Query psy3123
Match_columns 585
No_of_seqs 287 out of 1394
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:02:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xdk_B RAR-beta, retinoic acid 100.0 2.7E-42 9.2E-47 357.2 26.8 266 19-314 1-266 (303)
2 3vi8_A Peroxisome proliferator 100.0 1.9E-41 6.6E-46 346.4 21.9 254 59-312 6-271 (273)
3 1ovl_A Orphan nuclear receptor 100.0 1.2E-40 3.9E-45 339.0 24.6 264 12-312 1-267 (271)
4 1nq7_A Nuclear receptor ROR-be 100.0 2.1E-40 7.2E-45 332.6 25.8 237 60-311 4-244 (244)
5 3v3e_B Nuclear receptor subfam 100.0 5.8E-40 2E-44 332.6 25.9 231 62-312 13-245 (257)
6 3l0l_A Nuclear receptor ROR-ga 100.0 6.4E-41 2.2E-45 337.5 18.7 237 58-311 8-248 (248)
7 1fcy_A RAR-gamma-1, retinoic a 100.0 2.6E-39 9E-44 322.7 27.5 233 60-311 4-236 (236)
8 3b0t_A Vitamin D3 receptor; nu 100.0 8.6E-40 3E-44 329.3 21.7 241 59-311 8-254 (254)
9 1n83_A Nuclear receptor ROR-al 100.0 6.8E-39 2.3E-43 326.8 26.6 242 57-313 16-261 (270)
10 3ilz_A Thyroid hormone recepto 100.0 4.9E-39 1.7E-43 327.1 24.8 246 59-313 19-265 (267)
11 2o4j_A Vitamin D3 receptor; nu 100.0 4.9E-39 1.7E-43 331.2 23.8 245 58-314 10-260 (292)
12 3ipq_A Oxysterols receptor LXR 100.0 1.6E-38 5.4E-43 325.9 26.4 240 57-313 42-282 (283)
13 3dzy_D Peroxisome proliferator 100.0 1.1E-38 3.9E-43 344.0 26.5 288 17-312 115-417 (419)
14 1xvp_B Orphan nuclear receptor 100.0 9.8E-39 3.3E-43 320.2 24.1 238 59-311 6-246 (246)
15 3kmr_A Retinoic acid receptor 100.0 3.5E-38 1.2E-42 320.9 27.3 237 58-313 26-262 (266)
16 1pdu_A DHR38, nuclear hormone 100.0 7.8E-38 2.7E-42 314.5 23.8 225 63-312 14-240 (244)
17 2r40_D Ecdysone receptor, 20-h 100.0 1.5E-37 5.2E-42 315.9 26.2 237 57-313 24-263 (266)
18 3n00_A REV-ERBA-alpha; reverba 100.0 1.7E-38 5.7E-43 319.7 17.8 230 60-297 14-243 (245)
19 2nxx_E Ecdysone receptor (ECR, 100.0 2.9E-37 1E-41 310.5 26.4 235 57-313 10-245 (248)
20 2hc4_A Vitamin D receptor; alp 100.0 2.8E-37 9.4E-42 319.8 24.7 255 58-313 6-300 (302)
21 3ltx_A Estrogen receptor; cons 100.0 4.9E-37 1.7E-41 308.0 24.6 199 116-314 33-232 (243)
22 1lbd_A RXR_LBD, retinoid X rec 100.0 3.9E-37 1.3E-41 314.7 23.3 195 120-314 84-279 (282)
23 3cqv_A Nuclear receptor subfam 100.0 3.9E-37 1.3E-41 299.4 22.1 195 103-297 2-198 (199)
24 3u9q_A Peroxisome proliferator 100.0 1.4E-36 4.8E-41 309.7 26.1 251 60-312 3-268 (269)
25 1z5x_E Ecdysone receptor ligan 100.0 1.6E-36 5.4E-41 315.4 26.5 234 57-312 74-308 (310)
26 1nrl_A Orphan nuclear receptor 100.0 4.9E-37 1.7E-41 320.0 20.1 254 57-313 25-314 (316)
27 2e2r_A Estrogen-related recept 100.0 3.5E-36 1.2E-40 301.9 24.9 198 116-313 45-242 (244)
28 3k6p_A Steroid hormone recepto 100.0 2.4E-36 8.2E-41 304.0 20.8 197 116-312 45-245 (248)
29 1osh_A BIle acid receptor; nuc 100.0 3.1E-36 1E-40 299.3 19.2 224 59-312 7-231 (232)
30 3oll_A Estrogen receptor beta; 100.0 2.3E-35 8E-40 294.6 23.6 198 116-313 30-238 (240)
31 2ocf_A Estrogen receptor; estr 100.0 1.8E-35 6.1E-40 305.8 22.2 198 117-314 42-251 (298)
32 1g2n_A Ultraspiracle protein; 100.0 2.4E-35 8.3E-40 298.9 22.6 197 118-314 41-256 (264)
33 2iz2_A FTZ-F1 alpha, nuclear h 100.0 1.8E-35 6.3E-40 296.7 19.7 195 119-313 46-242 (243)
34 3plz_A FTZ-F1 related protein; 100.0 2.9E-35 9.9E-40 297.8 20.4 197 117-313 54-255 (257)
35 1yye_A ER-beta, estrogen recep 100.0 7.8E-35 2.7E-39 296.4 22.5 197 117-313 29-236 (268)
36 1ymt_A Steroidogenic factor 1; 100.0 6.7E-35 2.3E-39 292.5 20.1 194 120-313 46-244 (246)
37 1xpc_A Estrogen receptor; nucl 100.0 8.9E-35 3E-39 292.0 18.6 197 118-314 34-242 (248)
38 2nxx_A Ultraspiracle (USP, NR2 100.0 4.2E-35 1.5E-39 291.9 15.2 195 119-313 37-232 (235)
39 3dzy_A Retinoic acid receptor 100.0 5.2E-35 1.8E-39 319.3 15.6 191 122-312 271-462 (467)
40 1l2j_A Estrogen receptor beta; 100.0 2.7E-34 9.2E-39 292.8 19.5 198 117-314 57-265 (271)
41 3vhv_A Mineralocorticoid recep 100.0 8.7E-34 3E-38 287.4 22.7 198 116-313 37-243 (260)
42 3tx7_B Nuclear receptor subfam 100.0 2.4E-34 8.3E-39 303.7 18.3 197 117-313 149-350 (352)
43 1hg4_A Ultraspiracle; nuclear 100.0 3.3E-33 1.1E-37 285.0 25.4 198 117-314 45-270 (279)
44 2p1t_A Retinoic acid receptor 100.0 2.3E-33 7.8E-38 279.8 23.0 195 119-313 41-236 (240)
45 3up3_A Acedaf-12; ligand bindi 100.0 3.1E-34 1.1E-38 288.4 15.3 188 122-312 44-242 (243)
46 3f5c_B Nuclear receptor subfam 100.0 3.6E-34 1.2E-38 291.9 15.7 194 119-312 47-266 (268)
47 3p0u_A Nuclear receptor subfam 100.0 3.3E-34 1.1E-38 288.5 14.9 194 121-314 36-237 (249)
48 3cjw_A COUP transcription fact 100.0 8.3E-34 2.8E-38 284.1 17.6 195 120-314 38-234 (244)
49 3mnp_A Glucocorticoid receptor 100.0 4.5E-33 1.5E-37 282.5 22.5 197 116-312 39-243 (261)
50 3vhu_A Mineralocorticoid recep 100.0 4.9E-33 1.7E-37 287.1 21.7 199 115-313 70-277 (294)
51 1t7r_A Androgen receptor; nucl 100.0 6.6E-33 2.3E-37 282.2 21.0 197 116-312 46-251 (269)
52 3gyt_A Nuclear hormone recepto 100.0 2.2E-33 7.4E-38 282.7 15.9 187 122-313 44-243 (244)
53 1sqn_A PR, progesterone recept 100.0 1.2E-32 4.1E-37 279.1 19.4 195 116-312 38-243 (261)
54 1pzl_A Hepatocyte nuclear fact 100.0 9.4E-32 3.2E-36 266.6 20.7 193 120-312 42-235 (237)
55 1a6y_A Orphan nuclear receptor 92.1 0.043 1.5E-06 47.0 1.2 22 16-37 73-94 (94)
56 1cit_A NGFI-B, protein (orphan 83.9 0.25 8.6E-06 41.8 0.5 25 8-32 64-88 (89)
57 1dsz_A RAR-alpha, retinoic aci 60.5 2.3 7.8E-05 35.6 0.6 17 16-32 69-85 (86)
58 1ynw_B Retinoic acid receptor 58.3 2.8 9.7E-05 36.0 0.9 19 17-35 69-87 (99)
59 2ebl_A COUP transcription fact 40.0 4.6 0.00016 34.0 -0.7 16 16-31 72-87 (89)
60 1p22_C Beta-catenin, Pro2286; 38.5 8.5 0.00029 25.1 0.5 8 402-409 14-21 (26)
61 2han_A Protein ultraspiracle; 29.5 13 0.00046 31.3 0.5 17 16-32 75-91 (93)
62 1lo1_A Steroid hormone recepto 28.6 15 0.00051 31.4 0.6 14 9-22 69-82 (98)
63 1dsz_B RXR-alpha, retinoic aci 27.6 18 0.00062 30.0 0.9 15 16-30 70-84 (85)
64 2a66_A Orphan nuclear receptor 25.3 16 0.00055 32.0 0.2 14 9-22 74-87 (113)
65 1hcq_A Protein (estrogen recep 22.8 20 0.00068 29.7 0.3 13 17-29 70-82 (84)
66 3g9m_A Glucocorticoid receptor 22.5 13 0.00044 31.1 -1.0 16 17-32 68-83 (90)
67 3cbb_A HNF-4-alpha, hepatocyte 21.5 22 0.00077 28.9 0.3 12 17-28 66-77 (78)
68 1lo1_A Steroid hormone recepto 20.8 35 0.0012 29.0 1.4 16 16-31 69-84 (98)
69 1lbd_A RXR_LBD, retinoid X rec 20.8 21 0.00071 35.3 0.0 18 17-34 18-35 (282)
70 2a66_A Orphan nuclear receptor 20.8 29 0.00098 30.4 0.9 16 16-31 74-89 (113)
71 1kb2_A Vitamin D3 receptor; VD 20.3 20 0.00067 31.2 -0.3 19 17-35 72-90 (110)
No 1
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=100.00 E-value=2.7e-42 Score=357.20 Aligned_cols=266 Identities=25% Similarity=0.406 Sum_probs=207.6
Q ss_pred cCCCccccCCccchHHHHHHHHHhhcCCccchhHHHHhhhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCC
Q psy3123 19 YHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTA 98 (585)
Q Consensus 19 MSrdAVR~GRvPKreK~~l~~elq~~~~~~s~ed~~~~~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~ 98 (585)
|+++|||+||+|++++.... .... . .....+++.+++.|++||.++++.... . ..|..
T Consensus 1 M~rEaVr~~R~~~~~~~~~~------~~~~--~---~~~~~~~~~li~~l~~a~~~~~~~~~~-~----------~~~~~ 58 (303)
T 1xdk_B 1 MSKESVRNDRNKKKKEPSKQ------ECTE--S---YEMTAELDDLTEKIRKAHQETFPSLCQ-L----------GKYTT 58 (303)
T ss_dssp ----------------------------------------CCTHHHHHHHHHHHHHHSCCSSS-S----------CCBCC
T ss_pred CCHHHHhhcccccccccccc------CCCC--C---CCCCHHHHHHHHHHHHHHHHhCccHhh-h----------cccCC
Confidence 78889999999987543110 0000 0 111224567999999999998764321 0 01111
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCc
Q psy3123 99 CPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178 (585)
Q Consensus 99 ~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~ 178 (585)
.. ........+.+.|+.++++++..++.+|+|||+||+|.+|+.+||++|||++|+|+++|++|+++....+
T Consensus 59 ~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~ 130 (303)
T 1xdk_B 59 NS--------SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 130 (303)
T ss_dssp CT--------TCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTTT
T ss_pred CC--------CccccccchHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccCC
Confidence 00 0011122346789999999999999999999999999999999999999999999999999999988889
Q ss_pred eeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy3123 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHV 258 (585)
Q Consensus 179 ~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~y 258 (585)
.|+|++|..+.++.+...+...+++.+++|+.+|++|++|++||+||+||+||+||++||++...|+++|++|..+|++|
T Consensus 131 ~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y 210 (303)
T 1xdk_B 131 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY 210 (303)
T ss_dssp EEECTTCBEEEHHHHHHTTTGGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHH
T ss_pred eEEecCCceecHHHHhhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765555578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 259 LNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 259 i~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
|..+||+++.||++||++|+.||+++..+.|.++++++++.+++++|+.|||....
T Consensus 211 ~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 266 (303)
T 1xdk_B 211 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 266 (303)
T ss_dssp HHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCCCC
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999998654
No 2
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=100.00 E-value=1.9e-41 Score=346.38 Aligned_cols=254 Identities=25% Similarity=0.366 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcC-CCCcCC--------CCCCCCCCCCCCCC-CccchHHHHHHHHHhh
Q psy3123 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HPTYTA--------CPSTLACPLNPNSH-PLQGQQELLQDFSERF 128 (585)
Q Consensus 59 ~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~-~~~~~~--------~~~~~~c~l~~~~~-~~~~r~e~~~~~~e~~ 128 (585)
.|.+.++..|.+||.++|++|.++.+....+... .+.+.. .+....|.+.+.+. ....+..+|++|+..+
T Consensus 6 ~~~~~l~~~~~~a~~~~~~~t~~~a~~~~~~~~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (273)
T 3vi8_A 6 ADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTS 85 (273)
T ss_dssp -CHHHHHHHHHHHHHHHCSCCHHHHHHHHC-------CEEECSHHHHHHHHHHHSGGGGSCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcccccCCCcCCCCCceeechHHHHhhhhhhhhccCCCCCCCchhHHHHHHHHHHHH
Confidence 4677899999999999999999998876554322 112111 12223455554432 3345677999999999
Q ss_pred hHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhh-cccchHHHHHHHHH
Q psy3123 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSI-HSSNARFLMDSMFD 207 (585)
Q Consensus 129 ~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l-~~~~~~~li~~m~~ 207 (585)
+..|+.+|+|||+||||.+|+.+||++|||++|+|++++++|++|+.++..+.+.++........ .......+++.+++
T Consensus 86 ~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (273)
T 3vi8_A 86 VETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFD 165 (273)
T ss_dssp HHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETTEEEETTTTEEEEHHHHHHSCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCCccchHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776666655544332221 23456688899999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHH
Q psy3123 208 FAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLH 287 (585)
Q Consensus 208 f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h 287 (585)
|+.+|++|++|++||+|||||+|||||++||.+...|+++|++|..+|++||..+||+++.||++||++||+||+|+..|
T Consensus 166 ~~~~~~~L~ld~~E~alLkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l~~~~ 245 (273)
T 3vi8_A 166 FAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEH 245 (273)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-ccccchhHHHHHHhcC
Q psy3123 288 SEKLVAFQM-TEQQQQLAAQQQQWHG 312 (585)
Q Consensus 288 ~E~L~~~kl-~~~i~l~~Ll~Emf~~ 312 (585)
.+.++.|+. .+.+++++|+.|||.+
T Consensus 246 ~e~l~~~k~~~~~~~~~~Ll~Emf~d 271 (273)
T 3vi8_A 246 AQLVQIIKKTESDAALHPLLQEIYRD 271 (273)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHTT
T ss_pred HHHHHHHHccCCCCCccHHHHHHHHh
Confidence 999998876 5678999999999974
No 3
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=100.00 E-value=1.2e-40 Score=338.96 Aligned_cols=264 Identities=22% Similarity=0.365 Sum_probs=197.5
Q ss_pred ccccccccCCCccccCCccchHHHHHHHHHhhcCCccchhHHHHhhhhhHHHHHHHHHHHhhhcccChh-hhhhhhhhhh
Q psy3123 12 ILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTA-DKIEPMLRRA 90 (585)
Q Consensus 12 M~kE~VGMSrdAVR~GRvPKreK~~l~~elq~~~~~~s~ed~~~~~l~d~~~Li~~Iv~Ah~~tc~~T~-ekvr~~l~~~ 90 (585)
|+||+|+.++..+|+||+|++.|... + . .+. ..+..+|+.+++||.++++.+. .+.
T Consensus 1 M~kE~Vr~dr~~~~r~~~~~~~~~~~--~---~-~~~----------~~~~~li~~l~~a~~~~~~~~~~~~~------- 57 (271)
T 1ovl_A 1 MVKEVVRTDSLKGRRGRLPSKPKSPQ--E---P-SPP----------SPPVSLISALVRAHVDSNPAMTSLDY------- 57 (271)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHTSCCTTSCBC-------
T ss_pred CCccccccCccccCCCCCCCCCCCcc--c---C-CCC----------CCHHHHHHHHHHHHHHhCCCcchhhh-------
Confidence 99999999999999999999877632 0 0 000 1124689999999999887541 111
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHH
Q psy3123 91 REHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170 (585)
Q Consensus 91 ~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A 170 (585)
..|.. .+.+.......+.|+.++++++..+..+|+|||+||+|.+|+.+||++|||++|+|+++|+.|
T Consensus 58 ---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a 125 (271)
T 1ovl_A 58 ---SRFQA---------NPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLA 125 (271)
T ss_dssp ---TTCCC---------C--------CHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hccCC---------CCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHH
Confidence 11110 011111234578899999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHH
Q psy3123 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250 (585)
Q Consensus 171 ~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer 250 (585)
+++....+.+++++|..++++.... +..++++.+++|+.+|++|++|++||+||+||+|||| ++||++...|+++|++
T Consensus 126 ~~s~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~~-~~gL~~~~~v~~lq~~ 203 (271)
T 1ovl_A 126 YRSNPVEGKLIFCNGVVLHRLQCVR-GFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTE-RHGLKEPKRVEELQNK 203 (271)
T ss_dssp HHSBTTTTEEECTTSBEEEHHHHTT-TTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSSC-CTTCSCHHHHHHHHHH
T ss_pred HHhcCCCCeEEeeCCeeecHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcHHHHHHHHHH
Confidence 9998888999999999988876532 3456889999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHHHHhcC--CCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcC
Q psy3123 251 LENMLMHVLNQNH--PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 251 ~l~aL~~yi~~~~--p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~ 312 (585)
|..+|++||..++ ++++.||++||++||.||++++.+.|.++++++++.+++++|+.|||.+
T Consensus 204 ~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~~ 267 (271)
T 1ovl_A 204 IVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLD 267 (271)
T ss_dssp HHHHHHHHHHGGGTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 9999999999874 6889999999999999999999999999999999999999999999863
No 4
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=100.00 E-value=2.1e-40 Score=332.56 Aligned_cols=237 Identities=30% Similarity=0.514 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhh
Q psy3123 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFA 139 (585)
Q Consensus 60 d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFA 139 (585)
+++.+++.|++||.+||+|+.++++.+..+....+ ..+ ..+..++.+.|+.+++.+++.++.+|+||
T Consensus 4 ~~~~l~~~i~~ah~~~~~~~~e~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~Vewa 70 (244)
T 1nq7_A 4 EIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYE--------EIK-----AYQSKSREALWQQCAIQITHAIQYVVEFA 70 (244)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHTTCBCCHH--------HHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHhhccCCCCChh--------hhc-----ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998877744311100 000 00124567899999999999999999999
Q ss_pred hcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCCh
Q psy3123 140 KRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219 (585)
Q Consensus 140 K~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde 219 (585)
|+||||.+|+.+||++|||++|+|+++++.|++|+...+.+++ +|..++++.++..+..++++.+++|+.+|++|++|+
T Consensus 71 K~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~ 149 (244)
T 1nq7_A 71 KRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTE 149 (244)
T ss_dssp HTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEEEE-TTEEEEGGGGGGGSCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEeE-CCEEecHHHHhhcChHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999 999999888876667788999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc
Q psy3123 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299 (585)
Q Consensus 220 ~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~ 299 (585)
+||+|||||+|||||++||++...|+++|++|..+|++||..+||+++ ||++||++||.||+++..+.|.++++++.+.
T Consensus 150 ~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~ 228 (244)
T 1nq7_A 150 EEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIPTITAVCNLHGEKLQVFKQSHP 228 (244)
T ss_dssp HHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999888 9999999999999999999999999999876
Q ss_pred c----chhHHHHHHhc
Q psy3123 300 Q----QQLAAQQQQWH 311 (585)
Q Consensus 300 i----~l~~Ll~Emf~ 311 (585)
. ++++|+.|||+
T Consensus 229 ~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 229 DIVNTLFPPLYKELFN 244 (244)
T ss_dssp HHHHHTSCHHHHHHHC
T ss_pred ccccCCCChHHHHhhC
Confidence 5 79999999985
No 5
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=100.00 E-value=5.8e-40 Score=332.63 Aligned_cols=231 Identities=23% Similarity=0.366 Sum_probs=202.1
Q ss_pred HHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhhhc
Q psy3123 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKR 141 (585)
Q Consensus 62 ~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFAK~ 141 (585)
..+|..+++||.++++.+.+- ....|.. ...+.......+.|++|++.++..|+.+|+|||+
T Consensus 13 ~~li~~lv~Ah~~t~p~~~~~---------d~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~i~~iV~wAK~ 74 (257)
T 3v3e_B 13 ANLLTSLVRAHLDSGPSTAKL---------DYSKFQE---------LVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEK 74 (257)
T ss_dssp CHHHHHHHHHHHHTSCCGGGC---------BCTTCCS---------CCSCCCSCCCHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCcccccc---------ccccccC---------cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 358899999999999865431 1111110 0112223456788999999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCChhH
Q psy3123 142 IPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE 221 (585)
Q Consensus 142 LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde~E 221 (585)
||||.+|+.+||++|||+||+|+++|++|++|+...+.++|.+|..++++.... +.+++++.+++|+.+|++|++|++|
T Consensus 75 iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~L~ld~~E 153 (257)
T 3v3e_B 75 IPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCAR-GFGDWIDSILAFSRSLHSLLVDVPA 153 (257)
T ss_dssp STTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHHHH-HHTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHHHh-hhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999999999999999999999999999998877643 3457889999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHh--cCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc
Q psy3123 222 IGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQ--NHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299 (585)
Q Consensus 222 ~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~--~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~ 299 (585)
|+|||||+||| |++||.+...|+++|+++..+|++||.. ++|+++.||++||++||+||+|++.|.|.|+++|+.+.
T Consensus 154 ~a~LkAivLfs-d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~ 232 (257)
T 3v3e_B 154 FACLSALVLIT-DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDL 232 (257)
T ss_dssp HHHHHHHHHSS-CCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999998 9999999999999999999999999974 47889999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcC
Q psy3123 300 QQQLAAQQQQWHG 312 (585)
Q Consensus 300 i~l~~Ll~Emf~~ 312 (585)
+++++|+.|||.+
T Consensus 233 ~~~~~Ll~Emf~~ 245 (257)
T 3v3e_B 233 VPPPPIIDKIFMD 245 (257)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHh
Confidence 9999999999973
No 6
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=100.00 E-value=6.4e-41 Score=337.47 Aligned_cols=237 Identities=27% Similarity=0.457 Sum_probs=210.2
Q ss_pred hhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHH
Q psy3123 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVE 137 (585)
Q Consensus 58 l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVe 137 (585)
..+++.+++.|++||.+||+|+.+++..+..+.. +. ... ...+..++.++|+++++.+++.++.+|+
T Consensus 8 ~~~~~~l~~~i~~ah~~t~~~~~e~~~~~~~~~~-----~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~Ve 74 (248)
T 3l0l_A 8 LTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIF-----SR---EEV-----TGYQRKSMWEMWERCAHHLTEAIQYVVE 74 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHTTTCBC-----CH---HHH-----HHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCcHHHHHHHcccCC-----Cc---ccc-----ccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999999988854321 00 000 0001236789999999999999999999
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCC
Q psy3123 138 FAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHL 217 (585)
Q Consensus 138 FAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqL 217 (585)
|||+||||.+|+.+||++|||++|+|+++|+.|++|+..++.+++ +|.++..+..+..+..++++.+++|+.+|++|++
T Consensus 75 waK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l 153 (248)
T 3l0l_A 75 FAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFF-EGKYGGMELFRALGCSELISSIFDFSHSLSALHF 153 (248)
T ss_dssp HHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGGGSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEe-CCCcccHHHHhhccHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999888888 7888777777766677899999999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q psy3123 218 SDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297 (585)
Q Consensus 218 de~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~ 297 (585)
|++||+||+||+|||||++||++...|+++|++|..+|++||..+|+ +.||++||++ |.||++++.|.|.|+++|+.
T Consensus 154 d~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~-p~LR~i~~~~~e~l~~~k~~ 230 (248)
T 3l0l_A 154 SEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK-GKLRSLCSQHVERLQIFQHL 230 (248)
T ss_dssp CHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT-THHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc-HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999885 5799999999 99999999999999999999
Q ss_pred cc----cchhHHHHHHhc
Q psy3123 298 EQ----QQQLAAQQQQWH 311 (585)
Q Consensus 298 ~~----i~l~~Ll~Emf~ 311 (585)
+. .++++|+.|||+
T Consensus 231 ~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 231 HPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp CHHHHHHHSCHHHHHHHC
T ss_pred CcccccCCCChHHHHhhC
Confidence 84 578999999995
No 7
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=100.00 E-value=2.6e-39 Score=322.66 Aligned_cols=233 Identities=28% Similarity=0.440 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhh
Q psy3123 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFA 139 (585)
Q Consensus 60 d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFA 139 (585)
+++.+++.+++||.++++.. .++. .|.. . .........+.+.|+.+++++++.++.+|+||
T Consensus 4 ~~~~li~~~~~a~~~~~~~~-~~~~----------~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~Vewa 64 (236)
T 1fcy_A 4 QLEELITKVSKAHQETFPSL-CQLG----------KYTT---N-----SSADHRVQLDLGLWDKFSELATKCIIKIVEFA 64 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCCG-GGSC----------CBCC---C-----TTCSSCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCH-Hhhc----------ccCC---C-----CCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999986531 1111 1110 0 00111123467899999999999999999999
Q ss_pred hcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCCh
Q psy3123 140 KRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219 (585)
Q Consensus 140 K~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde 219 (585)
|+||||.+|+.+||++|||++|+|+++++.|++++...+++++++|..+.++.....+...+++.+++|+.+|++|++|+
T Consensus 65 K~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ld~ 144 (236)
T 1fcy_A 65 KRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDD 144 (236)
T ss_dssp HTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTCBEEEHHHHHHHTTGGGHHHHHHHHHHHGGGCCCH
T ss_pred hcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccCCCeEEeCCCceecHHHHHHcCcHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999888999999999998887765555567889999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc
Q psy3123 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299 (585)
Q Consensus 220 ~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~ 299 (585)
+||+|||||+||+||++||++...|+++|++|..+|++||..+||+++.||++||++||.||+++..+.|.++++++.+.
T Consensus 145 ~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~ 224 (236)
T 1fcy_A 145 TETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIP 224 (236)
T ss_dssp HHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhc
Q psy3123 300 QQQLAAQQQQWH 311 (585)
Q Consensus 300 i~l~~Ll~Emf~ 311 (585)
+++++|+.|||+
T Consensus 225 ~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 225 GPMPPLIREMLE 236 (236)
T ss_dssp SCCCHHHHHHHC
T ss_pred CCccHHHHHHhC
Confidence 999999999984
No 8
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=100.00 E-value=8.6e-40 Score=329.32 Aligned_cols=241 Identities=25% Similarity=0.372 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHh
Q psy3123 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEF 138 (585)
Q Consensus 59 ~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeF 138 (585)
.+++.+|+.|++||.++|+++.+++..+... .. ....++. .....++.+.|+++++++++.++.+|+|
T Consensus 8 ~e~~~li~~lv~ah~~~~~~~~~~~~~~~~~------~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~Vew 75 (254)
T 3b0t_A 8 EEQQRIIAILLDAHHKTYDPTYSDFCQFRPP------VR---VNDGGGS---VTLELSQLSMLPHLADLVSYSIQKVIGF 75 (254)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCTTGGGSCCC------CC---CCCTTCC---HHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcCHHHHhhccCC------Cc---cccCCCc---cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999988876655210 00 0000000 0012234567999999999999999999
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecC-Ceeecchhhcc-cchHHHHHHHHHHHHHHhhcC
Q psy3123 139 AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN-GEVLVRDSIHS-SNARFLMDSMFDFAERLNGLH 216 (585)
Q Consensus 139 AK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~n-G~~i~rd~l~~-~~~~~li~~m~~f~~~L~~Lq 216 (585)
||+||||.+|+.+||++|||++|+|+++|+.|++|+...+.++++| |..+.++.... +....+++.+++|+.+|++|+
T Consensus 76 aK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 155 (254)
T 3b0t_A 76 AKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLN 155 (254)
T ss_dssp HHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHTTC
T ss_pred hhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccCCCeEEecCCCeeeeHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999987 66666665543 333478899999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3123 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP--EQMNLCAELISMLPDLRTLNQLHSEKLVAF 294 (585)
Q Consensus 217 Lde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p--~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~ 294 (585)
+|++||+|||||+|||||++||++...|+++|++|..+|++||..+|| +++.||++||++||.||+++..+.|.++++
T Consensus 156 ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~ 235 (254)
T 3b0t_A 156 LHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCL 235 (254)
T ss_dssp CCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred hh--ccccchhHHHHHHhc
Q psy3123 295 QM--TEQQQQLAAQQQQWH 311 (585)
Q Consensus 295 kl--~~~i~l~~Ll~Emf~ 311 (585)
++ .+..++++|+.|||+
T Consensus 236 ~~~~~~~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 236 SFQPECSMKLTPLVLEVFG 254 (254)
T ss_dssp TTSTTHHHHSCHHHHHHHC
T ss_pred hccccCCCCCChHHHHhcC
Confidence 98 667789999999985
No 9
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=100.00 E-value=6.8e-39 Score=326.75 Aligned_cols=242 Identities=30% Similarity=0.488 Sum_probs=210.4
Q ss_pred hhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHH
Q psy3123 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVV 136 (585)
Q Consensus 57 ~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vV 136 (585)
...+++.+++.|++||.+||+++.++++.+..+... +.... ..+...+.++|+.+++.+++.++.+|
T Consensus 16 ~~~e~~~li~~l~~ah~~t~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~V 82 (270)
T 1n83_A 16 GPAELEHLAQNISKSHLETCQYLREELQQITWQTFL--------QEEIE-----NYQNKQREVMWQLCAIKITEAIQYVV 82 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHTTTCBCC--------HHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCCC--------hhhhc-----ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999988776432110 00000 00123467899999999999999999
Q ss_pred HhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcC
Q psy3123 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLH 216 (585)
Q Consensus 137 eFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~Lq 216 (585)
+|||+||||.+|+.+||++|||++|+|+++++.|++|+...+.+++ +|.++.++..+..+...+++.+++|+.+|++|+
T Consensus 83 ewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ 161 (270)
T 1n83_A 83 EFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDVFKSLGCEDFISFVFEFGKSLCSMH 161 (270)
T ss_dssp HHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGGGSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEe-CCccccHHHHHhcCHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999998888887 688888777766566789999999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q psy3123 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296 (585)
Q Consensus 217 Lde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl 296 (585)
+|++||+|||||+|||||++||++...|+++|++|..+|++||..+|+ ++.||++||++||.||+++..+.|.++++++
T Consensus 162 ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~ 240 (270)
T 1n83_A 162 LTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKVSTLRALCGRHTEKLMAFKA 240 (270)
T ss_dssp CCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ccc----cchhHHHHHHhcCC
Q psy3123 297 TEQ----QQQLAAQQQQWHGE 313 (585)
Q Consensus 297 ~~~----i~l~~Ll~Emf~~~ 313 (585)
.+. +++++|+.|||...
T Consensus 241 ~~~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 241 IYPDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp HCHHHHHHHSCHHHHHHC---
T ss_pred cCcccccCCcCHHHHHHhCCC
Confidence 875 47999999999865
No 10
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=100.00 E-value=4.9e-39 Score=327.06 Aligned_cols=246 Identities=20% Similarity=0.361 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHh
Q psy3123 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEF 138 (585)
Q Consensus 59 ~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeF 138 (585)
.++..+|+.+.+||..+|++...-.+. ..|..... ...+..+.+.....+.+.|+.+++.++..++.+|+|
T Consensus 19 ~~~~~~i~~~~~ah~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Vew 89 (267)
T 3ilz_A 19 PEEWDLIHIATEAHRSTNAQGSHWKQR--------RKFLPDDI-GQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDF 89 (267)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCSCSTTT--------SEECCTTS-SCCCCBCCTTSCCBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCcCcchHHHHHH--------HHhhhhhh-hhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355679999999999999764321100 00100000 001112223334567889999999999999999999
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCC
Q psy3123 139 AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLS 218 (585)
Q Consensus 139 AK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLd 218 (585)
||+||+|.+|+.+||++|||++|+|+++|+.|++|+...+.+++++|..+.++.+...+...+++.+++|+.+|++|++|
T Consensus 90 aK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld 169 (267)
T 3ilz_A 90 AKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLD 169 (267)
T ss_dssp HHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTTTBEEETTTEEECHHHHHHTTTTHHHHHHHHHHHHHGGGCCC
T ss_pred HhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCeeecHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999998899999999999998887556667889999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q psy3123 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298 (585)
Q Consensus 219 e~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~ 298 (585)
++||+||+||+|||||++||++...|+++|++|..+|++||..+||+++.||++||++||.||+++..|.|.++++++.+
T Consensus 170 ~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~ 249 (267)
T 3ilz_A 170 DTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLHMKVEX 249 (267)
T ss_dssp HHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CCSS
T ss_pred HHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccch-hHHHHHHhcCC
Q psy3123 299 QQQQ-LAAQQQQWHGE 313 (585)
Q Consensus 299 ~i~l-~~Ll~Emf~~~ 313 (585)
..++ ++|+.|||+..
T Consensus 250 ~~~~~~~Ll~Em~~~~ 265 (267)
T 3ilz_A 250 PTELFPPLFLEVFEDQ 265 (267)
T ss_dssp CGGGSCHHHHHHTCCS
T ss_pred CccCCCcHHHHHhcCC
Confidence 8887 99999999864
No 11
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=100.00 E-value=4.9e-39 Score=331.25 Aligned_cols=245 Identities=26% Similarity=0.374 Sum_probs=208.2
Q ss_pred hhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHH
Q psy3123 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVE 137 (585)
Q Consensus 58 l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVe 137 (585)
..+++.+|..|++||.++|+++.+++..+... ... .... .+. ....++.+.|+.+++.+++.++.+|+
T Consensus 10 t~eq~~li~~lv~ah~~t~~~~~~~~~~~~~~-----~~~-~~~~--~p~----~~~~~~~~~~~~l~~~~~~~l~~~Ve 77 (292)
T 2o4j_A 10 SEEQQHIIAILLDAHHKTYDPTYADFRDFRPP-----VRM-DGST--GSV----TLDLSPLSMLPHLADLVSYSIQKVIG 77 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTCGGGGGSCCC-----CCC-------------------CCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCC-----CCC-Cccc--Ccc----cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999988776654210 000 0000 000 11234567899999999999999999
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecC-Ceeecchhhcc-cchHHHHHHHHHHHHHHhhc
Q psy3123 138 FAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN-GEVLVRDSIHS-SNARFLMDSMFDFAERLNGL 215 (585)
Q Consensus 138 FAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~n-G~~i~rd~l~~-~~~~~li~~m~~f~~~L~~L 215 (585)
|||+||||.+|+.+||++|||++|+|+++|+.|++|+..++.+++++ |..+.++.... +....+++.+++|+.+|++|
T Consensus 78 wAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L 157 (292)
T 2o4j_A 78 FAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKL 157 (292)
T ss_dssp HHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCCeEEcHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999984 77777766553 33347889999999999999
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3123 216 HLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP--EQMNLCAELISMLPDLRTLNQLHSEKLVA 293 (585)
Q Consensus 216 qLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p--~~p~RF~kLLllLp~LR~Ls~~h~E~L~~ 293 (585)
++|++||+|||||+|||||++||++...|+++|++|..+|++||..+|| +++.||++||++|+.||+++..+.+.+++
T Consensus 158 ~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~ 237 (292)
T 2o4j_A 158 NLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRS 237 (292)
T ss_dssp CCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred Hhhc--cccchhHHHHHHhcCCC
Q psy3123 294 FQMT--EQQQQLAAQQQQWHGED 314 (585)
Q Consensus 294 ~kl~--~~i~l~~Ll~Emf~~~~ 314 (585)
++++ +..++++|+.|||..+.
T Consensus 238 ~~~~~~~~~~~~~Ll~Eml~~~~ 260 (292)
T 2o4j_A 238 LSFQPENSMKLTPLVLEVFGNEI 260 (292)
T ss_dssp HHHSHHHHTTSCHHHHHHHCCC-
T ss_pred hhccccCCCChhHHHHHHHcCCc
Confidence 9984 46789999999998654
No 12
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=100.00 E-value=1.6e-38 Score=325.88 Aligned_cols=240 Identities=23% Similarity=0.423 Sum_probs=201.3
Q ss_pred hhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHH
Q psy3123 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVV 136 (585)
Q Consensus 57 ~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vV 136 (585)
...+++.+|+.|+.||.+.+..+.++...+.. .+..+.+.....+.+.|..+++++...+..+|
T Consensus 42 lt~e~~~li~~lv~a~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V 105 (283)
T 3ipq_A 42 LSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTP----------------WPMAPDPHSREARQQRFAHFTELAIVSVQEIV 105 (283)
T ss_dssp CCHHHHHHHHHHHHHHC-------------CC----------------CC--------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCChhHHHhcCC----------------CCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999888765554332211 01111112233568899999999999999999
Q ss_pred HhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcc-cchHHHHHHHHHHHHHHhhc
Q psy3123 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGL 215 (585)
Q Consensus 137 eFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~-~~~~~li~~m~~f~~~L~~L 215 (585)
+|||+||+|.+|+.+||++|||++|+|+++|+.|++|+...+.+.|++|..+.++.+.. +....+++.+++|+.+|++|
T Consensus 106 ewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L 185 (283)
T 3ipq_A 106 DFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNEL 185 (283)
T ss_dssp HHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETTTEEECHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCceecHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999998887753 33357889999999999999
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy3123 216 HLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295 (585)
Q Consensus 216 qLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~k 295 (585)
++|++||+||+||+|||||++||++...|+++|++|..+|..||..+||+++.||++||++||.||+++..+.|.+++++
T Consensus 186 ~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k 265 (283)
T 3ipq_A 186 QLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALR 265 (283)
T ss_dssp TCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHhcCC
Q psy3123 296 MTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 296 l~~~i~l~~Ll~Emf~~~ 313 (585)
+.+ ..+++|+.|||+-+
T Consensus 266 ~~~-~~~~~Ll~Em~~~~ 282 (283)
T 3ipq_A 266 LQD-KKLPPLLSEIWDVH 282 (283)
T ss_dssp HTT-CCCCHHHHHHHCC-
T ss_pred CCC-CCCChHHHHHhcCC
Confidence 886 58999999999843
No 13
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=1.1e-38 Score=344.00 Aligned_cols=288 Identities=25% Similarity=0.423 Sum_probs=221.7
Q ss_pred cccCCCccccCCccchHHHHHHHHHhhcCCccchhHHHHhhhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcC-CCC
Q psy3123 17 ARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HPT 95 (585)
Q Consensus 17 VGMSrdAVR~GRvPKreK~~l~~elq~~~~~~s~ed~~~~~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~-~~~ 95 (585)
|||++++||++|+|+++|.++.++...... .......+...++..+..+|..+++++..+...++..... .+.
T Consensus 115 ~GM~~~~vq~~R~~~~~k~~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~p 188 (419)
T 3dzy_D 115 VGMSHNAIRFGRMPQAEKEKLLAEISSDID------QLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSP 188 (419)
T ss_dssp TTCCGGGCCCSCCTTTTGGGSTTTTTSTTT------TSCSTTHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHCCSSSCCC
T ss_pred cccchhheeccccccccccccccccccccc------CCCCchhhHHHHHHHHHHhhhccCCccchhccccccCCCCCCCC
Confidence 799999999999999888766554321111 1112234556678889999999999988776655442111 011
Q ss_pred cCC--------CCCCCCCCCCCCC--CCccchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHH
Q psy3123 96 YTA--------CPSTLACPLNPNS--HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165 (585)
Q Consensus 96 ~~~--------~~~~~~c~l~~~~--~~~~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~Ell 165 (585)
+.. .+....+...+.. .........|..+.......|+.+|+|||+||||.+|+.+||++|||++|+|++
T Consensus 189 ~~~~~~~~l~~ae~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell 268 (419)
T 3dzy_D 189 FVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEII 268 (419)
T ss_dssp EEECSHHHHHCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHH
Confidence 100 0001111111100 011223457888888888999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCceeEecCCe-eecchhhcc--cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHH
Q psy3123 166 LVRLACMFDSQTNSMICLNGE-VLVRDSIHS--SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242 (585)
Q Consensus 166 lLr~A~r~~~~~~~ll~~nG~-~i~rd~l~~--~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~ 242 (585)
+|++|+.++. +.+++.+|. ++.++.++. ...+++++.|++|+.+|++|+||++||+||+||+||+||++||.+..
T Consensus 269 ~L~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~ 346 (419)
T 3dzy_D 269 YTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVK 346 (419)
T ss_dssp HHHHGGGBCS--SEEEEGGGTEEEEHHHHHSSSGGGSGGGHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHH
T ss_pred HHHHHHHhcC--CCceeecCcccccHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 9999987765 455555554 456666542 23457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhc-cccchhHHHHHHhcC
Q psy3123 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT-EQQQQLAAQQQQWHG 312 (585)
Q Consensus 243 ~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~-~~i~l~~Ll~Emf~~ 312 (585)
.|+++|++++.+|++|+..+||+++.||++||++||+||+|+..|.+.+++|+.. +..++++|+.|||.+
T Consensus 347 ~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~i~~~~~~~l~~~k~~~~~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 347 PIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988754 577899999999974
No 14
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=100.00 E-value=9.8e-39 Score=320.19 Aligned_cols=238 Identities=18% Similarity=0.298 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHh
Q psy3123 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEF 138 (585)
Q Consensus 59 ~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeF 138 (585)
.+++.+|++|++||.++|.++.+++..+...... | .......+.......|+++++++++.++.+|+|
T Consensus 6 ~e~~~li~~l~~ah~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~Vew 73 (246)
T 1xvp_B 6 KEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHL---F---------IHHQPLPTLAPVLPLVTHFADINTFMVLQVIKF 73 (246)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGGGGGGCCCGGG---T---------CCSSCCCTTSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHhcCCchhc---c---------cccCCCCCcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999998887665332111 1 000111112346788999999999999999999
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcc-cchHHHHHHHHHHHHHHhhcCC
Q psy3123 139 AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHL 217 (585)
Q Consensus 139 AK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~-~~~~~li~~m~~f~~~L~~LqL 217 (585)
||+||||.+|+.+||++|||++|+|++++++|++|+...+.+ +.++..+.++.... +....+++.+++|+.+|++|++
T Consensus 74 aK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~l 152 (246)
T 1xvp_B 74 TKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQL 152 (246)
T ss_dssp HTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEE-ECSSCEECHHHHHHHTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccCeE-eeCCeeecHHHHHHccccHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999998877775 45565666665442 3334788899999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy3123 218 SDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN--HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295 (585)
Q Consensus 218 de~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~--~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~k 295 (585)
|++||+|||||+|||||++||++...|+++|++|..+|++||..+ +++++.||++||++||.||+++..+.|.++++
T Consensus 153 d~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~L~~Lr~i~~~~~e~l~~~- 231 (246)
T 1xvp_B 153 QEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHI- 231 (246)
T ss_dssp CHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999954 67889999999999999999999999999986
Q ss_pred hccccchhHHHHHHhc
Q psy3123 296 MTEQQQQLAAQQQQWH 311 (585)
Q Consensus 296 l~~~i~l~~Ll~Emf~ 311 (585)
.+.+++++|+.|||+
T Consensus 232 -~~~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 232 -QGLSAMMPLLQEICS 246 (246)
T ss_dssp -TTHHHHCHHHHHHTC
T ss_pred -hCCCCccHHHHHhcC
Confidence 577899999999985
No 15
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=100.00 E-value=3.5e-38 Score=320.86 Aligned_cols=237 Identities=26% Similarity=0.433 Sum_probs=207.2
Q ss_pred hhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHH
Q psy3123 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVE 137 (585)
Q Consensus 58 l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVe 137 (585)
..++..+|+.|++||.++.+. .+++. .|.. . .........+.++|+.+++.+++.++.+|+
T Consensus 26 t~~~~~li~~l~~a~~~~~~~-~~~~~----------~~~~---~-----~~~~~~~~~~~~~~~~~~e~~~~~l~~~Ve 86 (266)
T 3kmr_A 26 TPEVGELIEKVRKAHQETFPA-LCQLG----------KYTT---N-----NSSEQRVSLDIDLWDKFSELSTKCIIKTVE 86 (266)
T ss_dssp -CHHHHHHHHHHHHHHTTCCC-GGGSC----------CBCC---C-----TTCSSCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHhCCc-HHHHh----------hccC---C-----CCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999998752 22221 1210 0 000111223578999999999999999999
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCC
Q psy3123 138 FAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHL 217 (585)
Q Consensus 138 FAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqL 217 (585)
|||+||+|.+|+.+||++|||++|+|+++|+.|++++...+.++++||..+.++.....+...+.+.+++|+.+|++|++
T Consensus 87 waK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~l 166 (266)
T 3kmr_A 87 FAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEM 166 (266)
T ss_dssp HHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTSBEEEHHHHHHHTTGGGHHHHHHHHHHHGGGCC
T ss_pred HHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCcccchHHHhhcchHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998889999999999988887654556678889999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q psy3123 218 SDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297 (585)
Q Consensus 218 de~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~ 297 (585)
|++||+|||||+||+||++||++...|+++|++|..+|++||..+||+++.||++||++||.||+++..+.|.+++++++
T Consensus 167 d~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~i~~~~~e~l~~~k~~ 246 (266)
T 3kmr_A 167 DDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKME 246 (266)
T ss_dssp CHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHhcCC
Q psy3123 298 EQQQQLAAQQQQWHGE 313 (585)
Q Consensus 298 ~~i~l~~Ll~Emf~~~ 313 (585)
+..++++|+.|||...
T Consensus 247 ~~~~~~~Ll~Eml~~~ 262 (266)
T 3kmr_A 247 IPGSMPPLIQEMLENS 262 (266)
T ss_dssp SSSCCCHHHHHHHC--
T ss_pred CCCCcchHHHHHhcCC
Confidence 9999999999999853
No 16
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=7.8e-38 Score=314.54 Aligned_cols=225 Identities=21% Similarity=0.374 Sum_probs=200.9
Q ss_pred HHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhhhcC
Q psy3123 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRI 142 (585)
Q Consensus 63 ~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFAK~L 142 (585)
++++.+++||.+||+.... ..|.... .....+.+.|++++++++..++.+|+|||+|
T Consensus 14 ~~~~~~~~a~~~~~~~~~~------------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~VewAK~l 70 (244)
T 1pdu_A 14 SLITALVRSHVDTTPDPSC------------LDYSHYE-----------EQSMSEADKVQQFYQLLTSSVDVIKQFAEKI 70 (244)
T ss_dssp CHHHHHHHHHHHTSCCGGG------------CBCTTTS-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccccCcCccC------------CCccccc-----------ccccchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4889999999999986321 0111100 0234578999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCChhHH
Q psy3123 143 PGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222 (585)
Q Consensus 143 PgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde~E~ 222 (585)
|||.+|+.+||++|||++|+|+++++.|+++....+.+++++|..+.++.... +..++++.+++|+.+|++|++|++||
T Consensus 71 P~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~l~~L~ld~~E~ 149 (244)
T 1pdu_A 71 PGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLR-SFGEWLNDIMEFSRSLHNLEIDISAF 149 (244)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHHHH-HHTTHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEeeCCeeecHHHHHh-HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999998888999999999988876543 34467888999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccc
Q psy3123 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP--EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ 300 (585)
Q Consensus 223 ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p--~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i 300 (585)
+|||||+||| |++||++...|+++|++|..+|++||..+|| +++.||++||++||.||+++..+.|.++++++++.+
T Consensus 150 ~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~ 228 (244)
T 1pdu_A 150 ACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLV 228 (244)
T ss_dssp HHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 9999999998 9999999999999999999999999998886 589999999999999999999999999999999999
Q ss_pred chhHHHHHHhcC
Q psy3123 301 QQLAAQQQQWHG 312 (585)
Q Consensus 301 ~l~~Ll~Emf~~ 312 (585)
++++|+.|||..
T Consensus 229 ~~~~Ll~Eml~~ 240 (244)
T 1pdu_A 229 PAPALIENMFVT 240 (244)
T ss_dssp CCCHHHHHTTTC
T ss_pred CchHHHHHHHhC
Confidence 999999999975
No 17
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=100.00 E-value=1.5e-37 Score=315.91 Aligned_cols=237 Identities=20% Similarity=0.376 Sum_probs=209.3
Q ss_pred hhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHH
Q psy3123 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVV 136 (585)
Q Consensus 57 ~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vV 136 (585)
...+++.+|+.|+.||.+++.++.+++..+.... ..+ . ........|++++++++..++.+|
T Consensus 24 lt~eq~~li~~lv~a~~~~~~~~~~~~~~~~~~~---~~~-----------~----~~~~~~~~~~~l~~~~~~~l~~~V 85 (266)
T 2r40_D 24 LTANQKSLIARLVWYQEGYEQPSEEDLKRVTQTW---QSD-----------E----DDEDSDMPFRQITEMTILTVQLIV 85 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCCHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCHHHHhhhcccc---CCC-----------C----ccchhhccHHHHHHHHHHHHHHHH
Confidence 3446778999999999999888888776653200 000 0 011123469999999999999999
Q ss_pred HhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcC
Q psy3123 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLH 216 (585)
Q Consensus 137 eFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~Lq 216 (585)
+|||+||+|.+|+.+||++|||++|+|+++|+.|++|+...++++|++|..++++..+..+..++++.+++|+.+|++|+
T Consensus 86 ewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ 165 (266)
T 2r40_D 86 EFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMM 165 (266)
T ss_dssp HHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHhhcCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999888775555688999999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcC---CCchhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3123 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH---PEQMNLCAELISMLPDLRTLNQLHSEKLVA 293 (585)
Q Consensus 217 Lde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~---p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~ 293 (585)
+|++||+|||||+||| |++||++...|+++|++|..+|++||..+| |+++.||++||++||.||+++..+.|.+++
T Consensus 166 ld~~E~~lLkAivL~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~ 244 (266)
T 2r40_D 166 MDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCIS 244 (266)
T ss_dssp CCHHHHHHHHHHHHTS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhheeec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999998 788999999999999999999999999999
Q ss_pred HhhccccchhHHHHHHhcCC
Q psy3123 294 FQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 294 ~kl~~~i~l~~Ll~Emf~~~ 313 (585)
+++.+ .++++|+.|||+.+
T Consensus 245 ~~~~~-~~~~~Ll~Em~~~~ 263 (266)
T 2r40_D 245 LKLKN-RKLPPFLEEIWDVA 263 (266)
T ss_dssp HHHTT-CCCCHHHHHHTTCC
T ss_pred HHhcC-CCccHHHHHHhCCC
Confidence 99987 68999999999854
No 18
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=319.72 Aligned_cols=230 Identities=37% Similarity=0.636 Sum_probs=175.3
Q ss_pred hHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHhh
Q psy3123 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFA 139 (585)
Q Consensus 60 d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeFA 139 (585)
....+|+.|.+||..+|+|+-+++...... +. .....+...+......+..++|+.+++.+++.++.+|+||
T Consensus 14 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~------~~--~~~~~~~p~~~~~~~~s~~~~~~~~~~~~~~~l~~~VewA 85 (245)
T 3n00_A 14 TVEDVISQVARAHREIFTYAHDKLGSSPGN------FN--ANHASGSPYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFA 85 (245)
T ss_dssp CHHHHHHHHHHHHHHHC----------------------------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHhhccchhhhccCCCCC------CC--CcccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999998877644221 10 0000011111122345667999999999999999999999
Q ss_pred hcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCCh
Q psy3123 140 KRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSD 219 (585)
Q Consensus 140 K~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde 219 (585)
|+||+|.+|+.+||++|||++|+|+++|+.|++|+...+.+.|++|..+.++.+...+..++++.+++|+.+|++|++|+
T Consensus 86 K~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~ 165 (245)
T 3n00_A 86 KHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTE 165 (245)
T ss_dssp HHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCSCC--------------CCGGGTTHHHHHHHHHHHHHHHHTCCCH
T ss_pred HcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCeecHHHHhhccHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999998888776667789999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q psy3123 220 TEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297 (585)
Q Consensus 220 ~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~ 297 (585)
+||+||+||+|||||++||++...|+++|++|..+|++||..+||+++.||++||++||.||++++.|.|.|+++|+.
T Consensus 166 ~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~Lp~LR~l~~~~~E~L~~~k~~ 243 (245)
T 3n00_A 166 EELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVD 243 (245)
T ss_dssp HHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHTTCEEEEEC-
T ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988864
No 19
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=2.9e-37 Score=310.45 Aligned_cols=235 Identities=23% Similarity=0.400 Sum_probs=209.0
Q ss_pred hhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHH
Q psy3123 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVV 136 (585)
Q Consensus 57 ~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vV 136 (585)
...+++.+|++|+.||.+++.++.+++..+... +.. ........|.++++++...++.+|
T Consensus 10 l~~e~~~li~~l~~a~~~~~~~~~~~~~~~~~~----------------~~~----~~~~~~~~~~~l~~~~~~~l~~~V 69 (248)
T 2nxx_E 10 ISPEQEELIHRLVYFQNEYEHPSEEDVKRIINQ----------------PMD----GEDQCDVRFRHITEITILTVQLIV 69 (248)
T ss_dssp CCTTHHHHHHHHHHHHHHTSSCCHHHHHTTCC-------------------C----CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC----------------CCc----cccchhhHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999888776544211 000 012245779999999999999999
Q ss_pred HhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcC
Q psy3123 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLH 216 (585)
Q Consensus 137 eFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~Lq 216 (585)
+|||+||+|.+|+.+||++|||++|+|+++++.|++|+...+.+++++|..++++..+..+..++++.+++|+.+|++|+
T Consensus 70 ewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ 149 (248)
T 2nxx_E 70 EFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYSMR 149 (248)
T ss_dssp HHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999889999999999998887765555688899999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy3123 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295 (585)
Q Consensus 217 Lde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~-p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~k 295 (585)
+|++||+||+||+||+ |++||++...|+++|++|..+|++||..+| ++++.||++||++||.||+++..+.|.+++++
T Consensus 150 ld~~E~~lLkAivL~~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~ 228 (248)
T 2nxx_E 150 VDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLK 228 (248)
T ss_dssp CCHHHHHHHHHHHHTC-CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 999999999999999999999999999998 46899999999999999999999999999999
Q ss_pred hccccchhHHHHHHhcCC
Q psy3123 296 MTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 296 l~~~i~l~~Ll~Emf~~~ 313 (585)
+.+ .++++|+.|||+.+
T Consensus 229 ~~~-~~~~~Ll~Em~~~~ 245 (248)
T 2nxx_E 229 LKN-KKLPPFLAEIWDVD 245 (248)
T ss_dssp HTT-CCCCHHHHHHTTTT
T ss_pred CCC-CCccHHHHHHhcCc
Confidence 875 68999999999754
No 20
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=100.00 E-value=2.8e-37 Score=319.82 Aligned_cols=255 Identities=24% Similarity=0.390 Sum_probs=207.8
Q ss_pred hhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCC---Cc-----------------CCCCCC------------CCC
Q psy3123 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHP---TY-----------------TACPST------------LAC 105 (585)
Q Consensus 58 l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~---~~-----------------~~~~~~------------~~c 105 (585)
.++|+.+|..++.||.+|.+.+..++..++...+... .. ...+.. ..+
T Consensus 6 t~eq~~~i~~l~~a~~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (302)
T 2hc4_A 6 SDEQMQIINSLVEAHHKTYDDSYSDFVRFRPPVREGPVTRSASRAASLHSLSDASSDSFNHSPESVDTKLNFSNLLMMYQ 85 (302)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCGGGGGSCCCCC----------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcccccccCCCCcCCCCCccccCCccccccccccccccccCcccccccccccccccccc
Confidence 3567889999999999999999988877753111100 00 000000 000
Q ss_pred CCCCCCC----CccchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeE
Q psy3123 106 PLNPNSH----PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181 (585)
Q Consensus 106 ~l~~~~~----~~~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll 181 (585)
... .+. ....+..+|++++++++..++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|++|+...+.+.
T Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l 164 (302)
T 2hc4_A 86 DSG-SPDSSEEDQQSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSWS 164 (302)
T ss_dssp ---------------CCTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEE
T ss_pred ccC-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 000 000 022456789999999999999999999999999999999999999999999999999999999888998
Q ss_pred ecC-Ceeecchhhcc-cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy3123 182 CLN-GEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVL 259 (585)
Q Consensus 182 ~~n-G~~i~rd~l~~-~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi 259 (585)
+.+ +..+.++.... +...++++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~ 244 (302)
T 2hc4_A 165 CGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYI 244 (302)
T ss_dssp CSSSTTEECHHHHHTTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeecHHHHHHccCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 885 44455555442 3336788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccc--cchhHHHHHHhcCC
Q psy3123 260 NQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ--QQQLAAQQQQWHGE 313 (585)
Q Consensus 260 ~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~--i~l~~Ll~Emf~~~ 313 (585)
..+||+++.||++||++|+.||+++..+.|.++++++.+. +++++|+.|||..+
T Consensus 245 ~~~~p~~~~RF~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~~~ 300 (302)
T 2hc4_A 245 RIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGSE 300 (302)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHSSSC
T ss_pred HHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccHHHHHHHcCC
Confidence 9999999999999999999999999999999999998754 68999999999854
No 21
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=100.00 E-value=4.9e-37 Score=307.95 Aligned_cols=199 Identities=17% Similarity=0.268 Sum_probs=188.1
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhh-ccCCCceeEecCCeeecchhhc
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM-FDSQTNSMICLNGEVLVRDSIH 194 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r-~~~~~~~ll~~nG~~i~rd~l~ 194 (585)
.+...|+.+++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|++ ++.+.+.+++++|..+.++...
T Consensus 33 ~~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~ 112 (243)
T 3ltx_A 33 TKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWS 112 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhhc
Confidence 467899999999999999999999999999999999999999999999999999986 6666678999999999988876
Q ss_pred ccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy3123 195 SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELI 274 (585)
Q Consensus 195 ~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLL 274 (585)
..+..++++.+++|+.+|++|++|++||+|||||+||+||++||++...|+++|++|..+|++||..+||+++.||++||
T Consensus 113 ~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL 192 (243)
T 3ltx_A 113 TVEMTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVL 192 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 55667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 275 SMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 275 llLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
++||.||+++..+.|.++++++++.+++++|+.|||..+.
T Consensus 193 ~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 232 (243)
T 3ltx_A 193 LLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDAQD 232 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999654
No 22
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=100.00 E-value=3.9e-37 Score=314.69 Aligned_cols=195 Identities=27% Similarity=0.384 Sum_probs=180.8
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchH
Q psy3123 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNAR 199 (585)
Q Consensus 120 ~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~ 199 (585)
.+..+++++.+.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++....+.+++++|..+.++.....+..
T Consensus 84 ~~~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (282)
T 1lbd_A 84 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVG 163 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSEEECTTSCEEEHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCceEecCCcccccchhhhcccH
Confidence 56899999999999999999999999999999999999999999999999998766667888999999888877654455
Q ss_pred HHHHH-HHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhH
Q psy3123 200 FLMDS-MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278 (585)
Q Consensus 200 ~li~~-m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp 278 (585)
.+.+. +.+|+.+|++|++|++||+||+||+||+||++||++...|+++|++|+.+|++||..+||+++.||++||++||
T Consensus 164 ~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~ 243 (282)
T 1lbd_A 164 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 243 (282)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 55555 45799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 279 DLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 279 ~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
.||.++..+.|.++++++++.+++++|+.|||....
T Consensus 244 ~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~~~ 279 (282)
T 1lbd_A 244 ALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 279 (282)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999998643
No 23
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=100.00 E-value=3.9e-37 Score=299.43 Aligned_cols=195 Identities=44% Similarity=0.791 Sum_probs=181.5
Q ss_pred CCCCCCCCCC--CccchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCcee
Q psy3123 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180 (585)
Q Consensus 103 ~~c~l~~~~~--~~~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~l 180 (585)
++||++..+. +...+.+.|+.+++.+++.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|++|+...+.+
T Consensus 2 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~~ 81 (199)
T 3cqv_A 2 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTV 81 (199)
T ss_dssp CCCTTSSCSCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEETTTTEE
T ss_pred CCCCCCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCCCCeE
Confidence 4677776654 45678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeeecchhhcccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy3123 181 ICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260 (585)
Q Consensus 181 l~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~ 260 (585)
.++||..+.++.++..+..++++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||.
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~ 161 (199)
T 3cqv_A 82 TFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIM 161 (199)
T ss_dssp ECTTSCEEEHHHHHHTTCCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCeecHHHHHhcCcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876555567889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q psy3123 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297 (585)
Q Consensus 261 ~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~ 297 (585)
.+||+++.||++||++||.||++++.+.|.++++|+.
T Consensus 162 ~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 162 KNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVH 198 (199)
T ss_dssp HHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999864
No 24
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=100.00 E-value=1.4e-36 Score=309.73 Aligned_cols=251 Identities=24% Similarity=0.393 Sum_probs=207.2
Q ss_pred hHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCC-CCcCCC--------CCCCCCCCCCCC--CCccchHHHHHHHHHhh
Q psy3123 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREH-PTYTAC--------PSTLACPLNPNS--HPLQGQQELLQDFSERF 128 (585)
Q Consensus 60 d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~-~~~~~~--------~~~~~c~l~~~~--~~~~~r~e~~~~~~e~~ 128 (585)
+.+.++..|.+||.++++.|+.+.+.++.+.... +.|... +....|...+.. .......+.|..|....
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 82 (269)
T 3u9q_A 3 DLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 82 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHTTCSSSCCCEEECSHHHHHHHCSCCC------------CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCcHHHHHHHhhccccCCCCccHHHHHHHHhhhhhhhhccCCCcCCccchhhHHHHHHHHHHH
Confidence 5677889999999999999999999998653322 122211 111222222211 11234567899998888
Q ss_pred hHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCee-ecchhhcc--cchHHHHHHH
Q psy3123 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV-LVRDSIHS--SNARFLMDSM 205 (585)
Q Consensus 129 ~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~-i~rd~l~~--~~~~~li~~m 205 (585)
...|+.+|+|||+||||.+|+.+||++|||++|+|+++|+.|++++. +.+++.+|.. +.++.++. .+..++++.+
T Consensus 83 ~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 160 (269)
T 3u9q_A 83 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPFGDFMEPK 160 (269)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET--TEEEETTTTEEEEHHHHHHSCTTGGGSSHHH
T ss_pred HHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC--CCeEEeCCCccccHHHHHHhhhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999998875 4677777764 56665542 3455678889
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHH
Q psy3123 206 FDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285 (585)
Q Consensus 206 ~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~ 285 (585)
++|+.+|++|++|++||+||+||+|||||++||++...|+++|++|..+|++||..+||+++.||++||++||.||+++.
T Consensus 161 ~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~Lp~LR~i~~ 240 (269)
T 3u9q_A 161 FEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVT 240 (269)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-ccccchhHHHHHHhcC
Q psy3123 286 LHSEKLVAFQM-TEQQQQLAAQQQQWHG 312 (585)
Q Consensus 286 ~h~E~L~~~kl-~~~i~l~~Ll~Emf~~ 312 (585)
.|.+.+++++. .+..++++|+.|||.+
T Consensus 241 ~~~~~l~~~k~~~~~~~~~~Ll~Em~~~ 268 (269)
T 3u9q_A 241 EHVQLLQVIKKTETDMSLHPLLQEIYKD 268 (269)
T ss_dssp HHHHHHHHHHHSCSSCCCCHHHHHHHSC
T ss_pred HHHHHHHHHhCcCCCCCcCHHHHHHHhh
Confidence 99999988886 4578999999999974
No 25
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=100.00 E-value=1.6e-36 Score=315.36 Aligned_cols=234 Identities=22% Similarity=0.386 Sum_probs=209.5
Q ss_pred hhhhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHH
Q psy3123 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVV 136 (585)
Q Consensus 57 ~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vV 136 (585)
...+++.+|+.|+.||..++.++.+++..+... +.. ........|..+++++...++.+|
T Consensus 74 ls~eq~~lI~~lv~a~~~~~~p~~~~~~~~~~~----------------p~~----~~~~~~~~~~~l~el~~~~l~~~V 133 (310)
T 1z5x_E 74 ITPEQEELIHRLVYFQNEYEHPSPEDIKRIVNA----------------APE----EENVAEERFRHITEITILTVQLIV 133 (310)
T ss_dssp CCCTTHHHHHHHHHHHHHTSSCCHHHHHHHHTT----------------CCT----TCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCHHHHHhhccC----------------CCc----cccchhhHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999888877655321 000 011245679999999999999999
Q ss_pred HhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHHHHHHHHHHHHHhhcC
Q psy3123 137 EFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLH 216 (585)
Q Consensus 137 eFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~li~~m~~f~~~L~~Lq 216 (585)
+|||+||||.+|+.+||++|||++|+|+++|++|++++...+.|+|++|..+.++..+..+..++++.+++|+.+|++|+
T Consensus 134 ewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~~~~~~l~~L~ 213 (310)
T 1z5x_E 134 EFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHMCAMK 213 (310)
T ss_dssp HHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeCCCccccHHHHHhcchhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999889999999999998887765556688999999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy3123 217 LSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH-PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295 (585)
Q Consensus 217 Lde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~-p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~k 295 (585)
+|++||+||+||+||+ |++||++...|+++|++|..+|+.||..+| ++++.||++||++||.||+++..+.|.+++++
T Consensus 214 ld~~E~alLkAIvLf~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~~ 292 (310)
T 1z5x_E 214 VDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCFSLK 292 (310)
T ss_dssp CCHHHHHHHHHHHHTC-CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 999999999999999999999999999988 57899999999999999999999999999999
Q ss_pred hccccchhHHHHHHhcC
Q psy3123 296 MTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 296 l~~~i~l~~Ll~Emf~~ 312 (585)
+.+ .++++|+.|||+.
T Consensus 293 ~~~-~~~~~Ll~Eml~~ 308 (310)
T 1z5x_E 293 LKN-RKVPSFLEEIWDV 308 (310)
T ss_dssp HTT-CCCCHHHHHHHTC
T ss_pred cCC-CCchHHHHHHHcC
Confidence 875 5899999999974
No 26
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=100.00 E-value=4.9e-37 Score=319.96 Aligned_cols=254 Identities=20% Similarity=0.323 Sum_probs=208.6
Q ss_pred hhhhHHHHHHHHHHHhhhcccChhhhhhhhh-hhhcCCCC------------------------cCCC-C------CCCC
Q psy3123 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPML-RRAREHPT------------------------YTAC-P------STLA 104 (585)
Q Consensus 57 ~l~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l-~~~~~~~~------------------------~~~~-~------~~~~ 104 (585)
...+++.+|+.++.||.++.+.+.+++..+. ++...... +... . ....
T Consensus 25 ls~eq~~~i~~l~~a~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
T 1nrl_A 25 LTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSV 104 (316)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCTTCTTCCSCCCCCC--------------CHHHHHHHHHHHHHHTTSCEEEEEECTTSCE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCchhhhcccccCCcccccCCCCcccccccccccccccccccccccccCCcccccccccc
Confidence 4557788999999999999999988876664 10000000 0000 0 0000
Q ss_pred CCCCCCCCCc-cchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEec
Q psy3123 105 CPLNPNSHPL-QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183 (585)
Q Consensus 105 c~l~~~~~~~-~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~ 183 (585)
+...+..... ..+.+.|+.+++.+++.|+.+|+|||+||+|.+|+.+||++|||++|+|+++|++|++|+...+.|++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~~ 184 (316)
T 1nrl_A 105 WNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECG 184 (316)
T ss_dssp EEEECCCSCSSGGGGTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEET
T ss_pred ccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEC
Confidence 0000011111 124678999999999999999999999999999999999999999999999999999999888888875
Q ss_pred CCeeecchhhcccchH-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Q psy3123 184 NGEVLVRDSIHSSNAR-FLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262 (585)
Q Consensus 184 nG~~i~rd~l~~~~~~-~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~ 262 (585)
+ ..+.++.+ ..+.. .+++.|++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||..+
T Consensus 185 ~-~~~~~~~~-~~g~~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 262 (316)
T 1nrl_A 185 R-LSYCLEDT-AGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECN 262 (316)
T ss_dssp T-EEEEECCC-SSCHHHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-EeecHHHH-hccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 66776666 33344 778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 263 HP--EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 263 ~p--~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
|| +++.||++||++||.||+++..+.|.+++++..+. ++++|+.|||..+
T Consensus 263 ~p~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml~~~ 314 (316)
T 1nrl_A 263 RPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELFGIT 314 (316)
T ss_dssp CCSGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHTTCC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHcCC
Confidence 99 78999999999999999999999999999998876 8999999999754
No 27
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=100.00 E-value=3.5e-36 Score=301.92 Aligned_cols=198 Identities=16% Similarity=0.257 Sum_probs=187.3
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcc
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS 195 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~ 195 (585)
+....|+++++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++....+.+++++|..++++..+.
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~~~~~ 124 (244)
T 2e2r_A 45 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKL 124 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCEEEETTEEECHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeEEecCCEeecHHHhhh
Confidence 45678999999999999999999999999999999999999999999999999999987777889999999988887665
Q ss_pred cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy3123 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELIS 275 (585)
Q Consensus 196 ~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLl 275 (585)
.+..++++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||..+||+++.||++||+
T Consensus 125 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~ 204 (244)
T 2e2r_A 125 AGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLM 204 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 55567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 276 MLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 276 lLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
+||.||+++..+.|.++++++++.+++++|+.|||..+
T Consensus 205 ~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 242 (244)
T 2e2r_A 205 TLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 242 (244)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCc
Confidence 99999999999999999999999999999999999864
No 28
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=100.00 E-value=2.4e-36 Score=303.97 Aligned_cols=197 Identities=19% Similarity=0.260 Sum_probs=182.1
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcc
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS 195 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~ 195 (585)
++...|+.+++++++.+..+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++....+.+++++|..+.++..+.
T Consensus 45 ~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 124 (248)
T 3k6p_A 45 GHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARA 124 (248)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCEEEETTEEECHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEeCCCcccChhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999987777999999999998887665
Q ss_pred cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCC----CchhHHH
Q psy3123 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP----EQMNLCA 271 (585)
Q Consensus 196 ~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p----~~p~RF~ 271 (585)
.+..++++.+++|+.+|++|++|++||+||+||+|||||++||++...|+++|++|..+|++||..+|| +++.||+
T Consensus 125 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~ 204 (248)
T 3k6p_A 125 AGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAG 204 (248)
T ss_dssp TTTTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-HH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHH
Confidence 555678899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcC
Q psy3123 272 ELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 272 kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~ 312 (585)
+||++||.||+++..+.|.++++++++.+++++|+.|||+.
T Consensus 205 ~LL~~Lp~Lr~l~~~~~e~l~~~k~~g~~~i~~Ll~Eml~~ 245 (248)
T 3k6p_A 205 RLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEA 245 (248)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHCC-CCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999973
No 29
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=100.00 E-value=3.1e-36 Score=299.32 Aligned_cols=224 Identities=25% Similarity=0.422 Sum_probs=187.2
Q ss_pred hhHHHHHHHHHHHhhhcccChhhhhhhhhhhhcCCCCcCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhhHHHHHHHHh
Q psy3123 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEF 138 (585)
Q Consensus 59 ~d~~~Li~~Iv~Ah~~tc~~T~ekvr~~l~~~~~~~~~~~~~~~~~c~l~~~~~~~~~r~e~~~~~~e~~~~~I~~vVeF 138 (585)
.++..+++.|++||.+++....+. +.+.. ...+..+.|..+++++...+..+|+|
T Consensus 7 ~e~~~li~~l~~a~~~~~~~~~~~-~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~vew 61 (232)
T 1osh_A 7 PDQQTLLHFIMDSYNKQRMPQEIT-NKILK------------------------EEFSAEENFLILTEMATNHVQVLVEF 61 (232)
T ss_dssp HHHHHHHHHHHHHHTSCCCC----------------------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChHHH-HHHhh------------------------ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356689999999999977544321 11100 01123567999999999999999999
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcc-cchHHHHHHHHHHHHHHhhcCC
Q psy3123 139 AKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHL 217 (585)
Q Consensus 139 AK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~-~~~~~li~~m~~f~~~L~~LqL 217 (585)
||+||||.+|+.+||++|||++|+|+++++.|++|+... ..+|..+.++..+. +....+++.+++|+.+|++|++
T Consensus 62 aK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~l 137 (232)
T 1osh_A 62 TKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKL----PSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKM 137 (232)
T ss_dssp HHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHHHHHHHHTSSCCTTTHHHHHHHHHHHHTTCC
T ss_pred HhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCcc----CCCCceecHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999886542 12344455554442 2234578889999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q psy3123 218 SDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297 (585)
Q Consensus 218 de~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~ 297 (585)
|++||+||+||+|||||++||++...|+++|++|..+|++||..+||+++.||++||++||.||.++..+.|.++++++
T Consensus 138 d~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~k~- 216 (232)
T 1osh_A 138 TQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV- 216 (232)
T ss_dssp CHHHHHHHHHHHHTCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccchhHHHHHHhcC
Q psy3123 298 EQQQQLAAQQQQWHG 312 (585)
Q Consensus 298 ~~i~l~~Ll~Emf~~ 312 (585)
+..++++|+.|||+.
T Consensus 217 ~~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 217 NDHKFTPLLCEIWDV 231 (232)
T ss_dssp TTCCCCHHHHHHHTC
T ss_pred CCCCCChHHHHHhcC
Confidence 688999999999974
No 30
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=100.00 E-value=2.3e-35 Score=294.63 Aligned_cols=198 Identities=19% Similarity=0.251 Sum_probs=183.8
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhc-
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH- 194 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~- 194 (585)
+...+|+.+++.+++.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++....+.+++++|..+.++...
T Consensus 30 ~~~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 109 (240)
T 3oll_A 30 TEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKC 109 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETBEEEEGGGGGG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeeEecCCcccchhhHHH
Confidence 4678999999999999999999999999999999999999999999999999999998777789999999998887654
Q ss_pred ccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCc-------HHHHHHHHHHHHHHHHHHHHhcC---C
Q psy3123 195 SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN-------KELVERMRGKLENMLMHVLNQNH---P 264 (585)
Q Consensus 195 ~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd-------~~~Ve~lQer~l~aL~~yi~~~~---p 264 (585)
..+..++++.+++|+.+|++|++|++||+|||||+|||||++||++ .++|+++|++|..+|+.||..++ |
T Consensus 110 ~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~ 189 (240)
T 3oll_A 110 VEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQ 189 (240)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 4456678899999999999999999999999999999999999864 57899999999999999998764 5
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 265 EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 265 ~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
+++.||++||++||.||+++..+.|.+++++++|.+++++|+.|||+.+
T Consensus 190 ~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~ 238 (240)
T 3oll_A 190 QQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 238 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHC
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999999999999999854
No 31
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=305.82 Aligned_cols=198 Identities=18% Similarity=0.305 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhc-c
Q psy3123 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-S 195 (585)
Q Consensus 117 r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~-~ 195 (585)
...+|..+++++.+.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|+++....+.|+|++|..+.++... .
T Consensus 42 ~~~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~ 121 (298)
T 2ocf_A 42 EASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCV 121 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSTTEEEEETTEEEEHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccCCceeecCCceechhhhhhh
Confidence 567899999999999999999999999999999999999999999999999999998888899999999998887643 4
Q ss_pred cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCC--------CCCCcHHHHHHHHHHHHHHHHHHHHhcC---C
Q psy3123 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR--------SGLRNKELVERMRGKLENMLMHVLNQNH---P 264 (585)
Q Consensus 196 ~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr--------~GLsd~~~Ve~lQer~l~aL~~yi~~~~---p 264 (585)
.+..++++.+++|+.+|++|++|++||+|||||+|||||+ +||.+...|+++|++|..+|.+||..++ +
T Consensus 122 ~g~~~~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~ 201 (298)
T 2ocf_A 122 EGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQ 201 (298)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhHHHHHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4566788999999999999999999999999999999999 7778889999999999999999998864 5
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 265 EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 265 ~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
+++.||++||++||.||+++..+.|.++++++++.+++++|+.|||..+.
T Consensus 202 ~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~~~ 251 (298)
T 2ocf_A 202 QQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 251 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcCCC
Confidence 77899999999999999999999999999999999999999999999764
No 32
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=100.00 E-value=2.4e-35 Score=298.88 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=181.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCC----Cce--------------
Q psy3123 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ----TNS-------------- 179 (585)
Q Consensus 118 ~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~----~~~-------------- 179 (585)
...|+++++++...++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|+++... .+.
T Consensus 41 ~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~ 120 (264)
T 1g2n_A 41 RAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQL 120 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHccccccccccccccccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999987555 566
Q ss_pred eEecCCeeecchhhcccchHHHH-HHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Q psy3123 180 MICLNGEVLVRDSIHSSNARFLM-DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHV 258 (585)
Q Consensus 180 ll~~nG~~i~rd~l~~~~~~~li-~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~y 258 (585)
+++++|..++++..+..+...+. +.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++|
T Consensus 121 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y 200 (264)
T 1g2n_A 121 MCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEY 200 (264)
T ss_dssp EEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 89999999998887654555566 56789999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 259 LNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 259 i~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
|..+||+++.||++||++||.||+++..+.|.++++++++..++++|+.|||....
T Consensus 201 ~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 256 (264)
T 1g2n_A 201 CRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNHA 256 (264)
T ss_dssp HHHHSTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTCCC
T ss_pred HHHhCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998643
No 33
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=100.00 E-value=1.8e-35 Score=296.65 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=181.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccC--CCceeEecCCeeecchhhccc
Q psy3123 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS--QTNSMICLNGEVLVRDSIHSS 196 (585)
Q Consensus 119 e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~--~~~~ll~~nG~~i~rd~l~~~ 196 (585)
..|+.+++++++.+..+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++.. ..+.+.+++|..++++.....
T Consensus 46 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~ 125 (243)
T 2iz2_A 46 DLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLL 125 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhhc
Confidence 478999999999999999999999999999999999999999999999999998643 257788999998888876644
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHh
Q psy3123 197 NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISM 276 (585)
Q Consensus 197 ~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLll 276 (585)
+...+++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|.+||..+||+++.||++||++
T Consensus 126 ~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~ 205 (243)
T 2iz2_A 126 GVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNI 205 (243)
T ss_dssp STTSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTH
T ss_pred chHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 277 LPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 277 Lp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
||.||+++..+.|.++++++++.+++++|+.|||..+
T Consensus 206 L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 242 (243)
T 2iz2_A 206 LPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAK 242 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999754
No 34
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=100.00 E-value=2.9e-35 Score=297.82 Aligned_cols=197 Identities=20% Similarity=0.242 Sum_probs=182.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhc--cCCCceeEecCCeeecchhhc
Q psy3123 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMF--DSQTNSMICLNGEVLVRDSIH 194 (585)
Q Consensus 117 r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~--~~~~~~ll~~nG~~i~rd~l~ 194 (585)
+...|..+++.+++.+..+|+|||+||+|.+|+.+||++|||++|+|+++|+.|+++ +...+++++++|..+.++.+.
T Consensus 54 ~~~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~ 133 (257)
T 3plz_A 54 KLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIA 133 (257)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHh
Confidence 345789999999999999999999999999999999999999999999999999864 333589999999999887765
Q ss_pred -ccch--HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q psy3123 195 -SSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCA 271 (585)
Q Consensus 195 -~~~~--~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~ 271 (585)
..+. .++++.+++|+.+|++|++|++||+||+||+|||||++||++...|+++|++|..+|++||..+||+++.||+
T Consensus 134 ~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~ 213 (257)
T 3plz_A 134 SQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 213 (257)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 3333 5788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 272 ELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 272 kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
+||++||.||+++..+.|.++++++++.+++++|+.|||...
T Consensus 214 ~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~k 255 (257)
T 3plz_A 214 QLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 255 (257)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC-
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999864
No 35
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=100.00 E-value=7.8e-35 Score=296.39 Aligned_cols=197 Identities=19% Similarity=0.254 Sum_probs=178.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhc-c
Q psy3123 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-S 195 (585)
Q Consensus 117 r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~-~ 195 (585)
...+|..+++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|+++....+.++|++|..++++... .
T Consensus 29 ~~~~~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~ 108 (268)
T 1yye_A 29 EASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCV 108 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEGGGGGGS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEecCCcccChhhHhhh
Confidence 467899999999999999999999999999999999999999999999999999987777789999999998887654 3
Q ss_pred cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCc-------HHHHHHHHHHHHHHHHHHHHhcC---CC
Q psy3123 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN-------KELVERMRGKLENMLMHVLNQNH---PE 265 (585)
Q Consensus 196 ~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd-------~~~Ve~lQer~l~aL~~yi~~~~---p~ 265 (585)
.+..++++.+++|+.+|++|++|++||+|||||+|||||++||++ ...|+++|++|..+|+.||..++ ++
T Consensus 109 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~ 188 (268)
T 1yye_A 109 EGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQ 188 (268)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 456678899999999999999999999999999999999999974 78999999999999999998874 57
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 266 QMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 266 ~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
++.||++||++||.||+++..+.|.++++++++.+++++|+.|||..+
T Consensus 189 ~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 236 (268)
T 1yye_A 189 QSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 236 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCc
Confidence 889999999999999999999999999999999999999999999964
No 36
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=100.00 E-value=6.7e-35 Score=292.52 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=179.7
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccC--CCceeEecCCeeecchhhc-cc
Q psy3123 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS--QTNSMICLNGEVLVRDSIH-SS 196 (585)
Q Consensus 120 ~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~--~~~~ll~~nG~~i~rd~l~-~~ 196 (585)
.++.+++++.+.+..+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++.. +.+.++++||..+.++.+. ..
T Consensus 46 ~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~ 125 (246)
T 1ymt_A 46 PFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQA 125 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhc
Confidence 36899999999999999999999999999999999999999999999999998643 4689999999998887654 22
Q ss_pred c--hHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy3123 197 N--ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELI 274 (585)
Q Consensus 197 ~--~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLL 274 (585)
+ ..++++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||..+||+++.||++||
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL 205 (246)
T 1ymt_A 126 GSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLL 205 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 2 24678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 275 SMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 275 llLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
++||.||+++..+.|.++++++++.+++++|+.|||..+
T Consensus 206 ~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 244 (246)
T 1ymt_A 206 LSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAK 244 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999853
No 37
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=100.00 E-value=8.9e-35 Score=291.98 Aligned_cols=197 Identities=18% Similarity=0.301 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhc-cc
Q psy3123 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-SS 196 (585)
Q Consensus 118 ~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~-~~ 196 (585)
...|+.+++.+++.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++....+.++|++|..++++... ..
T Consensus 34 ~~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~ 113 (248)
T 1xpc_A 34 ASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVE 113 (248)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEHHHHTTST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhccccCceeecCCceeCccchhhhc
Confidence 45799999999999999999999999999999999999999999999999999998888899999999988887643 34
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCC--------CCcHHHHHHHHHHHHHHHHHHHHhcC---CC
Q psy3123 197 NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG--------LRNKELVERMRGKLENMLMHVLNQNH---PE 265 (585)
Q Consensus 197 ~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~G--------Lsd~~~Ve~lQer~l~aL~~yi~~~~---p~ 265 (585)
+..++++.+++|+.+|++|++|++||+|||||+|||||++| |.+...|+++|++|..+|++||..++ ++
T Consensus 114 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~ 193 (248)
T 1xpc_A 114 GMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQ 193 (248)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 55678899999999999999999999999999999999954 55678999999999999999999875 46
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 266 QMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 266 ~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
++.||++||++||.||+++..+.|.++++++++.+++++|+.|||..+.
T Consensus 194 ~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 242 (248)
T 1xpc_A 194 QHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 242 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSCCS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCc
Confidence 7899999999999999999999999999999999999999999999764
No 38
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=4.2e-35 Score=291.87 Aligned_cols=195 Identities=21% Similarity=0.363 Sum_probs=179.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccch
Q psy3123 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNA 198 (585)
Q Consensus 119 e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~ 198 (585)
..+.++++++...++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++....+.+++++|..+.++.....+.
T Consensus 37 ~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~ 116 (235)
T 2nxx_A 37 TTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGV 116 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSEECSSSCEECSSSCSSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCCCceEecCCcccccchhhhhch
Confidence 46789999999999999999999999999999999999999999999999999876667889999999998887653333
Q ss_pred HHHHHH-HHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhh
Q psy3123 199 RFLMDS-MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISML 277 (585)
Q Consensus 199 ~~li~~-m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllL 277 (585)
..+.+. +++|+.+|++|++|++||+||+||+|||||++||++...|+++|++|..+|++||..+||+++.||++||++|
T Consensus 117 ~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L 196 (235)
T 2nxx_A 117 GNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRL 196 (235)
T ss_dssp SSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHh
Confidence 344444 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 278 PDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 278 p~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
|.||+++..+.|.++++++++.+++++|+.|||...
T Consensus 197 ~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~ 232 (235)
T 2nxx_A 197 PALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGT 232 (235)
T ss_dssp HHHHHHHHTCCSCTTTTSSSSCCCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCC
Confidence 999999999999999999999999999999999864
No 39
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=5.2e-35 Score=319.32 Aligned_cols=191 Identities=27% Similarity=0.398 Sum_probs=178.1
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchHHH
Q psy3123 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFL 201 (585)
Q Consensus 122 ~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~~l 201 (585)
..+++++...++.+|+|||.||+|.+|+.+||++|||++|+|++++++|+++....+.+++++|..+.++..+..+...+
T Consensus 271 ~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~~~~~~~ 350 (467)
T 3dzy_A 271 TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAI 350 (467)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhhhcchHH
Confidence 35677888999999999999999999999999999999999999999999987777889999999999888775555667
Q ss_pred HHHHH-HHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhHHH
Q psy3123 202 MDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280 (585)
Q Consensus 202 i~~m~-~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp~L 280 (585)
.+.++ +|+.+|++|++|++||+||+||+||+||++||++...|+++|++++.+|++||..+|++++.||++||++||.|
T Consensus 351 ~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~L 430 (467)
T 3dzy_A 351 FDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPAL 430 (467)
T ss_dssp HHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 77777 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhHHHHHHhcC
Q psy3123 281 RTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 281 R~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~ 312 (585)
|+++..+.|.|+++++++.++++.|+.|||+.
T Consensus 431 Rsi~~~~~E~l~~~kl~g~v~i~~Ll~EMl~a 462 (467)
T 3dzy_A 431 RSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462 (467)
T ss_dssp HHHHHHHHHTTTTTSTTSCCCCCSHHHHCC--
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHcC
Confidence 99999999999999999999999999999984
No 40
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=100.00 E-value=2.7e-34 Score=292.85 Aligned_cols=198 Identities=19% Similarity=0.250 Sum_probs=178.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhc-c
Q psy3123 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH-S 195 (585)
Q Consensus 117 r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~-~ 195 (585)
....|+.+++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|+++....+.++|++|..++++... .
T Consensus 57 ~~~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~ 136 (271)
T 1l2j_A 57 EASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCV 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSSTTEECSSSSCCEETGGGGGS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCeeeecCCccccchhhhhh
Confidence 456899999999999999999999999999999999999999999999999999988777789999999988887654 3
Q ss_pred cchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCc-------HHHHHHHHHHHHHHHHHHHHhc---CCC
Q psy3123 196 SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN-------KELVERMRGKLENMLMHVLNQN---HPE 265 (585)
Q Consensus 196 ~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd-------~~~Ve~lQer~l~aL~~yi~~~---~p~ 265 (585)
.+..++++.+++|+.+|++|++|++||+|||||+|||||++||++ ++.|+++|++|..+|+.||..+ +++
T Consensus 137 ~g~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~ 216 (271)
T 1l2j_A 137 EGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQ 216 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 456678899999999999999999999999999999999999975 4688999999999999999876 367
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 266 QMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 266 ~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
++.||++||++||.||+++..+.|.++++++++.+++++|+.|||..+.
T Consensus 217 ~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 265 (271)
T 1l2j_A 217 QSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 265 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHcCCc
Confidence 8999999999999999999999999999999999999999999998653
No 41
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=100.00 E-value=8.7e-34 Score=287.44 Aligned_cols=198 Identities=18% Similarity=0.228 Sum_probs=177.1
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhh-ccCC-CceeEecCCeeecchhh
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM-FDSQ-TNSMICLNGEVLVRDSI 193 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r-~~~~-~~~ll~~nG~~i~rd~l 193 (585)
+....|+.+++++++.+..+|+|||+||+|.+|+.+||++|||++|+|+++++.|++ ++.. .+.+++++|..+.++..
T Consensus 37 ~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~ 116 (260)
T 3vhv_A 37 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKM 116 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHh
Confidence 567899999999999999999999999999999999999999999999999999987 4443 36899999999998887
Q ss_pred cccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCc---hhH
Q psy3123 194 HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP-SRSGLRNKELVERMRGKLENMLMHVLNQNHPEQ---MNL 269 (585)
Q Consensus 194 ~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsP-Dr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~---p~R 269 (585)
+..+..++++.+++|+.+|++|++|++||+||+||+|||| |++||++...|+++|++|..+|++||..+|++. +.|
T Consensus 117 ~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~R 196 (260)
T 3vhv_A 117 HQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQR 196 (260)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhH
Confidence 6555667889999999999999999999999999999999 999999999999999999999999999998865 799
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhh---ccccchhHHHHHHhcCC
Q psy3123 270 CAELISMLPDLRTLNQLHSEKLVAFQM---TEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 270 F~kLLllLp~LR~Ls~~h~E~L~~~kl---~~~i~l~~Ll~Emf~~~ 313 (585)
|++||++||.||+++..+.|.+++... ...+++++|+.|||..+
T Consensus 197 F~~LL~~Lp~Lr~l~~~~~e~lff~~~~~~~~~~~~p~Ll~Ei~~~~ 243 (260)
T 3vhv_A 197 FYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQ 243 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHhcc
Confidence 999999999999999999999986543 34678999999999853
No 42
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=303.68 Aligned_cols=197 Identities=20% Similarity=0.242 Sum_probs=166.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhc--cCCCceeEecCCeeecchhhc
Q psy3123 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMF--DSQTNSMICLNGEVLVRDSIH 194 (585)
Q Consensus 117 r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~--~~~~~~ll~~nG~~i~rd~l~ 194 (585)
+...|+.+++++.+.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|++. +...+.+++.+|..+.++.+.
T Consensus 149 r~~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~ 228 (352)
T 3tx7_B 149 KLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIA 228 (352)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHH
Confidence 446899999999999999999999999999999999999999999999999999864 334578999999998887664
Q ss_pred -ccch--HHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q psy3123 195 -SSNA--RFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCA 271 (585)
Q Consensus 195 -~~~~--~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~ 271 (585)
..+. .++++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||..+|++++.||+
T Consensus 229 ~~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~ 308 (352)
T 3tx7_B 229 SQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 308 (352)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH
Confidence 2222 5788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 272 ELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 272 kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
+||++|+.||.++..+.|.|+++++++.+++++|+.|||...
T Consensus 309 kLLllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~ak 350 (352)
T 3tx7_B 309 QLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999863
No 43
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=3.3e-33 Score=284.97 Aligned_cols=198 Identities=22% Similarity=0.340 Sum_probs=166.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhh-ccCCCc-------eeEecCCeee
Q psy3123 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM-FDSQTN-------SMICLNGEVL 188 (585)
Q Consensus 117 r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r-~~~~~~-------~ll~~nG~~i 188 (585)
....|.++++++...++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|++ ++...+ .+.++||.++
T Consensus 45 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~ 124 (279)
T 1hg4_A 45 YKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFE 124 (279)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC-------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCcccc
Confidence 34579999999999999999999999999999999999999999999999999986 443332 3566666543
Q ss_pred cc-------------------hhhcccchHHHHHH-HHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHH
Q psy3123 189 VR-------------------DSIHSSNARFLMDS-MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248 (585)
Q Consensus 189 ~r-------------------d~l~~~~~~~li~~-m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQ 248 (585)
.+ +.....+...+.+. +.+|+.+|++|++|++||+|||||+|||||++||++...|+++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq 204 (279)
T 1hg4_A 125 RRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCR 204 (279)
T ss_dssp ------CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHH
T ss_pred ccccccccceeeecCCcccchhhHhhcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 32 22222233344444 45899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 249 er~l~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
++|..+|++||..+||+++.||++||++||.||+++..+.+.++++++++.+++++|+.|||....
T Consensus 205 ~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 270 (279)
T 1hg4_A 205 EKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPP 270 (279)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999764
No 44
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=100.00 E-value=2.3e-33 Score=279.77 Aligned_cols=195 Identities=27% Similarity=0.388 Sum_probs=180.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccch
Q psy3123 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNA 198 (585)
Q Consensus 119 e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~ 198 (585)
..+..+++.+.+.+..+|+|||++|+|.+|+.+||++|||++|+|+++++.|+++....+.+++++|..+.++..+..+.
T Consensus 41 ~~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~ 120 (240)
T 2p1t_A 41 DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 120 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSEEECTTSCEEEHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCcccccchhhhhch
Confidence 35789999999999999999999999999999999999999999999999999866656788899999988887765444
Q ss_pred HHHHHH-HHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhh
Q psy3123 199 RFLMDS-MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISML 277 (585)
Q Consensus 199 ~~li~~-m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllL 277 (585)
..+.+. +.+|+.+|++|++|++||+||+||+||+||++|+++...|+++|+++..+|++||..+||+++.||++||++|
T Consensus 121 ~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 200 (240)
T 2p1t_A 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRL 200 (240)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 555555 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 278 PDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 278 p~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
+.||+++..+.|.++++++++.+++++|+.|||...
T Consensus 201 ~~Lr~~~~~~~e~l~~~~~~~~~~~~~ll~eml~~~ 236 (240)
T 2p1t_A 201 PALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 236 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCchHHHHHHHHcCC
Confidence 999999999999999999999999999999999864
No 45
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=100.00 E-value=3.1e-34 Score=288.37 Aligned_cols=188 Identities=22% Similarity=0.311 Sum_probs=168.5
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeE---ecCCeeecchhhcc--c
Q psy3123 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI---CLNGEVLVRDSIHS--S 196 (585)
Q Consensus 122 ~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll---~~nG~~i~rd~l~~--~ 196 (585)
+++++.++..++.+|+|||+||||.+|+.+||++|||++|+|++++++|++|+...++|. +.+|..++++..+. .
T Consensus 44 ~~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (243)
T 3up3_A 44 ADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNA 123 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGSCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhhcc
Confidence 368899999999999999999999999999999999999999999999999999988874 45777777776552 3
Q ss_pred chHH-HHHHHHHHHHHHhh-cCCChhHHHHHHHHHhhcCCCCCCCcH---HHHHHHHHHHHHHHHHHHHhcC-CCchhHH
Q psy3123 197 NARF-LMDSMFDFAERLNG-LHLSDTEIGLFSSIVVISPSRSGLRNK---ELVERMRGKLENMLMHVLNQNH-PEQMNLC 270 (585)
Q Consensus 197 ~~~~-li~~m~~f~~~L~~-LqLde~E~ALLkAIvLfsPDr~GLsd~---~~Ve~lQer~l~aL~~yi~~~~-p~~p~RF 270 (585)
+..+ +++.+++|+.+|+. |++|++||+||+||+||||| +||++. ..|+++|++|..+|++||..+| |+++.||
T Consensus 124 g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLfsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf 202 (243)
T 3up3_A 124 DVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPR-DSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLN 202 (243)
T ss_dssp TTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 4444 67889999999997 99999999999999999998 999865 8999999999999999998776 7889999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcC
Q psy3123 271 AELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 271 ~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~ 312 (585)
++||++||+||+++. +.+.+++++. +..++++|+.|||+-
T Consensus 203 ~kLL~~Lp~LR~i~~-~~e~lf~~k~-~~~~~~pLl~E~f~~ 242 (243)
T 3up3_A 203 EQLPTALRMLREISA-SSGMLFLGTV-NTSEAEPLPREFFKV 242 (243)
T ss_dssp HHHHHHHHHHHHHHH-TCTTTTTTSC-CGGGSCHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhccc-CCCCCCcHHHHHhCC
Confidence 999999999999999 9999887774 567899999999974
No 46
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=100.00 E-value=3.6e-34 Score=291.88 Aligned_cols=194 Identities=18% Similarity=0.143 Sum_probs=167.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeE----ecCCeeecchh--
Q psy3123 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI----CLNGEVLVRDS-- 192 (585)
Q Consensus 119 e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll----~~nG~~i~rd~-- 192 (585)
..++.+++++++.++.+|+|||+||||.+|+.+||++|||++|+|+++|++|+++........ +.+|.+.....
T Consensus 47 ~~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~ 126 (268)
T 3f5c_B 47 KDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQET 126 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhccccccc
Confidence 346899999999999999999999999999999999999999999999999998765543321 11222222211
Q ss_pred --------------------hcccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHH
Q psy3123 193 --------------------IHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLE 252 (585)
Q Consensus 193 --------------------l~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l 252 (585)
...+...++++.+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|.
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~ 206 (268)
T 3f5c_B 127 EGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQ 206 (268)
T ss_dssp ----------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Confidence 011112356788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcC
Q psy3123 253 NMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 253 ~aL~~yi~~~~p~~p~RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~ 312 (585)
.+|++||..+||+++.||++||++||.||+++..+.|.+++++++|.+++++|+.|||..
T Consensus 207 ~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~a 266 (268)
T 3f5c_B 207 QILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCA 266 (268)
T ss_dssp HHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 47
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=288.53 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=169.3
Q ss_pred HHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccC-CCceeEecCCeee----cchhhc-
Q psy3123 121 LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS-QTNSMICLNGEVL----VRDSIH- 194 (585)
Q Consensus 121 ~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~-~~~~ll~~nG~~i----~rd~l~- 194 (585)
|+.+++++.+.+..+|+|||+||+|.+|+.+||++|||++|+|+++|+.|+++.. +.+.+++.+|..+ ..+.+.
T Consensus 36 ~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~ 115 (249)
T 3p0u_A 36 VHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSG 115 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccchh
Confidence 5789999999999999999999999999999999999999999999999998755 3455666655432 222222
Q ss_pred --ccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q psy3123 195 --SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAE 272 (585)
Q Consensus 195 --~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~k 272 (585)
.....+.+..+++|+.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||..+||+++.||++
T Consensus 116 ~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~ 195 (249)
T 3p0u_A 116 DRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLAR 195 (249)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 223345667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 273 LISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 273 LLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
||++||.||+++..+.|.+++++++|.+++++|+.|||.++.
T Consensus 196 LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~Ll~eml~~~~ 237 (249)
T 3p0u_A 196 ILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMET 237 (249)
T ss_dssp HHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHeeeecccCCCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999753
No 48
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=100.00 E-value=8.3e-34 Score=284.06 Aligned_cols=195 Identities=21% Similarity=0.227 Sum_probs=165.2
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCC-CceeEecCCeeecchhh-cccc
Q psy3123 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ-TNSMICLNGEVLVRDSI-HSSN 197 (585)
Q Consensus 120 ~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~-~~~ll~~nG~~i~rd~l-~~~~ 197 (585)
.|+++++++.+.+..+|+|||+||||.+|+.+||++|||++|+|+++++.|+++... .+.+++.+|........ +...
T Consensus 38 ~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~ 117 (244)
T 3cjw_A 38 GIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVA 117 (244)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC-----------------CC
T ss_pred cHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhHH
Confidence 357899999999999999999999999999999999999999999999999986543 45566677754321111 1112
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhh
Q psy3123 198 ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISML 277 (585)
Q Consensus 198 ~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllL 277 (585)
..+.+..+.+++.+|++|++|++||+|||||+|||||++||++...|+++|++|..+|++||..+||+++.||++||++|
T Consensus 118 ~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L 197 (244)
T 3cjw_A 118 FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRL 197 (244)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHh
Confidence 22345678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCCC
Q psy3123 278 PDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGED 314 (585)
Q Consensus 278 p~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~~ 314 (585)
|.||+++..+.|.++++++++.+++++|+.|||....
T Consensus 198 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 234 (244)
T 3cjw_A 198 PSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS 234 (244)
T ss_dssp HHHHHSCHHHHHHHHTHHHHTTCCGGGTHHHHHTCCC
T ss_pred HHHHhhhHHHHHHHHhhcccCCCcHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999998653
No 49
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=100.00 E-value=4.5e-33 Score=282.49 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=180.0
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhc-cCCC-ceeEecCCeeecchhh
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMF-DSQT-NSMICLNGEVLVRDSI 193 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~-~~~~-~~ll~~nG~~i~rd~l 193 (585)
.....|..+++++++.+..+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++ +.+. +.+++++|..+.++..
T Consensus 39 ~~~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~ 118 (261)
T 3mnp_A 39 SAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRM 118 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhh
Confidence 4577899999999999999999999999999999999999999999999999999874 4333 3588999999998887
Q ss_pred cccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCC---chhH
Q psy3123 194 HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP-SRSGLRNKELVERMRGKLENMLMHVLNQNHPE---QMNL 269 (585)
Q Consensus 194 ~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsP-Dr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~---~p~R 269 (585)
+..+..++++.+++|+.+|++|++|++||+||+||+|||| |++||++...|+++|++|..+|++||..+|++ ++.|
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~R 198 (261)
T 3mnp_A 119 TLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQR 198 (261)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhH
Confidence 7666667889999999999999999999999999999999 99999999999999999999999999999984 5899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhc--cccchhHHHHHHhcC
Q psy3123 270 CAELISMLPDLRTLNQLHSEKLVAFQMT--EQQQQLAAQQQQWHG 312 (585)
Q Consensus 270 F~kLLllLp~LR~Ls~~h~E~L~~~kl~--~~i~l~~Ll~Emf~~ 312 (585)
|++||++|+.||+++..+.+.+++++.. ....+++|+.|||+.
T Consensus 199 f~~LL~lL~~Lr~l~~~~~e~~f~~~~~~~~~~~~p~Ll~Ei~~~ 243 (261)
T 3mnp_A 199 FYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITN 243 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHhc
Confidence 9999999999999999999999887765 356789999999984
No 50
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=287.12 Aligned_cols=199 Identities=18% Similarity=0.229 Sum_probs=175.6
Q ss_pred cchHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhh-ccCC-CceeEecCCeeecchh
Q psy3123 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM-FDSQ-TNSMICLNGEVLVRDS 192 (585)
Q Consensus 115 ~~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r-~~~~-~~~ll~~nG~~i~rd~ 192 (585)
.+....|+.+++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|++ ++.. .+.+++++|..+.++.
T Consensus 70 ~~~~~~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~ 149 (294)
T 3vhu_A 70 DTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEK 149 (294)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHH
Confidence 3567899999999999999999999999999999999999999999999999999987 4433 4589999999998887
Q ss_pred hcccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCc---hh
Q psy3123 193 IHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP-SRSGLRNKELVERMRGKLENMLMHVLNQNHPEQ---MN 268 (585)
Q Consensus 193 l~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsP-Dr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~---p~ 268 (585)
.+..+..++++.+++|+.+|++|++|++||+||+||+|||| |++||++...|+++|++|..+|++||..++++. +.
T Consensus 150 ~~~~~~~~~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~ 229 (294)
T 3vhu_A 150 MHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQ 229 (294)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhH
Confidence 76555667889999999999999999999999999999999 999999999999999999999999999888764 79
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhh---ccccchhHHHHHHhcCC
Q psy3123 269 LCAELISMLPDLRTLNQLHSEKLVAFQM---TEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 269 RF~kLLllLp~LR~Ls~~h~E~L~~~kl---~~~i~l~~Ll~Emf~~~ 313 (585)
||++||++||.||+++..+.|.+++... ...+.+++|+.|||..+
T Consensus 230 RF~~LL~lLp~Lr~l~~~~~e~lff~~~q~~~~~~~~p~Ll~Ei~~~~ 277 (294)
T 3vhu_A 230 RFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQ 277 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCHHHHHHHcCC
Confidence 9999999999999999999999885443 34577999999999853
No 51
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=100.00 E-value=6.6e-33 Score=282.17 Aligned_cols=197 Identities=15% Similarity=0.190 Sum_probs=177.1
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhh-ccCCCc-eeEecCCeeecchhh
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM-FDSQTN-SMICLNGEVLVRDSI 193 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r-~~~~~~-~ll~~nG~~i~rd~l 193 (585)
+....|+.+++.+++.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.||+ ++..++ .+++++|.+++++..
T Consensus 46 ~~~~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~ 125 (269)
T 1t7r_A 46 SFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRM 125 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhh
Confidence 456789999999999999999999999999999999999999999999999999976 554444 688899999988877
Q ss_pred cccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhcC---CCchhH
Q psy3123 194 HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP-SRSGLRNKELVERMRGKLENMLMHVLNQNH---PEQMNL 269 (585)
Q Consensus 194 ~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsP-Dr~GLsd~~~Ve~lQer~l~aL~~yi~~~~---p~~p~R 269 (585)
+......+++.+++|+.+|++|++|++||+|||||+|||| |++||++...|+++|++|..+|.+||..++ ++++.|
T Consensus 126 ~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~R 205 (269)
T 1t7r_A 126 HKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRR 205 (269)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 6555556778899999999999999999999999999999 899999999999999999999999998775 467899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHh--h-ccccchhHHHHHHhcC
Q psy3123 270 CAELISMLPDLRTLNQLHSEKLVAFQ--M-TEQQQQLAAQQQQWHG 312 (585)
Q Consensus 270 F~kLLllLp~LR~Ls~~h~E~L~~~k--l-~~~i~l~~Ll~Emf~~ 312 (585)
|++||++|+.||+++..+.|.++.++ . .+.+++++|+.|||..
T Consensus 206 f~~LL~~L~~Lr~l~~~~~e~lf~~~~~~~~~~~~~~~Ll~E~~~~ 251 (269)
T 1t7r_A 206 FYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISV 251 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcChHHHHHHHHhC
Confidence 99999999999999999999998643 2 2578899999999984
No 52
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=100.00 E-value=2.2e-33 Score=282.67 Aligned_cols=187 Identities=19% Similarity=0.276 Sum_probs=160.6
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCee--ecchhhcc---c
Q psy3123 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV--LVRDSIHS---S 196 (585)
Q Consensus 122 ~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~--i~rd~l~~---~ 196 (585)
+.+++.++..|+.+|+|||+||||.+|+++||++|||++|+|++++++|++|+.+.+.|.+++|.. +..+.++. .
T Consensus 44 ~~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 123 (244)
T 3gyt_A 44 TDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPD 123 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCTTSTTCCEEGGGGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEeecCCcccchhHHHHHHhhhc
Confidence 467899999999999999999999999999999999999999999999999999999999988742 22222221 1
Q ss_pred ----chHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCC---cHHHHHHHHHHHHHHHHHHHHhcC-CCchh
Q psy3123 197 ----NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR---NKELVERMRGKLENMLMHVLNQNH-PEQMN 268 (585)
Q Consensus 197 ----~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLs---d~~~Ve~lQer~l~aL~~yi~~~~-p~~p~ 268 (585)
....+++.+++|...++.+ +.||+||+||+||+||++||. +...|+++|+++..+|+.||..+| |+++.
T Consensus 124 ~~~~~~~~~~~~~~~f~~~l~~~---~~E~alLkAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~ 200 (244)
T 3gyt_A 124 IKDTQKKGFLHFFNLLHSDVRKN---DLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQ 200 (244)
T ss_dssp THHHHHHHHHHHHHHSCHHHHTC---HHHHHHHHHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 1134667777888777774 569999999999999999999 789999999999999999999888 78899
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccchhHHHHHHhcCC
Q psy3123 269 LCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHGE 313 (585)
Q Consensus 269 RF~kLLllLp~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~~ 313 (585)
||++||++||+||+|+..|.+ + +++.....++++|+.|||..+
T Consensus 201 rf~kLL~~Lp~LR~i~~~~~~-l-f~~~~~~~~~~pLl~Eif~~~ 243 (244)
T 3gyt_A 201 RFASIPKALVALRKVAENAVT-L-FLGAGNTTEAASLPKEFFATN 243 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-T-TTTSCCCTTSCTTGGGTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H-HHhccCCccCCcHHHHHhCcC
Confidence 999999999999999999999 3 455566678999999999854
No 53
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=100.00 E-value=1.2e-32 Score=279.11 Aligned_cols=195 Identities=17% Similarity=0.236 Sum_probs=175.5
Q ss_pred chHHHHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCC-Cc-eeEecCCeeecchhh
Q psy3123 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ-TN-SMICLNGEVLVRDSI 193 (585)
Q Consensus 116 ~r~e~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~-~~-~ll~~nG~~i~rd~l 193 (585)
+....|..+++++++.+..+|+|||+||+|.+|+.+||++|||++|+|+++++.|+++... .+ .+++.+|..++++..
T Consensus 38 ~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~ 117 (261)
T 1sqn_A 38 TSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRM 117 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhh
Confidence 4567899999999999999999999999999999999999999999999999999986443 23 588999998888877
Q ss_pred cccchHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhc---CCCchhH
Q psy3123 194 HSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP-SRSGLRNKELVERMRGKLENMLMHVLNQN---HPEQMNL 269 (585)
Q Consensus 194 ~~~~~~~li~~m~~f~~~L~~LqLde~E~ALLkAIvLfsP-Dr~GLsd~~~Ve~lQer~l~aL~~yi~~~---~p~~p~R 269 (585)
+..+..++++.+++|+.+|++|++|++||+|||||+|||| |++||++...|+++|++|..+|.+||..+ +++++.|
T Consensus 118 ~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~R 197 (261)
T 1sqn_A 118 KESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQR 197 (261)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHH
Confidence 6555566788899999999999999999999999999999 89999999999999999999999999875 4678999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhc-----cccchhHHHHHHhcC
Q psy3123 270 CAELISMLPDLRTLNQLHSEKLVAFQMT-----EQQQQLAAQQQQWHG 312 (585)
Q Consensus 270 F~kLLllLp~LR~Ls~~h~E~L~~~kl~-----~~i~l~~Ll~Emf~~ 312 (585)
|++||++|+.||+++..+ .+++++++ +..++++|+.|||..
T Consensus 198 f~~LL~~L~~Lr~~~~~~--~~~~~~~~~q~~~~~~~~~~Ll~Ei~~~ 243 (261)
T 1sqn_A 198 FYQLTKLLDNLHDLVKQL--HLYCLNTFIQSRALSVEFPEMMSEVIAA 243 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH--HHHHHHHHHHhcCCCCChHHHHHHHHhc
Confidence 999999999999999776 55667777 789999999999984
No 54
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.98 E-value=9.4e-32 Score=266.59 Aligned_cols=193 Identities=21% Similarity=0.290 Sum_probs=179.4
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCccccchhhHHHHHHHHHHHHHHHHHhhccCCCceeEecCCeeecchhhcccchH
Q psy3123 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNAR 199 (585)
Q Consensus 120 ~~~~~~e~~~~~I~~vVeFAK~LPgF~~Ls~eDQi~LLK~s~~ElllLr~A~r~~~~~~~ll~~nG~~i~rd~l~~~~~~ 199 (585)
.+.++++++...+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++........
T Consensus 42 ~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (237)
T 1pzl_A 42 SIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMS 121 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTSSSEEECTTSCEEESSCGGGGGGH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCCcccCccchhhhhhH
Confidence 46889999999999999999999999999999999999999999999999999887888999999998887765543445
Q ss_pred HHHHHHH-HHHHHHhhcCCChhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhhH
Q psy3123 200 FLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278 (585)
Q Consensus 200 ~li~~m~-~f~~~L~~LqLde~E~ALLkAIvLfsPDr~GLsd~~~Ve~lQer~l~aL~~yi~~~~p~~p~RF~kLLllLp 278 (585)
.+.+.++ +++.+|++|++|++||+||+||+||+||++|+++...|+++|+++..+|++||..++|+++.||++||++++
T Consensus 122 ~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 201 (237)
T 1pzl_A 122 RVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLP 201 (237)
T ss_dssp HHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 5566655 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHhcC
Q psy3123 279 DLRTLNQLHSEKLVAFQMTEQQQQLAAQQQQWHG 312 (585)
Q Consensus 279 ~LR~Ls~~h~E~L~~~kl~~~i~l~~Ll~Emf~~ 312 (585)
.||+++..+.+.++++++++..+++.++.|||..
T Consensus 202 ~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~~ 235 (237)
T 1pzl_A 202 TLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLG 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHcC
Confidence 9999999999999999999999999999999974
No 55
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=92.06 E-value=0.043 Score=46.97 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=12.2
Q ss_pred ccccCCCccccCCccchHHHHH
Q psy3123 16 NARYHNAPVRFGRVPKREKARI 37 (585)
Q Consensus 16 ~VGMSrdAVR~GRvPKreK~~l 37 (585)
.|||++++||++|+|+++|++|
T Consensus 73 ~vGM~~~~vq~~R~~~~~k~~~ 94 (94)
T 1a6y_A 73 SVGMSRDAVRFGRIPKREKQRM 94 (94)
T ss_dssp TTTCCSTTCCCCC---------
T ss_pred HccCCHHHhccCcCcCchhccC
Confidence 4899999999999999998864
No 56
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=83.86 E-value=0.25 Score=41.78 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.9
Q ss_pred ccccccccccccCCCccccCCccch
Q psy3123 8 ILKSILKGNARYHNAPVRFGRVPKR 32 (585)
Q Consensus 8 ~~vGM~kE~VGMSrdAVR~GRvPKr 32 (585)
+.|||.+|+|..++...|+||+|++
T Consensus 64 l~vGM~~~~vq~~~~~~~r~r~p~~ 88 (89)
T 1cit_A 64 LAVGMVKEVVRTDSLKGRRGRLPSK 88 (89)
T ss_dssp HHTTCCGGGSCCGGGTTCCSCCCCC
T ss_pred hHcCCCHHHeecccccCccccCCCC
Confidence 4689999999998888899999985
No 57
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=60.49 E-value=2.3 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=10.9
Q ss_pred ccccCCCccccCCccch
Q psy3123 16 NARYHNAPVRFGRVPKR 32 (585)
Q Consensus 16 ~VGMSrdAVR~GRvPKr 32 (585)
.|||++++||++|.+++
T Consensus 69 ~vGM~~~~vq~~R~~~k 85 (86)
T 1dsz_A 69 EVGMSKESVRNDRNKKK 85 (86)
T ss_dssp HTTCCGGGSCCC-----
T ss_pred HhCCCHHHhhhcccccc
Confidence 38999999999998876
No 58
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=58.34 E-value=2.8 Score=35.96 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=8.2
Q ss_pred cccCCCccccCCccchHHH
Q psy3123 17 ARYHNAPVRFGRVPKREKA 35 (585)
Q Consensus 17 VGMSrdAVR~GRvPKreK~ 35 (585)
|||++++||++|.+++++.
T Consensus 69 vGM~~~~vq~~R~~~~~~~ 87 (99)
T 1ynw_B 69 MGMKREAVQEERQRGKDRN 87 (99)
T ss_dssp TTCCSTTCC----------
T ss_pred cCCCHHHhhhccccccccC
Confidence 7899999999999987665
No 59
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=40.00 E-value=4.6 Score=33.95 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=14.1
Q ss_pred ccccCCCccccCCccc
Q psy3123 16 NARYHNAPVRFGRVPK 31 (585)
Q Consensus 16 ~VGMSrdAVR~GRvPK 31 (585)
.|||++++||++|.|+
T Consensus 72 ~vGM~~~~vq~~R~~~ 87 (89)
T 2ebl_A 72 KVGMRREAVQRGSGPS 87 (89)
T ss_dssp HHTCCHHHHSCSCCCC
T ss_pred hccCCHHHcccCCCCC
Confidence 3899999999999886
No 60
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=38.54 E-value=8.5 Score=25.13 Aligned_cols=8 Identities=75% Similarity=1.136 Sum_probs=7.2
Q ss_pred CccccCCc
Q psy3123 402 DSGIESGT 409 (585)
Q Consensus 402 ~~~~~~~~ 409 (585)
||||-||.
T Consensus 14 DSGI~SGa 21 (26)
T 1p22_C 14 DSGIHSGA 21 (26)
T ss_pred ccccccCc
Confidence 99999985
No 61
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=29.52 E-value=13 Score=31.33 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=11.2
Q ss_pred ccccCCCccccCCccch
Q psy3123 16 NARYHNAPVRFGRVPKR 32 (585)
Q Consensus 16 ~VGMSrdAVR~GRvPKr 32 (585)
.|||++++||++|.+.+
T Consensus 75 ~vGM~~~~vq~~R~~~~ 91 (93)
T 2han_A 75 TCGMKREAVQEERQGIH 91 (93)
T ss_dssp HHTCCGGGSCCCC----
T ss_pred HhCCCHHHhhhccCccc
Confidence 38999999998887653
No 62
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=28.60 E-value=15 Score=31.36 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=6.9
Q ss_pred cccccccccccCCC
Q psy3123 9 LKSILKGNARYHNA 22 (585)
Q Consensus 9 ~vGM~kE~VGMSrd 22 (585)
.|||.+|.|..+++
T Consensus 69 ~vGM~~~~vq~~R~ 82 (98)
T 1lo1_A 69 KVGMLKEGVRLDRV 82 (98)
T ss_dssp HHTCCGGGSCSSCC
T ss_pred HcCCCHHHeecccc
Confidence 35555555544443
No 63
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=27.61 E-value=18 Score=30.00 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=12.2
Q ss_pred ccccCCCccccCCcc
Q psy3123 16 NARYHNAPVRFGRVP 30 (585)
Q Consensus 16 ~VGMSrdAVR~GRvP 30 (585)
.|||++++||.+|.+
T Consensus 70 ~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 70 AMGMKREAVQEERQR 84 (85)
T ss_dssp HTTCCGGGSCCCCCC
T ss_pred HcCCCHHHhhcccCC
Confidence 389999999988764
No 64
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=25.34 E-value=16 Score=31.98 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=7.1
Q ss_pred cccccccccccCCC
Q psy3123 9 LKSILKGNARYHNA 22 (585)
Q Consensus 9 ~vGM~kE~VGMSrd 22 (585)
.|||.++.|..+++
T Consensus 74 ~vGM~~~~vq~~R~ 87 (113)
T 2a66_A 74 SVGMKLEAVRADRM 87 (113)
T ss_dssp HTTCCGGGSCTTCC
T ss_pred HhCCCHHHhccccc
Confidence 35555555554444
No 65
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=22.76 E-value=20 Score=29.67 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=4.6
Q ss_pred cccCCCccccCCc
Q psy3123 17 ARYHNAPVRFGRV 29 (585)
Q Consensus 17 VGMSrdAVR~GRv 29 (585)
|||++++||++|.
T Consensus 70 vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 70 VGMMKGGIRKDRR 82 (84)
T ss_dssp HTCCC--------
T ss_pred cCCCHHHhcccCC
Confidence 8999999998874
No 66
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=22.48 E-value=13 Score=31.15 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=10.7
Q ss_pred cccCCCccccCCccch
Q psy3123 17 ARYHNAPVRFGRVPKR 32 (585)
Q Consensus 17 VGMSrdAVR~GRvPKr 32 (585)
|||+++|||++|-.+.
T Consensus 68 ~GM~~~avq~~r~~~~ 83 (90)
T 3g9m_A 68 AGMNLEARKTKKKIKG 83 (90)
T ss_dssp HTCCTTHHHHHC----
T ss_pred cCCCHHHhcccccccc
Confidence 7999999998875543
No 67
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=21.46 E-value=22 Score=28.90 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=9.3
Q ss_pred cccCCCccccCC
Q psy3123 17 ARYHNAPVRFGR 28 (585)
Q Consensus 17 VGMSrdAVR~GR 28 (585)
|||++++||.+|
T Consensus 66 vGM~~~~vq~~R 77 (78)
T 3cbb_A 66 AGMKKEAVQNER 77 (78)
T ss_dssp HTCCGGGCCCC-
T ss_pred cCCCHHHccccC
Confidence 788888888776
No 68
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=20.84 E-value=35 Score=29.05 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.7
Q ss_pred ccccCCCccccCCccc
Q psy3123 16 NARYHNAPVRFGRVPK 31 (585)
Q Consensus 16 ~VGMSrdAVR~GRvPK 31 (585)
.|||++++||++|.+.
T Consensus 69 ~vGM~~~~vq~~R~~~ 84 (98)
T 1lo1_A 69 KVGMLKEGVRLDRVRG 84 (98)
T ss_dssp HHTCCGGGSCSSCCTT
T ss_pred HcCCCHHHeecccccC
Confidence 3899999999998664
No 69
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=20.77 E-value=21 Score=35.32 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred cccCCCccccCCccchHH
Q psy3123 17 ARYHNAPVRFGRVPKREK 34 (585)
Q Consensus 17 VGMSrdAVR~GRvPKreK 34 (585)
|||.++|||.+|.+++++
T Consensus 18 vGMkkeaVq~~R~~~~~~ 35 (282)
T 1lbd_A 18 GSHKREAVQEERQRGKDR 35 (282)
T ss_dssp ------------------
T ss_pred cCCcHHhhcCCCCCCCCC
Confidence 455555666677666543
No 70
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=20.76 E-value=29 Score=30.39 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.7
Q ss_pred ccccCCCccccCCccc
Q psy3123 16 NARYHNAPVRFGRVPK 31 (585)
Q Consensus 16 ~VGMSrdAVR~GRvPK 31 (585)
.|||+.++||.+|++.
T Consensus 74 ~vGM~~~~vq~~R~~~ 89 (113)
T 2a66_A 74 SVGMKLEAVRADRMRG 89 (113)
T ss_dssp HTTCCGGGSCTTCCCS
T ss_pred HhCCCHHHhccccccC
Confidence 4899999999998664
No 71
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=20.29 E-value=20 Score=31.25 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=13.5
Q ss_pred cccCCCccccCCccchHHH
Q psy3123 17 ARYHNAPVRFGRVPKREKA 35 (585)
Q Consensus 17 VGMSrdAVR~GRvPKreK~ 35 (585)
|||++++||.+|..+.++.
T Consensus 72 vGM~~~~v~~~r~~q~~r~ 90 (110)
T 1kb2_A 72 IGMMKEFILTDEEVQRKRE 90 (110)
T ss_dssp TTCCGGGSCCHHHHHHHHH
T ss_pred cCCcHHhcccHHHHhhhhh
Confidence 7888888888776655444
Done!