Rora PE=1 SV=1
Length = 523
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 301
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 302 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
>sp|P35398|RORA_HUMAN Nuclear receptor ROR-alpha OS=Homo sapiens GN=RORA PE=1 SV=1
Length = 556
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 22/253 (8%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + T
Sbjct: 293 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQI---------------TWQ 334
Query: 105 CPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 335 TFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 394
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N++ +G+ D S + +F+F + L +HL++ EI
Sbjct: 395 EVVFIRMCRAFDSQNNTVY-FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 453
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 454 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 512
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 513 LCGRHTEKLMAFK 525
>sp|Q8R1B8|RORB_MOUSE Nuclear receptor ROR-beta OS=Mus musculus GN=Rorb PE=2 SV=3
Length = 470
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 221 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 264
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 265 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 324
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 325 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 383
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 384 AWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 442
Query: 296 MT 297
+
Sbjct: 443 QS 444
>sp|Q92753|RORB_HUMAN Nuclear receptor ROR-beta OS=Homo sapiens GN=RORB PE=2 SV=3
Length = 470
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + + + A S + ++ L Q
Sbjct: 225 RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------KSREALWQ 271
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 272 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 330
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 331 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 390
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 391 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
>sp|P45446|RORB_RAT Nuclear receptor ROR-beta OS=Rattus norvegicus GN=Rorb PE=1 SV=3
Length = 470
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 18/242 (7%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+E+D R+ ++++HL+TC +T +++ + + + A S +
Sbjct: 221 SEID---RIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQS-------------K 264
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
++ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 265 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP 324
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R
Sbjct: 325 LNNTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDR 383
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+
Sbjct: 384 AWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFK 442
Query: 296 MT 297
+
Sbjct: 443 QS 444
>sp|Q8HYL6|PPARA_PHACI Peroxisome proliferator-activated receptor alpha OS=Phascolarctos
cinereus GN=PPARA PE=2 SV=1
Length = 468
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSEVADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+KI+ + A + H T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKIKARIILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGFS L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSNLNLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+ERM+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IERMQESIVHVLQLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>sp|P45447|E78C_DROME Ecdysone-induced protein 78C OS=Drosophila melanogaster GN=Eip78C
PE=2 SV=3
Length = 866
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQ 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 616 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 667
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 668 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 726
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 727 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 785
Query: 243 LVERMRGKL-ENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
++ R R + E + + +L P+ + L L + +P+LR+L H L +M
Sbjct: 786 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHLDWLRMNWT 845
Query: 300 QQQL 303
+ +L
Sbjct: 846 KLRL 849
>sp|Q95N78|PPARA_CANFA Peroxisome proliferator-activated receptor alpha OS=Canis
familiaris GN=PPARA PE=2 SV=1
Length = 468
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 153/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEQDPEDAETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLKLHLQTNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>sp|P51449|RORG_HUMAN Nuclear receptor ROR-gamma OS=Homo sapiens GN=RORC PE=1 SV=2
Length = 518
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHVERLQIFQ 487
>sp|Q5RAP4|RORG_PONAB Nuclear receptor ROR-gamma OS=Pongo abelii GN=RORC PE=2 SV=1
Length = 518
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 33/254 (12%)
Query: 50 TEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLA 104
T +A A L + + ++ +V +++ +TC ++E +LR+ +RE T
Sbjct: 259 TPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQRSNIFSREEVT--------- 306
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV
Sbjct: 307 ------GYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAVEV 360
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI L
Sbjct: 361 VLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIAL 419
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLR 281
++++V+I+ R GL+ K VE+++ LE H L + H + +++ LP LR
Sbjct: 420 YTALVLINAYRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQ------SILAKLPPKGKLR 473
Query: 282 TLNQLHSEKLVAFQ 295
+L H E+L FQ
Sbjct: 474 SLCSQHVERLQIFQ 487
>sp|Q07869|PPARA_HUMAN Peroxisome proliferator-activated receptor alpha OS=Homo sapiens
GN=PPARA PE=1 SV=2
Length = 468
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 27/308 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---S 125
+K++ + +A +P + T C + TL L N +Q ++ ++ F
Sbjct: 220 MNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 126 ERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + ++
Sbjct: 278 CTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMN-KDGMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE L
Sbjct: 397 IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAAL 456
Query: 304 AAQQQQWH 311
Q+ +
Sbjct: 457 HPLLQEIY 464
>sp|P31396|HR3_DROME Probable nuclear hormone receptor HR3 OS=Drosophila melanogaster
GN=Hr46 PE=2 SV=1
Length = 487
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQM 296
L F++
Sbjct: 457 SLSKFKL 463
>sp|P51450|RORG_MOUSE Nuclear receptor ROR-gamma OS=Mus musculus GN=Rorc PE=1 SV=1
Length = 516
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 33/248 (13%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR-----AREHPTYTACPSTLACPLNPN 110
A L D + ++ V ++ +TC ++E +LR+ +RE T
Sbjct: 263 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQRTNLFSREEVT--------------- 304
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LL AG EV+LVR+
Sbjct: 305 SYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLTAGAMEVVLVRM- 363
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
C + N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+
Sbjct: 364 CRAYNANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVL 423
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP---DLRTLNQLH 287
I+ +R GL+ K VE ++ LE H L + H + L++ LP LR+L H
Sbjct: 424 INANRPGLQEKRRVEHLQYNLELAFHHHLCKTHRQG------LLAKLPPKGKLRSLCSQH 477
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 478 VEKLQIFQ 485
>sp|O35507|PPARA_CAVPO Peroxisome proliferator-activated receptor alpha OS=Cavia porcellus
GN=PPARA PE=2 SV=1
Length = 467
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 24/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEV-----LTCDRDSEGAETADLKSLAKRIYEAYLKN--FH 219
Query: 80 ADKIEPMLRRARE---HPTY---------TACPSTLACPLNPNSHPLQGQQELLQDFSER 127
+K++ + A + HP + TA + +A ++ + + +
Sbjct: 220 MNKVKARIILAGKTSSHPLFVIHDMETLCTAEKTLMAKVVSDGIRDKEAEVRIFHCCQCV 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++
Sbjct: 280 SVETVTNLTEFAKAIPGFASLDLNDQVTLLKYGVYEAIFTMLSSTMN-KDGMLVAYGHGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ F+FA + N L L D++I LF + ++ R GL N + +E
Sbjct: 339 ITREFLKNLRKPFCDMMEPKFNFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIDHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+M+ + ++L L NHP+ L +L+ L DLR L H++ LV TE L
Sbjct: 399 KMQEAIVHVLKLHLQSNHPDDTFLFPKLLQKLADLRQLVTEHAQ-LVQVIKTESDAALHP 457
Query: 306 QQQQWH 311
Q+ +
Sbjct: 458 LLQEIY 463
>sp|O18924|PPARG_MACMU Peroxisome proliferator-activated receptor gamma OS=Macaca mulatta
GN=PPARG PE=2 SV=1
Length = 505
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>sp|P37231|PPARG_HUMAN Peroxisome proliferator-activated receptor gamma OS=Homo sapiens
GN=PPARG PE=1 SV=3
Length = 505
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>sp|O62807|PPARG_PIG Peroxisome proliferator-activated receptor gamma OS=Sus scrofa
GN=PPARG PE=2 SV=1
Length = 504
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 256
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 257 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 316
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 317 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 375
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 376 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 435
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 436 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 495
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 496 LQEIYKD 502
>sp|Q4U3Q4|PPARG_CANFA Peroxisome proliferator-activated receptor gamma OS=Canis
familiaris GN=PPARG PE=2 SV=1
Length = 505
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>sp|O19052|PPARG_RABIT Peroxisome proliferator-activated receptor gamma OS=Oryctolagus
cuniculus GN=PPARG PE=2 SV=1
Length = 475
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPEASQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>sp|P10826|RARB_HUMAN Retinoic acid receptor beta OS=Homo sapiens GN=RARB PE=1 SV=2
Length = 455
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 42 QQSTNTKCTEKA-LAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACP 100
++++ +CTE + AELDD + + +AH +T P L + ++ T ++
Sbjct: 167 KETSKQECTESYEMTAELDD---LTEKIRKAHQET--------FPSLCQLGKYTTNSS-- 213
Query: 101 STLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 214 ---------ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAA 264
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DT
Sbjct: 265 CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDT 324
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E GL S+I +I R L V++++ L L + + P + ++ +++ + DL
Sbjct: 325 ETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDL 384
Query: 281 RTLNQLHSEKLVAFQM 296
R+++ +E+++ +M
Sbjct: 385 RSISAKGAERVITLKM 400
>sp|P22605|RARB_MOUSE Retinoic acid receptor beta OS=Mus musculus GN=Rarb PE=1 SV=1
Length = 482
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 251 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 310
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 311 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 370
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 371 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 427
>sp|P18516|RARG_NOTVI Retinoic acid receptor gamma OS=Notophthalmus viridescens GN=RARG
PE=2 SV=2
Length = 505
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 271 HRVQLDLGLWHKFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICT 330
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FAE+L L + DTE GL S+I +I
Sbjct: 331 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 390
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P + + ++ + DLR ++ +E+
Sbjct: 391 CGDRMDLEEPEKVDKLQEPLLEALKIYARRRRPNKPYMFPRMLMKITDLRGISTKGAERA 450
Query: 292 VAFQM 296
+ +M
Sbjct: 451 ITLKM 455
>sp|O88275|PPARG_RAT Peroxisome proliferator-activated receptor gamma OS=Rattus
norvegicus GN=Pparg PE=1 SV=2
Length = 505
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>sp|Q9W6B3|RARB_COTJA Retinoic acid receptor beta OS=Coturnix coturnix japonica GN=RARB
PE=2 SV=1
Length = 455
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>sp|P37230|PPARA_RAT Peroxisome proliferator-activated receptor alpha OS=Rattus
norvegicus GN=Ppara PE=1 SV=1
Length = 468
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLAKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVENKEAEVRFFHCCQCM 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHP 458
Query: 306 QQQQWH 311
Q+ +
Sbjct: 459 LLQEIY 464
>sp|P22448|RARB_CHICK Retinoic acid receptor beta OS=Gallus gallus GN=RARB PE=2 SV=2
Length = 455
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 224 LWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDT 283
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 284 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 343
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
V++++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 344 EPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 400
>sp|P23204|PPARA_MOUSE Peroxisome proliferator-activated receptor alpha OS=Mus musculus
GN=Ppara PE=1 SV=2
Length = 468
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLGKRIHEAYLKN--FN 219
Query: 80 ADKIEPMLRRARE---------HPTYTACPS--TLACPLNPNS-HPLQGQQELLQDFSER 127
+K++ + A + H T C + TL + N + +
Sbjct: 220 MNKVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEDKEAEVRFFHCCQCM 279
Query: 128 FSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMN-KDGMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAA 305
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHP 458
Query: 306 QQQQWH 311
Q+ +
Sbjct: 459 LLQEIY 464
>sp|O18971|PPARG_BOVIN Peroxisome proliferator-activated receptor gamma OS=Bos taurus
GN=PPARG PE=2 SV=1
Length = 505
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+L+ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>sp|P57797|PPARG_CRIGR Peroxisome proliferator-activated receptor gamma OS=Cricetulus
griseus GN=PPARG PE=2 SV=1
Length = 475
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 227
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNPNSH----PLQGQQE-----LLQDFSERF 128
K +L + + P ++L + PLQ Q + + Q R
Sbjct: 228 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 288 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 346
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 347 TREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 406
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 407 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 466
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 467 LQEIYKD 473
>sp|P37238|PPARG_MOUSE Peroxisome proliferator-activated receptor gamma OS=Mus musculus
GN=Pparg PE=1 SV=3
Length = 505
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 147/307 (47%), Gaps = 21/307 (6%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK ++LA + + E A D + + + +++ + T
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA------DLRALAKHLYDSYIKSFPLT 257
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP----NSHPLQGQQE-----LLQDFSERF 128
K +L + + P ++L + + PLQ Q + + Q R
Sbjct: 258 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 317
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + +I +
Sbjct: 318 VEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFM 376
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + + F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 377 TREFLKNLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED 436
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
++ L L L NHPE L A+++ + DLR + H + L + TE L
Sbjct: 437 IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPL 496
Query: 307 QQQWHGE 313
Q+ + +
Sbjct: 497 LQEIYKD 503
>sp|P49868|HR3_GALME Probable nuclear hormone receptor HR3 OS=Galleria mellonella GN=HR3
PE=2 SV=1
Length = 557
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+E+ D +++ + I++++EFAK IPGF L DDQ+ LLK+G FE+ +VRL+ + D
Sbjct: 348 EEMWLDCADKLTGMIQNIIEFAKLIPGFMKLSQDDQILLLKSGSFELAIVRLSRLID--V 405
Query: 178 NSMICLNGEVL--VRDSIHSSNAR--FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
N L G+V+ +R+ +H+ + R L+ +FD A+ + L L++TE+ L+ S+V++ P
Sbjct: 406 NREQVLYGDVVLPIRECVHARDPRDVTLVVGIFDAAKTIERLKLTETELALYQSLVLLWP 465
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEK 290
R G+R ++ + + H + NH + + L++ +P R L+ +H E
Sbjct: 466 ERHGVRGNPEIQCLFNMSMAAMRHEIESNHAPLKGDVTVLDTLLAKIPTFRELSLMHLEA 525
Query: 291 LVAFQ 295
L F+
Sbjct: 526 LCRFK 530
>sp|Q91392|RARGA_DANRE Retinoic acid receptor gamma-A OS=Danio rerio GN=rarga PE=1 SV=2
Length = 499
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 206 HRIQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICT 265
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 266 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V+R++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 326 CGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAERA 385
Query: 292 VAFQM 296
+ +M
Sbjct: 386 ITLKM 390
>sp|P28699|RARG_XENLA Retinoic acid receptor gamma OS=Xenopus laevis GN=rarg PE=2 SV=2
Length = 476
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+ + + ++
Sbjct: 247 LWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDT 306
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA++L L + DTE GL S+I +I R L
Sbjct: 307 MTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLICGDRMDLE 366
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E VE+++ L L + P++ + ++ + DLR ++ +E+ + ++
Sbjct: 367 EPEKVEKLQEPLLEALKFYARRRRPDKPYMFPRMLMKITDLRGISTKGAERAITLKL 423
>sp|P37234|PPARG_XENLA Peroxisome proliferator-activated receptor gamma OS=Xenopus laevis
GN=pparg PE=1 SV=1
Length = 477
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 142/293 (48%), Gaps = 25/293 (8%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLST-VVRAHLDTCAF 78
HNA +RFGR+P+ EK ++LA + + E A +QR+L+ + +++ +
Sbjct: 179 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESA-------DQRVLAKHLYDSYVKSFPL 230
Query: 79 TADKI--EPMLRRAREHP-TYT-------ACPSTLACPLNPNSHPLQGQQELLQDFSERF 128
T K P + R++ YT S P + G L S
Sbjct: 231 TKAKAPGHPDGQSHRQNSRGYTRHELADDGGGSDQGAVREPRAEQGGGDSNL-PALSVAL 289
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
+R++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 290 RGGVREITEFAKNIPGFVSLDLNDQVTLLKYGVHEIIFTMLASLMNK--DGVLVAEGQGF 347
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA R N L L D+++ +F +++++S R GL N + +E
Sbjct: 348 MTREFLKSLRKPFSDFMEPKFEFAIRFNSLELDDSDLAIFVAVIILSGDRPGLLNVKPIE 407
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ L L L NHP+ L A+L+ + DLR + H + L + TE
Sbjct: 408 DIQDSLLQALELQLKLNHPDSAQLFAKLLQKMTDLRQVVTEHVQLLQLIKKTE 460
>sp|P37232|PPARA_XENLA Peroxisome proliferator-activated receptor alpha OS=Xenopus laevis
GN=ppara PE=1 SV=1
Length = 474
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 22/305 (7%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + +++ D + + A+L
Sbjct: 175 HNA-IRFGRMPRSEKAKLKAEVLM-----CDQDVKDSQMADLLSLARLIYDAYLKNFNMN 228
Query: 80 ADKIEPMLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDF---SERF 128
K +L +P + T C + TL L N +Q ++ ++ F
Sbjct: 229 KVKARAILTGKASNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCTS 286
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + LA + + + ++ +
Sbjct: 287 VETVTELTEFAKSIPGFTELDLNDQVTLLKYGVYEAMFAMLASVMN-KDGMLVAYGNGFI 345
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S +M+ F+FA + N L L D+++ LF + ++ R GL N +E+
Sbjct: 346 TREFLKSLRKPIGDMMEPKFEFAMKFNALELDDSDLSLFVAALICCGDRPGLVNIPSIEK 405
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQ 306
M+ + ++L L NHP+ L +L+ + DLR L H++ + + TE L
Sbjct: 406 MQESIVHVLKLHLQSNHPDDSFLFPKLLQKMADLRQLVTEHAQLVQTIKKTETDAALHPL 465
Query: 307 QQQWH 311
Q+ +
Sbjct: 466 LQEIY 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,824,127
Number of Sequences: 539616
Number of extensions: 8381859
Number of successful extensions: 35651
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 34514
Number of HSP's gapped (non-prelim): 1014
length of query: 585
length of database: 191,569,459
effective HSP length: 123
effective length of query: 462
effective length of database: 125,196,691
effective search space: 57840871242
effective search space used: 57840871242
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)