RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3123
(585 letters)
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 176 bits (447), Expect = 7e-52
Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 10/248 (4%)
Query: 57 ELDDEQRML-STVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
E DE+ L TV AH+ T A + + + P+ +
Sbjct: 3 EPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDI---------GQAPIVNAPEGGK 53
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
E F++ +P I VV+FAK++P F L +DQ+ LLK E++ +R A +D
Sbjct: 54 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 113
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
++ ++ + R + + + D++FD L+ +L DTE+ L +++++S R
Sbjct: 114 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDR 173
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQ 295
GL E +E+ + H +N + +L+ + DLR + H+ + + +
Sbjct: 174 PGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMK 233
Query: 296 MTEQQQQL 303
+ +
Sbjct: 234 VECPTELF 241
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 171 bits (434), Expect = 3e-50
Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 19/237 (8%)
Query: 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE 119
+ +++ V +AH +T P L + ++ T + H +Q
Sbjct: 4 QLEELITKVSKAHQETF--------PSLCQLGKYTTN-----------SSADHRVQLDLG 44
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
L FSE + I +VEFAKR+PGF+ L DQ+TLLKA ++L++R+ + + ++
Sbjct: 45 LWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDT 104
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
M +G L R +H++ L D +F FA +L L + DTE GL S+I +I R L
Sbjct: 105 MTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLE 164
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
E V++++ L L + P Q + ++ + DLR ++ +E+ + +M
Sbjct: 165 EPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKM 221
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 171 bits (433), Expect = 6e-50
Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 15/244 (6%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQ 117
+ + R+ ++++HL+TC +T +++ + + + ++ + +
Sbjct: 2 MSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYE-------------EIKAYQSKSR 48
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQT 177
+ L Q + + + I+ VVEFAKRI GF LC +DQ+ LLK+G EV+LVR+ F+
Sbjct: 49 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 108
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSG 237
N++ G+ + + L++ FDFA+ L L L++ EI LFSS V+ISP R+
Sbjct: 109 NTV-LFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAW 167
Query: 238 LRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMT 297
L V++++ K+ L HV+ +NH + L A+LI+ +P + + LH EKL F+ +
Sbjct: 168 LLEPRKVQKLQEKIYFALQHVIQKNHLDDETL-AKLIAKIPTITAVCNLHGEKLQVFKQS 226
Query: 298 EQQQ 301
Sbjct: 227 HPDI 230
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 167 bits (423), Expect = 2e-48
Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 15/241 (6%)
Query: 60 DEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQE 119
+ + + + ++HL+TC + ++++ + + + + ++
Sbjct: 12 ELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQN-------------KQREV 58
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNS 179
+ Q + + + I+ VVEFAKRI GF LC +DQ+ LLKAG EV+ +R+ FDSQ N+
Sbjct: 59 MWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNT 118
Query: 180 MICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ +G+ D S + +F+F + L +HL++ EI LFS+ V++S RS L+
Sbjct: 119 VYF-DGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQ 177
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
K +E+++ K++ L HVL +NH E + +LI + LR L H+EKL+AF+
Sbjct: 178 EKVKIEKLQQKIQLALQHVLQKNHRED-GILTKLICKVSTLRALCGRHTEKLMAFKAIYP 236
Query: 300 Q 300
Sbjct: 237 D 237
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 167 bits (423), Expect = 3e-48
Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 16/256 (6%)
Query: 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRR---------AREHPTYTACPSTLACPL 107
E D + + + +++ + T K +L + + +
Sbjct: 1 ESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKH 60
Query: 108 NPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
+ + Q R ++++ E+AK IPGF L +DQVTLLK GV E++
Sbjct: 61 ITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEII 120
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF---LMDSMFDFAERLNGLHLSDTEI 222
LA + + + ++ G+ + S + M+ F+FA + N L L D+++
Sbjct: 121 YTMLASLMN--KDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDL 178
Query: 223 GLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRT 282
+F +++++S R GL N + +E ++ L L L NHPE L A+L+ + DLR
Sbjct: 179 AIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQ 238
Query: 283 LNQLHSEKLVAFQMTE 298
+ H + L + TE
Sbjct: 239 IVTEHVQLLQVIKKTE 254
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 160 bits (406), Expect = 4e-46
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 17/241 (7%)
Query: 61 EQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQEL 120
++ M+ +V A L +++ P PL + +Q+
Sbjct: 5 QELMIQQLVAAQLQCN----------------KRSFSDQPKVTPWPLGADPQSRDARQQR 48
Query: 121 LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180
F+E +++++V+FAK++PGF L +DQ+ LLKA E++L+ A ++ +T +
Sbjct: 49 FAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECI 108
Query: 181 ICLNGEVLVRDSIH-SSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
L +D H + ++ +F+F+ + L L D E L +I + S R ++
Sbjct: 109 TFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQ 168
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
VE ++ L+ P+ ++ L LRTL+ +HSE++ A ++ ++
Sbjct: 169 EPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDK 228
Query: 300 Q 300
+
Sbjct: 229 K 229
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 160 bits (406), Expect = 4e-46
Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 15/251 (5%)
Query: 56 AELDDEQRML-STVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPL 114
+L EQ L T++ AH ++ P + L
Sbjct: 2 VQLSKEQEELIRTLLGAHTRHMGTMFEQFVQF------------RPPAHLFIHHQPLPTL 49
Query: 115 QGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFD 174
L+ F++ + + V++F K +P F L +DQ++LLK E+ + L F
Sbjct: 50 APVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC 109
Query: 175 SQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS 234
QT + +C + D ++ +F F L L L + E L +++ + SP
Sbjct: 110 LQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPD 169
Query: 235 RSGLRNKELVERMRGKLENMLMHVL--NQNHPEQMNLCAELISMLPDLRTLNQLHSEKLV 292
R G+ ++ +++++ ++ L + Q P L A+L+ +L +LR++N+ + ++
Sbjct: 170 RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQ 229
Query: 293 AFQMTEQQQQL 303
Q L
Sbjct: 230 HIQGLSAMMPL 240
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 158 bits (401), Expect = 8e-45
Identities = 54/275 (19%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 59 DDEQRMLSTVVRAHLDTCAFT----------------ADKIEPMLRRAREHPTYTACPST 102
++++ M+ ++ A + T T + E + +RE +
Sbjct: 4 EEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRK 63
Query: 103 LACPLNPNSHPLQGQQ-----------------ELLQDFSERFSPTIRDVVEFAKRIPGF 145
C L + LL ++ + + ++ FAK I F
Sbjct: 64 DLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYF 123
Query: 146 SLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSM 205
L +DQ++LLK FE+ +R +F+++T + C + + L++ M
Sbjct: 124 RDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLSYCLEDTAGGFQQLLLEPM 182
Query: 206 FDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPE 265
F L L L + E L +I + SP R G+ +V++++ + L + N P+
Sbjct: 183 LKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQ 242
Query: 266 QMN--LCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ L ++++ML +LR++N H+++L+ Q
Sbjct: 243 PAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIH 277
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 156 bits (395), Expect = 9e-45
Identities = 46/235 (19%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+++ +VR+H+DT P + + + +Q
Sbjct: 4 LITALVRSHVDTT-----------------------PDPSCLDYSHYEEQSMSEADKVQQ 40
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
F + + ++ + +FA++IPG+ L +DQ L ++ E+ ++RLA +I
Sbjct: 41 FYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFC 100
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
NG VL R S ++ + +F+ L+ L + + ++ + R GLR +
Sbjct: 101 NGTVLHRTQCLRSFGE-WLNDIMEFSRSLHNLEIDISAFACLCAL-TLITERHGLREPKK 158
Query: 244 VERMRGKLENMLMHVLNQNHP--EQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
VE+++ K+ L + N ++ + + L+ LP+LR+L+ +++ ++
Sbjct: 159 VEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKL 213
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 155 bits (394), Expect = 1e-44
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 22/238 (9%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
+L+++VRAHLD+ P + H + +Q
Sbjct: 2 LLTSLVRAHLDSG--------PSTAKLDYSKFQELVLP----------HFGKEDAGDVQQ 43
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
F + S ++ + ++A++IPGF+ L DQ LL++ E+ ++RLA +I
Sbjct: 44 FYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFC 103
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
+G VL R +DS+ F+ L+ L + S++V+I R GL+
Sbjct: 104 SGLVLHRLQCARGFGD-WIDSILAFSRSLHSLLVDVPAFACLSALVLI-TDRHGLQEPRR 161
Query: 244 VERMRGKLENMLMHVL--NQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
VE ++ ++ + L + P+ + + L+ LP+LRTL +++ ++ +
Sbjct: 162 VEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDL 219
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 156 bits (396), Expect = 1e-44
Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 16/242 (6%)
Query: 59 DDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQ 118
+++QR+++ ++ AH T T R + Q
Sbjct: 9 EEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRV------------NDGGGSVTLELSQL 56
Query: 119 ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTN 178
+L ++ S +I+ V+ FAK IPGF L +DQ+ LLK+ EV+++R F
Sbjct: 57 SMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDM 116
Query: 179 SMICLNGEVLVRDSIHSSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
S C N + R S + L++ + F L L+L + E L +I ++SP R
Sbjct: 117 SWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRP 176
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVAF 294
G+++ L+E ++ +L N L + HP + L A++I L DLR+LN+ HS++
Sbjct: 177 GVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCL 236
Query: 295 QM 296
Sbjct: 237 SF 238
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 155 bits (393), Expect = 2e-44
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 22/238 (9%)
Query: 64 MLSTVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQD 123
++S +VRAH+D+ R + +P Y + +Q
Sbjct: 2 LISALVRAHVDS---NPAMTSLDYSRFQANPDYQ---------------MSGDDTQHIQQ 43
Query: 124 FSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICL 183
F + + ++ + +A++IPGF+ L DQ L ++ E+ ++RLA + +I
Sbjct: 44 FYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFC 103
Query: 184 NGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKEL 243
NG VL R +DS+ +F+ L +++ + +++ + R GL+ +
Sbjct: 104 NGVVLHRLQCVRGFGE-WIDSIVEFSSNLQNMNIDISAFSCIAAL-AMVTERHGLKEPKR 161
Query: 244 VERMRGKLENMLMHVLNQNHP--EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQ 299
VE ++ K+ N L + N+ + N ++L+ LP+LRTL +++ ++ +
Sbjct: 162 VEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDL 219
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 153 bits (388), Expect = 1e-43
Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 15/242 (6%)
Query: 57 ELDDEQRML-STVVRAHLDTCAFTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQ 115
+L+ +Q+ L ++ AH D+ A + P
Sbjct: 2 QLNQQQKELVQILLGAHTRHVGPLFDQFVQFKPPAYLFMHHRPFQ------------PRG 49
Query: 116 GQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDS 175
LL F++ + ++ +++F K +P F L +DQ++LLK E+L + L F
Sbjct: 50 PVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCL 109
Query: 176 QTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
QT + C + D++H+ ++S+ F + L GLHL + E L ++ + SP R
Sbjct: 110 QTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDR 169
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQNHPEQMN--LCAELISMLPDLRTLNQLHSEKLVA 293
G+ +E +++++ ++ +L + + + + L A+L+ +L DLR++N +S +L
Sbjct: 170 PGVTQREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYELQR 229
Query: 294 FQ 295
+
Sbjct: 230 LE 231
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 147 bits (372), Expect = 5e-41
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%)
Query: 90 AREHPTYTACPSTLACPLNPNSHPLQGQQE--LLQDFSERFSPTIRDVVEFAKRIPGFSL 147
+ T L N P + + T+R++ EFAK IP FS
Sbjct: 39 IHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSS 98
Query: 148 LCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARF---LMDS 204
L +DQVTLLK GV E + LA + + + ++ NG V S + +++
Sbjct: 99 LFLNDQVTLLKYGVHEAIFAMLASIVN--KDGLLVANGSGFVTREFLRSLRKPFSDIIEP 156
Query: 205 MFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHP 264
F+FA + N L L D+++ LF + +++ R GL N VE ++ + L L NHP
Sbjct: 157 KFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQDTILRALEFHLQANHP 216
Query: 265 EQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTE 298
+ L +L+ + DLR L H++ + + TE
Sbjct: 217 DAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTE 250
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 145 bits (367), Expect = 1e-40
Identities = 46/198 (23%), Positives = 98/198 (49%), Gaps = 4/198 (2%)
Query: 106 PLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVL 165
+ + + +E T++ +VEFAK +PGF+ + DQ+TLLKA EV+
Sbjct: 35 QTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVM 94
Query: 166 LVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLF 225
++R+A +D+ T+S++ N + RD+ + ++++ + F + + + + L
Sbjct: 95 MLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALL 154
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH---PEQMNLCAELISMLPDLRT 282
++I VI R GL LVE ++ N L + + P + +++ +L ++RT
Sbjct: 155 TAI-VIFSDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRT 213
Query: 283 LNQLHSEKLVAFQMTEQQ 300
L +S ++ ++ ++
Sbjct: 214 LGMQNSNMCISLKLKNRK 231
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 144 bits (363), Expect = 3e-40
Identities = 51/181 (28%), Positives = 99/181 (54%), Gaps = 3/181 (1%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
+E +E + ++ +VEF K++PGF L H+DQ+ LLK E + +R A +F+ +
Sbjct: 40 AEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKK 99
Query: 177 TNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS 236
S + ++L +S + + MF F + + L ++ E L ++IV++SP R
Sbjct: 100 LPSG---HSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQ 156
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
++++E VE+++ L ++L + + PE A L+ L +LRT N H+E L+++++
Sbjct: 157 YIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV 216
Query: 297 T 297
Sbjct: 217 N 217
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 137 bits (345), Expect = 3e-37
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 1/198 (0%)
Query: 107 LNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLL 166
+ + + + T+ ++ EFAK IPGF+ L +DQVTLLK GV+E +
Sbjct: 58 VANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIF 117
Query: 167 VRLACMFDSQTNSMICLNGEVLVRD-SIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLF 225
L+ + + + NG + +M+ FDFA + N L L D++I LF
Sbjct: 118 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLF 177
Query: 226 SSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQ 285
+ ++ R GL N +E+M+ + ++L L NHP+ + L +L+ + DLR L
Sbjct: 178 VAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVT 237
Query: 286 LHSEKLVAFQMTEQQQQL 303
H++ + + TE L
Sbjct: 238 EHAQLVQIIKKTESDAAL 255
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 125 bits (315), Expect = 2e-33
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 100 PSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKA 159
P T + + + + + +VE+AKRIP FS L DDQV LL+A
Sbjct: 16 PKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRA 75
Query: 160 GVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSM-FDFAERLNGLHLS 218
G E+L+ + + + ++ G + R+S HS+ + D + + ++ + +
Sbjct: 76 GWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMD 135
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
TE+G +IV+ +P GL N VE +R K+ L +PEQ A+L+ LP
Sbjct: 136 KTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 195
Query: 279 DLRTLNQLHSEKLVAFQM 296
LR++ E L F++
Sbjct: 196 ALRSIGLKCLEHLFFFKL 213
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 124 bits (313), Expect = 3e-33
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Query: 121 LQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSM 180
+ D E + +VE+AK IP F L DDQV LL+A E LL+ + +
Sbjct: 39 IADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVL 98
Query: 181 ICLNGEVLVRDSIHSSN-ARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLR 239
+ N ++ R + +R + + + L + D E +I+ P GL
Sbjct: 99 LLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLS 158
Query: 240 NKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
+ ++R+R +++ L +N + EL+ +LP L+++ E++ ++
Sbjct: 159 DPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL 215
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 124 bits (312), Expect = 3e-33
Identities = 32/188 (17%), Positives = 76/188 (40%)
Query: 109 PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
P+ + L + + ++ +AK IPGFS L DQ++LL++ E+L++
Sbjct: 20 PDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILG 79
Query: 169 LACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+ S + ++ + ++ D + L +++ ++ + L E +I
Sbjct: 80 VVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAI 139
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHS 288
+ + + + E V++++ L L H E +++ LP LR +
Sbjct: 140 ALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAV 199
Query: 289 EKLVAFQM 296
+ ++
Sbjct: 200 QHFYNIKL 207
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 123 bits (310), Expect = 1e-32
Identities = 42/211 (19%), Positives = 84/211 (39%), Gaps = 6/211 (2%)
Query: 92 EHPTYTACPSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCH 150
E +A S+ + ++ + T+ +VE+A+ F L
Sbjct: 14 EPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSIFFRELKV 73
Query: 151 DDQVTLLKAGVFEVLLVRLA--CMFDSQTNSMICLNGEVLVRDSIHSSNARF---LMDSM 205
DDQ+ LL+ E+L++ + + ++ + GE + +I S L+
Sbjct: 74 DDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLA 133
Query: 206 FDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPE 265
+ RL L E +V+ S L N +LVE ++ ++ L+ N+P+
Sbjct: 134 QELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 193
Query: 266 QMNLCAELISMLPDLRTLNQLHSEKLVAFQM 296
Q +L+ LP+LR +++ + L +
Sbjct: 194 QTEKFGQLLLRLPELRAISKQAEDYLYYKHV 224
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 122 bits (307), Expect = 2e-32
Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 4/192 (2%)
Query: 109 PNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVR 168
P+ G + + F I + +AK IPGFS L DQ+++L++ EVL++
Sbjct: 20 PDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLG 79
Query: 169 LACMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSI 228
+A + + VL + ++ L ++ RL L L E L ++
Sbjct: 80 VAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKAL 139
Query: 229 VVISPSRSGLRNKELVERMRGKLENMLMHVLNQNH----PEQMNLCAELISMLPDLRTLN 284
+ + + + E VE++R L L+ + L+ LP LR
Sbjct: 140 ALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTA 199
Query: 285 QLHSEKLVAFQM 296
++
Sbjct: 200 GKVLAHFYGVKL 211
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 115 bits (288), Expect = 2e-29
Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 31/247 (12%)
Query: 78 FTADKIEPMLRRAREHPTYTACPSTLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVE 137
F+ ++I +RA E + L P + + + + + +VE
Sbjct: 1 FSIERIIEAEQRA-ETQCGDRALTFLRVGPYSTVQPDY--KGAVSALCQVVNKQLFQMVE 57
Query: 138 FAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA--------------------------- 170
+A+ +P F+ + DDQV LLKA E+L+ +A
Sbjct: 58 YARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFER 117
Query: 171 CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDS-MFDFAERLNGLHLSDTEIGLFSSIV 229
Q + R+S + + D + + + ++ L+L E+ +I+
Sbjct: 118 RSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAII 177
Query: 230 VISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSE 289
+ +P G++++ +E R K+ L HP A+L+ LP LR+++ +
Sbjct: 178 LYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQD 237
Query: 290 KLVAFQM 296
L F++
Sbjct: 238 HLFLFRI 244
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 112 bits (281), Expect = 9e-29
Identities = 37/207 (17%), Positives = 84/207 (40%), Gaps = 13/207 (6%)
Query: 102 TLACPLNPNSHPLQGQQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGV 161
+ + P + ++ + + ++ +AKR+PGF L DQV LL+
Sbjct: 19 PILYSEYDPTRPFS-EASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAW 77
Query: 162 FEVLLVRLACMFDSQTNSMICLNGEVLVRDSIHSSNA-RFLMDSMFDFAERLNGLHLSDT 220
E+L++ L ++ +L R+ + D + + R ++L
Sbjct: 78 LEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGE 137
Query: 221 EIGLFSSIVVISP--------SRSGLRNKELVERMRGKLENMLMHVLNQ---NHPEQMNL 269
E SI++++ + L K+ + R+ K+ + L+H++ + +Q
Sbjct: 138 EFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQR 197
Query: 270 CAELISMLPDLRTLNQLHSEKLVAFQM 296
A+L+ +L +R ++ E L + +
Sbjct: 198 LAQLLLILSHIRHMSNKGMEHLYSMKC 224
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 112 bits (281), Expect = 1e-28
Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 118 QELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA------- 170
+ + + + I +V +A+ IP FS L +DQ+ L+K E+LL +A
Sbjct: 41 RAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFL 100
Query: 171 -----------CMFDSQTNSMICLNGEVLVRDSIHSSNARFLMDS-MFDFAERLNGLHLS 218
S M + G L R+S + + D + + + ++ L +
Sbjct: 101 TEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVD 160
Query: 219 DTEIGLFSSIVVISPSRSGLRNKELVERMRGKLENMLMHVLNQNHPEQMNLCAELISMLP 278
E +I++++P GL+N++ VE +R K+ L ++ + A L+ LP
Sbjct: 161 QAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLP 220
Query: 279 DLRTLNQLHSEKLVAFQM 296
LR+++ E L F +
Sbjct: 221 ALRSISLKSFEHLFFFHL 238
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 104 bits (260), Expect = 5e-26
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 11/191 (5%)
Query: 117 QQELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQ 176
+ ++ ++ + ++ +AK+IPGF L DQV LL++ EVL+V L
Sbjct: 30 EASMMMSLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDH 89
Query: 177 TNSMICLNGEVLVRDSIHS-SNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSR 235
+I VL RD + D + R L L E ++++++ S
Sbjct: 90 PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSM 149
Query: 236 SGLRNKELVERMRGKLENMLMHVLNQ----------NHPEQMNLCAELISMLPDLRTLNQ 285
L + KL ++L V + + +Q A L+ +L +R ++
Sbjct: 150 YPLASANQEAESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISN 209
Query: 286 LHSEKLVAFQM 296
E L++ +
Sbjct: 210 KGMEHLLSMKC 220
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 102 bits (255), Expect = 3e-25
Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 135 VVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLACMFDSQTNSMICLNGEVLVRDSIH 194
VV++AK +PGF L DDQ+ +++ +++ + + NS + LV +
Sbjct: 47 VVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYR 106
Query: 195 SSNARF--LMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRS-GLRNKELVERMRGKL 251
+R M ++ L ++ E ++++ S GL+N++ + +R
Sbjct: 107 MHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNY 166
Query: 252 ENMLMHVLNQNHP---EQMNLCAELISMLPDLRTLNQLHSEKL 291
L ++ +L +L ++ + + +
Sbjct: 167 IKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFT 209
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 99.3 bits (247), Expect = 4e-24
Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 10/204 (4%)
Query: 100 PSTLACPLNPNSHPLQGQQ-ELLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLK 158
P + + L ER + VV+++K +PGF L DDQ+TL++
Sbjct: 15 PDVIYAGHDNTKPDTSSSLLTSLNQLGER---QLLSVVKWSKSLPGFRNLHIDDQITLIQ 71
Query: 159 AGVFEVLLVRLAC--MFDSQTNSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLH 216
+++ L + +L + S+ L +M+ + L
Sbjct: 72 YSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQ 131
Query: 217 LSDTEIGLFSSIVVISPS-RSGLRNKELVERMRGKLENMLMHVLNQNH---PEQMNLCAE 272
+S E +++++ GLR++ E MR L+ + +
Sbjct: 132 VSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQ 191
Query: 273 LISMLPDLRTLNQLHSEKLVAFQM 296
L +L +L L + + +
Sbjct: 192 LTKLLDNLHDLVKQLHLYCLNTFI 215
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 96.3 bits (239), Expect = 4e-23
Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 6/178 (3%)
Query: 120 LLQDFSERFSPTIRDVVEFAKRIPGFSLLCHDDQVTLLKAGVFEVLLVRLA--CMFDSQT 177
++ + + V++AK IPGF L DDQ+TLL+ ++ L S
Sbjct: 30 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSA 89
Query: 178 NSMICLNGEVLVRDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPS-RS 236
N + ++ + + M + L+ L +S E +++++S +
Sbjct: 90 NLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKD 149
Query: 237 GLRNKELVERMRGKLENMLMHVLNQNH---PEQMNLCAELISMLPDLRTLNQLHSEKL 291
GL+++EL + +R L + + + +L +L + + +
Sbjct: 150 GLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYC 207
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 29.2 bits (64), Expect = 1.3
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Query: 190 RDSIHSSNARFLMDSMFDFAERLNGLHLSDTEIGLFSSIVVISPSRSGLRNK--ELVERM 247
RD H+ ++ +D + A L+ + E+ + S + R+ E +E +
Sbjct: 16 RDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAV 75
Query: 248 RGKLENMLMHVLNQNHPEQMNLCAELISMLPDLRTLNQLHSEKLVAFQMTEQQQQL 303
G++ + + L ++ + + +E V+ Q E + L
Sbjct: 76 AGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNL 131
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 28.9 bits (64), Expect = 2.2
Identities = 12/121 (9%), Positives = 26/121 (21%)
Query: 443 VLKRILQAPPLDTSSLMDEAYKPHKKFRALRQKDSAEAEPLHPSLASSHSMLAKSLMEGP 502
+R+ + + +R + +K + P A + A +
Sbjct: 344 QDRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVNNCVRPSKLHPAGYLTSAAHKASQSL 403
Query: 503 RMTPDQLKRTEIVHNYIMRTDSPPSAYFPRSWHSSSVIKPAPPATVTSNALLELQVAATS 562
D+ E S + + + T L
Sbjct: 404 LDPLDKFIFAENEWIGAQGQFGGDHPSAREDLDVSVMRRLTKSSAKTQRVGYVLHRTNLM 463
Query: 563 Q 563
Q
Sbjct: 464 Q 464
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 27.6 bits (60), Expect = 3.3
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTY 96
EL + +ML R F ++ P+ + + +
Sbjct: 6 ELPETHQMLRQTCR------DFAEKELVPIAAQLDKEHLF 39
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 27.7 bits (60), Expect = 3.4
Identities = 4/40 (10%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTY 96
+L ++ ++ R + +++ P + A + +
Sbjct: 13 QLTTDEILIRDTFR------TYCQERLMPRILLANRNEVF 46
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 26.9 bits (58), Expect = 6.4
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 6/40 (15%)
Query: 57 ELDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTY 96
E E+R + R F ++ P +
Sbjct: 5 EEGAEERQVLGPFR------EFLKAEVAPGAAERDRTGAF 38
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 26.7 bits (58), Expect = 6.8
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTY 96
L +EQR L + F + + P + +
Sbjct: 8 LSEEQRQLRQTMA------KFLQEHLAPKAQEIDRSNEF 40
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 26.4 bits (57), Expect = 8.0
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 58 LDDEQRMLSTVVRAHLDTCAFTADKIEPMLRRAREHPTY 96
L++EQ+ V F A ++ P + + +
Sbjct: 10 LNEEQKEFQKVAF------DFAAREMAPNMAEWDQKELF 42
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III
{Escherichia coli [TaxId: 562]}
Length = 297
Score = 26.5 bits (57), Expect = 8.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 238 LRNKELVERMRGKLENMLMHVLNQ 261
RN E+ + + G EN L VL+
Sbjct: 5 RRNLEITQNLAGGAENTLASVLDC 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.128 0.365
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,005,764
Number of extensions: 89109
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 42
Length of query: 585
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,171,896
Effective search space: 580088520
Effective search space used: 580088520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)