Your job contains 1 sequence.
>psy3123
MMEDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDD
EQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQEL
LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM
ICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN
KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQ
QQLAAQQQQWHGEDNSKSPTGSSWSDVTMEEVKSPLGSVSSTESVCSNEVATLNEYTSTH
AQNAPLLAATLAGAQCPHRNRANSGSTTDGDRRFRKLDSPTDSGIESGTEKIEKHASAPT
SVCSSPRSSFEEKDFNHVEDMPVLKRILQAPPLDTSSLMDEAYKPHKKFRALRQKDSAEA
EPLHPSLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVI
KPAPPATVTSNALLELQVAATSQPLNLSKKTPPPSPRLSVVSLEA
The BLAST search returned 11 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3123
(585 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0000568 - symbol:Eip75B "Ecdysone-induced protein ... 890 8.9e-112 3
UNIPROTKB|G3V9L8 - symbol:Nr1d1 "Nuclear receptor subfami... 420 9.3e-51 3
ZFIN|ZDB-GENE-050105-1 - symbol:nr1d1 "nuclear receptor s... 432 1.3e-50 3
UNIPROTKB|G3V770 - symbol:Nr1d1 "Nuclear receptor subfami... 420 2.1e-50 3
RGD|628827 - symbol:Nr1d1 "nuclear receptor subfamily 1, ... 420 2.3e-50 3
UNIPROTKB|Q14995 - symbol:NR1D2 "Nuclear receptor subfami... 444 1.6e-49 2
MGI|MGI:2444210 - symbol:Nr1d1 "nuclear receptor subfamil... 420 2.0e-49 3
RGD|628828 - symbol:Nr1d2 "nuclear receptor subfamily 1, ... 448 2.6e-49 2
UNIPROTKB|Q08E02 - symbol:NR1D1 "Nuclear receptor subfami... 420 5.7e-49 3
UNIPROTKB|I3LL46 - symbol:NR1D2 "Uncharacterized protein"... 442 1.1e-48 2
UNIPROTKB|E1BRD5 - symbol:NR1D2 "Uncharacterized protein"... 444 1.8e-48 2
UNIPROTKB|F1NFX1 - symbol:NR1D2 "Uncharacterized protein"... 444 1.8e-48 2
MGI|MGI:2449205 - symbol:Nr1d2 "nuclear receptor subfamil... 442 2.3e-48 2
UNIPROTKB|P20393 - symbol:NR1D1 "Nuclear receptor subfami... 416 2.3e-48 3
UNIPROTKB|E2QXI5 - symbol:NR1D2 "Uncharacterized protein"... 442 3.7e-48 2
ZFIN|ZDB-GENE-990415-244 - symbol:nr1d2b "nuclear recepto... 429 3.3e-47 2
UNIPROTKB|F1MWI2 - symbol:NR1D2 "Uncharacterized protein"... 428 1.1e-46 2
UNIPROTKB|E2R4U0 - symbol:NR1D1 "Uncharacterized protein"... 420 2.8e-46 2
ZFIN|ZDB-GENE-080403-5 - symbol:nr1d4a "nuclear receptor ... 413 3.3e-45 2
ZFIN|ZDB-GENE-040504-1 - symbol:nr1d2a "nuclear receptor ... 380 1.8e-41 2
ZFIN|ZDB-GENE-080403-6 - symbol:nr1d4b "nuclear receptor ... 388 6.1e-39 2
ZFIN|ZDB-GENE-060306-2 - symbol:roraa "RAR-related orphan... 323 5.1e-27 2
UNIPROTKB|F1P5Z9 - symbol:RORA "Uncharacterized protein" ... 312 1.9e-26 2
UNIPROTKB|F1MWS0 - symbol:RORB "Uncharacterized protein" ... 312 2.0e-26 2
RGD|1306778 - symbol:Rorb "RAR-related orphan receptor B"... 313 2.3e-26 2
UNIPROTKB|P45446 - symbol:Rorb "Nuclear receptor ROR-beta... 313 2.3e-26 2
UNIPROTKB|F1LZZ3 - symbol:Rora "Protein Rora" species:101... 311 2.4e-26 2
MGI|MGI:1343464 - symbol:Rorb "RAR-related orphan recepto... 312 3.3e-26 2
RGD|1308419 - symbol:Rora "RAR-related orphan receptor A"... 311 3.8e-26 2
ZFIN|ZDB-GENE-040426-855 - symbol:rorab "RAR-related orph... 312 4.4e-26 2
UNIPROTKB|F1PET8 - symbol:RORB "Uncharacterized protein" ... 311 4.5e-26 2
UNIPROTKB|Q92753 - symbol:RORB "Nuclear receptor ROR-beta... 311 4.5e-26 2
UNIPROTKB|F1P607 - symbol:RORA "Uncharacterized protein" ... 312 6.1e-26 2
ZFIN|ZDB-GENE-061204-2 - symbol:rorb "RAR-related orphan ... 306 1.9e-25 2
UNIPROTKB|Q98934 - symbol:RORB "Uncharacterized protein" ... 305 1.9e-25 2
UNIPROTKB|F1N7R0 - symbol:RORA "Uncharacterized protein" ... 311 1.9e-25 2
MGI|MGI:104661 - symbol:Rora "RAR-related orphan receptor... 311 1.9e-25 2
UNIPROTKB|F1S075 - symbol:RORA "Uncharacterized protein" ... 309 2.4e-25 2
ZFIN|ZDB-GENE-040724-215 - symbol:rorcb "RAR-related orph... 304 2.6e-25 2
UNIPROTKB|E1C5M3 - symbol:RORB "Uncharacterized protein" ... 305 2.9e-25 2
UNIPROTKB|P35398 - symbol:RORA "Nuclear receptor ROR-alph... 311 3.4e-25 2
UNIPROTKB|F1NML9 - symbol:RORA "Uncharacterized protein" ... 302 6.9e-25 2
ZFIN|ZDB-GENE-110411-42 - symbol:si:dkey-80m2.2 "si:dkey-... 294 2.4e-24 2
UNIPROTKB|Q8HYL6 - symbol:PPARA "Peroxisome proliferator-... 301 2.5e-24 1
UNIPROTKB|F1SM76 - symbol:PPARA "Uncharacterized protein"... 295 1.3e-23 1
UNIPROTKB|Q95N78 - symbol:PPARA "Peroxisome proliferator-... 293 2.3e-23 1
UNIPROTKB|Q9I878 - symbol:PPAR gamma "Uncharacterized pro... 289 7.4e-23 1
UNIPROTKB|Q07869 - symbol:PPARA "Peroxisome proliferator-... 288 8.8e-23 1
UNIPROTKB|Q5EA13 - symbol:PPARA "Peroxisome proliferative... 287 1.2e-22 1
UNIPROTKB|F1NRA6 - symbol:PPARA "Uncharacterized protein"... 285 2.0e-22 1
UNIPROTKB|O35507 - symbol:PPARA "Peroxisome proliferator-... 280 7.5e-22 1
ZFIN|ZDB-GENE-990415-211 - symbol:pparab "peroxisome prol... 277 1.6e-21 1
UNIPROTKB|O18971 - symbol:PPARG "Peroxisome proliferator-... 276 3.0e-21 1
UNIPROTKB|O19052 - symbol:PPARG "Peroxisome proliferator-... 275 3.1e-21 1
RGD|3369 - symbol:Ppara "peroxisome proliferator activate... 274 3.7e-21 1
UNIPROTKB|F1NX54 - symbol:PPARA "Uncharacterized protein"... 274 4.0e-21 1
UNIPROTKB|O62807 - symbol:PPARG "Peroxisome proliferator-... 275 4.0e-21 1
UNIPROTKB|E9PFV2 - symbol:PPARG "Peroxisome proliferator-... 274 4.3e-21 1
UNIPROTKB|F5H830 - symbol:PPARD "Peroxisome proliferator-... 255 4.5e-21 1
UNIPROTKB|Q4U3Q4 - symbol:PPARG "Peroxisome proliferator-... 274 5.2e-21 1
UNIPROTKB|P37231 - symbol:PPARG "Peroxisome proliferator-... 274 5.2e-21 1
UNIPROTKB|O18924 - symbol:PPARG "Peroxisome proliferator-... 274 5.2e-21 1
UNIPROTKB|F1RS46 - symbol:RARB "Uncharacterized protein" ... 253 7.5e-21 1
UNIPROTKB|Q95KZ8 - symbol:PPARgamma2 "Peroxisome prolifer... 272 8.7e-21 1
UNIPROTKB|P57797 - symbol:PPARG "Peroxisome proliferator-... 271 8.8e-21 1
MGI|MGI:104740 - symbol:Ppara "peroxisome proliferator ac... 270 1.1e-20 1
RGD|3371 - symbol:Pparg "peroxisome proliferator-activate... 271 1.1e-20 1
UNIPROTKB|I3L6W7 - symbol:LOC100624946 "Uncharacterized p... 251 1.2e-20 1
UNIPROTKB|E2RGP7 - symbol:RORC "Uncharacterized protein" ... 272 1.5e-20 2
FB|FBgn0000448 - symbol:Hr46 "Hormone receptor-like in 46... 272 1.5e-20 2
UNIPROTKB|F1NRA8 - symbol:PPARA "Uncharacterized protein"... 250 1.6e-20 1
UNIPROTKB|I3L553 - symbol:RORC "Uncharacterized protein" ... 273 2.1e-20 2
FB|FBgn0004865 - symbol:Eip78C "Ecdysone-induced protein ... 274 2.3e-20 2
MGI|MGI:97747 - symbol:Pparg "peroxisome proliferator act... 268 2.5e-20 1
UNIPROTKB|P51449 - symbol:RORC "Nuclear receptor ROR-gamm... 270 2.6e-20 2
UNIPROTKB|F1NQH5 - symbol:RARB "Retinoic acid receptor be... 257 2.8e-20 1
ZFIN|ZDB-GENE-041210-169 - symbol:pparaa "peroxisome prol... 266 3.2e-20 1
ZFIN|ZDB-GENE-990415-213 - symbol:pparg "peroxisome proli... 267 3.7e-20 1
UNIPROTKB|H7BYJ4 - symbol:RORC "Nuclear receptor ROR-gamm... 270 4.7e-20 2
UNIPROTKB|Q99ND3 - symbol:Ppard "Protein Ppard" species:1... 262 6.6e-20 1
RGD|3370 - symbol:Ppard "peroxisome proliferator-activate... 234 6.8e-20 2
UNIPROTKB|F1RXC3 - symbol:NR1D1 "Uncharacterized protein"... 244 7.1e-20 1
UNIPROTKB|D6RBI3 - symbol:RARB "Retinoic acid receptor be... 259 8.3e-20 1
MGI|MGI:101884 - symbol:Ppard "peroxisome proliferator ac... 259 1.5e-19 1
UNIPROTKB|P10826 - symbol:RARB "Retinoic acid receptor be... 259 1.7e-19 1
UNIPROTKB|F1N9Q8 - symbol:RARB "Retinoic acid receptor be... 257 1.8e-19 1
UNIPROTKB|P22448 - symbol:RARB "Retinoic acid receptor be... 257 2.9e-19 1
UNIPROTKB|Q90966 - symbol:RARA "Retinoic acid receptor al... 257 3.1e-19 1
UNIPROTKB|F1NHW8 - symbol:PPARD "Uncharacterized protein"... 256 3.4e-19 1
UNIPROTKB|Q03181 - symbol:PPARD "Peroxisome proliferator-... 255 4.3e-19 1
UNIPROTKB|F1LNV3 - symbol:F1LNV3 "Uncharacterized protein... 256 4.9e-19 1
RGD|1595785 - symbol:Rorc "RAR-related orphan receptor C"... 256 5.6e-19 1
UNIPROTKB|E2R2A6 - symbol:RARB "Uncharacterized protein" ... 253 7.9e-19 1
UNIPROTKB|A4IFL4 - symbol:PPARD "Uncharacterized protein"... 252 9.5e-19 1
MGI|MGI:97857 - symbol:Rarb "retinoic acid receptor, beta... 253 1.0e-18 1
UNIPROTKB|A9XAM2 - symbol:PPARD "Peroxisome proliferator-... 250 1.6e-18 1
ZFIN|ZDB-GENE-980526-72 - symbol:rarab "retinoic acid rec... 250 1.9e-18 1
UNIPROTKB|F1N7B3 - symbol:RORC "Uncharacterized protein" ... 251 2.0e-18 1
UNIPROTKB|Q0ZAQ8 - symbol:PPARD "Peroxisome proliferator-... 249 2.1e-18 1
UNIPROTKB|G3X6X1 - symbol:G3X6X1 "Uncharacterized protein... 248 2.8e-18 1
WARNING: Descriptions of 278 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0000568 [details] [associations]
symbol:Eip75B "Ecdysone-induced protein 75B" species:7227
"Drosophila melanogaster" [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS;NAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA;NAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;NAS] [GO:0007591
"molting cycle, chitin-based cuticle" evidence=IMP;NAS] [GO:0048477
"oogenesis" evidence=NAS] [GO:0035072 "ecdysone-mediated induction
of salivary gland cell autophagic cell death" evidence=NAS]
[GO:0018990 "ecdysis, chitin-based cuticle" evidence=IMP]
[GO:0007553 "regulation of ecdysteroid metabolic process"
evidence=IMP] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0020037 "heme binding" evidence=IDA] [GO:0003677
"DNA binding" evidence=IDA] [GO:0035075 "response to ecdysone"
evidence=IMP] [GO:0010468 "regulation of gene expression"
evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 EMBL:AE014296
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0048477 GO:GO:0020037 GO:GO:0019730 GO:GO:0035072
GO:GO:0004887 GO:GO:0018990 GeneTree:ENSGT00700000104361 KO:K08701
UniGene:Dm.21411 GeneID:39999 KEGG:dme:Dmel_CG8127 CTD:39999
FlyBase:FBgn0000568 GenomeRNAi:39999 NextBio:816484
GermOnline:CG8127 GO:GO:0007553 EMBL:X15586 PIR:S05979
RefSeq:NP_001246821.1 RefSeq:NP_001246822.1 RefSeq:NP_730321.1
ProteinModelPortal:P13055 SMR:P13055 STRING:P13055
EnsemblMetazoa:FBtr0075148 EnsemblMetazoa:FBtr0306813
EnsemblMetazoa:FBtr0306814 InParanoid:P13055 PhylomeDB:P13055
Bgee:P13055 Uniprot:P13055
Length = 1412
Score = 890 (318.4 bits), Expect = 8.9e-112, Sum P(3) = 8.9e-112
Identities = 200/387 (51%), Positives = 264/387 (68%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGRVPKREKARILAAMQQST + ++ALA ELDD+ R+L+ V+RAHL+TC FT +K+
Sbjct: 529 VRFGRVPKREKARILAAMQQSTQNRGQQRALATELDDQPRLLAAVLRAHLETCEFTKEKV 588
Query: 84 EPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIP 143
M +RAR+ P+Y+ P+ LACPLNP + LQ +QE FS+RF+ IR V++FA IP
Sbjct: 589 SAMRQRARDCPSYSM-PTLLACPLNP-APELQSEQE----FSQRFAHVIRGVIDFAGMIP 642
Query: 144 GFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHS-SNARFLM 202
GF LL DD+ TLLKAG+F+ L VRL CMFDS NS+ICLNG+V+ RD+I + +NARFL+
Sbjct: 643 GFQLLTQDDKFTLLKAGLFDALFVRLICMFDSSINSIICLNGQVMRRDAIQNGANARFLV 702
Query: 203 DSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQN 262
DS F+FAER+N ++L+D EIGLF +IV+I+P R GLRN EL+E+M +L+ L +++ QN
Sbjct: 703 DSTFNFAERMNSMNLTDAEIGLFCAIVLITPDRPGLRNLELIEKMYSRLKGCLQYIVAQN 762
Query: 263 HPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEXXXXXXXXXXXWHGED--NS---- 316
P+Q A+L+ +PDLRTL+ LH+EKLV F+ TE W ED NS
Sbjct: 763 RPDQPEFLAKLLETMPDLRTLSTLHTEKLVVFR-TEHKELLRQQM--WSMEDGNNSDGQQ 819
Query: 317 -KSPTGSSWSD-VTMEEVKSPLGSVSSTESV-------CSNEVATLNEYTSTHAQNAPL- 366
KSP+GS W+D + +E KSPLGSVSSTES S++ ++ + Q + L
Sbjct: 820 NKSPSGS-WADAMDVEAAKSPLGSVSSTESADLDYGSPSSSQPQGVSLPSPPQQQPSALA 878
Query: 367 ----LAATLAGAQCPHRNRANSGSTTD 389
L A CP RNRANSGS+ D
Sbjct: 879 SSAPLLAATLSGGCPLRNRANSGSSGD 905
Score = 196 (74.1 bits), Expect = 8.9e-112, Sum P(3) = 8.9e-112
Identities = 57/133 (42%), Positives = 76/133 (57%)
Query: 382 ANSGSTTDGDRRFRKLDSPTD-SGIESGTEKIEKHASAPTSVCSSPRSSFEEKDFNH--- 437
++ GS++ R +D D S + ++ +H V SP S + +H
Sbjct: 1005 SSGGSSSCSSPR-SSVDDALDCSDAAANHNQVVQHPQLSV-VSVSPVRSPQPSTSSHLKR 1062
Query: 438 --VEDMPVLKRILQAPPL-DTSSLMDEAYKPHKKFRALRQKDSAEAEPLHPSLASSHSML 494
VEDMPVLKR+LQAPPL DT+SLMDEAYKPHKKFRALR ++ AE + ASS +
Sbjct: 1063 QIVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRHREFETAE----ADASSSTSG 1118
Query: 495 AKSLMEG-PRMTP 506
+ SL G PR +P
Sbjct: 1119 SNSLSAGSPRQSP 1131
Score = 137 (53.3 bits), Expect = 1.4e-111, Sum P(3) = 1.4e-111
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 486 SLASSHSMLAKSLMEGPRMTPDQLKRTEIVHNYIMRTDSPPSAYFPRS-WHSSSVIKPAP 544
S+ASSHS+LAKSLM PRMTP+Q+KR++I+ NY+ R +S ++ + S P
Sbjct: 1168 SMASSHSVLAKSLMAEPRMTPEQMKRSDIIQNYLKRENSTAASSTTNGVGNRSPSSSSTP 1227
Query: 545 PATVTSN 551
P + N
Sbjct: 1228 PPSAVQN 1234
Score = 131 (51.2 bits), Expect = 1.4e-111, Sum P(3) = 1.4e-111
Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 388 TDGDRRFRKLDSPTDSGIESGTEKIEKHA--SAPTSVCSSPRSSFEE 432
T G R+RKLDSPTDSGIESG EK E A S +S CSSPRSS ++
Sbjct: 975 TAGAARYRKLDSPTDSGIESGNEKNECKAVSSGGSSSCSSPRSSVDD 1021
Score = 74 (31.1 bits), Expect = 8.9e-112, Sum P(3) = 8.9e-112
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 522 TDSPPSAYFPRSWHSSSVIKPAPPATVT-SNA---LLELQV--AATSQPLNLSKKT 571
+ S S + +S HS+S AP ++ + SN+ LLELQV A ++QPLNLSKK+
Sbjct: 1285 SSSASSCQYFQSPHSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKS 1340
>UNIPROTKB|G3V9L8 [details] [associations]
symbol:Nr1d1 "Nuclear receptor subfamily 1 group D member
1" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IEA]
[GO:0034144 "negative regulation of toll-like receptor 4 signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:628827 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:CH473948
GeneTree:ENSGT00700000104109 CTD:9572 KO:K03728 RefSeq:NP_665718.2
UniGene:Rn.29848 GeneID:252917 KEGG:rno:252917 NextBio:624049
Ensembl:ENSRNOT00000055333 Uniprot:G3V9L8
Length = 508
Score = 420 (152.9 bits), Expect = 9.3e-51, Sum P(3) = 9.3e-51
Identities = 85/196 (43%), Positives = 131/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 310 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 369
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 370 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 429
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 430 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 489
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 490 RTLNNMHSEKLLSFRV 505
Score = 84 (34.6 bits), Expect = 9.3e-51, Sum P(3) = 9.3e-51
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 97 VRFGRIPKREKQRMLAEMQNAMN 119
Score = 52 (23.4 bits), Expect = 9.3e-51, Sum P(3) = 9.3e-51
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 64 MLSTVVRAHLDTCAFTADKI--EP---MLRRAREHPTYTA--CPSTLACPLNPNSHPLQG 116
++S V RAH + + DK+ P A P T C + CP PN + L
Sbjct: 182 VISQVARAHREIFTYAHDKLGTSPGNFNANHASGSPPATTPQCWESQGCPSTPNDNNLLA 241
Query: 117 QQ 118
Q
Sbjct: 242 AQ 243
>ZFIN|ZDB-GENE-050105-1 [details] [associations]
symbol:nr1d1 "nuclear receptor subfamily 1, group d,
member 1" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004887
"thyroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0001078 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in negative regulation of transcription" evidence=IDA;IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-050105-1
GO:GO:0005634 GO:GO:0046872 GO:GO:0001078 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0004887 CTD:9572 HOGENOM:HOG000261691
KO:K03728 HOVERGEN:HBG106790 HSSP:P20393 EMBL:AY391444
IPI:IPI00998148 RefSeq:NP_991292.1 UniGene:Dr.85991
ProteinModelPortal:Q6TNS3 SMR:Q6TNS3 STRING:Q6TNS3 GeneID:494487
KEGG:dre:494487 NextBio:20865711 Bgee:Q6TNS3 Uniprot:Q6TNS3
Length = 637
Score = 432 (157.1 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 87/196 (44%), Positives = 133/196 (67%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N P S P + QE+ +DFS F+P +R+VVEFAK IPGFS L +DQVTLLKAG
Sbjct: 440 LACPMNMHPYSDPNKTPQEIWEDFSLSFTPAVREVVEFAKHIPGFSTLSQNDQVTLLKAG 499
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR + +F+ + ++ ++G +++ S L+ +MFDF+E+LN L LS
Sbjct: 500 TFEVLMVRFSSLFNVKEKTVTFISGATYSLEALKSMGMGDLLGTMFDFSEKLNSLELSAE 559
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE ++ L L +++++ P + +L+ LPDL
Sbjct: 560 ELGLFTAVVLVSADRSGIENVNSVEMLQESLIRALRTLVSKSAPTDASRFTKLLLKLPDL 619
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 620 RTLNNMHSEKLLSFRI 635
Score = 84 (34.6 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 199 VRFGRIPKREKQRMLAEMQNAMN 221
Score = 44 (20.5 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 63 RMLSTVVRAHLDTCAFTADKI-EPML 87
+ ++ + RAH +T + DK+ P+L
Sbjct: 313 KTIAAITRAHRETFIYAHDKLGSPLL 338
>UNIPROTKB|G3V770 [details] [associations]
symbol:Nr1d1 "Nuclear receptor subfamily 1 group D member
1" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IEA]
[GO:0034144 "negative regulation of toll-like receptor 4 signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:628827 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:CH473948
GeneTree:ENSGT00700000104109 OMA:SCHQPNS UniGene:Rn.29848
Ensembl:ENSRNOT00000012537 Uniprot:G3V770
Length = 614
Score = 420 (152.9 bits), Expect = 2.1e-50, Sum P(3) = 2.1e-50
Identities = 85/196 (43%), Positives = 131/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 596 RTLNNMHSEKLLSFRV 611
Score = 84 (34.6 bits), Expect = 2.1e-50, Sum P(3) = 2.1e-50
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 203 VRFGRIPKREKQRMLAEMQNAMN 225
Score = 52 (23.4 bits), Expect = 2.1e-50, Sum P(3) = 2.1e-50
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 64 MLSTVVRAHLDTCAFTADKI--EP---MLRRAREHPTYTA--CPSTLACPLNPNSHPLQG 116
++S V RAH + + DK+ P A P T C + CP PN + L
Sbjct: 288 VISQVARAHREIFTYAHDKLGTSPGNFNANHASGSPPATTPQCWESQGCPSTPNDNNLLA 347
Query: 117 QQ 118
Q
Sbjct: 348 AQ 349
>RGD|628827 [details] [associations]
symbol:Nr1d1 "nuclear receptor subfamily 1, group D, member 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0007623 "circadian
rhythm" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0034144 "negative regulation of toll-like
receptor 4 signaling pathway" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO]
[GO:2000189 "positive regulation of cholesterol homeostasis"
evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
RGD:628827 GO:GO:0046872 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 eggNOG:NOG324222 GO:GO:0034144 CTD:9572
HOGENOM:HOG000261691 KO:K03728 OrthoDB:EOG4DV5KZ GO:GO:0010871
HOVERGEN:HBG106790 EMBL:BC062047 EMBL:M25804 IPI:IPI00421519
PIR:A30226 RefSeq:NP_001106893.1 RefSeq:NP_665718.2
UniGene:Rn.29848 ProteinModelPortal:Q63503 SMR:Q63503 STRING:Q63503
GeneID:252917 KEGG:rno:252917 UCSC:RGD:628827 InParanoid:Q63503
NextBio:624049 Genevestigator:Q63503 GermOnline:ENSRNOG00000009329
Uniprot:Q63503
Length = 615
Score = 420 (152.9 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 85/196 (43%), Positives = 131/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQKTLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 597 RTLNNMHSEKLLSFRV 612
Score = 84 (34.6 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQNAMN 226
Score = 52 (23.4 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 64 MLSTVVRAHLDTCAFTADKI--EP---MLRRAREHPTYTA--CPSTLACPLNPNSHPLQG 116
++S V RAH + + DK+ P A P T C + CP PN + L
Sbjct: 289 VISQVARAHREIFTYAHDKLGTSPGNFNANHASGSPPATTPQCWESQGCPSTPNDNNLLA 348
Query: 117 QQ 118
Q
Sbjct: 349 AQ 350
>UNIPROTKB|Q14995 [details] [associations]
symbol:NR1D2 "Nuclear receptor subfamily 1 group D member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005654 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006367 eggNOG:NOG324222 HOGENOM:HOG000261691
HOVERGEN:HBG106790 EMBL:D16815 EMBL:AK313464 EMBL:AC124914
EMBL:BC045613 EMBL:L31785 IPI:IPI00788022 PIR:A57057
RefSeq:NP_005117.3 UniGene:Hs.37288 PDB:2V0V PDB:2V7C PDB:3CQV
PDBsum:2V0V PDBsum:2V7C PDBsum:3CQV ProteinModelPortal:Q14995
SMR:Q14995 STRING:Q14995 PhosphoSite:Q14995 DMDM:215274122
PRIDE:Q14995 DNASU:9975 Ensembl:ENST00000312521
Ensembl:ENST00000396676 GeneID:9975 KEGG:hsa:9975 CTD:9975
GeneCards:GC03P023961 HGNC:HGNC:7963 MIM:602304 neXtProt:NX_Q14995
PharmGKB:PA31749 InParanoid:Q14995 KO:K08531 OMA:MMNSQFS
OrthoDB:EOG4V170J BindingDB:Q14995 ChEMBL:CHEMBL1961784
EvolutionaryTrace:Q14995 GenomeRNAi:9975 NextBio:37672
ArrayExpress:Q14995 Bgee:Q14995 CleanEx:HS_NR1D2
Genevestigator:Q14995 GermOnline:ENSG00000174738 Uniprot:Q14995
Length = 579
Score = 444 (161.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 88/196 (44%), Positives = 134/196 (68%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CPL+ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 382 LVCPLSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 441
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 442 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 501
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 502 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 561
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 562 RSLNNMHSEELLAFKV 577
Score = 89 (36.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGR+PKREK R+L MQ + T + + L ++ T+V H T +++
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ-FSGHLQND-----TLVEHHEQTALPAQEQL 227
Query: 84 EPMLRRAREHPTYTACPST 102
P + +E+ ++ PS+
Sbjct: 228 RPKPQLEQENIKSSSPPSS 246
Score = 45 (20.9 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 29 VPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIE 84
+P +E+ R ++Q N K + +++ E+ ++ V RAH DT + ++ E
Sbjct: 221 LPAQEQLRPKPQLEQE-NIKSSSPP-SSDFAKEE-VIGMVTRAHKDTFMYNQEQQE 273
>MGI|MGI:2444210 [details] [associations]
symbol:Nr1d1 "nuclear receptor subfamily 1, group D, member
1" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007623 "circadian rhythm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0034144 "negative regulation of toll-like
receptor 4 signaling pathway" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=ISO] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:2444210 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 Reactome:REACT_109335
Reactome:REACT_24972 EMBL:AL590963 eggNOG:NOG324222 HSSP:P03372
GeneTree:ENSGT00700000104109 GO:GO:0034144 CTD:9572
HOGENOM:HOG000261691 KO:K03728 OMA:SCHQPNS OrthoDB:EOG4DV5KZ
GO:GO:0010871 HOVERGEN:HBG106790 EMBL:AK137398 EMBL:AK137582
EMBL:AK146430 EMBL:AK154931 EMBL:AK155597 EMBL:BC008989
EMBL:AF291821 EMBL:X86010 EMBL:AY336125 IPI:IPI00122690 PIR:S52813
RefSeq:NP_663409.2 UniGene:Mm.390397 ProteinModelPortal:Q3UV55
SMR:Q3UV55 DIP:DIP-59440N STRING:Q3UV55 PhosphoSite:Q3UV55
PRIDE:Q3UV55 Ensembl:ENSMUST00000064941 GeneID:217166
KEGG:mmu:217166 UCSC:uc007lhh.1 InParanoid:Q3UV55 NextBio:375617
Bgee:Q3UV55 CleanEx:MM_NR1D1 Genevestigator:Q3UV55 Uniprot:Q3UV55
Length = 615
Score = 420 (152.9 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 85/196 (43%), Positives = 131/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 417 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 476
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 477 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 536
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 537 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 596
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 597 RTLNNMHSEKLLSFRV 612
Score = 84 (34.6 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQSAMN 226
Score = 43 (20.2 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 64 MLSTVVRAHLDTCAFTADKI--EP---MLRRAREHPTYTACP---STLACPLNPNSHPLQ 115
++S V RAH + + DK+ P A P+ T P + CP PN + L
Sbjct: 289 VISQVARAHREIFTYAHDKLGTSPGNFNANHASGSPSATT-PHRWESQGCPSAPNDNNLL 347
Query: 116 GQQ 118
Q
Sbjct: 348 AAQ 350
>RGD|628828 [details] [associations]
symbol:Nr1d2 "nuclear receptor subfamily 1, group D, member 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
RGD:628828 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 HOVERGEN:HBG106790 EMBL:X82777
EMBL:X78135 EMBL:U20796 IPI:IPI00209944 IPI:IPI00230783 PIR:S52913
UniGene:Rn.10055 ProteinModelPortal:Q63504 SMR:Q63504
PhosphoSite:Q63504 PRIDE:Q63504 Genevestigator:Q63504
Uniprot:Q63504
Length = 578
Score = 448 (162.8 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 88/196 (44%), Positives = 134/196 (68%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 381 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 440
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LNGL LSD
Sbjct: 441 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNGLQLSDE 500
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 501 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 560
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 561 RSLNNMHSEELLAFKV 576
Score = 83 (34.3 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGR+PKREK R+L MQ + T + + L + T+ H + +++
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMSTQ-FGGHLQSD-----TLAEPHEQSVPPAQEQL 227
Query: 84 EPMLRRAREHPTYTACPSTLA 104
P + +E+ T PS A
Sbjct: 228 RPKPQLEQENIKSTPPPSDFA 248
Score = 42 (19.8 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 30 PKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIE 84
P +E+ R ++Q N K T ++ E+ ++ V RAH DT + + E
Sbjct: 222 PAQEQLRPKPQLEQE-NIKSTPPP--SDFAKEE-VIGMVTRAHKDTFLYNQEHRE 272
>UNIPROTKB|Q08E02 [details] [associations]
symbol:NR1D1 "Nuclear receptor subfamily 1 group D member
1" species:9913 "Bos taurus" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0034144 "negative
regulation of toll-like receptor 4 signaling pathway" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0046872 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 GO:GO:0034144 EMBL:BC123488
IPI:IPI00716259 RefSeq:NP_001071568.1 UniGene:Bt.65340
ProteinModelPortal:Q08E02 SMR:Q08E02 STRING:Q08E02 PRIDE:Q08E02
Ensembl:ENSBTAT00000016154 GeneID:768225 KEGG:bta:768225 CTD:9572
HOGENOM:HOG000261691 InParanoid:Q08E02 KO:K03728 OMA:SCHQPNS
OrthoDB:EOG4DV5KZ NextBio:20918523 GO:GO:0010871 Uniprot:Q08E02
Length = 613
Score = 420 (152.9 bits), Expect = 5.7e-49, Sum P(3) = 5.7e-49
Identities = 85/196 (43%), Positives = 131/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 415 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 474
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 475 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 534
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 535 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 594
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 595 RTLNNMHSEKLLSFRV 610
Score = 84 (34.6 bits), Expect = 5.7e-49, Sum P(3) = 5.7e-49
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 204 VRFGRIPKREKQRMLAEMQSAMN 226
Score = 38 (18.4 bits), Expect = 5.7e-49, Sum P(3) = 5.7e-49
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 64 MLSTVVRAHLDTCAFTADKI 83
++S V RAH + + DK+
Sbjct: 289 VISQVARAHREIFTYAHDKL 308
>UNIPROTKB|I3LL46 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 OMA:MMNSQFS EMBL:FP085569
Ensembl:ENSSSCT00000025072 Uniprot:I3LL46
Length = 573
Score = 442 (160.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 87/196 (44%), Positives = 134/196 (68%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 376 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 435
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 436 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 495
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 496 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 555
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 556 RSLNNMHSEELLAFKV 571
Score = 83 (34.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKI 83
VRFGR+PKREK R+L MQ + T + + L + +V H T +++
Sbjct: 169 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ-FSGHLQSD-----ALVEHHEQTALPVQEQL 222
Query: 84 EPMLRRAREHPTYTACPST 102
P + +E+ ++ PS+
Sbjct: 223 RPKPQLEQENIKSSSPPSS 241
Score = 44 (20.5 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 29 VPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIE 84
+P +E+ R ++Q N K + +++ E+ ++ V RAH DT + ++ E
Sbjct: 216 LPVQEQLRPKPQLEQE-NIKSSSPP-SSDFAKEE-VIGMVTRAHKDTFMYNQEQRE 268
>UNIPROTKB|E1BRD5 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 OMA:MMNSQFS EMBL:AADN02001116
EMBL:AADN02001117 EMBL:AADN02001118 IPI:IPI00821361
Ensembl:ENSGALT00000018420 Uniprot:E1BRD5
Length = 575
Score = 444 (161.4 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 87/196 (44%), Positives = 134/196 (68%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ H P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 378 LVCPMSKTPHVDPNKSGHEVWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 437
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 438 TFEVLMVRFASLFDARERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 497
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 498 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 557
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 558 RSLNNMHSEELLAFKV 573
Score = 79 (32.9 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
VRFGR+PKREK R+L MQ + T + ++ L +E
Sbjct: 175 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ-FSSHLPNE 211
>UNIPROTKB|F1NFX1 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00700000104109 EMBL:AADN02001116 EMBL:AADN02001117
EMBL:AADN02001118 IPI:IPI00584067 Ensembl:ENSGALT00000031164
Uniprot:F1NFX1
Length = 548
Score = 444 (161.4 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 87/196 (44%), Positives = 134/196 (68%)
Query: 103 LACPLNPNSH--PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ H P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 351 LVCPMSKTPHVDPNKSGHEVWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 410
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 411 TFEVLMVRFASLFDARERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 470
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 471 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 530
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 531 RSLNNMHSEELLAFKV 546
Score = 79 (32.9 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDE 61
VRFGR+PKREK R+L MQ + T + ++ L +E
Sbjct: 148 VRFGRIPKREKQRMLIEMQSAMKTMMNSQ-FSSHLPNE 184
>MGI|MGI:2449205 [details] [associations]
symbol:Nr1d2 "nuclear receptor subfamily 1, group D, member
2" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004887 "thyroid
hormone receptor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 EMBL:U09504 MGI:MGI:2449205 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0004887 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 HOGENOM:HOG000261691
HOVERGEN:HBG106790 CTD:9975 KO:K08531 OMA:MMNSQFS OrthoDB:EOG4V170J
EMBL:U12142 IPI:IPI00119178 PIR:A57048 RefSeq:NP_035714.3
UniGene:Mm.26587 PDB:1EFJ PDBsum:1EFJ ProteinModelPortal:Q60674
SMR:Q60674 IntAct:Q60674 STRING:Q60674 PhosphoSite:Q60674
PRIDE:Q60674 Ensembl:ENSMUST00000090543 GeneID:353187
KEGG:mmu:353187 InParanoid:Q60674 NextBio:400331 Bgee:Q60674
CleanEx:MM_NR1D2 Genevestigator:Q60674
GermOnline:ENSMUSG00000021775 Uniprot:Q60674
Length = 576
Score = 442 (160.7 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 87/196 (44%), Positives = 133/196 (67%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L+ SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
Score = 80 (33.2 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTA-DK 82
VRFGR+PKREK R+L MQ + T + + L ++ T+ H D A A ++
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKTMMNTQ-FSGHLQND-----TLAEQH-DQSALPAQEQ 226
Query: 83 IEPMLRRAREHPTYTACPSTLA 104
+ P + +E+ T PS A
Sbjct: 227 LRPKSQLEQENIKNT--PSDFA 246
Score = 47 (21.6 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 29 VPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIE 84
+P +E+ R + ++Q N K T A E ++ V RAH DT + + E
Sbjct: 221 LPAQEQLRPKSQLEQE-NIKNTPSDFAKE-----EVIGMVTRAHKDTFLYNQEHRE 270
>UNIPROTKB|P20393 [details] [associations]
symbol:NR1D1 "Nuclear receptor subfamily 1 group D member
1" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0003714 "transcription
corepressor activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0010871 "negative regulation of receptor
biosynthetic process" evidence=IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0034144 "negative regulation of toll-like
receptor 4 signaling pathway" evidence=IMP] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:2000189 "positive regulation of
cholesterol homeostasis" evidence=IDA] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0003714 GO:GO:0005654 GO:GO:0046872 GO:GO:0007623
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071222
GO:GO:0000122 GO:GO:0044212 GO:GO:0000790 GO:GO:0006367
Pathway_Interaction_DB:circadianpathway Reactome:REACT_24941
eggNOG:NOG324222 GO:GO:0034144 PDB:3N00 PDBsum:3N00 CTD:9572
HOGENOM:HOG000261691 KO:K03728 OMA:SCHQPNS OrthoDB:EOG4DV5KZ
GO:GO:0010871 EMBL:M24898 EMBL:M24900 EMBL:X55066 EMBL:X55067
EMBL:X72631 EMBL:BC047875 EMBL:BC056148 EMBL:M34339 EMBL:M34340
IPI:IPI00023603 PIR:A32286 RefSeq:NP_068370.1 UniGene:Hs.592130
UniGene:Hs.724 PDB:1A6Y PDB:1EF6 PDB:1GA5 PDB:1HLZ PDBsum:1A6Y
PDBsum:1EF6 PDBsum:1GA5 PDBsum:1HLZ ProteinModelPortal:P20393
SMR:P20393 DIP:DIP-48396N IntAct:P20393 STRING:P20393
PhosphoSite:P20393 DMDM:119100 PRIDE:P20393 DNASU:9572
Ensembl:ENST00000246672 GeneID:9572 KEGG:hsa:9572 UCSC:uc002htz.2
GeneCards:GC17M038249 HGNC:HGNC:7962 HPA:HPA007935 MIM:602408
neXtProt:NX_P20393 PharmGKB:PA31748 HOVERGEN:HBG106790
InParanoid:P20393 BindingDB:P20393 ChEMBL:CHEMBL1961783
ChiTaRS:NR1D1 EvolutionaryTrace:P20393 GenomeRNAi:9572
NextBio:35899 ArrayExpress:P20393 Bgee:P20393 CleanEx:HS_NR1D1
Genevestigator:P20393 GermOnline:ENSG00000126368 Uniprot:P20393
Length = 614
Score = 416 (151.5 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 85/196 (43%), Positives = 130/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 416 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 475
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+ +MFDF+E+LN L L++
Sbjct: 476 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEE 535
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 536 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLPDL 595
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 596 RTLNNMHSEKLLSFRV 611
Score = 84 (34.6 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 203 VRFGRIPKREKQRMLAEMQSAMN 225
Score = 38 (18.4 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 64 MLSTVVRAHLDTCAFTADKI 83
++S V RAH + + DK+
Sbjct: 288 VISQVARAHREIFTYAHDKL 307
>UNIPROTKB|E2QXI5 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00700000104109 CTD:9975 KO:K08531 OMA:MMNSQFS
EMBL:AAEX03013558 RefSeq:XP_542763.2 Ensembl:ENSCAFT00000009281
GeneID:485643 KEGG:cfa:485643 NextBio:20859594 Uniprot:E2QXI5
Length = 576
Score = 442 (160.7 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 87/196 (44%), Positives = 134/196 (68%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 379 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 439 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF+++V++S RSG+ N VE ++ L L ++ +NHP + ++ +L+ LPDL
Sbjct: 499 EMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
R+LN +HSE+L+AF++
Sbjct: 559 RSLNNMHSEELLAFKV 574
Score = 78 (32.5 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 24 VRFGRVPKREKARILAAMQQSTNT 47
VRFGR+PKREK R+L MQ + T
Sbjct: 174 VRFGRIPKREKQRMLIEMQSAMKT 197
Score = 43 (20.2 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 29 VPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIE 84
+P +E+ R ++Q N K + + D+ ++ V RAH DT + ++ E
Sbjct: 220 LPAQEQLRPKPQLEQE-NIKSSSPSSDFAKDE---VIGMVTRAHKDTFMYNQEQRE 271
>ZFIN|ZDB-GENE-990415-244 [details] [associations]
symbol:nr1d2b "nuclear receptor subfamily 1, group
D, member 2b" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-244 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 HOGENOM:HOG000261691 HOVERGEN:HBG106790 HSSP:P20393
EMBL:AF342942 IPI:IPI00508129 UniGene:Dr.82830
ProteinModelPortal:Q90Z64 STRING:Q90Z64 InParanoid:Q90Z64
ArrayExpress:Q90Z64 Uniprot:Q90Z64
Length = 592
Score = 429 (156.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 89/206 (43%), Positives = 133/206 (64%)
Query: 94 PTYT-ACPSTLACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCH 150
PT+ A L CP+N P P + + ++FS F+P +R+VVEFAKRIPGF L
Sbjct: 385 PTFPRANRMHLVCPMNTSPYVDPQKSGHSIWEEFSMSFTPAVREVVEFAKRIPGFKDLSQ 444
Query: 151 DDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAE 210
DQV+LLKAG FEVL+VR +FD + + L+G D++ S A L++SMFDF E
Sbjct: 445 HDQVSLLKAGTFEVLVVRFTSLFDVKERKVTFLSGRKYSVDALRSLGAGDLLNSMFDFTE 504
Query: 211 RLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLC 270
+L L+LS+ E+ LF+++V++S RSGL N VE ++ L L ++ +NHP ++ +
Sbjct: 505 KLQALNLSEEEMSLFTAVVLVSADRSGLENVNSVEALQETLIRALRSLITKNHPNEIAIF 564
Query: 271 AELISMLPDLRTLNQLHSEKLVAFQM 296
+L+ LPDLR+LN +HSE+L+AF++
Sbjct: 565 TKLLLKLPDLRSLNNMHSEQLLAFKV 590
Score = 82 (33.9 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 10 KSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTN 46
K +L G +R +A VRFGR+PKREK R+L MQ + N
Sbjct: 160 KCLLVGMSR--DA-VRFGRIPKREKQRMLLEMQNAMN 193
>UNIPROTKB|F1MWI2 [details] [associations]
symbol:NR1D2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00700000104109 OMA:MMNSQFS EMBL:DAAA02061153
EMBL:DAAA02061154 IPI:IPI00694618 Ensembl:ENSBTAT00000023994
Uniprot:F1MWI2
Length = 583
Score = 428 (155.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 87/199 (43%), Positives = 134/199 (67%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
L CP++ P P + E+ ++FS F+P +++VVEFAKRIPGF L DQV LLKAG
Sbjct: 383 LVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 442
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +FD++ ++ L+G+ D +HS A L++SMF+F+E+LN L LSD
Sbjct: 443 TFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDE 502
Query: 221 EIGLFSSIVV---ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISML 277
E+ LF+++V+ +S RSG+ N VE ++ L L ++ +NHP + ++ +L+ L
Sbjct: 503 EMSLFTAVVLSLQLSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKL 562
Query: 278 PDLRTLNQLHSEKLVAFQM 296
PDLR+LN +HSE+L+AF++
Sbjct: 563 PDLRSLNNMHSEELLAFKV 581
Score = 78 (32.5 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 24 VRFGRVPKREKARILAAMQQSTNT 47
VRFGR+PKREK R+L MQ + T
Sbjct: 176 VRFGRIPKREKQRMLIEMQSAMRT 199
Score = 40 (19.1 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 29 VPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIE 84
+P +E+ R ++ S ++K + + +++ E+ ++ V RAH DT + + E
Sbjct: 223 LPAQEQPRPKPQLE-SDSSKSSSPS-SSDFAKEE-VIGMVTRAHKDTFMYNQEPRE 275
>UNIPROTKB|E2R4U0 [details] [associations]
symbol:NR1D1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0034144 "negative
regulation of toll-like receptor 4 signaling pathway" evidence=IEA]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0046872 GO:GO:0007623 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0044212 GO:GO:0000790 GeneTree:ENSGT00700000104109
GO:GO:0034144 CTD:9572 KO:K03728 OMA:SCHQPNS GO:GO:0010871
EMBL:AAEX03006466 RefSeq:XP_003435298.1 ProteinModelPortal:E2R4U0
Ensembl:ENSCAFT00000025626 GeneID:100688236 KEGG:cfa:100688236
Uniprot:E2R4U0
Length = 612
Score = 420 (152.9 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 85/196 (43%), Positives = 131/196 (66%)
Query: 103 LACPLNPNSHPLQGQ--QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACP+N H G+ QE+ +DFS F+P +R+VVEFAK IPGF L DQVTLLKAG
Sbjct: 414 LACPMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAG 473
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
FEVL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++
Sbjct: 474 TFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEE 533
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDL
Sbjct: 534 ELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDL 593
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN +HSEKL++F++
Sbjct: 594 RTLNNMHSEKLLSFRV 609
Score = 84 (34.6 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 24 VRFGRVPKREKARILAAMQQSTN 46
VRFGR+PKREK R+LA MQ + N
Sbjct: 201 VRFGRIPKREKQRMLAEMQSAMN 223
Score = 46 (21.3 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 28/114 (24%), Positives = 40/114 (35%)
Query: 13 LKGNARYHNAPVRFGRVPKREKARI-LAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRA 71
L+ + H AP G P A L Q ++ + E E ++S V RA
Sbjct: 235 LETSPTQHPAPGPMGPSPPPAPAPSPLVGFSQFPQQLTPPRSPSPEPTVED-VISQVARA 293
Query: 72 HLDTCAFTADKI--EP---MLRRAREHPTYTA--CPSTLACPLNPNSHPLQGQQ 118
H + + DK+ P A P T C CP PN + + Q
Sbjct: 294 HREIFTYAHDKLGTSPGNFNANHASGSPPATTPHCWEGQGCPPVPNDNNVMAAQ 347
>ZFIN|ZDB-GENE-080403-5 [details] [associations]
symbol:nr1d4a "nuclear receptor subfamily 1, group D,
member 4a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-080403-5 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 HOGENOM:HOG000261691
HOVERGEN:HBG106790 EMBL:BX465853 IPI:IPI00512239 RefSeq:XP_691607.3
UniGene:Dr.103114 Ensembl:ENSDART00000103169 GeneID:563150
KEGG:dre:563150 CTD:563150 OrthoDB:EOG41NTM7 NextBio:20884758
Uniprot:B8A510
Length = 570
Score = 413 (150.4 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 84/196 (42%), Positives = 128/196 (65%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACPLN P S P Q++ + FS+ F+P +R+VVEFAK IPGF LC DQV LLKAG
Sbjct: 373 LACPLNACPVSAPGVSSQQVWESFSQCFTPAVREVVEFAKGIPGFQELCQHDQVMLLKAG 432
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
F+VL+VR +F+ + S+ LNG+ ++ L+D+MF+F+ +L+ L L
Sbjct: 433 TFQVLMVRFCSLFNHKERSVTFLNGQTYPLGTLRGLGMGSLLDAMFEFSSKLSSLGLESD 492
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF ++V++S SG+ + VE+++ L L ++N+ HP+ +L ++L+ LPDL
Sbjct: 493 EMALFMAVVLVSADCSGISDMLAVEQLQEGLIRALRTLINRRHPDDNSLFSKLLLRLPDL 552
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN LHS+KL+AF++
Sbjct: 553 RTLNNLHSDKLLAFRI 568
Score = 79 (32.9 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALAAE 57
VRFGR+PKREK R+L MQ N+ E ++ E
Sbjct: 185 VRFGRIPKREKQRLLDEMQSYMNS-LNESSMGME 217
>ZFIN|ZDB-GENE-040504-1 [details] [associations]
symbol:nr1d2a "nuclear receptor subfamily 1, group D,
member 2a" species:7955 "Danio rerio" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-040504-1 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00700000104109 EMBL:CU855686 IPI:IPI01024251
Ensembl:ENSDART00000099040 ArrayExpress:F1QIC9 Bgee:F1QIC9
Uniprot:F1QIC9
Length = 504
Score = 380 (138.8 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 82/201 (40%), Positives = 127/201 (63%)
Query: 96 YTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVT 155
+ CP + A P S P G E+ ++FS F P +R+VVEFAKRIPGF L DQV
Sbjct: 306 HLVCPMS-ASPFVDASRP--GH-EVWEEFSRSFIPAVREVVEFAKRIPGFQELSQHDQVN 361
Query: 156 LLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGL 215
LLKAG FEVL+VR +FD Q ++ ++G D + S A L++ MF+F+E+L L
Sbjct: 362 LLKAGTFEVLMVRFVPLFDVQQRTVSFMSGRRYSVDLLRSMGAGELLNCMFEFSEKLAAL 421
Query: 216 HLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELIS 275
L+D E+ LFS++V++S RS + + VE ++ L L +++ +NH + ++ +L+
Sbjct: 422 QLNDEEMSLFSAVVLVSADRSAIEDVVGVEALQESLIRALRNLIMKNHSNESSVFTKLLL 481
Query: 276 MLPDLRTLNQLHSEKLVAFQM 296
LP+LR+LN +HSE+L+AF++
Sbjct: 482 KLPELRSLNNMHSEELLAFKI 502
Score = 79 (32.9 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKAL 54
VRFGR+PKREK R+L MQ + N L
Sbjct: 157 VRFGRIPKREKQRMLLEMQTAMNNMMNNSQL 187
>ZFIN|ZDB-GENE-080403-6 [details] [associations]
symbol:nr1d4b "nuclear receptor subfamily 1, group D,
member 4b" species:7955 "Danio rerio" [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003708 "retinoic acid
receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-080403-6 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00700000104109 EMBL:CT573157 IPI:IPI00488154
RefSeq:XP_700687.4 UniGene:Dr.89121 Ensembl:ENSDART00000082475
GeneID:571948 KEGG:dre:571948 CTD:571948 NextBio:20890772
Bgee:F1QRU1 Uniprot:F1QRU1
Length = 576
Score = 388 (141.6 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 80/196 (40%), Positives = 122/196 (62%)
Query: 103 LACPLN--PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAG 160
LACPLN P S Q++ + FS+ F+P +++VVEFAK IPGF L DQV LLKAG
Sbjct: 379 LACPLNACPVSSASHSSQQVWESFSQCFTPAVKEVVEFAKSIPGFQALSQHDQVMLLKAG 438
Query: 161 VFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDT 220
F+VL+VR +F+++ ++ LNG+ + L+D+MF+F+E+L + L
Sbjct: 439 TFQVLMVRFCSLFNAKERTVTFLNGQTYPLSYLRVLGMGNLLDAMFEFSEKLGSMGLEAD 498
Query: 221 EIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDL 280
E+ LF ++V++S RSG+ + VE+++ L L ++ + PE +L +L+ LPDL
Sbjct: 499 EMALFMAVVLVSADRSGISDMGAVEQLQEDLIGALRALITRRRPEDSSLFPKLLLRLPDL 558
Query: 281 RTLNQLHSEKLVAFQM 296
RTLN HSEKL+AF +
Sbjct: 559 RTLNNQHSEKLLAFHI 574
Score = 77 (32.2 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 24 VRFGRVPKREKARILAAMQQSTNT 47
VRFGR+PKREK R+L MQ N+
Sbjct: 190 VRFGRIPKREKQRLLDEMQSYMNS 213
>ZFIN|ZDB-GENE-060306-2 [details] [associations]
symbol:roraa "RAR-related orphan receptor A, paralog
a" species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-060306-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
EMBL:CABZ01027882 EMBL:CABZ01027883 EMBL:CABZ01027884
EMBL:CABZ01027885 EMBL:CU468885 IPI:IPI00995582
ProteinModelPortal:F1QLY4 Ensembl:ENSDART00000121449 Bgee:F1QLY4
Uniprot:F1QLY4
Length = 516
Score = 323 (118.8 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
Identities = 81/245 (33%), Positives = 132/245 (53%)
Query: 51 EKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPN 110
E + + + + + + ++H++TC + ++++ M +A N
Sbjct: 256 ETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVE----------NYQ 305
Query: 111 SHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
S P + +L + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ VR+
Sbjct: 306 SKPREVMWQLC---AIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMC 362
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVV 230
FD Q N+ + +G+ D S L+ S+F+F + L +HLS+ EI LFS+ V+
Sbjct: 363 RAFDPQNNT-VYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFSAFVL 421
Query: 231 ISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEK 290
+S RS L+ K VE+++ K++ L HVL +NH E + +LI + LR L H+EK
Sbjct: 422 MSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCSRHTEK 480
Query: 291 LVAFQ 295
L AF+
Sbjct: 481 LTAFK 485
Score = 42 (19.8 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 136 VKFGRMSKKQRDSLYAEVQK 155
>UNIPROTKB|F1P5Z9 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 GeneTree:ENSGT00700000104109 EMBL:AAEX03016182
Ensembl:ENSCAFT00000026448 Uniprot:F1P5Z9
Length = 458
Score = 312 (114.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 79/251 (31%), Positives = 137/251 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T +
Sbjct: 195 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-------TFLQEEI- 243
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
S+ + ++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV
Sbjct: 244 -----ESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEV 298
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI L
Sbjct: 299 VFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIAL 357
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
FS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L
Sbjct: 358 FSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALC 416
Query: 285 QLHSEKLVAFQ 295
H+EKL+AF+
Sbjct: 417 GRHTEKLMAFK 427
Score = 42 (19.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 78 VKFGRMSKKQRDSLYAEVQK 97
>UNIPROTKB|F1MWS0 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0042462 "eye photoreceptor cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GO:GO:0042462
GeneTree:ENSGT00700000104109 CTD:6096 KO:K08533 OMA:SGHTMRA
EMBL:DAAA02022913 EMBL:DAAA02022911 EMBL:DAAA02022912
IPI:IPI00709815 RefSeq:NP_001179587.1 UniGene:Bt.51697
Ensembl:ENSBTAT00000028921 GeneID:528382 KEGG:bta:528382
NextBio:20874809 Uniprot:F1MWS0
Length = 459
Score = 312 (114.9 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 76/240 (31%), Positives = 133/240 (55%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+ + R+ ++++HL+TC +T +++ + A + TY ++ + +
Sbjct: 209 MSEIDRIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSR 255
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 256 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 315
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 316 NTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW 374
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 375 LIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 433
Score = 42 (19.8 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 80 VKFGRMSKKQRDSLYAEVQK 99
>RGD|1306778 [details] [associations]
symbol:Rorb "RAR-related orphan receptor B" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;ISS;IDA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007420 "brain development" evidence=IEP]
[GO:0007601 "visual perception" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008502 "melatonin receptor activity"
evidence=IDA] [GO:0009725 "response to hormone stimulus"
evidence=IEP] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA;ISO;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO;ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:1306778 GO:GO:0005634 GO:GO:0045893 GO:GO:0007420
GO:GO:0046872 GO:GO:0007623 GO:GO:0007601 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0009725
GO:GO:0030522 GO:GO:0042462 eggNOG:NOG324222 GO:GO:0008502 PDB:1K4W
PDB:1N4H PDB:1NQ7 PDBsum:1K4W PDBsum:1N4H PDBsum:1NQ7
HOGENOM:HOG000010200 HOVERGEN:HBG106848 OrthoDB:EOG4KH2TT
EMBL:L14610 IPI:IPI00208302 IPI:IPI00829487 PIR:I65219
UniGene:Rn.231652 ProteinModelPortal:P45446 SMR:P45446
STRING:P45446 PhosphoSite:P45446 UCSC:RGD:1306778 InParanoid:P45446
EvolutionaryTrace:P45446 ArrayExpress:P45446 Genevestigator:P45446
GermOnline:ENSRNOG00000013413 Uniprot:P45446
Length = 470
Score = 313 (115.2 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 76/240 (31%), Positives = 133/240 (55%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+ + R+ ++++HL+TC +T +++ + A + TY ++ + +
Sbjct: 220 MSEIDRIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSR 266
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 267 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 326
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 327 NTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 386 LLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
Score = 42 (19.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 91 VKFGRMSKKQRDSLYAEVQK 110
>UNIPROTKB|P45446 [details] [associations]
symbol:Rorb "Nuclear receptor ROR-beta" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:1306778 GO:GO:0005634 GO:GO:0045893 GO:GO:0007420
GO:GO:0046872 GO:GO:0007623 GO:GO:0007601 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0009725
GO:GO:0030522 GO:GO:0042462 eggNOG:NOG324222 GO:GO:0008502 PDB:1K4W
PDB:1N4H PDB:1NQ7 PDBsum:1K4W PDBsum:1N4H PDBsum:1NQ7
HOGENOM:HOG000010200 HOVERGEN:HBG106848 OrthoDB:EOG4KH2TT
EMBL:L14610 IPI:IPI00208302 IPI:IPI00829487 PIR:I65219
UniGene:Rn.231652 ProteinModelPortal:P45446 SMR:P45446
STRING:P45446 PhosphoSite:P45446 UCSC:RGD:1306778 InParanoid:P45446
EvolutionaryTrace:P45446 ArrayExpress:P45446 Genevestigator:P45446
GermOnline:ENSRNOG00000013413 Uniprot:P45446
Length = 470
Score = 313 (115.2 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 76/240 (31%), Positives = 133/240 (55%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+ + R+ ++++HL+TC +T +++ + A + TY ++ + +
Sbjct: 220 MSEIDRIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSR 266
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 267 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 326
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 327 NTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 386 LLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
Score = 42 (19.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 91 VKFGRMSKKQRDSLYAEVQK 110
>UNIPROTKB|F1LZZ3 [details] [associations]
symbol:Rora "Protein Rora" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:1308419 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0030522 GO:GO:0006809 GO:GO:0021702 GO:GO:0046068
GO:GO:0043030 GeneTree:ENSGT00700000104109 IPI:IPI00373337
Ensembl:ENSRNOT00000013142 ArrayExpress:F1LZZ3 Uniprot:F1LZZ3
Length = 457
Score = 311 (114.5 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 82/253 (32%), Positives = 138/253 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T+
Sbjct: 194 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-----TF-------- 237
Query: 105 CPLNPNSHPLQGQQ-ELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 238 --LQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 295
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 296 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 354
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 355 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 413
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 414 LCGRHTEKLMAFK 426
Score = 42 (19.8 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 77 VKFGRMSKKQRDSLYAEVQK 96
>MGI|MGI:1343464 [details] [associations]
symbol:Rorb "RAR-related orphan receptor beta" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007601
"visual perception" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008502 "melatonin receptor activity"
evidence=ISO] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IEA] [GO:0042462 "eye photoreceptor
cell development" evidence=IMP] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0050896 "response
to stimulus" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:1343464 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0046872 GO:GO:0007623
GO:GO:0007601 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0030522 GO:GO:0042462 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 GO:GO:0008502 HOGENOM:HOG000010200
HOVERGEN:HBG106848 CTD:6096 KO:K08533 OMA:SGHTMRA OrthoDB:EOG4KH2TT
EMBL:BC024842 EMBL:BC058269 EMBL:DQ779923 EMBL:DQ779924
EMBL:AB258405 IPI:IPI00153341 IPI:IPI00788322 RefSeq:NP_001036819.1
RefSeq:NP_666207.3 UniGene:Mm.276747 ProteinModelPortal:Q8R1B8
SMR:Q8R1B8 STRING:Q8R1B8 PhosphoSite:Q8R1B8 PRIDE:Q8R1B8
Ensembl:ENSMUST00000040153 Ensembl:ENSMUST00000112828
Ensembl:ENSMUST00000112832 GeneID:225998 KEGG:mmu:225998
UCSC:uc008gyc.1 UCSC:uc008gyd.1 NextBio:377911 Bgee:Q8R1B8
CleanEx:MM_RORB Genevestigator:Q8R1B8 GermOnline:ENSMUSG00000036192
Uniprot:Q8R1B8
Length = 470
Score = 312 (114.9 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 76/240 (31%), Positives = 133/240 (55%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+ + R+ ++++HL+TC +T +++ + A + TY ++ + +
Sbjct: 220 MSEIDRIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSR 266
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 267 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 326
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 327 NTVL-FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 386 LIEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
Score = 42 (19.8 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 91 VKFGRMSKKQRDSLYAEVQK 110
>RGD|1308419 [details] [associations]
symbol:Rora "RAR-related orphan receptor A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0006809 "nitric oxide biosynthetic process"
evidence=ISO] [GO:0007623 "circadian rhythm" evidence=IEP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISO]
[GO:0043030 "regulation of macrophage activation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046068 "cGMP metabolic
process" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:1308419 GO:GO:0005634 GO:GO:0046872
GO:GO:0007623 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0030522 GO:GO:0006809 GO:GO:0021702
GO:GO:0046068 GO:GO:0043030 IPI:IPI00780466
Ensembl:ENSRNOT00000057506 UCSC:RGD:1308419 ArrayExpress:F1M505
Uniprot:F1M505
Length = 466
Score = 311 (114.5 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 82/253 (32%), Positives = 138/253 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T+
Sbjct: 203 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-----TF-------- 246
Query: 105 CPLNPNSHPLQGQQ-ELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 247 --LQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 304
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 305 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 363
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 364 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 422
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 423 LCGRHTEKLMAFK 435
Score = 42 (19.8 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 86 VKFGRMSKKQRDSLYAEVQK 105
>ZFIN|ZDB-GENE-040426-855 [details] [associations]
symbol:rorab "RAR-related orphan receptor A,
paralog b" species:7955 "Danio rerio" [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-040426-855 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG324222 GeneTree:ENSGT00700000104109
HOGENOM:HOG000010200 HOVERGEN:HBG106848 EMBL:BX927082 EMBL:BC159203
IPI:IPI00619432 UniGene:Dr.107956 SMR:B0JZJ5
Ensembl:ENSDART00000099477 Uniprot:B0JZJ5
Length = 492
Score = 312 (114.9 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 75/237 (31%), Positives = 136/237 (57%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ 118
DD + + + ++HL+TC + ++++P + T S L ++ + Q+
Sbjct: 222 DDLEHLSENICKSHLETCQYLREELQPSNWQ-------TVLQSNL------EAYQKKSQE 268
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
++ Q + + + ++ VVEFAKRI GF LC +DQ+ LLKAG EV+ VR+ ++SQ N
Sbjct: 269 DMWQLCAVKVTEAVQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAYNSQNN 328
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
++ + + + + L+ S+F+FA+ LN L LS+ EIGLFS+ V++S RS L
Sbjct: 329 TVF-FDSKYAGPEVFKALGCDDLISSVFEFAKSLNSLQLSEDEIGLFSAYVLMSADRSWL 387
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ K VE+++ K++ L ++L +N ++ + +L+ + +R L + H EKL AF+
Sbjct: 388 QEKTRVEKLQQKIKIALQNLLQKNKRDE-GILTKLVCKVSTVRMLCRRHMEKLSAFR 443
Score = 44 (20.5 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEK 52
V+FGR+ K+++ + A +Q+ + +K
Sbjct: 87 VKFGRMSKKQRDSLFAEVQKHRQQQQDDK 115
>UNIPROTKB|F1PET8 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0042462 "eye
photoreceptor cell development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GO:GO:0042462 GeneTree:ENSGT00700000104109 OMA:SGHTMRA
EMBL:AAEX03000553 EMBL:AAEX03000554 Ensembl:ENSCAFT00000036494
Uniprot:F1PET8
Length = 470
Score = 311 (114.5 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 76/235 (32%), Positives = 131/235 (55%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY ++ + ++ L Q
Sbjct: 225 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSREALWQ 271
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 272 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 330
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 331 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 390
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 391 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
Score = 42 (19.8 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 91 VKFGRMSKKQRDSLYAEVQK 110
>UNIPROTKB|Q92753 [details] [associations]
symbol:RORB "Nuclear receptor ROR-beta" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007601 "visual perception" evidence=IEA] [GO:0042462 "eye
photoreceptor cell development" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=TAS] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0045893 GO:GO:0005654 GO:GO:0007420
GO:GO:0046872 GO:GO:0007623 GO:GO:0007601 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006367 GO:GO:0042462
eggNOG:NOG324222 GO:GO:0008502 HOGENOM:HOG000010200
HOVERGEN:HBG106848 EMBL:Y08639 EMBL:BX647070 EMBL:AL137018
IPI:IPI00023259 IPI:IPI00827604 RefSeq:NP_008845.2
UniGene:Hs.494178 ProteinModelPortal:Q92753 SMR:Q92753
STRING:Q92753 PhosphoSite:Q92753 DMDM:124028630 PRIDE:Q92753
DNASU:6096 Ensembl:ENST00000376896 Ensembl:ENST00000396204
GeneID:6096 KEGG:hsa:6096 UCSC:uc004aji.3 CTD:6096
GeneCards:GC09P077112 HGNC:HGNC:10259 HPA:HPA008393 MIM:601972
neXtProt:NX_Q92753 PharmGKB:PA34631 InParanoid:Q92753 KO:K08533
OMA:SGHTMRA OrthoDB:EOG4KH2TT ChiTaRS:RORB GenomeRNAi:6096
NextBio:23713 ArrayExpress:Q92753 Bgee:Q92753 CleanEx:HS_RORB
Genevestigator:Q92753 GermOnline:ENSG00000198963 Uniprot:Q92753
Length = 470
Score = 311 (114.5 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 76/235 (32%), Positives = 131/235 (55%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY ++ + ++ L Q
Sbjct: 225 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSREALWQ 271
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 272 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 330
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 331 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 390
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 391 KVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 444
Score = 42 (19.8 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 91 VKFGRMSKKQRDSLYAEVQK 110
>UNIPROTKB|F1P607 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 GeneTree:ENSGT00700000104109 OMA:VAAQIEI
EMBL:AAEX03016182 Ensembl:ENSCAFT00000026445 Uniprot:F1P607
Length = 487
Score = 312 (114.9 bits), Expect = 6.1e-26, Sum P(2) = 6.1e-26
Identities = 79/251 (31%), Positives = 137/251 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T +
Sbjct: 204 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-------TFLQEEI- 252
Query: 105 CPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
S+ + ++ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV
Sbjct: 253 -----ESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEV 307
Query: 165 LLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI L
Sbjct: 308 VFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIAL 366
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
FS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L
Sbjct: 367 FSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALC 425
Query: 285 QLHSEKLVAFQ 295
H+EKL+AF+
Sbjct: 426 GRHTEKLMAFK 436
Score = 42 (19.8 bits), Expect = 6.1e-26, Sum P(2) = 6.1e-26
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 87 VKFGRMSKKQRDSLYAEVQK 106
>ZFIN|ZDB-GENE-061204-2 [details] [associations]
symbol:rorb "RAR-related orphan receptor B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-061204-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
OMA:SGHTMRA EMBL:BX537293 EMBL:CU929335 IPI:IPI00489649
Ensembl:ENSDART00000089748 Bgee:F1R6M2 Uniprot:F1R6M2
Length = 466
Score = 306 (112.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 79/239 (33%), Positives = 132/239 (55%)
Query: 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQG 116
ELD R+ ++++HL+TC +TA++++ + + + S +
Sbjct: 217 ELD---RIAQNIIKSHLETCQYTAEELQQLAWQTHSYEEVKMYQS-------------KT 260
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 261 RDVLWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL 320
Query: 177 TNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
N+++ G+ + L+ ++FDFA+ L L L++ EI LFS+ V+IS R
Sbjct: 321 NNTVL-FEGKYGGMQIFKTLGCDDLVSAVFDFAKSLCSLQLTEEEIALFSAAVLISTDRP 379
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L V++++ K+ L H++ +NH ++ L A+LIS +P L L LH+E+L AFQ
Sbjct: 380 WLMEPRKVQKLQEKIYFALQHIMQKNHLDEDAL-AKLISRIPTLSALCTLHTEELQAFQ 437
Score = 42 (19.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 80 VKFGRMSKKQRDSLYAEVQK 99
>UNIPROTKB|Q98934 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG324222 GeneTree:ENSGT00700000104109
HOGENOM:HOG000010200 HOVERGEN:HBG106848 CTD:6096 KO:K08533
OrthoDB:EOG4KH2TT EMBL:AADN02059739 EMBL:AADN02059740
EMBL:AADN02059741 EMBL:AADN02059742 EMBL:AADN02059743
EMBL:AADN02059744 EMBL:AADN02059745 EMBL:AADN02059746
EMBL:AADN02059747 EMBL:AADN02059748 EMBL:AADN02059749
EMBL:AADN02059750 EMBL:Y08638 IPI:IPI00597298 RefSeq:NP_990424.1
UniGene:Gga.581 HSSP:P45446 SMR:Q98934 STRING:Q98934
Ensembl:ENSGALT00000024445 GeneID:395980 KEGG:gga:395980
NextBio:20816045 Uniprot:Q98934
Length = 459
Score = 305 (112.4 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 76/235 (32%), Positives = 129/235 (54%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY + + ++ L Q
Sbjct: 214 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KVYQSKTREALWQ 260
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 261 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 319
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 320 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 379
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L +LI+ +P + L LH EKL F+ +
Sbjct: 380 KVQKLQEKIYFALQHVIQKNHLDDETL-TKLIAKIPTITALCNLHGEKLQVFKQS 433
Score = 42 (19.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 80 VKFGRMSKKQRDSLYAEVQK 99
>UNIPROTKB|F1N7R0 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046068 "cGMP metabolic process" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043030 "regulation of
macrophage activation" evidence=IEA] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEA] [GO:0006809 "nitric
oxide biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0030522
GO:GO:0006809 GO:GO:0021702 GO:GO:0046068 GO:GO:0043030
GeneTree:ENSGT00700000104109 CTD:6095 KO:K08532 OMA:VAAQIEI
EMBL:DAAA02028787 EMBL:DAAA02028778 EMBL:DAAA02028779
EMBL:DAAA02028780 EMBL:DAAA02028781 EMBL:DAAA02028782
EMBL:DAAA02028783 EMBL:DAAA02028784 EMBL:DAAA02028785
EMBL:DAAA02028786 IPI:IPI00708401 RefSeq:NP_001179790.1
UniGene:Bt.56061 Ensembl:ENSBTAT00000021144 GeneID:535597
KEGG:bta:535597 NextBio:20876785 Uniprot:F1N7R0
Length = 523
Score = 311 (114.5 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 82/253 (32%), Positives = 138/253 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T+
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-----TF-------- 303
Query: 105 CPLNPNSHPLQGQQ-ELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 304 --LQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
Score = 42 (19.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 143 VKFGRMSKKQRDSLYAEVQK 162
>MGI|MGI:104661 [details] [associations]
symbol:Rora "RAR-related orphan receptor alpha" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006809 "nitric
oxide biosynthetic process" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IMP] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=IEA] [GO:0043030 "regulation
of macrophage activation" evidence=IMP] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;ISO;IDA] [GO:0046068 "cGMP metabolic process"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:104661 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0003700 GO:GO:0030522 GO:GO:0006809
GO:GO:0021702 GO:GO:0046068 Reactome:REACT_109335
Reactome:REACT_24972 GO:GO:0043030 eggNOG:NOG324222
GeneTree:ENSGT00700000104109 CTD:6095 HOGENOM:HOG000010200
HOVERGEN:HBG106848 KO:K08532 OMA:VAAQIEI ChiTaRS:RORA EMBL:U53228
EMBL:Y08640 EMBL:Z82994 EMBL:S82720 EMBL:D45910 EMBL:BC003757
IPI:IPI00122512 IPI:IPI00395039 PIR:S68517 RefSeq:NP_038674.1
UniGene:Mm.378450 UniGene:Mm.391890 UniGene:Mm.427266
UniGene:Mm.490614 ProteinModelPortal:P51448 SMR:P51448
DIP:DIP-35351N IntAct:P51448 STRING:P51448 PhosphoSite:P51448
PRIDE:P51448 Ensembl:ENSMUST00000034766 Ensembl:ENSMUST00000113624
GeneID:19883 KEGG:mmu:19883 InParanoid:P51448 OrthoDB:EOG4GHZP3
NextBio:297388 Bgee:P51448 CleanEx:MM_RORA Genevestigator:P51448
GermOnline:ENSMUSG00000032238 Uniprot:P51448
Length = 523
Score = 311 (114.5 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 82/253 (32%), Positives = 138/253 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T+
Sbjct: 260 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-----TF-------- 303
Query: 105 CPLNPNSHPLQGQQ-ELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 304 --LQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 361
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 362 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 420
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 421 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 479
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 480 LCGRHTEKLMAFK 492
Score = 42 (19.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 143 VKFGRMSKKQRDSLYAEVQK 162
>UNIPROTKB|F1S075 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046068 "cGMP metabolic process" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043030 "regulation of
macrophage activation" evidence=IEA] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEA] [GO:0006809 "nitric
oxide biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0030522
GO:GO:0006809 GO:GO:0021702 GO:GO:0046068 GO:GO:0043030
GeneTree:ENSGT00700000104109 OMA:VAAQIEI EMBL:CU571371
EMBL:CU618323 Ensembl:ENSSSCT00000005055 Uniprot:F1S075
Length = 506
Score = 309 (113.8 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 70/180 (38%), Positives = 110/180 (61%)
Query: 117 QQELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
Q+E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDS
Sbjct: 298 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 357
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
Q N+ + +G+ D S + +F+F + L +HL++ EI LFS+ V++S R
Sbjct: 358 QNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADR 416
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
S L+ K +E+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 417 SWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFK 475
Score = 42 (19.8 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 80 VKFGRMSKKQRDSLYAEVQK 99
>ZFIN|ZDB-GENE-040724-215 [details] [associations]
symbol:rorcb "RAR-related orphan receptor C b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-040724-215 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
HOGENOM:HOG000010200 HOVERGEN:HBG106848 EMBL:DQ017628
IPI:IPI00498218 UniGene:Dr.12904 InParanoid:Q1L678 Uniprot:Q1L678
Length = 480
Score = 304 (112.1 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 74/239 (30%), Positives = 137/239 (57%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
L D +R+ VV++HL+TC ++ +++ ++H T++ L P S L+
Sbjct: 228 LHDIERITQNVVKSHLETCQYSTEEL-------KKH-TWS-----LYTPEETRSFQLKSA 274
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ + Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EVLL+R+ ++S
Sbjct: 275 EWMWQQCALQITNAIQYVVEFAKRISGFMELCQNDQIILLKAGCLEVLLIRMCRAYNSSN 334
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N+M +G+ + L++++F+ A+ L+ L LS+ E+ L+S+ V+++P R
Sbjct: 335 NTMF-FDGKFASPQLFKALGCDDLVNAVFELAKSLSRLQLSEEEMALYSAAVLLAPDRPW 393
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L + V++++ K+ L H L+ N L +++S LP ++++ LH++KL F++
Sbjct: 394 LTESQQVQKLQEKVYVALQHSLHMNGATIEKL-DKMVSKLPQMKSICNLHTDKLEFFRL 451
Score = 45 (20.9 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
VRFGR+ K+++ + A +Q+
Sbjct: 80 VRFGRMSKKQRDSLYAEVQR 99
>UNIPROTKB|E1C5M3 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042462 "eye photoreceptor
cell development" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
OMA:SGHTMRA EMBL:AADN02059739 EMBL:AADN02059740 EMBL:AADN02059741
EMBL:AADN02059742 EMBL:AADN02059743 EMBL:AADN02059744
EMBL:AADN02059745 EMBL:AADN02059746 EMBL:AADN02059747
EMBL:AADN02059748 EMBL:AADN02059749 EMBL:AADN02059750
IPI:IPI00594386 Ensembl:ENSGALT00000024446 ArrayExpress:E1C5M3
Uniprot:E1C5M3
Length = 470
Score = 305 (112.4 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
Identities = 76/235 (32%), Positives = 129/235 (54%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY + + ++ L Q
Sbjct: 222 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KVYQSKTREALWQ 268
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 269 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 327
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+ L
Sbjct: 328 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPR 387
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
V++++ K+ L HV+ +NH + L +LI+ +P + L LH EKL F+ +
Sbjct: 388 KVQKLQEKIYFALQHVIQKNHLDDETL-TKLIAKIPTITALCNLHGEKLQVFKQS 441
Score = 42 (19.8 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 88 VKFGRMSKKQRDSLYAEVQK 107
>UNIPROTKB|P35398 [details] [associations]
symbol:RORA "Nuclear receptor ROR-alpha" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0006809 "nitric oxide biosynthetic process" evidence=IEA]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=IEA] [GO:0043030 "regulation of macrophage activation"
evidence=IEA] [GO:0046068 "cGMP metabolic process" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007165 "signal
transduction" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005654
GO:GO:0046872 Pathway_Interaction_DB:hif1_tfpathway GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0006809
EMBL:CH471082 GO:GO:0006367 EMBL:AC087385 GO:GO:0021702
GO:GO:0046068 Reactome:REACT_24941 GO:GO:0043030 eggNOG:NOG324222
EMBL:U04897 EMBL:U04898 EMBL:U04899 EMBL:L14611 EMBL:HQ692818
EMBL:AC009560 EMBL:AC012404 EMBL:AC022898 EMBL:AC079068
EMBL:AC107241 EMBL:AC107905 EMBL:BC008831 EMBL:BC100987
EMBL:BC100988 EMBL:BC100989 EMBL:BC100990 IPI:IPI00018225
IPI:IPI00107635 IPI:IPI00218544 IPI:IPI00243584 PIR:A53196
PIR:A56856 PIR:B53196 PIR:C53196 RefSeq:NP_002934.1
RefSeq:NP_599022.1 RefSeq:NP_599023.1 RefSeq:NP_599024.1
UniGene:Hs.560343 UniGene:Hs.655155 PDB:1N83 PDB:1S0X PDBsum:1N83
PDBsum:1S0X ProteinModelPortal:P35398 SMR:P35398 DIP:DIP-29938N
IntAct:P35398 MINT:MINT-2855668 STRING:P35398 PhosphoSite:P35398
DMDM:548814 PRIDE:P35398 Ensembl:ENST00000261523
Ensembl:ENST00000309157 Ensembl:ENST00000335670
Ensembl:ENST00000449337 GeneID:6095 KEGG:hsa:6095 UCSC:uc002agt.4
UCSC:uc002agv.3 UCSC:uc002agw.3 UCSC:uc002agx.3 CTD:6095
GeneCards:GC15M060780 HGNC:HGNC:10258 HPA:CAB009861 MIM:600825
neXtProt:NX_P35398 PharmGKB:PA34630 HOGENOM:HOG000010200
HOVERGEN:HBG106848 InParanoid:P35398 KO:K08532 OMA:VAAQIEI
PhylomeDB:P35398 BindingDB:P35398 ChEMBL:CHEMBL5868 ChiTaRS:RORA
EvolutionaryTrace:P35398 GenomeRNAi:6095 NextBio:23703
ArrayExpress:P35398 Bgee:P35398 CleanEx:HS_RORA
Genevestigator:P35398 GermOnline:ENSG00000069667 Uniprot:P35398
Length = 556
Score = 311 (114.5 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 82/253 (32%), Positives = 138/253 (54%)
Query: 45 TNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA 104
TN + + AEL+ + + ++HL+TC + ++++ + + T+
Sbjct: 293 TNGETSPTVSMAELE---HLAQNISKSHLETCQYLREELQQITWQ-----TF-------- 336
Query: 105 CPLNPNSHPLQGQQ-ELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
L Q +Q E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG
Sbjct: 337 --LQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSL 394
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
EV+ +R+ FDSQ N+ + +G+ D S + +F+F + L +HL++ EI
Sbjct: 395 EVVFIRMCRAFDSQNNT-VYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI 453
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
LFS+ V++S RS L+ K +E+++ K++ L HVL +NH E + +LI + LR
Sbjct: 454 ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRA 512
Query: 283 LNQLHSEKLVAFQ 295
L H+EKL+AF+
Sbjct: 513 LCGRHTEKLMAFK 525
Score = 42 (19.8 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 176 VKFGRMSKKQRDSLYAEVQK 195
>UNIPROTKB|F1NML9 [details] [associations]
symbol:RORA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006809 "nitric oxide
biosynthetic process" evidence=IEA] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEA] [GO:0043030
"regulation of macrophage activation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0046068 "cGMP metabolic process"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0030522 GO:GO:0006809 GO:GO:0046068 GO:GO:0043030
GeneTree:ENSGT00700000104109 OMA:VAAQIEI EMBL:AADN02040416
IPI:IPI00581652 Ensembl:ENSGALT00000005967 Uniprot:F1NML9
Length = 469
Score = 302 (111.4 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 69/181 (38%), Positives = 111/181 (61%)
Query: 117 QQELL-QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
Q+E++ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDS
Sbjct: 260 QREVMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDS 319
Query: 176 QTNSMICLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
Q N+ + +G+ + S + + +F+F + L +HL++ EI LFS+ V++S
Sbjct: 320 QNNT-VYFDGKYASPEVFKSLAGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSAD 378
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAF 294
RS L+ K +E+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF
Sbjct: 379 RSWLQEKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLIAF 437
Query: 295 Q 295
+
Sbjct: 438 K 438
Score = 42 (19.8 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 88 VKFGRMSKKQRDSLYAEVQK 107
>ZFIN|ZDB-GENE-110411-42 [details] [associations]
symbol:si:dkey-80m2.2 "si:dkey-80m2.2" species:7955
"Danio rerio" [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-110411-42
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104109
EMBL:CR388088 EMBL:CR628385 EMBL:CR749162 IPI:IPI00995584
ProteinModelPortal:E7FBX0 Ensembl:ENSDART00000128798 Uniprot:E7FBX0
Length = 480
Score = 294 (108.6 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 65/177 (36%), Positives = 113/177 (63%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E+ Q + R S ++ VVEFAKRIPGF LC +DQ+ LLK+G EV+LVR+ MF++ N
Sbjct: 276 EMWQYCAVRLSDAVQYVVEFAKRIPGFRQLCQNDQIALLKSGSMEVVLVRMTRMFNTANN 335
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
++ +G+ + S L+ ++F+FA L L L++ ++ +F+++++I+P R L
Sbjct: 336 TVF-FDGKYAGTELFKSLACSDLIAAVFEFANNLCALRLNEQQMAVFTAMILINPDRPCL 394
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
++E V+R+R ++E L H+L++++ E +L +L +P LR++ LH EKL F+
Sbjct: 395 EDRERVQRVRTEVELALRHILHRDNQE--SLLQKLYQRVPVLRSMCALHIEKLQWFR 449
Score = 48 (22.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 24/97 (24%), Positives = 44/97 (45%)
Query: 10 KSILKGNARYHNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVV 69
K + +G +R +A V+FGR+ KR++ + A +++ + L A E + L
Sbjct: 70 KCVAQGMSR--DA-VKFGRMSKRQRDSLFAEVERHRQ----HQRLQANSVQEPQPLQAY- 121
Query: 70 RAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACP 106
R+ DT + I P+ +P ++ P CP
Sbjct: 122 RSSKDTREQPSHLIPPL---PAAYP-FSVEPELAGCP 154
>UNIPROTKB|Q8HYL6 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:38626 "Phascolarctos cinereus" [GO:0008144 "drug
binding" evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS]
[GO:0032099 "negative regulation of appetite" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0045893 GO:GO:0046872 GO:GO:0008144
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0008289
GO:GO:0030522 GO:GO:0032099 HOVERGEN:HBG106004 EMBL:AF463455
ProteinModelPortal:Q8HYL6 SMR:Q8HYL6 Uniprot:Q8HYL6
Length = 468
Score = 301 (111.0 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 89/295 (30%), Positives = 150/295 (50%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E+ D + + + A+L F
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSEVADLKSLAKRIYEAYLKN--FN 219
Query: 80 ADKIEPML---RRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--E 126
+KI+ + +A +P + T C + TL L N +Q ++ ++ F +
Sbjct: 220 MNKIKARIILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 277
Query: 127 RFS-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
S T+ ++ EFAK IPGFS L +DQVTLLK GV+E + L+ + + ++
Sbjct: 278 CTSVETVTELTEFAKSIPGFSNLNLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGN 336
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 337 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 396
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ERM+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 397 IERMQESIVHVLQLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTE 451
>UNIPROTKB|F1SM76 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0046321 GO:GO:0010887 GO:GO:0000122 GO:GO:0010891
GO:GO:0042060 GO:GO:0008544 GO:GO:0070166 GO:GO:0032099
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 OMA:ICPLSPL GO:GO:0072366 EMBL:FP016092
Ensembl:ENSSSCT00000000007 Uniprot:F1SM76
Length = 468
Score = 295 (108.9 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 88/293 (30%), Positives = 146/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C AE D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDAETADLKSLAKRIYEAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L +A +P + T C + TL L N +Q ++ ++ F +
Sbjct: 222 KVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 279
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++
Sbjct: 280 SVETVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ FDFA + N L L D+++ LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDLSLFVAAIICCGDRPGLLNVGHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
RM+ + ++L L NHP+ + L +L+ L DLR L H++ + + TE
Sbjct: 399 RMQEGIVHVLKLHLQTNHPDDVFLFPKLLQKLADLRQLVTEHAQLVQVIKKTE 451
>UNIPROTKB|Q95N78 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:9615 "Canis lupus familiaris" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=ISS] [GO:0008544 "epidermis development" evidence=ISS]
[GO:0006631 "fatty acid metabolic process" evidence=ISS]
[GO:0004872 "receptor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS]
[GO:0008144 "drug binding" evidence=ISS] [GO:0032099 "negative
regulation of appetite" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0072366 "regulation of cellular ketone
metabolic process by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0072363 "regulation of
glycolysis by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070166 "enamel
mineralization" evidence=IEA] [GO:0046321 "positive regulation of
fatty acid oxidation" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0031624 "ubiquitin conjugating enzyme binding"
evidence=IEA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010871 "negative regulation
of receptor biosynthetic process" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0001103 "RNA
polymerase II repressing transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0004872 GO:GO:0006631 GO:GO:0003700
GO:GO:0019217 GO:GO:0046321 GO:GO:0010887 GO:GO:0000122
GO:GO:0010891 GO:GO:0008289 GO:GO:0042060 GO:GO:0008544
GO:GO:0070166 GO:GO:0032099 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 EMBL:AF350327 RefSeq:NP_001003093.1 UniGene:Cfa.3519
ProteinModelPortal:Q95N78 SMR:Q95N78 STRING:Q95N78
Ensembl:ENSCAFT00000001222 GeneID:403654 KEGG:cfa:403654 CTD:5465
HOGENOM:HOG000261626 HOVERGEN:HBG106004 InParanoid:Q95N78 KO:K07294
OMA:ICPLSPL OrthoDB:EOG4FFD1Q BindingDB:Q95N78 ChEMBL:CHEMBL2847
NextBio:20817159 GO:GO:0072366 Uniprot:Q95N78
Length = 468
Score = 293 (108.2 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 87/293 (29%), Positives = 147/293 (50%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEQDPEDAETADLKSLAKRIYEAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L +A +P + T C + TL L N +Q ++ ++ F +
Sbjct: 222 KVKARVILAGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 279
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++
Sbjct: 280 SVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 399 KMQEGIVHVLKLHLQTNHPDNIFLFPKLLQKMADLRQLVTEHAQLVQVIKKTE 451
>UNIPROTKB|Q9I878 [details] [associations]
symbol:PPAR gamma "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001012 "RNA polymerase
II regulatory region DNA binding" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0008144 "drug binding" evidence=IEA] [GO:0008217 "regulation of
blood pressure" evidence=IEA] [GO:0010871 "negative regulation of
receptor biosynthetic process" evidence=IEA] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA] [GO:0010891
"negative regulation of sequestering of triglyceride" evidence=IEA]
[GO:0015909 "long-chain fatty acid transport" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0030224 "monocyte
differentiation" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0030855 "epithelial cell differentiation" evidence=IEA]
[GO:0032526 "response to retinoic acid" evidence=IEA] [GO:0032869
"cellular response to insulin stimulus" evidence=IEA] [GO:0033613
"activating transcription factor binding" evidence=IEA] [GO:0035357
"peroxisome proliferator activated receptor signaling pathway"
evidence=IEA] [GO:0042593 "glucose homeostasis" evidence=IEA]
[GO:0042953 "lipoprotein transport" evidence=IEA] [GO:0045165 "cell
fate commitment" evidence=IEA] [GO:0045600 "positive regulation of
fat cell differentiation" evidence=IEA] [GO:0045713 "low-density
lipoprotein particle receptor biosynthetic process" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046965 "retinoid X
receptor binding" evidence=IEA] [GO:0048469 "cell maturation"
evidence=IEA] [GO:0048662 "negative regulation of smooth muscle
cell proliferation" evidence=IEA] [GO:0050872 "white fat cell
differentiation" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0055098 "response to low-density lipoprotein
particle stimulus" evidence=IEA] [GO:0060336 "negative regulation
of interferon-gamma-mediated signaling pathway" evidence=IEA]
[GO:0071285 "cellular response to lithium ion" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0005634 GO:GO:0008285 GO:GO:0051091 GO:GO:0006917
GO:GO:0032869 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0042593
GO:GO:0010887 GO:GO:0055098 GO:GO:0042953 GO:GO:0000122
GO:GO:0010891 GO:GO:0006919 GO:GO:0001012 GO:GO:0045165
GO:GO:0071285 GO:GO:0015909 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0060336 GO:GO:0010871
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468 KO:K08530
OMA:KTTDKSP GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577
OrthoDB:EOG41ZF9W HSSP:Q96J12 EMBL:AADN02013929 EMBL:AF163811
EMBL:AF470456 EMBL:AB045597 IPI:IPI00598191 RefSeq:NP_001001460.1
UniGene:Gga.3858 SMR:Q9I878 STRING:Q9I878
Ensembl:ENSGALT00000007976 GeneID:373928 KEGG:gga:373928
InParanoid:Q9I878 NextBio:20813460 Uniprot:Q9I878
Length = 475
Score = 289 (106.8 bits), Expect = 7.4e-23, P = 7.4e-23
Identities = 88/293 (30%), Positives = 146/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE-----LLQDFSERF 128
T DK P + + + + C ++ PLQ Q + + Q R
Sbjct: 234 ILTGKTTDK-SPFV--IYDMNSLRMGEDQIKCK---HASPLQEQNKEVAIRIFQRCQFRS 287
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-V 187
++++ EFAK IPGF L +DQVTLLK GV E++ LA + + + ++ +G+
Sbjct: 288 VEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNK--DGVLISDGQGF 345
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E
Sbjct: 346 MTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 405
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 406 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTE 458
>UNIPROTKB|Q07869 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=IEA]
[GO:0006631 "fatty acid metabolic process" evidence=IEA]
[GO:0007507 "heart development" evidence=IEA] [GO:0008544
"epidermis development" evidence=IEA] [GO:0019902 "phosphatase
binding" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0032091 "negative regulation of protein
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0032868 "response to insulin stimulus"
evidence=IEA] [GO:0035095 "behavioral response to nicotine"
evidence=IEA] [GO:0042060 "wound healing" evidence=IEA] [GO:0042157
"lipoprotein metabolic process" evidence=IEA] [GO:0045776 "negative
regulation of blood pressure" evidence=IEA] [GO:0051525 "NFAT
protein binding" evidence=IEA] [GO:0070166 "enamel mineralization"
evidence=IEA] [GO:0097371 "MDM2/MDM4 family protein binding"
evidence=IEA] [GO:1901215 "negative regulation of neuron death"
evidence=IEA] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0008144 "drug binding" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0032099 "negative
regulation of appetite" evidence=ISS] [GO:0032000 "positive
regulation of fatty acid beta-oxidation" evidence=TAS] [GO:0015908
"fatty acid transport" evidence=TAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0008289 "lipid binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0006629 "lipid metabolic process" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0010745 "negative regulation of
macrophage derived foam cell differentiation" evidence=IC;IDA]
[GO:0010887 "negative regulation of cholesterol storage"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IDA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IDA] [GO:0046321 "positive regulation of
fatty acid oxidation" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0031624 "ubiquitin
conjugating enzyme binding" evidence=IPI] [GO:0072366 "regulation
of cellular ketone metabolic process by positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0045820 "negative regulation of glycolysis" evidence=IC]
[GO:0003707 "steroid hormone receptor activity" evidence=IDA]
[GO:0072369 "regulation of lipid transport by positive regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0072363 "regulation of glycolysis by positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IPI] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA] Reactome:REACT_71
Reactome:REACT_111217 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005654 GO:GO:0007507 GO:GO:0046872 GO:GO:0008144
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0001666
EMBL:CH471138 GO:GO:0045776 GO:GO:0006631 GO:GO:0015908
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0042157 GO:GO:0010887
GO:GO:0010745 GO:GO:0032868 GO:GO:0032000 GO:GO:0000122
GO:GO:0010891 GO:GO:0008289 GO:GO:0042060 GO:GO:0008544
GO:GO:0070166 GO:GO:0006367 DrugBank:DB01076 DrugBank:DB00641
Reactome:REACT_24941 GO:GO:0032099 eggNOG:NOG266867
DrugBank:DB01241 DrugBank:DB00636 DrugBank:DB01393 GO:GO:0045820
GO:GO:0072363 GO:GO:0072369 PDB:1K7L PDB:2NPA PDB:2P54 PDB:3ET1
PDB:3FEI PDB:3G8I PDBsum:1K7L PDBsum:2NPA PDBsum:2P54 PDBsum:3ET1
PDBsum:3FEI PDBsum:3G8I PDB:1KKQ PDBsum:1KKQ GO:GO:0010871
EMBL:AL078611 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
KO:K07294 OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:L02932
EMBL:S74349 EMBL:Y07619 EMBL:AB307690 EMBL:EU650667 EMBL:CR456547
EMBL:AK289821 EMBL:CR457435 EMBL:AY206718 EMBL:AL049856
IPI:IPI00020097 PIR:A49289 PIR:I56603 RefSeq:NP_001001928.1
RefSeq:NP_005027.2 UniGene:Hs.103110 UniGene:Hs.710044 PDB:1I7G
PDB:2REW PDB:2ZNN PDB:3KDT PDB:3KDU PDB:3SP6 PDB:3VI8 PDBsum:1I7G
PDBsum:2REW PDBsum:2ZNN PDBsum:3KDT PDBsum:3KDU PDBsum:3SP6
PDBsum:3VI8 ProteinModelPortal:Q07869 SMR:Q07869 DIP:DIP-241N
IntAct:Q07869 MINT:MINT-232229 STRING:Q07869 PhosphoSite:Q07869
DMDM:3041727 PRIDE:Q07869 DNASU:5465 Ensembl:ENST00000262735
Ensembl:ENST00000396000 Ensembl:ENST00000402126
Ensembl:ENST00000407236 GeneID:5465 KEGG:hsa:5465 UCSC:uc003bgw.1
GeneCards:GC22P046546 HGNC:HGNC:9232 MIM:170998 neXtProt:NX_Q07869
PharmGKB:PA280 InParanoid:Q07869 PhylomeDB:Q07869 BindingDB:Q07869
ChEMBL:CHEMBL239 DrugBank:DB01039 EvolutionaryTrace:Q07869
GenomeRNAi:5465 NextBio:21152 ArrayExpress:Q07869 Bgee:Q07869
CleanEx:HS_PPARA Genevestigator:Q07869 GermOnline:ENSG00000186951
Uniprot:Q07869
Length = 468
Score = 288 (106.4 bits), Expect = 8.8e-23, P = 8.8e-23
Identities = 86/293 (29%), Positives = 146/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDIEDSETADLKSLAKRIYEAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L +A +P + T C + TL L N +Q ++ ++ F +
Sbjct: 222 KVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 279
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 399 KMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTE 451
>UNIPROTKB|Q5EA13 [details] [associations]
symbol:PPARA "Peroxisome proliferative activated receptor,
alpha isoform 1" species:9913 "Bos taurus" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=ISS] [GO:0008544 "epidermis development" evidence=ISS]
[GO:0006631 "fatty acid metabolic process" evidence=ISS]
[GO:0004872 "receptor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0072369 "regulation of lipid transport
by positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0072366 "regulation of cellular ketone
metabolic process by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0072363 "regulation of
glycolysis by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070166 "enamel
mineralization" evidence=IEA] [GO:0046321 "positive regulation of
fatty acid oxidation" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0032099 "negative regulation of appetite"
evidence=IEA] [GO:0031624 "ubiquitin conjugating enzyme binding"
evidence=IEA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010871 "negative regulation
of receptor biosynthetic process" evidence=IEA] [GO:0008289 "lipid
binding" evidence=IEA] [GO:0008144 "drug binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0004872
GO:GO:0006631 GO:GO:0003700 GO:GO:0019217 GO:GO:0046321
GO:GO:0010887 GO:GO:0000122 GO:GO:0010891 GO:GO:0042060
GO:GO:0008544 GO:GO:0070166 GO:GO:0032099 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
KO:K07294 OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366
EMBL:DAAA02014949 EMBL:DAAA02014950 EMBL:DAAA02014951
EMBL:DAAA02014952 EMBL:BT020756 IPI:IPI00699935
RefSeq:NP_001029208.1 UniGene:Bt.18241 SMR:Q5EA13 STRING:Q5EA13
Ensembl:ENSBTAT00000010606 GeneID:281992 KEGG:bta:281992
InParanoid:Q5EA13 NextBio:20805860 Uniprot:Q5EA13
Length = 470
Score = 287 (106.1 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 86/295 (29%), Positives = 148/295 (50%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L F
Sbjct: 170 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLEDSETADLKSLAKRIYEAYLKN--FN 221
Query: 80 ADKIEP---MLRRAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--E 126
+KI+ + + +P + T C + TL L N +Q ++ ++ F +
Sbjct: 222 MNKIKARVILAGKTNNNPPFVIHDMETLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQ 279
Query: 127 RFS-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNG 185
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++
Sbjct: 280 CTSVETVTELTEFAKSIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGN 338
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N
Sbjct: 339 GFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH 398
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 399 IEKMQEGIVHVLKLHLQNNHPDDVFLFPKLLQKMADLRQLVTEHAQLVQVIKKTE 453
>UNIPROTKB|F1NRA6 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 EMBL:AADN02006773 EMBL:AADN02006774
EMBL:AADN02006775 EMBL:AADN02006776 EMBL:AADN02006777
EMBL:AADN02006778 EMBL:AADN02006779 IPI:IPI00593462
Ensembl:ENSGALT00000037308 ArrayExpress:F1NRA6 Uniprot:F1NRA6
Length = 468
Score = 285 (105.4 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 88/293 (30%), Positives = 146/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N E + E+ D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEILTGENY--VEDS---EMADLKSLAKRIHDAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L + +P + T C + TL L N +Q ++ ++ F +
Sbjct: 222 KVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 279
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ + EFAK IPGFS L +DQVTLLK GV+E + LA + + ++
Sbjct: 280 SVETVTKLTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKD-GMLVAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGHIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 399 KMQESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTE 451
>UNIPROTKB|O35507 [details] [associations]
symbol:PPARA "Peroxisome proliferator-activated receptor
alpha" species:10141 "Cavia porcellus" [GO:0008144 "drug binding"
evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS] [GO:0032099
"negative regulation of appetite" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003076 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0046321 GO:GO:0010887
GO:GO:0000122 GO:GO:0010891 GO:GO:0008289 GO:GO:0042060
GO:GO:0008544 GO:GO:0070166 GO:GO:0032099 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:AJ000222
RefSeq:NP_001166475.1 ProteinModelPortal:O35507 SMR:O35507
STRING:O35507 Ensembl:ENSCPOT00000001502 GeneID:100135604
InParanoid:O35507 Uniprot:O35507
Length = 467
Score = 280 (103.6 bits), Expect = 7.5e-22, P = 7.5e-22
Identities = 84/291 (28%), Positives = 142/291 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C + AE D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEV-----LTCDRDSEGAETADLKSLAKRIYEAYLKNFHMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPSTLACPLNPNSHPLQGQQELLQDFS--ERFS- 129
K +L + HP + T C + S ++ ++ ++ F + S
Sbjct: 222 KVKARIILAGKTSSHPLFVIHDMETLCTAEKTLMAKVVSDGIRDKEAEVRIFHCCQCVSV 281
Query: 130 PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV 189
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + ++ +
Sbjct: 282 ETVTNLTEFAKAIPGFASLDLNDQVTLLKYGVYEAIFTMLSSTMNKD-GMLVAYGHGFIT 340
Query: 190 RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
R+ + + F +M+ F+FA + N L L D++I LF + ++ R GL N + +E+M
Sbjct: 341 REFLKNLRKPFCDMMEPKFNFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIDHIEKM 400
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ + ++L L NHP+ L +L+ L DLR L H++ LV TE
Sbjct: 401 QEAIVHVLKLHLQSNHPDDTFLFPKLLQKLADLRQLVTEHAQ-LVQVIKTE 450
>ZFIN|ZDB-GENE-990415-211 [details] [associations]
symbol:pparab "peroxisome proliferator activated
receptor alpha b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-211 GO:GO:0005634 GO:GO:0046872 GO:GO:0009409
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 OMA:ICPLSPL EMBL:CR354430
IPI:IPI00864106 Ensembl:ENSDART00000076500 Uniprot:F1QYF6
Length = 461
Score = 277 (102.6 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 85/286 (29%), Positives = 137/286 (47%)
Query: 20 HNAPVRFGRVPKREKARILAA-MQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAF 78
HNA +RFGR+P+ EK R+ A + + K +K LA ++ + + ++ T
Sbjct: 165 HNA-IRFGRMPQSEKLRLKAEILTGERDVKDDQKTLAKQIYEAYVKNFNMNKSKARTILT 223
Query: 79 TADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFS--ERFS-PTIRDV 135
P + E T T + + L + ++ F + S T+ ++
Sbjct: 224 GKTSTPPFVIHDME--TLQLAEQTFVAKMMGSCGGLLNKDPEVRIFHCCQCTSVETVTEL 281
Query: 136 VEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNGEVLVRDSIH 194
EFAK +PGFS L +DQVTLLK GV E L LA CM ++ ++ + R+ +
Sbjct: 282 TEFAKSVPGFSNLDLNDQVTLLKYGVHEALFAMLASCM--NKDGLLVAYGSGFITREFLK 339
Query: 195 SSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLE 252
S F +M+ F FA + N L L D+++ LF + ++ R GL N +ERM+ +
Sbjct: 340 SLRRPFSDMMEPKFQFAMKFNSLELDDSDLALFVAAIICCGDRPGLVNVPHIERMQESIV 399
Query: 253 NMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
N+L L NHP+ L +L+ L DLR L H++ + + TE
Sbjct: 400 NVLHLHLKSNHPDHGFLFPKLLQKLVDLRQLVTEHAQLIQEIKKTE 445
>UNIPROTKB|O18971 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9913 "Bos taurus" [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045165 "cell fate commitment" evidence=ISS]
[GO:0030855 "epithelial cell differentiation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0045598 "regulation of
fat cell differentiation" evidence=ISS] [GO:0050872 "white fat cell
differentiation" evidence=ISS] [GO:0045600 "positive regulation of
fat cell differentiation" evidence=ISS] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0032526 "response to retinoic acid" evidence=ISS] [GO:0071285
"cellular response to lithium ion" evidence=IEA] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling
pathway" evidence=IEA] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=IEA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0048662 "negative regulation of
smooth muscle cell proliferation" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045713 "low-density lipoprotein particle
receptor biosynthetic process" evidence=IEA] [GO:0042953
"lipoprotein transport" evidence=IEA] [GO:0042593 "glucose
homeostasis" evidence=IEA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA] [GO:0033613
"activating transcription factor binding" evidence=IEA] [GO:0032869
"cellular response to insulin stimulus" evidence=IEA] [GO:0030224
"monocyte differentiation" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0015909 "long-chain fatty acid
transport" evidence=IEA] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=IEA] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006919
"activation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0001012 "RNA polymerase II
regulatory region DNA binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 GO:GO:0008285 GO:GO:0051091
GO:GO:0006917 GO:GO:0032869 GO:GO:0046872 GO:GO:0003677
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0050873 GO:GO:0050872 GO:GO:0003700
GO:GO:0045600 GO:GO:0003682 GO:GO:0042593 GO:GO:0010887
GO:GO:0055098 GO:GO:0042953 GO:GO:0000122 GO:GO:0010891
GO:GO:0006919 GO:GO:0032526 GO:GO:0008217 GO:GO:0001890
GO:GO:0001012 GO:GO:0045165 GO:GO:0030374 GO:GO:0030855
GO:GO:0048469 GO:GO:0030224 GO:GO:0071285 GO:GO:0015909
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 GO:GO:0060336
GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004 EMBL:Y12420
EMBL:Y12419 EMBL:AY179866 EMBL:BC116098 IPI:IPI00693988
IPI:IPI00701013 PIR:JC5777 RefSeq:NP_851367.1 UniGene:Bt.3862
ProteinModelPortal:O18971 SMR:O18971 STRING:O18971 PRIDE:O18971
Ensembl:ENSBTAT00000001760 Ensembl:ENSBTAT00000044038
Ensembl:ENSBTAT00000044042 GeneID:281993 KEGG:bta:281993 CTD:5468
InParanoid:O18971 KO:K08530 OMA:KTTDKSP NextBio:20805861
GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577 Uniprot:O18971
Length = 505
Score = 276 (102.2 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 84/290 (28%), Positives = 142/290 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACP-LNPNSHPLQGQQ-ELLQDFSERFSPT 131
T DK P + + + + ++P P + + Q R
Sbjct: 264 ILTGKTTDK-SPFV--IYDMNSLMMGEDKIKFKHISPLQEPSKEVAIRIFQGCQFRSVEA 320
Query: 132 IRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE-VLVR 190
++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+ + R
Sbjct: 321 VQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTR 378
Query: 191 DSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248
+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N + +E ++
Sbjct: 379 EFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQ 438
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 439 DNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 488
>UNIPROTKB|O19052 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9986 "Oryctolagus cuniculus" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISS]
[GO:0032526 "response to retinoic acid" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0032526 GO:GO:0030522 GO:GO:0030374 eggNOG:NOG266867
HOGENOM:HOG000261626 HOVERGEN:HBG106004 InterPro:IPR022590
Pfam:PF12577 OrthoDB:EOG41ZF9W EMBL:U84893 UniGene:Ocu.2191
ProteinModelPortal:O19052 SMR:O19052 STRING:O19052 Uniprot:O19052
Length = 475
Score = 275 (101.9 bits), Expect = 3.1e-21, P = 3.1e-21
Identities = 88/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 234 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 285
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 286 RSVEAVQEITEYAKNIPGFVSLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 343
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 344 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 403
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 404 IEDIQDNLLQALELQLKLNHPEASQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 458
>RGD|3369 [details] [associations]
symbol:Ppara "peroxisome proliferator activated receptor alpha"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IEA;ISO] [GO:0001666 "response to hypoxia"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=ISO;TAS] [GO:0004872 "receptor activity" evidence=ISO]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=ISO;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006631 "fatty acid metabolic
process" evidence=ISO;IMP] [GO:0007507 "heart development"
evidence=IEP] [GO:0008144 "drug binding" evidence=ISO;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008289 "lipid
binding" evidence=ISO;ISS] [GO:0008544 "epidermis development"
evidence=IEA;ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010745 "negative regulation of macrophage derived
foam cell differentiation" evidence=ISO] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IEA;ISO]
[GO:0010887 "negative regulation of cholesterol storage"
evidence=IEA;ISO] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA;ISO] [GO:0019217 "regulation of fatty acid
metabolic process" evidence=ISO;TAS] [GO:0019902 "phosphatase
binding" evidence=IPI] [GO:0019904 "protein domain specific binding"
evidence=IDA] [GO:0030522 "intracellular receptor mediated signaling
pathway" evidence=ISO] [GO:0031624 "ubiquitin conjugating enzyme
binding" evidence=IEA;ISO] [GO:0032091 "negative regulation of
protein binding" evidence=IMP] [GO:0032099 "negative regulation of
appetite" evidence=ISO;ISS] [GO:0032403 "protein complex binding"
evidence=IMP] [GO:0032868 "response to insulin stimulus"
evidence=IMP] [GO:0035095 "behavioral response to nicotine"
evidence=IDA] [GO:0042060 "wound healing" evidence=IEA;ISO]
[GO:0042157 "lipoprotein metabolic process" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045776
"negative regulation of blood pressure" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046321 "positive
regulation of fatty acid oxidation" evidence=IEA;ISO] [GO:0051525
"NFAT protein binding" evidence=IPI] [GO:0070166 "enamel
mineralization" evidence=IEA;ISO] [GO:0072363 "regulation of
glycolysis by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0072366 "regulation of
cellular ketone metabolic process by positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0072369 "regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0097371 "MDM2/MDM4 family protein binding" evidence=IPI]
[GO:1901215 "negative regulation of neuron death" evidence=IMP;IDA]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3369
GO:GO:0005634 GO:GO:0019904 GO:GO:0045893 GO:GO:0007507 GO:GO:0032403
GO:GO:0046872 GO:GO:0008144 GO:GO:0035095 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0001666 GO:GO:1901215 GO:GO:0045776
GO:GO:0006631 GO:GO:0019217 GO:GO:0046321 GO:GO:0042157 GO:GO:0010887
GO:GO:0032868 GO:GO:0000122 GO:GO:0010891 GO:GO:0008289 GO:GO:0032091
GO:GO:0042060 GO:GO:0008544 GO:GO:0070166 GO:GO:0032099
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 GO:GO:2000678
GO:GO:0072363 GO:GO:0072369 GO:GO:0010871 CTD:5465
HOGENOM:HOG000261626 HOVERGEN:HBG106004 KO:K07294 OMA:ICPLSPL
OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:M88592 IPI:IPI00204351
PIR:A45288 RefSeq:NP_037328.1 UniGene:Rn.9753
ProteinModelPortal:P37230 SMR:P37230 DIP:DIP-29529N STRING:P37230
PhosphoSite:P37230 PRIDE:P37230 Ensembl:ENSRNOT00000030082
GeneID:25747 KEGG:rno:25747 InParanoid:P37230 BindingDB:P37230
ChEMBL:CHEMBL2129 NextBio:607925 Genevestigator:P37230
GermOnline:ENSRNOG00000021463 Uniprot:P37230
Length = 468
Score = 274 (101.5 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 82/293 (27%), Positives = 144/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLAKRIHEAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L + +P + T C + TL + N ++ ++ ++ F +
Sbjct: 222 KVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANG--VENKEAEVRFFHCCQCM 279
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKD-GMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTE 451
>UNIPROTKB|F1NX54 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 EMBL:AADN02006773 EMBL:AADN02006774
EMBL:AADN02006775 EMBL:AADN02006776 EMBL:AADN02006777
EMBL:AADN02006778 EMBL:AADN02006779 IPI:IPI00818507
ProteinModelPortal:F1NX54 Ensembl:ENSGALT00000023026 OMA:PCKINIA
ArrayExpress:F1NX54 Uniprot:F1NX54
Length = 474
Score = 274 (101.5 bits), Expect = 4.0e-21, P = 4.0e-21
Identities = 90/297 (30%), Positives = 149/297 (50%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N E + E+ D + + + A+L
Sbjct: 170 HNA-IRFGRMPRSEKAKLKAEILTGENY--VEDS---EMADLKSLAKRIHDAYLKNFNMN 223
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L + +P + T C + TL L N +Q ++ ++ F +
Sbjct: 224 KVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 281
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ + EFAK IPGFS L +DQVTLLK GV+E + LA + + ++
Sbjct: 282 SVETVTKLTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKD-GMLVAYGNGF 340
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLF-SSIV---VISPSRSGLRNK 241
+ R+ + S F +M+ FDFA + N L L D++I LF ++I+ V+ R GL N
Sbjct: 341 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGVLRIDRPGLVNV 400
Query: 242 ELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E+M+ + ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 401 GHIEKMQESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTE 457
>UNIPROTKB|O62807 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9823 "Sus scrofa" [GO:0050872 "white fat cell
differentiation" evidence=ISS] [GO:0045600 "positive regulation of
fat cell differentiation" evidence=ISS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0032526 "response to retinoic acid"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071285
"cellular response to lithium ion" evidence=IEA] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling
pathway" evidence=IEA] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=IEA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0048662 "negative regulation of
smooth muscle cell proliferation" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045713 "low-density lipoprotein particle
receptor biosynthetic process" evidence=IEA] [GO:0045165 "cell fate
commitment" evidence=IEA] [GO:0042953 "lipoprotein transport"
evidence=IEA] [GO:0042593 "glucose homeostasis" evidence=IEA]
[GO:0035357 "peroxisome proliferator activated receptor signaling
pathway" evidence=IEA] [GO:0033613 "activating transcription factor
binding" evidence=IEA] [GO:0032869 "cellular response to insulin
stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0030224 "monocyte
differentiation" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0015909 "long-chain fatty acid transport"
evidence=IEA] [GO:0010891 "negative regulation of sequestering of
triglyceride" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010871 "negative regulation
of receptor biosynthetic process" evidence=IEA] [GO:0008217
"regulation of blood pressure" evidence=IEA] [GO:0008144 "drug
binding" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0001012 "RNA polymerase II regulatory region DNA binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003077 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0051091 GO:GO:0006917 GO:GO:0032869
GO:GO:0046872 GO:GO:0003677 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0042593
GO:GO:0010887 GO:GO:0055098 GO:GO:0042953 GO:GO:0000122
GO:GO:0010891 GO:GO:0006919 GO:GO:0032526 GO:GO:0008217
GO:GO:0001890 GO:GO:0001012 GO:GO:0045165 GO:GO:0030374
GO:GO:0030855 GO:GO:0048469 GO:GO:0030224 GO:GO:0071285
GO:GO:0015909 eggNOG:NOG266867 GeneTree:ENSGT00700000104361
GO:GO:0060336 GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004
CTD:5468 KO:K08530 OMA:KTTDKSP GO:GO:0045713 InterPro:IPR022590
Pfam:PF12577 EMBL:AF059245 EMBL:AF103946 EMBL:AJ006756
EMBL:AJ006757 EMBL:AB097930 PIR:JE0280 RefSeq:NP_999544.1
UniGene:Ssc.14475 ProteinModelPortal:O62807 SMR:O62807
STRING:O62807 Ensembl:ENSSSCT00000012672 GeneID:397671
KEGG:ssc:397671 ArrayExpress:O62807 Uniprot:O62807
Length = 504
Score = 275 (101.9 bits), Expect = 4.0e-21, P = 4.0e-21
Identities = 88/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 204 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 262
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 263 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 314
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 315 RSVEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 372
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 373 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 432
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 433 IEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 487
>UNIPROTKB|E9PFV2 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 InterPro:IPR022590 Pfam:PF12577 EMBL:AC090947
EMBL:AC091492 EMBL:AC093174 HGNC:HGNC:9236 ChiTaRS:PPARG
IPI:IPI00791321 ProteinModelPortal:E9PFV2 SMR:E9PFV2 PRIDE:E9PFV2
Ensembl:ENST00000397026 ArrayExpress:E9PFV2 Bgee:E9PFV2
Uniprot:E9PFV2
Length = 483
Score = 274 (101.5 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 88/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 183 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 241
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 242 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 293
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 294 RSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 351
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 352 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 411
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 412 IEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 466
>UNIPROTKB|F5H830 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0006635 "fatty acid beta-oxidation" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0008366 "axon ensheathment" evidence=IEA]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0031589 "cell-substrate adhesion" evidence=IEA] [GO:0042060
"wound healing" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0043616 "keratinocyte proliferation" evidence=IEA] [GO:0045598
"regulation of fat cell differentiation" evidence=IEA] [GO:0050680
"negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0051546 "keratinocyte migration" evidence=IEA]
[GO:0060612 "adipose tissue development" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003075 InterPro:IPR008946
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00398 PRINTS:PR01288
PRINTS:PR01290 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0043616 GO:GO:0030154 GO:GO:0046872
GO:GO:0008284 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0060612 GO:GO:0015908 GO:GO:0006635 GO:GO:0000122
GO:GO:0001890 GO:GO:0042060 GO:GO:0030522 GO:GO:0042640
GO:GO:0045598 GO:GO:0050680 GO:GO:0031589 GO:GO:0008366
EMBL:AL022721 GO:GO:0051546 HGNC:HGNC:9235 ChiTaRS:PPARD
IPI:IPI01009482 ProteinModelPortal:F5H830 SMR:F5H830
Ensembl:ENST00000540939 ArrayExpress:F5H830 Bgee:F5H830
Uniprot:F5H830
Length = 338
Score = 255 (94.8 bits), Expect = 4.5e-21, P = 4.5e-21
Identities = 83/293 (28%), Positives = 137/293 (46%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + + ++ + A+L + + A+L T
Sbjct: 37 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQV--ADL---KAFSKHIYNAYLKNFNMT 90
Query: 80 ADKIEPMLRRAREH--PTYTACPSTL-----ACPLNPNSHPLQGQQELLQDFSERFS--- 129
K +L H P TL + L +E+ R
Sbjct: 91 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT 150
Query: 130 -PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 151 VETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 208
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 209 VTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVE 268
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 269 AIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTE 321
>UNIPROTKB|Q4U3Q4 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9615 "Canis lupus familiaris" [GO:0050872 "white fat
cell differentiation" evidence=ISS] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=ISS] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032526 "response to
retinoic acid" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071285 "cellular response to lithium ion" evidence=IEA]
[GO:0060336 "negative regulation of interferon-gamma-mediated
signaling pathway" evidence=IEA] [GO:0055098 "response to
low-density lipoprotein particle stimulus" evidence=IEA]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0050873 "brown fat
cell differentiation" evidence=IEA] [GO:0048662 "negative
regulation of smooth muscle cell proliferation" evidence=IEA]
[GO:0048469 "cell maturation" evidence=IEA] [GO:0046965 "retinoid X
receptor binding" evidence=IEA] [GO:0045713 "low-density
lipoprotein particle receptor biosynthetic process" evidence=IEA]
[GO:0045165 "cell fate commitment" evidence=IEA] [GO:0042953
"lipoprotein transport" evidence=IEA] [GO:0042593 "glucose
homeostasis" evidence=IEA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA] [GO:0033613
"activating transcription factor binding" evidence=IEA] [GO:0032869
"cellular response to insulin stimulus" evidence=IEA] [GO:0030855
"epithelial cell differentiation" evidence=IEA] [GO:0030224
"monocyte differentiation" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0015909 "long-chain fatty acid
transport" evidence=IEA] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=IEA] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006919
"activation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0001012 "RNA polymerase II
regulatory region DNA binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0005634 GO:GO:0008285 GO:GO:0051091 GO:GO:0006917
GO:GO:0032869 GO:GO:0046872 GO:GO:0003677 GO:GO:0008144
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0050873 GO:GO:0050872 GO:GO:0045600 GO:GO:0003682
GO:GO:0042593 GO:GO:0010887 GO:GO:0055098 GO:GO:0042953
GO:GO:0000122 GO:GO:0010891 GO:GO:0006919 GO:GO:0032526
GO:GO:0008217 GO:GO:0001890 GO:GO:0001012 GO:GO:0045165
GO:GO:0030374 GO:GO:0030855 GO:GO:0048469 GO:GO:0030224
GO:GO:0071285 GO:GO:0015909 eggNOG:NOG266867 GO:GO:0060336
GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468
KO:K08530 GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577
EMBL:DQ016141 RefSeq:NP_001019803.1 UniGene:Cfa.3467
ProteinModelPortal:Q4U3Q4 SMR:Q4U3Q4 STRING:Q4U3Q4 GeneID:403606
KEGG:cfa:403606 OrthoDB:EOG41ZF9W BindingDB:Q4U3Q4
ChEMBL:CHEMBL1932903 NextBio:20817111 Uniprot:Q4U3Q4
Length = 505
Score = 274 (101.5 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 88/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 264 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 315
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 316 RSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 373
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 374 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 433
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 434 IEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 488
>UNIPROTKB|P37231 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0002674 "negative regulation of acute
inflammatory response" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0007507 "heart development"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0019395 "fatty acid oxidation" evidence=IEA] [GO:0030308
"negative regulation of cell growth" evidence=IEA] [GO:0031000
"response to caffeine" evidence=IEA] [GO:0031100 "organ
regeneration" evidence=IEA] [GO:0033189 "response to vitamin A"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0043627 "response to estrogen stimulus" evidence=IEA]
[GO:0046321 "positive regulation of fatty acid oxidation"
evidence=IEA] [GO:0048714 "positive regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0050873 "brown fat cell
differentiation" evidence=IEA] [GO:0051974 "negative regulation of
telomerase activity" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0050872 "white fat cell
differentiation" evidence=ISS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0007584 "response
to nutrient" evidence=TAS] [GO:0006629 "lipid metabolic process"
evidence=TAS] [GO:0045600 "positive regulation of fat cell
differentiation" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0010745 "negative regulation of macrophage
derived foam cell differentiation" evidence=IC;IDA] [GO:0010887
"negative regulation of cholesterol storage" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS;IDA] [GO:0010871 "negative
regulation of receptor biosynthetic process" evidence=IDA]
[GO:0010891 "negative regulation of sequestering of triglyceride"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0008144 "drug binding" evidence=IDA] [GO:0008217
"regulation of blood pressure" evidence=IMP] [GO:0032869 "cellular
response to insulin stimulus" evidence=IMP] [GO:0033613 "activating
transcription factor binding" evidence=IDA] [GO:0042593 "glucose
homeostasis" evidence=IMP] [GO:0055088 "lipid homeostasis"
evidence=TAS] [GO:0001890 "placenta development" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;IDA] [GO:0004955 "prostaglandin receptor
activity" evidence=TAS] [GO:0030224 "monocyte differentiation"
evidence=IDA] [GO:0046965 "retinoid X receptor binding"
evidence=IDA] [GO:0033993 "response to lipid" evidence=ISS]
[GO:0050544 "arachidonic acid binding" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0015909 "long-chain fatty acid
transport" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0030855 "epithelial cell differentiation" evidence=ISS]
[GO:0045165 "cell fate commitment" evidence=ISS] [GO:0007165
"signal transduction" evidence=IDA] [GO:0042953 "lipoprotein
transport" evidence=IDA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0045713 "low-density lipoprotein
particle receptor biosynthetic process" evidence=IDA] [GO:0055098
"response to low-density lipoprotein particle stimulus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0048469 "cell
maturation" evidence=IDA] [GO:0045087 "innate immune response"
evidence=TAS] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISS;IDA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IDA]
[GO:0006917 "induction of apoptosis" evidence=IDA] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling
pathway" evidence=IMP] [GO:0048662 "negative regulation of smooth
muscle cell proliferation" evidence=IDA] [GO:0035357 "peroxisome
proliferator activated receptor signaling pathway" evidence=IMP]
[GO:0060694 "regulation of cholesterol transporter activity"
evidence=IC] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003077 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 Reactome:REACT_111045
GO:GO:0005654 GO:GO:0007507 GO:GO:0051091 GO:GO:0006917
GO:GO:0030308 GO:GO:0032869 GO:GO:0042493 EMBL:CH471055
GO:GO:0046872 Pathway_Interaction_DB:nfat_tfpathway GO:GO:0008144
GO:GO:0031100 GO:GO:0009409 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873 GO:GO:0007584
GO:GO:0006629 GO:GO:0045087 GO:GO:0002674 GO:GO:0031000
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0019395
GO:GO:0042593 GO:GO:0046321 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0010887 GO:GO:0010745 GO:GO:0055098 GO:GO:0042953
GO:GO:0000122 GO:GO:0010891 GO:GO:0044212 GO:GO:0055088
GO:GO:0006919 GO:GO:0032526 GO:GO:0008217 DrugBank:DB00159
DrugBank:DB00197 GO:GO:0048714 GO:GO:0043627 GO:GO:0001890
GO:GO:0001012 GO:GO:0048662 MIM:601665 GO:GO:0033189 GO:GO:0050544
GO:GO:0006367 DrugBank:DB01076 GO:GO:0045165 GO:GO:0030374
GO:GO:0030855 GO:GO:0048469 GO:GO:0046965 GO:GO:0030224
GO:GO:0071285 GO:GO:0015909 eggNOG:NOG266867 DrugBank:DB01132
DrugBank:DB00412 MIM:137800 GO:GO:0060336 Orphanet:360
GO:GO:0033613 GO:GO:0035357 GO:GO:0051974 PDB:1FM6 PDB:1FM9
PDB:1K74 PDB:1RDT PDB:2FVJ PDB:2GTK PDB:2HFP PDB:2PRG PDB:3CWD
PDB:3ET3 PDB:3FEJ PDB:3FUR PDB:3G9E PDB:3H0A PDB:3LMP PDB:3QT0
PDB:3S9S PDB:3T03 PDB:3V9Y PDB:3VN2 PDB:4F9M PDBsum:1FM6
PDBsum:1FM9 PDBsum:1K74 PDBsum:1RDT PDBsum:2FVJ PDBsum:2GTK
PDBsum:2HFP PDBsum:2PRG PDBsum:3CWD PDBsum:3ET3 PDBsum:3FEJ
PDBsum:3FUR PDBsum:3G9E PDBsum:3H0A PDBsum:3LMP PDBsum:3QT0
PDBsum:3S9S PDBsum:3T03 PDBsum:3V9Y PDBsum:3VN2 PDBsum:4F9M
PDB:3DZU PDB:3DZY PDB:3E00 PDBsum:3DZU PDBsum:3DZY PDBsum:3E00
PDB:1WM0 PDBsum:1WM0 PDB:1ZGY PDBsum:1ZGY GO:GO:0010871
HOVERGEN:HBG106004 CTD:5468 KO:K08530 OMA:KTTDKSP GO:GO:0045713
InterPro:IPR022590 Pfam:PF12577 EMBL:U79012 EMBL:U63415 EMBL:D83233
EMBL:L40904 EMBL:AB005526 EMBL:X90563 EMBL:DQ356894 EMBL:BT007281
EMBL:AK290581 EMBL:AB451337 EMBL:AB451486 EMBL:AY157024
EMBL:AC090947 EMBL:AC091492 EMBL:AC093174 EMBL:BC006811
IPI:IPI00020897 IPI:IPI00853091 IPI:IPI00926009 PIR:JC4859
PIR:PC4290 PIR:PC4429 RefSeq:NP_005028.4 RefSeq:NP_056953.2
RefSeq:NP_619725.2 RefSeq:NP_619726.2 UniGene:Hs.162646 PDB:1I7I
PDB:1KNU PDB:1NYX PDB:1PRG PDB:1ZEO PDB:2ATH PDB:2F4B PDB:2G0G
PDB:2G0H PDB:2HWQ PDB:2HWR PDB:2I4J PDB:2I4P PDB:2I4Z PDB:2OM9
PDB:2P4Y PDB:2POB PDB:2Q59 PDB:2Q5P PDB:2Q5S PDB:2Q61 PDB:2Q6R
PDB:2Q6S PDB:2Q8S PDB:2QMV PDB:2VSR PDB:2VST PDB:2VV0 PDB:2VV1
PDB:2VV2 PDB:2VV3 PDB:2VV4 PDB:2XKW PDB:2YFE PDB:2ZK0 PDB:2ZK1
PDB:2ZK2 PDB:2ZK3 PDB:2ZK4 PDB:2ZK5 PDB:2ZK6 PDB:2ZNO PDB:2ZVT
PDB:3ADS PDB:3ADT PDB:3ADU PDB:3ADV PDB:3ADW PDB:3ADX PDB:3AN3
PDB:3AN4 PDB:3B0Q PDB:3B0R PDB:3B1M PDB:3B3K PDB:3BC5 PDB:3CDP
PDB:3CDS PDB:3CS8 PDB:3D6D PDB:3ET0 PDB:3GBK PDB:3HO0 PDB:3HOD
PDB:3IA6 PDB:3K8S PDB:3KMG PDB:3NOA PDB:3OSI PDB:3OSW PDB:3PBA
PDB:3PO9 PDB:3PRG PDB:3R5N PDB:3R8A PDB:3R8I PDB:3SZ1 PDB:3TY0
PDB:3U9Q PDB:3V9T PDB:3V9V PDB:3VJH PDB:3VJI PDB:4A4V PDB:4A4W
PDB:4PRG PDBsum:1I7I PDBsum:1KNU PDBsum:1NYX PDBsum:1PRG
PDBsum:1ZEO PDBsum:2ATH PDBsum:2F4B PDBsum:2G0G PDBsum:2G0H
PDBsum:2HWQ PDBsum:2HWR PDBsum:2I4J PDBsum:2I4P PDBsum:2I4Z
PDBsum:2OM9 PDBsum:2P4Y PDBsum:2POB PDBsum:2Q59 PDBsum:2Q5P
PDBsum:2Q5S PDBsum:2Q61 PDBsum:2Q6R PDBsum:2Q6S PDBsum:2Q8S
PDBsum:2QMV PDBsum:2VSR PDBsum:2VST PDBsum:2VV0 PDBsum:2VV1
PDBsum:2VV2 PDBsum:2VV3 PDBsum:2VV4 PDBsum:2XKW PDBsum:2YFE
PDBsum:2ZK0 PDBsum:2ZK1 PDBsum:2ZK2 PDBsum:2ZK3 PDBsum:2ZK4
PDBsum:2ZK5 PDBsum:2ZK6 PDBsum:2ZNO PDBsum:2ZVT PDBsum:3ADS
PDBsum:3ADT PDBsum:3ADU PDBsum:3ADV PDBsum:3ADW PDBsum:3ADX
PDBsum:3AN3 PDBsum:3AN4 PDBsum:3B0Q PDBsum:3B0R PDBsum:3B1M
PDBsum:3B3K PDBsum:3BC5 PDBsum:3CDP PDBsum:3CDS PDBsum:3CS8
PDBsum:3D6D PDBsum:3ET0 PDBsum:3GBK PDBsum:3HO0 PDBsum:3HOD
PDBsum:3IA6 PDBsum:3K8S PDBsum:3KMG PDBsum:3NOA PDBsum:3OSI
PDBsum:3OSW PDBsum:3PBA PDBsum:3PO9 PDBsum:3PRG PDBsum:3R5N
PDBsum:3R8A PDBsum:3R8I PDBsum:3SZ1 PDBsum:3TY0 PDBsum:3U9Q
PDBsum:3V9T PDBsum:3V9V PDBsum:3VJH PDBsum:3VJI PDBsum:4A4V
PDBsum:4A4W PDBsum:4PRG ProteinModelPortal:P37231 SMR:P37231
DIP:DIP-35528N IntAct:P37231 MINT:MINT-5209723 STRING:P37231
PhosphoSite:P37231 DMDM:13432234 PRIDE:P37231 DNASU:5468
Ensembl:ENST00000287820 Ensembl:ENST00000309576
Ensembl:ENST00000396999 Ensembl:ENST00000397010
Ensembl:ENST00000397012 Ensembl:ENST00000397015 GeneID:5468
KEGG:hsa:5468 UCSC:uc003bwr.3 GeneCards:GC03P012328 HGNC:HGNC:9236
HPA:CAB004282 MIM:601487 MIM:604367 MIM:606641 MIM:609338
neXtProt:NX_P37231 Orphanet:79083 PharmGKB:PA281 InParanoid:P37231
PhylomeDB:P37231 BindingDB:P37231 ChEMBL:CHEMBL235 ChiTaRS:PPARG
EvolutionaryTrace:P37231 GenomeRNAi:5468 NextBio:21164
ArrayExpress:P37231 Bgee:P37231 Genevestigator:P37231
GermOnline:ENSG00000132170 GO:GO:0004955 GO:GO:0060694
Uniprot:P37231
Length = 505
Score = 274 (101.5 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 88/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 264 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 315
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 316 RSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 373
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 374 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 433
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 434 IEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 488
>UNIPROTKB|O18924 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:9544 "Macaca mulatta" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=ISS] [GO:0032526
"response to retinoic acid" evidence=ISS] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0050872 "white fat cell
differentiation" evidence=ISS] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003077 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0051091 GO:GO:0006917 GO:GO:0032869
GO:GO:0046872 GO:GO:0003677 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873
GO:GO:0050872 GO:GO:0045600 GO:GO:0003682 GO:GO:0042593
GO:GO:0010887 GO:GO:0055098 GO:GO:0042953 GO:GO:0000122
GO:GO:0010891 GO:GO:0006919 GO:GO:0032526 GO:GO:0008217
GO:GO:0001890 GO:GO:0001012 GO:GO:0045165 GO:GO:0030374
GO:GO:0030855 GO:GO:0048469 GO:GO:0030224 GO:GO:0071285
GO:GO:0015909 eggNOG:NOG266867 GO:GO:0060336 GO:GO:0010871
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468 KO:K08530
GO:GO:0045713 InterPro:IPR022590 Pfam:PF12577 OrthoDB:EOG41ZF9W
EMBL:AF033103 EMBL:AF033343 EMBL:AF033342 RefSeq:NP_001028032.1
UniGene:Mmu.3422 ProteinModelPortal:O18924 SMR:O18924
MINT:MINT-138526 STRING:O18924 GeneID:574190 KEGG:mcc:574190
InParanoid:O18924 NextBio:19981584 Uniprot:O18924
Length = 505
Score = 274 (101.5 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 88/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 264 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 315
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 316 RSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 373
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 374 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 433
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 434 IEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 488
>UNIPROTKB|F1RS46 [details] [associations]
symbol:RARB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0061037 "negative regulation of cartilage development"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0048566 "embryonic digestive
tract development" evidence=IEA] [GO:0048048 "embryonic eye
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
differentiation" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003417
"growth plate cartilage development" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 Pfam:PF00104 PRINTS:PR00398
PRINTS:PR01292 SMART:SM00430 GO:GO:0005634 GO:GO:0008285
GO:GO:0022008 GO:GO:0043565 GO:GO:0003707 Gene3D:1.10.565.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122 GO:GO:0043065
GO:GO:0048566 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0001657 GO:GO:0021756 GO:GO:0032331 GO:GO:0003417
GO:GO:0003708 GO:GO:0061037 GO:GO:0055012
GeneTree:ENSGT00680000099662 EMBL:CU582923 EMBL:FP012232
Ensembl:ENSSSCT00000012278 OMA:KEGSACS Uniprot:F1RS46
Length = 303
Score = 253 (94.1 bits), Expect = 7.5e-21, P = 7.5e-21
Identities = 60/216 (27%), Positives = 112/216 (51%)
Query: 81 DKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
D + +R+A + + C + H ++ L FSE + I +VEFAK
Sbjct: 33 DDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAK 92
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
R+PGF+ L DQ+TLLKA ++L++R+ + + ++M +G L R +H++
Sbjct: 93 RLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGP 152
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L D +F FA +L L + DTE GL S+I +I R L V++++ L L +
Sbjct: 153 LTDLVFTFASQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIR 212
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 213 RRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 248
>UNIPROTKB|Q95KZ8 [details] [associations]
symbol:PPARgamma2 "Peroxisome proliferator-activated
receptor gamma 2" species:9541 "Macaca fascicularis" [GO:0045600
"positive regulation of fat cell differentiation" evidence=ISS]
[GO:0050872 "white fat cell differentiation" evidence=ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0050872 GO:GO:0045600 GO:GO:0030522 HOVERGEN:HBG106004
InterPro:IPR022590 Pfam:PF12577 EMBL:AY048695 HSSP:Q96J12
ProteinModelPortal:Q95KZ8 SMR:Q95KZ8 Uniprot:Q95KZ8
Length = 505
Score = 272 (100.8 bits), Expect = 8.7e-21, P = 8.7e-21
Identities = 88/295 (29%), Positives = 141/295 (47%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 264 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 315
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + + G+
Sbjct: 316 RSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVFISEGQ 373
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 374 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 433
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+L+ + DLR + H + L + TE
Sbjct: 434 IEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTE 488
>UNIPROTKB|P57797 [details] [associations]
symbol:PPARG "Peroxisome proliferator-activated receptor
gamma" species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0030374 "ligand-dependent nuclear receptor
transcription coactivator activity" evidence=ISS] [GO:0032526
"response to retinoic acid" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0032526 GO:GO:0030522 GO:GO:0030374 HOVERGEN:HBG106004
CTD:5468 InterPro:IPR022590 Pfam:PF12577 EMBL:Z30972 PIR:JC4264
RefSeq:NP_001231210.1 ProteinModelPortal:P57797 SMR:P57797
PRIDE:P57797 GeneID:100689245 Uniprot:P57797
Length = 475
Score = 271 (100.5 bits), Expect = 8.8e-21, P = 8.8e-21
Identities = 87/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 175 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 233
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 234 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 285
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 286 RSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 343
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 344 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 403
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+++ + DLR + H + L + TE
Sbjct: 404 IEDIQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTE 458
>MGI|MGI:104740 [details] [associations]
symbol:Ppara "peroxisome proliferator activated receptor
alpha" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0001666 "response
to hypoxia" evidence=ISO] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;IMP] [GO:0003707 "steroid hormone receptor
activity" evidence=ISO;TAS] [GO:0004872 "receptor activity"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0006006 "glucose
metabolic process" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO;TAS] [GO:0006629 "lipid
metabolic process" evidence=TAS] [GO:0006631 "fatty acid metabolic
process" evidence=ISO;IMP;TAS] [GO:0008144 "drug binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008289 "lipid binding" evidence=ISO;IDA] [GO:0008544
"epidermis development" evidence=IMP] [GO:0010468 "regulation of
gene expression" evidence=IMP] [GO:0010745 "negative regulation of
macrophage derived foam cell differentiation" evidence=ISO]
[GO:0010871 "negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0010887 "negative regulation of cholesterol
storage" evidence=ISO] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=ISO] [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IMP] [GO:0019902
"phosphatase binding" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO] [GO:0031624 "ubiquitin
conjugating enzyme binding" evidence=ISO] [GO:0032091 "negative
regulation of protein binding" evidence=ISO] [GO:0032099 "negative
regulation of appetite" evidence=IMP] [GO:0032403 "protein complex
binding" evidence=ISO] [GO:0032868 "response to insulin stimulus"
evidence=ISO] [GO:0035095 "behavioral response to nicotine"
evidence=ISO] [GO:0042060 "wound healing" evidence=IMP] [GO:0042157
"lipoprotein metabolic process" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=TAS] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045776 "negative
regulation of blood pressure" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IGI;IDA] [GO:0046321 "positive
regulation of fatty acid oxidation" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=TAS] [GO:0051525 "NFAT
protein binding" evidence=ISO] [GO:0070166 "enamel mineralization"
evidence=IMP] [GO:0072363 "regulation of glycolysis by positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0072366 "regulation of cellular ketone metabolic
process by positive regulation of transcription from RNA polymerase
II promoter" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0097371 "MDM2/MDM4 family
protein binding" evidence=ISO] [GO:1901215 "negative regulation of
neuron death" evidence=ISO] [GO:2000678 "negative regulation of
transcription regulatory region DNA binding" evidence=ISO]
Reactome:REACT_112621 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003076
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:104740 GO:GO:0005654 GO:GO:0007507 GO:GO:0046872
GO:GO:0008144 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0001666 GO:GO:0045944 GO:GO:0045776 GO:GO:0006631
GO:GO:0003700 GO:GO:0006006 GO:GO:0046321 GO:GO:0042157
GO:GO:0010887 GO:GO:0032868 GO:GO:0000122 GO:GO:0010891
GO:GO:0008289 GO:GO:0046982 GO:GO:0042060 GO:GO:0008544
GO:GO:0070166 Reactome:REACT_109335 Reactome:REACT_24972
GO:GO:0032099 eggNOG:NOG266867 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 CTD:5465 HOGENOM:HOG000261626 HOVERGEN:HBG106004
KO:K07294 OMA:ICPLSPL OrthoDB:EOG4FFD1Q GO:GO:0072366 EMBL:X57638
EMBL:X75289 EMBL:X75290 EMBL:X75291 EMBL:X75292 EMBL:X75293
EMBL:X75294 EMBL:BC016892 EMBL:X89577 IPI:IPI00314804 PIR:JC2085
RefSeq:NP_001106889.1 RefSeq:NP_035274.2 UniGene:Mm.212789
ProteinModelPortal:P23204 SMR:P23204 DIP:DIP-5958N IntAct:P23204
STRING:P23204 PhosphoSite:P23204 PRIDE:P23204
Ensembl:ENSMUST00000057979 Ensembl:ENSMUST00000109422
Ensembl:ENSMUST00000109423 GeneID:19013 KEGG:mmu:19013
InParanoid:P23204 BindingDB:P23204 ChEMBL:CHEMBL2128 NextBio:295428
Bgee:P23204 CleanEx:MM_PPARA Genevestigator:P23204
GermOnline:ENSMUSG00000022383 Uniprot:P23204
Length = 468
Score = 270 (100.1 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 82/293 (27%), Positives = 144/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + C +E D + + + A+L
Sbjct: 168 HNA-IRFGRMPRSEKAKLKAEI-----LTCEHDLKDSETADLKSLGKRIHEAYLKNFNMN 221
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L + +P + T C + TL + N ++ ++ ++ F +
Sbjct: 222 KVKARVILAGKTSNNPPFVIHDMETLCMAEKTLVAKMVANG--VEDKEAEVRFFHCCQCM 279
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + +I
Sbjct: 280 SVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKD-GMLIAYGNGF 338
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
+ R+ + + F +M+ FDFA + N L L D++I LF + ++ R GL N +E
Sbjct: 339 ITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIE 398
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+++ + ++L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 399 KLQEGIVHVLKLHLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTE 451
>RGD|3371 [details] [associations]
symbol:Pparg "peroxisome proliferator-activated receptor gamma"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001012 "RNA polymerase II regulatory region DNA binding"
evidence=IEA;ISO] [GO:0001818 "negative regulation of cytokine
production" evidence=ISO] [GO:0001890 "placenta development"
evidence=IEA;ISO] [GO:0002674 "negative regulation of acute
inflammatory response" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription factor
activity" evidence=IEA;ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=ISO;IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEP] [GO:0006631 "fatty
acid metabolic process" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=IEA;ISO] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process"
evidence=IEA;ISO] [GO:0007165 "signal transduction" evidence=ISO]
[GO:0007507 "heart development" evidence=IEP] [GO:0008144 "drug
binding" evidence=IEA;ISO] [GO:0008217 "regulation of blood pressure"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO;IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0010033 "response to organic substance" evidence=IEP] [GO:0010745
"negative regulation of macrophage derived foam cell differentiation"
evidence=ISO] [GO:0010871 "negative regulation of receptor
biosynthetic process" evidence=IEA;ISO] [GO:0010887 "negative
regulation of cholesterol storage" evidence=IEA;ISO] [GO:0010891
"negative regulation of sequestering of triglyceride"
evidence=IEA;ISO] [GO:0014070 "response to organic cyclic compound"
evidence=IEP] [GO:0015909 "long-chain fatty acid transport"
evidence=IEA;ISO] [GO:0019216 "regulation of lipid metabolic process"
evidence=IMP] [GO:0019395 "fatty acid oxidation" evidence=IMP]
[GO:0019899 "enzyme binding" evidence=IEA;ISO] [GO:0030224 "monocyte
differentiation" evidence=IEA;ISO] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
[GO:0030855 "epithelial cell differentiation" evidence=IEA;ISO]
[GO:0031000 "response to caffeine" evidence=IEP] [GO:0031100 "organ
regeneration" evidence=IEP] [GO:0032526 "response to retinoic acid"
evidence=ISO;ISS] [GO:0032869 "cellular response to insulin stimulus"
evidence=IEA;ISO] [GO:0033189 "response to vitamin A" evidence=IEP]
[GO:0033613 "activating transcription factor binding"
evidence=IEA;ISO] [GO:0033993 "response to lipid" evidence=ISO]
[GO:0035357 "peroxisome proliferator activated receptor signaling
pathway" evidence=IEA;ISO] [GO:0042493 "response to drug"
evidence=IEP] [GO:0042593 "glucose homeostasis" evidence=IEA;ISO]
[GO:0042953 "lipoprotein transport" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0043627
"response to estrogen stimulus" evidence=IEP] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO;IDA]
[GO:0045165 "cell fate commitment" evidence=IEA;ISO] [GO:0045444 "fat
cell differentiation" evidence=ISO] [GO:0045598 "regulation of fat
cell differentiation" evidence=ISO;IDA] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=ISO;ISS] [GO:0045713
"low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA;ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0046321 "positive regulation of fatty acid
oxidation" evidence=IMP] [GO:0046965 "retinoid X receptor binding"
evidence=IEA;ISO] [GO:0048469 "cell maturation" evidence=IEA;ISO]
[GO:0048662 "negative regulation of smooth muscle cell proliferation"
evidence=IEA;ISO] [GO:0048714 "positive regulation of oligodendrocyte
differentiation" evidence=IMP] [GO:0050544 "arachidonic acid binding"
evidence=ISO] [GO:0050872 "white fat cell differentiation"
evidence=ISO;ISS] [GO:0050873 "brown fat cell differentiation"
evidence=IEA;ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO] [GO:0051974 "negative regulation of telomerase
activity" evidence=IMP] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=IEA;ISO] [GO:0060336
"negative regulation of interferon-gamma-mediated signaling pathway"
evidence=IEA;ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEA;ISO] [GO:0071407 "cellular response to organic cyclic
compound" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3371
GO:GO:0005829 GO:GO:0005634 GO:GO:0008285 GO:GO:0007507 GO:GO:0051091
GO:GO:0006917 GO:GO:0030308 GO:GO:0032869 GO:GO:0042493 GO:GO:0046872
GO:GO:0008144 GO:GO:0031100 GO:GO:0009409 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0050873 GO:GO:0002674
GO:GO:0031000 GO:GO:0050872 GO:GO:0003700 GO:GO:0045600 GO:GO:0003682
GO:GO:0019395 GO:GO:0042593 GO:GO:0046321 GO:GO:0010887 GO:GO:0055098
GO:GO:0042953 GO:GO:0000122 GO:GO:0010891 GO:GO:0044212 GO:GO:0006919
GO:GO:0032526 GO:GO:0008217 GO:GO:0048714 GO:GO:0043627 GO:GO:0001890
GO:GO:0001012 GO:GO:0033189 GO:GO:0045165 GO:GO:0030374 GO:GO:0030855
GO:GO:0048469 GO:GO:0030224 GO:GO:0071285 GO:GO:0015909
eggNOG:NOG266867 GeneTree:ENSGT00700000104361 GO:GO:0060336
GO:GO:0051974 GO:GO:0010871 HOGENOM:HOG000261626 HOVERGEN:HBG106004
CTD:5468 KO:K08530 OMA:KTTDKSP GO:GO:0045713 InterPro:IPR022590
Pfam:PF12577 EMBL:AF156666 EMBL:AF156665 EMBL:AB019561 EMBL:Y12882
EMBL:AB011365 EMBL:AF246457 EMBL:AF246458 IPI:IPI00207539
IPI:IPI00231890 RefSeq:NP_001138838.1 RefSeq:NP_001138839.1
RefSeq:NP_037256.1 UniGene:Rn.23443 ProteinModelPortal:O88275
SMR:O88275 STRING:O88275 PhosphoSite:O88275
Ensembl:ENSRNOT00000012137 Ensembl:ENSRNOT00000051858 GeneID:25664
KEGG:rno:25664 UCSC:RGD:3371 InParanoid:O88275 BindingDB:O88275
ChEMBL:CHEMBL4797 NextBio:607577 Genevestigator:O88275
GermOnline:ENSRNOG00000008839 Uniprot:O88275
Length = 505
Score = 271 (100.5 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 87/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 264 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 315
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 316 RSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 373
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 374 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 433
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+++ + DLR + H + L + TE
Sbjct: 434 IEDIQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTE 488
>UNIPROTKB|I3L6W7 [details] [associations]
symbol:LOC100624946 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003076 InterPro:IPR008946
Pfam:PF00104 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01289
SMART:SM00430 GO:GO:0005634 GO:GO:0003677 GO:GO:0008144
GO:GO:0004879 GO:GO:0003707 Gene3D:1.10.565.10 SUPFAM:SSF48508
GO:GO:0046321 GO:GO:0010887 GO:GO:0000122 GO:GO:0010891
GO:GO:0042060 GO:GO:0008544 GO:GO:0070166 GO:GO:0032099
GeneTree:ENSGT00700000104361 GO:GO:0072363 GO:GO:0072369
GO:GO:0010871 GO:GO:0072366 Ensembl:ENSSSCT00000030949
Uniprot:I3L6W7
Length = 225
Score = 251 (93.4 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 57/170 (33%), Positives = 94/170 (55%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T+ ++ EFAK IPGF+ L +DQVTLLK GV+E + L+ + + ++ + R
Sbjct: 40 TVTELTEFAKSIPGFASLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGFITR 98
Query: 191 DSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248
+ + S F +M+ FDFA + N L L D+++ LF + ++ R GL N +ERM+
Sbjct: 99 EFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDLSLFVAAIICCGDRPGLLNVGHIERMQ 158
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ ++L L NHP+ + L +L+ L DLR L H++ + + TE
Sbjct: 159 EGIVHVLKLHLQTNHPDDVFLFPKLLQKLADLRQLVTEHAQLVQVIKKTE 208
>UNIPROTKB|E2RGP7 [details] [associations]
symbol:RORC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0072539 "T-helper 17 cell differentiation"
evidence=IEA] [GO:0048537 "mucosal-associated lymphoid tissue
development" evidence=IEA] [GO:0048535 "lymph node development"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468
GO:GO:0033077 GO:GO:0030522 GO:GO:0048535
GeneTree:ENSGT00700000104109 GO:GO:0048537 GO:GO:0072539
OMA:AFPPLYK EMBL:AAEX03011059 Ensembl:ENSCAFT00000020479
Uniprot:E2RGP7
Length = 518
Score = 272 (100.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 75/244 (30%), Positives = 127/244 (52%)
Query: 52 KALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNS 111
+A A L + + ++ V +++ +TC ++E +LR + P + S
Sbjct: 261 EASYASLMETEHLVQNVCKSYRETCQL---RLEDLLR---QRPNIFSREEVA-------S 307
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C
Sbjct: 308 YQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRM-C 366
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I
Sbjct: 367 RAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSSLRFSEDEIALYTALVLI 426
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
+ +R GL+ K VE+++ LE H L + H + + A+L LR+L H EKL
Sbjct: 427 NANRPGLQEKRKVEQLQHNLEQAFHHHLYRTH--RQGILAKLPPK-GKLRSLCSQHVEKL 483
Query: 292 VAFQ 295
FQ
Sbjct: 484 HTFQ 487
Score = 40 (19.1 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 101 VKFGRMSKKQRDSLHAEVQK 120
>FB|FBgn0000448 [details] [associations]
symbol:Hr46 "Hormone receptor-like in 46" species:7227
"Drosophila melanogaster" [GO:0000977 "RNA polymerase II regulatory
region sequence-specific DNA binding" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISS;NAS;IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISS;NAS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0007552 "metamorphosis" evidence=TAS] [GO:0040034
"regulation of development, heterochronic" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004887
"thyroid hormone receptor activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016319 "mushroom body development"
evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 EMBL:AE013599 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0007552 GO:GO:0016319 GO:GO:0040034
GO:GO:0000977 GO:GO:0004887 eggNOG:NOG324222 EMBL:M90806 PIR:A46146
RefSeq:NP_001246236.1 RefSeq:NP_788303.1 UniGene:Dm.5036
ProteinModelPortal:P31396 SMR:P31396 IntAct:P31396 STRING:P31396
PRIDE:P31396 EnsemblMetazoa:FBtr0088368 EnsemblMetazoa:FBtr0306345
GeneID:36073 KEGG:dme:Dmel_CG33183 CTD:36073 FlyBase:FBgn0000448
GeneTree:ENSGT00700000104109 InParanoid:P31396 KO:K14033
OrthoDB:EOG4HT77R GenomeRNAi:36073 NextBio:796700 Bgee:P31396
GermOnline:CG33183 Uniprot:P31396
Length = 487
Score = 272 (100.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 60/187 (32%), Positives = 113/187 (60%)
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
GQ+EL D +E+ + I++++EFAK IPGF L DDQ+ LLK G FE+ +VR++ + D
Sbjct: 279 GQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDL 338
Query: 176 QTNSMICLNGEVLV-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
N++ L G+V++ +++ ++S++ L+ +F A+ + L L++TE+ L+ S+V++
Sbjct: 339 SQNAV--LYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLW 396
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHPE---QMNLCAELISMLPDLRTLNQLHSE 289
P R+G+R ++R+ N + L NH + + L++ +P+ R ++ LH E
Sbjct: 397 PERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHME 456
Query: 290 KLVAFQM 296
L F++
Sbjct: 457 SLSKFKL 463
Score = 38 (18.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 5/14 (35%), Positives = 12/14 (85%)
Query: 24 VRFGRVPKREKARI 37
V+FGR+ K+++ ++
Sbjct: 121 VKFGRMSKKQREKV 134
>UNIPROTKB|F1NRA8 [details] [associations]
symbol:PPARA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR008946 Pfam:PF00104 PRINTS:PR00398
PRINTS:PR01288 SMART:SM00430 GO:GO:0005634 GO:GO:0003677
GO:GO:0004879 GO:GO:0003707 Gene3D:1.10.565.10 SUPFAM:SSF48508
GO:GO:0030522 GeneTree:ENSGT00700000104361 EMBL:AADN02006773
EMBL:AADN02006774 EMBL:AADN02006775 EMBL:AADN02006776
EMBL:AADN02006777 EMBL:AADN02006778 EMBL:AADN02006779
IPI:IPI00820492 Ensembl:ENSGALT00000037305 ArrayExpress:F1NRA8
Uniprot:F1NRA8
Length = 196
Score = 250 (93.1 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 58/170 (34%), Positives = 93/170 (54%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T+ + EFAK IPGFS L +DQVTLLK GV+E + LA + + ++ + R
Sbjct: 11 TVTKLTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKD-GMLVAYGNGFITR 69
Query: 191 DSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMR 248
+ + S F +M+ FDFA + N L L D++I LF + ++ R GL N +E+M+
Sbjct: 70 EFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLVNVGHIEKMQ 129
Query: 249 GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ ++L L NHP+ + L +L+ + DLR L H++ + + TE
Sbjct: 130 ESIVHVLKLHLQTNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTE 179
>UNIPROTKB|I3L553 [details] [associations]
symbol:RORC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072539 "T-helper 17 cell differentiation"
evidence=IEA] [GO:0048537 "mucosal-associated lymphoid tissue
development" evidence=IEA] [GO:0048535 "lymph node development"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468
GO:GO:0033077 GO:GO:0030522 GO:GO:0048535
GeneTree:ENSGT00700000104109 GO:GO:0048537 GO:GO:0072539
OMA:AFPPLYK EMBL:FP340554 Ensembl:ENSSSCT00000029985 Uniprot:I3L553
Length = 574
Score = 273 (101.2 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 77/252 (30%), Positives = 130/252 (51%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + + T +A A L + + ++ V +++ DTC ++E +LR+ S +
Sbjct: 309 SPSFRSTPEAPYASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNI 355
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ + E+ + + R + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 356 FSREEVAGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 415
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ L S+ EI
Sbjct: 416 VVLVRM-CRAYNADNHTVFFEGKYGGMELFRALGCSELISSIFDFSRSLSALRFSEDEIA 474
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
L++++V+I+ +R GL+ K VE+++ LE H L + H + + A+L LR+L
Sbjct: 475 LYTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTH--RQGILAKLPPK-GKLRSL 531
Query: 284 NQLHSEKLVAFQ 295
H EKL FQ
Sbjct: 532 CSQHVEKLQTFQ 543
Score = 40 (19.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 157 VKFGRMSKKQRDSLHAEVQK 176
>FB|FBgn0004865 [details] [associations]
symbol:Eip78C "Ecdysone-induced protein 78C" species:7227
"Drosophila melanogaster" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS;NAS] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS;NAS] [GO:0002165 "instar larval or
pupal development" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 KO:K08701 eggNOG:NOG324222
EMBL:U01087 EMBL:U01088 EMBL:X98881 EMBL:X98882 EMBL:AF238308
EMBL:AF238309 EMBL:X73045 PIR:A49070 PIR:B49070 PIR:S43435
RefSeq:NP_001246862.1 RefSeq:NP_001246863.1 RefSeq:NP_524195.2
RefSeq:NP_730609.3 ProteinModelPortal:P45447 SMR:P45447
STRING:P45447 GeneID:40345 KEGG:dme:Dmel_CG18023 CTD:40345
FlyBase:FBgn0004865 InParanoid:P45447 OrthoDB:EOG4GMSC7
GenomeRNAi:40345 NextBio:818285 Bgee:P45447 GermOnline:CG18023
Uniprot:P45447
Length = 866
Score = 274 (101.5 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 74/232 (31%), Positives = 123/232 (53%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL-Q 122
++ V +AH C++T + ++RR P ST+A L+ Q+ L Q
Sbjct: 616 VIMCVSQAHRLNCSYTEELTRELMRRPVTVPQ-NGIASTVA-------ESLEFQKIWLWQ 667
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
FS R +P ++ +VEFAKR+PGF DDQ+ L+K G FEV L +A + + T ++
Sbjct: 668 QFSARVTPGVQRIVEFAKRVPGFCDFTQDDQLILIKLGFFEVWLTHVARLINEATLTLD- 726
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
+G L R + ++++ +FA LN LSDTEIGLFS++V+++ R+GL +
Sbjct: 727 -DGAYLTRQQLEILYDSDFVNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLSEPK 785
Query: 243 LVERMRGKL-ENMLMHVLNQN--HPEQMNLCAELISMLPDLRTLNQLHSEKL 291
++ R R + E + + +L P+ + L L + +P+LR+L H L
Sbjct: 786 VIGRARELVAEALRVQILRSRAGSPQALQLMPALEAKIPELRSLGAKHFSHL 837
Score = 46 (21.3 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 24 VRFGRVPKREK 34
VR+GRVPKR +
Sbjct: 437 VRYGRVPKRSR 447
>MGI|MGI:97747 [details] [associations]
symbol:Pparg "peroxisome proliferator activated receptor
gamma" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IDA] [GO:0001012 "RNA polymerase II regulatory region
DNA binding" evidence=IDA] [GO:0001818 "negative regulation of
cytokine production" evidence=IMP] [GO:0001890 "placenta
development" evidence=IMP] [GO:0002674 "negative regulation of
acute inflammatory response" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO;IDA;IPI] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;IDA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISO;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829
"cytosol" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=ISO] [GO:0006919 "activation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=TAS]
[GO:0007165 "signal transduction" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008217 "regulation of blood pressure"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO;IMP] [GO:0010745 "negative regulation of macrophage
derived foam cell differentiation" evidence=ISO] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=ISO] [GO:0010887 "negative regulation of cholesterol
storage" evidence=ISO] [GO:0010891 "negative regulation of
sequestering of triglyceride" evidence=ISO] [GO:0015909 "long-chain
fatty acid transport" evidence=IMP] [GO:0019216 "regulation of
lipid metabolic process" evidence=ISO] [GO:0019395 "fatty acid
oxidation" evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030224 "monocyte differentiation" evidence=ISO] [GO:0030308
"negative regulation of cell growth" evidence=ISO] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISO;IDA] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=TAS] [GO:0030855 "epithelial
cell differentiation" evidence=IGI] [GO:0032526 "response to
retinoic acid" evidence=ISO;IDA] [GO:0032869 "cellular response to
insulin stimulus" evidence=ISO] [GO:0033613 "activating
transcription factor binding" evidence=ISO] [GO:0033993 "response
to lipid" evidence=IDA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=ISO] [GO:0042593
"glucose homeostasis" evidence=ISO] [GO:0042953 "lipoprotein
transport" evidence=ISO] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=ISO;IDA] [GO:0045165 "cell fate commitment"
evidence=IGI] [GO:0045444 "fat cell differentiation"
evidence=IGI;IDA] [GO:0045598 "regulation of fat cell
differentiation" evidence=ISO;IGI;IDA] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=IGI;IMP;IDA]
[GO:0045713 "low-density lipoprotein particle receptor biosynthetic
process" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0046321 "positive
regulation of fatty acid oxidation" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046965 "retinoid X receptor
binding" evidence=ISO] [GO:0048469 "cell maturation" evidence=ISO]
[GO:0048662 "negative regulation of smooth muscle cell
proliferation" evidence=ISO] [GO:0048714 "positive regulation of
oligodendrocyte differentiation" evidence=ISO] [GO:0050544
"arachidonic acid binding" evidence=IDA] [GO:0050872 "white fat
cell differentiation" evidence=IDA] [GO:0050873 "brown fat cell
differentiation" evidence=IDA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0051974 "negative regulation of telomerase
activity" evidence=ISO] [GO:0055098 "response to low-density
lipoprotein particle stimulus" evidence=ISO] [GO:0060336 "negative
regulation of interferon-gamma-mediated signaling pathway"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IDA] [GO:0071407 "cellular response to organic cyclic
compound" evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003077
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:97747 GO:GO:0005829 GO:GO:0008285 GO:GO:0005654
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0006954 GO:GO:0045944 GO:GO:0050873 GO:GO:0050872
GO:GO:0045600 GO:GO:0003682 GO:GO:0000122 Reactome:REACT_127416
GO:GO:0032526 GO:GO:0001890 GO:GO:0001012 GO:GO:0050544
GO:GO:0071407 GO:GO:0045165 GO:GO:0030374 GO:GO:0030855
GO:GO:0071285 Reactome:REACT_27166 GO:GO:0015909 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0001818 HOGENOM:HOG000261626
HOVERGEN:HBG106004 CTD:5468 KO:K08530 InterPro:IPR022590
Pfam:PF12577 OrthoDB:EOG41ZF9W EMBL:U09138 EMBL:U01664 EMBL:U01841
EMBL:U10374 IPI:IPI00125193 IPI:IPI00266075 PIR:A54101
RefSeq:NP_001120802.1 RefSeq:NP_035276.2 UniGene:Mm.3020
ProteinModelPortal:P37238 SMR:P37238 IntAct:P37238 STRING:P37238
PhosphoSite:P37238 PRIDE:P37238 Ensembl:ENSMUST00000171644
GeneID:19016 KEGG:mmu:19016 UCSC:uc012eqj.1 InParanoid:P37238
BindingDB:P37238 ChEMBL:CHEMBL2459 NextBio:295444 Bgee:P37238
CleanEx:MM_PPARG Genevestigator:P37238
GermOnline:ENSMUSG00000000440 Uniprot:P37238
Length = 505
Score = 268 (99.4 bits), Expect = 2.5e-20, P = 2.5e-20
Identities = 86/295 (29%), Positives = 142/295 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQST---NTKCTE-KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA + N + + +ALA L D + T +A
Sbjct: 205 HNA-IRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARA 263
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH--PLQGQQE-----LLQDFSE 126
T DK P + Y + H PLQ Q + + Q
Sbjct: 264 ILTGKTTDK-SPFV-------IYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQF 315
Query: 127 RFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGE 186
R ++++ E+AK IPGF L +DQVTLLK GV E++ LA + + + ++ G+
Sbjct: 316 RSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQ 373
Query: 187 -VLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + + F M+ F+FA + N L L D+++ +F +++++S R GL N +
Sbjct: 374 GFMTREFLKNLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKP 433
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+E ++ L L L NHPE L A+++ + DLR + H + L + TE
Sbjct: 434 IEDIQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTE 488
>UNIPROTKB|P51449 [details] [associations]
symbol:RORC "Nuclear receptor ROR-gamma" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0033077 "T
cell differentiation in thymus" evidence=IEA] [GO:0048535 "lymph
node development" evidence=IEA] [GO:0048537 "mucosal-associated
lymphoid tissue development" evidence=IEA] [GO:0072539 "T-helper 17
cell differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006468 GO:GO:0033077 GO:GO:0006367
GO:GO:0048535 EMBL:AL589765 PDB:3KYT PDB:3L0J PDB:3L0L PDBsum:3KYT
PDBsum:3L0J PDBsum:3L0L HOVERGEN:HBG106848 EMBL:U16997
EMBL:AL834219 EMBL:BC031554 IPI:IPI00216710 IPI:IPI00418178
PIR:JC2494 RefSeq:NP_001001523.1 RefSeq:NP_005051.2
UniGene:Hs.256022 UniGene:Hs.607993 PDB:3B0W PDBsum:3B0W
ProteinModelPortal:P51449 SMR:P51449 IntAct:P51449 STRING:P51449
PhosphoSite:P51449 DMDM:49066040 PRIDE:P51449 DNASU:6097
Ensembl:ENST00000318247 Ensembl:ENST00000356728 GeneID:6097
KEGG:hsa:6097 UCSC:uc001ezh.3 CTD:6097 GeneCards:GC01M151778
HGNC:HGNC:10260 MIM:602943 neXtProt:NX_P51449 PharmGKB:PA34632
eggNOG:NOG317095 KO:K08534 ChEMBL:CHEMBL1741186
EvolutionaryTrace:P51449 GenomeRNAi:6097 NextBio:23717
ArrayExpress:P51449 Bgee:P51449 CleanEx:HS_RORC
Genevestigator:P51449 GermOnline:ENSG00000143365 GO:GO:0048537
GO:GO:0072539 Uniprot:P51449
Length = 518
Score = 270 (100.1 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 75/252 (29%), Positives = 131/252 (51%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + + T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 253 SPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNI 299
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 300 FSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 359
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI
Sbjct: 360 VVLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIA 418
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
L++++V+I+ R GL+ K VE+++ LE H L + H + ++ A+L LR+L
Sbjct: 419 LYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTH--RQSILAKLPPK-GKLRSL 475
Query: 284 NQLHSEKLVAFQ 295
H E+L FQ
Sbjct: 476 CSQHVERLQIFQ 487
Score = 40 (19.1 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 101 VKFGRMSKKQRDSLHAEVQK 120
>UNIPROTKB|F1NQH5 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IEA] [GO:0032331 "negative
regulation of chondrocyte differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048048
"embryonic eye morphogenesis" evidence=IEA] [GO:0048566 "embryonic
digestive tract development" evidence=IEA] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IEA] [GO:0061037
"negative regulation of cartilage development" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0008285 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0043065 GO:GO:0032331 GO:GO:0003708 GO:GO:0061037
GeneTree:ENSGT00680000099662 EMBL:AADN02001127 EMBL:AADN02001120
EMBL:AADN02001121 EMBL:AADN02001122 EMBL:AADN02001123
EMBL:AADN02001124 EMBL:AADN02001125 EMBL:AADN02001126
IPI:IPI01017311 Ensembl:ENSGALT00000018429
Ensembl:ENSGALT00000037746 Uniprot:F1NQH5
Length = 359
Score = 257 (95.5 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 67/254 (26%), Positives = 125/254 (49%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTA--DKIEPMLRRAREHPTYTACPST 102
KC E ++ E D ++ + + TA D + +R+A + + C
Sbjct: 87 KCFEVGMSKESVRNDRNKKKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 146
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
+ H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 147 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 206
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 207 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 266
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L V++++ L L + + P + ++ +++ + DLR+
Sbjct: 267 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 326
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 327 ISAKGAERVITLKM 340
>ZFIN|ZDB-GENE-041210-169 [details] [associations]
symbol:pparaa "peroxisome proliferator-activated
receptor alpha a" species:7955 "Danio rerio" [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-041210-169 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 eggNOG:NOG266867 HOGENOM:HOG000261626
HOVERGEN:HBG106004 EMBL:DQ017612 IPI:IPI00934276 UniGene:Dr.88405
InParanoid:Q1L694 Uniprot:Q1L694
Length = 473
Score = 266 (98.7 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 90/295 (30%), Positives = 140/295 (47%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNT--KCTE---KALAAELDDEQ----RMLSTVVR 70
HNA +RFGR+P+ EK R+ A S KC + ++LA ++ + M R
Sbjct: 168 HNA-IRFGRIPQSEKQRLKAEQDVSGKEEHKCQQPDMRSLARQMHEAYLKHFHMNKAKAR 226
Query: 71 AHLDTCAFTAD-KIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ-EL-LQDFSER 127
L T I M +H L + + LQ ++ E L F +
Sbjct: 227 VFLTGKTSTPPFVIHDM--DTLQHAEKKLVTQLLGNVASGDISTLQEREVEARLFLFCQY 284
Query: 128 FS-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA-CMFDSQTNSMICLNG 185
S T+ ++ E+AK +PGF+ L +DQVTLLK GV+E L LA CM ++ ++ G
Sbjct: 285 ASVATVTELTEYAKAVPGFADLDLNDQVTLLKYGVYEALFTLLASCM--NKDGLLVAQGG 342
Query: 186 EVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+ R+ + S F +M+ F FA + N L L D+++ LF + ++ R GL N
Sbjct: 343 GFITREFLKSLRKPFSDMMEPKFQFAMKFNALELDDSDLALFVAAIICCGDRPGLSNVPQ 402
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ER++ + + L L NHP+ L +L+ L DLR L H+E + TE
Sbjct: 403 IERIQESVIHSLRLHLTSNHPDNSLLFPKLLQKLADLRQLVTEHAELVQEINKTE 457
>ZFIN|ZDB-GENE-990415-213 [details] [associations]
symbol:pparg "peroxisome proliferator activated
receptor gamma" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003077 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01291 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-213 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522 eggNOG:NOG266867
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5468 KO:K08530
InterPro:IPR022590 Pfam:PF12577 OrthoDB:EOG41ZF9W EMBL:DQ839547
IPI:IPI00614364 RefSeq:NP_571542.1 UniGene:Dr.159153
ProteinModelPortal:A6XMH6 SMR:A6XMH6 STRING:A6XMH6 GeneID:557037
KEGG:dre:557037 NextBio:20881787 Uniprot:A6XMH6
Length = 527
Score = 267 (99.0 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 82/292 (28%), Positives = 143/292 (48%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTE----KALAAELDDE--QRMLSTVVRAHL 73
HNA +RFGR+P+ EK ++LA N E +ALA L + + T +A
Sbjct: 221 HNA-IRFGRMPQAEKEKLLAEFSSDVNHMHPESADLRALARHLYESYLKYFPLTKAKARA 279
Query: 74 DTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQG---QQEL--LQDFSERF 128
T+D ++ + + PL+ + G + EL + R
Sbjct: 280 ILSGKTSDNAPFVIHDMKSLVEGEQMINCRYMPLHEHRRSDLGIMHEVELRFFHSYQSRS 339
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
+ I +V EFAK IPGF L +DQVTLLK GV EV+++ ++ + + ++I +
Sbjct: 340 AEAISEVTEFAKSIPGFINLDLNDQVTLLKYGVIEVMIIMISPLMNKD-GTLISYGQIFM 398
Query: 189 VRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F +M+ F+F+ + N L L D ++ LF +++++S R GL + + +E
Sbjct: 399 TREFLKSLRKPFCEMMEPKFEFSIKFNMLELDDCDMALFLAVIILSGDRPGLLDVKPIED 458
Query: 247 MRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + + L L NHP+ + L A+++ + DLR L H + + + TE
Sbjct: 459 LQETVLHSLELQLKINHPDSLQLFAKVLQKMTDLRQLVTDHVQLIQMMKETE 510
>UNIPROTKB|H7BYJ4 [details] [associations]
symbol:RORC "Nuclear receptor ROR-gamma" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0030522 EMBL:AL589765 HGNC:HGNC:10260
ProteinModelPortal:H7BYJ4 SMR:H7BYJ4 Ensembl:ENST00000392697
OMA:AFPPLYK Bgee:H7BYJ4 Uniprot:H7BYJ4
Length = 572
Score = 270 (100.1 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 75/252 (29%), Positives = 131/252 (51%)
Query: 44 STNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTL 103
S + + T +A A L + + ++ +V +++ +TC ++E +LR+ S +
Sbjct: 307 SPSFRSTPEAPYASLTEIEHLVQSVCKSYRETCQL---RLEDLLRQR----------SNI 353
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ + E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG E
Sbjct: 354 FSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAME 413
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
V+LVR+ C + N + G+ + + L+ S+FDF+ L+ LH S+ EI
Sbjct: 414 VVLVRM-CRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIA 472
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
L++++V+I+ R GL+ K VE+++ LE H L + H + ++ A+L LR+L
Sbjct: 473 LYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTH--RQSILAKLPPK-GKLRSL 529
Query: 284 NQLHSEKLVAFQ 295
H E+L FQ
Sbjct: 530 CSQHVERLQIFQ 541
Score = 40 (19.1 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 155 VKFGRMSKKQRDSLHAEVQK 174
>UNIPROTKB|Q99ND3 [details] [associations]
symbol:Ppard "Protein Ppard" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006635 "fatty acid beta-oxidation" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0008366 "axon ensheathment" evidence=IEA]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0031589 "cell-substrate adhesion" evidence=IEA] [GO:0042060
"wound healing" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043616 "keratinocyte proliferation" evidence=IEA] [GO:0045598
"regulation of fat cell differentiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0051546 "keratinocyte migration" evidence=IEA]
[GO:0060612 "adipose tissue development" evidence=IEA] [GO:0070539
"linoleic acid binding" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003075 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3370 GO:GO:0005634 GO:GO:0006915
GO:GO:0045893 GO:GO:0043616 GO:GO:0030154 GO:GO:0046872
GO:GO:0008144 GO:GO:0008284 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0014068 GO:GO:0060612 GO:GO:0015908
GO:GO:0006635 GO:GO:0000122 GO:GO:0001890 GO:GO:0042060
GO:GO:0042640 GO:GO:0045598 GO:GO:0050680 GO:GO:0031589
EMBL:CH473988 GO:GO:0008366 GeneTree:ENSGT00700000104361
GO:GO:0070539 GO:GO:0051546 HOVERGEN:HBG106004 CTD:5467 KO:K04504
OMA:SSLFLND EMBL:AJ306400 IPI:IPI00325169 RefSeq:NP_037273.2
UniGene:Rn.96181 HSSP:Q03181 SMR:Q99ND3 STRING:Q99ND3
Ensembl:ENSRNOT00000042539 GeneID:25682 KEGG:rno:25682
InParanoid:Q99ND3 NextBio:607651 Genevestigator:Q99ND3
Uniprot:Q99ND3
Length = 440
Score = 262 (97.3 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 83/293 (28%), Positives = 133/293 (45%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S C + A+L + + A+L T
Sbjct: 139 HNA-IRFGRMPEAEKRKLVAGLTASEG--CQQNPQLADL---KAFSKHIYNAYLKNFNMT 192
Query: 80 ADKIEPMLRRAREH--P-------TYTACPSTLACPLNPNSHPLQGQ--QELLQDFSERF 128
K +L H P T L N P + +
Sbjct: 193 KKKARSILTGKSSHNAPFIIHDIETLWQAEKGLVWKQLVNGPPPYNEISVHVFYRCQSTT 252
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 253 VETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 310
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V + + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 311 VTHEFLRSIRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPQVE 370
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 371 AIQDTILQALEFHLQVNHPDSQYLFPKLLQKMADLRQLVTEHAQMMQWLKKTE 423
>RGD|3370 [details] [associations]
symbol:Ppard "peroxisome proliferator-activated receptor delta"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001890 "placenta development" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;TAS] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISO;TAS] [GO:0005504 "fatty
acid binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006029 "proteoglycan metabolic process" evidence=IDA]
[GO:0006629 "lipid metabolic process" evidence=ISO;IDA] [GO:0006776
"vitamin A metabolic process" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0007507 "heart development" evidence=IEP]
[GO:0007566 "embryo implantation" evidence=IEP] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation" evidence=ISO]
[GO:0008289 "lipid binding" evidence=ISO] [GO:0008366 "axon
ensheathment" evidence=ISO] [GO:0008654 "phospholipid biosynthetic
process" evidence=IDA] [GO:0009299 "mRNA transcription" evidence=IDA]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0010033
"response to organic substance" evidence=IEP] [GO:0014068 "positive
regulation of phosphatidylinositol 3-kinase cascade" evidence=ISO]
[GO:0014823 "response to activity" evidence=IEP] [GO:0014912
"negative regulation of smooth muscle cell migration" evidence=IDA]
[GO:0019395 "fatty acid oxidation" evidence=IDA] [GO:0030154 "cell
differentiation" evidence=ISO] [GO:0030308 "negative regulation of
cell growth" evidence=IDA] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO] [GO:0031589 "cell-substrate
adhesion" evidence=ISO] [GO:0032024 "positive regulation of insulin
secretion" evidence=IDA] [GO:0032966 "negative regulation of collagen
biosynthetic process" evidence=IMP] [GO:0033189 "response to vitamin
A" evidence=IEP] [GO:0042060 "wound healing" evidence=ISO]
[GO:0042127 "regulation of cell proliferation" evidence=ISO]
[GO:0042640 "anagen" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=IDA] [GO:0043616 "keratinocyte
proliferation" evidence=ISO] [GO:0045598 "regulation of fat cell
differentiation" evidence=ISO] [GO:0045684 "positive regulation of
epidermis development" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045909 "positive
regulation of vasodilation" evidence=IDA] [GO:0046697
"decidualization" evidence=IEP] [GO:0048662 "negative regulation of
smooth muscle cell proliferation" evidence=IDA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=ISO]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IDA] [GO:0051059 "NF-kappaB binding" evidence=IPI]
[GO:0051546 "keratinocyte migration" evidence=ISO] [GO:0060612
"adipose tissue development" evidence=ISO] [GO:0070539 "linoleic acid
binding" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3370
GO:GO:0005634 GO:GO:0043066 GO:GO:0007507 GO:GO:0030308 GO:GO:0014823
GO:GO:0046872 GO:GO:0050728 GO:GO:0009749 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0032966 GO:GO:0045909 GO:GO:0032024
GO:GO:0019395 GO:GO:0008654 GO:GO:0003713 GO:GO:0005504 GO:GO:0014912
GO:GO:0048662 GO:GO:0033189 GO:GO:0006776 GO:GO:0006029 GO:GO:0046697
GO:GO:0007566 GO:GO:0009299 HOVERGEN:HBG106004 IPI:IPI00325169
UniGene:Rn.96181 HSSP:Q03181 EMBL:U75918 ProteinModelPortal:Q9QWI0
SMR:Q9QWI0 STRING:Q9QWI0 UCSC:RGD:3370 InParanoid:Q9QWI0
Genevestigator:Q9QWI0 GO:GO:0045684 Uniprot:Q9QWI0
Length = 440
Score = 234 (87.4 bits), Expect = 6.8e-20, Sum P(2) = 6.8e-20
Identities = 56/171 (32%), Positives = 92/171 (53%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV- 189
T+R++ EFAK IP FS L +DQVTLLK GV + + LA + + + ++ NG V
Sbjct: 255 TVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHQAIFAMLASIVNK--DGLLVANGSGFVT 312
Query: 190 RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM 247
+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE +
Sbjct: 313 HEFLRSIRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPQVEAI 372
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 373 QDTILQALEFHLQVNHPDSQYLFPKLLQKMADLRQLVTEHAQMMQWLKKTE 423
Score = 72 (30.4 bits), Expect = 6.8e-20, Sum P(2) = 6.8e-20
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S C + A+L + + A+L T
Sbjct: 139 HNA-IRFGRMPEAEKRKLVAGLTASEG--CQQNPQLADL---KAFSKHIYNAYLKNFNMT 192
Query: 80 ADKIEPMLRRAREH 93
K +L H
Sbjct: 193 KKKARSILTGKSSH 206
>UNIPROTKB|F1RXC3 [details] [associations]
symbol:NR1D1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0034144 "negative regulation of
toll-like receptor 4 signaling pathway" evidence=IEA] [GO:0010871
"negative regulation of receptor biosynthetic process"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001723 InterPro:IPR008946 Pfam:PF00104 PRINTS:PR00398
SMART:SM00430 GO:GO:0007623 GO:GO:0003707 Gene3D:1.10.565.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0044212 GO:GO:0000790
GeneTree:ENSGT00700000104109 GO:GO:0034144 GO:GO:0010871
EMBL:FP015991 Ensembl:ENSSSCT00000019033 OMA:PPLERDS Uniprot:F1RXC3
Length = 137
Score = 244 (91.0 bits), Expect = 7.1e-20, P = 7.1e-20
Identities = 48/134 (35%), Positives = 88/134 (65%)
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
+VL+VR A +F+ + +++ L+ + + L+++MFDF+E+LN L L++ E+
Sbjct: 1 QVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEEEL 60
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GLF+++V++S RSG+ N VE+++ L L ++ +N P + + +L+ LPDLRT
Sbjct: 61 GLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRT 120
Query: 283 LNQLHSEKLVAFQM 296
LN +HSEKL++F++
Sbjct: 121 LNNMHSEKLLSFRV 134
>UNIPROTKB|D6RBI3 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7 HGNC:HGNC:9865 EMBL:AC093416
EMBL:AC092422 EMBL:AC098477 EMBL:AC133141 EMBL:AC133797
IPI:IPI00967715 ProteinModelPortal:D6RBI3 SMR:D6RBI3
Ensembl:ENST00000383772 ArrayExpress:D6RBI3 Bgee:D6RBI3
Uniprot:D6RBI3
Length = 402
Score = 259 (96.2 bits), Expect = 8.3e-20, P = 8.3e-20
Identities = 68/254 (26%), Positives = 127/254 (50%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTA--DKIEPMLRRAREHPTYTACPST 102
KC E ++ E D ++ T + ++ TA D + +R+A + + C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
+ H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L V++++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>MGI|MGI:101884 [details] [associations]
symbol:Ppard "peroxisome proliferator activator receptor
delta" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0001890 "placenta development" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO;TAS] [GO:0005504 "fatty acid binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006029 "proteoglycan
metabolic process" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006629 "lipid
metabolic process" evidence=ISO;IMP] [GO:0006776 "vitamin A
metabolic process" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=ISO] [GO:0007566 "embryo implantation" evidence=TAS]
[GO:0008047 "enzyme activator activity" evidence=TAS] [GO:0008144
"drug binding" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0008289 "lipid binding" evidence=ISO] [GO:0008366
"axon ensheathment" evidence=IMP] [GO:0008544 "epidermis
development" evidence=TAS] [GO:0008654 "phospholipid biosynthetic
process" evidence=ISO] [GO:0009299 "mRNA transcription"
evidence=ISO] [GO:0009987 "cellular process" evidence=TAS]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IDA] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=ISO] [GO:0016501 "prostacyclin
receptor activity" evidence=TAS] [GO:0019395 "fatty acid oxidation"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IMP;IDA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISO;TAS] [GO:0031589 "cell-substrate adhesion"
evidence=IMP] [GO:0032024 "positive regulation of insulin
secretion" evidence=ISO] [GO:0032966 "negative regulation of
collagen biosynthetic process" evidence=ISO] [GO:0042060 "wound
healing" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IGI] [GO:0042640 "anagen" evidence=IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043616 "keratinocyte proliferation"
evidence=IMP] [GO:0045598 "regulation of fat cell differentiation"
evidence=IMP] [GO:0045684 "positive regulation of epidermis
development" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045909 "positive
regulation of vasodilation" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=TAS] [GO:0046982 "protein heterodimerization activity"
evidence=TAS] [GO:0048662 "negative regulation of smooth muscle
cell proliferation" evidence=ISO] [GO:0050680 "negative regulation
of epithelial cell proliferation" evidence=IGI] [GO:0050728
"negative regulation of inflammatory response" evidence=ISO]
[GO:0050796 "regulation of insulin secretion" evidence=NAS]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0051546
"keratinocyte migration" evidence=IMP] [GO:0060612 "adipose tissue
development" evidence=IMP] [GO:0070539 "linoleic acid binding"
evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:101884 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0043616 GO:GO:0030154 GO:GO:0046872 GO:GO:0003677
GO:GO:0008144 GO:GO:0008284 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0014068 GO:GO:0060612 GO:GO:0015908
GO:GO:0050796 GO:GO:0006635 GO:GO:0000122 GO:GO:0046982
GO:GO:0001890 GO:GO:0042060 GO:GO:0042640 GO:GO:0008047
GO:GO:0045598 GO:GO:0050680 GO:GO:0031589 GO:GO:0007566
GO:GO:0046965 GO:GO:0008366 eggNOG:NOG266867 GO:GO:0070539
GO:GO:0051546 HOGENOM:HOG000261626 HOVERGEN:HBG106004
OrthoDB:EOG4FFD1Q CTD:5467 KO:K04504 OMA:SSLFLND EMBL:L28116
EMBL:U10375 EMBL:BC070398 EMBL:U01665 IPI:IPI00271799 PIR:I55442
RefSeq:NP_035275.1 UniGene:Mm.328914 ProteinModelPortal:P35396
SMR:P35396 DIP:DIP-29851N IntAct:P35396 STRING:P35396
PhosphoSite:P35396 PRIDE:P35396 Ensembl:ENSMUST00000002320
GeneID:19015 KEGG:mmu:19015 InParanoid:P35396 BindingDB:P35396
ChEMBL:CHEMBL2458 NextBio:295440 Bgee:P35396 CleanEx:MM_PPARD
Genevestigator:P35396 GermOnline:ENSMUSG00000002250 GO:GO:0016501
Uniprot:P35396
Length = 440
Score = 259 (96.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 83/293 (28%), Positives = 132/293 (45%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S C A+L + + A+L T
Sbjct: 139 HNA-IRFGRMPEAEKRKLVAGLTASEG--CQHNPQLADL---KAFSKHIYNAYLKNFNMT 192
Query: 80 ADKIEPMLRRAREH--P-------TYTACPSTLACPLNPNSHPLQGQ--QELLQDFSERF 128
K +L H P T L N P + +
Sbjct: 193 KKKARSILTGKSSHNAPFVIHDIETLWQAEKGLVWKQLVNGLPPYNEISVHVFYRCQSTT 252
Query: 129 SPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 253 VETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 310
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V + + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 311 VTHEFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPQVE 370
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 371 AIQDTILRALEFHLQVNHPDSQYLFPKLLQKMADLRQLVTEHAQMMQWLKKTE 423
>UNIPROTKB|P10826 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0021756 "striatum development"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IEA] [GO:0032331
"negative regulation of chondrocyte differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048048
"embryonic eye morphogenesis" evidence=IEA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IEA]
[GO:0061037 "negative regulation of cartilage development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0048566
"embryonic digestive tract development" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0008285 GO:GO:0005654 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0000122 GO:GO:0043065
GO:GO:0048566 GO:GO:0035264 GO:GO:0035116
Pathway_Interaction_DB:retinoic_acid_pathway GO:GO:0048048
DrugBank:DB00459 GO:GO:0006367 GO:GO:0001657 GO:GO:0021756
GO:GO:0032331 GO:GO:0003417 HOVERGEN:HBG005606 GO:GO:0003708
GO:GO:0061037 GO:GO:0055012 PDB:4DM6 PDB:4DM8 PDBsum:4DM6
PDBsum:4DM8 DrugBank:DB00523 DrugBank:DB00926 eggNOG:NOG297448
HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7 DrugBank:DB00210
DrugBank:DB04942 DrugBank:DB00799 CTD:5915 KO:K08528 EMBL:X07282
EMBL:Y00291 EMBL:AF157483 EMBL:BC060794 EMBL:X56849 EMBL:X77664
EMBL:X04014 EMBL:M57445 IPI:IPI00022989 IPI:IPI00219014
IPI:IPI00745428 PIR:S02827 PIR:S49021 RefSeq:NP_000956.2
RefSeq:NP_057236.1 UniGene:Hs.654490 UniGene:Hs.733004 PDB:1HRA
PDB:1XAP PDBsum:1HRA PDBsum:1XAP ProteinModelPortal:P10826
SMR:P10826 IntAct:P10826 MINT:MINT-1180428 STRING:P10826
DMDM:17380507 PRIDE:P10826 DNASU:5915 Ensembl:ENST00000330688
Ensembl:ENST00000404969 Ensembl:ENST00000437042
Ensembl:ENST00000458646 GeneID:5915 KEGG:hsa:5915 UCSC:uc003cdi.2
GeneCards:GC03P025194 HGNC:HGNC:9865 HPA:CAB002617 HPA:HPA004174
MIM:180220 neXtProt:NX_P10826 PharmGKB:PA34226 OMA:QEVFVCI
PhylomeDB:P10826 BindingDB:P10826 ChEMBL:CHEMBL2008
EvolutionaryTrace:P10826 GenomeRNAi:5915 NextBio:23024
ArrayExpress:P10826 Bgee:P10826 CleanEx:HS_RARB
Genevestigator:P10826 GermOnline:ENSG00000077092 Uniprot:P10826
Length = 455
Score = 259 (96.2 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 68/254 (26%), Positives = 127/254 (50%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTA--DKIEPMLRRAREHPTYTACPST 102
KC E ++ E D ++ T + ++ TA D + +R+A + + C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
+ H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L V++++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|F1N9Q8 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 OMA:QEVFVCI EMBL:AADN02001127
EMBL:AADN02001120 EMBL:AADN02001121 EMBL:AADN02001122
EMBL:AADN02001123 EMBL:AADN02001124 EMBL:AADN02001125
EMBL:AADN02001126 IPI:IPI00821263 ProteinModelPortal:F1N9Q8
Ensembl:ENSGALT00000029066 ArrayExpress:F1N9Q8 Uniprot:F1N9Q8
Length = 415
Score = 257 (95.5 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 67/254 (26%), Positives = 125/254 (49%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTA--DKIEPMLRRAREHPTYTACPST 102
KC E ++ E D ++ + + TA D + +R+A + + C
Sbjct: 141 KCFEVGMSKESVRNDRNKKKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 200
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
+ H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 201 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 260
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 261 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 320
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L V++++ L L + + P + ++ +++ + DLR+
Sbjct: 321 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 380
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 381 ISAKGAERVITLKM 394
>UNIPROTKB|P22448 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001657 "ureteric bud development" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IEA] [GO:0032331 "negative
regulation of chondrocyte differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048048
"embryonic eye morphogenesis" evidence=IEA] [GO:0048566 "embryonic
digestive tract development" evidence=IEA] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IEA] [GO:0061037
"negative regulation of cartilage development" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IDA] [GO:0071729 "beak
morphogenesis" evidence=IDA] [GO:0032526 "response to retinoic
acid" evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0008285
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0043065 GO:GO:0032526 GO:GO:0035108
GO:GO:0032331 GO:GO:0071729 HOVERGEN:HBG005606 GO:GO:0003708
GO:GO:0061037 eggNOG:NOG297448 GeneTree:ENSGT00680000099662
HOGENOM:HOG000010312 EMBL:X56674 EMBL:X57341 EMBL:X57340
EMBL:X57339 EMBL:S75943 EMBL:X59473 EMBL:S63196 IPI:IPI00580878
IPI:IPI00589689 PIR:A43786 PIR:I51272 PIR:S13512 RefSeq:NP_990657.1
UniGene:Gga.2668 UniGene:Gga.51498 ProteinModelPortal:P22448
SMR:P22448 STRING:P22448 Ensembl:ENSGALT00000037748 GeneID:396266
KEGG:gga:396266 CTD:5915 InParanoid:P22448 KO:K08528
NextBio:20816318 ArrayExpress:P22448 Uniprot:P22448
Length = 455
Score = 257 (95.5 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 67/254 (26%), Positives = 125/254 (49%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTA--DKIEPMLRRAREHPTYTACPST 102
KC E ++ E D ++ + + TA D + +R+A + + C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
+ H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L V++++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|Q90966 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032526 "response to
retinoic acid" evidence=IDA] [GO:0021575 "hindbrain morphogenesis"
evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0032526 GO:GO:0021575
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448 KO:K08527
CTD:5914 EMBL:X73972 EMBL:X78335 IPI:IPI00603905 IPI:IPI00604270
PIR:I50674 RefSeq:NP_989867.1 UniGene:Gga.112
ProteinModelPortal:Q90966 SMR:Q90966 STRING:Q90966 GeneID:395213
KEGG:gga:395213 NextBio:20815302 Uniprot:Q90966
Length = 460
Score = 257 (95.5 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 66/254 (25%), Positives = 126/254 (49%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + V + ++E ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKDVPKTECSESYIVTPEVEELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V++++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|F1NHW8 [details] [associations]
symbol:PPARD "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0006635 "fatty acid beta-oxidation" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008366 "axon ensheathment"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0015908
"fatty acid transport" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0031589 "cell-substrate
adhesion" evidence=IEA] [GO:0042060 "wound healing" evidence=IEA]
[GO:0042640 "anagen" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=IEA]
[GO:0051546 "keratinocyte migration" evidence=IEA] [GO:0060612
"adipose tissue development" evidence=IEA] [GO:0070539 "linoleic
acid binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0043616
GO:GO:0030154 GO:GO:0046872 GO:GO:0008144 GO:GO:0008284
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0015908 GO:GO:0006635 GO:GO:0000122 GO:GO:0042060
GO:GO:0045598 GO:GO:0050680 GO:GO:0031589
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
OMA:SSLFLND EMBL:AC140943 IPI:IPI00588578
Ensembl:ENSGALT00000004076 Uniprot:F1NHW8
Length = 443
Score = 256 (95.2 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 84/294 (28%), Positives = 137/294 (46%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + S C +A D + + A+L T
Sbjct: 141 HNA-IRFGRMPEAEKRKLVAGLTAS-EISCQNPQVA----DLKAFSKHIYNAYLKNFNMT 194
Query: 80 ADKIEPMLR-RAREHP---------TYTACPSTLACPLNPNSHPLQGQQELLQDFSERFS 129
K +L +A P T L N P + + + + +
Sbjct: 195 KKKARGILTGKASSTPQPFVIHDMDTLWQAEKGLVWKQLVNGIPPYKEIGVHVFYRCQCT 254
Query: 130 P--TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+R++ EFAK IP F L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 255 TVETVRELTEFAKSIPSFIGLYLNDQVTLLKYGVHEAIFAMLASIMNK--DGLLVANGNG 312
Query: 188 LV-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
V R+ + S F +M+ F+FA + N L L D+++ LF + +++ R GL N + V
Sbjct: 313 FVTREFLRSLRKPFNEIMEPKFEFAVKFNALELDDSDLSLFVAAIILCGDRPGLMNVKQV 372
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
E ++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 373 EEIQDNILRALEFHLQSNHPDAQYLFPKLLQKMADLRQLVTEHAQLVQKIKKTE 426
>UNIPROTKB|Q03181 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0031589 "cell-substrate
adhesion" evidence=IEA] [GO:0042060 "wound healing" evidence=IEA]
[GO:0042640 "anagen" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0051546
"keratinocyte migration" evidence=IEA] [GO:0060612 "adipose tissue
development" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0008144 "drug binding" evidence=IDA] [GO:0070539
"linoleic acid binding" evidence=IDA] [GO:0005504 "fatty acid
binding" evidence=NAS] [GO:0006635 "fatty acid beta-oxidation"
evidence=ISS;TAS] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=ISS;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0046697
"decidualization" evidence=TAS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006629 "lipid metabolic process" evidence=ISS]
[GO:0008366 "axon ensheathment" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008203 "cholesterol metabolic process" evidence=TAS]
[GO:0009062 "fatty acid catabolic process" evidence=TAS]
[GO:0015908 "fatty acid transport" evidence=ISS] [GO:0006006
"glucose metabolic process" evidence=NAS] [GO:0015758 "glucose
transport" evidence=NAS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045600 "positive
regulation of fat cell differentiation" evidence=NAS] [GO:0007566
"embryo implantation" evidence=TAS] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006091 "generation of precursor metabolites and
energy" evidence=TAS] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003075 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0006915
GO:GO:0045893 GO:GO:0043616 GO:GO:0005654 GO:GO:0030154
EMBL:CH471081 Pathway_Interaction_DB:ps1pathway GO:GO:0046872
GO:GO:0003677 GO:GO:0008144 GO:GO:0008284 GO:GO:0008283
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0008203
GO:GO:0014068 GO:GO:0015758 GO:GO:0060612 GO:GO:0045600
GO:GO:0006006 GO:GO:0006091 GO:GO:0015908
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0006635 GO:GO:0000122
DrugBank:DB00159 GO:GO:0042060 GO:GO:0042640 DrugBank:DB00605
GO:GO:0050680 GO:GO:0006367 GO:GO:0031589 GO:GO:0046697
GO:GO:0007566 DrugBank:DB00374 GO:GO:0008366 eggNOG:NOG266867
GO:GO:0070539 EMBL:AL022721 GO:GO:0051546 HOGENOM:HOG000261626
HOVERGEN:HBG106004 OrthoDB:EOG4FFD1Q CTD:5467 KO:K04504 OMA:SSLFLND
EMBL:L07592 EMBL:AF246303 EMBL:AF246299 EMBL:AF246300 EMBL:AF246301
EMBL:AF246302 EMBL:AB307691 EMBL:AY919140 EMBL:AK291661
EMBL:AK296425 EMBL:AK122614 EMBL:AY442342 EMBL:BC002715
EMBL:BC007578 EMBL:AB099507 IPI:IPI00009330 IPI:IPI00219761
PIR:A45360 RefSeq:NP_001165289.1 RefSeq:NP_001165290.1
RefSeq:NP_001165291.1 RefSeq:NP_006229.1 RefSeq:NP_803184.1
UniGene:Hs.696032 PDB:1GWX PDB:1Y0S PDB:2AWH PDB:2B50 PDB:2BAW
PDB:2ENV PDB:2GWX PDB:2J14 PDB:2Q5G PDB:2XYJ PDB:2XYW PDB:2XYX
PDB:2ZNP PDB:2ZNQ PDB:3D5F PDB:3DY6 PDB:3ET2 PDB:3GWX PDB:3GZ9
PDB:3OZ0 PDB:3PEQ PDB:3SP9 PDB:3TKM PDBsum:1GWX PDBsum:1Y0S
PDBsum:2AWH PDBsum:2B50 PDBsum:2BAW PDBsum:2ENV PDBsum:2GWX
PDBsum:2J14 PDBsum:2Q5G PDBsum:2XYJ PDBsum:2XYW PDBsum:2XYX
PDBsum:2ZNP PDBsum:2ZNQ PDBsum:3D5F PDBsum:3DY6 PDBsum:3ET2
PDBsum:3GWX PDBsum:3GZ9 PDBsum:3OZ0 PDBsum:3PEQ PDBsum:3SP9
PDBsum:3TKM ProteinModelPortal:Q03181 SMR:Q03181 IntAct:Q03181
MINT:MINT-1200178 STRING:Q03181 PhosphoSite:Q03181 DMDM:417522
PaxDb:Q03181 PRIDE:Q03181 DNASU:5467 Ensembl:ENST00000311565
Ensembl:ENST00000337400 Ensembl:ENST00000360694
Ensembl:ENST00000444397 Ensembl:ENST00000448077 GeneID:5467
KEGG:hsa:5467 UCSC:uc003okm.3 GeneCards:GC06P035310
H-InvDB:HIX0165038 HGNC:HGNC:9235 HPA:CAB017635 MIM:600409
neXtProt:NX_Q03181 PharmGKB:PA33557 InParanoid:Q03181
PhylomeDB:Q03181 BindingDB:Q03181 ChEMBL:CHEMBL3979 ChiTaRS:PPARD
EvolutionaryTrace:Q03181 GenomeRNAi:5467 NextBio:21160
ArrayExpress:Q03181 Bgee:Q03181 CleanEx:HS_PPARD
Genevestigator:Q03181 GermOnline:ENSG00000112033 Uniprot:Q03181
Length = 441
Score = 255 (94.8 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 83/293 (28%), Positives = 137/293 (46%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + + ++ + A+L + + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGSQYNPQV--ADL---KAFSKHIYNAYLKNFNMT 193
Query: 80 ADKIEPMLRRAREH--PTYTACPSTL-----ACPLNPNSHPLQGQQELLQDFSERFS--- 129
K +L H P TL + L +E+ R
Sbjct: 194 KKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT 253
Query: 130 -PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 254 VETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGSGF 311
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 312 VTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVE 371
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 372 AIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTE 424
>UNIPROTKB|F1LNV3 [details] [associations]
symbol:F1LNV3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104109 EMBL:AC133978 IPI:IPI00948562
Ensembl:ENSRNOT00000067042 ArrayExpress:F1LNV3 Uniprot:F1LNV3
Length = 486
Score = 256 (95.2 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 75/240 (31%), Positives = 123/240 (51%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L D + ++ V +++ +TC ++E +LR+ + L S+ +
Sbjct: 233 ASLTDIEYLVQNVCKSYRETCQL---RLEDLLRQR----------TNLFSREEVTSYQRK 279
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 280 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM-CRAYN 338
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 339 ANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVLINANR 398
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
GL+ K VE ++ LE H L + H + L A+L LR+L H EKL FQ
Sbjct: 399 PGLQEKRRVEHLQYNLELAFHHHLCKTH--RQGLLAKLPPK-GKLRSLCSQHVEKLQDFQ 455
>RGD|1595785 [details] [associations]
symbol:Rorc "RAR-related orphan receptor C" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IEP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:1595785
GO:GO:0005634 GO:GO:0046872 GO:GO:0007623 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468 GO:GO:0033077
GO:GO:0030522 GO:GO:0048535 GO:GO:0048537 GO:GO:0072539 OMA:AFPPLYK
EMBL:AC133978 IPI:IPI00370940 Ensembl:ENSRNOT00000028292
ArrayExpress:F1LRS6 Uniprot:F1LRS6
Length = 508
Score = 256 (95.2 bits), Expect = 5.6e-19, P = 5.6e-19
Identities = 75/240 (31%), Positives = 123/240 (51%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L D + ++ V +++ +TC ++E +LR+ + L S+ +
Sbjct: 255 ASLTDIEYLVQNVCKSYRETCQL---RLEDLLRQR----------TNLFSREEVTSYQRK 301
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LLKAG EV+LVR+ C +
Sbjct: 302 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLKAGAMEVVLVRM-CRAYN 360
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 361 ANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVLINANR 420
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
GL+ K VE ++ LE H L + H + L A+L LR+L H EKL FQ
Sbjct: 421 PGLQEKRRVEHLQYNLELAFHHHLCKTH--RQGLLAKLPPK-GKLRSLCSQHVEKLQDFQ 477
>UNIPROTKB|E2R2A6 [details] [associations]
symbol:RARB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0048566 "embryonic
digestive tract development" evidence=IEA] [GO:0048048 "embryonic
eye morphogenesis" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
differentiation" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003417
"growth plate cartilage development" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003708 "retinoic acid receptor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0008285 GO:GO:0022008
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0043065 GO:GO:0048566 GO:GO:0035264
GO:GO:0035116 GO:GO:0048048 GO:GO:0001657 GO:GO:0021756
GO:GO:0032331 GO:GO:0003417 GO:GO:0003708 GO:GO:0061037
GO:GO:0055012 GeneTree:ENSGT00680000099662 CTD:5915 KO:K08528
OMA:QEVFVCI EMBL:AAEX03013556 RefSeq:XP_850755.1
Ensembl:ENSCAFT00000009235 GeneID:477045 KEGG:cfa:477045
NextBio:20852594 Uniprot:E2R2A6
Length = 448
Score = 253 (94.1 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 60/216 (27%), Positives = 112/216 (51%)
Query: 81 DKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
D + +R+A + + C + H ++ L FSE + I +VEFAK
Sbjct: 178 DDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAK 237
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
R+PGF+ L DQ+TLLKA ++L++R+ + + ++M +G L R +H++
Sbjct: 238 RLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGP 297
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L D +F FA +L L + DTE GL S+I +I R L V++++ L L +
Sbjct: 298 LTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIR 357
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 358 KRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 393
>UNIPROTKB|A4IFL4 [details] [associations]
symbol:PPARD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070539 "linoleic acid binding" evidence=IEA]
[GO:0060612 "adipose tissue development" evidence=IEA] [GO:0051546
"keratinocyte migration" evidence=IEA] [GO:0050680 "negative
regulation of epithelial cell proliferation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=IEA] [GO:0043616 "keratinocyte proliferation"
evidence=IEA] [GO:0042640 "anagen" evidence=IEA] [GO:0042060 "wound
healing" evidence=IEA] [GO:0031589 "cell-substrate adhesion"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0015908 "fatty acid transport" evidence=IEA] [GO:0014068
"positive regulation of phosphatidylinositol 3-kinase cascade"
evidence=IEA] [GO:0008366 "axon ensheathment" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006635 "fatty acid
beta-oxidation" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR003075 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0043616 GO:GO:0030154
GO:GO:0046872 GO:GO:0008144 GO:GO:0008284 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068 GO:GO:0060612
GO:GO:0015908 GO:GO:0006635 GO:GO:0000122 GO:GO:0001890
GO:GO:0042060 GO:GO:0042640 GO:GO:0045598 GO:GO:0050680
GO:GO:0031589 GO:GO:0008366 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
HOGENOM:HOG000261626 HOVERGEN:HBG106004 OrthoDB:EOG4FFD1Q CTD:5467
KO:K04504 OMA:SSLFLND EMBL:DAAA02054950 EMBL:BC134636
IPI:IPI00699355 RefSeq:NP_001077105.1 UniGene:Bt.13264 SMR:A4IFL4
STRING:A4IFL4 Ensembl:ENSBTAT00000023319 GeneID:353106
KEGG:bta:353106 InParanoid:A4IFL4 NextBio:20812691 Uniprot:A4IFL4
Length = 441
Score = 252 (93.8 bits), Expect = 9.5e-19, P = 9.5e-19
Identities = 85/294 (28%), Positives = 137/294 (46%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLST-VVRAHLDTCAF 78
HNA +RFGR+P+ EK +++A + + N A+L R S + A+L
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGL--TANEGSQHNPQVADL----RAFSKHIYSAYLKNFNM 192
Query: 79 TADKIEPMLRRAREH--P-------TYTACPSTLACPLNPNSHPLQGQQELLQDFSERFS 129
T K +L H P T L NS P + + + + +
Sbjct: 193 TKKKARGILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNSLPPYKEISVHVFYRCQCT 252
Query: 130 P--TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
T+R++ EFAK IP F L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 253 TVETVRELTEFAKSIPSFGDLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGTG 310
Query: 188 LV-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELV 244
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N V
Sbjct: 311 FVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVSQV 370
Query: 245 ERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
E ++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 371 EAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTE 424
>MGI|MGI:97857 [details] [associations]
symbol:Rarb "retinoic acid receptor, beta" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0001657 "ureteric bud
development" evidence=IMP] [GO:0003417 "growth plate cartilage
development" evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0008144 "drug binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IGI] [GO:0021756 "striatum development" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0031641 "regulation of
myelination" evidence=ISO] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IMP] [GO:0032403 "protein
complex binding" evidence=ISO] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IGI] [GO:0035264 "multicellular organism
growth" evidence=IGI] [GO:0043065 "positive regulation of apoptotic
process" evidence=IGI] [GO:0043068 "positive regulation of
programmed cell death" evidence=IGI] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IGI;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=ISO] [GO:0048048 "embryonic eye morphogenesis"
evidence=IGI] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=ISO] [GO:0048566 "embryonic digestive tract
development" evidence=ISO] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IMP] [GO:0061037 "negative
regulation of cartilage development" evidence=IMP]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:97857 GO:GO:0005634 GO:GO:0008285
GO:GO:0022008 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0003700 GO:GO:0000122 GO:GO:0043065
GO:GO:0048566 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0001657 GO:GO:0021756 GO:GO:0032331 GO:GO:0003417
HOVERGEN:HBG005606 GO:GO:0003708 GO:GO:0061037 PDB:1XDK PDBsum:1XDK
GO:GO:0055012 eggNOG:NOG297448 HOGENOM:HOG000010312
OrthoDB:EOG4F7NK7 CTD:5915 KO:K08528 OMA:QEVFVCI EMBL:X56574
EMBL:X56569 EMBL:X56573 EMBL:S56660 EMBL:S92180 IPI:IPI00130386
IPI:IPI00230346 IPI:IPI00230347 IPI:IPI00230348 PIR:S05051
RefSeq:NP_035373.1 UniGene:Mm.259318 ProteinModelPortal:P22605
SMR:P22605 IntAct:P22605 STRING:P22605 PRIDE:P22605
Ensembl:ENSMUST00000063750 GeneID:218772 KEGG:mmu:218772
UCSC:uc007xvc.1 InParanoid:P22605 BindingDB:P22605
ChEMBL:CHEMBL3266 EvolutionaryTrace:P22605 NextBio:376409
Bgee:P22605 CleanEx:MM_RARB Genevestigator:P22605
GermOnline:ENSMUSG00000017491 Uniprot:P22605
Length = 482
Score = 253 (94.1 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 60/216 (27%), Positives = 112/216 (51%)
Query: 81 DKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
D + +R+A + + C + H ++ L FSE + I +VEFAK
Sbjct: 212 DDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAK 271
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
R+PGF+ L DQ+TLLKA ++L++R+ + + ++M +G L R +H++
Sbjct: 272 RLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGP 331
Query: 201 LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLN 260
L D +F FA +L L + DTE GL S+I +I R L V++++ L L +
Sbjct: 332 LTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIR 391
Query: 261 QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 392 KRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 427
>UNIPROTKB|A9XAM2 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9823 "Sus scrofa" [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0070539 "linoleic acid
binding" evidence=IEA] [GO:0060612 "adipose tissue development"
evidence=IEA] [GO:0051546 "keratinocyte migration" evidence=IEA]
[GO:0050680 "negative regulation of epithelial cell proliferation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0042060 "wound healing" evidence=IEA] [GO:0031589
"cell-substrate adhesion" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0008366
"axon ensheathment" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0006635 "fatty acid beta-oxidation" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0043616
GO:GO:0030154 GO:GO:0046872 GO:GO:0008144 GO:GO:0008284
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0060612 GO:GO:0015908 GO:GO:0006635 GO:GO:0000122
GO:GO:0001890 GO:GO:0042060 GO:GO:0042640 GO:GO:0045598
GO:GO:0050680 GO:GO:0031589 GO:GO:0008366 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
HOGENOM:HOG000261626 HOVERGEN:HBG106004 CTD:5467 KO:K04504
OMA:SSLFLND EMBL:CU467978 EMBL:EF079119 EMBL:EU169095 EMBL:GU565977
EMBL:GU565976 RefSeq:NP_001123713.1 RefSeq:NP_999317.2
UniGene:Ssc.15972 SMR:A9XAM2 STRING:A9XAM2
Ensembl:ENSSSCT00000001714 GeneID:397297 KEGG:ssc:397297
Uniprot:A9XAM2
Length = 441
Score = 250 (93.1 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 84/293 (28%), Positives = 135/293 (46%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + + N A+L + L + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGL--TANEGSQHNPQVADLKAFSKHLYS---AYLKNFNMT 193
Query: 80 ADKIEPMLRRAREH--PTYTACPSTL-----ACPLNPNSHPLQGQQELLQDFSERFS--- 129
K +L H P TL + L +E+ R
Sbjct: 194 KKKARAILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT 253
Query: 130 -PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP F L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 254 VETVRELTEFAKSIPSFDHLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGTGF 311
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 312 VTREFLRSIRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVSQVE 371
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + L L NHP+ L +L+ + DLR L H++ + + TE
Sbjct: 372 AIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTE 424
>ZFIN|ZDB-GENE-980526-72 [details] [associations]
symbol:rarab "retinoic acid receptor, alpha b"
species:7955 "Danio rerio" [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0003708
"retinoic acid receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0033339 "pectoral fin development" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-72 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:BX537121 EMBL:CR392003
IPI:IPI00993231 Ensembl:ENSDART00000126022 Uniprot:E7EZ95
Length = 460
Score = 250 (93.1 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 68/255 (26%), Positives = 127/255 (49%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTAD--KIEPMLRRAREHPTYTACPST 102
KC E ++ E D +R + L+ + D K+ +R+A + + C
Sbjct: 144 KCLEVGMSKESVRNDRNKRKKDDKKQECLENYVLSPDTEKMIEQVRKAHQETFPSLCQLG 203
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N H + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 204 KYTTNNSADHRVALDVDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 264 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 323
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKL-ENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
GL S+I ++ R L + V+ ++ L E + ++V N+ P + ++ +++ + DLR
Sbjct: 324 GLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIYVRNRR-PHKPHMFPKMLMKITDLR 382
Query: 282 TLNQLHSEKLVAFQM 296
+++ +E+++ +M
Sbjct: 383 SISAKGAERVITLKM 397
>UNIPROTKB|F1N7B3 [details] [associations]
symbol:RORC "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072539 "T-helper 17 cell differentiation"
evidence=IEA] [GO:0048537 "mucosal-associated lymphoid tissue
development" evidence=IEA] [GO:0048535 "lymph node development"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006468 "protein phosphorylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003079 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006468
GO:GO:0033077 GO:GO:0030522 GO:GO:0048535
GeneTree:ENSGT00700000104109 GO:GO:0048537 GO:GO:0072539
OMA:AFPPLYK EMBL:DAAA02007247 IPI:IPI00687924 UniGene:Bt.49360
Ensembl:ENSBTAT00000044130 Uniprot:F1N7B3
Length = 506
Score = 251 (93.4 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 74/248 (29%), Positives = 125/248 (50%)
Query: 48 KCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPL 107
+ T + A L + + ++ V +++ DTC ++E +LR+ S +
Sbjct: 257 RSTPEVPYASLTEIEHLVQNVCKSYRDTCQL---RLEDLLRQR----------SNIFSRE 303
Query: 108 NPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLV 167
+ + E+ + R + I+ VVEFAKR+PGF LC +DQ+ LLKAG EV+LV
Sbjct: 304 EVAGYQRKSMWEMWGRCAHRLTEAIQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLV 363
Query: 168 RLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSS 227
R+ +++ D++ L+ S+FDF+ L+ L S+ EI L+++
Sbjct: 364 RMCRAYNADN-------------DTVFFEGCSELISSIFDFSRSLSALRFSEDEIALYTA 410
Query: 228 IVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLH 287
+V+I+ +R GL+ K VE+++ LE H L + H + + A+L LR+L H
Sbjct: 411 LVLINANRPGLQEKRKVEQLQCNLELAFHHHLCKTH--RQGILAKLPPK-GKLRSLCSQH 467
Query: 288 SEKLVAFQ 295
EKL FQ
Sbjct: 468 VEKLQTFQ 475
>UNIPROTKB|Q0ZAQ8 [details] [associations]
symbol:PPARD "Peroxisome proliferator-activated receptor
delta" species:9615 "Canis lupus familiaris" [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISS] [GO:0008289 "lipid
binding" evidence=ISS] [GO:0070539 "linoleic acid binding"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0060612 "adipose tissue
development" evidence=IEA] [GO:0051546 "keratinocyte migration"
evidence=IEA] [GO:0050680 "negative regulation of epithelial cell
proliferation" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0043616 "keratinocyte
proliferation" evidence=IEA] [GO:0042640 "anagen" evidence=IEA]
[GO:0042060 "wound healing" evidence=IEA] [GO:0031589
"cell-substrate adhesion" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0015908 "fatty acid transport"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IEA] [GO:0008366
"axon ensheathment" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0006635 "fatty acid beta-oxidation"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003074 InterPro:IPR003075
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01288 PRINTS:PR01290
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0043616
GO:GO:0030154 GO:GO:0046872 GO:GO:0008144 GO:GO:0008284
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0014068
GO:GO:0060612 GO:GO:0015908 GO:GO:0006635 GO:GO:0000122
GO:GO:0001890 GO:GO:0042060 GO:GO:0042640 GO:GO:0045598
GO:GO:0050680 GO:GO:0031589 GO:GO:0008366 eggNOG:NOG266867
GeneTree:ENSGT00700000104361 GO:GO:0070539 GO:GO:0051546
HOGENOM:HOG000261626 HOVERGEN:HBG106004 OrthoDB:EOG4FFD1Q
EMBL:DQ648277 RefSeq:NP_001041567.1 UniGene:Cfa.26703
ProteinModelPortal:Q0ZAQ8 SMR:Q0ZAQ8 STRING:Q0ZAQ8
Ensembl:ENSCAFT00000002032 GeneID:481756 KEGG:cfa:481756 CTD:5467
InParanoid:Q0ZAQ8 KO:K04504 OMA:SSLFLND BindingDB:Q0ZAQ8
ChEMBL:CHEMBL1932904 NextBio:20856496 Uniprot:Q0ZAQ8
Length = 441
Score = 249 (92.7 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 84/293 (28%), Positives = 136/293 (46%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EK +++A + + T+ + A+L + + A+L T
Sbjct: 140 HNA-IRFGRMPEAEKRKLVAGLTANEGTQHNPQV--ADL---KAFSKHIYNAYLKNFNMT 193
Query: 80 ADKIEPMLRRAREH--PTYTACPSTL-----ACPLNPNSHPLQGQQELLQDFSERFS--- 129
K +L H P TL + L +E+ R
Sbjct: 194 KKKARGILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTT 253
Query: 130 -PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EFAK IP FS L +DQVTLLK GV E + LA + + + ++ NG
Sbjct: 254 VETVRELTEFAKSIPSFSNLFLNDQVTLLKYGVHEAIFAMLASIVNK--DGLLVANGTGF 311
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +++ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 312 VTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLINVPQVE 371
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ + L L NHP L +L+ + DLR L H++ + + TE
Sbjct: 372 AIQDTILRALEFHLQANHPYAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTE 424
>UNIPROTKB|G3X6X1 [details] [associations]
symbol:G3X6X1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0061037 "negative regulation of cartilage development"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0048566 "embryonic digestive
tract development" evidence=IEA] [GO:0048048 "embryonic eye
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0032331 "negative regulation of chondrocyte
differentiation" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IEA] [GO:0021756 "striatum development" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003417
"growth plate cartilage development" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003708 "retinoic acid receptor activity" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0008285 GO:GO:0022008 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0043065 GO:GO:0048566 GO:GO:0035264 GO:GO:0035116
GO:GO:0048048 GO:GO:0001657 GO:GO:0021756 GO:GO:0032331
GO:GO:0003417 GO:GO:0003708 GO:GO:0061037 GO:GO:0055012
GeneTree:ENSGT00680000099662 EMBL:DAAA02061104 EMBL:DAAA02061105
EMBL:DAAA02061106 EMBL:DAAA02061107 EMBL:DAAA02061108
ProteinModelPortal:G3X6X1 Ensembl:ENSBTAT00000015305 OMA:DVFICIN
Uniprot:G3X6X1
Length = 446
Score = 248 (92.4 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 68/253 (26%), Positives = 125/253 (49%)
Query: 49 CTEKAL--AAELDDEQRMLSTVVRAHL-DTCAFTA--DKIEPMLRRAREHPTYTACPSTL 103
C E AL AA +D + + ++ TA D + +R+A + + C
Sbjct: 139 CYEHALSSAAVRNDRNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGK 198
Query: 104 ACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFE 163
+ H ++ L FSE + I +VEFAKR+PGF+ L DQ+TLLKA +
Sbjct: 199 YTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLD 258
Query: 164 VLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIG 223
+L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E G
Sbjct: 259 ILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETG 318
Query: 224 LFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTL 283
L S+I +I R L V++++ L L + + P + ++ +++ + DLR++
Sbjct: 319 LLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSI 378
Query: 284 NQLHSEKLVAFQM 296
+ +E+++ +M
Sbjct: 379 SAKGAERVITLKM 391
>UNIPROTKB|F1SGE6 [details] [associations]
symbol:RARG "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070384 "Harderian gland development" evidence=IEA]
[GO:0061037 "negative regulation of cartilage development"
evidence=IEA] [GO:0060740 "prostate gland epithelium morphogenesis"
evidence=IEA] [GO:0060534 "trachea cartilage development"
evidence=IEA] [GO:0048048 "embryonic eye morphogenesis"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0032526 "response to retinoic acid" evidence=IEA] [GO:0032331
"negative regulation of chondrocyte differentiation" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003430 "growth plate cartilage
chondrocyte growth" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0008285
GO:GO:0009952 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0005667 GO:GO:0000122 GO:GO:0043065
GO:GO:0032526 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0060740 GO:GO:0032331 GO:GO:0003708 CTD:5916 GO:GO:0070384
GO:GO:0061037 GeneTree:ENSGT00680000099662 KO:K08529 GO:GO:0003430
GO:GO:0060534 EMBL:CU550678 RefSeq:XP_001924421.3 UniGene:Ssc.97565
Ensembl:ENSSSCT00000000277 GeneID:397221 KEGG:ssc:397221
OMA:TFNSMRS Uniprot:F1SGE6
Length = 447
Score = 248 (92.4 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 70/254 (27%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHP-TYTACPSTL 103
KC E ++ E D ++ LD+ + E + + ++ H T+ +
Sbjct: 138 KCFEVGMSKEAVRNDRNKKKKEVKEEGSLDSYELSPQLEELITKVSKAHQETFPSLCQLG 197
Query: 104 ACPLNPNS-HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N ++ H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 198 KYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACL 257
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 258 DILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTET 317
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L E V++++ L L + P Q + ++ + DLR
Sbjct: 318 GLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRG 377
Query: 283 LNQLHSEKLVAFQM 296
++ +E+ + +M
Sbjct: 378 ISTKGAERAITLKM 391
>UNIPROTKB|Q08DD4 [details] [associations]
symbol:RARG "RARG protein" species:9913 "Bos taurus"
[GO:0070384 "Harderian gland development" evidence=IEA] [GO:0061037
"negative regulation of cartilage development" evidence=IEA]
[GO:0060740 "prostate gland epithelium morphogenesis" evidence=IEA]
[GO:0060534 "trachea cartilage development" evidence=IEA]
[GO:0048048 "embryonic eye morphogenesis" evidence=IEA] [GO:0046965
"retinoid X receptor binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0032526 "response to retinoic acid" evidence=IEA]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0008285 "negative regulation of
cell proliferation" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003430 "growth plate cartilage
chondrocyte growth" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0008285
GO:GO:0009952 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0005667 GO:GO:0000122 GO:GO:0043065
GO:GO:0032526 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0060740 GO:GO:0032331 HOVERGEN:HBG005606 GO:GO:0003708
CTD:5916 GO:GO:0070384 GO:GO:0061037 eggNOG:NOG297448
GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7
KO:K08529 OMA:RSPQPDQ GO:GO:0003430 GO:GO:0060534 EMBL:DAAA02012865
EMBL:BC123809 IPI:IPI00707092 RefSeq:NP_001124228.1
UniGene:Bt.53782 SMR:Q08DD4 STRING:Q08DD4
Ensembl:ENSBTAT00000009984 GeneID:540425 KEGG:bta:540425
InParanoid:Q08DD4 NextBio:20878630 Uniprot:Q08DD4
Length = 458
Score = 248 (92.4 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 70/254 (27%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHP-TYTACPSTL 103
KC E ++ E D ++ LD+ + E + + ++ H T+ +
Sbjct: 149 KCFEVGMSKEAVRNDRNKKKKEVKEEGSLDSYELSPQLEELITKVSKAHQETFPSLCQLG 208
Query: 104 ACPLNPNS-HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N ++ H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 209 KYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACL 268
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 269 DILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTET 328
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L E V++++ L L + P Q + ++ + DLR
Sbjct: 329 GLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRG 388
Query: 283 LNQLHSEKLVAFQM 296
++ +E+ + +M
Sbjct: 389 ISTKGAERAITLKM 402
>UNIPROTKB|F1PN60 [details] [associations]
symbol:RARG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708 CTD:5916
GeneTree:ENSGT00680000099662 KO:K08529 OMA:RSPQPDQ
EMBL:AAEX03014990 EMBL:AAEX03014987 EMBL:AAEX03014988
EMBL:AAEX03014989 RefSeq:XP_849260.2 Ensembl:ENSCAFT00000011309
GeneID:486508 KEGG:cfa:486508 Uniprot:F1PN60
Length = 458
Score = 248 (92.4 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 70/254 (27%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL---DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHP-TYTACPSTL 103
KC E ++ E D ++ LD+ + E + + ++ H T+ +
Sbjct: 149 KCFEVGMSKEAVRNDRNKKKKEVKEEGSLDSYELSPQLEELITKVSKAHQETFPSLCQLG 208
Query: 104 ACPLNPNS-HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N ++ H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA
Sbjct: 209 KYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACL 268
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + DTE
Sbjct: 269 DILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTET 328
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L E V++++ L L + P Q + ++ + DLR
Sbjct: 329 GLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRG 388
Query: 283 LNQLHSEKLVAFQM 296
++ +E+ + +M
Sbjct: 389 ISTKGAERAITLKM 402
>ZFIN|ZDB-GENE-990415-250 [details] [associations]
symbol:rorca "RAR-related orphan receptor C a"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003079 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01293 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-990415-250 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104109 EMBL:CR450766 IPI:IPI00844980
ProteinModelPortal:F1QGI9 Ensembl:ENSDART00000100484 Bgee:F1QGI9
Uniprot:F1QGI9
Length = 480
Score = 248 (92.4 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 68/236 (28%), Positives = 132/236 (55%)
Query: 62 QRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELL 121
+R+ V+++H++T ++ ++++ R A YT P + N + + L
Sbjct: 231 ERITQNVIKSHIETSQYSTEELK---RLA--WTLYT--PEEIRVYQNKPT------EMLW 277
Query: 122 QDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMI 181
Q + + + I+ VVEFAKRI GF L +DQ+ LLKAG +VLL+R+ C + N+ +
Sbjct: 278 QQCAVQLTNAIQYVVEFAKRISGFMDLSQNDQIILLKAGCLDVLLIRM-CRAYNPINNTL 336
Query: 182 CLNGEVLVRDSIHSS-NARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRN 240
+G+ + L+ ++F+ A+ L+ L LS+ E+ LF++ V++SP R L +
Sbjct: 337 LFDGKFASPQLFKALVGCDDLVSAVFEMAKTLSRLQLSEEEMALFTATVLLSPDRPWLTD 396
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V++++ K+ L H L+++ + L A+++S LP ++++ LH +KL F++
Sbjct: 397 AQKVQKLQEKVYVALQHYLHKSGVHEEKL-AKMVSKLPMMKSICNLHIDKLEFFRL 451
Score = 42 (19.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 80 VKFGRMSKKQRDSLYAEVQK 99
>ZFIN|ZDB-GENE-980526-531 [details] [associations]
symbol:rarga "retinoic acid receptor gamma a"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0060037 "pharyngeal system development"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-980526-531 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 EMBL:BX465864 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:BX546466 IPI:IPI00817162
Ensembl:ENSDART00000103158 ArrayExpress:F1RAM8 Bgee:F1RAM8
Uniprot:F1RAM8
Length = 507
Score = 249 (92.7 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 58/187 (31%), Positives = 100/187 (53%)
Query: 110 NSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRL 169
+ H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 212 SDHRIQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRI 271
Query: 170 ACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I
Sbjct: 272 CTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAIC 331
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
+I R L E V+R++ L L + P + ++ ++ + DLR ++ +E
Sbjct: 332 LICGDRMDLEEPERVDRLQEPLLEALKIYARRRRPNKPHMFPRMLMKITDLRGISTKGAE 391
Query: 290 KLVAFQM 296
+ + +M
Sbjct: 392 RAITLKM 398
Score = 41 (19.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 470 RALRQKDSAEAEPLHPSLASSHSMLAKSLMEGPRMTPDQLKRTE 513
R + K + A L + L + ++E P DQ + TE
Sbjct: 383 RGISTKGAERAITLKMEIPGPMPPLIREMLENPEAFEDQSESTE 426
>MGI|MGI:104856 [details] [associations]
symbol:Rorc "RAR-related orphan receptor gamma" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006468 "protein
phosphorylation" evidence=IMP] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IMP] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IMP] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0046632
"alpha-beta T cell differentiation" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048535 "lymph node
development" evidence=IMP] [GO:0048537 "mucosal-associated lymphoid
tissue development" evidence=IMP] [GO:0072539 "T-helper 17 cell
differentiation" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:104856
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006468 GO:GO:0033077 GO:GO:0030522
GO:GO:0048535 GeneTree:ENSGT00700000104109 HOGENOM:HOG000010200
HOVERGEN:HBG106848 CTD:6097 eggNOG:NOG317095 KO:K08534
GO:GO:0048537 GO:GO:0072539 EMBL:U43508 EMBL:AF019660 EMBL:AF019655
EMBL:AF019656 EMBL:AF019657 EMBL:AF019658 EMBL:AF019659 EMBL:U39071
EMBL:AF163668 EMBL:AJ132394 EMBL:BC014804 IPI:IPI00228543
IPI:IPI00311164 PIR:JC5375 RefSeq:NP_035411.2 UniGene:Mm.4372
ProteinModelPortal:P51450 SMR:P51450 DIP:DIP-59439N IntAct:P51450
STRING:P51450 PhosphoSite:P51450 PRIDE:P51450
Ensembl:ENSMUST00000029795 Ensembl:ENSMUST00000107292 GeneID:19885
KEGG:mmu:19885 InParanoid:P51450 OrthoDB:EOG4229JB
ChEMBL:CHEMBL1293231 NextBio:297392 Bgee:P51450 CleanEx:MM_RORC
Genevestigator:P51450 GermOnline:ENSMUSG00000028150 Uniprot:P51450
Length = 516
Score = 248 (92.4 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 74/240 (30%), Positives = 121/240 (50%)
Query: 56 AELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
A L D + ++ V ++ +TC ++E +LR+ + L S+ +
Sbjct: 263 ASLTDIEYLVQNVCKSFRETCQL---RLEDLLRQR----------TNLFSREEVTSYQRK 309
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E+ + + + I+ VVEFAKR+ GF LC +DQ+ LL AG EV+LVR+ C +
Sbjct: 310 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIILLTAGAMEVVLVRM-CRAYN 368
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
N + G+ + + L+ S+FDF+ L+ L S+ EI L++++V+I+ +R
Sbjct: 369 ANNHTVFFEGKYGGVELFRALGCSELISSIFDFSHFLSALCFSEDEIALYTALVLINANR 428
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
GL+ K VE ++ LE H L + H + L A+L LR+L H EKL FQ
Sbjct: 429 PGLQEKRRVEHLQYNLELAFHHHLCKTH--RQGLLAKLPPK-GKLRSLCSQHVEKLQIFQ 485
Score = 42 (19.8 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 24 VRFGRVPKREKARILAAMQQSTNTKCTEKALA 55
V+FGR+ K+++ + A +Q+ + ++ +A
Sbjct: 101 VKFGRMSKKQRDSLHAEVQKQLQQQQQQEQVA 132
>UNIPROTKB|P13631 [details] [associations]
symbol:RARG "Retinoic acid receptor gamma" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003430 "growth plate cartilage chondrocyte growth"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0031641 "regulation of
myelination" evidence=IEA] [GO:0032331 "negative regulation of
chondrocyte differentiation" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0060534 "trachea
cartilage development" evidence=IEA] [GO:0060740 "prostate gland
epithelium morphogenesis" evidence=IEA] [GO:0061037 "negative
regulation of cartilage development" evidence=IEA] [GO:0070384
"Harderian gland development" evidence=IEA] [GO:0071300 "cellular
response to retinoic acid" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032526 "response
to retinoic acid" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=NAS] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=IDA] [GO:0060070 "canonical Wnt receptor
signaling pathway" evidence=TAS] [GO:0008361 "regulation of cell
size" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005667 "transcription factor complex"
evidence=ISS] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISS] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0043068 "positive regulation
of programmed cell death" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0046965 "retinoid X receptor binding"
evidence=ISS] [GO:0048048 "embryonic eye morphogenesis"
evidence=ISS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0016021
GO:GO:0008285 GO:GO:0009952 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 EMBL:CH471054
GO:GO:0003700 GO:GO:0008361 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0005667 GO:GO:0000122 GO:GO:0043065 GO:GO:0032526
GO:GO:0035264 GO:GO:0035116
Pathway_Interaction_DB:retinoic_acid_pathway DrugBank:DB00755
GO:GO:0048384 GO:GO:0048048 DrugBank:DB00459 GO:GO:0060740
GO:GO:0006367 GO:GO:0060070 GO:GO:0046965 GO:GO:0032331
HOVERGEN:HBG005606 GO:GO:0003708 EMBL:AC021072 CTD:5916
GO:GO:0070384 GO:GO:0061037 DrugBank:DB00523 DrugBank:DB00926
eggNOG:NOG297448 OrthoDB:EOG4F7NK7 DrugBank:DB00210
DrugBank:DB00799 EMBL:M24857 EMBL:M57707 EMBL:M38258 EMBL:AK297023
EMBL:AK297277 EMBL:AK316259 EMBL:AC073573 EMBL:BC093727
EMBL:BC093729 EMBL:M32074 EMBL:X57280 EMBL:AJ250835 EMBL:AY013703
EMBL:AY013704 IPI:IPI00427809 IPI:IPI00465344 IPI:IPI00788710
PIR:A33903 PIR:C35991 RefSeq:NP_000957.1 RefSeq:NP_001036193.1
RefSeq:NP_001230659.1 RefSeq:NP_001230661.1 UniGene:Hs.1497
UniGene:Hs.733399 PDB:1EXA PDB:1EXX PDB:1FCX PDB:1FCY PDB:1FCZ
PDB:1FD0 PDB:2LBD PDB:3LBD PDB:4LBD PDBsum:1EXA PDBsum:1EXX
PDBsum:1FCX PDBsum:1FCY PDBsum:1FCZ PDBsum:1FD0 PDBsum:2LBD
PDBsum:3LBD PDBsum:4LBD ProteinModelPortal:P13631 SMR:P13631
IntAct:P13631 STRING:P13631 PhosphoSite:P13631 DMDM:133498
PaxDb:P13631 PRIDE:P13631 DNASU:5916 Ensembl:ENST00000327550
Ensembl:ENST00000338561 Ensembl:ENST00000394426
Ensembl:ENST00000425354 Ensembl:ENST00000543726 GeneID:5916
KEGG:hsa:5916 UCSC:uc001sce.3 GeneCards:GC12M053604
H-InvDB:HIX0129677 HGNC:HGNC:9866 MIM:180190 neXtProt:NX_P13631
PharmGKB:PA34227 InParanoid:P13631 KO:K08529 OMA:RSPQPDQ
PhylomeDB:P13631 BindingDB:P13631 ChEMBL:CHEMBL2003
EvolutionaryTrace:P13631 GenomeRNAi:5916 NextBio:23030
ArrayExpress:P13631 Bgee:P13631 CleanEx:HS_RARG
Genevestigator:P13631 GermOnline:ENSG00000172819 GO:GO:0003430
GO:GO:0060534 Uniprot:P13631
Length = 454
Score = 245 (91.3 bits), Expect = 6.7e-18, P = 6.7e-18
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>MGI|MGI:97858 [details] [associations]
symbol:Rarg "retinoic acid receptor, gamma" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0002063 "chondrocyte
development" evidence=IMP] [GO:0003417 "growth plate cartilage
development" evidence=IGI] [GO:0003430 "growth plate cartilage
chondrocyte growth" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IC;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003708 "retinoic acid
receptor activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667
"transcription factor complex" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI;IMP]
[GO:0010468 "regulation of gene expression" evidence=IGI]
[GO:0010628 "positive regulation of gene expression" evidence=IDA]
[GO:0032331 "negative regulation of chondrocyte differentiation"
evidence=IMP] [GO:0032526 "response to retinoic acid" evidence=ISO]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IGI]
[GO:0035264 "multicellular organism growth" evidence=IGI]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IGI] [GO:0043068 "positive regulation of programmed cell
death" evidence=IGI] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045596 "negative regulation of cell
differentiation" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IC;IGI;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046965 "retinoid
X receptor binding" evidence=IMP] [GO:0048048 "embryonic eye
morphogenesis" evidence=IGI] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO;IMP] [GO:0048608 "reproductive
structure development" evidence=IMP] [GO:0048732 "gland
development" evidence=IMP] [GO:0060173 "limb development"
evidence=IMP] [GO:0060348 "bone development" evidence=IMP]
[GO:0060349 "bone morphogenesis" evidence=IGI;IMP] [GO:0060429
"epithelium development" evidence=IMP] [GO:0060534 "trachea
cartilage development" evidence=IMP] [GO:0060740 "prostate gland
epithelium morphogenesis" evidence=IMP] [GO:0061037 "negative
regulation of cartilage development" evidence=IMP] [GO:0070384
"Harderian gland development" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:97858
GO:GO:0008285 GO:GO:0009952 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0003700
GO:GO:0005667 GO:GO:0000122 GO:GO:0043065 GO:GO:0032526
GO:GO:0035264 GO:GO:0035116 GO:GO:0048384 GO:GO:0048048
GO:GO:0060740 GO:GO:0046965 GO:GO:0032331 HOVERGEN:HBG005606
GO:GO:0003708 CTD:5916 GO:GO:0070384 GO:GO:0061037 eggNOG:NOG297448
GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312 OrthoDB:EOG4F7NK7
KO:K08529 OMA:RSPQPDQ GO:GO:0003430 GO:GO:0060534 EMBL:X15848
EMBL:M34475 EMBL:M34476 EMBL:AK148064 EMBL:BC012923 EMBL:BC013709
EMBL:M32068 EMBL:M32069 EMBL:M32070 IPI:IPI00122863 IPI:IPI00320178
IPI:IPI00885347 PIR:B34714 PIR:S05052 RefSeq:NP_001036192.1
RefSeq:NP_035374.3 UniGene:Mm.1273 ProteinModelPortal:P18911
SMR:P18911 DIP:DIP-42822N MINT:MINT-2834553 STRING:P18911
PhosphoSite:P18911 PRIDE:P18911 Ensembl:ENSMUST00000043172
Ensembl:ENSMUST00000063339 GeneID:19411 KEGG:mmu:19411
UCSC:uc007she.1 InParanoid:P18911 BindingDB:P18911
ChEMBL:CHEMBL4177 NextBio:296533 Bgee:P18911 CleanEx:MM_RARG
Genevestigator:P18911 GermOnline:ENSMUSG00000001288 Uniprot:P18911
Length = 458
Score = 245 (91.3 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 218 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 277
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 278 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 337
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 338 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 397
Query: 292 VAFQM 296
+ +M
Sbjct: 398 ITLKM 402
>RGD|1583230 [details] [associations]
symbol:Rarg "retinoic acid receptor, gamma" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0002063 "chondrocyte development" evidence=ISO] [GO:0003417
"growth plate cartilage development" evidence=ISO] [GO:0003430
"growth plate cartilage chondrocyte growth" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IMP] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0008285 "negative regulation of
cell proliferation" evidence=IEA;ISO] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA;ISO]
[GO:0010468 "regulation of gene expression" evidence=ISO]
[GO:0010628 "positive regulation of gene expression" evidence=ISO]
[GO:0031641 "regulation of myelination" evidence=IDA] [GO:0032331
"negative regulation of chondrocyte differentiation"
evidence=IEA;ISO] [GO:0032526 "response to retinoic acid"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA;ISO] [GO:0035264 "multicellular organism growth"
evidence=IEA;ISO] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043068 "positive regulation of
programmed cell death" evidence=ISO] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0045596 "negative regulation of cell
differentiation" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0046965 "retinoid X receptor binding" evidence=IEA;ISO]
[GO:0048048 "embryonic eye morphogenesis" evidence=IEA;ISO]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=ISO;IMP] [GO:0048608 "reproductive structure development"
evidence=ISO] [GO:0048732 "gland development" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060348 "bone
development" evidence=ISO] [GO:0060349 "bone morphogenesis"
evidence=ISO] [GO:0060429 "epithelium development" evidence=ISO]
[GO:0060534 "trachea cartilage development" evidence=IEA;ISO]
[GO:0060740 "prostate gland epithelium morphogenesis"
evidence=IEA;ISO] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA;ISO] [GO:0070384 "Harderian gland
development" evidence=IEA;ISO] [GO:0071300 "cellular response to
retinoic acid" evidence=IEP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:1583230 GO:GO:0008285 GO:GO:0009952
GO:GO:0046872 GO:GO:0008284 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071300 GO:GO:0045944 GO:GO:0005667 GO:GO:0000122
GO:GO:0043065 GO:GO:0035264 GO:GO:0035116 GO:GO:0048048
GO:GO:0060740 GO:GO:0032331 GO:GO:0031641 GO:GO:0003708 CTD:5916
GO:GO:0070384 GO:GO:0061037 GeneTree:ENSGT00680000099662 KO:K08529
GO:GO:0003430 GO:GO:0060534 IPI:IPI00914166 RefSeq:NP_001128722.1
UniGene:Rn.198797 Ensembl:ENSRNOT00000016801 GeneID:685072
KEGG:rno:685072 UCSC:RGD:1583230 ChEMBL:CHEMBL2630 NextBio:728895
ArrayExpress:D3ZWV0 Uniprot:D3ZWV0
Length = 485
Score = 245 (91.3 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 59/185 (31%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+
Sbjct: 245 HRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICT 304
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 305 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 364
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L E V++++ L L + P Q + ++ + DLR ++ +E+
Sbjct: 365 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 424
Query: 292 VAFQM 296
+ +M
Sbjct: 425 ITLKM 429
>UNIPROTKB|E1BX47 [details] [associations]
symbol:NR1H3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0010867 "positive regulation of
triglyceride biosynthetic process" evidence=IEA] [GO:0010870
"positive regulation of receptor biosynthetic process"
evidence=IEA] [GO:0010875 "positive regulation of cholesterol
efflux" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0032270 "positive regulation
of cellular protein metabolic process" evidence=IEA] [GO:0032369
"negative regulation of lipid transport" evidence=IEA] [GO:0032570
"response to progesterone stimulus" evidence=IEA] [GO:0032810
"sterol response element binding" evidence=IEA] [GO:0034145
"positive regulation of toll-like receptor 4 signaling pathway"
evidence=IEA] [GO:0042632 "cholesterol homeostasis" evidence=IEA]
[GO:0043031 "negative regulation of macrophage activation"
evidence=IEA] [GO:0043277 "apoptotic cell clearance" evidence=IEA]
[GO:0044255 "cellular lipid metabolic process" evidence=IEA]
[GO:0045723 "positive regulation of fatty acid biosynthetic
process" evidence=IEA] [GO:0045861 "negative regulation of
proteolysis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048550 "negative regulation of pinocytosis" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0051006 "positive regulation of lipoprotein
lipase activity" evidence=IEA] [GO:0070328 "triglyceride
homeostasis" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0090188 "negative regulation
of pancreatic juice secretion" evidence=IEA] [GO:0090341 "negative
regulation of secretion of lysosomal enzymes" evidence=IEA]
[GO:2000189 "positive regulation of cholesterol homeostasis"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0045893 GO:GO:0046872 GO:GO:0050728 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045861 GO:GO:0044255
GO:GO:0042632 GO:GO:0000122 GO:GO:0051006 GO:GO:0000790
GO:GO:2000189 GO:GO:0070328 GO:GO:0010867 GO:GO:0032570
GO:GO:0032270 GO:GO:0045723 GO:GO:0043031 GO:GO:0043277
GeneTree:ENSGT00680000099585 GO:GO:0010870 GO:GO:0032369
GO:GO:0034145 GO:GO:0032376 GO:GO:0048550 InterPro:IPR023257
PRINTS:PR02034 GO:GO:0032810 GO:GO:0090188 GO:GO:0090341
EMBL:AADN02033476 IPI:IPI00818168 Ensembl:ENSGALT00000038464
ArrayExpress:E1BX47 Uniprot:E1BX47
Length = 389
Score = 241 (89.9 bits), Expect = 9.3e-18, P = 9.3e-18
Identities = 53/194 (27%), Positives = 105/194 (54%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P P+ + + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 181 PQVPDPNNREARQQRFAHFTELAIISVQEIVDFAKQLPGFRELTREDQIALLKTSTIEVM 240
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L RD + +F ++ +F+F++ +N L L+D E L
Sbjct: 241 LLETSRRYNPEIESITFLKDLSYNRDDFAKAGLQFEFINPIFEFSKGMNELQLNDAEYAL 300
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ LVER++ L + N P + ++ L LRTL+
Sbjct: 301 LIAINIFSADRPNVQDQSLVERLQHTYVEALHSYICINRPNDHLMFPRMLMKLVSLRTLS 360
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 361 SVHSEQVFALRLQD 374
>ZFIN|ZDB-GENE-000112-47 [details] [associations]
symbol:ppardb "peroxisome proliferator-activated
receptor delta b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003074 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-000112-47 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 HOGENOM:HOG000261626
HOVERGEN:HBG106004 KO:K04504 EMBL:CU302443 EMBL:BC162172
EMBL:BC162174 IPI:IPI00505722 RefSeq:NP_571543.1 UniGene:Dr.27180
SMR:A9C4A5 STRING:A9C4A5 Ensembl:ENSDART00000128783
Ensembl:ENSDART00000132584 GeneID:30754 KEGG:dre:30754 CTD:30754
OMA:NTTHEPS NextBio:20807098 Uniprot:A9C4A5
Length = 517
Score = 245 (91.3 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 81/293 (27%), Positives = 144/293 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
H+A +R+GR+P+ EK +++A + N + + A D + + V A+L T
Sbjct: 218 HDA-IRYGRMPEAEKKKLVAGLLAGENPQSSSGA------DLKTLAKHVNTAYLRNLNMT 270
Query: 80 ADKIEPMLRRARE-------HPTYTACPSTLACPLNP-NSHPLQGQQELLQDFSERFSP- 130
K +L H + + N N PL + + + + +
Sbjct: 271 KKKARSILTGKTSCTAPFVIHDMDSLWQAENGLVWNQLNGAPLNKEIGVHVFYRCQCTTV 330
Query: 131 -TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLV 189
T+R++ EFAK IPGF L +DQVTLLK GV E + L + + + ++ NG+ V
Sbjct: 331 ETVRELTEFAKNIPGFVDLFLNDQVTLLKYGVHEAIFAMLPSLMNK--DGLLVANGKGFV 388
Query: 190 -RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVER 246
R+ + S F +M+ F+FA + N L L D+++ LF + +++ R GL N + VE+
Sbjct: 389 TREFLRSLRKPFSEIMEPKFEFAVKFNALELDDSDLALFVAAIILCGDRPGLMNVKQVEQ 448
Query: 247 MR-GKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
++ G L+ + H L +HP+ +L +L+ + DLR L +++ + + TE
Sbjct: 449 IQDGILQALDQH-LQVHHPDSSHLFPKLLQKMADLRQLVTENAQLVQMIKKTE 500
>UNIPROTKB|F1MWQ3 [details] [associations]
symbol:RARA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071391 "cellular response to estrogen stimulus"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0051099 "positive
regulation of binding" evidence=IEA] [GO:0051018 "protein kinase A
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0043422 "protein
kinase B binding" evidence=IEA] [GO:0043277 "apoptotic cell
clearance" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0032754 "positive regulation of interleukin-5
production" evidence=IEA] [GO:0032753 "positive regulation of
interleukin-4 production" evidence=IEA] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=IEA] [GO:0032720
"negative regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=IEA] [GO:0032355 "response to estradiol
stimulus" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030425 "dendrite"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006468
"protein phosphorylation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0001972 "retinoic acid binding" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0003714 GO:GO:0032689 GO:GO:0032355 GO:GO:0046872
GO:GO:0045947 GO:GO:0008284 GO:GO:0043025 GO:GO:0030425
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0006468 GO:GO:0007283 GO:GO:0071222 GO:GO:0000122
GO:GO:0000790 GO:GO:0003713 GO:GO:0032720 GO:GO:0007281
GO:GO:0035264 GO:GO:0030853 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
GO:GO:0001972 GO:GO:0060591 GO:GO:0003708 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
GeneTree:ENSGT00680000099662 KO:K08527 OMA:RTENVCI CTD:5914
GO:GO:0060010 EMBL:DAAA02049130 EMBL:DAAA02049137 EMBL:DAAA02049131
EMBL:DAAA02049132 EMBL:DAAA02049133 EMBL:DAAA02049134
EMBL:DAAA02049135 EMBL:DAAA02049136 IPI:IPI00709635
RefSeq:NP_001014942.2 UniGene:Bt.8306 Ensembl:ENSBTAT00000016586
GeneID:534280 KEGG:bta:534280 NextBio:20876336 Uniprot:F1MWQ3
Length = 462
Score = 243 (90.6 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 65/254 (25%), Positives = 124/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + V + ++ ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|P10276 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001657 "ureteric bud
development" evidence=IEA] [GO:0003417 "growth plate cartilage
development" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0014068 "positive regulation of phosphatidylinositol 3-kinase
cascade" evidence=IEA] [GO:0030425 "dendrite" evidence=IEA]
[GO:0035014 "phosphatidylinositol 3-kinase regulator activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0045947 "negative regulation of translational initiation"
evidence=IEA] [GO:0051897 "positive regulation of protein kinase B
signaling cascade" evidence=IEA] [GO:0055012 "ventricular cardiac
muscle cell differentiation" evidence=IEA] [GO:0060010 "Sertoli
cell fate commitment" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0061037 "negative regulation of
cartilage development" evidence=IEA] [GO:0070374 "positive
regulation of ERK1 and ERK2 cascade" evidence=IEA] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051099 "positive regulation of binding" evidence=IMP]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=IMP;IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0045787 "positive regulation of
cell cycle" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP;IDA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0071391 "cellular response to estrogen
stimulus" evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0071300 "cellular
response to retinoic acid" evidence=IDA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IDA] [GO:0031490 "chromatin
DNA binding" evidence=IDA] [GO:0043277 "apoptotic cell clearance"
evidence=IMP] [GO:0006468 "protein phosphorylation" evidence=IMP]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0043422 "protein kinase B binding" evidence=IPI] [GO:0051018
"protein kinase A binding" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0001972 "retinoic acid binding" evidence=IDA]
[GO:0003708 "retinoic acid receptor activity" evidence=IDA]
[GO:0007165 "signal transduction" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0032355 "response to estradiol stimulus" evidence=IDA]
[GO:0032689 "negative regulation of interferon-gamma production"
evidence=IDA] [GO:0032720 "negative regulation of tumor necrosis
factor production" evidence=IDA] [GO:0032736 "positive regulation
of interleukin-13 production" evidence=IDA] [GO:0032753 "positive
regulation of interleukin-4 production" evidence=IDA] [GO:0032754
"positive regulation of interleukin-5 production" evidence=IDA]
[GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IDA] [GO:0009986 "cell surface"
evidence=IC] [GO:0032526 "response to retinoic acid" evidence=IMP]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0005654 GO:GO:0009986 GO:GO:0032689
GO:GO:0032355 GO:GO:0046872 GO:GO:0045947 GO:GO:0008284
GO:GO:0043025 GO:GO:0030425 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071300 GO:GO:0045944 GO:GO:0005102 GO:GO:0006468
GO:GO:0007283 Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0071222
GO:GO:0000122 GO:GO:0000790 GO:GO:0003713 GO:GO:0032720
GO:GO:0007281 GO:GO:0046982 GO:GO:0035264 GO:GO:0030853
GO:GO:0051018 Pathway_Interaction_DB:retinoic_acid_pathway
DrugBank:DB00459 GO:GO:0006367 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
HOVERGEN:HBG005606 GO:GO:0001972 GO:GO:0060591 GO:GO:0003708
GO:GO:0032736 GO:GO:0032754 GO:GO:0061037 GO:GO:0055012
GO:GO:0044323 PDB:3KMR PDB:4DQM PDBsum:3KMR PDBsum:4DQM PDB:3A9E
PDBsum:3A9E PDB:3KMZ PDBsum:3KMZ EMBL:U41742 EMBL:U41743
Orphanet:520 EMBL:AB067754 DrugBank:DB00523 DrugBank:DB00926
eggNOG:NOG297448 HOGENOM:HOG000010312 KO:K08527 OMA:RTENVCI
CTD:5914 EMBL:X06614 EMBL:X06538 EMBL:AF088895 EMBL:AF088889
EMBL:AF088890 EMBL:AF088891 EMBL:AF088892 EMBL:AF088893
EMBL:AF088894 EMBL:FJ487576 EMBL:AC080112 EMBL:BC008727
EMBL:BC071733 EMBL:X56058 EMBL:X58685 EMBL:AF283809 IPI:IPI00020071
IPI:IPI00218375 IPI:IPI00922641 PIR:A29491 RefSeq:NP_000955.1
RefSeq:NP_001019980.1 RefSeq:NP_001138773.1 RefSeq:NP_001138774.1
UniGene:Hs.654583 PDB:1DKF PDB:1DSZ PDBsum:1DKF PDBsum:1DSZ
ProteinModelPortal:P10276 SMR:P10276 DIP:DIP-34N IntAct:P10276
MINT:MINT-123081 STRING:P10276 PhosphoSite:P10276 DMDM:133483
PaxDb:P10276 PRIDE:P10276 DNASU:5914 Ensembl:ENST00000254066
Ensembl:ENST00000394081 Ensembl:ENST00000394089
Ensembl:ENST00000425707 GeneID:5914 KEGG:hsa:5914 UCSC:uc002huk.2
GeneCards:GC17P038465 HGNC:HGNC:9864 MIM:180240 MIM:612376
neXtProt:NX_P10276 PharmGKB:PA34225 PhylomeDB:P10276
BindingDB:P10276 ChEMBL:CHEMBL2055 ChiTaRS:RARA DrugBank:DB00210
DrugBank:DB00982 DrugBank:DB04942 DrugBank:DB00799
EvolutionaryTrace:P10276 GenomeRNAi:5914 NextBio:23018
ArrayExpress:P10276 Bgee:P10276 CleanEx:HS_RARA
Genevestigator:P10276 GermOnline:ENSG00000131759 GO:GO:0060010
Uniprot:P10276
Length = 462
Score = 243 (90.6 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 65/254 (25%), Positives = 124/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + V + ++ ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|Q8JHU1 [details] [associations]
symbol:LXR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0010867 "positive regulation of
triglyceride biosynthetic process" evidence=IEA] [GO:0010870
"positive regulation of receptor biosynthetic process"
evidence=IEA] [GO:0010875 "positive regulation of cholesterol
efflux" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0032270 "positive regulation
of cellular protein metabolic process" evidence=IEA] [GO:0032369
"negative regulation of lipid transport" evidence=IEA] [GO:0032570
"response to progesterone stimulus" evidence=IEA] [GO:0032810
"sterol response element binding" evidence=IEA] [GO:0034145
"positive regulation of toll-like receptor 4 signaling pathway"
evidence=IEA] [GO:0042632 "cholesterol homeostasis" evidence=IEA]
[GO:0043031 "negative regulation of macrophage activation"
evidence=IEA] [GO:0043277 "apoptotic cell clearance" evidence=IEA]
[GO:0044255 "cellular lipid metabolic process" evidence=IEA]
[GO:0045723 "positive regulation of fatty acid biosynthetic
process" evidence=IEA] [GO:0045861 "negative regulation of
proteolysis" evidence=IEA] [GO:0048550 "negative regulation of
pinocytosis" evidence=IEA] [GO:0050728 "negative regulation of
inflammatory response" evidence=IEA] [GO:0051006 "positive
regulation of lipoprotein lipase activity" evidence=IEA]
[GO:0070328 "triglyceride homeostasis" evidence=IEA] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0090188
"negative regulation of pancreatic juice secretion" evidence=IEA]
[GO:0090341 "negative regulation of secretion of lysosomal enzymes"
evidence=IEA] [GO:2000189 "positive regulation of cholesterol
homeostasis" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0035326 "enhancer binding" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0046872 GO:GO:0050728 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0045861
GO:GO:0044255 GO:GO:0042632 GO:GO:0000122 GO:GO:0051006
GO:GO:0000790 GO:GO:2000189 GO:GO:0070328 GO:GO:0010867
GO:GO:0032570 GO:GO:0032270 GO:GO:0045723 GO:GO:0043031
GO:GO:0043277 GeneTree:ENSGT00680000099585 GO:GO:0010870
GO:GO:0032369 GO:GO:0034145 GO:GO:0035326 GO:GO:0032376
GO:GO:0048550 HOVERGEN:HBG108655 InterPro:IPR023257 PRINTS:PR02034
CTD:10062 KO:K08536 OMA:CILREEA GO:GO:0032810 GO:GO:0090188
GO:GO:0090341 EMBL:AADN02033476 EMBL:AF492498 EMBL:AJ851708
IPI:IPI00601536 RefSeq:NP_989873.1 UniGene:Gga.4130 HSSP:P55055
SMR:Q8JHU1 STRING:Q8JHU1 Ensembl:ENSGALT00000013356 GeneID:395221
KEGG:gga:395221 InParanoid:Q8JHU1 NextBio:20815310 Uniprot:Q8JHU1
Length = 409
Score = 241 (89.9 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 53/194 (27%), Positives = 105/194 (54%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P P+ + + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 201 PQVPDPNNREARQQRFAHFTELAIISVQEIVDFAKQLPGFRELTREDQIALLKTSTIEVM 260
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L RD + +F ++ +F+F++ +N L L+D E L
Sbjct: 261 LLETSRRYNPEIESITFLKDLSYNRDDFAKAGLQFEFINPIFEFSKGMNELQLNDAEYAL 320
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ LVER++ L + N P + ++ L LRTL+
Sbjct: 321 LIAINIFSADRPNVQDQSLVERLQHTYVEALHSYICINRPNDHLMFPRMLMKLVSLRTLS 380
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 381 SVHSEQVFALRLQD 394
>UNIPROTKB|A8MUP8 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 EMBL:CH471152 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
HOVERGEN:HBG005606 GO:GO:0003708 HOGENOM:HOG000010312 EMBL:AC080112
UniGene:Hs.654583 HGNC:HGNC:9864 ChiTaRS:RARA IPI:IPI00014923
SMR:A8MUP8 STRING:A8MUP8 Ensembl:ENST00000394086 Uniprot:A8MUP8
Length = 478
Score = 243 (90.6 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 65/254 (25%), Positives = 124/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + V + ++ ++ + R+ H T+ A C
Sbjct: 163 KCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 222
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 223 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 282
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 283 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 342
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 343 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 402
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 403 ISAKGAERVITLKM 416
>UNIPROTKB|Q13133 [details] [associations]
symbol:NR1H3 "Oxysterols receptor LXR-alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0044255 "cellular lipid metabolic process" evidence=IEA]
[GO:0045861 "negative regulation of proteolysis" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0032810 "sterol response element binding"
evidence=IDA] [GO:0043277 "apoptotic cell clearance" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0032270 "positive regulation of cellular protein
metabolic process" evidence=IMP] [GO:0010875 "positive regulation
of cholesterol efflux" evidence=IDA;IMP] [GO:0045723 "positive
regulation of fatty acid biosynthetic process" evidence=IMP]
[GO:0051006 "positive regulation of lipoprotein lipase activity"
evidence=IMP] [GO:0010745 "negative regulation of macrophage
derived foam cell differentiation" evidence=IC] [GO:0032369
"negative regulation of lipid transport" evidence=IMP] [GO:0048550
"negative regulation of pinocytosis" evidence=IMP] [GO:0032376
"positive regulation of cholesterol transport" evidence=IDA]
[GO:0032570 "response to progesterone stimulus" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0050728
"negative regulation of inflammatory response" evidence=ISS]
[GO:0042632 "cholesterol homeostasis" evidence=ISS] [GO:0055092
"sterol homeostasis" evidence=ISS] [GO:0090341 "negative regulation
of secretion of lysosomal enzymes" evidence=ISS] [GO:0010870
"positive regulation of receptor biosynthetic process"
evidence=IDA] [GO:0034145 "positive regulation of toll-like
receptor 4 signaling pathway" evidence=IDA] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=IDA] [GO:0042752
"regulation of circadian rhythm" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0060336 "negative regulation of
interferon-gamma-mediated signaling pathway" evidence=NAS]
[GO:0055088 "lipid homeostasis" evidence=ISS] [GO:0090188 "negative
regulation of pancreatic juice secretion" evidence=ISS] [GO:2000189
"positive regulation of cholesterol homeostasis" evidence=IDA]
[GO:0043031 "negative regulation of macrophage activation"
evidence=ISS] [GO:0070328 "triglyceride homeostasis" evidence=ISS]
[GO:0010887 "negative regulation of cholesterol storage"
evidence=IMP] [GO:0010867 "positive regulation of triglyceride
biosynthetic process" evidence=IMP] [GO:0015485 "cholesterol
binding" evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0005737 GO:GO:0008286
GO:GO:0045893 GO:GO:0005654 EMBL:CH471064 GO:GO:0046872
GO:GO:0050728 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0045861 GO:GO:0044255 GO:GO:0042752
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0015485 GO:GO:0071222
GO:GO:0042632 GO:GO:0010887 GO:GO:0010745 GO:GO:0010875
GO:GO:0000122 GO:GO:0051006 GO:GO:0044212 GO:GO:0000790
GO:GO:0003713 GO:GO:2000189 GO:GO:0070328 GO:GO:0010867
GO:GO:0032570 GO:GO:0032270 Orphanet:803 GO:GO:0006367
GO:GO:0045723 GO:GO:0043031 GO:GO:0043277 GO:GO:0060336
eggNOG:NOG285805 GO:GO:0010870 GO:GO:0032369 GO:GO:0034145
EMBL:AC018410 PDB:3IPQ PDB:3IPS PDB:3IPU PDBsum:3IPQ PDBsum:3IPS
PDBsum:3IPU PDB:1UHL PDBsum:1UHL GO:GO:0048550 HOVERGEN:HBG108655
InterPro:IPR023257 PRINTS:PR02034 HOGENOM:HOG000220845 CTD:10062
KO:K08536 OMA:CILREEA GO:GO:0032810 GO:GO:0090188 GO:GO:0090341
EMBL:U22662 EMBL:AK290614 EMBL:BC008819 EMBL:BC041172
IPI:IPI00220134 IPI:IPI00301894 IPI:IPI00796145 PIR:I38975
RefSeq:NP_001123573.1 RefSeq:NP_001123574.1 RefSeq:NP_005684.2
UniGene:Hs.438863 ProteinModelPortal:Q13133 SMR:Q13133
IntAct:Q13133 STRING:Q13133 PhosphoSite:Q13133 DMDM:23503089
PaxDb:Q13133 PRIDE:Q13133 DNASU:10062 Ensembl:ENST00000395397
Ensembl:ENST00000405853 Ensembl:ENST00000407404
Ensembl:ENST00000441012 Ensembl:ENST00000467728 GeneID:10062
KEGG:hsa:10062 UCSC:uc001nek.3 UCSC:uc001nen.4
GeneCards:GC11P047269 HGNC:HGNC:7966 HPA:CAB037109 HPA:HPA036443
MIM:602423 neXtProt:NX_Q13133 PharmGKB:PA31751 InParanoid:Q13133
PhylomeDB:Q13133 BindingDB:Q13133 ChEMBL:CHEMBL2808
EvolutionaryTrace:Q13133 GenomeRNAi:10062 NextBio:38029
ArrayExpress:Q13133 Bgee:Q13133 CleanEx:HS_NR1H3
Genevestigator:Q13133 GermOnline:ENSG00000025434 Uniprot:Q13133
Length = 447
Score = 241 (89.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 51/194 (26%), Positives = 105/194 (54%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ H + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 239 PMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 298
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 299 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFAL 358
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ +HP + ++ L LRTL+
Sbjct: 359 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLS 418
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 419 SVHSEQVFALRLQD 432
>UNIPROTKB|F1NWE8 [details] [associations]
symbol:RARB "Retinoic acid receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:AADN02001127 EMBL:AADN02001120
EMBL:AADN02001121 EMBL:AADN02001122 EMBL:AADN02001123
EMBL:AADN02001124 EMBL:AADN02001125 EMBL:AADN02001126
IPI:IPI00681960 ProteinModelPortal:F1NWE8
Ensembl:ENSGALT00000018430 ArrayExpress:F1NWE8 Uniprot:F1NWE8
Length = 368
Score = 237 (88.5 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 50/162 (30%), Positives = 93/162 (57%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++M +G L R +H
Sbjct: 178 IVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 237
Query: 195 SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENM 254
++ L D +F FA +L L + DTE GL S+I +I R L V++++ L
Sbjct: 238 NAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPMKVDKLQEPLLEA 297
Query: 255 LMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 298 LKIYIRKRRPNKPHMFPKILMKITDLRSISAKGAERVITLKM 339
>UNIPROTKB|D4A6Q3 [details] [associations]
symbol:Rara "Protein Rara" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3534 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708 IPI:IPI00949177
Ensembl:ENSRNOT00000065435 ArrayExpress:D4A6Q3 Uniprot:D4A6Q3
Length = 406
Score = 239 (89.2 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 64/254 (25%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 91 KCFEVGMSKESVRNDRNKKKKETPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 150
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 151 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 210
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 211 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 270
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 271 GLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 330
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 331 ISAKGAERVITLKM 344
>UNIPROTKB|Q499N1 [details] [associations]
symbol:Rara "Protein Rara" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001657 "ureteric bud development"
evidence=IEA] [GO:0001972 "retinoic acid binding" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0003708 "retinoic acid receptor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0014068 "positive regulation of
phosphatidylinositol 3-kinase cascade" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IEA] [GO:0030425
"dendrite" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030853 "negative
regulation of granulocyte differentiation" evidence=IEA]
[GO:0031490 "chromatin DNA binding" evidence=IEA] [GO:0032355
"response to estradiol stimulus" evidence=IEA] [GO:0032689
"negative regulation of interferon-gamma production" evidence=IEA]
[GO:0032720 "negative regulation of tumor necrosis factor
production" evidence=IEA] [GO:0032736 "positive regulation of
interleukin-13 production" evidence=IEA] [GO:0032753 "positive
regulation of interleukin-4 production" evidence=IEA] [GO:0032754
"positive regulation of interleukin-5 production" evidence=IEA]
[GO:0035014 "phosphatidylinositol 3-kinase regulator activity"
evidence=IMP] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0043277 "apoptotic cell clearance" evidence=IEA] [GO:0043422
"protein kinase B binding" evidence=IEA] [GO:0043551 "regulation of
phosphatidylinositol 3-kinase activity" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0045630
"positive regulation of T-helper 2 cell differentiation"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045947
"negative regulation of translational initiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0051018 "protein kinase A binding" evidence=IEA] [GO:0051099
"positive regulation of binding" evidence=IEA] [GO:0051897
"positive regulation of protein kinase B signaling cascade"
evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0061037 "negative regulation of
cartilage development" evidence=IEA] [GO:0070374 "positive
regulation of ERK1 and ERK2 cascade" evidence=IMP] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0071300
"cellular response to retinoic acid" evidence=IEA] [GO:0071391
"cellular response to estrogen stimulus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003078 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3534 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0070374 GO:GO:0014068 GO:GO:0051897
EMBL:CH473948 HOVERGEN:HBG005606 GO:GO:0035014 GO:GO:0003708
eggNOG:NOG297448 GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312
KO:K08527 CTD:5914 UniGene:Rn.91057 EMBL:BC099830 IPI:IPI00212283
RefSeq:NP_113716.2 SMR:Q499N1 STRING:Q499N1
Ensembl:ENSRNOT00000008659 GeneID:24705 KEGG:rno:24705
ChEMBL:CHEMBL2269 NextBio:604175 Genevestigator:Q499N1
Uniprot:Q499N1
Length = 459
Score = 239 (89.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 64/254 (25%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 144 KCFEVGMSKESVRNDRNKKKKETPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 203
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 323
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 324 GLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 383
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 384 ISAKGAERVITLKM 397
>UNIPROTKB|F1PN49 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003708
GeneTree:ENSGT00680000099662 EMBL:AAEX03006463 EMBL:AAEX03006464
EMBL:AAEX03006465 ProteinModelPortal:F1PN49
Ensembl:ENSCAFT00000011311 Uniprot:F1PN49
Length = 462
Score = 239 (89.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 64/254 (25%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|F1RXC9 [details] [associations]
symbol:RARA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071391 "cellular response to estrogen stimulus"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0061037 "negative regulation of cartilage
development" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0051099 "positive
regulation of binding" evidence=IEA] [GO:0051018 "protein kinase A
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0043422 "protein
kinase B binding" evidence=IEA] [GO:0043277 "apoptotic cell
clearance" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0032754 "positive regulation of interleukin-5
production" evidence=IEA] [GO:0032753 "positive regulation of
interleukin-4 production" evidence=IEA] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=IEA] [GO:0032720
"negative regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=IEA] [GO:0032355 "response to estradiol
stimulus" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030425 "dendrite"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006468
"protein phosphorylation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0001972 "retinoic acid binding" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0003714 GO:GO:0032689 GO:GO:0032355 GO:GO:0046872
GO:GO:0045947 GO:GO:0008284 GO:GO:0043025 GO:GO:0030425
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0006468 GO:GO:0007283 GO:GO:0071222 GO:GO:0000122
GO:GO:0000790 GO:GO:0003713 GO:GO:0032720 GO:GO:0007281
GO:GO:0035264 GO:GO:0030853 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
GO:GO:0001972 GO:GO:0060591 GO:GO:0003708 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
GeneTree:ENSGT00680000099662 KO:K08527 OMA:RTENVCI GO:GO:0060010
EMBL:CU928542 RefSeq:XP_003131522.1 RefSeq:XP_003358102.1
UniGene:Ssc.15829 Ensembl:ENSSSCT00000019026 GeneID:396709
KEGG:ssc:396709 ArrayExpress:F1RXC9 Uniprot:F1RXC9
Length = 462
Score = 239 (89.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 64/254 (25%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>UNIPROTKB|G3V956 [details] [associations]
symbol:Rara "Protein Rara" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3534 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 EMBL:CH473948 GO:GO:0003708
OMA:RTENVCI UniGene:Rn.91057 Ensembl:ENSRNOT00000036872
Uniprot:G3V956
Length = 462
Score = 239 (89.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 64/254 (25%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKETPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>RGD|61909 [details] [associations]
symbol:Nr1h3 "nuclear receptor subfamily 1, group H, member 3"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000790 "nuclear chromatin" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0003707
"steroid hormone receptor activity" evidence=IEA;TAS] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006629 "lipid metabolic process" evidence=IEP] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008286 "insulin receptor
signaling pathway" evidence=IEP] [GO:0010867 "positive regulation of
triglyceride biosynthetic process" evidence=IEA;ISO] [GO:0010870
"positive regulation of receptor biosynthetic process"
evidence=IEA;ISO] [GO:0010875 "positive regulation of cholesterol
efflux" evidence=IEA;ISO] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA;ISO] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=ISO] [GO:0032270
"positive regulation of cellular protein metabolic process"
evidence=IEA;ISO] [GO:0032369 "negative regulation of lipid
transport" evidence=IEA;ISO] [GO:0032376 "positive regulation of
cholesterol transport" evidence=ISO] [GO:0032570 "response to
progesterone stimulus" evidence=IEA;ISO] [GO:0032810 "sterol
response element binding" evidence=IEA;ISO] [GO:0034145 "positive
regulation of toll-like receptor 4 signaling pathway"
evidence=IEA;ISO] [GO:0042632 "cholesterol homeostasis"
evidence=IEA;ISO] [GO:0043031 "negative regulation of macrophage
activation" evidence=IEA;ISO] [GO:0043277 "apoptotic cell clearance"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0044255 "cellular lipid metabolic
process" evidence=IEA;ISO] [GO:0045723 "positive regulation of fatty
acid biosynthetic process" evidence=IEA;ISO] [GO:0045861 "negative
regulation of proteolysis" evidence=IEA;ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046965 "retinoid
X receptor binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IDA] [GO:0048550 "negative
regulation of pinocytosis" evidence=IEA;ISO] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA;ISO] [GO:0051006
"positive regulation of lipoprotein lipase activity"
evidence=IEA;ISO] [GO:0055088 "lipid homeostasis" evidence=ISO]
[GO:0055092 "sterol homeostasis" evidence=ISO] [GO:0070328
"triglyceride homeostasis" evidence=IEA;ISO] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=IEA;ISO] [GO:0090188
"negative regulation of pancreatic juice secretion"
evidence=IEA;ISO] [GO:0090341 "negative regulation of secretion of
lysosomal enzymes" evidence=IEA;ISO] [GO:2000189 "positive
regulation of cholesterol homeostasis" evidence=IEA;ISO]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:61909 GO:GO:0005634 GO:GO:0005737
GO:GO:0008286 GO:GO:0045893 GO:GO:0046872 GO:GO:0050728
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006629
GO:GO:0045861 GO:GO:0044255 GO:GO:0042632 GO:GO:0000122
GO:GO:0051006 GO:GO:0000790 GO:GO:2000189 GO:GO:0070328
GO:GO:0010867 GO:GO:0046982 GO:GO:0032570 GO:GO:0032270
GO:GO:0045723 GO:GO:0043031 GO:GO:0043277 eggNOG:NOG285805
GO:GO:0010870 GO:GO:0032369 GO:GO:0034145 GO:GO:0032376
GO:GO:0048550 HOVERGEN:HBG108655 OrthoDB:EOG4DV5M7
InterPro:IPR023257 PRINTS:PR02034 HOGENOM:HOG000220845 GO:GO:0032810
GO:GO:0090188 GO:GO:0090341 EMBL:U11685 IPI:IPI00207179 PIR:A56043
UniGene:Rn.11209 ProteinModelPortal:Q62685 SMR:Q62685 STRING:Q62685
PhosphoSite:Q62685 PRIDE:Q62685 UCSC:RGD:61909 InParanoid:Q62685
ArrayExpress:Q62685 Genevestigator:Q62685
GermOnline:ENSRNOG00000013172 Uniprot:Q62685
Length = 445
Score = 238 (88.8 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 51/194 (26%), Positives = 104/194 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 237 PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 296
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 297 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRSMNELQLNDAEFAL 356
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ NHP + ++ L LRTL+
Sbjct: 357 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDRLMFPRMLMKLVSLRTLS 416
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 417 SVHSEQVFALRLQD 430
>UNIPROTKB|Q62685 [details] [associations]
symbol:Nr1h3 "Oxysterols receptor LXR-alpha" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:61909 GO:GO:0005634 GO:GO:0005737
GO:GO:0008286 GO:GO:0045893 GO:GO:0046872 GO:GO:0050728
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006629
GO:GO:0045861 GO:GO:0044255 GO:GO:0042632 GO:GO:0000122
GO:GO:0051006 GO:GO:0000790 GO:GO:2000189 GO:GO:0070328
GO:GO:0010867 GO:GO:0046982 GO:GO:0032570 GO:GO:0032270
GO:GO:0045723 GO:GO:0043031 GO:GO:0043277 eggNOG:NOG285805
GO:GO:0010870 GO:GO:0032369 GO:GO:0034145 GO:GO:0032376
GO:GO:0048550 HOVERGEN:HBG108655 OrthoDB:EOG4DV5M7
InterPro:IPR023257 PRINTS:PR02034 HOGENOM:HOG000220845
GO:GO:0032810 GO:GO:0090188 GO:GO:0090341 EMBL:U11685
IPI:IPI00207179 PIR:A56043 UniGene:Rn.11209
ProteinModelPortal:Q62685 SMR:Q62685 STRING:Q62685
PhosphoSite:Q62685 PRIDE:Q62685 UCSC:RGD:61909 InParanoid:Q62685
ArrayExpress:Q62685 Genevestigator:Q62685
GermOnline:ENSRNOG00000013172 Uniprot:Q62685
Length = 445
Score = 238 (88.8 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 51/194 (26%), Positives = 104/194 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 237 PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 296
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 297 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRSMNELQLNDAEFAL 356
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ NHP + ++ L LRTL+
Sbjct: 357 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDRLMFPRMLMKLVSLRTLS 416
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 417 SVHSEQVFALRLQD 430
>UNIPROTKB|E2R2V0 [details] [associations]
symbol:RARA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071391 "cellular response to estrogen
stimulus" evidence=IEA] [GO:0071300 "cellular response to retinoic
acid" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0061037 "negative regulation
of cartilage development" evidence=IEA] [GO:0060591 "chondroblast
differentiation" evidence=IEA] [GO:0060010 "Sertoli cell fate
commitment" evidence=IEA] [GO:0055012 "ventricular cardiac muscle
cell differentiation" evidence=IEA] [GO:0051099 "positive
regulation of binding" evidence=IEA] [GO:0051018 "protein kinase A
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045787 "positive regulation of cell cycle"
evidence=IEA] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0043422 "protein
kinase B binding" evidence=IEA] [GO:0043277 "apoptotic cell
clearance" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0032754 "positive regulation of interleukin-5
production" evidence=IEA] [GO:0032753 "positive regulation of
interleukin-4 production" evidence=IEA] [GO:0032736 "positive
regulation of interleukin-13 production" evidence=IEA] [GO:0032720
"negative regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032689 "negative regulation of interferon-gamma
production" evidence=IEA] [GO:0032355 "response to estradiol
stimulus" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0030853 "negative regulation of granulocyte
differentiation" evidence=IEA] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=IEA] [GO:0030425 "dendrite"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006468
"protein phosphorylation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003417 "growth plate cartilage development" evidence=IEA]
[GO:0001972 "retinoic acid binding" evidence=IEA] [GO:0001657
"ureteric bud development" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003708 "retinoic
acid receptor activity" evidence=IEA] [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005737
GO:GO:0003714 GO:GO:0032689 GO:GO:0032355 GO:GO:0046872
GO:GO:0045947 GO:GO:0008284 GO:GO:0043025 GO:GO:0030425
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0006468 GO:GO:0007283 GO:GO:0071222 GO:GO:0000122
GO:GO:0000790 GO:GO:0003713 GO:GO:0032720 GO:GO:0007281
GO:GO:0035264 GO:GO:0030853 GO:GO:0051099 GO:GO:0031490
GO:GO:0001657 GO:GO:0030520 GO:GO:0045787 GO:GO:0071391
GO:GO:0043277 GO:GO:0032753 GO:GO:0045630 GO:GO:0003417
GO:GO:0001972 GO:GO:0060591 GO:GO:0003708 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
GeneTree:ENSGT00680000099662 OMA:RTENVCI GO:GO:0060010
EMBL:AAEX03006463 EMBL:AAEX03006464 EMBL:AAEX03006465
Ensembl:ENSCAFT00000035664 Uniprot:E2R2V0
Length = 486
Score = 239 (89.2 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 64/254 (25%), Positives = 123/254 (48%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 171 KCFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 230
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 231 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 290
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M +G L R +H++ L D +F FA +L L + D E
Sbjct: 291 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET 350
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 351 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 410
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 411 ISAKGAERVITLKM 424
>MGI|MGI:97856 [details] [associations]
symbol:Rara "retinoic acid receptor, alpha" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IGI;IDA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=ISO] [GO:0001657 "ureteric
bud development" evidence=IMP] [GO:0001972 "retinoic acid binding"
evidence=ISO] [GO:0003417 "growth plate cartilage development"
evidence=IGI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IDA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=ISO;IDA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003714 "transcription corepressor activity"
evidence=ISO] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0007165 "signal transduction" evidence=ISO] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISO;IPI] [GO:0008144 "drug binding" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO;IGI] [GO:0008285
"negative regulation of cell proliferation" evidence=ISO]
[GO:0008584 "male gonad development" evidence=ISO] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0010629
"negative regulation of gene expression" evidence=IGI] [GO:0017148
"negative regulation of translation" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO;IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:0030522 "intracellular receptor mediated
signaling pathway" evidence=IDA] [GO:0030852 "regulation of
granulocyte differentiation" evidence=IMP] [GO:0030853 "negative
regulation of granulocyte differentiation" evidence=ISO]
[GO:0031490 "chromatin DNA binding" evidence=ISO] [GO:0031641
"regulation of myelination" evidence=ISO] [GO:0032355 "response to
estradiol stimulus" evidence=ISO] [GO:0032526 "response to retinoic
acid" evidence=ISO;IMP] [GO:0032689 "negative regulation of
interferon-gamma production" evidence=ISO] [GO:0032720 "negative
regulation of tumor necrosis factor production" evidence=ISO]
[GO:0032736 "positive regulation of interleukin-13 production"
evidence=ISO] [GO:0032753 "positive regulation of interleukin-4
production" evidence=ISO] [GO:0032754 "positive regulation of
interleukin-5 production" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=IGI] [GO:0042981 "regulation of apoptotic
process" evidence=ISO] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=IDA]
[GO:0043277 "apoptotic cell clearance" evidence=ISO] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0043422 "protein kinase B binding" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IGI;IDA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IMP]
[GO:0044323 "retinoic acid-responsive element binding"
evidence=ISO] [GO:0045471 "response to ethanol" evidence=ISO]
[GO:0045596 "negative regulation of cell differentiation"
evidence=IMP] [GO:0045630 "positive regulation of T-helper 2 cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=ISO] [GO:0045787 "positive
regulation of cell cycle" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IGI] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] [GO:0048167 "regulation of synaptic
plasticity" evidence=ISO] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO;IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISO] [GO:0051018 "protein kinase A
binding" evidence=ISO] [GO:0051099 "positive regulation of binding"
evidence=ISO] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IMP] [GO:0060010 "Sertoli cell fate
commitment" evidence=IMP] [GO:0060591 "chondroblast
differentiation" evidence=IMP] [GO:0061037 "negative regulation of
cartilage development" evidence=IMP] [GO:0071222 "cellular response
to lipopolysaccharide" evidence=IDA] [GO:0071300 "cellular response
to retinoic acid" evidence=ISO] [GO:0071391 "cellular response to
estrogen stimulus" evidence=ISO] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:97856
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0032689 GO:GO:0032355 GO:GO:0046872 GO:GO:0045947
GO:GO:0008284 GO:GO:0043025 GO:GO:0030425 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944 GO:GO:0006468
GO:GO:0007283 GO:GO:0071222 GO:GO:0000122 GO:GO:0044212
GO:GO:0000790 GO:GO:0003713 GO:GO:0032526 GO:GO:0032720
GO:GO:0007281 GO:GO:0035264 GO:GO:0030853 GO:GO:0010628
GO:GO:0051099 GO:GO:0031490 GO:GO:0001657 GO:GO:0030520
GO:GO:0045787 GO:GO:0071391 GO:GO:0043277 GO:GO:0032753
GO:GO:0045630 GO:GO:0003417 HOVERGEN:HBG005606 GO:GO:0001972
GO:GO:0060591 GO:GO:0003708 GO:GO:0045596 GO:GO:0032736
GO:GO:0032754 GO:GO:0061037 GO:GO:0055012 GO:GO:0044323
eggNOG:NOG297448 GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312
KO:K08527 OMA:RTENVCI OrthoDB:EOG4F7NK7 CTD:5914 GO:GO:0060010
EMBL:X56572 EMBL:X56565 EMBL:S56656 EMBL:X57528 EMBL:M60909
EMBL:BC010216 IPI:IPI00114447 IPI:IPI00223075 PIR:S05050
RefSeq:NP_001169999.1 RefSeq:NP_001170773.1 RefSeq:NP_001170774.1
RefSeq:NP_033050.2 UniGene:Mm.439744 ProteinModelPortal:P11416
SMR:P11416 DIP:DIP-31480N IntAct:P11416 MINT:MINT-5210296
STRING:P11416 PhosphoSite:P11416 PRIDE:P11416
Ensembl:ENSMUST00000068133 Ensembl:ENSMUST00000107473
Ensembl:ENSMUST00000107474 Ensembl:ENSMUST00000107475
Ensembl:ENSMUST00000164748 GeneID:19401 KEGG:mmu:19401
UCSC:uc007lhz.2 InParanoid:P11416 BindingDB:P11416
ChEMBL:CHEMBL2792 NextBio:296513 Bgee:P11416 CleanEx:MM_RARA
Genevestigator:P11416 GermOnline:ENSMUSG00000037992 GO:GO:0030852
Uniprot:P11416
Length = 462
Score = 238 (88.8 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLKA ++L++R+ + + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA +L L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ V+ ++ L L + + P + ++ +++ + DLR+++ +E+++ +M
Sbjct: 343 EQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
>MGI|MGI:1352462 [details] [associations]
symbol:Nr1h3 "nuclear receptor subfamily 1, group H, member
3" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006633 "fatty acid
biosynthetic process" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010867 "positive regulation of triglyceride
biosynthetic process" evidence=ISO] [GO:0010870 "positive
regulation of receptor biosynthetic process" evidence=ISO]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=ISO;IDA] [GO:0010887 "negative regulation of cholesterol
storage" evidence=ISO;IGI] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=IDA] [GO:0032270 "positive
regulation of cellular protein metabolic process" evidence=ISO]
[GO:0032369 "negative regulation of lipid transport" evidence=ISO]
[GO:0032376 "positive regulation of cholesterol transport"
evidence=ISO] [GO:0032570 "response to progesterone stimulus"
evidence=ISO] [GO:0032810 "sterol response element binding"
evidence=ISO] [GO:0034145 "positive regulation of toll-like
receptor 4 signaling pathway" evidence=ISO] [GO:0042632
"cholesterol homeostasis" evidence=IGI] [GO:0043031 "negative
regulation of macrophage activation" evidence=IDA] [GO:0043277
"apoptotic cell clearance" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO;IDA]
[GO:0044255 "cellular lipid metabolic process" evidence=IDA]
[GO:0045723 "positive regulation of fatty acid biosynthetic
process" evidence=ISO] [GO:0045861 "negative regulation of
proteolysis" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0048550 "negative regulation of pinocytosis"
evidence=ISO] [GO:0050728 "negative regulation of inflammatory
response" evidence=IDA] [GO:0051006 "positive regulation of
lipoprotein lipase activity" evidence=ISO] [GO:0055088 "lipid
homeostasis" evidence=IGI;IMP] [GO:0055092 "sterol homeostasis"
evidence=IMP] [GO:0070328 "triglyceride homeostasis"
evidence=IGI;IMP] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO;IDA] [GO:0090188 "negative
regulation of pancreatic juice secretion" evidence=IMP] [GO:0090341
"negative regulation of secretion of lysosomal enzymes"
evidence=IMP] [GO:2000189 "positive regulation of cholesterol
homeostasis" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
MGI:MGI:1352462 GO:GO:0005634 GO:GO:0005737 GO:GO:0008286
GO:GO:0046872 GO:GO:0003677 GO:GO:0050728 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0045861
GO:GO:0006633 GO:GO:0071222 GO:GO:0042632 GO:GO:0010887
GO:GO:0010875 GO:GO:0000122 GO:GO:0051006 GO:GO:0000790
GO:GO:2000189 GO:GO:0070328 GO:GO:0010867 GO:GO:0032570
GO:GO:0032270 GO:GO:0045723 GO:GO:0043031 GO:GO:0043277
eggNOG:NOG285805 GeneTree:ENSGT00680000099585 GO:GO:0010870
GO:GO:0032369 GO:GO:0034145 EMBL:AL691450 GO:GO:0048550
HOVERGEN:HBG108655 OrthoDB:EOG4DV5M7 InterPro:IPR023257
PRINTS:PR02034 HOGENOM:HOG000220845 CTD:10062 KO:K08536 OMA:CILREEA
GO:GO:0032810 GO:GO:0090188 GO:GO:0090341 EMBL:AJ132599
EMBL:AJ132600 EMBL:AJ132601 EMBL:AF085745 IPI:IPI00129650
RefSeq:NP_001171201.1 RefSeq:NP_038867.2 UniGene:Mm.22690 PDB:2ACL
PDB:3FAL PDB:3FC6 PDBsum:2ACL PDBsum:3FAL PDBsum:3FC6
ProteinModelPortal:Q9Z0Y9 SMR:Q9Z0Y9 IntAct:Q9Z0Y9 STRING:Q9Z0Y9
PhosphoSite:Q9Z0Y9 PRIDE:Q9Z0Y9 Ensembl:ENSMUST00000002177
Ensembl:ENSMUST00000111354 Ensembl:ENSMUST00000111356 GeneID:22259
KEGG:mmu:22259 InParanoid:Q9Z0Y9 EvolutionaryTrace:Q9Z0Y9
NextBio:302349 Bgee:Q9Z0Y9 CleanEx:MM_NR1H3 Genevestigator:Q9Z0Y9
GermOnline:ENSMUSG00000002108 Uniprot:Q9Z0Y9
Length = 445
Score = 237 (88.5 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 51/194 (26%), Positives = 104/194 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 237 PIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 296
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 297 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFAL 356
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ NHP + ++ L LRTL+
Sbjct: 357 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLRTLS 416
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 417 SVHSEQVFALRLQD 430
>UNIPROTKB|Q5FBR4 [details] [associations]
symbol:RARA "Retinoic acid receptor alpha" species:9615
"Canis lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448
HOGENOM:HOG000010312 KO:K08527 EMBL:AB179779 RefSeq:NP_001012663.1
UniGene:Cfa.45823 ProteinModelPortal:Q5FBR4 SMR:Q5FBR4
STRING:Q5FBR4 GeneID:480526 KEGG:cfa:480526 CTD:5914
NextBio:20855534 Uniprot:Q5FBR4
Length = 462
Score = 237 (88.5 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 64/254 (25%), Positives = 121/254 (47%)
Query: 48 KCTEKALAAEL--DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRARE-HP-TYTA-CPST 102
KC E ++ E +D + + ++ ++ + R+ H T+ A C
Sbjct: 147 KCFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG 206
Query: 103 LACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVF 162
N + + +L FSE + I VEFAK++PGF+ L DQ+TLLKA
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 163 EVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEI 222
++L++R+ + + ++M G L R +H + L D +F FA +L L + D E
Sbjct: 267 DILILRICTRYTPEQDTMTFSEGLTLNRTQMHKAGFGPLTDLVFAFANQLLPLEMDDAET 326
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
GL S+I +I R L + V+ ++ L L + + P + ++ +++ + DLR+
Sbjct: 327 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 386
Query: 283 LNQLHSEKLVAFQM 296
++ +E+++ +M
Sbjct: 387 ISAKGAERVITLKM 400
>ZFIN|ZDB-GENE-070314-1 [details] [associations]
symbol:rargb "retinoic acid receptor, gamma b"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IEA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-070314-1 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
HOVERGEN:HBG005606 GO:GO:0003708 eggNOG:NOG297448 OrthoDB:EOG4F7NK7
EMBL:EF028131 IPI:IPI00679293 RefSeq:NP_001076779.1
UniGene:Dr.135572 ProteinModelPortal:A2T928 SMR:A2T928
STRING:A2T928 GeneID:100034753 KEGG:dre:100034753 CTD:100034753
NextBio:20788475 Uniprot:A2T928
Length = 489
Score = 236 (88.1 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 56/185 (30%), Positives = 98/185 (52%)
Query: 112 HPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLAC 171
H +Q L FSE + I +VEFAKR+PGF+ L DQ+TLLK+ ++L++R+
Sbjct: 194 HRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTSLTIADQITLLKSACLDILMLRICT 253
Query: 172 MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ + ++M +G L R +H++ L D +F FA +L L + DTE GL S+I +I
Sbjct: 254 RYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 313
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L V++++ L L + P + ++ ++ + DLR ++ +E+
Sbjct: 314 CGDRMDLEEPHRVDQLQEPLLEALKIYARRRRPNKPHMFPRMLMKVTDLRGISTKGAERA 373
Query: 292 VAFQM 296
+ +M
Sbjct: 374 ITLKM 378
>ZFIN|ZDB-GENE-980526-284 [details] [associations]
symbol:raraa "retinoic acid receptor, alpha a"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IEA;IDA] [GO:0003708 "retinoic acid receptor activity"
evidence=IEA;IDA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0032526
"response to retinoic acid" evidence=IDA] [GO:0021575 "hindbrain
morphogenesis" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR003078 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-284 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0032526
GO:GO:0021575 HOVERGEN:HBG005606 GO:GO:0003708 EMBL:S74155
EMBL:L03398 EMBL:BC092692 IPI:IPI00505878 PIR:I51256
RefSeq:NP_571481.2 UniGene:Dr.193 HSSP:P10276
ProteinModelPortal:Q90271 SMR:Q90271 STRING:Q90271
Ensembl:ENSDART00000079336 GeneID:30680 KEGG:dre:30680 CTD:30680
eggNOG:NOG297448 GeneTree:ENSGT00680000099662 HOGENOM:HOG000010312
InParanoid:Q90271 KO:K08527 OMA:RTENVCI OrthoDB:EOG4F7NK7
NextBio:20807033 ArrayExpress:Q90271 Bgee:Q90271 Uniprot:Q90271
Length = 444
Score = 236 (88.1 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 58/211 (27%), Positives = 112/211 (53%)
Query: 87 LRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFS 146
+R+A + + C N + + +L FSE + I VEFAK++PGF+
Sbjct: 178 VRKAHQETFPSLCQLGKYTTSNSSERRVALDVDLWDKFSELSTKCIIKTVEFAKQLPGFT 237
Query: 147 LLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMF 206
L DQ+TLLKA ++L++R+ + + ++M +G L R +H++ L D +F
Sbjct: 238 TLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF 297
Query: 207 DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKL-ENMLMHVLNQNHPE 265
FA +L L + D E GL S+I ++ R L + V+ ++ L E + ++V N+ P
Sbjct: 298 AFANQLLPLEMDDAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKIYVRNRR-PH 356
Query: 266 QMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ ++ +++ + DLR+++ +E+++ +M
Sbjct: 357 KPHMFPKMLMKITDLRSISAKGAERVITLKM 387
Score = 40 (19.1 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 42 QQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDT 75
++ +CTE + D ++M+ V +AH +T
Sbjct: 154 KEEKKPECTENYTLSP--DTEQMIDRVRKAHQET 185
>UNIPROTKB|Q5E9B6 [details] [associations]
symbol:NR1H3 "Oxysterols receptor LXR-alpha" species:9913
"Bos taurus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0044255 "cellular
lipid metabolic process" evidence=ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0046965 "retinoid X receptor binding"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] [GO:2000189 "positive regulation of cholesterol
homeostasis" evidence=IEA] [GO:0090341 "negative regulation of
secretion of lysosomal enzymes" evidence=IEA] [GO:0090188 "negative
regulation of pancreatic juice secretion" evidence=IEA] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0070328
"triglyceride homeostasis" evidence=IEA] [GO:0051006 "positive
regulation of lipoprotein lipase activity" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0048550 "negative regulation of pinocytosis"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045861
"negative regulation of proteolysis" evidence=IEA] [GO:0045723
"positive regulation of fatty acid biosynthetic process"
evidence=IEA] [GO:0043277 "apoptotic cell clearance" evidence=IEA]
[GO:0043031 "negative regulation of macrophage activation"
evidence=IEA] [GO:0042632 "cholesterol homeostasis" evidence=IEA]
[GO:0034145 "positive regulation of toll-like receptor 4 signaling
pathway" evidence=IEA] [GO:0032810 "sterol response element
binding" evidence=IEA] [GO:0032570 "response to progesterone
stimulus" evidence=IEA] [GO:0032369 "negative regulation of lipid
transport" evidence=IEA] [GO:0032270 "positive regulation of
cellular protein metabolic process" evidence=IEA] [GO:0010887
"negative regulation of cholesterol storage" evidence=IEA]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=IEA] [GO:0010870 "positive regulation of receptor
biosynthetic process" evidence=IEA] [GO:0010867 "positive
regulation of triglyceride biosynthetic process" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0045892
GO:GO:0045893 GO:GO:0046872 GO:GO:0050728 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045861 GO:GO:0044255
GO:GO:0042632 GO:GO:0000122 GO:GO:0051006 GO:GO:0000790
GO:GO:2000189 GO:GO:0070328 GO:GO:0010867 GO:GO:0032570
GO:GO:0032270 GO:GO:0045723 GO:GO:0046965 GO:GO:0043031
GO:GO:0043277 eggNOG:NOG285805 GeneTree:ENSGT00680000099585
GO:GO:0010870 GO:GO:0032369 GO:GO:0034145 GO:GO:0032376
GO:GO:0048550 HOVERGEN:HBG108655 OrthoDB:EOG4DV5M7
InterPro:IPR023257 PRINTS:PR02034 HOGENOM:HOG000220845
EMBL:BT021004 EMBL:BC103207 IPI:IPI00716440 RefSeq:NP_001014861.1
UniGene:Bt.88106 ProteinModelPortal:Q5E9B6 SMR:Q5E9B6 STRING:Q5E9B6
PRIDE:Q5E9B6 Ensembl:ENSBTAT00000014131 GeneID:507176
KEGG:bta:507176 CTD:10062 InParanoid:Q5E9B6 KO:K08536 OMA:CILREEA
NextBio:20867938 GO:GO:0032810 GO:GO:0090188 GO:GO:0090341
Uniprot:Q5E9B6
Length = 447
Score = 233 (87.1 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 50/194 (25%), Positives = 104/194 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 239 PMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 298
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 299 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFAL 358
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ +HP + ++ L LRTL+
Sbjct: 359 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLS 418
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 419 SVHSEQVFALRLQD 432
>UNIPROTKB|Q4TU03 [details] [associations]
symbol:LXRA "Liver X receptor alpha" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0046965
"retinoid X receptor binding" evidence=ISS] [GO:0044255 "cellular
lipid metabolic process" evidence=ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:2000189 "positive
regulation of cholesterol homeostasis" evidence=IEA] [GO:0090341
"negative regulation of secretion of lysosomal enzymes"
evidence=IEA] [GO:0090188 "negative regulation of pancreatic juice
secretion" evidence=IEA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0070328 "triglyceride
homeostasis" evidence=IEA] [GO:0051006 "positive regulation of
lipoprotein lipase activity" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048550
"negative regulation of pinocytosis" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045861 "negative regulation of
proteolysis" evidence=IEA] [GO:0045723 "positive regulation of
fatty acid biosynthetic process" evidence=IEA] [GO:0043277
"apoptotic cell clearance" evidence=IEA] [GO:0043031 "negative
regulation of macrophage activation" evidence=IEA] [GO:0042632
"cholesterol homeostasis" evidence=IEA] [GO:0034145 "positive
regulation of toll-like receptor 4 signaling pathway" evidence=IEA]
[GO:0032810 "sterol response element binding" evidence=IEA]
[GO:0032570 "response to progesterone stimulus" evidence=IEA]
[GO:0032369 "negative regulation of lipid transport" evidence=IEA]
[GO:0032270 "positive regulation of cellular protein metabolic
process" evidence=IEA] [GO:0010887 "negative regulation of
cholesterol storage" evidence=IEA] [GO:0010875 "positive regulation
of cholesterol efflux" evidence=IEA] [GO:0010870 "positive
regulation of receptor biosynthetic process" evidence=IEA]
[GO:0010867 "positive regulation of triglyceride biosynthetic
process" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0046872
GO:GO:0050728 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045861 GO:GO:0044255 GO:GO:0042632 GO:GO:0000122
GO:GO:0051006 GO:GO:0000790 GO:GO:2000189 GO:GO:0070328
GO:GO:0010867 GO:GO:0032570 GO:GO:0032270 GO:GO:0045723
GO:GO:0046965 GO:GO:0043031 GO:GO:0043277
GeneTree:ENSGT00680000099585 GO:GO:0010870 GO:GO:0032369
GO:GO:0034145 GO:GO:0032376 GO:GO:0048550 HOVERGEN:HBG108655
InterPro:IPR023257 PRINTS:PR02034 CTD:10062 KO:K08536 OMA:CILREEA
GO:GO:0032810 GO:GO:0090188 GO:GO:0090341 EMBL:CU469364
EMBL:DQ059138 EMBL:AB254406 RefSeq:NP_001095284.1 UniGene:Ssc.48215
SMR:Q4TU03 STRING:Q4TU03 Ensembl:ENSSSCT00000014461 GeneID:397553
KEGG:ssc:397553 Uniprot:Q4TU03
Length = 447
Score = 233 (87.1 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 50/194 (25%), Positives = 104/194 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 239 PMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 298
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 299 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFAL 358
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ +HP + ++ L LRTL+
Sbjct: 359 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLS 418
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 419 SVHSEQVFALRLQD 432
>UNIPROTKB|E2RS27 [details] [associations]
symbol:NR1H3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000189 "positive regulation of cholesterol
homeostasis" evidence=IEA] [GO:0090341 "negative regulation of
secretion of lysosomal enzymes" evidence=IEA] [GO:0090188 "negative
regulation of pancreatic juice secretion" evidence=IEA] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IEA] [GO:0070328
"triglyceride homeostasis" evidence=IEA] [GO:0051006 "positive
regulation of lipoprotein lipase activity" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0048550 "negative regulation of pinocytosis"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045861
"negative regulation of proteolysis" evidence=IEA] [GO:0045723
"positive regulation of fatty acid biosynthetic process"
evidence=IEA] [GO:0044255 "cellular lipid metabolic process"
evidence=IEA] [GO:0043277 "apoptotic cell clearance" evidence=IEA]
[GO:0043031 "negative regulation of macrophage activation"
evidence=IEA] [GO:0042632 "cholesterol homeostasis" evidence=IEA]
[GO:0034145 "positive regulation of toll-like receptor 4 signaling
pathway" evidence=IEA] [GO:0032810 "sterol response element
binding" evidence=IEA] [GO:0032570 "response to progesterone
stimulus" evidence=IEA] [GO:0032369 "negative regulation of lipid
transport" evidence=IEA] [GO:0032270 "positive regulation of
cellular protein metabolic process" evidence=IEA] [GO:0010887
"negative regulation of cholesterol storage" evidence=IEA]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=IEA] [GO:0010870 "positive regulation of receptor
biosynthetic process" evidence=IEA] [GO:0010867 "positive
regulation of triglyceride biosynthetic process" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0045893 GO:GO:0046872
GO:GO:0050728 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045861 GO:GO:0044255 GO:GO:0042632 GO:GO:0000122
GO:GO:0051006 GO:GO:0000790 GO:GO:2000189 GO:GO:0070328
GO:GO:0010867 GO:GO:0032570 GO:GO:0032270 GO:GO:0045723
GO:GO:0043031 GO:GO:0043277 GeneTree:ENSGT00680000099585
GO:GO:0010870 GO:GO:0032369 GO:GO:0034145 GO:GO:0032376
GO:GO:0048550 InterPro:IPR023257 PRINTS:PR02034 OMA:CILREEA
GO:GO:0032810 GO:GO:0090188 GO:GO:0090341 EMBL:AAEX03011491
ProteinModelPortal:E2RS27 Ensembl:ENSCAFT00000014022 Uniprot:E2RS27
Length = 450
Score = 233 (87.1 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 50/194 (25%), Positives = 104/194 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P+ + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV+
Sbjct: 242 PMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 301
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLSDTEIGL 224
L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L+D E L
Sbjct: 302 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFAL 361
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I + S R ++++ VER++ L ++ +HP + ++ L LRTL+
Sbjct: 362 LIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLS 421
Query: 285 QLHSEKLVAFQMTE 298
+HSE++ A ++ +
Sbjct: 422 SVHSEQVFALRLQD 435
>ZFIN|ZDB-GENE-990415-212 [details] [associations]
symbol:pparda "peroxisome proliferator-activated
receptor delta a" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006950 "response to stress" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003075 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01290 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-212 GO:GO:0005634
GO:GO:0006950 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GeneTree:ENSGT00700000104361
EMBL:FP067424 IPI:IPI00488450 Ensembl:ENSDART00000123458
Ensembl:ENSDART00000149743 Uniprot:F1QJT0
Length = 496
Score = 234 (87.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 79/293 (26%), Positives = 139/293 (47%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
H+A +R+GR+P+ EK +++A + + ++ + ++L + + V A+L T
Sbjct: 195 HDA-IRYGRMPEAEKRKLVAGLL--AGERGSQNSNESDL---KTLAKRVNNAYLKNLNMT 248
Query: 80 ADKIEPML--RRAREHPTYTACPSTLACPLNP---NS--HPLQGQQELLQDFSERFS--- 129
K +L + + P +L N N H +E+ R
Sbjct: 249 KKKARNILTGKTSASTPFVIHDMDSLVQAENGLVWNQVIHGAPPNKEIGVHVFYRCQCTT 308
Query: 130 -PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVL 188
T+R++ EF+K IPGF L +DQVTLLK GV E + L + + + ++ NG
Sbjct: 309 VETVRELTEFSKSIPGFIDLFLNDQVTLLKYGVHEAIFAMLPSLMNK--DGLLVANGRGF 366
Query: 189 V-RDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVE 245
V R+ + S F +M+ F+FA + N L L D+++ LF + +++ R GL N VE
Sbjct: 367 VTREFLRSLRKPFSEIMEPKFEFAVKFNALELDDSDLALFVAAIILCGDRPGLMNVHQVE 426
Query: 246 RMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+++ + L L NHP+ + L+ L DLR L +++ + + TE
Sbjct: 427 KIQDSILQALNQHLQLNHPDGRFIFPRLLQKLADLRQLVTENAQLVQKIKKTE 479
>UNIPROTKB|P51126 [details] [associations]
symbol:rara "Retinoic acid receptor alpha" species:8355
"Xenopus laevis" [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0021955 "central nervous system neuron
axonogenesis" evidence=IMP] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IMP] [GO:0050769 "positive regulation
of neurogenesis" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003078
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01292 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006351
GO:GO:0050769 GO:GO:0048384 GO:GO:0021955 HOVERGEN:HBG005606
GO:GO:0003708 EMBL:L11445 PIR:A41977 ProteinModelPortal:P51126
SMR:P51126 Xenbase:XB-GENE-865415 Uniprot:P51126
Length = 458
Score = 233 (87.1 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 64/230 (27%), Positives = 113/230 (49%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L FSE + I VEFAK++PGF+ L DQ+TLLK+ ++L++R+ + +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQD 282
Query: 179 SMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGL 238
+M +G L R +H++ L D +F FA + L + D E GL S+I +I R L
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQPVPLEMDDAETGLLSAICLICGDRQDL 342
Query: 239 RNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ V++++ L L + P++ ++ +++ + DLRT++ +E+++ +M E
Sbjct: 343 EQPDKVDKLQEPLLEALKIYVRTRRPQKPHMFPKMLMKITDLRTVSAKGAERVITLKM-E 401
Query: 299 XXXXXXXXXXXWHGEDNSKSPTGSSWSDVTMEEVK----SPLGSVSSTES 344
+ + G + SD + V SP S SST S
Sbjct: 402 IPGAMPLIQEMLENSEGLDTLGGGASSDAPVTPVAPGSCSPSLSPSSTHS 451
>ZFIN|ZDB-GENE-050410-7 [details] [associations]
symbol:nr1h3 "nuclear receptor subfamily 1, group H,
member 3" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;IDA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-050410-7 GO:GO:0005634 GO:GO:0046872 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GeneTree:ENSGT00680000099585
HOVERGEN:HBG108655 InterPro:IPR023257 PRINTS:PR02034
HOGENOM:HOG000220845 CTD:10062 KO:K08536 EMBL:CABZ01003670
EMBL:CABZ01003671 EMBL:CABZ01003672 EMBL:CABZ01009563
EMBL:CABZ01009564 EMBL:CABZ01009565 EMBL:CABZ01009566
EMBL:CABZ01009567 EMBL:CABZ01072909 EMBL:BC092160 IPI:IPI00498273
RefSeq:NP_001017545.1 UniGene:Dr.29884 SMR:Q56A56
Ensembl:ENSDART00000130731 GeneID:548341 KEGG:dre:548341
InParanoid:Q56A56 NextBio:20879392 Uniprot:Q56A56
Length = 412
Score = 229 (85.7 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 51/219 (23%), Positives = 113/219 (51%)
Query: 81 DKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAK 140
+K+ M ++ + ++ P P + + + +Q+ F+E +++++V+FAK
Sbjct: 180 EKLVAMQKQCNKR-SFIDRPKVTPWPQSQDPQNREVRQQRFAHFTELAIMSVQEIVDFAK 238
Query: 141 RIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF 200
++PGF L +DQ+ LLK E++L+ + ++ +S+ L ++ + +
Sbjct: 239 QLPGFLELTREDQIALLKTSTIEIMLLETSRRYNPAIDSITFLKDFTYNKEDFAKAGLQL 298
Query: 201 -LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVL 259
++ +F+F++ +N LHL + E L +I + S R +++ ELVER++ + L +
Sbjct: 299 EFINPIFEFSKGMNDLHLDEAEYALLIAINIFSADRPNVQDHELVERLQQPYVDALHSYI 358
Query: 260 NQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
P + ++ L LRTL+ +HSE++ A ++ +
Sbjct: 359 RIKRPNDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQD 397
>ZFIN|ZDB-GENE-040718-313 [details] [associations]
symbol:nr1h4 "nuclear receptor subfamily 1, group
H, member 4" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IDA] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IDA] [GO:0032052 "bile acid binding"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-040718-313 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0032052
GO:GO:0004887 HOVERGEN:HBG108655 CTD:9971 KO:K08537 EMBL:BC076220
IPI:IPI00485601 RefSeq:NP_001002574.1 UniGene:Dr.79916
ProteinModelPortal:Q6DGW7 SMR:Q6DGW7 GeneID:436847 KEGG:dre:436847
InParanoid:Q6DGW7 NextBio:20831279 Uniprot:Q6DGW7
Length = 483
Score = 231 (86.4 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 58/189 (30%), Positives = 103/189 (54%)
Query: 114 LQGQQELLQDF---SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA 170
LQ Q ++F +E + ++ +VEF K IPGF L H+DQ+ LLK E + +R A
Sbjct: 285 LQEQFNAEENFLLLTEMATSHVQVLVEFTKNIPGFQSLDHEDQIALLKGSAVEAMFLRSA 344
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIV 229
+F + + + EVL D I S + + MF+F + + L + E L ++I
Sbjct: 345 QVFSKKLPNG---HTEVL-EDRIRRSGISEEFITPMFNFYKSIGELQMMQEEHALLTAIT 400
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
++SP R +++++ VER++ + +L + HP++ A L+ L +LRTLN H+E
Sbjct: 401 ILSPDRPYVKDQQAVERLQEPMLEVLRKICKLQHPQEPQHFARLLGRLTELRTLNHHHAE 460
Query: 290 KLVAFQMTE 298
L +++M++
Sbjct: 461 MLESWRMSD 469
>UNIPROTKB|B4DRV7 [details] [associations]
symbol:VDR "cDNA FLJ51539, highly similar to Vitamin D3
receptor" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008434 "vitamin D3 receptor activity"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000324 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00350 PRINTS:PR00398
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0070561
EMBL:AC004466 HOVERGEN:HBG108655 GO:GO:0008434 UniGene:Hs.524368
HGNC:HGNC:12679 ChiTaRS:VDR EMBL:AC121338 EMBL:AK299446
IPI:IPI01012259 SMR:B4DRV7 STRING:B4DRV7 Ensembl:ENST00000535672
UCSC:uc010slq.2 Uniprot:B4DRV7
Length = 395
Score = 228 (85.3 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 59/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 191 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMD 250
Query: 177 TNSMICLNGEVLVR--DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C N + R D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 251 DMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPD 310
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ L+E ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 311 RPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 370
Query: 291 LVAFQ 295
++FQ
Sbjct: 371 CLSFQ 375
>UNIPROTKB|Q8JHU2 [details] [associations]
symbol:FXR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000980 "RNA polymerase
II distal enhancer sequence-specific DNA binding" evidence=IEA]
[GO:0001190 "RNA polymerase II transcription factor binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0008206 "bile acid metabolic process"
evidence=IEA] [GO:0032052 "bile acid binding" evidence=IEA]
[GO:0034255 "regulation of urea metabolic process" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=IEA] [GO:0071229
"cellular response to acid" evidence=IEA] [GO:0071417 "cellular
response to organic nitrogen" evidence=IEA] [GO:2001250 "positive
regulation of ammonia assimilation cycle" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0008206 GO:GO:0046872 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071417 GO:GO:0003705 GO:GO:0000980 GO:GO:0001190
GO:GO:0005719 GO:GO:0071229 GO:GO:0004887
GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655 CTD:9971
eggNOG:NOG302915 HOGENOM:HOG000220843 KO:K08537 OMA:FNKKLPA
GO:GO:2001250 GO:GO:0034255 EMBL:AADN02005984 EMBL:AF492497
IPI:IPI00603256 RefSeq:NP_989444.1 UniGene:Gga.127 HSSP:Q96RI1
SMR:Q8JHU2 STRING:Q8JHU2 Ensembl:ENSGALT00000018929 GeneID:373902
KEGG:gga:373902 InParanoid:Q8JHU2 NextBio:20813434 Uniprot:Q8JHU2
Length = 473
Score = 230 (86.0 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 52/175 (29%), Positives = 99/175 (56%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K++PGF L H+DQ+ LLK E + +R A +F + +
Sbjct: 289 TEMATSHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFSRKLPT----G 344
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
VL+ + I +S + + MF+F + + L ++ E L ++IV++SP R ++++E
Sbjct: 345 HTVLLEERIRNSGISDEFITPMFNFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDRES 404
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VER++ L ++L +HP+ A L+ L +LRT N H+E L+++++ +
Sbjct: 405 VERLQEPLLDILQKFCKLHHPDNPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 459
>UNIPROTKB|P11473 [details] [associations]
symbol:VDR "Vitamin D3 receptor" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0008434 "vitamin D3 receptor activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0045618
"positive regulation of keratinocyte differentiation" evidence=IMP]
[GO:0010839 "negative regulation of keratinocyte proliferation"
evidence=IMP] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0070644 "vitamin D response element
binding" evidence=IDA] [GO:0046965 "retinoid X receptor binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0060558 "regulation of calcidiol 1-monooxygenase
activity" evidence=ISS] [GO:0070561 "vitamin D receptor signaling
pathway" evidence=IDA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IDA] [GO:0046697 "decidualization"
evidence=IEP] [GO:0010980 "positive regulation of vitamin D
24-hydroxylase activity" evidence=IDA] Reactome:REACT_71
InterPro:IPR000324 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00350
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
Pathway_Interaction_DB:rxr_vdr_pathway EMBL:CH471111 GO:GO:0000122
GO:GO:0000902 Pathway_Interaction_DB:smad2_3nuclearpathway
Pathway_Interaction_DB:retinoic_acid_pathway GO:GO:0006367
GO:GO:0046697 MIM:607948 DrugBank:DB00146 DrugBank:DB00136
DrugBank:DB00153 DrugBank:DB00910 GO:GO:0045618 GO:GO:0010980
GO:GO:0010839 HOVERGEN:HBG108655 HOGENOM:HOG000220844 PDB:1YNW
PDBsum:1YNW KO:K08539 GO:GO:0008434 eggNOG:NOG283526
OrthoDB:EOG4J6RR1 CTD:7421 GO:GO:0060558 EMBL:J03258 EMBL:X67482
EMBL:AF026260 EMBL:AB002168 EMBL:AY342401 EMBL:AK312267
EMBL:BC060832 EMBL:M65208 EMBL:AY827087 IPI:IPI00005716 PIR:A28200
RefSeq:NP_000367.1 RefSeq:NP_001017535.1 RefSeq:NP_001017536.1
UniGene:Hs.524368 PDB:1DB1 PDB:1IE8 PDB:1IE9 PDB:1KB2 PDB:1KB4
PDB:1KB6 PDB:1S0Z PDB:1S19 PDB:1TXI PDB:2HAM PDB:2HAR PDB:2HAS
PDB:2HB7 PDB:2HB8 PDB:3A2I PDB:3A2J PDB:3A3Z PDB:3A40 PDB:3A78
PDB:3AUQ PDB:3AUR PDB:3AX8 PDB:3AZ1 PDB:3AZ2 PDB:3AZ3 PDB:3B0T
PDB:3CS4 PDB:3CS6 PDB:3M7R PDB:3OGT PDB:3P8X PDB:3TKC PDB:4G2I
PDBsum:1DB1 PDBsum:1IE8 PDBsum:1IE9 PDBsum:1KB2 PDBsum:1KB4
PDBsum:1KB6 PDBsum:1S0Z PDBsum:1S19 PDBsum:1TXI PDBsum:2HAM
PDBsum:2HAR PDBsum:2HAS PDBsum:2HB7 PDBsum:2HB8 PDBsum:3A2I
PDBsum:3A2J PDBsum:3A3Z PDBsum:3A40 PDBsum:3A78 PDBsum:3AUQ
PDBsum:3AUR PDBsum:3AX8 PDBsum:3AZ1 PDBsum:3AZ2 PDBsum:3AZ3
PDBsum:3B0T PDBsum:3CS4 PDBsum:3CS6 PDBsum:3M7R PDBsum:3OGT
PDBsum:3P8X PDBsum:3TKC PDBsum:4G2I DisProt:DP00184
ProteinModelPortal:P11473 SMR:P11473 DIP:DIP-32624N IntAct:P11473
MINT:MINT-236408 STRING:P11473 PhosphoSite:P11473 DMDM:137617
PRIDE:P11473 DNASU:7421 Ensembl:ENST00000229022
Ensembl:ENST00000395324 Ensembl:ENST00000549336 GeneID:7421
KEGG:hsa:7421 UCSC:uc001rql.3 GeneCards:GC12M048247 HGNC:HGNC:12679
MIM:277440 MIM:601769 neXtProt:NX_P11473 Orphanet:93160
PharmGKB:PA37301 InParanoid:P11473 PhylomeDB:P11473
BindingDB:P11473 ChEMBL:CHEMBL1977 ChiTaRS:VDR DrugBank:DB02300
DrugBank:DB01070 EvolutionaryTrace:P11473 GenomeRNAi:7421
NextBio:29054 ArrayExpress:P11473 Bgee:P11473 CleanEx:HS_VDR
Genevestigator:P11473 GermOnline:ENSG00000111424 Uniprot:P11473
Length = 427
Score = 228 (85.3 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 59/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 223 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMD 282
Query: 177 TNSMICLNGEVLVR--DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C N + R D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 283 DMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPD 342
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ L+E ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 343 RPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 402
Query: 291 LVAFQ 295
++FQ
Sbjct: 403 CLSFQ 407
>ZFIN|ZDB-GENE-060613-1 [details] [associations]
symbol:thrab "thyroid hormone receptor alpha b"
species:7955 "Danio rerio" [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0003708 "retinoic acid receptor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-060613-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 EMBL:BX510316 IPI:IPI00897050
Ensembl:ENSDART00000074549 Uniprot:F1QME0
Length = 391
Score = 226 (84.6 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 52/188 (27%), Positives = 100/188 (53%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
P+ P S + E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++
Sbjct: 181 PVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIM 240
Query: 166 LVRLACMFDSQTNSMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+R A +D ++ ++ L+GE+ V R+ + + + D++FD + L +L DTE+ L
Sbjct: 241 SLRAAVRYDPESETLT-LSGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVAL 299
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+++++S R+GL E +E+ + H +N + +L+ + DLR +
Sbjct: 300 LQAVLLMSSDRTGLTCVEKIEKCQEMYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIG 359
Query: 285 QLHSEKLV 292
H+ + +
Sbjct: 360 ACHASRFL 367
>UNIPROTKB|G3V1V9 [details] [associations]
symbol:VDR "Vitamin D3 receptor" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008434 "vitamin D3 receptor activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001501 "skeletal system
development" evidence=IEA] [GO:0006816 "calcium ion transport"
evidence=IEA] [GO:0006874 "cellular calcium ion homeostasis"
evidence=IEA] [GO:0007595 "lactation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0050892 "intestinal
absorption" evidence=IEA] [GO:0060058 "positive regulation of
apoptotic process involved in mammary gland involution"
evidence=IEA] [GO:0060558 "regulation of calcidiol 1-monooxygenase
activity" evidence=IEA] [GO:0060745 "mammary gland branching
involved in pregnancy" evidence=IEA] InterPro:IPR000324
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005829
GO:GO:0051592 GO:GO:0032355 GO:GO:0046872 GO:GO:0007568
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0005720 GO:GO:0030315
EMBL:CH471111 GO:GO:0009887 GO:GO:0001501 GO:GO:0006816
GO:GO:0006874 GO:GO:0050892 GO:GO:0007595 GO:GO:0060058
GO:GO:0005499 GO:GO:0060745 EMBL:AC004466 KO:K08539 GO:GO:0008434
OMA:NESFTMD CTD:7421 GO:GO:0060558 RefSeq:NP_001017536.1
UniGene:Hs.524368 GeneID:7421 KEGG:hsa:7421 HGNC:HGNC:12679
ChiTaRS:VDR GenomeRNAi:7421 NextBio:29054 EMBL:AC121338
ProteinModelPortal:G3V1V9 SMR:G3V1V9 Ensembl:ENST00000550325
ArrayExpress:G3V1V9 Bgee:G3V1V9 Uniprot:G3V1V9
Length = 477
Score = 228 (85.3 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 59/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 273 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMD 332
Query: 177 TNSMICLNGEVLVR--DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C N + R D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 333 DMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPD 392
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ L+E ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 393 RPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 452
Query: 291 LVAFQ 295
++FQ
Sbjct: 453 CLSFQ 457
>ZFIN|ZDB-GENE-080403-10 [details] [associations]
symbol:vdrb "vitamin D receptor b" species:7955
"Danio rerio" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008434 "vitamin D3 receptor
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000324 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-080403-10 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0070561
GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655
HOGENOM:HOG000220844 GO:GO:0008434 EMBL:EB970525 EMBL:DQ017633
IPI:IPI00500144 RefSeq:NP_001153457.1 UniGene:Dr.86291
ProteinModelPortal:Q1L673 SMR:Q1L673 Ensembl:ENSDART00000104116
Ensembl:ENSDART00000150885 GeneID:564511 KEGG:dre:564511 CTD:564511
eggNOG:NOG283526 InParanoid:Q1L673 OMA:NESFTMD OrthoDB:EOG4J6RR1
NextBio:20885416 Bgee:Q1L673 Uniprot:Q1L673
Length = 422
Score = 226 (84.6 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 60/193 (31%), Positives = 102/193 (52%)
Query: 108 NPNSHPLQGQQ-ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
+P+S G +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV++
Sbjct: 210 SPDSKEEDGSSLSMLPHLADLVSYSIQKVIGFAKMIPGFRELTAEDQIALLKSSAIEVIM 269
Query: 167 VRLACMFDSQTNSMICLNGEV--LVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGL 224
+R F + S C E V D + + L++ + F L L+L + E L
Sbjct: 270 LRSNQSFSLEDMSWSCGGPEFKYCVNDVTKAGHTLELLEPLVKFQVGLKKLNLHEEEHVL 329
Query: 225 FSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLN 284
+I ++SP R G+++ VE ++ K+ +L + +HP L A++I L DLR+LN
Sbjct: 330 LMAICLLSPDRPGVQDHVRVEALQDKVSEVLQAYIRAHHPGGRLLYAKMIQKLADLRSLN 389
Query: 285 QLHSEKL--VAFQ 295
+ HS++ ++FQ
Sbjct: 390 EEHSKQYRSLSFQ 402
>UNIPROTKB|E7EWA6 [details] [associations]
symbol:NR1H2 "Oxysterols receptor LXR-beta" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001723 InterPro:IPR008946 Pfam:PF00104 PRINTS:PR00398
SMART:SM00430 GO:GO:0005634 GO:GO:0003677 GO:GO:0003707
Gene3D:1.10.565.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
EMBL:AC008655 InterPro:IPR023257 PRINTS:PR02034 HGNC:HGNC:7965
ChiTaRS:NR1H2 IPI:IPI00967158 ProteinModelPortal:E7EWA6 SMR:E7EWA6
Ensembl:ENST00000411902 UCSC:uc002psa.4 ArrayExpress:E7EWA6
Bgee:E7EWA6 Uniprot:E7EWA6
Length = 363
Score = 223 (83.6 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 50/200 (25%), Positives = 97/200 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 149 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 208
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 209 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 268
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ L+ P+ ++ L
Sbjct: 269 DAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 328
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 329 SLRTLSSVHSEQVFALRLQD 348
>UNIPROTKB|Q5BIS6 [details] [associations]
symbol:NR1H2 "Oxysterols receptor LXR-beta" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 eggNOG:NOG285805
EMBL:BT021148 EMBL:BC109925 IPI:IPI00716629 UniGene:Bt.44371
ProteinModelPortal:Q5BIS6 SMR:Q5BIS6 STRING:Q5BIS6 PRIDE:Q5BIS6
HOVERGEN:HBG108655 InParanoid:Q5BIS6 OrthoDB:EOG4DV5M7
InterPro:IPR023257 PRINTS:PR02034 Uniprot:Q5BIS6
Length = 455
Score = 226 (84.6 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 50/200 (25%), Positives = 98/200 (49%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 241 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 300
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 301 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 360
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ + L+ P+ ++ L
Sbjct: 361 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVDALLSYTRIKRPQDQLRFPRMLMKLV 420
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 421 SLRTLSSVHSEQVFALRLQD 440
>UNIPROTKB|F1RH38 [details] [associations]
symbol:NR1H2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090340 "positive regulation of secretion of lysosomal
enzymes" evidence=IEA] [GO:0090187 "positive regulation of
pancreatic juice secretion" evidence=IEA] [GO:0090108 "positive
regulation of high-density lipoprotein particle assembly"
evidence=IEA] [GO:0051006 "positive regulation of lipoprotein
lipase activity" evidence=IEA] [GO:0048550 "negative regulation of
pinocytosis" evidence=IEA] [GO:0046965 "retinoid X receptor
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045861 "negative regulation of proteolysis" evidence=IEA]
[GO:0045723 "positive regulation of fatty acid biosynthetic
process" evidence=IEA] [GO:0044255 "cellular lipid metabolic
process" evidence=IEA] [GO:0042632 "cholesterol homeostasis"
evidence=IEA] [GO:0032369 "negative regulation of lipid transport"
evidence=IEA] [GO:0032270 "positive regulation of cellular protein
metabolic process" evidence=IEA] [GO:0010887 "negative regulation
of cholesterol storage" evidence=IEA] [GO:0010884 "positive
regulation of lipid storage" evidence=IEA] [GO:0010875 "positive
regulation of cholesterol efflux" evidence=IEA] [GO:0010867
"positive regulation of triglyceride biosynthetic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0005737 GO:GO:0045892
GO:GO:0046872 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0044255 GO:GO:0010887 GO:GO:0010875
GO:GO:0051006 GO:GO:0010867 GO:GO:0032270 GO:GO:0045723
GeneTree:ENSGT00680000099585 GO:GO:0032369 GO:GO:0048550
InterPro:IPR023257 PRINTS:PR02034 OMA:DEASSAC EMBL:FP102476
Ensembl:ENSSSCT00000003566 Uniprot:F1RH38
Length = 458
Score = 226 (84.6 bits), Expect = 9.6e-16, P = 9.6e-16
Identities = 50/200 (25%), Positives = 98/200 (49%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 244 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 303
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 304 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 363
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ + L+ P+ ++ L
Sbjct: 364 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVDALLSYTRIKRPQDQLRFPRMLMKLV 423
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 424 SLRTLSSVHSEQVFALRLQD 443
>UNIPROTKB|O42392 [details] [associations]
symbol:VDR "Vitamin D3 receptor" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008434 "vitamin D3 receptor activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000324
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0070561
HOVERGEN:HBG108655 KO:K08539 GO:GO:0008434 CTD:7421 EMBL:AF011356
IPI:IPI00572279 IPI:IPI00760368 PIR:A60912 RefSeq:NP_990429.1
UniGene:Gga.584 ProteinModelPortal:O42392 SMR:O42392 GeneID:395988
KEGG:gga:395988 BindingDB:O42392 ChEMBL:CHEMBL2353 NextBio:20816052
Uniprot:O42392
Length = 451
Score = 223 (83.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 57/182 (31%), Positives = 101/182 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F + S
Sbjct: 250 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEVIMLRSNQSFTMEDMS 309
Query: 180 MICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
C + + V D + ++ L++ + F L L+L + E L +I ++SP R G
Sbjct: 310 WTCGSNDFKYKVSDVTQAGHSMDLLEPLVKFQVGLKKLNLHEEEHVLLMAICILSPDRPG 369
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--KLVA 293
+++ LVE ++ +L ++L + HP + L A++I L DLR+LN+ HS+ + ++
Sbjct: 370 VQDTSLVESIQDRLSDILQTYIRCRHPPPGSRLLYAKMIQKLADLRSLNEEHSKQYRCLS 429
Query: 294 FQ 295
FQ
Sbjct: 430 FQ 431
Score = 45 (20.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 31 KREKARILAAMQQSTNTKCTEKALAAELDDEQ-RMLSTVVRAH---LDTCAFTADKIEPM 86
+R++ IL ++ + +++L +L +EQ +++ T++ AH DT +K P
Sbjct: 124 QRKREMILKRKEE----EALKESLKPKLSEEQQKVIDTLLEAHHKTFDTTYSDFNKFRPP 179
Query: 87 LR 88
+R
Sbjct: 180 VR 181
>UNIPROTKB|O18473 [details] [associations]
symbol:EcR "Ecdysone receptor" species:7102 "Heliothis
virescens" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR003069 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01283 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0005496 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0004884 EMBL:Y09009 PDB:1R1K PDB:1R20
PDB:2R40 PDBsum:1R1K PDBsum:1R20 PDBsum:2R40
ProteinModelPortal:O18473 SMR:O18473 IntAct:O18473
EvolutionaryTrace:O18473 Uniprot:O18473
Length = 576
Score = 235 (87.8 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 50/169 (29%), Positives = 97/169 (57%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEFAK +PGF+ + DQ+TLLKA EV+++R+A +D+ T+S++ N + R
Sbjct: 364 TVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTR 423
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERM-RG 249
D+ + ++++ + F + + + + L ++IV+ S R GL LVE + R
Sbjct: 424 DNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRY 482
Query: 250 KLENMLMHVLNQNH--PEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L + +++LNQN P + E++ +L ++RTL +S ++ ++
Sbjct: 483 YLNTLRVYILNQNSASPRGAVIFGEILGILTEIRTLGMQNSNMCISLKL 531
Score = 37 (18.1 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 3 EDELPILKSILKGNARYHNAPVRFGRVPKREKARILAAMQ 42
+D+LP+ + + H P+ P E ARIL +Q
Sbjct: 252 KDKLPVSTTTVDD----HMPPIMQCDPPPPEAARILECVQ 287
>MGI|MGI:1352463 [details] [associations]
symbol:Nr1h2 "nuclear receptor subfamily 1, group H, member
2" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0001133 "sequence-specific transcription regulatory region DNA
binding RNA polymerase II transcription factor recruiting
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IGI;IDA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0010629 "negative
regulation of gene expression" evidence=ISO] [GO:0010867 "positive
regulation of triglyceride biosynthetic process" evidence=ISO]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=ISO;IDA] [GO:0010884 "positive regulation of lipid
storage" evidence=IMP] [GO:0010887 "negative regulation of
cholesterol storage" evidence=ISO] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=IDA] [GO:0032270
"positive regulation of cellular protein metabolic process"
evidence=ISO] [GO:0032369 "negative regulation of lipid transport"
evidence=ISO] [GO:0032376 "positive regulation of cholesterol
transport" evidence=ISO] [GO:0042632 "cholesterol homeostasis"
evidence=IDA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=ISO] [GO:0044255 "cellular lipid metabolic process"
evidence=IDA] [GO:0045723 "positive regulation of fatty acid
biosynthetic process" evidence=ISO] [GO:0045861 "negative
regulation of proteolysis" evidence=IMP] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=ISO;IDA] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=ISO] [GO:0048550 "negative regulation of
pinocytosis" evidence=ISO] [GO:0051006 "positive regulation of
lipoprotein lipase activity" evidence=ISO] [GO:0055088 "lipid
homeostasis" evidence=IMP] [GO:0090108 "positive regulation of
high-density lipoprotein particle assembly" evidence=IDA]
[GO:0090187 "positive regulation of pancreatic juice secretion"
evidence=IMP] [GO:0090340 "positive regulation of secretion of
lysosomal enzymes" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:1352463 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0004879 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0045861 GO:GO:0044255 GO:GO:0042632
GO:GO:0010875 GO:GO:0000122 GO:GO:0046965 GO:GO:0010884
eggNOG:NOG285805 GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655
OrthoDB:EOG4DV5M7 InterPro:IPR023257 PRINTS:PR02034 CTD:7376
KO:K08535 OMA:DEASSAC ChiTaRS:NR1H2 EMBL:U09419 EMBL:AJ132602
EMBL:BC066025 IPI:IPI00119090 PIR:I49021 RefSeq:NP_033499.1
UniGene:Mm.968 ProteinModelPortal:Q60644 SMR:Q60644 DIP:DIP-444N
IntAct:Q60644 STRING:Q60644 PhosphoSite:Q60644 PRIDE:Q60644
Ensembl:ENSMUST00000073488 Ensembl:ENSMUST00000107912
Ensembl:ENSMUST00000167197 GeneID:22260 KEGG:mmu:22260
UCSC:uc009gpz.1 HOGENOM:HOG000220845 InParanoid:Q60644
NextBio:302353 Bgee:Q60644 CleanEx:MM_NR1H2 Genevestigator:Q60644
GermOnline:ENSMUSG00000060601 GO:GO:0090108 GO:GO:0090187
GO:GO:0090340 Uniprot:Q60644
Length = 446
Score = 225 (84.3 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/200 (25%), Positives = 97/200 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 232 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 291
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 292 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 351
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ L+ P+ ++ L
Sbjct: 352 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 411
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 412 SLRTLSSVHSEQVFALRLQD 431
>RGD|61906 [details] [associations]
symbol:Nr1h2 "nuclear receptor subfamily 1, group H, member 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0001133 "sequence-specific transcription regulatory region DNA
binding RNA polymerase II transcription factor recruiting
transcription factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA;ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0010867 "positive regulation of triglyceride
biosynthetic process" evidence=IEA;ISO] [GO:0010875 "positive
regulation of cholesterol efflux" evidence=IEA;ISO] [GO:0010884
"positive regulation of lipid storage" evidence=IEA;ISO] [GO:0010887
"negative regulation of cholesterol storage" evidence=IEA;ISO]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISO] [GO:0032270 "positive regulation of cellular protein
metabolic process" evidence=IEA;ISO] [GO:0032369 "negative
regulation of lipid transport" evidence=IEA;ISO] [GO:0032376
"positive regulation of cholesterol transport" evidence=ISO]
[GO:0042632 "cholesterol homeostasis" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0044255
"cellular lipid metabolic process" evidence=IEA;ISO] [GO:0045723
"positive regulation of fatty acid biosynthetic process"
evidence=IEA;ISO] [GO:0045861 "negative regulation of proteolysis"
evidence=IEA;ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0046965 "retinoid X receptor binding" evidence=ISO;IDA;IPI]
[GO:0048384 "retinoic acid receptor signaling pathway" evidence=IDA]
[GO:0048550 "negative regulation of pinocytosis" evidence=IEA;ISO]
[GO:0051006 "positive regulation of lipoprotein lipase activity"
evidence=IEA;ISO] [GO:0055088 "lipid homeostasis" evidence=ISO]
[GO:0090108 "positive regulation of high-density lipoprotein
particle assembly" evidence=IEA;ISO] [GO:0090187 "positive
regulation of pancreatic juice secretion" evidence=IEA;ISO]
[GO:0090340 "positive regulation of secretion of lysosomal enzymes"
evidence=IEA;ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
RGD:61906 GO:GO:0005634 GO:GO:0005737 GO:GO:0045892 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0044255 GO:GO:0010887 GO:GO:0010875 GO:GO:0051006
GO:GO:0010867 GO:GO:0010628 GO:GO:0010629 GO:GO:0032270
GO:GO:0048384 GO:GO:0045723 GO:GO:0046965 GO:GO:0001133
eggNOG:NOG285805 GeneTree:ENSGT00680000099585 GO:GO:0032369
GO:GO:0048550 HOVERGEN:HBG108655 OrthoDB:EOG4DV5M7
InterPro:IPR023257 PRINTS:PR02034 CTD:7376 KO:K08535 OMA:DEASSAC
HOGENOM:HOG000220845 EMBL:U20389 EMBL:U14533 IPI:IPI00208192
PIR:I59354 RefSeq:NP_113814.1 UniGene:Rn.786
ProteinModelPortal:Q62755 SMR:Q62755 STRING:Q62755
PhosphoSite:Q62755 Ensembl:ENSRNOT00000026862 GeneID:58851
KEGG:rno:58851 UCSC:RGD:61906 InParanoid:Q62755 NextBio:611431
ArrayExpress:Q62755 Genevestigator:Q62755
GermOnline:ENSRNOG00000019812 Uniprot:Q62755
Length = 446
Score = 225 (84.3 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/200 (25%), Positives = 97/200 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 232 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 291
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 292 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 351
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ L+ P+ ++ L
Sbjct: 352 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 411
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 412 SLRTLSSVHSEQVFALRLQD 431
>UNIPROTKB|F6XDJ5 [details] [associations]
symbol:NR1H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00680000099585 InterPro:IPR023257 PRINTS:PR02034
OMA:DEASSAC Ensembl:ENSCAFT00000005346 EMBL:AAEX03000791
Uniprot:F6XDJ5
Length = 457
Score = 225 (84.3 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/200 (25%), Positives = 97/200 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 243 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 302
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 303 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 362
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ L+ P+ ++ L
Sbjct: 363 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 422
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 423 SLRTLSSVHSEQVFALRLQD 442
>RGD|3959 [details] [associations]
symbol:Vdr "vitamin D (1,25- dihydroxyvitamin D3) receptor"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000228 "nuclear chromosome" evidence=TAS] [GO:0000902 "cell
morphogenesis" evidence=IEA;ISO] [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO;TAS] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=ISO] [GO:0005499 "vitamin D
binding" evidence=IMP;IDA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005720
"nuclear heterochromatin" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006816 "calcium
ion transport" evidence=IEA;ISO] [GO:0006874 "cellular calcium ion
homeostasis" evidence=IEA;ISO] [GO:0007275 "multicellular organismal
development" evidence=ISO] [GO:0007568 "aging" evidence=IEP]
[GO:0007595 "lactation" evidence=IEA;ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0008434 "vitamin D3 receptor
activity" evidence=IEA;ISO;IDA;TAS] [GO:0009887 "organ morphogenesis"
evidence=IEA;ISO] [GO:0010628 "positive regulation of gene
expression" evidence=ISO] [GO:0010839 "negative regulation of
keratinocyte proliferation" evidence=IEA;ISO] [GO:0010980 "positive
regulation of vitamin D 24-hydroxylase activity" evidence=IEA;ISO]
[GO:0030315 "T-tubule" evidence=IDA] [GO:0030522 "intracellular
receptor mediated signaling pathway" evidence=ISO] [GO:0032355
"response to estradiol stimulus" evidence=IEP] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0045618
"positive regulation of keratinocyte differentiation"
evidence=IEA;ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0046697 "decidualization" evidence=IEA;ISO] [GO:0046965 "retinoid
X receptor binding" evidence=IEA;ISO] [GO:0050892 "intestinal
absorption" evidence=IEA;ISO] [GO:0051592 "response to calcium ion"
evidence=IEP] [GO:0051924 "regulation of calcium ion transport"
evidence=IDA] [GO:0060058 "positive regulation of apoptotic process
involved in mammary gland involution" evidence=IEA;ISO] [GO:0060558
"regulation of calcidiol 1-monooxygenase activity" evidence=IEA;ISO]
[GO:0060745 "mammary gland branching involved in pregnancy"
evidence=IEA;ISO] [GO:0070561 "vitamin D receptor signaling pathway"
evidence=ISO;IDA] [GO:0070644 "vitamin D response element binding"
evidence=IEA;ISO] [GO:0097190 "apoptotic signaling pathway"
evidence=IDA] InterPro:IPR000324 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3959 GO:GO:0005829 GO:GO:0051592
GO:GO:0032355 GO:GO:0046872 GO:GO:0007568 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0005720 GO:GO:0045944 GO:GO:0097190 GO:GO:0051924 GO:GO:0030315
GO:GO:0000122 GO:GO:0009887 GO:GO:0001501 GO:GO:0006816 GO:GO:0006874
GO:GO:0050892 GO:GO:0000902 GO:GO:0007595 GO:GO:0060058 GO:GO:0046697
GO:GO:0005499 GO:GO:0045618 GO:GO:0010980 GO:GO:0010839 GO:GO:0060745
PDB:1RJK PDB:1RK3 PDB:1RKG PDB:1RKH PDB:2O4J PDB:2O4R PDB:2ZFX
PDB:3A2H PDB:3AUN PDB:3VJS PDB:3VJT PDB:3VRT PDB:3VRU PDB:3VRV
PDB:3VRW PDBsum:1RJK PDBsum:1RK3 PDBsum:1RKG PDBsum:1RKH PDBsum:2O4J
PDBsum:2O4R PDBsum:2ZFX PDBsum:3A2H PDBsum:3AUN PDBsum:3VJS
PDBsum:3VJT PDBsum:3VRT PDBsum:3VRU PDBsum:3VRV PDBsum:3VRW
HOVERGEN:HBG108655 HOGENOM:HOG000220844 GO:GO:0070644 KO:K08539
GO:GO:0008434 eggNOG:NOG283526 OrthoDB:EOG4J6RR1 CTD:7421
GO:GO:0060558 EMBL:J04147 IPI:IPI00197467 PIR:A31761
RefSeq:NP_058754.1 UniGene:Rn.10911 PDB:2ZL9 PDB:2ZLA PDB:2ZLC
PDB:2ZMH PDB:2ZMI PDB:2ZMJ PDB:2ZXM PDB:2ZXN PDB:3AFR PDBsum:2ZL9
PDBsum:2ZLA PDBsum:2ZLC PDBsum:2ZMH PDBsum:2ZMI PDBsum:2ZMJ
PDBsum:2ZXM PDBsum:2ZXN PDBsum:3AFR ProteinModelPortal:P13053
SMR:P13053 MINT:MINT-236433 STRING:P13053 PhosphoSite:P13053
GeneID:24873 KEGG:rno:24873 UCSC:RGD:3959 InParanoid:P13053
BindingDB:P13053 ChEMBL:CHEMBL3150 EvolutionaryTrace:P13053
NextBio:604698 Genevestigator:P13053 GermOnline:ENSRNOG00000008574
Uniprot:P13053
Length = 423
Score = 223 (83.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+L ++ S +I+ V+ FAK IPGF L DDQ+ LLK+ EV+++R F S
Sbjct: 222 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMS 281
Query: 180 MICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
C + + V D + + L++ + F L L+L + E L +I ++SP R G
Sbjct: 282 WDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPG 341
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPE--QMNLCAELISMLPDLRTLNQLHSEKL--VA 293
+++ +LVE ++ +L N L + HP L A++I L DLR+LN+ HS++ ++
Sbjct: 342 VQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLS 401
Query: 294 FQ 295
FQ
Sbjct: 402 FQ 403
>UNIPROTKB|P13053 [details] [associations]
symbol:Vdr "Vitamin D3 receptor" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000324 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00350
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3959 GO:GO:0005829 GO:GO:0051592 GO:GO:0032355
GO:GO:0046872 GO:GO:0007568 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0005720 GO:GO:0045944 GO:GO:0097190 GO:GO:0051924
GO:GO:0030315 GO:GO:0000122 GO:GO:0009887 GO:GO:0001501
GO:GO:0006816 GO:GO:0006874 GO:GO:0050892 GO:GO:0000902
GO:GO:0007595 GO:GO:0060058 GO:GO:0046697 GO:GO:0005499
GO:GO:0045618 GO:GO:0010980 GO:GO:0010839 GO:GO:0060745 PDB:1RJK
PDB:1RK3 PDB:1RKG PDB:1RKH PDB:2O4J PDB:2O4R PDB:2ZFX PDB:3A2H
PDB:3AUN PDB:3VJS PDB:3VJT PDB:3VRT PDB:3VRU PDB:3VRV PDB:3VRW
PDBsum:1RJK PDBsum:1RK3 PDBsum:1RKG PDBsum:1RKH PDBsum:2O4J
PDBsum:2O4R PDBsum:2ZFX PDBsum:3A2H PDBsum:3AUN PDBsum:3VJS
PDBsum:3VJT PDBsum:3VRT PDBsum:3VRU PDBsum:3VRV PDBsum:3VRW
HOVERGEN:HBG108655 HOGENOM:HOG000220844 GO:GO:0070644 KO:K08539
GO:GO:0008434 eggNOG:NOG283526 OrthoDB:EOG4J6RR1 CTD:7421
GO:GO:0060558 EMBL:J04147 IPI:IPI00197467 PIR:A31761
RefSeq:NP_058754.1 UniGene:Rn.10911 PDB:2ZL9 PDB:2ZLA PDB:2ZLC
PDB:2ZMH PDB:2ZMI PDB:2ZMJ PDB:2ZXM PDB:2ZXN PDB:3AFR PDBsum:2ZL9
PDBsum:2ZLA PDBsum:2ZLC PDBsum:2ZMH PDBsum:2ZMI PDBsum:2ZMJ
PDBsum:2ZXM PDBsum:2ZXN PDBsum:3AFR ProteinModelPortal:P13053
SMR:P13053 MINT:MINT-236433 STRING:P13053 PhosphoSite:P13053
GeneID:24873 KEGG:rno:24873 UCSC:RGD:3959 InParanoid:P13053
BindingDB:P13053 ChEMBL:CHEMBL3150 EvolutionaryTrace:P13053
NextBio:604698 Genevestigator:P13053 GermOnline:ENSRNOG00000008574
Uniprot:P13053
Length = 423
Score = 223 (83.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+L ++ S +I+ V+ FAK IPGF L DDQ+ LLK+ EV+++R F S
Sbjct: 222 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMS 281
Query: 180 MICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
C + + V D + + L++ + F L L+L + E L +I ++SP R G
Sbjct: 282 WDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPG 341
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPE--QMNLCAELISMLPDLRTLNQLHSEKL--VA 293
+++ +LVE ++ +L N L + HP L A++I L DLR+LN+ HS++ ++
Sbjct: 342 VQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLS 401
Query: 294 FQ 295
FQ
Sbjct: 402 FQ 403
>UNIPROTKB|J9NXL4 [details] [associations]
symbol:VDR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008434 "vitamin
D3 receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000324 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0070561
GeneTree:ENSGT00680000099585 GO:GO:0008434 EMBL:AAEX03015090
Ensembl:ENSCAFT00000043473 Uniprot:J9NXL4
Length = 427
Score = 223 (83.6 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 59/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 223 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNQSFIMD 282
Query: 177 TNSMICLNGEVLVR--DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C + + R D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 283 DMSWTCGSQDYKYRVSDVAKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICILSPD 342
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ LVE ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 343 RPGVQDAALVEALQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 402
Query: 291 LVAFQ 295
++FQ
Sbjct: 403 CLSFQ 407
>UNIPROTKB|G5E5J5 [details] [associations]
symbol:VDR "Vitamin D3 receptor" species:9913 "Bos taurus"
[GO:0070644 "vitamin D response element binding" evidence=IEA]
[GO:0060745 "mammary gland branching involved in pregnancy"
evidence=IEA] [GO:0060558 "regulation of calcidiol 1-monooxygenase
activity" evidence=IEA] [GO:0060058 "positive regulation of
apoptotic process involved in mammary gland involution"
evidence=IEA] [GO:0050892 "intestinal absorption" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=IEA] [GO:0046697
"decidualization" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045618 "positive regulation of keratinocyte differentiation"
evidence=IEA] [GO:0010980 "positive regulation of vitamin D
24-hydroxylase activity" evidence=IEA] [GO:0010839 "negative
regulation of keratinocyte proliferation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0007595 "lactation"
evidence=IEA] [GO:0006874 "cellular calcium ion homeostasis"
evidence=IEA] [GO:0006816 "calcium ion transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001501 "skeletal system
development" evidence=IEA] [GO:0000902 "cell morphogenesis"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008434 "vitamin
D3 receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000324 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0009887 GO:GO:0001501 GO:GO:0006816 GO:GO:0006874
GO:GO:0050892 GO:GO:0000902 GO:GO:0007595 GO:GO:0060058
GO:GO:0046697 GO:GO:0045618 GO:GO:0010980 GO:GO:0010839
GeneTree:ENSGT00680000099585 GO:GO:0060745 GO:GO:0070644
GO:GO:0008434 OMA:NESFTMD GO:GO:0060558 EMBL:DAAA02012986
Ensembl:ENSBTAT00000021832 Uniprot:G5E5J5
Length = 425
Score = 223 (83.6 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 59/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 221 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTPEDQIVLLKSSAIEVIMLRSNQSFTLD 280
Query: 177 TNSMICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C + + V D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 281 DMSWTCGSPDYKYQVSDVTRAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPD 340
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ LVE ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 341 RPGVQDAALVEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 400
Query: 291 LVAFQ 295
++FQ
Sbjct: 401 CLSFQ 405
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 31 KREKARILAAMQQSTNTKCTEKALAAELDDEQ-RMLSTVVRAHLDT 75
+R++ IL ++ + + +L +L +EQ R+++T++ AH T
Sbjct: 101 QRKREMILKRKEE----EALKDSLRPKLSEEQQRIITTLLEAHHKT 142
>UNIPROTKB|F1PKD9 [details] [associations]
symbol:VDR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008434 "vitamin
D3 receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000324 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0070561
GeneTree:ENSGT00680000099585 GO:GO:0008434 OMA:NESFTMD
EMBL:AAEX03015090 Ensembl:ENSCAFT00000014506 Uniprot:F1PKD9
Length = 438
Score = 223 (83.6 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 59/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 234 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNQSFIMD 293
Query: 177 TNSMICLNGEVLVR--DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C + + R D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 294 DMSWTCGSQDYKYRVSDVAKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICILSPD 353
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ LVE ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 354 RPGVQDAALVEALQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 413
Query: 291 LVAFQ 295
++FQ
Sbjct: 414 CLSFQ 418
>MGI|MGI:103076 [details] [associations]
symbol:Vdr "vitamin D receptor" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0000902 "cell
morphogenesis" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0005499 "vitamin D
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005720 "nuclear
heterochromatin" evidence=ISO] [GO:0005829 "cytosol" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0006816 "calcium ion transport" evidence=IMP]
[GO:0006874 "cellular calcium ion homeostasis" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IMP]
[GO:0007595 "lactation" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0008434 "vitamin D3 receptor
activity" evidence=ISO] [GO:0009887 "organ morphogenesis"
evidence=IMP] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] [GO:0010839 "negative regulation of keratinocyte
proliferation" evidence=ISO] [GO:0010980 "positive regulation of
vitamin D 24-hydroxylase activity" evidence=ISO] [GO:0030315
"T-tubule" evidence=ISO] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=ISO] [GO:0045618 "positive regulation of keratinocyte
differentiation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=ISO] [GO:0050892
"intestinal absorption" evidence=IMP] [GO:0051924 "regulation of
calcium ion transport" evidence=ISO] [GO:0060058 "positive
regulation of apoptotic process involved in mammary gland
involution" evidence=IMP] [GO:0060558 "regulation of calcidiol
1-monooxygenase activity" evidence=IMP] [GO:0060745 "mammary gland
branching involved in pregnancy" evidence=IMP] [GO:0070561 "vitamin
D receptor signaling pathway" evidence=ISO] [GO:0097190 "apoptotic
signaling pathway" evidence=ISO] InterPro:IPR000324
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:103076
GO:GO:0005829 GO:GO:0045892 GO:GO:0051592 GO:GO:0032355
GO:GO:0046872 GO:GO:0003677 GO:GO:0007568 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0005720 GO:GO:0045944
GO:GO:0030315 GO:GO:0000122 GO:GO:0009887 GO:GO:0001501
GO:GO:0006816 GO:GO:0006874 GO:GO:0050892 GO:GO:0000902
EMBL:CH466550 GO:GO:0007595 GO:GO:0060058 GO:GO:0046697
GO:GO:0005499 GO:GO:0045618 GO:GO:0010980 GO:GO:0010839
GeneTree:ENSGT00680000099585 GO:GO:0060745 HOVERGEN:HBG108655
HOGENOM:HOG000220844 GO:GO:0070644 KO:K08539 GO:GO:0008434
eggNOG:NOG283526 OMA:NESFTMD OrthoDB:EOG4J6RR1 CTD:7421
GO:GO:0060558 ChiTaRS:VDR EMBL:D31969 EMBL:AK030339 EMBL:AK154647
EMBL:BC006716 IPI:IPI00311693 PIR:PC4019 RefSeq:NP_033530.2
UniGene:Mm.245084 ProteinModelPortal:P48281 SMR:P48281
DIP:DIP-31478N IntAct:P48281 STRING:P48281 PhosphoSite:P48281
PRIDE:P48281 Ensembl:ENSMUST00000023119 GeneID:22337 KEGG:mmu:22337
InParanoid:Q922X0 BindingDB:P48281 ChEMBL:CHEMBL5601 NextBio:302589
Bgee:P48281 CleanEx:MM_VDR Genevestigator:P48281
GermOnline:ENSMUSG00000022479 Uniprot:P48281
Length = 422
Score = 222 (83.2 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 58/182 (31%), Positives = 98/182 (53%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+L ++ S +I+ V+ FAK IPGF L DDQ+ LLK+ EV+++R F S
Sbjct: 221 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTLDDMS 280
Query: 180 MICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
C + + + D + + L++ + F L L+L + E L +I ++SP R G
Sbjct: 281 WDCGSQDYKYDITDVSRAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPG 340
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPE--QMNLCAELISMLPDLRTLNQLHSEKL--VA 293
+++ +LVE ++ +L N L + HP L A++I L DLR+LN+ HS++ ++
Sbjct: 341 VQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLS 400
Query: 294 FQ 295
FQ
Sbjct: 401 FQ 402
>UNIPROTKB|P55055 [details] [associations]
symbol:NR1H2 "Oxysterols receptor LXR-beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001133
"sequence-specific transcription regulatory region DNA binding RNA
polymerase II transcription factor recruiting transcription factor
activity" evidence=IEA] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IEA] [GO:0010884 "positive regulation of
lipid storage" evidence=IEA] [GO:0042632 "cholesterol homeostasis"
evidence=IEA] [GO:0044255 "cellular lipid metabolic process"
evidence=IEA] [GO:0045861 "negative regulation of proteolysis"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=IEA] [GO:0090108 "positive regulation of
high-density lipoprotein particle assembly" evidence=IEA]
[GO:0090187 "positive regulation of pancreatic juice secretion"
evidence=IEA] [GO:0090340 "positive regulation of secretion of
lysosomal enzymes" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0003677 "DNA binding" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032270 "positive
regulation of cellular protein metabolic process" evidence=IMP]
[GO:0010875 "positive regulation of cholesterol efflux"
evidence=IMP] [GO:0045723 "positive regulation of fatty acid
biosynthetic process" evidence=IMP] [GO:0051006 "positive
regulation of lipoprotein lipase activity" evidence=IMP]
[GO:0010745 "negative regulation of macrophage derived foam cell
differentiation" evidence=IC] [GO:0032369 "negative regulation of
lipid transport" evidence=IMP] [GO:0048550 "negative regulation of
pinocytosis" evidence=IMP] [GO:0032376 "positive regulation of
cholesterol transport" evidence=IDA] [GO:0060336 "negative
regulation of interferon-gamma-mediated signaling pathway"
evidence=NAS] [GO:0010887 "negative regulation of cholesterol
storage" evidence=IMP] [GO:0010867 "positive regulation of
triglyceride biosynthetic process" evidence=IMP] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005737 GO:GO:0045892
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0044255
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0010887 GO:GO:0010745
GO:GO:0010875 GO:GO:0051006 GO:GO:0010867 GO:GO:0032270
GO:GO:0048384 GO:GO:0006367 GO:GO:0045723 GO:GO:0060336
eggNOG:NOG285805 GO:GO:0032369 EMBL:AC008655 PDB:1P8D PDB:4DK7
PDB:4DK8 PDBsum:1P8D PDBsum:4DK7 PDBsum:4DK8 PDB:3L0E PDBsum:3L0E
GO:GO:0048550 HOVERGEN:HBG108655 OrthoDB:EOG4DV5M7
InterPro:IPR023257 PRINTS:PR02034 EMBL:U07132 EMBL:AK290855
EMBL:BC007790 EMBL:BC033500 EMBL:BC047750 EMBL:BC074500 EMBL:U14534
IPI:IPI00022730 PIR:JC4014 RefSeq:NP_001243576.1 RefSeq:NP_009052.3
UniGene:Hs.432976 PDB:1PQ6 PDB:1PQ9 PDB:1PQC PDB:1UPV PDB:1UPW
PDB:3KFC PDBsum:1PQ6 PDBsum:1PQ9 PDBsum:1PQC PDBsum:1UPV
PDBsum:1UPW PDBsum:3KFC ProteinModelPortal:P55055 SMR:P55055
DIP:DIP-53004N IntAct:P55055 MINT:MINT-1444220 STRING:P55055
PhosphoSite:P55055 DMDM:296439251 PaxDb:P55055 PRIDE:P55055
DNASU:7376 Ensembl:ENST00000253727 GeneID:7376 KEGG:hsa:7376
CTD:7376 GeneCards:GC19P050879 HGNC:HGNC:7965 MIM:600380
neXtProt:NX_P55055 PharmGKB:PA31750 InParanoid:P55055 KO:K08535
OMA:DEASSAC PhylomeDB:P55055 BindingDB:P55055 ChEMBL:CHEMBL4093
ChiTaRS:NR1H2 EvolutionaryTrace:P55055 GenomeRNAi:7376
NextBio:28886 ArrayExpress:P55055 Bgee:P55055 CleanEx:HS_NR1H2
Genevestigator:P55055 GermOnline:ENSG00000131408 Uniprot:P55055
Length = 460
Score = 223 (83.6 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 50/200 (25%), Positives = 97/200 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 246 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 305
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 306 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 365
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ L+ P+ ++ L
Sbjct: 366 DAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 425
Query: 279 DLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 426 SLRTLSSVHSEQVFALRLQD 445
>UNIPROTKB|A3RGC1 [details] [associations]
symbol:VDR "Vitamin D3 receptor" species:9823 "Sus scrofa"
[GO:0005634 "nucleus" evidence=IEA] [GO:0070644 "vitamin D response
element binding" evidence=IEA] [GO:0060745 "mammary gland branching
involved in pregnancy" evidence=IEA] [GO:0060558 "regulation of
calcidiol 1-monooxygenase activity" evidence=IEA] [GO:0060058
"positive regulation of apoptotic process involved in mammary gland
involution" evidence=IEA] [GO:0050892 "intestinal absorption"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0046697 "decidualization" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045618 "positive
regulation of keratinocyte differentiation" evidence=IEA]
[GO:0010980 "positive regulation of vitamin D 24-hydroxylase
activity" evidence=IEA] [GO:0010839 "negative regulation of
keratinocyte proliferation" evidence=IEA] [GO:0009887 "organ
morphogenesis" evidence=IEA] [GO:0007595 "lactation" evidence=IEA]
[GO:0006874 "cellular calcium ion homeostasis" evidence=IEA]
[GO:0006816 "calcium ion transport" evidence=IEA] [GO:0001501
"skeletal system development" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008434 "vitamin D3 receptor activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000324
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0009887 GO:GO:0001501 GO:GO:0006816
GO:GO:0006874 GO:GO:0050892 GO:GO:0000902 GO:GO:0007595
GO:GO:0060058 GO:GO:0046697 GO:GO:0045618 GO:GO:0010980
GO:GO:0010839 GeneTree:ENSGT00680000099585 GO:GO:0060745
HOVERGEN:HBG108655 GO:GO:0070644 KO:K08539 GO:GO:0008434
OMA:NESFTMD CTD:7421 GO:GO:0060558 EMBL:EF405627
RefSeq:NP_001090883.1 UniGene:Ssc.51953 ProteinModelPortal:A3RGC1
SMR:A3RGC1 Ensembl:ENSSSCT00000032274 GeneID:396628 KEGG:ssc:396628
ChEMBL:CHEMBL5304 Uniprot:A3RGC1
Length = 427
Score = 222 (83.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 58/185 (31%), Positives = 100/185 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 223 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIVLLKSSAIEVIMLRSNQSFTMD 282
Query: 177 TNSMICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
S C + + V D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 283 DMSWTCGSRDYKYQVSDVAKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPD 342
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE--K 290
R G+++ L+E ++ +L N L + HP + L A++I L DLR+LN+ HS+ +
Sbjct: 343 RPGVQDPTLIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYR 402
Query: 291 LVAFQ 295
++FQ
Sbjct: 403 CLSFQ 407
>UNIPROTKB|P04625 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
PDB:3UVV PDBsum:3UVV CTD:7067 KO:K05547 EMBL:X04854 EMBL:Y00987
IPI:IPI00600673 PIR:A25236 RefSeq:NP_990644.1 UniGene:Gga.725
ProteinModelPortal:P04625 SMR:P04625 IntAct:P04625 STRING:P04625
GeneID:396251 KEGG:gga:396251 eggNOG:NOG239523 BindingDB:P04625
NextBio:20816303 Uniprot:P04625
Length = 408
Score = 220 (82.5 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 48/175 (27%), Positives = 96/175 (54%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D ++
Sbjct: 211 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 270
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++FD + L+ +L DTE+ L +++++S R+G
Sbjct: 271 TLT-LSGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTG 329
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L + +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 330 LICVDKIEKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFL 384
>UNIPROTKB|P18117 [details] [associations]
symbol:thrb-a "Thyroid hormone receptor beta-A"
species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IC;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA;IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0070324 "thyroid
hormone binding" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0070324 GO:GO:0004887 HOVERGEN:HBG005606
EMBL:M35360 EMBL:M35359 PIR:C36067 RefSeq:NP_001090182.1
RefSeq:NP_001090533.1 UniGene:Xl.474 UniGene:Xl.60293
ProteinModelPortal:P18117 SMR:P18117 GeneID:779054 GeneID:780755
KEGG:xla:779054 KEGG:xla:780755 CTD:7068 CTD:779054
Xenbase:XB-GENE-6070716 KO:K08362 Uniprot:P18117
Length = 373
Score = 218 (81.8 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 179 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 238
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ L DTE+ L +++++S R G
Sbjct: 239 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPG 297
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L + E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 298 LASVERIEKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFL 352
>MGI|MGI:1346307 [details] [associations]
symbol:Nr1i3 "nuclear receptor subfamily 1, group I, member
3" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004887 "thyroid
hormone receptor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 MGI:MGI:1346307
GO:GO:0005829 GO:GO:0005634 GO:GO:0045892 GO:GO:0005856
GO:GO:0046872 GO:GO:0003677 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
EMBL:CH466520 GO:GO:0004887 GeneTree:ENSGT00680000099585 PDB:1XLS
PDBsum:1XLS HOVERGEN:HBG108655 HOGENOM:HOG000220844 CTD:9970
eggNOG:NOG251788 KO:K08541 OMA:PRDRFLY OrthoDB:EOG4CVG7C
EMBL:AF009327 EMBL:AF009328 EMBL:AK133515 IPI:IPI00132688
IPI:IPI00678716 RefSeq:NP_001229991.1 RefSeq:NP_001229992.1
RefSeq:NP_033933.2 UniGene:Mm.486506 PDB:1XNX PDBsum:1XNX
ProteinModelPortal:O35627 SMR:O35627 STRING:O35627
PhosphoSite:O35627 PRIDE:O35627 Ensembl:ENSMUST00000005820
Ensembl:ENSMUST00000075469 GeneID:12355 KEGG:mmu:12355
InParanoid:Q3V008 BindingDB:O35627 ChEMBL:CHEMBL3069 ChiTaRS:NR1I3
EvolutionaryTrace:O35627 NextBio:281020 Bgee:O35627
CleanEx:MM_NR1I3 Genevestigator:O35627
GermOnline:ENSMUSG00000005677 Uniprot:O35627
Length = 358
Score = 217 (81.4 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 50/174 (28%), Positives = 96/174 (55%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL F++ + ++ +++F K +P F L +DQ++LLK E+L + L F QT +
Sbjct: 167 LLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTEN 226
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
C + D++H+ ++S+ F + L GLHL + E L ++ + SP R G+
Sbjct: 227 FFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVT 286
Query: 240 NKELVERMRGKLENMLM-HVLNQNHPEQMN-LCAELISMLPDLRTLNQLHSEKL 291
+E +++++ ++ +L H++ Q Q L A+L+ +L DLR++N +S +L
Sbjct: 287 QREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYEL 340
>RGD|3858 [details] [associations]
symbol:Thrb "thyroid hormone receptor beta" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=TAS] [GO:0004887 "thyroid
hormone receptor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=ISO;TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0007605 "sensory perception
of sound" evidence=ISO] [GO:0007621 "negative regulation of female
receptivity" evidence=ISO] [GO:0008016 "regulation of heart
contraction" evidence=ISO] [GO:0008050 "female courtship behavior"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation" evidence=IMP]
[GO:0009887 "organ morphogenesis" evidence=ISO] [GO:0019216
"regulation of lipid metabolic process" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=TAS] [GO:0031490 "chromatin DNA
binding" evidence=ISO] [GO:0032332 "positive regulation of
chondrocyte differentiation" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045778 "positive
regulation of ossification" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048568 "embryonic organ development"
evidence=IEP] [GO:0090181 "regulation of cholesterol metabolic
process" evidence=IMP] [GO:0090207 "regulation of triglyceride
metabolic process" evidence=IMP] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:3858 GO:GO:0005634
GO:GO:0042803 GO:GO:0046872 GO:GO:0008284 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0090181 GO:GO:0003690 GO:GO:0032332 GO:GO:0045778 GO:GO:0048568
GO:GO:0004887 GO:GO:0090207 HOVERGEN:HBG005606 eggNOG:NOG272726
HOGENOM:HOG000010313 EMBL:J03933 EMBL:J03819 EMBL:M25071
IPI:IPI00210609 IPI:IPI00324058 PIR:A31820 PIR:A41355
UniGene:Rn.88692 PDB:3M9E PDBsum:3M9E ProteinModelPortal:P18113
SMR:P18113 STRING:P18113 PhosphoSite:P18113 UCSC:RGD:3858
InParanoid:P37826 BindingDB:P18113 ChEMBL:CHEMBL3917
EvolutionaryTrace:P18113 ArrayExpress:P18113 Genevestigator:P18113
GermOnline:ENSRNOG00000006649 Uniprot:P18113
Length = 461
Score = 220 (82.5 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 64/238 (26%), Positives = 117/238 (49%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLA-CPLNPNSHPLQGQ 117
D+E ++ TV AH+ T A + ++ R+ P + P+ N+ P GQ
Sbjct: 216 DEEWELIKTVTEAHVATNAQGSH-----WKQKRKF-----LPEDIGQAPI-VNA-PEGGQ 263
Query: 118 QEL--LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
+L F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D
Sbjct: 264 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 323
Query: 176 QTNSMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
+ ++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S
Sbjct: 324 DSETLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 382
Query: 235 RSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
R GL E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 383 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 440
>UNIPROTKB|P18119 [details] [associations]
symbol:thrb-b "Thyroid hormone receptor beta-B"
species:8355 "Xenopus laevis" [GO:0004887 "thyroid hormone receptor
activity" evidence=TAS] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
EMBL:M35362 EMBL:M35361 PIR:D36067 RefSeq:NP_001081250.1
UniGene:Xl.57134 ProteinModelPortal:P18119 SMR:P18119 PRIDE:P18119
GeneID:397734 KEGG:xla:397734 CTD:397734 Xenbase:XB-GENE-6252616
Uniprot:P18119
Length = 414
Score = 218 (81.8 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 220 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 279
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ L DTE+ L +++++S R G
Sbjct: 280 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFSLDDTEVALLQAVLLMSSDRPG 338
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L + E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 339 LSSVERIEKCQEGFLLAFEHYINYRKHNIAHFWPKLLMKVTDLRMIGACHASRFL 393
>UNIPROTKB|P15204 [details] [associations]
symbol:thra-a "Thyroid hormone receptor alpha-A"
species:8355 "Xenopus laevis" [GO:0004887 "thyroid hormone receptor
activity" evidence=IDA;TAS] [GO:0042803 "protein homodimerization
activity" evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA;IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0046965 "retinoid X
receptor binding" evidence=IPI] [GO:0046966 "thyroid hormone
receptor binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0070324 "thyroid
hormone binding" evidence=IDA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0042803 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0070324 GO:GO:0004887 HOVERGEN:HBG005606
EMBL:M35343 EMBL:X17385 EMBL:BC170071 EMBL:BC170077 PIR:S09605
RefSeq:NP_001081595.1 UniGene:Xl.309 ProteinModelPortal:P15204
GeneID:397942 KEGG:xla:397942 CTD:7067 Xenbase:XB-GENE-5966552
KO:K05547 Uniprot:P15204
Length = 418
Score = 218 (81.8 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 48/175 (27%), Positives = 93/175 (53%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +
Sbjct: 221 EAFSEFTKIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSE 280
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++FD L +L DTE+ L +++++S R+G
Sbjct: 281 TLT-LSGEMAVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTG 339
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L + +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 340 LICTDKIEKCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFL 394
>UNIPROTKB|P18115 [details] [associations]
symbol:thra-b "Thyroid hormone receptor alpha-B"
species:8355 "Xenopus laevis" [GO:0004887 "thyroid hormone receptor
activity" evidence=TAS] [GO:0042803 "protein homodimerization
activity" evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0046965 "retinoid X receptor
binding" evidence=IPI] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] [GO:0070324 "thyroid hormone binding"
evidence=IDA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0045893
GO:GO:0042803 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0070324 GO:GO:0004887 HOVERGEN:HBG005606 EMBL:M35344
EMBL:L76285 PIR:B36067 ProteinModelPortal:P18115 SMR:P18115
Uniprot:P18115
Length = 418
Score = 218 (81.8 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 48/175 (27%), Positives = 93/175 (53%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +
Sbjct: 221 EAFSEFTKIITPAITRVVDFAKKLPMFSELTCEDQIILLKGCCMEIMSLRAAVRYDPDSE 280
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++FD L +L DTE+ L +++++S R+G
Sbjct: 281 TLT-LSGEMAVKREQLKNGGLGVVSDAIFDLGRSLAAFNLDDTEVALLQAVLLMSSDRTG 339
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L + +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 340 LICTDKIEKCQETYLLAFEHYINHRKHNIPHFWPKLLMKVTDLRMIGACHASRFL 394
>UNIPROTKB|G3X7C1 [details] [associations]
symbol:THRB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031490 "chromatin DNA
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0009887 "organ morphogenesis" evidence=IEA] [GO:0008050 "female
courtship behavior" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0007621 "negative regulation of
female receptivity" evidence=IEA] [GO:0007605 "sensory perception
of sound" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
GO:GO:0000122 GO:GO:0009887 GO:GO:0007605 GO:GO:0031490
GO:GO:0004887 GO:GO:0007621 GO:GO:0008050
GeneTree:ENSGT00680000099662 OMA:HLIQATW EMBL:DAAA02061150
EMBL:DAAA02061151 EMBL:DAAA02061152 Ensembl:ENSBTAT00000023670
Uniprot:G3X7C1
Length = 459
Score = 219 (82.2 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 265 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 324
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 325 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 383
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 384 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 438
>UNIPROTKB|F1PPW9 [details] [associations]
symbol:THRB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 CTD:7068 KO:K08362 OMA:HLIQATW
EMBL:AAEX03013558 RefSeq:XP_862690.2 Ensembl:ENSCAFT00000038637
GeneID:403599 KEGG:cfa:403599 Uniprot:F1PPW9
Length = 461
Score = 219 (82.2 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 267 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 326
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 327 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 386 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 440
>UNIPROTKB|P10828 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007621 "negative regulation of female
receptivity" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0008050 "female courtship behavior"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0031490 "chromatin DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0003714
GO:GO:0005654 EMBL:CH471055 GO:GO:0046872 GO:GO:0003677
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0000122 GO:GO:0009887
GO:GO:0007605 DrugBank:DB00451 DrugBank:DB00279 GO:GO:0006367
GO:GO:0031490 GO:GO:0004887 HOVERGEN:HBG005606 GO:GO:0007621
GO:GO:0008050 PDB:2NLL PDBsum:2NLL Orphanet:97927 eggNOG:NOG272726
HOGENOM:HOG000010313 CTD:7068 KO:K08362 OrthoDB:EOG4Z8XWB
EMBL:M26747 EMBL:X04707 EMBL:AK096628 EMBL:AC012087 EMBL:AC093927
EMBL:AC098971 EMBL:AC099054 EMBL:AC112217 EMBL:BC106929
EMBL:BC106930 EMBL:AY286465 EMBL:AY286466 EMBL:AY286467
EMBL:AY286468 EMBL:AY286469 EMBL:AY286470 EMBL:AY286471 EMBL:X74497
IPI:IPI00444844 IPI:IPI00446999 PIR:A25237 PIR:S40152
RefSeq:NP_000452.2 RefSeq:NP_001121648.1 RefSeq:NP_001121649.1
RefSeq:NP_001239563.1 UniGene:Hs.187861 UniGene:Hs.713754 PDB:1BSX
PDB:1N46 PDB:1NAX PDB:1NQ0 PDB:1NQ1 PDB:1NQ2 PDB:1NUO PDB:1Q4X
PDB:1R6G PDB:1XZX PDB:1Y0X PDB:2J4A PDB:2PIN PDB:3D57 PDB:3GWS
PDB:3IMY PDB:3JZC PDBsum:1BSX PDBsum:1N46 PDBsum:1NAX PDBsum:1NQ0
PDBsum:1NQ1 PDBsum:1NQ2 PDBsum:1NUO PDBsum:1Q4X PDBsum:1R6G
PDBsum:1XZX PDBsum:1Y0X PDBsum:2J4A PDBsum:2PIN PDBsum:3D57
PDBsum:3GWS PDBsum:3IMY PDBsum:3JZC ProteinModelPortal:P10828
SMR:P10828 DIP:DIP-5991N IntAct:P10828 MINT:MINT-1508903
STRING:P10828 PhosphoSite:P10828 DMDM:586092 PRIDE:P10828
DNASU:7068 Ensembl:ENST00000280696 Ensembl:ENST00000356447
Ensembl:ENST00000396671 Ensembl:ENST00000415021
Ensembl:ENST00000416420 Ensembl:ENST00000447875 GeneID:7068
KEGG:hsa:7068 UCSC:uc003ccx.4 GeneCards:GC03M024158 HGNC:HGNC:11799
HPA:CAB002008 HPA:CAB002009 MIM:145650 MIM:188570 MIM:190160
MIM:274300 neXtProt:NX_P10828 Orphanet:3221 Orphanet:165994
PharmGKB:PA36508 OMA:HLIQATW BindingDB:P10828 ChEMBL:CHEMBL1947
EvolutionaryTrace:P10828 GenomeRNAi:7068 NextBio:27637
ArrayExpress:P10828 Bgee:P10828 CleanEx:HS_THRB
Genevestigator:P10828 GermOnline:ENSG00000151090 Uniprot:P10828
Length = 461
Score = 219 (82.2 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 267 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 326
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 327 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 386 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 440
>UNIPROTKB|F1RS47 [details] [associations]
symbol:THRB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031490 "chromatin DNA
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0009887 "organ morphogenesis" evidence=IEA] [GO:0008050 "female
courtship behavior" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0007621 "negative regulation of
female receptivity" evidence=IEA] [GO:0007605 "sensory perception
of sound" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
GO:GO:0000122 GO:GO:0009887 GO:GO:0007605 GO:GO:0031490
GO:GO:0004887 GO:GO:0007621 GO:GO:0008050
GeneTree:ENSGT00680000099662 OMA:HLIQATW EMBL:CU463272
EMBL:CU633256 Ensembl:ENSSSCT00000012277 Uniprot:F1RS47
Length = 461
Score = 219 (82.2 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 267 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 326
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 327 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 386 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 440
>FB|FBgn0000546 [details] [associations]
symbol:EcR "Ecdysone receptor" species:7227 "Drosophila
melanogaster" [GO:0004884 "ecdysteroid hormone receptor activity"
evidence=NAS;IDA;IPI] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IDA;IPI]
[GO:0007286 "spermatid development" evidence=IMP] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0008232
"activator ecdysone receptor complex" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IDA;IPI] [GO:0008230
"ecdysone receptor holocomplex" evidence=TAS;IPI] [GO:0007291
"sperm individualization" evidence=IMP] [GO:0008231 "repressor
ecdysone receptor complex" evidence=IPI] [GO:0070491 "repressing
transcription factor binding" evidence=IPI] [GO:0048477 "oogenesis"
evidence=NAS;IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0007155 "cell adhesion"
evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IGI;IMP] [GO:0035188 "hatching"
evidence=IMP] [GO:0035076 "ecdysone receptor-mediated signaling
pathway" evidence=IMP] [GO:0035073 "pupariation" evidence=IMP]
[GO:0007552 "metamorphosis" evidence=IMP] [GO:0018990 "ecdysis,
chitin-based cuticle" evidence=IMP] [GO:0035193 "larval central
nervous system remodeling" evidence=IMP;TAS] [GO:0003677 "DNA
binding" evidence=IDA;NAS] [GO:0005496 "steroid binding"
evidence=IEA;NAS] [GO:0005700 "polytene chromosome" evidence=NAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007298
"border follicle cell migration" evidence=IMP] [GO:0016322 "neuron
remodeling" evidence=IMP] [GO:0035072 "ecdysone-mediated induction
of salivary gland cell autophagic cell death" evidence=NAS]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=NAS;TAS]
[GO:0007561 "imaginal disc eversion" evidence=TAS] [GO:0040034
"regulation of development, heterochronic" evidence=TAS]
[GO:0016319 "mushroom body development" evidence=IGI] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0008258 "head
involution" evidence=IMP] [GO:0008362 "chitin-based embryonic
cuticle biosynthetic process" evidence=IMP] [GO:0007390 "germ-band
shortening" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0048813 "dendrite morphogenesis"
evidence=IMP;NAS] [GO:0006914 "autophagy" evidence=IMP] [GO:0035180
"larval wandering behavior" evidence=IMP] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0010002 "cardioblast
differentiation" evidence=IMP] [GO:0035053 "dorsal vessel heart
proper cell fate commitment" evidence=IMP] [GO:0048738 "cardiac
muscle tissue development" evidence=IMP] [GO:0007422 "peripheral
nervous system development" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0030425 "dendrite" evidence=IMP] [GO:0042220
"response to cocaine" evidence=IGI] [GO:0007488 "histoblast
morphogenesis" evidence=IMP] [GO:0008544 "epidermis development"
evidence=IMP] [GO:0044130 "negative regulation of growth of
symbiont in host" evidence=IMP] [GO:0043065 "positive regulation of
apoptotic process" evidence=IMP] [GO:0007468 "regulation of
rhodopsin gene expression" evidence=IMP] [GO:0007616 "long-term
memory" evidence=IMP] [GO:0035297 "regulation of Malpighian tubule
diameter" evidence=IMP] [GO:0007443 "Malpighian tubule
morphogenesis" evidence=IMP] [GO:0045938 "positive regulation of
circadian sleep/wake cycle, sleep" evidence=IMP] [GO:0035206
"regulation of hemocyte proliferation" evidence=IMP] [GO:0007281
"germ cell development" evidence=IMP] [GO:0035075 "response to
ecdysone" evidence=IMP] [GO:0001225 "RNA polymerase II
transcription coactivator binding" evidence=IPI] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003069
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01283 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 EMBL:AE013599
GO:GO:0008340 GO:GO:0035188 GO:GO:0005737 GO:GO:0045892
GO:GO:0005496 GO:GO:0046872 GO:GO:0003677 GO:GO:0008362
GO:GO:0042220 GO:GO:0030425 GO:GO:0043565 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006914
GO:GO:0016322 GO:GO:0007155 GO:GO:0007616 GO:GO:0007422
GO:GO:0048738 GO:GO:0010002 GO:GO:0035053 GO:GO:0001077
GO:GO:0043065 GO:GO:0007298 GO:GO:0048813 GO:GO:0045938
GO:GO:0007517 GO:GO:0007291 GO:GO:0044130 GO:GO:0016319
GO:GO:0007409 GO:GO:0046982 GO:GO:0035073 GO:GO:0040034
GO:GO:0005700 GO:GO:0035206 GO:GO:0008544 GO:GO:0007476
GO:GO:0035072 GO:GO:0008258 GO:GO:0018990 GO:GO:0007488
GO:GO:0008231 EMBL:M74078 EMBL:S63761 EMBL:AY075461 EMBL:AY058575
EMBL:BT012469 EMBL:BT015234 PIR:A40709 PIR:A41055
RefSeq:NP_001163061.1 RefSeq:NP_724456.1 RefSeq:NP_724457.1
RefSeq:NP_724458.1 RefSeq:NP_724459.1 RefSeq:NP_724460.1
UniGene:Dm.4159 PDB:1R0N PDB:1R0O PDB:2HAN PDBsum:1R0N PDBsum:1R0O
PDBsum:2HAN ProteinModelPortal:P34021 SMR:P34021 DIP:DIP-158N
IntAct:P34021 MINT:MINT-294442 STRING:P34021 PaxDb:P34021
PRIDE:P34021 EnsemblMetazoa:FBtr0086011 EnsemblMetazoa:FBtr0302439
GeneID:35540 KEGG:dme:Dmel_CG1765 CTD:35540 FlyBase:FBgn0000546
eggNOG:NOG285805 GeneTree:ENSGT00680000099585 HOGENOM:HOG000244965
InParanoid:P34021 KO:K14034 OMA:EGCDAKK OrthoDB:EOG431ZD7
PhylomeDB:P34021 ChEMBL:CHEMBL5676 EvolutionaryTrace:P34021
GenomeRNAi:35540 NextBio:793933 Bgee:P34021 GermOnline:CG1765
GO:GO:0004884 GO:GO:0007390 GO:GO:0007561 GO:GO:0035193
GO:GO:0035180 GO:GO:0035297 GO:GO:0007468 Uniprot:P34021
Length = 878
Score = 224 (83.9 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 50/169 (29%), Positives = 100/169 (59%)
Query: 131 TIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVR 190
T++ +VEFAK +P F+ + +DQ+TLLKA EV+++R+A +D ++S+ N R
Sbjct: 470 TVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTR 529
Query: 191 DSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
DS + ++ + F ++ + + + E L ++IV+ S R GL +LVE ++
Sbjct: 530 DSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFS-DRPGLEKAQLVEAIQSY 588
Query: 251 -LENMLMHVLNQNHPEQMNLC--AELISMLPDLRTLNQLHSEKLVAFQM 296
++ + +++LN++ + M+L A+L+S+L +LRTL ++E + ++
Sbjct: 589 YIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKL 637
>ZFIN|ZDB-GENE-990415-263 [details] [associations]
symbol:thraa "thyroid hormone receptor alpha a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IEA;IDA]
[GO:0009725 "response to hormone stimulus" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000988 "protein
binding transcription factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
ZFIN:ZDB-GENE-990415-263 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0009725 GO:GO:0004887 GO:GO:0000988
EMBL:AL590145 GeneTree:ENSGT00680000099662 IPI:IPI00931420
ProteinModelPortal:F1Q735 Ensembl:ENSDART00000112817
ArrayExpress:F1Q735 Bgee:F1Q735 Uniprot:F1Q735
Length = 466
Score = 219 (82.2 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 48/175 (27%), Positives = 96/175 (54%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D ++
Sbjct: 210 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 269
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++FD + L+ +L D+E+ L +++++S RSG
Sbjct: 270 TLT-LSGEMAVSREQLKNGGLGVVSDAIFDLGKSLSQFNLDDSEVALLQAVLLMSSDRSG 328
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + +LR + H+ + +
Sbjct: 329 LTCVEKIEKCQEMYLLAFEHYINHRKHNISHFWPKLLMKVTNLRMIGACHASRFL 383
>UNIPROTKB|E2R2K1 [details] [associations]
symbol:NR1H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 InterPro:IPR023257
PRINTS:PR02034 Ensembl:ENSCAFT00000005346 Uniprot:E2R2K1
Length = 457
Score = 218 (81.8 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 49/193 (25%), Positives = 93/193 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 232 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 291
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 292 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 351
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ L+ P+ ++ L
Sbjct: 352 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLV 411
Query: 279 DLRTLNQLHSEKL 291
LRTL+ +HSE++
Sbjct: 412 SLRTLSSVHSEQV 424
>UNIPROTKB|P68306 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
GeneTree:ENSGT00680000099662 eggNOG:NOG272726 HOGENOM:HOG000010313
CTD:7068 KO:K08362 EMBL:X17504 EMBL:M65207 EMBL:Z50188
IPI:IPI00657637 PIR:S09625 RefSeq:NP_990778.1 UniGene:Gga.609
ProteinModelPortal:P68306 SMR:P68306 IntAct:P68306 STRING:P68306
Ensembl:ENSGALT00000031162 GeneID:396431 KEGG:gga:396431
OrthoDB:EOG4Z8XWB NextBio:20816472 ArrayExpress:P68306
Uniprot:P68306
Length = 369
Score = 215 (80.7 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 175 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 234
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 235 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 293
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 294 LVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFL 348
>RGD|628831 [details] [associations]
symbol:Nr1h4 "nuclear receptor subfamily 1, group H, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific
DNA binding" evidence=IEA;ISO] [GO:0001190 "RNA polymerase II
transcription factor binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IDA] [GO:0004872 "receptor activity" evidence=IDA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=ISO]
[GO:0004887 "thyroid hormone receptor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IEA;ISO] [GO:0006109 "regulation of
carbohydrate metabolic process" evidence=IMP] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008206 "bile acid metabolic process"
evidence=ISO;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009749 "response to glucose stimulus" evidence=IEP]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISO] [GO:0032052 "bile acid binding" evidence=ISO;IDA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEP]
[GO:0034255 "regulation of urea metabolic process"
evidence=IEA;ISO] [GO:0042277 "peptide binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IMP] [GO:0046965 "retinoid X
receptor binding" evidence=IEA;ISO] [GO:0048565 "digestive tract
development" evidence=IEP] [GO:0071229 "cellular response to acid"
evidence=IEA;ISO] [GO:0071417 "cellular response to organic
nitrogen" evidence=IEA;ISO] [GO:2000213 "positive regulation of
glutamate metabolic process" evidence=ISO] [GO:2001250 "positive
regulation of ammonia assimilation cycle" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=IDA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:628831 GO:GO:0005634 GO:GO:0006109 GO:GO:0008206
GO:GO:0046872 GO:GO:0003677 GO:GO:0009749 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0032496 GO:GO:0045944 GO:GO:0000122
GO:GO:0042277 GO:GO:0032052 GO:GO:0048565 GO:GO:0004887
GeneTree:ENSGT00680000099585 PDB:1OSV PDBsum:1OSV
HOVERGEN:HBG108655 CTD:9971 eggNOG:NOG302915 HOGENOM:HOG000220843
KO:K08537 OrthoDB:EOG4640C0 EMBL:U18374 IPI:IPI00339086 PIR:A56918
RefSeq:NP_068513.1 UniGene:Rn.42943 PDB:1OT7 PDBsum:1OT7
ProteinModelPortal:Q62735 SMR:Q62735 STRING:Q62735
PhosphoSite:Q62735 PRIDE:Q62735 Ensembl:ENSRNOT00000009910
GeneID:60351 KEGG:rno:60351 UCSC:RGD:628831
EvolutionaryTrace:Q62735 NextBio:612015 ArrayExpress:Q62735
Genevestigator:Q62735 GermOnline:ENSRNOG00000007197 Uniprot:Q62735
Length = 469
Score = 218 (81.8 bits), Expect = 8.1e-15, P = 8.1e-15
Identities = 52/175 (29%), Positives = 95/175 (54%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF KR+PGF L H+DQ+ LLK E + +R A +F N +
Sbjct: 285 TEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF----NKKLPAG 340
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 341 HADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREA 400
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 401 VEKLQEPLLDVLQKLCKIYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 455
>ZFIN|ZDB-GENE-990415-268 [details] [associations]
symbol:thrb "thyroid hormone receptor beta"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA;IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0000988 "protein binding
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-990415-268 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GO:GO:0000988 EMBL:BX927163 GeneTree:ENSGT00680000099662
EMBL:CR382334 EMBL:CU207349 ProteinModelPortal:G1K2F9
Ensembl:ENSDART00000019247 Bgee:G1K2F9 Uniprot:G1K2F9
Length = 470
Score = 218 (81.8 bits), Expect = 8.1e-15, P = 8.1e-15
Identities = 49/177 (27%), Positives = 96/177 (54%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D +++
Sbjct: 289 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 348
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS--R 235
++ LNGE+ V R + + + D++FD L+ +L D+E+ L +++++S + R
Sbjct: 349 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFNLDDSEVALLQAVILLSSATDR 407
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
GL + E +ER + + H +N + + +L+ + DLR + H+ + +
Sbjct: 408 PGLTSVERIERCQEEFLLAFEHYINYRKHKVAHFWPKLLMKVTDLRMIGACHASRFL 464
>UNIPROTKB|F1LQR6 [details] [associations]
symbol:Nr1h4 "Bile acid receptor" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:628831 GO:GO:0008206 GO:GO:0046872
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0071417 GO:GO:0003705 GO:GO:0000980
GO:GO:0001190 GO:GO:0005719 GO:GO:0071229 GO:GO:0004887 OMA:FNKKLPA
GO:GO:2001250 GO:GO:0034255 IPI:IPI00193238
Ensembl:ENSRNOT00000009672 ArrayExpress:F1LQR6 Uniprot:F1LQR6
Length = 487
Score = 218 (81.8 bits), Expect = 8.9e-15, P = 8.9e-15
Identities = 52/175 (29%), Positives = 95/175 (54%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF KR+PGF L H+DQ+ LLK E + +R A +F N +
Sbjct: 303 TEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF----NKKLPAG 358
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 359 HADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREA 418
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 419 VEKLQEPLLDVLQKLCKIYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 473
>UNIPROTKB|Q28037 [details] [associations]
symbol:VDR "Vitamin D3 receptor" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0070644 "vitamin D response
element binding" evidence=IEA] [GO:0060745 "mammary gland branching
involved in pregnancy" evidence=IEA] [GO:0060558 "regulation of
calcidiol 1-monooxygenase activity" evidence=IEA] [GO:0060058
"positive regulation of apoptotic process involved in mammary gland
involution" evidence=IEA] [GO:0050892 "intestinal absorption"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0046697 "decidualization" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045618 "positive
regulation of keratinocyte differentiation" evidence=IEA]
[GO:0010980 "positive regulation of vitamin D 24-hydroxylase
activity" evidence=IEA] [GO:0010839 "negative regulation of
keratinocyte proliferation" evidence=IEA] [GO:0009887 "organ
morphogenesis" evidence=IEA] [GO:0007595 "lactation" evidence=IEA]
[GO:0006874 "cellular calcium ion homeostasis" evidence=IEA]
[GO:0006816 "calcium ion transport" evidence=IEA] [GO:0001501
"skeletal system development" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008434 "vitamin D3 receptor activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000324
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0000122 GO:GO:0009887 GO:GO:0001501 GO:GO:0006816
GO:GO:0006874 GO:GO:0050892 GO:GO:0000902 GO:GO:0007595
GO:GO:0060058 GO:GO:0046697 EMBL:AAFC03056593 GO:GO:0045618
GO:GO:0010980 GO:GO:0010839 GO:GO:0060745 HOVERGEN:HBG108655
HOGENOM:HOG000220844 GO:GO:0070644 KO:K08539 GO:GO:0008434
eggNOG:NOG283526 OrthoDB:EOG4J6RR1 IPI:IPI00706049
RefSeq:NP_001161404.1 UniGene:Bt.61412 ProteinModelPortal:Q28037
SMR:Q28037 STRING:Q28037 PRIDE:Q28037 GeneID:533656 KEGG:bta:533656
CTD:7421 InParanoid:Q28037 BindingDB:Q28037 ChEMBL:CHEMBL3452
NextBio:20876106 GO:GO:0060558 Uniprot:Q28037
Length = 426
Score = 217 (81.4 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 59/186 (31%), Positives = 101/186 (54%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
Q +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 221 QLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTPEDQIVLLKSSAIEVIMLRSNQSFTLD 280
Query: 177 TN-SMICLNGEVL--VRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISP 233
+ S C + + V D + ++ L++ + F L L+L + E L +I ++SP
Sbjct: 281 DDMSWTCGSPDYKYQVSDVTRAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSP 340
Query: 234 SRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSE-- 289
R G+++ LVE ++ +L N L + HP + L A++I L DLR+LN+ HS+
Sbjct: 341 DRPGVQDAALVEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQY 400
Query: 290 KLVAFQ 295
+ ++FQ
Sbjct: 401 RCLSFQ 406
Score = 41 (19.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 31 KREKARILAAMQQSTNTKCTEKALAAELDDEQ-RMLSTVVRAHLDT 75
+R++ IL ++ + + +L +L +EQ R+++T++ AH T
Sbjct: 101 QRKREMILKRKEE----EALKDSLRPKLSEEQQRIITTLLEAHHKT 142
>UNIPROTKB|G8JKV9 [details] [associations]
symbol:NR1H2 "Oxysterols receptor LXR-beta" species:9913
"Bos taurus" [GO:0010875 "positive regulation of cholesterol
efflux" evidence=IEA] [GO:0010867 "positive regulation of
triglyceride biosynthetic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004879 "ligand-activated sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0090340 "positive
regulation of secretion of lysosomal enzymes" evidence=IEA]
[GO:0090187 "positive regulation of pancreatic juice secretion"
evidence=IEA] [GO:0090108 "positive regulation of high-density
lipoprotein particle assembly" evidence=IEA] [GO:0051006 "positive
regulation of lipoprotein lipase activity" evidence=IEA]
[GO:0048550 "negative regulation of pinocytosis" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045861 "negative regulation of
proteolysis" evidence=IEA] [GO:0045723 "positive regulation of
fatty acid biosynthetic process" evidence=IEA] [GO:0044255
"cellular lipid metabolic process" evidence=IEA] [GO:0042632
"cholesterol homeostasis" evidence=IEA] [GO:0032369 "negative
regulation of lipid transport" evidence=IEA] [GO:0032270 "positive
regulation of cellular protein metabolic process" evidence=IEA]
[GO:0010887 "negative regulation of cholesterol storage"
evidence=IEA] [GO:0010884 "positive regulation of lipid storage"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0044255 GO:GO:0010887
GO:GO:0010875 GO:GO:0051006 GO:GO:0010867 GO:GO:0032270
GO:GO:0045723 GeneTree:ENSGT00680000099585 GO:GO:0032369
GO:GO:0048550 InterPro:IPR023257 PRINTS:PR02034 OMA:DEASSAC
EMBL:DAAA02047498 Ensembl:ENSBTAT00000004229 Uniprot:G8JKV9
Length = 498
Score = 218 (81.8 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 49/192 (25%), Positives = 93/192 (48%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P PL + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLKA
Sbjct: 241 PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKA 300
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHLS 218
E++L+ A ++ +T + L +D H + + ++ +F+F+ + L L
Sbjct: 301 STIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLD 360
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
D E L +I + S R ++ VE ++ + L+ P+ ++ L
Sbjct: 361 DAEYALLIAINIFSADRPNVQEPSRVEALQQPYVDALLSYTRIKRPQDQLRFPRMLMKLV 420
Query: 279 DLRTLNQLHSEK 290
LRTL+ +HSE+
Sbjct: 421 SLRTLSSVHSEQ 432
>UNIPROTKB|F1LQ07 [details] [associations]
symbol:Thrb "Thyroid hormone receptor beta" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3858 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 IPI:IPI01016303
Ensembl:ENSRNOT00000008989 ArrayExpress:F1LQ07 Uniprot:F1LQ07
Length = 456
Score = 217 (81.4 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 49/175 (28%), Positives = 90/175 (51%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D +
Sbjct: 262 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSE 321
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 322 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 380
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 381 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 435
>MGI|MGI:98743 [details] [associations]
symbol:Thrb "thyroid hormone receptor beta" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004887 "thyroid
hormone receptor activity" evidence=ISO;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0007605 "sensory
perception of sound" evidence=IMP] [GO:0007621 "negative regulation
of female receptivity" evidence=IMP] [GO:0008016 "regulation of
heart contraction" evidence=IMP] [GO:0008050 "female courtship
behavior" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISO] [GO:0009887 "organ morphogenesis"
evidence=IMP] [GO:0019216 "regulation of lipid metabolic process"
evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISO;TAS] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0032332 "positive regulation of chondrocyte differentiation"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045778 "positive regulation of ossification"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0090181
"regulation of cholesterol metabolic process" evidence=ISO]
[GO:0090207 "regulation of triglyceride metabolic process"
evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:98743 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0008016 GO:GO:0000122 GO:GO:0009887 GO:GO:0007605
GO:GO:0031490 GO:GO:0004887 HOVERGEN:HBG005606 GO:GO:0007621
GO:GO:0008050 GeneTree:ENSGT00680000099662 eggNOG:NOG272726
HOGENOM:HOG000010313 CTD:7068 KO:K08362 OrthoDB:EOG4Z8XWB
OMA:HLIQATW EMBL:S62756 EMBL:S62758 EMBL:U15548 EMBL:U15542
EMBL:U15543 EMBL:U15544 EMBL:U15545 EMBL:U15546 EMBL:U15547
EMBL:AK158826 EMBL:BC089035 EMBL:BC119552 EMBL:BC119553
IPI:IPI00125236 IPI:IPI00125243 PIR:A40377 PIR:A57035
RefSeq:NP_001106888.1 RefSeq:NP_033406.1 UniGene:Mm.32563
UniGene:Mm.489809 ProteinModelPortal:P37242 SMR:P37242
MINT:MINT-3374177 STRING:P37242 PhosphoSite:P37242 PRIDE:P37242
Ensembl:ENSMUST00000022303 Ensembl:ENSMUST00000022304
Ensembl:ENSMUST00000091471 GeneID:21834 KEGG:mmu:21834
UCSC:uc007shk.2 UCSC:uc007sho.2 NextBio:301286 Bgee:P37242
CleanEx:MM_THRB Genevestigator:P37242 GermOnline:ENSMUSG00000021779
Uniprot:P37242
Length = 461
Score = 217 (81.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 49/175 (28%), Positives = 90/175 (51%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D +
Sbjct: 267 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSE 326
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 327 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 385
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 386 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 440
>UNIPROTKB|F1LP32 [details] [associations]
symbol:Thrb "Thyroid hormone receptor beta" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 RGD:3858 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016 GO:GO:0000122
GO:GO:0009887 GO:GO:0007605 GO:GO:0031490 GO:GO:0004887
GO:GO:0007621 GO:GO:0008050 GeneTree:ENSGT00680000099662
IPI:IPI00655326 Ensembl:ENSRNOT00000061402 ArrayExpress:F1LP32
Uniprot:F1LP32
Length = 492
Score = 217 (81.4 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 49/175 (28%), Positives = 90/175 (51%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D +
Sbjct: 298 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSE 357
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 358 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 416
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 417 LACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 471
>UNIPROTKB|F1NWE9 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007621 "negative regulation of female
receptivity" evidence=IEA] [GO:0008016 "regulation of heart
contraction" evidence=IEA] [GO:0008050 "female courtship behavior"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0031490 "chromatin
DNA binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016 GO:GO:0000122
GO:GO:0031490 GO:GO:0004887 GeneTree:ENSGT00680000099662
OMA:HLIQATW EMBL:AADN02001118 EMBL:AADN02001120 EMBL:AADN02001121
EMBL:AADN02001122 EMBL:AADN02001123 EMBL:AADN02001124
EMBL:AADN02001119 IPI:IPI00822476 Ensembl:ENSGALT00000018424
ArrayExpress:F1NWE9 Uniprot:F1NWE9
Length = 445
Score = 215 (80.7 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 251 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 310
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 311 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 369
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
L E +E+ + H +N + +L+ + DLR + H+ + +
Sbjct: 370 LVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLRMIGACHASRFL 424
>MGI|MGI:1352464 [details] [associations]
symbol:Nr1h4 "nuclear receptor subfamily 1, group H, member
4" species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific
DNA binding" evidence=ISO] [GO:0001080 "nitrogen catabolite
activation of transcription from RNA polymerase II promoter"
evidence=IC] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IGI] [GO:0003705 "RNA
polymerase II distal enhancer sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003707 "steroid
hormone receptor activity" evidence=ISO] [GO:0004872 "receptor
activity" evidence=ISO] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IMP] [GO:0004887 "thyroid hormone
receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006109 "regulation of carbohydrate metabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0008206 "bile acid metabolic process" evidence=ISO;IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=IMP]
[GO:0032052 "bile acid binding" evidence=ISO;IMP] [GO:0034255
"regulation of urea metabolic process" evidence=IMP] [GO:0042277
"peptide binding" evidence=ISO] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=IDA] [GO:0071229
"cellular response to acid" evidence=ISO;IMP] [GO:0071417 "cellular
response to organic nitrogen" evidence=IMP] [GO:2000213 "positive
regulation of glutamate metabolic process" evidence=IMP]
[GO:2001250 "positive regulation of ammonia assimilation cycle"
evidence=IMP] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:1352464 GO:GO:0006109
GO:GO:0008206 GO:GO:0046872 GO:GO:0009749 GO:GO:0004879
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0032496 GO:GO:0045944 GO:GO:0003705
GO:GO:0000980 GO:GO:0000122 GO:GO:0042277 GO:GO:0003690
GO:GO:0001190 GO:GO:0005719 GO:GO:0032052 GO:GO:0048565
GO:GO:0071229 GO:GO:0046965 GO:GO:0004887 GO:GO:0001080
GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655 CTD:9971
eggNOG:NOG302915 HOGENOM:HOG000220843 KO:K08537 OMA:FNKKLPA
GO:GO:2001250 GO:GO:0034255 EMBL:U09416 EMBL:U09417 EMBL:U09418
EMBL:AC152417 EMBL:BC015261 IPI:IPI00315411 IPI:IPI00750950
PIR:I49018 PIR:I49019 PIR:I49020 RefSeq:NP_001157172.1
UniGene:Mm.3095 ProteinModelPortal:Q60641 SMR:Q60641 DIP:DIP-443N
STRING:Q60641 PhosphoSite:Q60641 PRIDE:Q60641
Ensembl:ENSMUST00000058126 Ensembl:ENSMUST00000105296 GeneID:20186
KEGG:mmu:20186 InParanoid:Q60641 BindingDB:Q60641 ChEMBL:CHEMBL5343
NextBio:297725 Bgee:Q60641 CleanEx:MM_NR1H4 Genevestigator:Q60641
GermOnline:ENSMUSG00000047638 Uniprot:Q60641
Length = 488
Score = 218 (81.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 51/175 (29%), Positives = 95/175 (54%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K++PGF L H+DQ+ LLK E + +R A +F N +
Sbjct: 304 TEMATSHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF----NKKLPAG 359
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 360 HADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREA 419
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 420 VEKLQEPLLDVLQKLCKMYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 474
Score = 41 (19.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 24/107 (22%), Positives = 39/107 (36%)
Query: 31 KREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRA 90
K ++ R+ + +C L E+ + + L V+ H D A D LR+
Sbjct: 189 KCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTANEDDSEGRDLRQV 248
Query: 91 -------REHPTYTACPSTLACPLNPNSHPLQGQQELLQDF-SERFS 129
RE TA TL + + + + QE+ E FS
Sbjct: 249 TSTTKFCREKTELTADQQTLLDYIMDSYNKQRMPQEITNKILKEEFS 295
>UNIPROTKB|Q96RI1 [details] [associations]
symbol:NR1H4 "Bile acid receptor" species:9606 "Homo
sapiens" [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0006109 "regulation of carbohydrate metabolic process"
evidence=IEA] [GO:0008206 "bile acid metabolic process"
evidence=IEA] [GO:0009749 "response to glucose stimulus"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0042277 "peptide binding" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=IEA] [GO:0048565
"digestive tract development" evidence=IEA] [GO:2001250 "positive
regulation of ammonia assimilation cycle" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0007165
"signal transduction" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0070857 "regulation of bile acid biosynthetic
process" evidence=TAS] [GO:0090181 "regulation of cholesterol
metabolic process" evidence=TAS] [GO:0016922 "ligand-dependent
nuclear receptor binding" evidence=TAS] [GO:0032052 "bile acid
binding" evidence=ISS;TAS] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0000980 "RNA polymerase II distal
enhancer sequence-specific DNA binding" evidence=IDA] [GO:0001190
"RNA polymerase II transcription factor binding transcription
factor activity involved in positive regulation of transcription"
evidence=IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0034255 "regulation of urea metabolic process"
evidence=ISS] [GO:0071417 "cellular response to organic nitrogen"
evidence=ISS] [GO:2000213 "positive regulation of glutamate
metabolic process" evidence=ISS] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=ISS] [GO:0001080 "nitrogen catabolite
activation of transcription from RNA polymerase II promoter"
evidence=IC] [GO:0071229 "cellular response to acid" evidence=IDA]
[GO:0030522 "intracellular receptor mediated signaling pathway"
evidence=ISS] Reactome:REACT_71 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0003714
GO:GO:0005654 GO:GO:0006109 GO:GO:0008206 GO:GO:0046872
GO:GO:0009749 GO:GO:0004879 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0032496
EMBL:CH471054 Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0003705
GO:GO:0000980 GO:GO:0000122 GO:GO:0003713 GO:GO:0090181
GO:GO:0042277 GO:GO:0003690 GO:GO:0001190 GO:GO:0005719
GO:GO:0032052 GO:GO:0048565 GO:GO:0006367 GO:GO:0071229
Orphanet:69665 GO:GO:0016922 GO:GO:0004887 GO:GO:0070857
GO:GO:0001080 PDB:3BEJ PDB:3DCT PDB:3DCU PDB:3FXV PDB:3HC5 PDB:3HC6
PDB:3OKH PDB:3OKI PDB:3OLF PDB:3OMK PDB:3OMM PDB:3OOF PDB:3OOK
PDB:3P88 PDB:3P89 PDB:3RUT PDB:3RUU PDB:3RVF PDBsum:3BEJ
PDBsum:3DCT PDBsum:3DCU PDBsum:3FXV PDBsum:3HC5 PDBsum:3HC6
PDBsum:3OKH PDBsum:3OKI PDBsum:3OLF PDBsum:3OMK PDBsum:3OMM
PDBsum:3OOF PDBsum:3OOK PDBsum:3P88 PDBsum:3P89 PDBsum:3RUT
PDBsum:3RUU PDBsum:3RVF HOVERGEN:HBG108655 CTD:9971
eggNOG:NOG302915 KO:K08537 OrthoDB:EOG4640C0 EMBL:U68233
EMBL:AF384555 EMBL:AF478445 EMBL:AF478446 EMBL:AK296612
EMBL:AC010200 EMBL:BC144183 EMBL:BC144184 EMBL:BC130573
IPI:IPI00045302 IPI:IPI00168867 IPI:IPI00220798 IPI:IPI00410346
IPI:IPI01022446 RefSeq:NP_001193906.1 RefSeq:NP_001193907.1
RefSeq:NP_001193908.1 RefSeq:NP_001193921.1 RefSeq:NP_001193922.1
RefSeq:NP_005114.1 UniGene:Hs.282735 UniGene:Hs.732506 PDB:1OSH
PDB:1OSK PDB:3FLI PDB:3GD2 PDB:3L1B PDBsum:1OSH PDBsum:1OSK
PDBsum:3FLI PDBsum:3GD2 PDBsum:3L1B ProteinModelPortal:Q96RI1
SMR:Q96RI1 DIP:DIP-39370N IntAct:Q96RI1 STRING:Q96RI1
PhosphoSite:Q96RI1 DMDM:46577705 PaxDb:Q96RI1 PRIDE:Q96RI1
DNASU:9971 Ensembl:ENST00000188403 Ensembl:ENST00000392986
Ensembl:ENST00000548884 Ensembl:ENST00000549996
Ensembl:ENST00000551379 GeneID:9971 KEGG:hsa:9971 UCSC:uc001ths.2
UCSC:uc001tht.2 GeneCards:GC12P100850 HGNC:HGNC:7967 HPA:HPA047699
MIM:603826 neXtProt:NX_Q96RI1 PharmGKB:PA31752 InParanoid:Q96RI1
OMA:FNKKLPA PhylomeDB:Q96RI1 BindingDB:Q96RI1 ChEMBL:CHEMBL2047
EvolutionaryTrace:Q96RI1 GenomeRNAi:9971 NextBio:37658
ArrayExpress:Q96RI1 Bgee:Q96RI1 CleanEx:HS_NR1H4
Genevestigator:Q96RI1 GermOnline:ENSG00000012504 GO:GO:2001250
GO:GO:2000213 GO:GO:0034255 Uniprot:Q96RI1
Length = 486
Score = 220 (82.5 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 50/168 (29%), Positives = 95/168 (56%)
Query: 132 IRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRD 191
++ +VEF K++PGF L H+DQ+ LLK E + +R A +F+ + S L+ +
Sbjct: 309 VQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPS----GHSDLLEE 364
Query: 192 SIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGK 250
I +S + + MF F + + L ++ E L ++IV++SP R ++++E VE+++
Sbjct: 365 RIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEP 424
Query: 251 LENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
L ++L + + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 425 LLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 472
Score = 38 (18.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 31 KREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLD 74
K ++ R+ + +C L E+ + + L V+ H D
Sbjct: 188 KCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHAD 231
>UNIPROTKB|F1SRH0 [details] [associations]
symbol:NR1H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001250 "positive regulation of ammonia assimilation
cycle" evidence=IEA] [GO:0071417 "cellular response to organic
nitrogen" evidence=IEA] [GO:0071229 "cellular response to acid"
evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0034255 "regulation of urea metabolic process"
evidence=IEA] [GO:0032052 "bile acid binding" evidence=IEA]
[GO:0008206 "bile acid metabolic process" evidence=IEA] [GO:0005719
"nuclear euchromatin" evidence=IEA] [GO:0003705 "RNA polymerase II
distal enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001190 "RNA polymerase II
transcription factor binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA] [GO:0000980
"RNA polymerase II distal enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0008206 GO:GO:0046872
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0071417 GO:GO:0003705 GO:GO:0000980
GO:GO:0001190 GO:GO:0005719 GO:GO:0071229 GO:GO:0004887
GeneTree:ENSGT00680000099585 OMA:FNKKLPA GO:GO:2001250
GO:GO:0034255 EMBL:CU457429 Ensembl:ENSSSCT00000000958
Uniprot:F1SRH0
Length = 482
Score = 215 (80.7 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 51/175 (29%), Positives = 95/175 (54%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K++PGF L H+DQ+ LLK E + +R A +F N +
Sbjct: 298 TEMATSHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF----NRKLPAG 353
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 354 HTDLLEERIRKSGISDEYITPMFSFYKSIAELKMTQEEYALLTAIVILSPDRQYIKDREA 413
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L +L + + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 414 VEKLQEPLLEVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 468
>UNIPROTKB|H9L323 [details] [associations]
symbol:H9L323 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003074
InterPro:IPR003076 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR01288 PRINTS:PR01289 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0030522
GeneTree:ENSGT00700000104361 EMBL:AADN02041005 EMBL:AADN02041006
Ensembl:ENSGALT00000036096 OMA:IREGSHY Uniprot:H9L323
Length = 393
Score = 211 (79.3 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 70/234 (29%), Positives = 115/234 (49%)
Query: 20 HNAPVRFGRVPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTVVRAHLDTCAFT 79
HNA +RFGR+P+ EKA++ A + N E + E+ D + + + A+L
Sbjct: 101 HNA-IRFGRMPRSEKAKLKAEILTGENY--VEDS---EMADLKSLAKRIHDAYLKNFNMN 154
Query: 80 ADKIEPMLR-RAREHPTY------TACPS--TLACPLNPNSHPLQGQQELLQDFS--ERF 128
K +L + +P + T C + TL L N +Q ++ ++ F +
Sbjct: 155 KVKARVILAGKTNNNPPFVIHDMDTLCMAEKTLVAKLVANG--IQNKEAEVRIFHCCQCT 212
Query: 129 S-PTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEV 187
S T+ ++ EFAK IPGFS L +DQVTLLK GV+E + LA + + ++
Sbjct: 213 SVETVTELTEFAKSIPGFSNLDLNDQVTLLKYGVYEAIFAMLASVMNKD-GMLVAYGNGF 271
Query: 188 LVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ R+ + S F +M+ FDFA + N L L D++I LF + ++ S +R
Sbjct: 272 ITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGVSSKIR 325
>UNIPROTKB|J9P1S1 [details] [associations]
symbol:NR1H4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099585 EMBL:AAEX03009974
Ensembl:ENSCAFT00000044453 Uniprot:J9P1S1
Length = 472
Score = 210 (79.0 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 51/175 (29%), Positives = 94/175 (53%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K +PGF L H+DQ+ LLK E + +R A +F N +
Sbjct: 288 TEMATSHVQILVEFTKTLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF----NKKLPAG 343
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 344 HADLLEERIRKSGISDEYITPMFSFYKSVAELKMTQEEYALLTAIVILSPDRQYIKDREA 403
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 404 VEKLQEPLLDVLQKLCKIYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 458
>UNIPROTKB|E2RCF6 [details] [associations]
symbol:NR1H4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2001250 "positive regulation of ammonia
assimilation cycle" evidence=IEA] [GO:0071417 "cellular response to
organic nitrogen" evidence=IEA] [GO:0071229 "cellular response to
acid" evidence=IEA] [GO:0046965 "retinoid X receptor binding"
evidence=IEA] [GO:0034255 "regulation of urea metabolic process"
evidence=IEA] [GO:0032052 "bile acid binding" evidence=IEA]
[GO:0008206 "bile acid metabolic process" evidence=IEA] [GO:0005719
"nuclear euchromatin" evidence=IEA] [GO:0003705 "RNA polymerase II
distal enhancer sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001190 "RNA polymerase II
transcription factor binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA] [GO:0000980
"RNA polymerase II distal enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0008206 GO:GO:0046872
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0071417 GO:GO:0003705 GO:GO:0000980
GO:GO:0001190 GO:GO:0005719 GO:GO:0071229 GO:GO:0004887
GeneTree:ENSGT00680000099585 OMA:FNKKLPA GO:GO:2001250
GO:GO:0034255 EMBL:AAEX03009974 Ensembl:ENSCAFT00000011000
Uniprot:E2RCF6
Length = 481
Score = 210 (79.0 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 51/175 (29%), Positives = 94/175 (53%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K +PGF L H+DQ+ LLK E + +R A +F N +
Sbjct: 297 TEMATSHVQILVEFTKTLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF----NKKLPAG 352
Query: 185 GEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 353 HADLLEERIRKSGISDEYITPMFSFYKSVAELKMTQEEYALLTAIVILSPDRQYIKDREA 412
Query: 244 VERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + PE A L+ L +LRT N H+E L+++++ +
Sbjct: 413 VEKLQEPLLDVLQKLCKIYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 467
>UNIPROTKB|F1MTT1 [details] [associations]
symbol:NR1H4 "Bile acid receptor" species:9913 "Bos taurus"
[GO:2001250 "positive regulation of ammonia assimilation cycle"
evidence=IEA] [GO:0071417 "cellular response to organic nitrogen"
evidence=IEA] [GO:0071229 "cellular response to acid" evidence=IEA]
[GO:0046965 "retinoid X receptor binding" evidence=IEA] [GO:0034255
"regulation of urea metabolic process" evidence=IEA] [GO:0032052
"bile acid binding" evidence=IEA] [GO:0008206 "bile acid metabolic
process" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0000980 "RNA
polymerase II distal enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0008206 GO:GO:0046872
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0071417 GO:GO:0003705 GO:GO:0000980
GO:GO:0001190 GO:GO:0005719 GO:GO:0071229 GO:GO:0004887
GeneTree:ENSGT00680000099585 IPI:IPI00695612 UniGene:Bt.48865
OMA:FNKKLPA GO:GO:2001250 GO:GO:0034255 EMBL:DAAA02013677
EMBL:DAAA02013678 Ensembl:ENSBTAT00000018079 Uniprot:F1MTT1
Length = 482
Score = 210 (79.0 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 50/176 (28%), Positives = 97/176 (55%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K++PGF L H+DQ+ LLK E + +R A +F + +
Sbjct: 298 TEMATSHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFSKKLPA----- 352
Query: 185 GEV-LVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 353 GHTDLLEERIRKSGISDEYITPMFSFYKSVAELKMTQEEYALLTAIVILSPDRQYIKDRE 412
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + + PE A L+ L +LRT N H++ L+++++ +
Sbjct: 413 AVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHADMLMSWRVND 468
>UNIPROTKB|Q3SZL0 [details] [associations]
symbol:NR1H4 "Bile acid receptor" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HSSP:P03372
HOVERGEN:HBG108655 EMBL:BC102805 IPI:IPI00695612
RefSeq:NP_001029880.1 UniGene:Bt.48865 ProteinModelPortal:Q3SZL0
SMR:Q3SZL0 STRING:Q3SZL0 PRIDE:Q3SZL0 GeneID:540528 KEGG:bta:540528
CTD:9971 eggNOG:NOG302915 HOGENOM:HOG000220843 InParanoid:Q3SZL0
KO:K08537 OrthoDB:EOG4640C0 NextBio:20878685 Uniprot:Q3SZL0
Length = 482
Score = 210 (79.0 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 50/176 (28%), Positives = 97/176 (55%)
Query: 125 SERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLN 184
+E + ++ +VEF K++PGF L H+DQ+ LLK E + +R A +F + +
Sbjct: 298 TEMATSHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFSKKLPA----- 352
Query: 185 GEV-LVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKE 242
G L+ + I S + + MF F + + L ++ E L ++IV++SP R ++++E
Sbjct: 353 GHTDLLEERIRKSGISDEYITPMFSFYKSVAELKMTQEEYALLTAIVILSPDRQYIKDRE 412
Query: 243 LVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
VE+++ L ++L + + PE A L+ L +LRT N H++ L+++++ +
Sbjct: 413 AVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHADMLMSWRVND 468
>UNIPROTKB|F8VZR5 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:AL662824
EMBL:AL844527 EMBL:CR759733 EMBL:CR936877 EMBL:CR354565
HGNC:HGNC:10478 ChiTaRS:RXRB IPI:IPI01022583 SMR:F8VZR5
Ensembl:ENST00000546472 Ensembl:ENST00000548862
Ensembl:ENST00000549199 Ensembl:ENST00000552454
Ensembl:ENST00000552822 Uniprot:F8VZR5
Length = 389
Score = 206 (77.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 206 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 265
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 266 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 325
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 326 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 368
>UNIPROTKB|F8VNP5 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AL662824 EMBL:AL844527 EMBL:CR759733
EMBL:CR936877 EMBL:CR354565 HGNC:HGNC:10478 ChiTaRS:RXRB
IPI:IPI01020693 SMR:F8VNP5 Ensembl:ENST00000546468
Ensembl:ENST00000547763 Ensembl:ENST00000549662
Ensembl:ENST00000550626 Ensembl:ENST00000550731 Uniprot:F8VNP5
Length = 392
Score = 206 (77.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 209 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 268
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 269 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 328
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 329 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 371
>UNIPROTKB|F1NWF0 [details] [associations]
symbol:THRB "Thyroid hormone receptor beta" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 EMBL:AADN02001118 EMBL:AADN02001120
EMBL:AADN02001121 EMBL:AADN02001122 EMBL:AADN02001123
EMBL:AADN02001124 EMBL:AADN02001119 IPI:IPI00587738
Ensembl:ENSGALT00000018423 ArrayExpress:F1NWF0 Uniprot:F1NWF0
Length = 363
Score = 204 (76.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 48/164 (29%), Positives = 86/164 (52%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D ++
Sbjct: 201 EAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 260
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ LNGE+ V R + + + D++FD L+ +L DTE+ L +++++S R G
Sbjct: 261 TLT-LNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPG 319
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLR 281
L E +E+ + H +N + +L+ + DLR
Sbjct: 320 LVCVERIEKCQEGFLLAFEHYINYRKHHVAHFWPKLLMKVTDLR 363
>ZFIN|ZDB-GENE-000210-31 [details] [associations]
symbol:vdra "vitamin D receptor a" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008434 "vitamin
D3 receptor activity" evidence=IEA] [GO:0005499 "vitamin D binding"
evidence=IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISS;IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS;IDA] [GO:0055074 "calcium ion
homeostasis" evidence=IMP] [GO:0001503 "ossification" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] InterPro:IPR000324
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00350 PRINTS:PR00398 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-000210-31
GO:GO:0005634 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0001503 GO:GO:0055074 GO:GO:0005499
GO:GO:0070561 PDB:2HBH PDB:2HC4 PDB:2HCD PDB:3DR1 PDB:4G1D PDB:4G1Y
PDB:4G1Z PDB:4G20 PDB:4G21 PDB:4G2H PDBsum:2HBH PDBsum:2HC4
PDBsum:2HCD PDBsum:3DR1 PDBsum:4G1D PDBsum:4G1Y PDBsum:4G1Z
PDBsum:4G20 PDBsum:4G21 PDBsum:4G2H PDB:3O1D PDB:3O1E PDB:4FHH
PDB:4FHI PDBsum:3O1D PDBsum:3O1E PDBsum:4FHH PDBsum:4FHI
HOVERGEN:HBG108655 EMBL:AF164512 EMBL:BC162213 EMBL:BC162226
IPI:IPI00495038 RefSeq:NP_570994.1 UniGene:Dr.81313 PRIDE:Q9PTN2
GeneID:30076 KEGG:dre:30076 CTD:30076 KO:K08539
EvolutionaryTrace:Q9PTN2 NextBio:20806561 GO:GO:0008434
Uniprot:Q9PTN2
Length = 453
Score = 210 (79.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 54/185 (29%), Positives = 98/185 (52%)
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
Q + +L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ E++++R F
Sbjct: 249 QSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFS 308
Query: 175 SQTNSMICLNGEV--LVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
+ S C + + D + + L++ + F L L L + E L +I ++S
Sbjct: 309 LEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLS 368
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL- 291
P R G+++ +E ++ +L ++L + HP L A++I L DLR+LN+ HS++
Sbjct: 369 PDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYR 428
Query: 292 -VAFQ 295
++FQ
Sbjct: 429 SLSFQ 433
Score = 37 (18.1 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 48 KCTEKALAAELDDEQ-RMLSTVVRAHLDT 75
+ +A L DEQ ++++++V AH T
Sbjct: 146 EAAREARKPRLSDEQMQIINSLVEAHHKT 174
>UNIPROTKB|A6H7I6 [details] [associations]
symbol:RXRB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 OMA:FLPERHA EMBL:DAAA02054891
EMBL:BC146260 IPI:IPI00709103 UniGene:Bt.57603 SMR:A6H7I6
STRING:A6H7I6 Ensembl:ENSBTAT00000000860 InParanoid:A6H7I6
Uniprot:A6H7I6
Length = 532
Score = 206 (77.6 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 408
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 511
>UNIPROTKB|A5D9P3 [details] [associations]
symbol:RXRB "Retinoid X receptor, beta" species:9823 "Sus
scrofa" [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525 CTD:6257 EMBL:CT737383
EMBL:BX640585 RefSeq:NP_001177175.1 UniGene:Ssc.1598
ProteinModelPortal:A5D9P3 SMR:A5D9P3 STRING:A5D9P3
Ensembl:ENSSSCT00000036123 GeneID:100156801 KEGG:ssc:100156801
OMA:FLPERHA Uniprot:A5D9P3
Length = 532
Score = 206 (77.6 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 408
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 409 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 468
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 469 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 511
>UNIPROTKB|Q5TJF7 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AJ630366 HOVERGEN:HBG005606 HOGENOM:HOG000260821
InterPro:IPR021780 Pfam:PF11825 ProteinModelPortal:Q5TJF7
SMR:Q5TJF7 STRING:Q5TJF7 Uniprot:Q5TJF7
Length = 533
Score = 206 (77.6 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 350 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 409
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 512
>UNIPROTKB|P28702 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0004886 "9-cis retinoic acid receptor activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IEA]
[GO:0060038 "cardiac muscle cell proliferation" evidence=IEA]
[GO:0071300 "cellular response to retinoic acid" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0004879 "ligand-activated
sequence-specific DNA binding RNA polymerase II transcription
factor activity" evidence=IDA] Reactome:REACT_71 InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:a6b1_a6b4_integrin_pathway GO:GO:0005654
GO:GO:0046872 eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0071300 GO:GO:0045944 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0044212 GO:GO:0003713 GO:GO:0030375
Pathway_Interaction_DB:retinoic_acid_pathway DrugBank:DB00755
DrugBank:DB00459 Pathway_Interaction_DB:ar_tf_pathway GO:GO:0006367
EMBL:AL031228 GO:GO:0060038 EMBL:AL645940 EMBL:AL662824
EMBL:AL844527 EMBL:CR759733 EMBL:CR936877 HOVERGEN:HBG005606
DrugBank:DB00307 GO:GO:0055012 PDB:1UHL PDBsum:1UHL
DrugBank:DB00523 DrugBank:DB00926 DrugBank:DB00210 DrugBank:DB00799
HOGENOM:HOG000260821 OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525
EMBL:M84820 EMBL:X63522 EMBL:AF065396 EMBL:AF120161 EMBL:HQ709179
EMBL:AB209244 EMBL:CR354565 EMBL:BC001167 EMBL:X66424
IPI:IPI00426305 IPI:IPI00607575 PIR:S37781 RefSeq:NP_068811.1
UniGene:Hs.388034 PDB:1H9U PDBsum:1H9U ProteinModelPortal:P28702
SMR:P28702 IntAct:P28702 MINT:MINT-1365658 STRING:P28702
PhosphoSite:P28702 DMDM:1350911 PaxDb:P28702 PRIDE:P28702
DNASU:6257 Ensembl:ENST00000374680 Ensembl:ENST00000374685
Ensembl:ENST00000383217 Ensembl:ENST00000415157
Ensembl:ENST00000415909 Ensembl:ENST00000431820
Ensembl:ENST00000436753 GeneID:6257 KEGG:hsa:6257 UCSC:uc003odb.3
CTD:6257 GeneCards:GC06M033161 HGNC:HGNC:10478 HPA:CAB002003
MIM:180246 neXtProt:NX_P28702 PharmGKB:PA34891 PhylomeDB:P28702
BindingDB:P28702 ChEMBL:CHEMBL1870 ChiTaRS:RXRB
EvolutionaryTrace:P28702 GenomeRNAi:6257 NextBio:24299
ArrayExpress:P28702 Bgee:P28702 CleanEx:HS_RXRB
Genevestigator:P28702 GermOnline:ENSG00000204231 Uniprot:P28702
Length = 533
Score = 206 (77.6 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 350 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 409
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 410 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYA 469
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 470 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 512
>RGD|3611 [details] [associations]
symbol:Rxrb "retinoid X receptor beta" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=ISO] [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030375 "thyroid hormone
receptor coactivator activity" evidence=IDA] [GO:0031641 "regulation
of myelination" evidence=IDA] [GO:0042809 "vitamin D receptor
binding" evidence=IDA] [GO:0042974 "retinoic acid receptor binding"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0046966 "thyroid hormone receptor binding" evidence=IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IDA]
[GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISO]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=ISO] [GO:0060038 "cardiac muscle cell proliferation"
evidence=ISO] [GO:0071300 "cellular response to retinoic acid"
evidence=ISO] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3611 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0045944 GO:GO:0044212 GO:GO:0030375 GO:GO:0046982 GO:GO:0042974
GO:GO:0046966 GO:GO:0060038 GO:GO:0031641 HOVERGEN:HBG005606
GO:GO:0042809 GO:GO:0055012 OrthoDB:EOG4SJ5DV GO:GO:0004886
EMBL:M81766 IPI:IPI00394256 PIR:A41651 UniGene:Rn.49295
ProteinModelPortal:P49743 SMR:P49743 STRING:P49743 PhosphoSite:P49743
UCSC:RGD:3611 InParanoid:P49743 BindingDB:P49743 ChEMBL:CHEMBL2805
ArrayExpress:P49743 Genevestigator:P49743
GermOnline:ENSRNOG00000000464 Uniprot:P49743
Length = 458
Score = 204 (76.9 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 275 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 334
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 335 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 394
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 395 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 437
>UNIPROTKB|B3KY83 [details] [associations]
symbol:RXRA "cDNA FLJ16020 fis, clone BRAMY2003287, highly
similar to RETINOIC ACID RECEPTOR RXR-ALPHA" species:9606 "Homo
sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0004886 "9-cis retinoic acid receptor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0060038 "cardiac muscle cell
proliferation" evidence=IEA] [GO:0060528 "secretory columnal
luminar epithelial cell differentiation involved in prostate
glandular acinus development" evidence=IEA] [GO:0060687 "regulation
of branching involved in prostate gland morphogenesis"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0008285
GO:GO:0032869 GO:GO:0045471 GO:GO:0046872 GO:GO:0007568
GO:GO:0030424 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0006954
GO:GO:0045944 GO:GO:0051384 GO:GO:0007565 GO:GO:0001889
GO:GO:0007494 GO:GO:0044212 GO:GO:0043065 GO:GO:0032526
GO:GO:0003690 GO:GO:0001890 GO:GO:0033189 GO:GO:0010269
GO:GO:0031490 GO:GO:0033280 GO:GO:0031103 GO:GO:0060038
GO:GO:0055010 GO:GO:0060687 HOVERGEN:HBG005606 GO:GO:0060528
GO:GO:0055012 GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
EMBL:AC156789 EMBL:AL354796 EMBL:AL669970 EMBL:AL683798
UniGene:Hs.590886 HGNC:HGNC:10477 EMBL:AK131192 IPI:IPI01011260
SMR:B3KY83 STRING:B3KY83 Ensembl:ENST00000540193 Uniprot:B3KY83
Length = 365
Score = 201 (75.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 182 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 241
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 242 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 301
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 302 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 344
>UNIPROTKB|P51128 [details] [associations]
symbol:rxra "Retinoic acid receptor RXR-alpha" species:8355
"Xenopus laevis" [GO:0046966 "thyroid hormone receptor binding"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
HOVERGEN:HBG005606 InterPro:IPR021780 Pfam:PF11825 EMBL:L11446
PIR:C41977 ProteinModelPortal:P51128 SMR:P51128 Uniprot:P51128
Length = 488
Score = 204 (76.9 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 53/163 (32%), Positives = 86/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 305 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 364
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 365 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYA 424
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 425 SLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 467
>ZFIN|ZDB-GENE-980526-36 [details] [associations]
symbol:rxrga "retinoid x receptor, gamma a"
species:7955 "Danio rerio" [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0004886 "9-cis
retinoic acid receptor activity" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-980526-36 GO:GO:0005634
GO:GO:0046872 eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 HOVERGEN:HBG005606 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 KO:K08524 EMBL:U29940 EMBL:BC059576
IPI:IPI00511229 PIR:I50515 RefSeq:NP_571292.2 UniGene:Dr.348
ProteinModelPortal:Q90416 SMR:Q90416 STRING:Q90416 GeneID:30464
KEGG:dre:30464 CTD:30464 OrthoDB:EOG42RD7K NextBio:20806858
ArrayExpress:Q90416 Uniprot:Q90416
Length = 441
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R S H
Sbjct: 258 LVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAH 317
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 318 SAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 377
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L N+P+Q A+L+ LP LR++ E L F++
Sbjct: 378 SLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 420
>MGI|MGI:98215 [details] [associations]
symbol:Rxrb "retinoid X receptor beta" species:10090 "Mus
musculus" [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0001893 "maternal placenta development"
evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=ISO;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0030375 "thyroid hormone receptor
coactivator activity" evidence=ISO] [GO:0031641 "regulation of
myelination" evidence=ISO] [GO:0042809 "vitamin D receptor binding"
evidence=ISO] [GO:0042974 "retinoic acid receptor binding"
evidence=ISO] [GO:0043401 "steroid hormone mediated signaling
pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IGI] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0048384 "retinoic
acid receptor signaling pathway" evidence=IDA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IGI;IMP]
[GO:0060038 "cardiac muscle cell proliferation" evidence=IGI]
[GO:0071300 "cellular response to retinoic acid" evidence=IDA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:98215 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300
GO:GO:0001701 GO:GO:0045944 GO:GO:0044212 GO:GO:0001893
EMBL:AF100956 GO:GO:0060038 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 GO:GO:0055012 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 KO:K08525 CTD:6257 EMBL:D21831
EMBL:BC049773 EMBL:M84818 EMBL:M26804 EMBL:X66224 IPI:IPI00226615
IPI:IPI00890271 PIR:A34418 PIR:D41727 PIR:I84718 PIR:S26669
RefSeq:NP_001192145.1 RefSeq:NP_035436.1 UniGene:Mm.1243
ProteinModelPortal:P28704 SMR:P28704 IntAct:P28704 STRING:P28704
PhosphoSite:P28704 PaxDb:P28704 PRIDE:P28704
Ensembl:ENSMUST00000116612 GeneID:20182 KEGG:mmu:20182
UCSC:uc008ixs.1 InParanoid:P28704 BindingDB:P28704
ChEMBL:CHEMBL4047 NextBio:297709 Bgee:P28704 CleanEx:MM_RXRB
Genevestigator:P28704 GermOnline:ENSMUSG00000039656 Uniprot:P28704
Length = 520
Score = 204 (76.9 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 337 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 396
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R K+
Sbjct: 397 SAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA 456
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 457 SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 499
>UNIPROTKB|H9KYR9 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001503
"ossification" evidence=IEA] [GO:0002153 "steroid receptor RNA
activator RNA binding" evidence=IEA] [GO:0002155 "regulation of
thyroid hormone mediated signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008016 "regulation of heart contraction" evidence=IEA]
[GO:0008050 "female courtship behavior" evidence=IEA] [GO:0009409
"response to cold" evidence=IEA] [GO:0010831 "positive regulation
of myotube differentiation" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0017055 "negative regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0030878 "thyroid gland development" evidence=IEA]
[GO:0031490 "chromatin DNA binding" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0033032 "regulation of
myeloid cell apoptotic process" evidence=IEA] [GO:0042994
"cytoplasmic sequestering of transcription factor" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045925 "positive regulation of female
receptivity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050994 "regulation of lipid catabolic process" evidence=IEA]
[GO:0070324 "thyroid hormone binding" evidence=IEA] [GO:2000143
"negative regulation of DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 Pfam:PF00104 PRINTS:PR00398
PRINTS:PR00546 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0003707 Gene3D:1.10.565.10 SUPFAM:SSF48508
GO:GO:0004887 GeneTree:ENSGT00680000099662 EMBL:AADN02064551
Ensembl:ENSGALT00000000352 OMA:MSSGARG Uniprot:H9KYR9
Length = 135
Score = 181 (68.8 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 37/115 (32%), Positives = 71/115 (61%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D ++
Sbjct: 21 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 80
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
++ L+GE+ V R+ + + + D++FD + L+ +L DTE+ L +++++S
Sbjct: 81 TLT-LSGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMS 134
>UNIPROTKB|Q0VC20 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K EMBL:BC120391
IPI:IPI00712482 RefSeq:NP_001068876.1 UniGene:Bt.11333
ProteinModelPortal:Q0VC20 SMR:Q0VC20 STRING:Q0VC20 PRIDE:Q0VC20
Ensembl:ENSBTAT00000022350 GeneID:509500 KEGG:bta:509500 CTD:6258
InParanoid:Q0VC20 KO:K08526 OMA:FMKFPTG NextBio:20868991
Uniprot:Q0VC20
Length = 463
Score = 202 (76.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 442
>UNIPROTKB|E2RD69 [details] [associations]
symbol:RXRG "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0004886 "9-cis
retinoic acid receptor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GeneTree:ENSGT00690000101777 GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 CTD:6258 KO:K08526 OMA:FMKFPTG EMBL:AAEX03018391
RefSeq:XP_536146.2 ProteinModelPortal:E2RD69
Ensembl:ENSCAFT00000021179 GeneID:478989 KEGG:cfa:478989
NextBio:20854245 Uniprot:E2RD69
Length = 463
Score = 202 (76.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 442
>UNIPROTKB|P48443 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0004886 "9-cis retinoic
acid receptor activity" evidence=IEA] [GO:0007422 "peripheral
nervous system development" evidence=IEA] [GO:0007507 "heart
development" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0031641 "regulation of myelination" evidence=IEA]
[GO:0032526 "response to retinoic acid" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:a6b1_a6b4_integrin_pathway GO:GO:0005654
GO:GO:0007507 GO:GO:0030182 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0007422
EMBL:CH471067 Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0032526
Pathway_Interaction_DB:retinoic_acid_pathway DrugBank:DB00755
DrugBank:DB00459 Pathway_Interaction_DB:ar_tf_pathway GO:GO:0006367
GO:GO:0007519 HOVERGEN:HBG005606 EMBL:AL160058 DrugBank:DB00523
DrugBank:DB00926 DrugBank:DB00210 HOGENOM:HOG000260821
GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K
CTD:6258 KO:K08526 OMA:FMKFPTG EMBL:U38480 EMBL:CR456705
EMBL:BC012063 IPI:IPI00009736 RefSeq:NP_001243500.1
RefSeq:NP_008848.1 UniGene:Hs.26550 PDB:2GL8 PDBsum:2GL8
ProteinModelPortal:P48443 SMR:P48443 DIP:DIP-56220N IntAct:P48443
MINT:MINT-1378806 STRING:P48443 PhosphoSite:P48443 DMDM:1350913
PaxDb:P48443 PRIDE:P48443 DNASU:6258 Ensembl:ENST00000359842
GeneID:6258 KEGG:hsa:6258 UCSC:uc001gda.3 GeneCards:GC01M165370
HGNC:HGNC:10479 HPA:CAB002615 MIM:180247 neXtProt:NX_P48443
PharmGKB:PA34892 InParanoid:P48443 PhylomeDB:P48443
BindingDB:P48443 ChEMBL:CHEMBL2004 EvolutionaryTrace:P48443
GenomeRNAi:6258 NextBio:24303 ArrayExpress:P48443 Bgee:P48443
CleanEx:HS_RXRG Genevestigator:P48443 GermOnline:ENSG00000143171
Uniprot:P48443
Length = 463
Score = 202 (76.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 442
>UNIPROTKB|Q0GFF6 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K CTD:6258
KO:K08526 OMA:FMKFPTG EMBL:DQ866834 EMBL:AY429474
RefSeq:NP_001123685.1 UniGene:Ssc.19608 ProteinModelPortal:Q0GFF6
SMR:Q0GFF6 STRING:Q0GFF6 Ensembl:ENSSSCT00000006936 GeneID:445465
KEGG:ssc:445465 Uniprot:Q0GFF6
Length = 463
Score = 202 (76.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 442
>MGI|MGI:98216 [details] [associations]
symbol:Rxrg "retinoid X receptor gamma" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0031641
"regulation of myelination" evidence=ISO] [GO:0043401 "steroid
hormone mediated signaling pathway" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IGI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IDA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:98216 GO:GO:0005634
GO:GO:0007507 GO:GO:0030182 GO:GO:0046872 eggNOG:NOG327099
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0007422
GO:GO:0032526 GO:GO:0007519 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K CTD:6258
KO:K08526 OMA:FMKFPTG EMBL:M84819 EMBL:X66225 EMBL:S62948
EMBL:BC058401 IPI:IPI00124345 PIR:B41727 PIR:S26670
RefSeq:NP_001153203.1 RefSeq:NP_033133.1 UniGene:Mm.3475
ProteinModelPortal:P28705 SMR:P28705 STRING:P28705
PhosphoSite:P28705 PRIDE:P28705 Ensembl:ENSMUST00000015987
Ensembl:ENSMUST00000111384 Ensembl:ENSMUST00000111386 GeneID:20183
KEGG:mmu:20183 UCSC:uc007dla.2 InParanoid:P28705 BindingDB:P28705
ChEMBL:CHEMBL4402 NextBio:297713 Bgee:P28705 CleanEx:MM_RXRG
Genevestigator:P28705 GermOnline:ENSMUSG00000015843 Uniprot:P28705
Length = 463
Score = 202 (76.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 442
>RGD|620046 [details] [associations]
symbol:Rxrg "retinoid X receptor gamma" species:10116 "Rattus
norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0007422
"peripheral nervous system development" evidence=IEP] [GO:0007507
"heart development" evidence=IEP] [GO:0007519 "skeletal muscle
tissue development" evidence=IEP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0014070 "response to organic cyclic compound"
evidence=IEP] [GO:0030182 "neuron differentiation" evidence=IEP]
[GO:0031641 "regulation of myelination" evidence=IDA] [GO:0032526
"response to retinoic acid" evidence=IEP] [GO:0032870 "cellular
response to hormone stimulus" evidence=IEP] [GO:0043565
"sequence-specific DNA binding" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=ISO] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 RGD:620046
GO:GO:0005634 GO:GO:0007507 GO:GO:0030182 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0007422 GO:GO:0014070 GO:GO:0032526 GO:GO:0032870
GO:GO:0031641 GO:GO:0007519 HOVERGEN:HBG005606
GeneTree:ENSGT00690000101777 HSSP:P19793 HOGENOM:HOG000260821
GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K
CTD:6258 KO:K08526 OMA:FMKFPTG EMBL:BC091363 IPI:IPI00363863
RefSeq:NP_113953.1 UniGene:Rn.40816 ProteinModelPortal:Q5BJR8
SMR:Q5BJR8 STRING:Q5BJR8 PhosphoSite:Q5BJR8
Ensembl:ENSRNOT00000006117 GeneID:83574 KEGG:rno:83574
UCSC:RGD:620046 InParanoid:Q5BJR8 BindingDB:Q5BJR8
ChEMBL:CHEMBL4277 NextBio:616077 ArrayExpress:Q5BJR8
Genevestigator:Q5BJR8 Uniprot:Q5BJR8
Length = 463
Score = 202 (76.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 442
>ZFIN|ZDB-GENE-990415-243 [details] [associations]
symbol:rxrab "retinoid x receptor, alpha b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=ISS;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-990415-243 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
HOVERGEN:HBG005606 EMBL:U29894 IPI:IPI00481196 PIR:I50514
RefSeq:NP_571228.1 UniGene:Dr.624 ProteinModelPortal:Q90415
SMR:Q90415 STRING:Q90415 GeneID:793011 KEGG:dre:793011 CTD:793011
HOGENOM:HOG000260821 InParanoid:Q90415 OrthoDB:EOG4SJ5DV
NextBio:20931280 ArrayExpress:Q90415 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 Uniprot:Q90415
Length = 379
Score = 199 (75.1 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 71/272 (26%), Positives = 123/272 (45%)
Query: 29 VPKREKARILAAMQQSTNTKCTEKALAAELDDEQRMLSTV-VRAHLDTCAFTADKIEPML 87
+ KR++ R Q KC + E E+R + A CA +E +L
Sbjct: 98 IDKRQRNRCQYCRYQ----KCLAMGMKREAVQEERQRAKERSEAEFGGCANEDMPVEKIL 153
Query: 88 RR--AREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGF 145
A E T T + L+ N + P+ + Q ++ + +VE+AKRIP F
Sbjct: 154 EAELAVEPKTETYVEANLSPSANSPNDPVTN---ICQAADKQ----LFTLVEWAKRIPHF 206
Query: 146 SLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSM 205
S L DDQV LL+AG E+L+ + + + ++ G + R+S H++ + D +
Sbjct: 207 SDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRV 266
Query: 206 F-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP 264
+ ++ + + TE+G +IV+ +P GL N VE +R ++ L +P
Sbjct: 267 LTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYP 326
Query: 265 EQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+Q A+L+ LP LR++ E L F++
Sbjct: 327 DQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 358
>UNIPROTKB|P19793 [details] [associations]
symbol:RXRA "Retinoic acid receptor RXR-alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IEA]
[GO:0004886 "9-cis retinoic acid receptor activity" evidence=IEA]
[GO:0007566 "embryo implantation" evidence=IEA] [GO:0031490
"chromatin DNA binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=IEA]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0060528 "secretory columnal luminar epithelial
cell differentiation involved in prostate glandular acinus
development" evidence=IEA] [GO:0060687 "regulation of branching
involved in prostate gland morphogenesis" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0044323 "retinoic acid-responsive element
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0035357 "peroxisome proliferator activated receptor signaling
pathway" evidence=IDA] [GO:0019048 "virus-host interaction"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0006766 "vitamin metabolic process" evidence=TAS]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044255 "cellular lipid metabolic process"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] [GO:0003708 "retinoic acid receptor activity"
evidence=TAS] [GO:0008203 "cholesterol metabolic process"
evidence=TAS] [GO:0032526 "response to retinoic acid" evidence=IMP]
[GO:0048384 "retinoic acid receptor signaling pathway"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0070644 "vitamin D response element binding"
evidence=IDA] [GO:0042809 "vitamin D receptor binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] Reactome:REACT_71
Reactome:REACT_111217 InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430
Pathway_Interaction_DB:a6b1_a6b4_integrin_pathway
Reactome:REACT_111045 GO:GO:0019048 GO:GO:0008285 GO:GO:0005654
GO:GO:0032869 GO:GO:0045471 GO:GO:0046872 GO:GO:0007568
GO:GO:0030424 eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
EMBL:CH471090 GO:GO:0006954 GO:GO:0045944 GO:GO:0051384
GO:GO:0007565 GO:GO:0008203 GO:GO:0001889 GO:GO:0044255
Pathway_Interaction_DB:rxr_vdr_pathway GO:GO:0007494 GO:GO:0000122
GO:GO:0043065 GO:GO:0000790 GO:GO:0003713 GO:GO:0032526
GO:GO:0003690 GO:GO:0046982 GO:GO:0001890
Pathway_Interaction_DB:retinoic_acid_pathway GO:GO:0033189
DrugBank:DB00459 Pathway_Interaction_DB:ar_tf_pathway GO:GO:0006367
GO:GO:0010269 GO:GO:0031490 GO:GO:0033280 GO:GO:0031103
GO:GO:0060038 GO:GO:0055010 GO:GO:0060687 HOVERGEN:HBG005606
GO:GO:0006766 PDB:1R0N PDBsum:1R0N GO:GO:0060528 GO:GO:0035357
GO:GO:0055012 GO:GO:0044323 PDB:1FM6 PDB:1FM9 PDB:1K74 PDB:1RDT
PDB:1XV9 PDB:1XVP PDB:3H0A PDBsum:1FM6 PDBsum:1FM9 PDBsum:1K74
PDBsum:1RDT PDBsum:1XV9 PDBsum:1XVP PDBsum:3H0A PDB:1MV9 PDB:1MVC
PDB:1MZN PDB:2P1T PDB:2P1U PDB:2P1V PDB:2ZXZ PDB:2ZY0 PDB:3DZU
PDB:3DZY PDB:3E00 PDB:3E94 PDB:3FUG PDB:3KWY PDB:3OAP PDB:3OZJ
PDB:3PCU PDB:3R5M PDBsum:1MV9 PDBsum:1MVC PDBsum:1MZN PDBsum:2P1T
PDBsum:2P1U PDBsum:2P1V PDBsum:2ZXZ PDBsum:2ZY0 PDBsum:3DZU
PDBsum:3DZY PDBsum:3E00 PDBsum:3E94 PDBsum:3FUG PDBsum:3KWY
PDBsum:3OAP PDBsum:3OZJ PDBsum:3PCU PDBsum:3R5M PDB:1XLS
PDBsum:1XLS PDB:3R29 PDB:3R2A PDBsum:3R29 PDBsum:3R2A PDB:2ACL
PDB:3FAL PDB:3FC6 PDBsum:2ACL PDBsum:3FAL PDBsum:3FC6
DrugBank:DB00523 DrugBank:DB00926 PDB:1DSZ PDBsum:1DSZ
DrugBank:DB00210 OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 EMBL:X52773 EMBL:AB307705 EMBL:AC156789 EMBL:AL354796
EMBL:AL669970 EMBL:AL683798 EMBL:BC110998 EMBL:DQ303444
IPI:IPI00418394 PIR:S09592 RefSeq:NP_002948.1 UniGene:Hs.590886
PDB:1BY4 PDB:1FBY PDB:1G1U PDB:1G5Y PDB:1LBD PDB:1RXR PDB:1YNW
PDB:2NLL PDB:3NSP PDB:3NSQ PDB:3UVV PDBsum:1BY4 PDBsum:1FBY
PDBsum:1G1U PDBsum:1G5Y PDBsum:1LBD PDBsum:1RXR PDBsum:1YNW
PDBsum:2NLL PDBsum:3NSP PDBsum:3NSQ PDBsum:3UVV DisProt:DP00062
ProteinModelPortal:P19793 SMR:P19793 DIP:DIP-641N IntAct:P19793
MINT:MINT-98407 STRING:P19793 PhosphoSite:P19793 DMDM:133701
PaxDb:P19793 PRIDE:P19793 DNASU:6256 Ensembl:ENST00000481739
GeneID:6256 KEGG:hsa:6256 UCSC:uc004cfb.2 CTD:6256
GeneCards:GC09P137208 HGNC:HGNC:10477 HPA:CAB004565 HPA:CAB005352
MIM:180245 neXtProt:NX_P19793 PharmGKB:PA34890 InParanoid:P19793
KO:K08524 OMA:KHFLPLD BindingDB:P19793 ChEMBL:CHEMBL2061
EvolutionaryTrace:P19793 GenomeRNAi:6256 NextBio:24295
PMAP-CutDB:P19793 ArrayExpress:P19793 Bgee:P19793 CleanEx:HS_RXRA
Genevestigator:P19793 GermOnline:ENSG00000186350 Uniprot:P19793
Length = 462
Score = 201 (75.8 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 279 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 338
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 339 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 398
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 399 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 441
>MGI|MGI:98214 [details] [associations]
symbol:Rxra "retinoid X receptor alpha" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IGI] [GO:0001890 "placenta development"
evidence=IMP] [GO:0001893 "maternal placenta development"
evidence=IGI] [GO:0003007 "heart morphogenesis" evidence=TAS]
[GO:0003677 "DNA binding" evidence=ISO;IDA;IPI] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IGI] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO;IDA] [GO:0004886 "9-cis retinoic acid receptor
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IGI] [GO:0007507 "heart development" evidence=IMP;TAS]
[GO:0007566 "embryo implantation" evidence=IGI] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0010629 "negative regulation of
gene expression" evidence=TAS] [GO:0019048 "virus-host interaction"
evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0019904 "protein domain specific binding" evidence=ISO]
[GO:0030424 "axon" evidence=ISO] [GO:0031490 "chromatin DNA
binding" evidence=IDA] [GO:0031641 "regulation of myelination"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0032526 "response to retinoic acid" evidence=ISO] [GO:0035357
"peroxisome proliferator activated receptor signaling pathway"
evidence=ISO] [GO:0042809 "vitamin D receptor binding"
evidence=ISO] [GO:0042974 "retinoic acid receptor binding"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic
process" evidence=ISO] [GO:0043401 "steroid hormone mediated
signaling pathway" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IGI] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IDA] [GO:0044323 "retinoic acid-responsive
element binding" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;TAS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IGI;ISO;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0048384 "retinoic acid receptor signaling
pathway" evidence=ISO;IDA] [GO:0051384 "response to glucocorticoid
stimulus" evidence=ISO] [GO:0055007 "cardiac muscle cell
differentiation" evidence=TAS] [GO:0055010 "ventricular cardiac
muscle tissue morphogenesis" evidence=IMP] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IGI;IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IGI;IMP;TAS]
[GO:0060485 "mesenchyme development" evidence=TAS] [GO:0060528
"secretory columnal luminar epithelial cell differentiation
involved in prostate glandular acinus development" evidence=IMP]
[GO:0060687 "regulation of branching involved in prostate gland
morphogenesis" evidence=IMP] [GO:0060978 "angiogenesis involved in
coronary vascular morphogenesis" evidence=TAS] [GO:0061032
"visceral serous pericardium development" evidence=TAS]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:98214 GO:GO:0019048 GO:GO:0008285
GO:GO:0005654 GO:GO:0032869 GO:GO:0045471 GO:GO:0046872
GO:GO:0007568 GO:GO:0030424 eggNOG:NOG327099 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0001701 GO:GO:0006954 GO:GO:0045944
GO:GO:0051384 GO:GO:0001889 GO:GO:0007494 GO:GO:0000122
GO:GO:0043065 Reactome:REACT_127416 GO:GO:0000790 GO:GO:0032526
GO:GO:0060978 GO:GO:0003690 GO:GO:0010629 GO:GO:0001893
GO:GO:0033189 GO:GO:0010269 GO:GO:0031490 GO:GO:0033280
GO:GO:0007566 GO:GO:0031103 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 Reactome:REACT_27166 HOVERGEN:HBG005606 GO:GO:0061032
GO:GO:0060528 GO:GO:0060485 GeneTree:ENSGT00690000101777
GO:GO:0035357 PDB:1XDK PDBsum:1XDK GO:GO:0055012 GO:GO:0044323
PDB:3A9E PDBsum:3A9E PDB:1DKF PDBsum:1DKF HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
CTD:6256 KO:K08524 OMA:KHFLPLD EMBL:M84817 EMBL:X66223
IPI:IPI00467109 PIR:S26668 RefSeq:NP_035435.1 UniGene:Mm.24624
ProteinModelPortal:P28700 SMR:P28700 IntAct:P28700
MINT:MINT-2775018 STRING:P28700 PhosphoSite:P28700 PRIDE:P28700
Ensembl:ENSMUST00000077257 Ensembl:ENSMUST00000166775 GeneID:20181
KEGG:mmu:20181 InParanoid:P28700 BindingDB:P28700 ChEMBL:CHEMBL3084
ChiTaRS:RXRA EvolutionaryTrace:P28700 NextBio:297705 Bgee:P28700
CleanEx:MM_RXRA Genevestigator:P28700 GermOnline:ENSMUSG00000015846
GO:GO:0070644 Uniprot:P28700
Length = 467
Score = 201 (75.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 343
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 446
>RGD|3610 [details] [associations]
symbol:Rxra "retinoid X receptor alpha" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000790 "nuclear
chromatin" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0001889 "liver development"
evidence=IEP] [GO:0001890 "placenta development" evidence=IEP;ISO]
[GO:0001893 "maternal placenta development" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA;TAS] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISO;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=IEP]
[GO:0007494 "midgut development" evidence=IEP] [GO:0007507 "heart
development" evidence=ISO] [GO:0007565 "female pregnancy"
evidence=IEP] [GO:0007566 "embryo implantation" evidence=IEA;ISO]
[GO:0007568 "aging" evidence=IEP] [GO:0007584 "response to nutrient"
evidence=IEP] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation" evidence=IMP]
[GO:0010269 "response to selenium ion" evidence=IEP] [GO:0014070
"response to organic cyclic compound" evidence=IEP] [GO:0019048
"virus-host interaction" evidence=IEA;ISO] [GO:0019899 "enzyme
binding" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0030424 "axon" evidence=IDA] [GO:0031103
"axon regeneration" evidence=IEP] [GO:0031490 "chromatin DNA binding"
evidence=IEA;ISO] [GO:0031641 "regulation of myelination"
evidence=IDA] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0032526 "response to retinoic acid" evidence=IEP;ISO] [GO:0032869
"cellular response to insulin stimulus" evidence=IEP] [GO:0033189
"response to vitamin A" evidence=IEP] [GO:0033280 "response to
vitamin D" evidence=IEP] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA;ISO] [GO:0042809
"vitamin D receptor binding" evidence=IEA;ISO] [GO:0042974 "retinoic
acid receptor binding" evidence=IPI] [GO:0043065 "positive regulation
of apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA;ISO] [GO:0044323 "retinoic acid-responsive
element binding" evidence=IEA;ISO] [GO:0045471 "response to ethanol"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO]
[GO:0048384 "retinoic acid receptor signaling pathway" evidence=ISO]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEP;IMP]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IEA;ISO] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA;ISO] [GO:0060038 "cardiac muscle cell
proliferation" evidence=IEA;ISO] [GO:0060528 "secretory columnal
luminar epithelial cell differentiation involved in prostate
glandular acinus development" evidence=IEA;ISO] [GO:0060687
"regulation of branching involved in prostate gland morphogenesis"
evidence=IEA;ISO] [GO:0070644 "vitamin D response element binding"
evidence=IEA;ISO] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3610 GO:GO:0005634 GO:GO:0019048
GO:GO:0008285 GO:GO:0006355 GO:GO:0032869 GO:GO:0045471 GO:GO:0046872
GO:GO:0007568 GO:GO:0030424 eggNOG:NOG327099 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0006954 GO:GO:0045944 GO:GO:0051384
GO:GO:0007565 GO:GO:0001889 GO:GO:0007494 GO:GO:0000122 GO:GO:0043065
GO:GO:0000790 GO:GO:0032526 GO:GO:0001890 GO:GO:0033189 GO:GO:0010269
GO:GO:0031490 GO:GO:0033280 GO:GO:0031103 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 GO:GO:0031641 HOVERGEN:HBG005606 GO:GO:0060528
GO:GO:0035357 GO:GO:0055012 GO:GO:0044323 HOGENOM:HOG000260821
OrthoDB:EOG4SJ5DV GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
GO:GO:0070644 EMBL:L06482 IPI:IPI00188860 PIR:A47278 PIR:I67427
UniGene:Rn.108206 ProteinModelPortal:Q05343 SMR:Q05343 STRING:Q05343
PhosphoSite:Q05343 UCSC:RGD:3610 InParanoid:Q05343 BindingDB:Q05343
ChEMBL:CHEMBL4431 ArrayExpress:Q05343 Genevestigator:Q05343
GermOnline:ENSRNOG00000009446 Uniprot:Q05343
Length = 467
Score = 201 (75.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 343
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 446
>UNIPROTKB|Q0VJ96 [details] [associations]
symbol:Rxra "Retinoic acid receptor RXR-alpha"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3610 GO:GO:0019048 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0000790 GO:GO:0031490 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 HOVERGEN:HBG005606 EMBL:CH474001 GO:GO:0060528
GeneTree:ENSGT00690000101777 GO:GO:0035357 GO:GO:0055012
GO:GO:0044323 GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825
CTD:6256 KO:K08524 GO:GO:0070644 UniGene:Rn.108206 EMBL:AM295012
EMBL:AM295013 EMBL:AM392401 IPI:IPI00851118 RefSeq:NP_036937.2
SMR:Q0VJ96 STRING:Q0VJ96 Ensembl:ENSRNOT00000012892 GeneID:25271
KEGG:rno:25271 InParanoid:Q0VJ96 NextBio:605957
Genevestigator:Q0VJ96 Uniprot:Q0VJ96
Length = 467
Score = 201 (75.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 343
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 344 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 403
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 404 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 446
>UNIPROTKB|F1MX52 [details] [associations]
symbol:RXRA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070644 "vitamin D response element binding"
evidence=IEA] [GO:0060687 "regulation of branching involved in
prostate gland morphogenesis" evidence=IEA] [GO:0060528 "secretory
columnal luminar epithelial cell differentiation involved in
prostate glandular acinus development" evidence=IEA] [GO:0060038
"cardiac muscle cell proliferation" evidence=IEA] [GO:0055012
"ventricular cardiac muscle cell differentiation" evidence=IEA]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044323
"retinoic acid-responsive element binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0042809 "vitamin D receptor binding" evidence=IEA] [GO:0035357
"peroxisome proliferator activated receptor signaling pathway"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0001893 "maternal placenta development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0019048 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0000790 GO:GO:0031490 GO:GO:0060038 GO:GO:0055010
GO:GO:0060687 GO:GO:0060528 GeneTree:ENSGT00690000101777
GO:GO:0035357 GO:GO:0055012 GO:GO:0044323 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OMA:KHFLPLD GO:GO:0070644
EMBL:DAAA02032421 EMBL:DAAA02032422 EMBL:DAAA02032423
IPI:IPI00722888 Ensembl:ENSBTAT00000023729 Uniprot:F1MX52
Length = 474
Score = 201 (75.8 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 291 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 350
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 351 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 410
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 411 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 453
>UNIPROTKB|F1P6M9 [details] [associations]
symbol:RXRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 GeneTree:ENSGT00690000101777 InterPro:IPR021780
Pfam:PF11825 OMA:KHFLPLD EMBL:AAEX03006790
Ensembl:ENSCAFT00000031555 Uniprot:F1P6M9
Length = 486
Score = 201 (75.8 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 58/191 (30%), Positives = 96/191 (50%)
Query: 107 LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
LNPNS P + Q ++ + +VE+AKRIP FS L DDQV LL+AG E+L+
Sbjct: 280 LNPNS-PNDPVTNICQAADKQ----LFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLI 334
Query: 167 VRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMF-DFAERLNGLHLSDTEIGLF 225
+ + + ++ G + R+S HS+ + D + + ++ + + +E+G
Sbjct: 335 ASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCL 394
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+IV+ +P GL N VE +R K+ L +PEQ A+L+ LP LR++
Sbjct: 395 RAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGL 454
Query: 286 LHSEKLVAFQM 296
E L F++
Sbjct: 455 KCLEHLFFFKL 465
>UNIPROTKB|E9PK95 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AL645940 EMBL:AL662824 EMBL:AL844527
EMBL:CR759733 EMBL:CR936877 EMBL:CR354565 HGNC:HGNC:10478
ChiTaRS:RXRB IPI:IPI00984407 SMR:E9PK95 Ensembl:ENST00000531100
Ensembl:ENST00000544186 Ensembl:ENST00000546880
Ensembl:ENST00000549889 Ensembl:ENST00000552670
Ensembl:ENST00000553072 UCSC:uc011dqr.2 Uniprot:E9PK95
Length = 347
Score = 197 (74.4 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 52/167 (31%), Positives = 85/167 (50%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 160 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 219
Query: 195 SSNARFLMDS-----MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG 249
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R
Sbjct: 220 SAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLRE 279
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
K+ L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 280 KVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 326
>UNIPROTKB|E9PLL4 [details] [associations]
symbol:NR1H3 "Oxysterols receptor LXR-alpha" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351 EMBL:AC018410
InterPro:IPR023257 PRINTS:PR02034 HGNC:HGNC:7966 IPI:IPI00976161
ProteinModelPortal:E9PLL4 SMR:E9PLL4 Ensembl:ENST00000481889
ArrayExpress:E9PLL4 Bgee:E9PLL4 Uniprot:E9PLL4
Length = 466
Score = 130 (50.8 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 32/141 (22%), Positives = 71/141 (50%)
Query: 159 AGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF-LMDSMFDFAERLNGLHL 217
A +V+L+ + ++ + S+ L R+ + + ++ +F+F+ +N L L
Sbjct: 311 AACVQVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQL 370
Query: 218 SDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISML 277
+D E L +I + S R ++++ VER++ L ++ +HP + ++ L
Sbjct: 371 NDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKL 430
Query: 278 PDLRTLNQLHSEKLVAFQMTE 298
LRTL+ +HSE++ A ++ +
Sbjct: 431 VSLRTLSSVHSEQVFALRLQD 451
Score = 119 (46.9 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEV 164
P+ P+ H + +Q+ F+E +++++V+FAK++PGF L +DQ+ LLK EV
Sbjct: 194 PMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEV 252
>UNIPROTKB|P10827 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9606
"Homo sapiens" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001503
"ossification" evidence=IEA] [GO:0002153 "steroid receptor RNA
activator RNA binding" evidence=IEA] [GO:0002155 "regulation of
thyroid hormone mediated signaling pathway" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IEA] [GO:0008016
"regulation of heart contraction" evidence=IEA] [GO:0008050 "female
courtship behavior" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0010831 "positive regulation of myotube
differentiation" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0030878 "thyroid gland
development" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0033032 "regulation of myeloid cell apoptotic process"
evidence=IEA] [GO:0042994 "cytoplasmic sequestering of
transcription factor" evidence=IEA] [GO:0045925 "positive
regulation of female receptivity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0050994 "regulation of lipid catabolic
process" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:2000143 "negative regulation of DNA-dependent transcription,
initiation" evidence=IDA] [GO:0070324 "thyroid hormone binding"
evidence=IDA;IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0004887 "thyroid hormone receptor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0017025 "TBP-class protein binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0009755 "hormone-mediated signaling pathway" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] Reactome:REACT_71
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005829 GO:GO:0005654 GO:GO:0046872
EMBL:CH471152 GO:GO:0009409 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0008016 Pathway_Interaction_DB:rxr_vdr_pathway
GO:GO:0007611 GO:GO:0044212 GO:GO:0030218 GO:GO:0009755
GO:GO:0070324 DrugBank:DB00451 DrugBank:DB00279 GO:GO:0001502
GO:GO:0006367 GO:GO:0001503 GO:GO:0031490 GO:GO:2000143
GO:GO:0050994 GO:GO:0004887 GO:GO:0042994 GO:GO:0017025
GO:GO:0010831 HOVERGEN:HBG005606 GO:GO:0030878 GO:GO:0002155
GO:GO:0017055 GO:GO:0045925 EMBL:M24900 EMBL:X55066 UniGene:Hs.724
GO:GO:0008050 GO:GO:0033032 CTD:7067 KO:K05547 EMBL:X55074
EMBL:X55073 EMBL:X55070 EMBL:X55071 EMBL:X55004 EMBL:X55069
EMBL:X55068 EMBL:X55005 EMBL:M24899 EMBL:J03239 EMBL:Y00479
EMBL:M24748 EMBL:AK290530 EMBL:BC000261 EMBL:BC002728 EMBL:BC035137
EMBL:AF522368 IPI:IPI00022991 IPI:IPI00219099 IPI:IPI00219100
IPI:IPI00219101 PIR:A30893 PIR:A40917 PIR:S06163
RefSeq:NP_001177847.1 RefSeq:NP_001177848.1 RefSeq:NP_003241.2
RefSeq:NP_955366.1 PDB:1NAV PDB:2H77 PDB:2H79 PDB:3HZF PDB:3ILZ
PDB:3JZB PDBsum:1NAV PDBsum:2H77 PDBsum:2H79 PDBsum:3HZF
PDBsum:3ILZ PDBsum:3JZB ProteinModelPortal:P10827 SMR:P10827
IntAct:P10827 STRING:P10827 PhosphoSite:P10827 DMDM:135705
PaxDb:P10827 PRIDE:P10827 DNASU:7067 Ensembl:ENST00000264637
Ensembl:ENST00000394121 Ensembl:ENST00000450525
Ensembl:ENST00000546243 Ensembl:ENST00000584985 GeneID:7067
KEGG:hsa:7067 UCSC:uc002htw.3 UCSC:uc002htx.3 GeneCards:GC17P038219
HGNC:HGNC:11796 HPA:CAB023349 HPA:HPA009654 MIM:190120 MIM:614450
neXtProt:NX_P10827 Orphanet:97927 PharmGKB:PA36507 eggNOG:NOG272726
HOGENOM:HOG000010313 InParanoid:P10827 OMA:DEEPEVC
OrthoDB:EOG4B2SX0 PhylomeDB:P10827 BindingDB:P10827
ChEMBL:CHEMBL1860 ChiTaRS:THRA EvolutionaryTrace:P10827
GenomeRNAi:7067 NextBio:27631 ArrayExpress:P10827 Bgee:P10827
CleanEx:HS_THRA Genevestigator:P10827 GermOnline:ENSG00000126351
GO:GO:0002153 Uniprot:P10827
Length = 490
Score = 200 (75.5 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>MGI|MGI:98742 [details] [associations]
symbol:Thra "thyroid hormone receptor alpha" species:10090
"Mus musculus" [GO:0001071 "nucleic acid binding transcription
factor activity" evidence=ISO] [GO:0001502 "cartilage condensation"
evidence=IMP] [GO:0001503 "ossification" evidence=IMP] [GO:0002153
"steroid receptor RNA activator RNA binding" evidence=IDA]
[GO:0002155 "regulation of thyroid hormone mediated signaling
pathway" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;IDA] [GO:0004879 "ligand-activated sequence-specific
DNA binding RNA polymerase II transcription factor activity"
evidence=IDA] [GO:0004887 "thyroid hormone receptor activity"
evidence=ISO;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0007611 "learning or memory" evidence=IMP]
[GO:0008016 "regulation of heart contraction" evidence=IMP]
[GO:0008050 "female courtship behavior" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold" evidence=IMP]
[GO:0009755 "hormone-mediated signaling pathway" evidence=ISO]
[GO:0009887 "organ morphogenesis" evidence=IMP] [GO:0010831
"positive regulation of myotube differentiation" evidence=IDA]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=ISO] [GO:0019904 "protein
domain specific binding" evidence=ISO] [GO:0030218 "erythrocyte
differentiation" evidence=IMP] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO;IDA;TAS] [GO:0030878
"thyroid gland development" evidence=IGI] [GO:0031490 "chromatin
DNA binding" evidence=IDA] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0033032 "regulation of myeloid cell apoptotic
process" evidence=IMP] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0042994 "cytoplasmic sequestering of
transcription factor" evidence=IDA] [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0043433 "negative
regulation of sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=ISO] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0044213 "intronic transcription
regulatory region DNA binding" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0045925 "positive regulation of female receptivity"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=ISO] [GO:0050994 "regulation of
lipid catabolic process" evidence=IMP] [GO:0070324 "thyroid hormone
binding" evidence=ISO] [GO:2000143 "negative regulation of
DNA-dependent transcription, initiation" evidence=ISO]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 MGI:MGI:98742 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0032403 GO:GO:0046872
GO:GO:0009409 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GO:GO:0008016 GO:GO:0007611 EMBL:CH466556 GO:GO:0044212
GO:GO:0030218 GO:GO:0070324 GO:GO:0001502 GO:GO:0001503
GO:GO:0031490 GO:GO:2000143 GO:GO:0050994 GO:GO:0004887
GO:GO:0042994 EMBL:AL590963 GO:GO:0010831 HOVERGEN:HBG005606
GO:GO:0030878 GO:GO:0002155 GO:GO:0017055 GO:GO:0045925
GO:GO:0008050 GO:GO:0033032 GeneTree:ENSGT00680000099662 CTD:7067
KO:K05547 eggNOG:NOG272726 OMA:DEEPEVC OrthoDB:EOG4B2SX0
GO:GO:0002153 EMBL:X07750 EMBL:X07751 EMBL:X07752 EMBL:X51983
EMBL:AK078233 EMBL:BC046795 IPI:IPI00134812 IPI:IPI00229975
IPI:IPI00229976 IPI:IPI00955166 PIR:S14416 PIR:S14417 PIR:S14418
PIR:S14690 RefSeq:NP_835161.1 UniGene:Mm.265917 UniGene:Mm.442648
ProteinModelPortal:P63058 SMR:P63058 DIP:DIP-43752N
MINT:MINT-3374329 STRING:P63058 PhosphoSite:P63058 PRIDE:P63058
Ensembl:ENSMUST00000064187 Ensembl:ENSMUST00000103139
Ensembl:ENSMUST00000124072 GeneID:21833 KEGG:mmu:21833
UCSC:uc007lhe.1 UCSC:uc007lhf.1 UCSC:uc007lhg.1 InParanoid:Q80Y90
NextBio:301282 Bgee:P63058 CleanEx:MM_THRA Genevestigator:P63058
GermOnline:ENSMUSG00000058756 Uniprot:P63058
Length = 492
Score = 200 (75.5 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>RGD|3857 [details] [associations]
symbol:Thra "thyroid hormone receptor alpha" species:10116 "Rattus
norvegicus" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=IDA] [GO:0001502 "cartilage condensation"
evidence=IEA;ISO] [GO:0001503 "ossification" evidence=IEA;ISO]
[GO:0001822 "kidney development" evidence=IEP] [GO:0001889 "liver
development" evidence=IEP] [GO:0002153 "steroid receptor RNA
activator RNA binding" evidence=IEA;ISO] [GO:0002155 "regulation of
thyroid hormone mediated signaling pathway" evidence=IEA;ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;IDA] [GO:0004879 "ligand-activated sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=ISO] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005829 "cytosol" evidence=IEA;ISO;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006950 "response to stress"
evidence=IEP] [GO:0007420 "brain development" evidence=IEP]
[GO:0007611 "learning or memory" evidence=IEA;ISO] [GO:0008016
"regulation of heart contraction" evidence=IEA;ISO] [GO:0008050
"female courtship behavior" evidence=IEA;ISO] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA;ISO] [GO:0009755 "hormone-mediated signaling pathway"
evidence=ISO] [GO:0009887 "organ morphogenesis" evidence=ISO]
[GO:0010831 "positive regulation of myotube differentiation"
evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
evidence=IEA;ISO] [GO:0017055 "negative regulation of RNA polymerase
II transcriptional preinitiation complex assembly" evidence=IEA;ISO]
[GO:0019904 "protein domain specific binding" evidence=IEA;ISO]
[GO:0030218 "erythrocyte differentiation" evidence=IEA;ISO]
[GO:0030324 "lung development" evidence=IEP] [GO:0030325 "adrenal
gland development" evidence=IEP] [GO:0030522 "intracellular receptor
mediated signaling pathway" evidence=ISO] [GO:0030878 "thyroid gland
development" evidence=IEA;ISO] [GO:0031490 "chromatin DNA binding"
evidence=IEA;ISO] [GO:0031667 "response to nutrient levels"
evidence=IEP] [GO:0032403 "protein complex binding" evidence=IEA;ISO]
[GO:0033032 "regulation of myeloid cell apoptotic process"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0042994 "cytoplasmic sequestering of transcription factor"
evidence=IEA;ISO] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA;IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA;ISO] [GO:0044213 "intronic transcription
regulatory region DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO] [GO:0045925
"positive regulation of female receptivity" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IEA;ISO;IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IDA] [GO:0046983 "protein
dimerization activity" evidence=IDA] [GO:0048565 "digestive tract
development" evidence=IEP] [GO:0048568 "embryonic organ development"
evidence=IEP] [GO:0050994 "regulation of lipid catabolic process"
evidence=IEA;ISO] [GO:0070324 "thyroid hormone binding"
evidence=IEA;ISO] [GO:2000143 "negative regulation of DNA-dependent
transcription, initiation" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 MGI:MGI:98742 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0032403 GO:GO:0046872 GO:GO:0009409
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0008016
GO:GO:0007611 EMBL:CH466556 GO:GO:0044212 GO:GO:0030218 GO:GO:0070324
GO:GO:0001502 GO:GO:0001503 GO:GO:0031490 GO:GO:2000143 GO:GO:0050994
GO:GO:0004887 GO:GO:0042994 EMBL:AL590963 GO:GO:0010831
HOVERGEN:HBG005606 GO:GO:0030878 GO:GO:0002155 GO:GO:0017055
GO:GO:0045925 GO:GO:0008050 GO:GO:0033032
GeneTree:ENSGT00680000099662 CTD:7067 KO:K05547 eggNOG:NOG272726
OMA:DEEPEVC OrthoDB:EOG4B2SX0 GO:GO:0002153 EMBL:X07750 EMBL:X07751
EMBL:X07752 EMBL:X51983 EMBL:AK078233 EMBL:BC046795 IPI:IPI00134812
IPI:IPI00229975 IPI:IPI00229976 IPI:IPI00955166 PIR:S14416 PIR:S14417
PIR:S14418 PIR:S14690 RefSeq:NP_835161.1 UniGene:Mm.265917
UniGene:Mm.442648 ProteinModelPortal:P63058 SMR:P63058 DIP:DIP-43752N
MINT:MINT-3374329 STRING:P63058 PhosphoSite:P63058 PRIDE:P63058
Ensembl:ENSMUST00000064187 Ensembl:ENSMUST00000103139
Ensembl:ENSMUST00000124072 GeneID:21833 KEGG:mmu:21833
UCSC:uc007lhe.1 UCSC:uc007lhf.1 UCSC:uc007lhg.1 InParanoid:Q80Y90
NextBio:301282 Bgee:P63058 CleanEx:MM_THRA Genevestigator:P63058
GermOnline:ENSMUSG00000058756 Uniprot:P63058
Length = 492
Score = 200 (75.5 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>UNIPROTKB|P63059 [details] [associations]
symbol:Thra "Thyroid hormone receptor alpha" species:10116
"Rattus norvegicus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3857 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0009409 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0008016 GO:GO:0007611 GO:GO:0044212
GO:GO:0030218 GO:GO:0070324 GO:GO:0001502 GO:GO:0001503
GO:GO:0031490 GO:GO:2000143 GO:GO:0050994 GO:GO:0004887
GO:GO:0042994 GO:GO:0010831 HOVERGEN:HBG005606 GO:GO:0030878
GO:GO:0002155 GO:GO:0017055 GO:GO:0045925 GO:GO:0008050
GO:GO:0033032 CTD:7067 KO:K05547 eggNOG:NOG272726 OrthoDB:EOG4B2SX0
GO:GO:0002153 EMBL:M31174 EMBL:M31177 EMBL:M18028 EMBL:X12744
IPI:IPI00231074 IPI:IPI00324673 PIR:A36752 PIR:I57696 PIR:I67429
PIR:S06410 PIR:S06907 PIR:S09178 RefSeq:NP_001017960.1
RefSeq:NP_112396.2 UniGene:Rn.11307 ProteinModelPortal:P63059
SMR:P63059 STRING:P63059 PhosphoSite:P63059 GeneID:81812
KEGG:rno:81812 InParanoid:P63059 BindingDB:P63059 ChEMBL:CHEMBL4823
NextBio:615701 Genevestigator:P63059 GermOnline:ENSRNOG00000009066
Uniprot:P63059
Length = 492
Score = 200 (75.5 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>ZFIN|ZDB-GENE-070314-2 [details] [associations]
symbol:rxraa "retinoid X receptor, alpha a"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0043401
"steroid hormone mediated signaling pathway" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 ZFIN:ZDB-GENE-070314-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 GeneTree:ENSGT00690000101777
InterPro:IPR021780 Pfam:PF11825 EMBL:CU062650 EMBL:BX001031
IPI:IPI00994409 ProteinModelPortal:F1R1Y8
Ensembl:ENSDART00000124173 ArrayExpress:F1R1Y8 Bgee:F1R1Y8
Uniprot:F1R1Y8
Length = 495
Score = 200 (75.5 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 52/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 312 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 371
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 372 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA 431
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +PEQ A+L+ LP LR++ E L F++
Sbjct: 432 SLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 474
>UNIPROTKB|O97716 [details] [associations]
symbol:THRA "Thyroid hormone receptor alpha" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG005606
CTD:7067 KO:K05547 eggNOG:NOG272726 HOGENOM:HOG000010313
OrthoDB:EOG4B2SX0 EMBL:AJ005798 EMBL:AJ005797 RefSeq:NP_999355.1
UniGene:Ssc.31357 ProteinModelPortal:O97716 SMR:O97716
STRING:O97716 GeneID:397387 KEGG:ssc:397387 Uniprot:O97716
Length = 506
Score = 200 (75.5 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>UNIPROTKB|Q1RMT4 [details] [associations]
symbol:THRA "Thyroid hormone receptor, alpha
(Erythroblastic leukemia viral (V-erb-a) oncogene homolog, avian)"
species:9913 "Bos taurus" [GO:2000143 "negative regulation of
DNA-dependent transcription, initiation" evidence=IEA] [GO:0070324
"thyroid hormone binding" evidence=IEA] [GO:0050994 "regulation of
lipid catabolic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045925 "positive regulation of female
receptivity" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0042994 "cytoplasmic
sequestering of transcription factor" evidence=IEA] [GO:0033032
"regulation of myeloid cell apoptotic process" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0031490
"chromatin DNA binding" evidence=IEA] [GO:0030878 "thyroid gland
development" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0017055 "negative regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0010831 "positive regulation of myotube differentiation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0008050 "female courtship behavior" evidence=IEA] [GO:0008016
"regulation of heart contraction" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0002155
"regulation of thyroid hormone mediated signaling pathway"
evidence=IEA] [GO:0002153 "steroid receptor RNA activator RNA
binding" evidence=IEA] [GO:0001503 "ossification" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0009409 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0045944 GO:GO:0008016 GO:GO:0007611 GO:GO:0044212
GO:GO:0030218 GO:GO:0070324 GO:GO:0001502 GO:GO:0001503
GO:GO:0031490 GO:GO:2000143 GO:GO:0050994 GO:GO:0004887
GO:GO:0042994 GO:GO:0010831 HOVERGEN:HBG005606 GO:GO:0030878
GO:GO:0002155 GO:GO:0017055 GO:GO:0045925 GO:GO:0008050
GO:GO:0033032 GeneTree:ENSGT00680000099662 CTD:7067 KO:K05547
eggNOG:NOG272726 HOGENOM:HOG000010313 OMA:DEEPEVC OrthoDB:EOG4B2SX0
GO:GO:0002153 EMBL:DAAA02049128 EMBL:BC114725 IPI:IPI00687166
RefSeq:NP_001039794.1 UniGene:Bt.21583 SMR:Q1RMT4 STRING:Q1RMT4
Ensembl:ENSBTAT00000014236 GeneID:532621 KEGG:bta:532621
InParanoid:Q1RMT4 NextBio:20875751 Uniprot:Q1RMT4
Length = 511
Score = 200 (75.5 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>UNIPROTKB|E2QZW9 [details] [associations]
symbol:THRA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099662 OMA:DEEPEVC EMBL:AAEX03006466
EMBL:AAEX03006467 UniGene:Cfa.3463 Ensembl:ENSCAFT00000025690
NextBio:20817106 Uniprot:E2QZW9
Length = 511
Score = 200 (75.5 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 43/143 (30%), Positives = 84/143 (58%)
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
E +F++ +P I VV+FAK++P FS L +DQ+ LLK E++ +R A +D +++
Sbjct: 213 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 272
Query: 179 SMICLNGEVLV-RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
++ L+GE+ V R+ + + + D++F+ + L+ +L DTE+ L +++++S RSG
Sbjct: 273 TLT-LSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSG 331
Query: 238 LRNKELVERMRGKLENMLMHVLN 260
L + +E+ + H +N
Sbjct: 332 LLCVDKIEKSQEAYLLAFEHYVN 354
>UNIPROTKB|F1NH64 [details] [associations]
symbol:RXRA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001893 "maternal placenta
development" evidence=IEA] [GO:0004886 "9-cis retinoic acid
receptor activity" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0031490 "chromatin
DNA binding" evidence=IEA] [GO:0035357 "peroxisome proliferator
activated receptor signaling pathway" evidence=IEA] [GO:0042809
"vitamin D receptor binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0044323 "retinoic
acid-responsive element binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0055012 "ventricular
cardiac muscle cell differentiation" evidence=IEA] [GO:0060038
"cardiac muscle cell proliferation" evidence=IEA] [GO:0060528
"secretory columnal luminar epithelial cell differentiation
involved in prostate glandular acinus development" evidence=IEA]
[GO:0060687 "regulation of branching involved in prostate gland
morphogenesis" evidence=IEA] [GO:0070644 "vitamin D response
element binding" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944 GO:GO:0000122
GO:GO:0000790 GO:GO:0031490 GO:GO:0060687
GeneTree:ENSGT00690000101777 GO:GO:0035357 GO:GO:0044323
GO:GO:0004886 InterPro:IPR021780 Pfam:PF11825 OMA:KHFLPLD
GO:GO:0070644 EMBL:AADN02026433 EMBL:AADN02026434 EMBL:AADN02026435
IPI:IPI00584474 Ensembl:ENSGALT00000004139 Uniprot:F1NH64
Length = 448
Score = 198 (74.8 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R+S H
Sbjct: 265 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 324
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 325 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA 384
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L +P+Q A+L+ LP LR++ E L F++
Sbjct: 385 SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 427
>UNIPROTKB|A5D9P5 [details] [associations]
symbol:RXRB "Retinoid X receptor, beta" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR000003
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 HOVERGEN:HBG005606 GeneTree:ENSGT00690000101777
InterPro:IPR021780 Pfam:PF11825 EMBL:CT737383 EMBL:BX640585
ProteinModelPortal:A5D9P5 SMR:A5D9P5 STRING:A5D9P5
Ensembl:ENSSSCT00000036293 Uniprot:A5D9P5
Length = 414
Score = 197 (74.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 52/167 (31%), Positives = 85/167 (50%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 227 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 286
Query: 195 SSNARFLMDS-----MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG 249
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R
Sbjct: 287 SAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLRE 346
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
K+ L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 347 KVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 393
>ZFIN|ZDB-GENE-030903-3 [details] [associations]
symbol:nr1i2 "nuclear receptor subfamily 1, group I,
member 2" species:7955 "Danio rerio" [GO:0043401 "steroid hormone
mediated signaling pathway" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0001071 "nucleic
acid binding transcription factor activity" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-030903-3 GO:GO:0005634 GO:GO:0046872
GO:GO:0004879 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GeneTree:ENSGT00680000099585 EMBL:CR848676 IPI:IPI00935074
Ensembl:ENSDART00000017326 Bgee:F1R424 Uniprot:F1R424
Length = 430
Score = 197 (74.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 65/303 (21%), Positives = 135/303 (44%)
Query: 1 MMEDELPILKSILKGNARYHNAPVRFGRVPKREKA--RILAAMQQSTNTKCTEKALAAEL 58
+M DE + + R PV P++E +L A +++ + C + L
Sbjct: 116 IMSDEAVEKRRLQIRRKRMQEEPVTL--TPQQEAVIQELLNAHKKTFDMTCAHFSQFRPL 173
Query: 59 DDEQRMLSTVVR----AHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPL 114
D Q+ +S + + +D D ++ + + ++C S H
Sbjct: 174 DRGQKSVSESIPVTNGSWIDHRPIAEDPVQWVFNSTSLSSSSSSCQSLD----KEKKHFK 229
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
G L F++ + I++V+ F K + F L +DQ++LLK FE++L+ F+
Sbjct: 230 SGSFTSLPHFTDLTTYMIKNVINFGKTLTMFRALVMEDQISLLKGATFEIILIHFNMFFN 289
Query: 175 SQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
T C + + D+ + L+D M +F L L L + E L ++ + SP
Sbjct: 290 EVTGIWECGPLQYCMDDAFRAGFQHHLLDPMMNFHYTLRKLRLHEEEYVLMQALSLFSPD 349
Query: 235 RSGLRNKELVERMRGKLENMLMHVLN--QNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
R G+ + ++++R + L L + +N PE+ L +++ L ++R++N+ ++++++
Sbjct: 350 RPGVTDHKVIDRNQETLALTLKTYIEAKRNGPEKNLLFPKIMGCLTEMRSMNEEYTKQVL 409
Query: 293 AFQ 295
Q
Sbjct: 410 KIQ 412
>UNIPROTKB|F1NSP3 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004886 "9-cis retinoic
acid receptor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
GeneTree:ENSGT00690000101777 GO:GO:0004886 InterPro:IPR021780
Pfam:PF11825 IPI:IPI00600229 EMBL:AADN02034021 EMBL:AADN02034022
EMBL:AADN02034023 Ensembl:ENSGALT00000005387 OMA:FIKFPAG
Uniprot:F1NSP3
Length = 467
Score = 197 (74.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 284 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 343
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL + VE +R K+
Sbjct: 344 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 403
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 404 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 446
>UNIPROTKB|P28701 [details] [associations]
symbol:RXRG "Retinoic acid receptor RXR-gamma" species:9031
"Gallus gallus" [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004886 "9-cis retinoic
acid receptor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
eggNOG:NOG327099 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0045944
HOVERGEN:HBG005606 HOGENOM:HOG000260821 GO:GO:0004886
InterPro:IPR021780 Pfam:PF11825 OrthoDB:EOG42RD7K CTD:6258
KO:K08526 EMBL:X58997 EMBL:S72435 IPI:IPI00584417 IPI:IPI00600229
PIR:A43781 PIR:S46479 RefSeq:NP_990625.1 UniGene:Gga.717
ProteinModelPortal:P28701 SMR:P28701 STRING:P28701 GeneID:396231
KEGG:gga:396231 InParanoid:P28701 NextBio:20816283 Uniprot:P28701
Length = 467
Score = 197 (74.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 284 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 343
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + D + + ++ + + +E+G +IV+ +P GL + VE +R K+
Sbjct: 344 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYA 403
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 404 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 446
>RGD|621400 [details] [associations]
symbol:Nr1i3 "nuclear receptor subfamily 1, group I, member 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0005829 "cytosol"
evidence=IEA;ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA;ISO] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:621400 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0005856 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655
HOGENOM:HOG000220844 CTD:9970 eggNOG:NOG251788 KO:K08541
OMA:PRDRFLY OrthoDB:EOG4CVG7C EMBL:AF133095 EMBL:AF133094
EMBL:AB104736 EMBL:AB105071 IPI:IPI00210846 RefSeq:NP_075230.1
UniGene:Rn.163229 ProteinModelPortal:Q9QUS1 SMR:Q9QUS1
STRING:Q9QUS1 PhosphoSite:Q9QUS1 PRIDE:Q9QUS1
Ensembl:ENSRNOT00000049873 GeneID:65035 KEGG:rno:65035
UCSC:RGD:621400 InParanoid:Q9QUS1 NextBio:613836
ArrayExpress:Q9QUS1 Genevestigator:Q9QUS1
GermOnline:ENSRNOG00000003260 Uniprot:Q9QUS1
Length = 358
Score = 193 (73.0 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 48/185 (25%), Positives = 96/185 (51%)
Query: 113 PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM 172
PL LL F++ + ++ +++F K +P F L +DQ++LLK E+L + L
Sbjct: 160 PLAPVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTT 219
Query: 173 FDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
F QT + C + D++H ++ + F + L L L + E L +++ + S
Sbjct: 220 FCLQTQNFFCGPLCYKMEDAVHVGFQYEFLELIIHFHKTLKRLQLQEPEYALMAAMALFS 279
Query: 233 PSRSGLRNKELVERMRGKLENMLM-HVLNQNHPEQMN-LCAELISMLPDLRTLNQLHSEK 290
P R G+ +E +++++ ++ +L H++ Q Q L A+L+ +L +LR++N +S +
Sbjct: 280 PDRPGVTQREEIDQLQEEVALILNNHIMEQQSRLQSRFLYAKLMGLLAELRSINSAYSYE 339
Query: 291 LVAFQ 295
+ Q
Sbjct: 340 IHRIQ 344
>UNIPROTKB|F1PUF6 [details] [associations]
symbol:RXRB "Retinoic acid receptor RXR-beta" species:9615
"Canis lupus familiaris" [GO:0071300 "cellular response to retinoic
acid" evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004886
"9-cis retinoic acid receptor activity" evidence=IEA] [GO:0001893
"maternal placenta development" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0044212 GO:GO:0060038 GeneTree:ENSGT00690000101777
GO:GO:0055012 GO:GO:0004886 OMA:FLPERHA EMBL:AAEX03008237
Ensembl:ENSCAFT00000001418 NextBio:20856477 Uniprot:F1PUF6
Length = 536
Score = 197 (74.4 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 52/167 (31%), Positives = 85/167 (50%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 349 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 408
Query: 195 SSNARFLMDS-----MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG 249
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R
Sbjct: 409 SAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLRE 468
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
K+ L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 469 KVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 515
>UNIPROTKB|F1M9P1 [details] [associations]
symbol:Rxrb "Retinoic acid receptor RXR-beta" species:10116
"Rattus norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001893 "maternal placenta development"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] [GO:0004886 "9-cis retinoic acid receptor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0044212 "transcription regulatory region
DNA binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0055012 "ventricular cardiac muscle cell differentiation"
evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
evidence=IEA] [GO:0071300 "cellular response to retinoic acid"
evidence=IEA] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 RGD:3611 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0071300 GO:GO:0045944
GO:GO:0044212 GO:GO:0060038 GeneTree:ENSGT00690000101777
GO:GO:0055012 GO:GO:0004886 IPI:IPI00394256 OMA:FLPERHA
Ensembl:ENSRNOT00000041613 ArrayExpress:F1M9P1 Uniprot:F1M9P1
Length = 522
Score = 195 (73.7 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 52/167 (31%), Positives = 85/167 (50%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + ++ G + R+S H
Sbjct: 335 LVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAH 394
Query: 195 SSNARFLMDS-----MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRG 249
S+ + D + + ++ + + TE+G +I++ +P GL N VE +R
Sbjct: 395 SAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILRE 454
Query: 250 KLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
K+ L Q +PEQ A+L+ LP LR++ E L F++
Sbjct: 455 KVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKL 501
>UNIPROTKB|P62045 [details] [associations]
symbol:NR1I3 "Nuclear receptor subfamily 1 group I member
3" species:9719 "Pusa sibirica" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR001728
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0005737 GO:GO:0005856 GO:GO:0046872 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0004887 HOVERGEN:HBG108655 EMBL:AB109553
ProteinModelPortal:P62045 SMR:P62045 Uniprot:P62045
Length = 348
Score = 192 (72.6 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 46/178 (25%), Positives = 88/178 (49%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL+ F+E + ++ V++F K +P F L +DQ++LLK E+ + L F QT +
Sbjct: 157 LLEHFAEVNTFMVQQVIKFTKDLPLFRSLPMEDQISLLKGAAVEICHIALNTTFCLQTRN 216
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+C + D +H ++ +F F L L + E L +++ + SP R G+
Sbjct: 217 FLCGPLRYTLEDGVHVGFQEEFLELLFRFHATLRRFQLQEPEYVLMAAMALFSPDRPGVT 276
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
KE ++R++ + L + P + L A+L+ +L +LR++N + ++ Q
Sbjct: 277 QKEEIDRLQEMMALTLQSYIKGQPPRHRDRFLYAKLLGLLAELRSINNAYGYQIQHIQ 334
Score = 38 (18.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 77 AFTADKIEPMLRRAREHPTYTACPSTLACPLN 108
A T + + RR T CP +C +N
Sbjct: 25 ALTCEGCKGFFRRTVSKNTGLTCPFAGSCKVN 56
>UNIPROTKB|J9P062 [details] [associations]
symbol:NR1I2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004887 "thyroid hormone receptor activity"
evidence=IEA] [GO:0003707 "steroid hormone receptor activity"
evidence=IEA] InterPro:IPR000536 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 Pfam:PF00104 PRINTS:PR00398
PRINTS:PR00546 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0003707 Gene3D:1.10.565.10 SUPFAM:SSF48508
GO:GO:0004887 GeneTree:ENSGT00680000099585 EMBL:AAEX03017018
EMBL:AAEX03017017 Ensembl:ENSCAFT00000043797 Uniprot:J9P062
Length = 328
Score = 189 (71.6 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 49/178 (27%), Positives = 91/178 (51%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL ++ + + V+ FAK I F L +DQ++LLK FEV +R +F+++T +
Sbjct: 133 LLPHMADMSTYMFKGVINFAKVISHFRELPIEDQISLLKGATFEVCQLRFNTVFNAETGT 192
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
C + D + L++ + F RL L L E L +I + SP R G+
Sbjct: 193 WECGRLSYCLEDPAGGFQ-QLLLEPVLKFHYRLKRLQLHKEEYVLMQAISLFSPDRPGVV 251
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ +V++++ + L + N P+ + L ++++ML +LR++N H++KL+ Q
Sbjct: 252 QRSVVDQLQERFAIALKAYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQKLLRIQ 309
>UNIPROTKB|P51129 [details] [associations]
symbol:rxrg "Retinoic acid receptor RXR-gamma" species:8355
"Xenopus laevis" [GO:0043565 "sequence-specific DNA binding"
evidence=IPI] [GO:0046966 "thyroid hormone receptor binding"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR000003 InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
HOVERGEN:HBG005606 InterPro:IPR021780 Pfam:PF11825 EMBL:L11443
PIR:D41977 ProteinModelPortal:P51129 SMR:P51129 Uniprot:P51129
Length = 470
Score = 192 (72.6 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 50/163 (30%), Positives = 85/163 (52%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L +DQV LL+AG E+L+ + S + ++ G + R S H
Sbjct: 287 LVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 346
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
++ + D + + ++ + + +E+G +IV+ +P GL N VE +R K+
Sbjct: 347 NAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYA 406
Query: 254 MLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +P+Q A+L+ LP LR++ E L F++
Sbjct: 407 TLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 449
>UNIPROTKB|F1Q075 [details] [associations]
symbol:NR1I2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046618 "drug export" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0042908 "xenobiotic transport"
evidence=IEA] [GO:0042738 "exogenous drug catabolic process"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0006805
"xenobiotic metabolic process" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0045892
GO:GO:0045893 GO:GO:0046872 GO:GO:0008144 GO:GO:0004879
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0046618 GO:GO:0006805
GO:GO:0042738 GeneTree:ENSGT00680000099585 OMA:YIECNRP
GO:GO:0042908 EMBL:AAEX03017018 EMBL:AAEX03017017
Ensembl:ENSCAFT00000017654 Uniprot:F1Q075
Length = 439
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 49/178 (27%), Positives = 91/178 (51%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL ++ + + V+ FAK I F L +DQ++LLK FEV +R +F+++T +
Sbjct: 246 LLPHMADMSTYMFKGVINFAKVISHFRELPIEDQISLLKGATFEVCQLRFNTVFNAETGT 305
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
C + D + L++ + F RL L L E L +I + SP R G+
Sbjct: 306 WECGRLSYCLEDPAGGFQ-QLLLEPVLKFHYRLKRLQLHKEEYVLMQAISLFSPDRPGVV 364
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+ +V++++ + L + N P+ + L ++++ML +LR++N H++KL+ Q
Sbjct: 365 QRSVVDQLQERFAIALKAYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQKLLRIQ 422
>UNIPROTKB|Q2V0W3 [details] [associations]
symbol:CAR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005829 GO:GO:0005634 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655
HOGENOM:HOG000220844 eggNOG:NOG251788 KO:K08541 OMA:PRDRFLY
OrthoDB:EOG4CVG7C EMBL:CU463216 EMBL:DQ249306 EMBL:AB214979
RefSeq:NP_001033085.1 UniGene:Ssc.55516 SMR:Q2V0W3 STRING:Q2V0W3
Ensembl:ENSSSCT00000006962 GeneID:654317 KEGG:ssc:654317
Uniprot:Q2V0W3
Length = 348
Score = 185 (70.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 44/175 (25%), Positives = 87/175 (49%)
Query: 113 PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM 172
PL + LL F++ + I+ +++F K +P F L +DQ++LLK E+ + L
Sbjct: 150 PLVPELSLLMHFADINTFMIQQIIKFTKDLPLFRSLPMEDQISLLKGAAVEICQIVLNTT 209
Query: 173 FDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVIS 232
F QT +C + D H ++ +F F + L L L + E L ++ + S
Sbjct: 210 FCLQTQKFLCGPLRYTIEDGAHVGFQEEFLELLFGFHKTLRRLQLQEPEYVLMVAVALFS 269
Query: 233 PSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQ 285
P R G+ ++ +++++ ++ L + P + L A+L+ +L +LR++N+
Sbjct: 270 PDRPGVTQRKEIDQLQEEMALTLQSYIKGQQPSLRDRFLYAKLLGLLAELRSINK 324
Score = 39 (18.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 77 AFTADKIEPMLRRAREHPTYTACPSTLACPLN 108
A T + + RR T CP +C +N
Sbjct: 25 ALTCEGCKGFFRRTVNKSTSLICPFAGSCKVN 56
>UNIPROTKB|Q2KIF4 [details] [associations]
symbol:NR1I3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003707 "steroid hormone receptor activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0005829 GO:GO:0005634 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00680000099585 HOVERGEN:HBG108655
HOGENOM:HOG000220844 CTD:9970 eggNOG:NOG251788 KO:K08541
OMA:PRDRFLY OrthoDB:EOG4CVG7C EMBL:DAAA02006955 EMBL:BC112658
IPI:IPI00700075 RefSeq:NP_001073236.1 UniGene:Bt.37359 SMR:Q2KIF4
STRING:Q2KIF4 Ensembl:ENSBTAT00000012145 GeneID:493711
KEGG:bta:493711 InParanoid:Q2KIF4 NextBio:20865459 Uniprot:Q2KIF4
Length = 348
Score = 184 (69.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 42/167 (25%), Positives = 86/167 (51%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL F++ + ++ +++F K +P F L +DQ++LLK E+ + L F QT +
Sbjct: 157 LLMHFADVITFMVQQIIKFTKDLPLFRSLPMEDQISLLKGAAIEICHIALNTTFCLQTQN 216
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+C + D+ + ++ +F F L L L + E L +++ + SP R G+
Sbjct: 217 FLCGPLRYTIEDAAQAGFQEEFLEFLFGFHRTLRQLQLQEPEYVLMAAMALFSPDRPGIT 276
Query: 240 NKELVERMRGKLENMLMHVLN--QNHPEQMNLCAELISMLPDLRTLN 284
+E +++++ ++ L + + Q P L A+L+ +L DLR+++
Sbjct: 277 CREEIDQLQEEMALTLQNYIQGQQPRPRDRFLYAKLLGLLADLRSIH 323
Score = 40 (19.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 77 AFTADKIEPMLRRAREHPTYTACPSTLACPLN 108
A T + + RR T CP +C +N
Sbjct: 25 ALTCEGCKGFFRRTVNKSTSLTCPFAGSCEVN 56
>ZFIN|ZDB-GENE-040718-34 [details] [associations]
symbol:rxrgb "retinoid X receptor, gamma b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043401 "steroid hormone mediated signaling pathway"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000003 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00545 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 ZFIN:ZDB-GENE-040718-34 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700 GO:GO:0006351
GeneTree:ENSGT00690000101777 InterPro:IPR021780 Pfam:PF11825
EMBL:BX296562 IPI:IPI00972012 Ensembl:ENSDART00000110950
Bgee:F1QDD2 Uniprot:F1QDD2
Length = 458
Score = 183 (69.5 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 51/164 (31%), Positives = 85/164 (51%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
+VE+AKRIP FS L DDQV LL+AG E+L+ + + + ++ G + R S H
Sbjct: 274 LVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRSSAH 333
Query: 195 SSNARFLMDSMF-DFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLEN 253
S+ + + + + ++ + + TE+G +IV+ +P GL N VE +R K+
Sbjct: 334 SAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREKVYA 393
Query: 254 MLMHVLNQNHPEQMNL-CAELISMLPDLRTLNQLHSEKLVAFQM 296
L Q +P+Q A+L+ LP LR++ E L F++
Sbjct: 394 SLETYTKQKYPDQPGRRFAKLLLRLPALRSIGLKCLEHLFFFKL 437
>UNIPROTKB|P62044 [details] [associations]
symbol:NR1I3 "Nuclear receptor subfamily 1 group I member
3" species:34884 "Callorhinus ursinus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0005737
GO:GO:0005856 GO:GO:0046872 GO:GO:0043565 GO:GO:0003707
GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508
GO:GO:0003700 GO:GO:0006351 HOVERGEN:HBG108655 EMBL:AB109554
ProteinModelPortal:P62044 SMR:P62044 Uniprot:P62044
Length = 348
Score = 180 (68.4 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 45/178 (25%), Positives = 89/178 (50%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL+ F+E + +++V++F K +P F L +DQ++LLK E+ + L F QT +
Sbjct: 157 LLKHFAEVNTFMVQEVIKFTKDLPLFRSLPMEDQISLLKGAAVEICHIALNTTFCLQTRN 216
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+C + D +H ++ +F F L L L + E L +++ + SP R G+
Sbjct: 217 FLCGPLCYALEDGVHVGFQEEFLELLFRFHATLRRLQLQEPEYVLMAAMALFSPDRPGVT 276
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+E ++R++ L + P + L A+L+ +L +LR+++ + ++ Q
Sbjct: 277 RREEIDRLQEVTALTLQSYIKGQPPRPRDRFLYAKLLGLLAELRSIDNAYGYQIQHIQ 334
>UNIPROTKB|F1PKC4 [details] [associations]
symbol:NR1I3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099585 OMA:PRDRFLY EMBL:AAEX03018444
EMBL:AAEX03018445 UniGene:Cfa.38972 Ensembl:ENSCAFT00000014526
NextBio:20861975 Uniprot:F1PKC4
Length = 348
Score = 181 (68.8 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 42/166 (25%), Positives = 81/166 (48%)
Query: 132 IRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRD 191
++ V++F K +P F L +DQ++LLK E+ + L F QT +C + D
Sbjct: 169 VQQVIKFTKDLPLFRSLPMEDQISLLKGAAVEICHIALNTTFCLQTRHFLCGPLRYTMED 228
Query: 192 SIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKL 251
+H+ ++ +F F L L L + E L +++ + SP R G+ +E ++ ++ +
Sbjct: 229 GVHAGFQEEFLELLFRFHGTLKRLQLQEPEYVLLAAMALFSPDRPGVTRREEIDHLQEVM 288
Query: 252 ENMLMHVLN--QNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
L + Q P L A+L+ +L +LR++N + ++ Q
Sbjct: 289 ALTLQSYIRGQQPRPRDRFLYAKLLGLLAELRSINNAYGHQIQHIQ 334
Score = 39 (18.8 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 77 AFTADKIEPMLRRAREHPTYTACPSTLACPLN 108
A T + + RR T CP +C +N
Sbjct: 25 ALTCEGCKGFFRRTVSKSTGLTCPFAGSCKVN 56
>UNIPROTKB|H0Y8E2 [details] [associations]
symbol:NR1I2 "Nuclear receptor subfamily 1, group I, member
2, isoform CRA_c" species:9606 "Homo sapiens" [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] [GO:0004887 "thyroid
hormone receptor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR001728 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399
SMART:SM00430 GO:GO:0005634 GO:GO:0046872 EMBL:CH471052
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887 EMBL:AC069444
UniGene:Hs.7303 HGNC:HGNC:7968 ProteinModelPortal:H0Y8E2 SMR:H0Y8E2
Ensembl:ENST00000466380 Bgee:H0Y8E2 Uniprot:H0Y8E2
Length = 397
Score = 181 (68.8 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 46/178 (25%), Positives = 91/178 (51%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL ++ + + ++ FAK I F L +DQ++LLK FE+ +R +F+++T +
Sbjct: 202 LLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGT 261
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
C + D+ + L++ M F L L L + E L +I + SP R G+
Sbjct: 262 WECGRLSYCLEDTAGGFQ-QLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVL 320
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+V++++ + L + N P+ + L ++++ML +LR++N H+++L+ Q
Sbjct: 321 QHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQ 378
>UNIPROTKB|J3KPQ3 [details] [associations]
symbol:NR1I2 "Nuclear receptor subfamily 1 group I member
2" species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003707
"steroid hormone receptor activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
InterPro:IPR000536 InterPro:IPR001628 InterPro:IPR001723
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
EMBL:CH471052 GO:GO:0043565 GO:GO:0003707 GO:GO:0008270
Gene3D:1.10.565.10 Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0003700
GO:GO:0006351 EMBL:AC069444 UniGene:Hs.7303 HGNC:HGNC:7968
ProteinModelPortal:J3KPQ3 Ensembl:ENST00000393716 Uniprot:J3KPQ3
Length = 434
Score = 181 (68.8 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 46/178 (25%), Positives = 91/178 (51%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL ++ + + ++ FAK I F L +DQ++LLK FE+ +R +F+++T +
Sbjct: 239 LLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGT 298
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
C + D+ + L++ M F L L L + E L +I + SP R G+
Sbjct: 299 WECGRLSYCLEDTAGGFQ-QLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVL 357
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+V++++ + L + N P+ + L ++++ML +LR++N H+++L+ Q
Sbjct: 358 QHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQ 415
>UNIPROTKB|O75469 [details] [associations]
symbol:NR1I2 "Nuclear receptor subfamily 1 group I member
2" species:9606 "Homo sapiens" [GO:0003707 "steroid hormone
receptor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008144 "drug binding" evidence=IDA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0042908 "xenobiotic transport" evidence=IDA] [GO:0006805
"xenobiotic metabolic process" evidence=IDA] [GO:0042738 "exogenous
drug catabolic process" evidence=IDA] [GO:0046618 "drug export"
evidence=IDA] [GO:0003713 "transcription coactivator activity"
evidence=TAS] [GO:0007165 "signal transduction" evidence=TAS]
[GO:0008202 "steroid metabolic process" evidence=TAS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0030522
"intracellular receptor mediated signaling pathway" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR008946 InterPro:IPR013088
Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047 PRINTS:PR00398
PROSITE:PS00031 PROSITE:PS51030 SMART:SM00399 SMART:SM00430
GO:GO:0045892 GO:GO:0045893 GO:GO:0005654 GO:GO:0008202
GO:GO:0046872 GO:GO:0008144 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0046618 GO:GO:0003713 GO:GO:0006805
GO:GO:0006367 GO:GO:0042738 DrugBank:DB00783 DrugBank:DB01045
DrugBank:DB00977 DrugBank:DB00163 PDB:1NRL PDB:3CTB PDB:3HVL
PDBsum:1NRL PDBsum:3CTB PDBsum:3HVL PDB:2O9I PDBsum:2O9I
HOVERGEN:HBG108655 EMBL:AY091855 EMBL:AF061056 EMBL:AF084644
EMBL:AF084645 EMBL:AF364606 EMBL:AJ009936 EMBL:AJ009937
EMBL:DQ911122 EMBL:DQ923326 EMBL:EF614253 EMBL:BC017304
IPI:IPI00004364 IPI:IPI00220084 IPI:IPI00220085 IPI:IPI00220086
IPI:IPI00334983 IPI:IPI00783954 IPI:IPI00852956 RefSeq:NP_003880.3
RefSeq:NP_071285.1 RefSeq:NP_148934.1 UniGene:Hs.7303 PDB:1ILG
PDB:1ILH PDB:1M13 PDB:1SKX PDB:2QNV PDB:3R8D PDBsum:1ILG
PDBsum:1ILH PDBsum:1M13 PDBsum:1SKX PDBsum:2QNV PDBsum:3R8D
DisProt:DP00323 ProteinModelPortal:O75469 SMR:O75469 IntAct:O75469
STRING:O75469 PhosphoSite:O75469 PRIDE:O75469
Ensembl:ENST00000337940 GeneID:8856 KEGG:hsa:8856 UCSC:uc003edi.3
UCSC:uc003edj.3 CTD:8856 GeneCards:GC03P119499 HGNC:HGNC:7968
MIM:603065 neXtProt:NX_O75469 PharmGKB:PA378 eggNOG:NOG238483
InParanoid:O75469 KO:K08540 OMA:YIECNRP OrthoDB:EOG4QVCBX
BindingDB:O75469 ChEMBL:CHEMBL3401 EvolutionaryTrace:O75469
GenomeRNAi:8856 NextBio:33249 ArrayExpress:O75469 Bgee:O75469
Genevestigator:O75469 GermOnline:ENSG00000144852 GO:GO:0042908
Uniprot:O75469
Length = 434
Score = 181 (68.8 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 46/178 (25%), Positives = 91/178 (51%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
LL ++ + + ++ FAK I F L +DQ++LLK FE+ +R +F+++T +
Sbjct: 239 LLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGT 298
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
C + D+ + L++ M F L L L + E L +I + SP R G+
Sbjct: 299 WECGRLSYCLEDTAGGFQ-QLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVL 357
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAFQ 295
+V++++ + L + N P+ + L ++++ML +LR++N H+++L+ Q
Sbjct: 358 QHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQ 415
>UNIPROTKB|F1SJB4 [details] [associations]
symbol:RORB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0042462 "eye photoreceptor cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004879
"ligand-activated sequence-specific DNA binding RNA polymerase II
transcription factor activity" evidence=IEA] [GO:0003707 "steroid
hormone receptor activity" evidence=IEA] InterPro:IPR000536
InterPro:IPR001628 InterPro:IPR001723 InterPro:IPR003079
InterPro:IPR008946 InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105
PRINTS:PR00047 PRINTS:PR00398 PRINTS:PR01293 PROSITE:PS00031
PROSITE:PS51030 SMART:SM00399 SMART:SM00430 GO:GO:0005634
GO:GO:0045893 GO:GO:0046872 GO:GO:0004879 GO:GO:0043565
GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10 Gene3D:3.30.50.10
SUPFAM:SSF48508 GO:GO:0030522 GO:GO:0042462
GeneTree:ENSGT00700000104109 OMA:SGHTMRA EMBL:CU468713
EMBL:CU062494 Ensembl:ENSSSCT00000005803 Uniprot:F1SJB4
Length = 452
Score = 182 (69.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 63/237 (26%), Positives = 122/237 (51%)
Query: 63 RMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQ 122
R+ ++++HL+TC +T +++ + A + TY ++ + ++ L Q
Sbjct: 212 RIAQNIIKSHLETCQYTMEELHQL---AWQTHTYEEI----------KAYQSKSREALWQ 258
Query: 123 DFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMIC 182
+ + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+ N+++
Sbjct: 259 QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL- 317
Query: 183 LNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTE-IGLFSSIVVISPSRSGL-RN 240
G+ + +A L+ S+ F +R +++ TE + + ++ +ISPS L +
Sbjct: 318 FEGKYGGMQMFKALDADRLVHSVLFFKKRF--MYMQYTEHLAVAAAGRLISPSVRWLPKA 375
Query: 241 KELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
++ + L ++ + +L P L +LI+ +P + + LH EKL F+ +
Sbjct: 376 RKDTDSEDRALMSLPLCLL----PCLSTL--QLIAKIPTITAVCNLHGEKLQVFKQS 426
Score = 42 (19.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 24 VRFGRVPKREKARILAAMQQ 43
V+FGR+ K+++ + A +Q+
Sbjct: 80 VKFGRMSKKQRDSLYAEVQK 99
>UNIPROTKB|E2RDS9 [details] [associations]
symbol:E2RDS9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004887 "thyroid hormone receptor
activity" evidence=IEA] [GO:0003707 "steroid hormone receptor
activity" evidence=IEA] InterPro:IPR000536 InterPro:IPR001628
InterPro:IPR001723 InterPro:IPR001728 InterPro:IPR008946
InterPro:IPR013088 Pfam:PF00104 Pfam:PF00105 PRINTS:PR00047
PRINTS:PR00398 PRINTS:PR00546 PROSITE:PS00031 PROSITE:PS51030
SMART:SM00399 SMART:SM00430 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0003707 GO:GO:0008270 Gene3D:1.10.565.10
Gene3D:3.30.50.10 SUPFAM:SSF48508 GO:GO:0004887
GeneTree:ENSGT00680000099585 EMBL:AAEX03010994
Ensembl:ENSCAFT00000015367 OMA:GGHCEMD Uniprot:E2RDS9
Length = 417
Score = 179 (68.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 58/240 (24%), Positives = 110/240 (45%)
Query: 53 ALAAELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSH 112
++ E + +++S+ R+ ++ T ++ + + H YT L ++
Sbjct: 175 SIKVEEEGVDKLVSSTTRSIKESVELTQEEHQLINNIVAAHQKYTIPLEETKKFLQKYAN 234
Query: 113 PLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACM 172
P + L+ SE ++ +++F K +PGF L +DQ L K EV+ + A +
Sbjct: 235 P---ELSFLR-LSETVVLHLQGLIDFTKELPGFENLTIEDQTALRKGSKTEVMFLHGAQL 290
Query: 173 FDS-QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVI 231
+ Q S + + + S A + ++F F R++ L++++ E L ++ V
Sbjct: 291 YSQKQCLSSASEKKNLFFKKIMASCIAEEFITTLFYFYRRMSELNITNIEYALLAATTVF 350
Query: 232 SPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKL 291
R L+NK VE ++ + ++L HPE + A LI L +LRTLN +SE L
Sbjct: 351 FSDRPHLKNKRHVENLQEPILHILYKYSKIYHPEDLQHFAHLIGRLTELRTLNHNYSEIL 410
WARNING: HSPs involving 128 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.128 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 585 562 0.0010 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 378
No. of states in DFA: 614 (65 KB)
Total size of DFA: 299 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 55.34u 0.09s 55.43t Elapsed: 00:00:20
Total cpu time: 55.40u 0.10s 55.50t Elapsed: 00:00:21
Start: Thu Aug 15 11:24:27 2013 End: Thu Aug 15 11:24:48 2013
WARNINGS ISSUED: 2