BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3124
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/382 (54%), Positives = 287/382 (75%), Gaps = 2/382 (0%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAITK+ A+ G +KF +++ID APEE+ARGITIN AHVEYS
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS 62
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T RHYAHTDCPGHADY+KNMI+G + +DG I+VVAA++G MPQTREHLLL++QIG+++V
Sbjct: 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHV 122
Query: 165 VVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
VVYVNKAD V D E++ELVELE+R++LT +GY G+ TP + GSAL AL+ ELG S+
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSV 182
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
+LLDA+D +IP P RD+ PF+LP+++ +PGRG+V GT+++G +K+ DE E LG +
Sbjct: 183 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHS 242
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
++ I++F K + A AGDN+G L+R +K + + RG+++AK ++Q H + EA++
Sbjct: 243 KNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQV 302
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+L+K EGGR+KP S ++ MFS TW++ R+ LP + + MPGE +T+ L M
Sbjct: 303 YILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKE-LAMPGEDLKLTLILRQPMI 361
Query: 404 LSKGQTFTIRENNKLVATGIVT 425
L KGQ FT+R+ N+ + TG+VT
Sbjct: 362 LEKGQRFTLRDGNRTIGTGLVT 383
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/389 (52%), Positives = 278/389 (71%), Gaps = 2/389 (0%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAITK+ A+ G +KF +++ID APEE+ARGITIN AHVEYS
Sbjct: 14 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T RHYAHTDCPGHADY+KN I+G + +DG I+VVAA++G PQTREHLLL++QIG+++V
Sbjct: 74 TAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHV 133
Query: 165 VVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
VVYVNKAD V D E +ELVELE+R++LT +GY G+ TP + GSAL AL+ ELG S+
Sbjct: 134 VVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSV 193
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
+LLDA+D +IP P RD+ PF+LP+++ +PGRG+V GT+++G +K+ DE E LG +
Sbjct: 194 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHS 253
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
++ I+ F K + A AGDN+G L+R +K + + RG++ AK ++Q H + EA++
Sbjct: 254 KNIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSIQPHQKVEAQV 313
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+L+K EGGR+KP S + FS TW+ R+ LP + + PGE +T+ L
Sbjct: 314 YILTKEEGGRHKPFVSHFXPVXFSLTWDXACRIILPPGKE-LAXPGEDLKLTLILRQPXI 372
Query: 404 LSKGQTFTIRENNKLVATGIVTKVLGNME 432
L KGQ FT+R+ N+ + TG+VT E
Sbjct: 373 LEKGQRFTLRDGNRTIGTGLVTDTPAXTE 401
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 274/385 (71%), Gaps = 4/385 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 355
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 356 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 415
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 473
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 474 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 593
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 594 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 652
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 653 MDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/386 (52%), Positives = 275/386 (71%), Gaps = 4/386 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 70
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 71 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 130
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 131 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 188
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 189 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 248
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 249 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 308
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 309 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 367
Query: 404 LSKGQTFTIRENNKLVATGIVTKVLG 429
+ G F IRE + V G+V KVLG
Sbjct: 368 MDDGLRFAIREGGRTVGAGVVAKVLG 393
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/386 (52%), Positives = 275/386 (71%), Gaps = 4/386 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 12 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 71
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 72 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 131
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 132 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 189
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 190 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 249
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 250 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 309
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 310 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 368
Query: 404 LSKGQTFTIRENNKLVATGIVTKVLG 429
+ G F IRE + V G+V KVLG
Sbjct: 369 MDDGLRFAIREGGRTVGAGVVAKVLG 394
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 274/385 (71%), Gaps = 4/385 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 355
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 356 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 415
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 473
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 474 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 593
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 594 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 652
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 653 MDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 274/385 (71%), Gaps = 4/385 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 12 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 71
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 72 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 131
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 132 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 189
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 190 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 249
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 250 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 309
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 310 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 368
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 369 MDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 274/385 (71%), Gaps = 4/385 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 70
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 71 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 130
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 131 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 188
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 189 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 248
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 249 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 308
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 309 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 367
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 368 MDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 274/385 (71%), Gaps = 4/385 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 70
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 71 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 130
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 131 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 188
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 189 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 248
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 249 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 308
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 309 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 367
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 368 MDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/385 (52%), Positives = 274/385 (71%), Gaps = 4/385 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 62
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 63 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 122
Query: 165 VVYVNKADL-VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+ D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 123 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 180
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 181 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 240
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 241 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 300
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 301 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 359
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 360 MDDGLRFAIREGGRTVGAGVVAKVL 384
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + + ID+APEE+ARGITIN AHVEY
Sbjct: 12 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 71
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 72 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 131
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 132 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 191
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 192 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 251
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 252 DEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 311
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 312 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 370
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 371 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 405
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV-AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T V AA+ + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV-AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T V AA+ + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/395 (49%), Positives = 275/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV-AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T V AA+ + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+ +
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/395 (48%), Positives = 276/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLVDR-EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+VD E+++LVE+EVRD+L Y + GD P + GSALLAL+ ++
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVG+LLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ + Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLP-QGVEMVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/395 (48%), Positives = 276/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLVDR-EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+VD E+++LVE+EVRD+L Y + GD P + GSALLAL+ ++
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVG+LLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ + Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLP-QGVEMVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/395 (49%), Positives = 276/395 (69%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV-AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T V AA+ + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLVDR-EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+VD E+++LVE+EVRD+L Y + GD P + GSALLAL+ ++
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVG+LLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLP-QGVEMVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/397 (47%), Positives = 272/397 (68%), Gaps = 16/397 (4%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA ++ + + ID+A EE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DC GHADYIKNMI+GA+QMDGAI+VV+A++G+M QTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ----GDSSEL 218
+VV++NK D+V DRE+++LVE+EVRD+L Y + GD + GSALLAL+ ++
Sbjct: 131 IVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKNRKTKR 190
Query: 219 GE----PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
GE I LLDA+D++I VRD+ F++ +++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSKFTCT-ISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + T ++ +++ +K + E AGDNVG+LLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKRGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQ--VRLDLPGEDDGMLMPGEH 391
H ++EA +Y+L K EGGR+ + Y +Q + RT +V VRL E M+M G++
Sbjct: 311 TRHTKFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRLRQGVE---MVMRGDN 367
Query: 392 GTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T T+ L+ ++ L +G F IRE + V G+VTK+L
Sbjct: 368 VTFTVELIKRVALEEGLRFAIREGGRTVGAGVVTKIL 404
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/385 (48%), Positives = 260/385 (67%), Gaps = 18/385 (4%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK T+ ARGITIN +HVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAAITTVLAK-------TYGG-------AARGITINTSHVEYD 56
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 57 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 116
Query: 165 VVYVNKADLVDREIMELVELEV-RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+VD E + + R++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 117 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW--EAKI 174
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 175 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 234
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 235 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 294
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 295 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 353
Query: 404 LSKGQTFTIRENNKLVATGIVTKVL 428
+ G F IRE + V G+V KVL
Sbjct: 354 MDDGLRFAIREGGRTVGAGVVAKVL 378
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/338 (47%), Positives = 233/338 (68%), Gaps = 4/338 (1%)
Query: 93 GITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREH 152
GITIN +HVEY T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 153 LLLSKQIGIDNVVVYVNKADLVDREIMELVELEV-RDVLTAYGYDGDNTPFVFGSALLAL 211
+LL +Q+G+ ++V++NK D+VD E + + R++L+ Y + GD+TP V GSAL AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 212 QGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTI 271
+GD+ E I L LD +IP P R I PF+LPI++ + GRG+V G +++G I
Sbjct: 121 EGDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 272 KRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331
K +E E++G T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK
Sbjct: 179 KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 238
Query: 332 TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEH 391
T++ H ++E+E+Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++
Sbjct: 239 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDN 297
Query: 392 GTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLG 429
+ +TL++ + + G F IRE + V G+V KVLG
Sbjct: 298 IKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG 335
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 321 bits (822), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 161/338 (47%), Positives = 232/338 (68%), Gaps = 4/338 (1%)
Query: 93 GITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREH 152
GITIN +HVEY T TRHYAH D PGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 153 LLLSKQIGIDNVVVYVNKADLVDREIMELVELEV-RDVLTAYGYDGDNTPFVFGSALLAL 211
+LL +Q+G+ ++V++NK D+VD E + + R++L+ Y + GD+TP V GSAL AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 212 QGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTI 271
+GD+ E I L LD +IP P R I PF+LPI++ + GRG+V G +++G I
Sbjct: 121 EGDAE--WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 272 KRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331
K +E E++G T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK
Sbjct: 179 KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 238
Query: 332 TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEH 391
T++ H ++E+E+Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++
Sbjct: 239 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDN 297
Query: 392 GTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLG 429
+ +TL++ + + G F IRE + V G+V KVLG
Sbjct: 298 IKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG 335
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 208/428 (48%), Gaps = 51/428 (11%)
Query: 45 HCNVGTIGHVDHGKTTLTAAI---------------TKVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVDHGK+TL + + A GK F +D+ EE
Sbjct: 9 HMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEE 68
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ RGITI++ +++ T + D PGH D++KNMI+GASQ D AI+VV+A +G+
Sbjct: 69 RERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAG 128
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADL----VDREIMELVELEVRDVLTAYGYDGD 198
QTREHLLL++ +GI+ ++V VNK D D++ E V ++ + GY D
Sbjct: 129 MSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVD 188
Query: 199 NTPFVFGSALLALQGDSSELGEPSI-----HRLLDALDKHIPNPVRDITSPFILPIDNAI 253
PF+ + A +GD+ P++ L++ALD+ P P + + P +P+ N
Sbjct: 189 KIPFI---PVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVY 244
Query: 254 GVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLL 313
+PG G+V +G ++ G ++ D+ + + I++ +++ +A GDN+G +
Sbjct: 245 SIPGAGTVPVGRVETGVLRVGDKVVFM--PPGVVGEVRSIEMHYQQLQQAEPGDNIGFAV 302
Query: 314 RNVKLKQIERGMLLAKAD-TLQMHNRYEAEIYLL--SKAEGGRYKPITSKYIQQMFSRTW 370
R V I+RG + D + +EA I+++ A Y P+ + + SR
Sbjct: 303 RGVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRII 362
Query: 371 NVQVRLD-----LPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQT------FTIRENNKLV 419
++ +LD + ++ L G+ V + + + K F +R+ N+ V
Sbjct: 363 EIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTV 422
Query: 420 ATGIVTKV 427
GIVT V
Sbjct: 423 GIGIVTDV 430
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 208/428 (48%), Gaps = 51/428 (11%)
Query: 45 HCNVGTIGHVDHGKTTLTAAI---------------TKVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVDHGK+TL + + A GK F +D+ EE
Sbjct: 6 HMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEE 65
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ RGITI++ +++ T + D PGH D++KNMI+GASQ D AI+VV+A +G+
Sbjct: 66 RERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAG 125
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADL----VDREIMELVELEVRDVLTAYGYDGD 198
QTREHLLL++ +GI+ ++V VNK D D++ E V ++ + GY D
Sbjct: 126 MSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVD 185
Query: 199 NTPFVFGSALLALQGDSSELGEPSI-----HRLLDALDKHIPNPVRDITSPFILPIDNAI 253
PF+ + A +GD+ P++ L++ALD+ P P + + P +P+ N
Sbjct: 186 KIPFI---PVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVY 241
Query: 254 GVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLL 313
+PG G+V +G ++ G ++ D+ + + I++ +++ +A GDN+G +
Sbjct: 242 SIPGAGTVPVGRVETGVLRVGDKVVFM--PPGVVGEVRSIEMHYQQLQQAEPGDNIGFAV 299
Query: 314 RNVKLKQIERGMLLAKAD-TLQMHNRYEAEIYLL--SKAEGGRYKPITSKYIQQMFSRTW 370
R V I+RG + D + +EA I+++ A Y P+ + + SR
Sbjct: 300 RGVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRII 359
Query: 371 NVQVRLD-----LPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQT------FTIRENNKLV 419
++ +LD + ++ L G+ V + + + K F +R+ N+ V
Sbjct: 360 EIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTV 419
Query: 420 ATGIVTKV 427
GIVT V
Sbjct: 420 GIGIVTDV 427
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 186/371 (50%), Gaps = 48/371 (12%)
Query: 45 HCNVGTIGHVDHGKTTLTAAI---------------TKVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVDHGK+TL + + A K+GK +DR EE
Sbjct: 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE 65
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ RG+TIN+ + + T + D PGH D++KNMI+GASQ D AI+VV+A +G+
Sbjct: 66 RERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADLV-----DREIMELVELEVRDVLTAYGYDG 197
QTREH++L+K +G+D ++V VNK DL ++ E+V+ +V + +YG++
Sbjct: 126 MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVD-QVSKFMRSYGFNT 184
Query: 198 DNTPFVFGSALLALQGDS----SE----LGEPSIHRLLDALDKHIPNPVRDITSPFILPI 249
+ FV ++A GD+ SE P++ LD L+ P + + P +PI
Sbjct: 185 NKVRFV---PVVAPSGDNITHKSENMKWYNGPTLEEYLDQLEL----PPKPVDKPLRIPI 237
Query: 250 DNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNV 309
+ + G G+V +G ++ G +K D +++ + + I+ K+ +A GDN+
Sbjct: 238 QDVYSISGVGTVPVGRVESGVLKVGD--KIVFMPAGKVGEVRSIETHHTKMDKAEPGDNI 295
Query: 310 GVLLRNVKLKQIERGMLLAKADTLQ-MHNRYEAEIYLL--SKAEGGRYKPITSKYIQQMF 366
G +R V+ K I+RG ++ + + + + A I ++ A Y P+ + +
Sbjct: 296 GFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVA 355
Query: 367 SRTWNVQVRLD 377
R + +LD
Sbjct: 356 CRVSELVSKLD 366
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 161/302 (53%), Gaps = 22/302 (7%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
+ N+G GH+DHGKTTL+ +T++A+ D+ PE + RGITI+I +
Sbjct: 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITIDIGFSAFK 69
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGHAD I+ ++S A +D A++VV A EG QT EH+L+ I +
Sbjct: 70 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-I 128
Query: 165 VVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIH 224
+V + K+D E ++ E+ ++ +L + ++ N+ + SA D EL I
Sbjct: 129 IVVITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVD--ELKNLIIT 185
Query: 225 RLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNS 284
L +A +R+ S F +P+D+A + G G+V GTI +G +K DE ++L N
Sbjct: 186 TLNNA------EIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN- 238
Query: 285 KFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-LQMHNRYEAEI 343
+ + IQ F++ V EA+AGD VG+ ++ V KQI RG +L DT LQ ++ A+I
Sbjct: 239 -MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKI 297
Query: 344 YL 345
+
Sbjct: 298 KI 299
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 175/377 (46%), Gaps = 56/377 (14%)
Query: 45 HCNVGTIGHVDHGKTTLTAAI---------------TKVAAKIGKSKFITFDQIDRAPEE 89
H NV IGHVD GK+T T + K AA++GK F +D+ E
Sbjct: 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAE 66
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ RGITI+IA ++ T D PGH D+IKNMI+G SQ D AI+++A G+
Sbjct: 67 RERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAG 126
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADLV--DREIMELVELEVRDVLTAYGYDGDNT 200
QTREH LL+ +G+ ++V VNK D V D + + E + + GY+
Sbjct: 127 ISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTV 186
Query: 201 PFVFGSALLALQGDS-----------------SELGEPSIHRLLDALDKHIPNPVRDITS 243
PFV + GD+ ++ G LL+A+D I P R
Sbjct: 187 PFV---PISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTDK 242
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQVFQKKVSE 302
P LP+ + + G G+V +G ++ G IK ++ F + T + +++ +++ +
Sbjct: 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIK---PGMVVTFAPAGVTTEVKSVEMHHEQLEQ 299
Query: 303 ARAGDNVGVLLRNVKLKQIERGMLL--AKADTLQMHNRYEAEIYLLSKAEGGRYKPITSK 360
GDNVG ++NV +K+I RG + AK D + + A + +L+ I++
Sbjct: 300 GVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAG 354
Query: 361 YIQQMFSRTWNVQVRLD 377
Y + T ++ R D
Sbjct: 355 YSPVLDCHTAHIACRFD 371
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 141/322 (43%), Gaps = 83/322 (25%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA 99
KS N+G +GHVDHGKTTLT A+T V D EE RGITI I
Sbjct: 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIG 51
Query: 100 HVE-----------YSTN------------TRHYAHTDCPGHADYIKNMISGASQMDGAI 136
+ YST+ R + D PGH + M++GAS MDGAI
Sbjct: 52 FADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAI 111
Query: 137 VVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVD--------REIMELVELEVR 187
+V+AA+E PQTREHL+ + IG N+++ NK +LVD R+I E +E
Sbjct: 112 LVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE---- 167
Query: 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFIL 247
G +N P + SAL +I L+ A++ IP P RD P +
Sbjct: 168 ------GTVAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKM 211
Query: 248 PIDNAIGV--PGR------GSVCIGTIKQGTIKRNDEAEL---LGFN-------SKFTCT 289
+ + V PG G V G+I QG +K DE E+ + + T
Sbjct: 212 LVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271
Query: 290 ISEIQVFQKKVSEARAGDNVGV 311
I +Q + V EA G VGV
Sbjct: 272 IVSLQAGGQFVEEAYPGGLVGV 293
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 141/322 (43%), Gaps = 83/322 (25%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA 99
KS N+G +GHVDHGKTTLT A+T V D EE RGITI I
Sbjct: 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIG 51
Query: 100 HVE-----------YSTN------------TRHYAHTDCPGHADYIKNMISGASQMDGAI 136
+ YST+ R + D PGH + M++GAS MDGAI
Sbjct: 52 FADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAI 111
Query: 137 VVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVD--------REIMELVELEVR 187
+V+AA+E PQTREHL+ + IG N+++ NK +LVD R+I E +E
Sbjct: 112 LVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE---- 167
Query: 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFIL 247
G +N P + SAL +I L+ A++ IP P RD P +
Sbjct: 168 ------GTVAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKM 211
Query: 248 PIDNAIGV--PGR------GSVCIGTIKQGTIKRNDEAEL---LGFN-------SKFTCT 289
+ + V PG G V G+I QG +K DE E+ + + T
Sbjct: 212 LVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271
Query: 290 ISEIQVFQKKVSEARAGDNVGV 311
I +Q + V EA G VGV
Sbjct: 272 IVSLQAGGQFVEEAYPGGLVGV 293
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 143/314 (45%), Gaps = 67/314 (21%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA 99
K+ N+G +GHVDHGKTTLT A+T V D EE RGITI I
Sbjct: 6 KTRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIG 52
Query: 100 HVE-----------YSTNT------------RHYAHTDCPGHADYIKNMISGASQMDGAI 136
+ YST+ R + D PGH + M++GAS MDGAI
Sbjct: 53 FADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAI 112
Query: 137 VVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195
+V+AA+E PQTREHL+ + IG N+++ NK +LVD+E ++++ + G
Sbjct: 113 LVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIK--GT 170
Query: 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV 255
+N P + SAL +I L+ A+++ IP P RD P + + + V
Sbjct: 171 VAENAPIIPISALHGA----------NIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDV 220
Query: 256 --PGR------GSVCIGTIKQGTIKRNDEAEL---LGFN-------SKFTCTISEIQVFQ 297
PG G V G+I QG +K DE E+ + + T I +Q
Sbjct: 221 NKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGG 280
Query: 298 KKVSEARAGDNVGV 311
+ V EA G VG+
Sbjct: 281 QFVEEAYPGGLVGI 294
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 155/326 (47%), Gaps = 42/326 (12%)
Query: 36 DASSKSSLVHCNVGTIGHVDHGKTTLTAAIT---------------KVAAKIGKSKFITF 80
+ S+ +VH V GHVD GK+T+ I AA GK F
Sbjct: 170 EQSNPKPVVHLVV--TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYA 227
Query: 81 DQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVA 140
+D EE+ARG+T+++A + ++ + Y D PGH D+I MI+GAS D A++VV
Sbjct: 228 WLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVD 287
Query: 141 ASEGQMP-------QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELE--VRDVLT 191
+S+ QTREH L + +GI +VV VNK DL+ E++ V D L
Sbjct: 288 SSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLI 347
Query: 192 AY-GYDGDNTPFVFGSALLA---LQGDSSELGE----PSIHRLLDALDKHIPNPVRDITS 243
G+ N FV SA+ +Q DSS+L + P+ LL ALD+ +P P +
Sbjct: 348 KMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT---LLSALDQLVP-PEKPYRK 403
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISE-IQVFQKKVSE 302
P L ID+ P R G ++ G ++ N L +S+ + I+ +
Sbjct: 404 PLRLSIDDVYRSP-RSVTVTGRVEAGNVQVNQ--VLYDVSSQEDAYVKNVIRNSDPSSTW 460
Query: 303 ARAGDNVGVLLRNVKLKQIERGMLLA 328
A AGD V + L ++++ Q+ G +L+
Sbjct: 461 AVAGDTVTLQLADIEVNQLRPGDILS 486
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 127/270 (47%), Gaps = 57/270 (21%)
Query: 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV 101
S N+G +GHVDHGKT+LT A+T V DR EE RGI+I + +
Sbjct: 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYA 51
Query: 102 E-----------YSTNTR------------HYAHTDCPGHADYIKNMISGASQMDGAIVV 138
+ Y+T R + D PGH + M+SGAS MDGAI+V
Sbjct: 52 DCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILV 111
Query: 139 VAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197
+AA+E PQT+EHL+ + +GID +++ NK DLVD + E ++++ + G
Sbjct: 112 IAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV--KGTIA 169
Query: 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV-- 255
+N P + SA E +I LL A+ IP P RD + + + + +
Sbjct: 170 ENAPIIPISA----------HHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINK 219
Query: 256 PG------RGSVCIGTIKQGTIKRNDEAEL 279
PG +G V G I QG K DE E+
Sbjct: 220 PGTEIKDLKGGVLGGAIIQGVFKVGDEIEI 249
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 139/310 (44%), Gaps = 80/310 (25%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE-- 102
N+G +GHVDHGKTTL AIT + + EE RG+TI + + E
Sbjct: 9 EVNIGVVGHVDHGKTTLVQAITGIWT-------------SKHSEELKRGMTIKLGYAETN 55
Query: 103 ------------YSTNT--------------RHYAHTDCPGHADYIKNMISGASQMDGAI 136
Y T R + D PGH + M+SGA+ MDGAI
Sbjct: 56 IGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAI 115
Query: 137 VVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY-- 193
+VVAA+E PQTREH + IG+ N+++ NK D+V +E + L+ Y
Sbjct: 116 LVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE----------EALSQYRQ 165
Query: 194 ------GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITS-PFI 246
G +N P + SAL + DS L++ ++++I P RD++ P +
Sbjct: 166 IKQFTKGTWAENVPIIPVSALHKINIDS----------LIEGIEEYIKTPYRDLSQKPVM 215
Query: 247 LPIDN-AIGVPG------RGSVCIGTIKQGTIKRNDEAELL-GFNSKFTCTISEIQVFQK 298
L I + + PG +G V G+I QG K + E ++L G + +S +F
Sbjct: 216 LVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFT- 274
Query: 299 KVSEARAGDN 308
K+S R GD
Sbjct: 275 KISSIRFGDE 284
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 139/310 (44%), Gaps = 80/310 (25%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE-- 102
N+G +GHVDHGKTTL AIT + + EE RG+TI + + E
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGIWT-------------SKHSEELKRGMTIKLGYAETN 54
Query: 103 ------------YSTNT--------------RHYAHTDCPGHADYIKNMISGASQMDGAI 136
Y T R + D PGH + M+SGA+ MDGAI
Sbjct: 55 IGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAI 114
Query: 137 VVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY-- 193
+VVAA+E PQTREH + IG+ N+++ NK D+V +E + L+ Y
Sbjct: 115 LVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE----------EALSQYRQ 164
Query: 194 ------GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITS-PFI 246
G +N P + SAL + DS L++ ++++I P RD++ P +
Sbjct: 165 IKQFTKGTWAENVPIIPVSALHKINIDS----------LIEGIEEYIKTPYRDLSQKPVM 214
Query: 247 LPIDN-AIGVPG------RGSVCIGTIKQGTIKRNDEAELL-GFNSKFTCTISEIQVFQK 298
L I + + PG +G V G+I QG K + E ++L G + +S +F
Sbjct: 215 LVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFT- 273
Query: 299 KVSEARAGDN 308
K+S R GD
Sbjct: 274 KISSIRFGDE 283
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 155/345 (44%), Gaps = 58/345 (16%)
Query: 45 HCNVGTIGHVDHGKTTL---------------TAAITKVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVD GK+TL I + A + GK + +D EE
Sbjct: 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEE 102
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ +G T+ + + T R ++ D PGH Y+ NMI+GASQ D ++V++A G+
Sbjct: 103 REKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAG 162
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY--------- 193
QTREH +L++ GI+++VV +NK D + E E D L+ +
Sbjct: 163 FERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS 222
Query: 194 ----------GYDGDNTPFVFGSALLAL-QGDSSELGEPSIHRLLDALDKHIPNPVRDIT 242
Y G N S++ QG PS+ LD++ H+ R +
Sbjct: 223 KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG-------PSLLEYLDSM-THLE---RKVN 271
Query: 243 SPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSE 302
+PFI+PI A G++ G I+ G+IK+N ++ N T + +++S
Sbjct: 272 APFIMPI--ASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA-DEEISS 328
Query: 303 ARAGDNVGVLLRNVKLKQIERGMLL-AKADTLQMHNRYEAEIYLL 346
+ GD V + +R ++ G +L + + + R+ A+I +L
Sbjct: 329 SICGDQVRLRVRGDD-SDVQTGYVLTSTKNPVHATTRFIAQIAIL 372
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 136/322 (42%), Gaps = 83/322 (25%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA 99
KS N+G +GHVDHGKTTLT A+T V D EE RGITI I
Sbjct: 5 KSRQAEVNIGXVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIG 51
Query: 100 HVE-----------YSTN------------TRHYAHTDCPGHADYIKNMISGASQMDGAI 136
+ YST+ R + D PGH ++GAS DGAI
Sbjct: 52 FADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAI 111
Query: 137 VVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKADLVD--------REIMELVELEVR 187
+V+AA+E PQTREHL + IG N+++ NK +LVD R+I E +E
Sbjct: 112 LVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE---- 167
Query: 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSP--- 244
G +N P + SAL +I L+ A++ IP P RD P
Sbjct: 168 ------GTVAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKX 211
Query: 245 -FILPID-NAIGVPGR---GSVCIGTIKQGTIKRNDEAEL---LGFN-------SKFTCT 289
+ D N G P G V G+I QG +K DE E+ + + T
Sbjct: 212 LVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271
Query: 290 ISEIQVFQKKVSEARAGDNVGV 311
I +Q + V EA G VGV
Sbjct: 272 IVSLQAGGQFVEEAYPGGLVGV 293
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 140/285 (49%), Gaps = 43/285 (15%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV--AAKIGKSKF-ITFDQIDRAPEEKARGITI-NIAH 100
N+G +GHVDHGKTTL AIT + + K+G ++ I + + PE + +
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGS 67
Query: 101 VEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-QMPQTREHLLLSKQI 159
+ R + D PGH + M+SGA+ MDGAI+VVAA+E PQTREH + I
Sbjct: 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127
Query: 160 GIDNVVVYVNKADLVDREIMELVELEVRDVLTAY--------GYDGDNTPFVFGSALLAL 211
G+ N+++ NK D+V +E + L+ Y G +N P + SAL +
Sbjct: 128 GVKNLIIVQNKVDVVSKE----------EALSQYRQIKQFTKGTWAENVPIIPVSALHKI 177
Query: 212 QGDSSELGEPSIHRLLDALDKHIPNPVRDITS-PFILPIDN-AIGVPG------RGSVCI 263
DS L++ ++++I P RD++ P +L I + + PG +G V
Sbjct: 178 NIDS----------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIG 227
Query: 264 GTIKQGTIKRNDEAELL-GFNSKFTCTISEIQVFQKKVSEARAGD 307
G+I QG K + E ++L G + +S +F K+S R GD
Sbjct: 228 GSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFT-KISSIRFGD 271
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 139/292 (47%), Gaps = 49/292 (16%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV--------AAKIGKSKF-ITFDQIDRAPEEKARGIT 95
N+G +GHVDHGKTTL AIT + K+G ++ I + + PE +
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPS 67
Query: 96 I-NIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-QMPQTREHL 153
+ + R + D PGH + M+SGA+ MDGAI+VVAA+E PQTREH
Sbjct: 68 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 127
Query: 154 LLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY--------GYDGDNTPFVFG 205
+ IG+ N+++ NK D+V +E + L+ Y G +N P +
Sbjct: 128 VALGIIGVKNLIIVQNKVDVVSKE----------EALSQYRQIKQFTKGTWAENVPIIPV 177
Query: 206 SALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITS-PFILPIDN-AIGVPG------ 257
SAL + DS L++ ++++I P RD++ P +L I + + PG
Sbjct: 178 SALHKINIDS----------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNEL 227
Query: 258 RGSVCIGTIKQGTIKRNDEAELL-GFNSKFTCTISEIQVFQKKVSEARAGDN 308
+G V G+I QG K + E ++L G + +S +F K+S R GD
Sbjct: 228 KGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFT-KISSIRFGDE 278
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 153/337 (45%), Gaps = 43/337 (12%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQ---------------IDRAPEE 89
H NV IGHVD GK+T+ I + + K +++ +D EE
Sbjct: 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 76
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ +G T+ + + T +H+ D PGH ++ NMI GASQ D A++V++A +G+
Sbjct: 77 RDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETG 136
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADLV----DREIMELVELEVRDVLTAYGYD-G 197
QTREH +L+K G+ +++V +NK D E E + ++ L G++
Sbjct: 137 FEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPK 196
Query: 198 DNTPFVFGSAL----LALQGDSSE--LGEPSIHRLLDALDKHIPNPVRDITSPFILPIDN 251
+ F+ S L L Q D +G P I L ++PN R + P LPI +
Sbjct: 197 KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-----DNLPNFNRSVDGPIRLPIVD 251
Query: 252 AIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGV 311
G+V +G ++ G+I + +L+ +K + I + G+N+ +
Sbjct: 252 KYK--DMGTVVLGKLESGSIFKGQ--QLVMMPNKHNVEVLGILSDDTETDFVAPGENLKI 307
Query: 312 LLRNVKLKQIERGMLLAKADTLQMHNR-YEAEIYLLS 347
L+ ++ ++I G +L L R ++ +I ++
Sbjct: 308 RLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIE 344
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 163/357 (45%), Gaps = 60/357 (16%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTA---------------AITKVAAKIGKSKFITFDQID 84
KS+L H + +GHVD GK+TL + + + +GKS F +D
Sbjct: 28 KSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMD 87
Query: 85 RAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG 144
+ EE+ RG+T++I +ST+ ++ D PGH D++ N I G SQ D AI+ V S
Sbjct: 88 QTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147
Query: 145 QMP-------QTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEVRDVLTAYGY 195
QT+EH+LL+ +GI N+++ +NK D VD ++ E ++ ++ L G+
Sbjct: 148 AFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 207
Query: 196 DGDNTPFVFGSALLALQGD-------SSELGE----PSIHRLLDALDKHIPNPVRDIT-- 242
DN +V + G+ + E+ + P++ L+ I I
Sbjct: 208 FEDNINWV---PISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKD 264
Query: 243 SPFILPIDNAIGVPGRG-----SVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ 297
PF+ + I P + ++ G ++ G+I+ + L + S+ +C + +IQV
Sbjct: 265 DPFLFSVLEII--PSKKTSNDLALVSGKLESGSIQPGE--SLTIYPSEQSCIVDKIQVGS 320
Query: 298 KK--------VSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLL 346
++ A GD V + LR + I+ G L A D +H+ A+ ++L
Sbjct: 321 QQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS---AQCFVL 374
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 164/355 (46%), Gaps = 56/355 (15%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTA---------------AITKVAAKIGKSKFITFDQID 84
KS+L H + +GHVD GK+TL + + + +GKS F +D
Sbjct: 162 KSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMD 221
Query: 85 RAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG 144
+ EE+ RG+T++I +ST+ ++ D PGH D++ N I G SQ D AI+ V S
Sbjct: 222 QTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281
Query: 145 QMP-------QTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEVRDVLTAYGY 195
QT+EH+LL+ +GI N+++ +NK D VD ++ E ++ ++ L G+
Sbjct: 282 AFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 341
Query: 196 DGDNTPFV-----FGSALLALQGDSSELGE----PSIHRLLDALDKHIPNPVRDIT--SP 244
DN +V G + ++ + E+ + P++ L+ I I P
Sbjct: 342 FEDNINWVPISGFSGEGVYKIEY-TDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400
Query: 245 FILPIDNAIGVPGRG-----SVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQV---- 295
F+ + I P + ++ G ++ G+I+ + L + S+ +C + +IQV
Sbjct: 401 FLFSVLEII--PSKKTSNDLALVSGKLESGSIQPGE--SLTIYPSEQSCIVDKIQVGSQQ 456
Query: 296 ----FQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLL 346
++ A GD V + LR + I+ G L A D +H+ A+ ++L
Sbjct: 457 GQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS---AQCFVL 508
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 159/357 (44%), Gaps = 60/357 (16%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLTA---------------AITKVAAKIGKSKFITFDQID 84
KS+L H + +GHVD GK+TL + + + GKS F D
Sbjct: 28 KSALPHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXD 87
Query: 85 RAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG 144
+ EE+ RG+T++I +ST+ ++ D PGH D++ N I G SQ D AI+ V S
Sbjct: 88 QTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTN 147
Query: 145 QMP-------QTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEVRDVLTAYGY 195
QT+EH LL+ +GI N+++ NK D VD ++ E ++ ++ L G+
Sbjct: 148 AFESGFDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGF 207
Query: 196 DGDNTPFVFGSALLALQGD-------SSELGE----PSIHRLLDALDKHIPNPVRDIT-- 242
DN +V + G+ + E+ + P++ L+ I I
Sbjct: 208 FEDNINWV---PISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKD 264
Query: 243 SPFILPIDNAIGVPGRG-----SVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ 297
PF+ + I P + ++ G ++ G+I+ + L + S+ +C + +IQV
Sbjct: 265 DPFLFSVLEII--PSKKTSNDLALVSGKLESGSIQPGE--SLTIYPSEQSCIVDKIQVGS 320
Query: 298 KK--------VSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLL 346
++ A GD V + LR + I+ G L A D +H+ A+ ++L
Sbjct: 321 QQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS---AQCFVL 374
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 144/326 (44%), Gaps = 47/326 (14%)
Query: 50 TIGHVDHGKTTLTA---------------AITKVAAKIGKSKFITFDQIDRA------PE 88
T G+VD GK+TL AIT+ + K G T D +D A
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGT----TGDDVDLALLVDGLQA 84
Query: 89 EKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQ 148
E+ +GITI++A+ +ST R + D PGH Y +N +GAS D AI++V A G Q
Sbjct: 85 EREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQ 144
Query: 149 TREHLLLSKQIGIDNVVVYVNKADL--VDREIMELVELEVRDVLTAYGYDGDNTPFVFGS 206
TR H ++ +GI ++VV +NK DL D + E ++ + + FV S
Sbjct: 145 TRRHSYIASLLGIKHIVVAINKXDLNGFDERVFESIKADYLKFAEGIAFKPTTXAFVPXS 204
Query: 207 ALLALQGD--------SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGR 258
AL+GD S S+ +L+ ++ D+ P + N + R
Sbjct: 205 ---ALKGDNVVNKSERSPWYAGQSLXEILETVEIASDRNYTDLRFP--VQYVNRPNLNFR 259
Query: 259 GSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL 318
G GT+ G + + DE +L S + + I F+ ++ +A G V L
Sbjct: 260 G--FAGTLASGIVHKGDEIVVL--PSGKSSRVKSIVTFEGELEQAGPGQ--AVTLTXEDE 313
Query: 319 KQIERGMLLAKADTL-QMHNRYEAEI 343
I RG LL AD + Q+ + ++A +
Sbjct: 314 IDISRGDLLVHADNVPQVSDAFDAXL 339
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 31/280 (11%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEY- 103
N I HVDHGK+TL + + I + + D +D E+ RGIT+ + V
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDV---ERERGITVKMQAVRMF 64
Query: 104 ----STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI 159
NT D PGH D+ + + +GA++++ AS+G QT + K +
Sbjct: 65 YKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW--KAV 122
Query: 160 GIDNVVVYV-NKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSEL 218
D V++ V NK DL ++ + V+ ++ +VL G D + A+LA S++
Sbjct: 123 EQDLVIIPVINKIDLPSADV-DRVKKQIEEVL---GLDPEE-------AILA----SAKE 167
Query: 219 GEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAE 278
G I +L+A+ IP P D P I ++ P RG+V I G +K D+
Sbjct: 168 G-IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226
Query: 279 LLGFNSKFTCTISEIQVFQ-KKVSEARAGDNVGVLLRNVK 317
L+ ++ T Q + K + AGD VG + ++K
Sbjct: 227 LMSTGKEYEVTEVGAQTPKMTKFDKLSAGD-VGYIAASIK 265
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQ----IDRAPEEKARGITINIAHVE 102
N+G + HVD GKTTLT ++ + I ++ + D+ D E+ RGITI
Sbjct: 4 NIGVLAHVDAGKTTLTESLLYNSGAI--TELGSVDKGTTRTDNTLLERQRGITIQTGITS 61
Query: 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGID 162
+ D PGH D++ + S +DGAI++++A +G QTR +++GI
Sbjct: 62 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 121
Query: 163 NVVVYVNKAD 172
+ ++NK D
Sbjct: 122 T-IFFINKID 130
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
V +GHVDHGKTTL AI + E++A GIT +I + + N
Sbjct: 11 VTIMGHVDHGKTTLLDAIRH----------------SKVTEQEAGGITQHIGAYQVTVND 54
Query: 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVY 167
+ D PGH + GA D I+VVAA +G MPQT E + +K + ++V
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVA 113
Query: 168 VNKADL----VDREIMELVE 183
+NK D DR + EL+E
Sbjct: 114 INKMDKPEANPDRVMQELME 133
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 31/280 (11%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEY- 103
N I HVDHGK+TL + + I + + D +D E+ RGIT+ V
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDV---ERERGITVKXQAVRXF 64
Query: 104 ----STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI 159
NT D PGH D+ + + +GA++++ AS+G QT + K +
Sbjct: 65 YKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW--KAV 122
Query: 160 GIDNVVVYV-NKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSEL 218
D V++ V NK DL ++ + V+ ++ +VL G D + A+LA S++
Sbjct: 123 EQDLVIIPVINKIDLPSADV-DRVKKQIEEVL---GLDPEE-------AILA----SAKE 167
Query: 219 GEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAE 278
G I +L+A+ IP P D P I ++ P RG+V I G +K D+
Sbjct: 168 G-IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIX 226
Query: 279 LLGFNSKFTCTISEIQVFQK-KVSEARAGDNVGVLLRNVK 317
L ++ T Q + K + AGD VG + ++K
Sbjct: 227 LXSTGKEYEVTEVGAQTPKXTKFDKLSAGD-VGYIAASIK 265
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 47 NVGTIGHVDHGKTTLTAAITK-----VAAKIGKSKFITFDQIDRAPEEKARGITI----- 96
N+ I HVDHGK+TLT ++ + AAK G+++F D +E+ RGITI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF-----TDTRKDEQERGITIKSTAI 75
Query: 97 ---------NIAHVEYSTNTRHYAHT--DCPGHADYIKNMISGASQMDGAIVVVAASEGQ 145
++ ++ T+ + D PGH D+ + + DGA+VVV EG
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 146 MPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMEL 181
QT L + I VVV +NK VDR ++EL
Sbjct: 136 CVQTETVLRQALGERIKPVVV-INK---VDRALLEL 167
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 47 NVGTIGHVDHGKTTLTAAITK-----VAAKIGKSKFITFDQIDRAPEEKARGITI----- 96
N+ I HVDHGK+TLT ++ + AAK G+++F D +E+ RGITI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF-----TDTRKDEQERGITIKSTAI 75
Query: 97 ---------NIAHVEYSTNTRHYAHT--DCPGHADYIKNMISGASQMDGAIVVVAASEGQ 145
++ ++ T+ + D PGH D+ + + DGA+VVV EG
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 146 MPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMEL 181
QT L + I VVV +NK VDR ++EL
Sbjct: 136 CVQTETVLRQALGERIKPVVV-INK---VDRALLEL 167
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV--EYS 104
N I H+DHGK+TL+ I ++ + + + +D E+ RGITI V +Y
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYK 64
Query: 105 TN---TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI 161
+ T D PGH D+ + + +GA++VV A +G QT + + ++ +
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 162 DNVVVYVNKADL-------VDREIMELVELEVRDVLTAYGYDG 197
+ VV +NK DL V EI ++V ++ D + G
Sbjct: 125 E-VVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTG 166
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV--EYS 104
N I H+DHGK+TL+ I ++ + + + +D E+ RGITI V +Y
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYK 64
Query: 105 TN---TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI 161
+ T D PGH D+ + + +GA++VV A +G QT + + ++ +
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 162 DNVVVYVNKADL-------VDREIMELVELEVRDVL 190
+ VV +NK DL V EI ++V ++ D +
Sbjct: 125 E-VVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE- 102
N+G HVD GKTT T + T V K+G+ D +E+ RGITI A V
Sbjct: 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEV-HDGAATTDWMVQEQERGITITSAAVTT 73
Query: 103 -YSTNTRHYAH-----TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLS 156
+ + Y + D PGH D+ + +DGA+VV + G PQ+ +
Sbjct: 74 FWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133
Query: 157 KQIGIDNVVVYVNKADLVDREIMELVE 183
+ G+ +VYVNK D + +VE
Sbjct: 134 NKYGVPR-IVYVNKMDRQGANFLRVVE 159
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEA 303
P + ID+A V G+G V +G +KQG K D+ ++ + I IQ + A
Sbjct: 192 PARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIE--IRSIQSHDVDIDSA 249
Query: 304 RAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSK 348
AG VG L+NV+ K IERG +++ + + E + +K
Sbjct: 250 PAGTRVGXRLKNVQAKDIERGFIISDKEIVTTDYTLECTVSKFTK 294
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 48 VGTIGHVDHGKTTLTAAI--TKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105
V +GHVDHGKT+L I TKVA+ +A GIT +I T
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASG------------------EAGGITQHIGAYHVET 48
Query: 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHL 153
D PGHA + GA D ++VVAA +G MPQT E +
Sbjct: 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 51 IGHVDHGKTTLTAAI------TKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
I H D GKTTLT + ++A + K D E+ RGI++ + +++
Sbjct: 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP 96
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
R D PGH D+ ++ + +D A+VV+ A++G QTR+ L+ ++ V
Sbjct: 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRMRATPV 155
Query: 165 VVYVNKADLVDREIMELVEL 184
+ +VNK +DRE + +++
Sbjct: 156 MTFVNK---MDREALHPLDV 172
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G I H+D GKTT T I +I K Q+D +E+ RGITI A +
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGA+ V+ A G PQT + G+
Sbjct: 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 165 VVYVNKAD 172
+V+VNK D
Sbjct: 131 IVFVNKMD 138
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 51 IGHVDHGKTTLTAAI------TKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
I H D GKTTLT + ++A I K D EK RGI++ + ++
Sbjct: 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTSVXQFP 78
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGHAD+ ++ + +D A+ V+ A++G P+T + L ++ +
Sbjct: 79 YKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIK-LXEVCRLRHTPI 137
Query: 165 VVYVNKADLVDREIMELVELEVRDVL 190
++NK D R +EL++ E+ +L
Sbjct: 138 XTFINKXDRDTRPSIELLD-EIESIL 162
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G + H+D GKTT T I +I K Q+D +E+ RGITI A +
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGA+ V+ A G PQT + G+
Sbjct: 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 165 VVYVNKAD 172
+V+VNK D
Sbjct: 131 IVFVNKMD 138
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I
Region Fitted Into The Cryo-Em Map Of The
Eef2.80s.Alf4.Gdp Complex
Length = 46
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 54 VDHGKTTLTAAITKV-AAKIGKSKFITFDQIDRAPEEKARGITIN 97
VDHGKTTLTAA+T V AA+ + + ID+APEE+ARGITIN
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITIN 45
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G I H+D GKTT T I +I K Q+D +E+ RGITI A +
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D + +DGA+ V+ A G PQT + G+
Sbjct: 72 WEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 165 VVYVNKAD 172
+V+VNK D
Sbjct: 131 IVFVNKMD 138
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHV 101
N+G H+D GKTT T I T V KIG+ T D ++ +E+ RGITI A
Sbjct: 11 NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWME---QEQERGITITSAAT 67
Query: 102 E--YSTNTRHYAH-----TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLL 154
+S + Y D PGH D+ + +DGA++V A G PQ+
Sbjct: 68 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 127
Query: 155 LSKQIGIDNVVVYVNKADLVDREIMELV 182
+ + + + +VNK D + +++V
Sbjct: 128 QANKYKVPR-IAFVNKMDRMGANFLKVV 154
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHV 101
N+G H+D GKTT T I T V KIG+ T D ++ +E+ RGITI A
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWME---QEQERGITITSAAT 68
Query: 102 E--YSTNTRHYAH-----TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLL 154
+S + Y D PGH D+ + +DGA++V A G PQ+
Sbjct: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
Query: 155 LSKQIGIDNVVVYVNKADLVDREIMELV 182
+ + + + +VNK D + +++V
Sbjct: 129 QANKYKVPR-IAFVNKMDRMGANFLKVV 155
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G + H+D GKTT T I +I K Q+D +E+ RGITI A +
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D + +DGA+ V+ A G PQT + G+
Sbjct: 72 WEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 165 VVYVNKAD 172
+V+VNK D
Sbjct: 131 IVFVNKMD 138
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFI--TFDQIDRAPEEKARGITINIAHVEYS 104
N+ H+D GKTT T I +I K + +D +E+ RGITI A
Sbjct: 14 NIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 165 VVYVNKAD 172
+ + NK D
Sbjct: 133 IAFANKMD 140
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 24/27 (88%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAK 71
H NVGTIGHVDHGKTTLTAAIT V AK
Sbjct: 4 HVNVGTIGHVDHGKTTLTAAITTVLAK 30
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 35/231 (15%)
Query: 48 VGTIGHVDHGKTTLTAAI--TKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105
V +GHVDHGKTTL + T+VAA +A GIT +I S
Sbjct: 7 VTIMGHVDHGKTTLLDKLRKTQVAAM------------------EAGGITQHIGAFLVSL 48
Query: 106 NT-RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
+ D PGHA + G D I+VVAA +G M QT E + +K + +
Sbjct: 49 PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHV-PI 107
Query: 165 VVYVNKADLVDREIMEL-VELEVRDVLTAYGYDGDNTPFVFGSALLALQGDS-SELGEPS 222
V+ +NK D + + ++ EL DV+ Y GD V + AL G++ L E +
Sbjct: 108 VLAINKCDKAEADPEKVKKELLAYDVVCE-DYGGD----VQAVHVSALTGENMMALAEAT 162
Query: 223 IHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKR 273
I L + L+ +P + I + GRG V I++GT+++
Sbjct: 163 I-ALAEMLELK-ADPTGAVEGTVIESFTDK----GRGPVTTAIIQRGTLRK 207
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 51 IGHVDHGKTTLTAAITKVAAKIGKSKFI------TFDQIDRAPEEKARGITINIAHVEYS 104
I H D GKTT+T + I + + + D EK RGI+I + +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP 78
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
+ D PGH D+ ++ + +D ++V+ A++G +TR+ L+ ++ +
Sbjct: 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRK-LMEVTRLRDTPI 137
Query: 165 VVYVNKADLVDREIMELVE 183
+ ++NK D R+ MEL++
Sbjct: 138 LTFMNKLDRDIRDPMELLD 156
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 51 IGHVDHGKTTLTAAITKVAAKIGKSKFI------TFDQIDRAPEEKARGITINIAHVEYS 104
I H D GKTT+T + I + + + D EK RGI+I + +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP 78
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
+ D PGH D+ ++ + +D ++V+ A++G +TR+ L+ ++ +
Sbjct: 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRK-LMEVTRLRDTPI 137
Query: 165 VVYVNKADLVDREIMELVE 183
+ ++NK D R+ MEL++
Sbjct: 138 LTFMNKLDRDIRDPMELLD 156
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAIT-KVAAKIGKSKFIT-FDQIDRAPEEKARGITINIAHVEYS 104
V +GH GKTTLT A+ K AK + + D PE K T+
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 70
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PG+ D++ + D A+V V+A G T +++++G+ +
Sbjct: 71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 165 VVYVNKAD 172
VV V K D
Sbjct: 131 VV-VTKLD 137
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 80 FDQIDRAPEEKARGITINIAHVE 102
+ ID+APEE+ARGITIN AHVE
Sbjct: 13 YGDIDKAPEERARGITINTAHVE 35
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
N+G H+D GKTT T I +I + D INI
Sbjct: 9 NIGIAAHIDAGKTTTTERILYYTGRIAVTTCFWKDH------------RINI-------- 48
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVV 166
D PGH D+ + +DGAIVV +S+G PQ+ +++ + +
Sbjct: 49 ------IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IA 101
Query: 167 YVNKAD 172
+ NK D
Sbjct: 102 FANKMD 107
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 48 VGTIGHVDHGKTTLTAAI--TKVAAKI--GKSKFITFDQIDRAPEEKARGITIN-IAHVE 102
V +GHVDHGKTTL I + VA++ G ++ I +I P + GI + +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI---PXDVIEGICGDFLKKFS 64
Query: 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHL 153
D PGH + G + D AI++V +EG PQT+E L
Sbjct: 65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 48 VGTIGHVDHGKTTLTAAI--TKVAAKI--GKSKFITFDQIDRAPEEKARGITIN-IAHVE 102
V +GHVDHGKTTL I + VA++ G ++ I +I P + GI + +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI---PMDVIEGICGDFLKKFS 64
Query: 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHL 153
D PGH + G + D AI++V +EG PQT+E L
Sbjct: 65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105
+VG +G+ + GK++L AA+T+ KI F T ++ N+ VE S
Sbjct: 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT--------------LSPNLGVVEVSE 203
Query: 106 NTRHYAHTDCPGHADYIKNMISGASQMDG 134
R + D PG +I GAS+ G
Sbjct: 204 EER-FTLADIPG-------IIEGASEGKG 224
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
++G +G+ + GKT+L ++T + K+ F T +P K I IN + +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM-----SP--KRYAIPINNRKIML-VD 232
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAA--SEGQMPQT-REHLLLSKQIGIDN 163
T + P D +S A D I+V+ + SE + +T + + ++IG+
Sbjct: 233 TVSFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG 292
Query: 164 --VVVYVNKADLVDREI---MELVE 183
++V +NK D ++ ++ ++LVE
Sbjct: 293 KPILVTLNKIDKINGDLYKKLDLVE 317
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 242 TSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVS 301
++PFI+PI A G++ G I+ G+IK+N ++ N T + +++S
Sbjct: 5 SAPFIMPI--ASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA-DEEIS 61
Query: 302 EARAGDNVGVLLRNVKLKQIERGMLLAKA-DTLQMHNRYEAEIYLL 346
+ GD V + +R ++ G +L + + R+ A+I +L
Sbjct: 62 SSICGDQVRLRVRGDD-SDVQTGYVLTSTKNPVHATTRFIAQIAIL 106
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
++G +G+ + GKT+L ++T + K+ F T +P K I IN + +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM-----SP--KRYAIPINNRKI-MLVD 232
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAA--SEGQMPQT-REHLLLSKQIGIDN 163
T + P D +S A D I+V+ + SE + +T + + ++IG+
Sbjct: 233 TVPFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG 292
Query: 164 --VVVYVNKADLVDREI---MELVE 183
++V +NK D ++ ++ ++LVE
Sbjct: 293 KPILVTLNKIDKINGDLYKKLDLVE 317
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
++G +G+ + GKT+L ++T + K+ F T +P K I IN + +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM-----SP--KRYAIPINNRKI-MLVD 232
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAA--SEGQMPQT-REHLLLSKQIGIDN 163
T + P D +S A D I+V+ + SE + +T + + ++IG+
Sbjct: 233 TVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG 292
Query: 164 --VVVYVNKADLVDREI---MELVE 183
++V +NK D ++ ++ ++LVE
Sbjct: 293 KPILVTLNKIDKINGDLYKKLDLVE 317
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 175 DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ-GDSSELGEPSIHRLLDALD 231
D + E E V+ +L AYGY TP V + L G+ +++ E ++ +DAL+
Sbjct: 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN 102
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 34/149 (22%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H N+ T+ + G+ L K ++ K D+++ P+E G+ N+ H +
Sbjct: 19 HSNMVTVEDEETGERILCKLRGKF--RLQNLKIYVGDRVEYTPDETGSGVIENVLHRKNL 76
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREH-----LLLSKQI 159
H A+ +D I+VV +MP+T + L+L+++
Sbjct: 77 LTKPHVAN-------------------VDQVILVVTV---KMPETSTYIIDKFLVLAEKN 114
Query: 160 GIDNVVVYVNKADLVD----REIMELVEL 184
++ V+V +NK DL D R++ EL E+
Sbjct: 115 ELETVMV-INKMDLYDEDDLRKVRELEEI 142
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 92 RGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123
+G I + +V+ N++HYAH G+ +Y+K
Sbjct: 866 KGYAILMKYVKAHLNSKHYAHNIIYGYENYLK 897
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,332,257
Number of Sequences: 62578
Number of extensions: 543975
Number of successful extensions: 1519
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 102
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)