Query psy3124
Match_columns 463
No_of_seqs 334 out of 3305
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:02:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0460|consensus 100.0 9.3E-84 2E-88 601.4 29.8 397 34-431 43-440 (449)
2 COG0050 TufB GTPases - transla 100.0 3E-80 6.5E-85 567.9 35.7 391 35-428 2-393 (394)
3 COG5256 TEF1 Translation elong 100.0 1.5E-76 3.3E-81 571.7 41.2 378 40-428 2-427 (428)
4 PRK12736 elongation factor Tu; 100.0 1E-73 2.2E-78 579.8 47.9 391 35-428 2-393 (394)
5 TIGR00485 EF-Tu translation el 100.0 7.1E-73 1.5E-77 574.4 47.9 391 35-428 2-393 (394)
6 PLN03127 Elongation factor Tu; 100.0 5.3E-73 1.2E-77 579.0 47.1 394 34-428 50-446 (447)
7 PRK12735 elongation factor Tu; 100.0 1.2E-72 2.6E-77 572.2 49.2 391 35-428 2-395 (396)
8 PRK00049 elongation factor Tu; 100.0 5.9E-72 1.3E-76 566.7 48.7 391 35-428 2-395 (396)
9 PLN03126 Elongation factor Tu; 100.0 9.3E-72 2E-76 572.3 46.9 390 37-428 73-477 (478)
10 CHL00071 tufA elongation facto 100.0 1E-70 2.3E-75 560.3 46.6 394 34-429 1-409 (409)
11 PLN00043 elongation factor 1-a 100.0 1.1E-70 2.3E-75 562.6 45.8 379 41-430 3-432 (447)
12 PTZ00141 elongation factor 1- 100.0 3.4E-70 7.4E-75 559.4 46.4 382 40-432 2-434 (446)
13 PRK12317 elongation factor 1-a 100.0 3.3E-67 7.1E-72 539.0 43.3 379 41-430 2-423 (425)
14 TIGR00483 EF-1_alpha translati 100.0 3.4E-66 7.4E-71 531.3 44.4 379 40-429 2-424 (426)
15 PTZ00327 eukaryotic translatio 100.0 1.2E-61 2.7E-66 494.0 41.3 352 41-426 30-451 (460)
16 KOG0458|consensus 100.0 2.7E-62 5.8E-67 488.0 35.4 378 40-428 172-602 (603)
17 PRK05124 cysN sulfate adenylyl 100.0 3.4E-61 7.3E-66 496.6 40.6 377 37-428 19-438 (474)
18 TIGR02034 CysN sulfate adenyly 100.0 6.3E-61 1.4E-65 487.7 40.8 363 46-424 1-406 (406)
19 COG5258 GTPBP1 GTPase [General 100.0 8.6E-62 1.9E-66 460.3 31.3 364 42-427 114-526 (527)
20 COG2895 CysN GTPases - Sulfate 100.0 6E-61 1.3E-65 451.4 35.9 373 42-432 3-420 (431)
21 PRK05506 bifunctional sulfate 100.0 7.6E-60 1.7E-64 505.3 45.0 405 41-463 20-467 (632)
22 KOG0459|consensus 100.0 6.4E-60 1.4E-64 450.4 28.1 375 42-429 76-501 (501)
23 PRK10512 selenocysteinyl-tRNA- 100.0 3.9E-58 8.5E-63 485.4 41.2 340 47-432 2-345 (614)
24 KOG0463|consensus 100.0 3.5E-60 7.6E-65 447.7 22.2 388 43-455 131-571 (641)
25 PRK04000 translation initiatio 100.0 1.9E-57 4.1E-62 462.1 41.5 350 40-424 4-410 (411)
26 TIGR03680 eif2g_arch translati 100.0 2E-57 4.4E-62 462.3 41.6 347 43-424 2-405 (406)
27 TIGR00475 selB selenocysteine- 100.0 1.2E-53 2.6E-58 450.2 42.5 336 46-427 1-338 (581)
28 COG3276 SelB Selenocysteine-sp 100.0 1.8E-54 3.9E-59 421.6 32.1 342 46-432 1-344 (447)
29 KOG1143|consensus 100.0 8.4E-52 1.8E-56 390.6 24.5 368 44-432 166-587 (591)
30 COG5257 GCD11 Translation init 100.0 3.8E-48 8.1E-53 360.4 32.6 349 43-426 8-413 (415)
31 TIGR01394 TypA_BipA GTP-bindin 100.0 1.8E-42 3.9E-47 364.6 33.4 279 45-332 1-289 (594)
32 COG1217 TypA Predicted membran 100.0 1.7E-40 3.6E-45 322.5 25.9 282 43-333 3-294 (603)
33 PRK10218 GTP-binding protein; 100.0 1.1E-39 2.4E-44 342.9 32.3 279 44-331 4-292 (607)
34 KOG0461|consensus 100.0 1.6E-40 3.4E-45 311.5 21.6 363 44-430 6-410 (522)
35 KOG0462|consensus 100.0 6.2E-40 1.3E-44 324.4 22.0 270 43-331 58-332 (650)
36 PRK05433 GTP-binding protein L 100.0 4.9E-38 1.1E-42 332.2 30.3 268 43-331 5-281 (600)
37 TIGR01393 lepA GTP-binding pro 100.0 6.9E-38 1.5E-42 330.7 30.9 267 44-331 2-277 (595)
38 COG0481 LepA Membrane GTPase L 100.0 4.3E-38 9.3E-43 306.7 23.4 271 42-331 6-283 (603)
39 cd01884 EF_Tu EF-Tu subfamily. 100.0 2.8E-35 6.1E-40 270.0 22.6 192 44-237 1-195 (195)
40 PRK07560 elongation factor EF- 100.0 3.7E-34 7.9E-39 311.0 26.2 280 43-331 18-375 (731)
41 PRK00007 elongation factor G; 100.0 9.9E-34 2.2E-38 306.0 29.2 269 44-331 9-394 (693)
42 PRK00741 prfC peptide chain re 100.0 1.7E-33 3.6E-38 293.1 28.9 271 43-331 8-380 (526)
43 COG0480 FusA Translation elong 100.0 1.4E-33 3E-38 298.3 27.2 271 42-331 7-392 (697)
44 PRK12739 elongation factor G; 100.0 2.4E-33 5.3E-38 303.1 28.2 269 44-331 7-391 (691)
45 TIGR00503 prfC peptide chain r 100.0 4.5E-33 9.7E-38 289.9 28.0 271 43-331 9-381 (527)
46 KOG0466|consensus 100.0 4.2E-35 9E-40 271.0 10.6 349 42-426 35-458 (466)
47 PRK05306 infB translation init 100.0 1.5E-32 3.2E-37 294.9 28.2 248 43-329 288-542 (787)
48 COG4108 PrfC Peptide chain rel 100.0 4.5E-33 9.8E-38 269.6 21.3 272 44-332 11-383 (528)
49 TIGR00484 EF-G translation elo 100.0 1.6E-32 3.5E-37 296.9 27.9 269 44-331 9-392 (689)
50 TIGR00487 IF-2 translation ini 100.0 3.6E-32 7.8E-37 285.8 29.4 245 44-328 86-339 (587)
51 KOG0052|consensus 100.0 5.5E-34 1.2E-38 275.2 10.0 344 40-445 2-388 (391)
52 PF00009 GTP_EFTU: Elongation 100.0 1E-32 2.2E-37 252.7 18.0 182 43-236 1-188 (188)
53 PRK13351 elongation factor G; 100.0 2E-31 4.3E-36 289.1 28.1 269 44-331 7-390 (687)
54 TIGR00490 aEF-2 translation el 100.0 3.1E-31 6.8E-36 287.4 24.2 280 43-331 17-374 (720)
55 CHL00189 infB translation init 100.0 1.6E-30 3.5E-35 276.7 27.2 248 43-328 242-499 (742)
56 PRK12740 elongation factor G; 100.0 2.6E-30 5.5E-35 280.0 26.7 262 51-331 1-373 (668)
57 PRK04004 translation initiatio 100.0 5.8E-30 1.3E-34 269.8 28.6 255 44-327 5-325 (586)
58 TIGR00491 aIF-2 translation in 100.0 1.1E-29 2.4E-34 266.5 27.5 254 45-327 4-323 (590)
59 PLN00116 translation elongatio 100.0 8E-30 1.7E-34 280.2 26.5 283 42-331 16-471 (843)
60 cd01883 EF1_alpha Eukaryotic e 100.0 1.2E-29 2.6E-34 237.8 19.3 184 47-233 1-215 (219)
61 KOG1145|consensus 100.0 2.2E-29 4.8E-34 249.5 20.7 247 44-328 152-405 (683)
62 COG0532 InfB Translation initi 100.0 5.3E-29 1.1E-33 249.6 22.8 232 44-311 4-245 (509)
63 PTZ00416 elongation factor 2; 100.0 1.2E-28 2.6E-33 270.5 27.5 285 43-331 17-467 (836)
64 KOG0465|consensus 100.0 4.5E-30 9.8E-35 257.1 13.9 268 43-330 37-420 (721)
65 cd04166 CysN_ATPS CysN_ATPS su 100.0 1.5E-28 3.3E-33 228.6 20.4 185 47-237 1-207 (208)
66 cd04165 GTPBP1_like GTPBP1-lik 100.0 1.1E-27 2.4E-32 224.3 17.9 177 47-237 1-224 (224)
67 cd01888 eIF2_gamma eIF2-gamma 100.0 2.7E-27 5.8E-32 219.4 18.1 169 46-239 1-203 (203)
68 cd01885 EF2 EF2 (for archaea a 99.9 6.5E-27 1.4E-31 218.2 18.3 186 46-237 1-222 (222)
69 PRK14845 translation initiatio 99.9 2.2E-25 4.8E-30 244.2 25.9 253 45-327 462-780 (1049)
70 cd01886 EF-G Elongation factor 99.9 5.5E-26 1.2E-30 218.6 17.0 127 47-175 1-130 (270)
71 cd01889 SelB_euk SelB subfamil 99.9 3.8E-25 8.2E-30 203.2 19.5 171 46-238 1-189 (192)
72 cd04168 TetM_like Tet(M)-like 99.9 2.7E-25 5.9E-30 210.1 18.2 178 47-237 1-237 (237)
73 cd01891 TypA_BipA TypA (tyrosi 99.9 9E-25 1.9E-29 201.1 20.1 191 45-237 2-194 (194)
74 cd04169 RF3 RF3 subfamily. Pe 99.9 8E-25 1.7E-29 210.4 18.9 130 45-175 2-137 (267)
75 KOG0464|consensus 99.9 2.8E-26 6E-31 220.2 5.8 270 44-331 36-419 (753)
76 cd04171 SelB SelB subfamily. 99.9 1.4E-23 3E-28 186.9 19.9 162 46-232 1-163 (164)
77 cd00881 GTP_translation_factor 99.9 1.8E-23 4E-28 190.6 19.1 180 47-237 1-189 (189)
78 cd04167 Snu114p Snu114p subfam 99.9 2.1E-23 4.6E-28 194.8 17.8 189 46-237 1-213 (213)
79 cd01890 LepA LepA subfamily. 99.9 5.7E-23 1.2E-27 186.1 18.0 174 46-237 1-179 (179)
80 KOG0469|consensus 99.9 2.4E-23 5.2E-28 204.2 14.4 283 37-327 11-470 (842)
81 cd04170 EF-G_bact Elongation f 99.9 2.9E-22 6.2E-27 193.8 17.1 127 47-175 1-130 (268)
82 KOG1144|consensus 99.9 2E-22 4.4E-27 205.3 13.4 217 42-285 472-740 (1064)
83 PF02421 FeoB_N: Ferrous iron 99.8 6.7E-21 1.4E-25 166.7 11.2 148 46-230 1-156 (156)
84 KOG0467|consensus 99.8 1.9E-19 4.1E-24 185.0 23.4 164 43-210 7-202 (887)
85 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 7.2E-20 1.6E-24 163.7 17.9 159 47-233 2-164 (168)
86 TIGR03594 GTPase_EngA ribosome 99.8 7.4E-20 1.6E-24 188.9 17.1 161 43-233 170-342 (429)
87 KOG0468|consensus 99.8 6.4E-19 1.4E-23 178.2 21.6 132 42-174 125-262 (971)
88 PRK00093 GTP-binding protein D 99.8 3.9E-19 8.6E-24 183.8 18.7 160 43-232 171-341 (435)
89 COG1160 Predicted GTPases [Gen 99.8 2.3E-19 5E-24 177.7 14.6 159 44-232 177-348 (444)
90 cd01895 EngA2 EngA2 subfamily. 99.8 1.5E-18 3.3E-23 155.3 16.8 158 45-232 2-172 (174)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.1E-19 8.8E-24 158.9 12.9 161 47-232 1-166 (167)
92 TIGR00436 era GTP-binding prot 99.8 3.6E-18 7.8E-23 165.2 17.4 156 47-236 2-165 (270)
93 cd01894 EngA1 EngA1 subfamily. 99.8 2.2E-18 4.7E-23 152.0 14.5 148 49-233 1-156 (157)
94 COG1159 Era GTPase [General fu 99.8 4.2E-18 9.2E-23 160.2 16.5 160 44-236 5-173 (298)
95 cd03693 EF1_alpha_II EF1_alpha 99.8 2.1E-18 4.6E-23 138.2 11.0 89 242-332 2-90 (91)
96 COG1160 Predicted GTPases [Gen 99.8 6.6E-18 1.4E-22 167.4 15.9 153 46-235 4-165 (444)
97 cd04154 Arl2 Arl2 subfamily. 99.8 6.7E-18 1.5E-22 152.3 14.6 156 43-232 12-172 (173)
98 PRK03003 GTP-binding protein D 99.8 1.1E-17 2.4E-22 174.1 17.9 161 44-234 210-381 (472)
99 PRK15494 era GTPase Era; Provi 99.8 1.4E-17 3.1E-22 165.7 17.8 176 43-252 50-239 (339)
100 TIGR03598 GTPase_YsxC ribosome 99.8 2.2E-17 4.7E-22 149.9 17.0 148 42-210 15-175 (179)
101 TIGR03594 GTPase_EngA ribosome 99.8 2.3E-17 5E-22 170.4 17.8 154 47-237 1-162 (429)
102 cd01864 Rab19 Rab19 subfamily. 99.8 3.8E-17 8.2E-22 146.0 16.5 155 45-232 3-163 (165)
103 PRK00089 era GTPase Era; Revie 99.7 6.4E-17 1.4E-21 158.4 18.7 159 45-236 5-172 (292)
104 PRK00454 engB GTP-binding prot 99.7 1.2E-16 2.5E-21 147.0 19.0 160 43-235 22-194 (196)
105 cd01898 Obg Obg subfamily. Th 99.7 3.4E-17 7.4E-22 146.7 14.6 152 47-232 2-168 (170)
106 cd03694 GTPBP_II Domain II of 99.7 1.5E-17 3.2E-22 132.1 10.6 85 245-329 1-87 (87)
107 PF03143 GTP_EFTU_D3: Elongati 99.7 1.3E-17 2.7E-22 135.8 10.3 91 333-428 2-99 (99)
108 cd01860 Rab5_related Rab5-rela 99.7 6.3E-17 1.4E-21 144.0 15.4 157 46-234 2-162 (163)
109 cd04145 M_R_Ras_like M-Ras/R-R 99.7 7.9E-17 1.7E-21 143.4 15.9 156 45-233 2-162 (164)
110 cd04157 Arl6 Arl6 subfamily. 99.7 3.8E-17 8.2E-22 145.2 13.8 154 47-232 1-161 (162)
111 cd01897 NOG NOG1 is a nucleola 99.7 8.7E-17 1.9E-21 143.9 16.0 152 46-233 1-166 (168)
112 cd04124 RabL2 RabL2 subfamily. 99.7 1.4E-16 2.9E-21 142.0 16.8 153 46-233 1-156 (161)
113 cd03698 eRF3_II_like eRF3_II_l 99.7 2.2E-17 4.9E-22 129.9 10.2 83 244-329 1-83 (83)
114 cd03697 EFTU_II EFTU_II: Elong 99.7 2.3E-17 5E-22 131.0 10.3 87 245-331 1-87 (87)
115 TIGR00231 small_GTP small GTP- 99.7 5.6E-17 1.2E-21 142.2 13.6 150 46-231 2-160 (161)
116 cd04106 Rab23_lke Rab23-like s 99.7 1.3E-16 2.7E-21 141.9 15.8 153 46-232 1-160 (162)
117 cd04151 Arl1 Arl1 subfamily. 99.7 6.7E-17 1.5E-21 143.4 14.0 152 47-232 1-157 (158)
118 cd01879 FeoB Ferrous iron tran 99.7 3.7E-17 7.9E-22 144.5 12.2 147 50-233 1-155 (158)
119 PRK09518 bifunctional cytidyla 99.7 1.1E-16 2.3E-21 174.4 17.8 162 44-235 449-621 (712)
120 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.9E-17 1.9E-21 141.6 14.2 146 46-233 2-155 (157)
121 PRK03003 GTP-binding protein D 99.7 2.1E-16 4.4E-21 164.6 18.8 155 45-236 38-200 (472)
122 cd04113 Rab4 Rab4 subfamily. 99.7 1.2E-16 2.5E-21 142.1 14.4 153 46-232 1-159 (161)
123 PRK15467 ethanolamine utilizat 99.7 7.4E-17 1.6E-21 143.4 13.0 141 47-235 3-147 (158)
124 cd03706 mtEFTU_III Domain III 99.7 1.2E-16 2.7E-21 128.7 13.0 92 335-427 2-93 (93)
125 cd04163 Era Era subfamily. Er 99.7 3.7E-16 7.9E-21 138.6 17.4 156 45-233 3-167 (168)
126 smart00175 RAB Rab subfamily o 99.7 2E-16 4.3E-21 140.7 15.2 155 46-234 1-161 (164)
127 COG0218 Predicted GTPase [Gene 99.7 4.4E-16 9.5E-21 139.2 17.2 162 42-234 21-196 (200)
128 cd00154 Rab Rab family. Rab G 99.7 2.7E-16 5.8E-21 138.3 15.7 154 46-231 1-158 (159)
129 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.4E-16 3.1E-21 143.8 14.3 154 45-232 15-173 (174)
130 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.7E-17 2.1E-21 142.2 12.8 152 47-232 1-157 (158)
131 PRK04213 GTP-binding protein; 99.7 5.1E-16 1.1E-20 143.5 17.8 158 44-238 8-195 (201)
132 cd01893 Miro1 Miro1 subfamily. 99.7 3.3E-16 7.2E-21 140.2 16.0 158 47-234 2-163 (166)
133 PRK09554 feoB ferrous iron tra 99.7 1.4E-16 3E-21 172.9 16.1 153 45-234 3-167 (772)
134 cd01861 Rab6 Rab6 subfamily. 99.7 3.3E-16 7.2E-21 139.0 15.6 152 47-232 2-159 (161)
135 cd04149 Arf6 Arf6 subfamily. 99.7 2.3E-16 5E-21 141.7 14.6 155 44-232 8-167 (168)
136 cd01866 Rab2 Rab2 subfamily. 99.7 3.3E-16 7.2E-21 140.5 15.1 157 45-233 4-164 (168)
137 cd01882 BMS1 Bms1. Bms1 is an 99.7 2.1E-15 4.6E-20 141.8 21.1 187 40-255 34-221 (225)
138 cd01878 HflX HflX subfamily. 99.7 3.1E-16 6.7E-21 145.3 15.3 153 42-233 38-203 (204)
139 cd01865 Rab3 Rab3 subfamily. 99.7 3.5E-16 7.6E-21 139.9 14.9 157 46-234 2-162 (165)
140 smart00173 RAS Ras subfamily o 99.7 2.6E-16 5.7E-21 140.2 14.0 155 47-234 2-161 (164)
141 cd01862 Rab7 Rab7 subfamily. 99.7 6.9E-16 1.5E-20 138.4 16.7 155 46-233 1-165 (172)
142 cd00879 Sar1 Sar1 subfamily. 99.7 1.8E-16 4E-21 145.0 13.2 156 44-233 18-189 (190)
143 cd04114 Rab30 Rab30 subfamily. 99.7 4.4E-16 9.5E-21 139.5 15.2 156 43-232 5-166 (169)
144 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 4.1E-16 8.9E-21 139.4 15.0 157 45-233 2-162 (166)
145 cd04089 eRF3_II eRF3_II: domai 99.7 1.3E-16 2.7E-21 125.3 10.2 82 244-329 1-82 (82)
146 cd04150 Arf1_5_like Arf1-Arf5- 99.7 4.3E-16 9.3E-21 138.6 14.9 153 46-232 1-158 (159)
147 cd04119 RJL RJL (RabJ-Like) su 99.7 4.6E-16 1E-20 138.7 15.2 154 46-233 1-165 (168)
148 cd01867 Rab8_Rab10_Rab13_like 99.7 4.7E-16 1E-20 139.3 15.1 157 45-233 3-163 (167)
149 PRK00093 GTP-binding protein D 99.7 4.9E-16 1.1E-20 160.7 17.5 152 46-234 2-161 (435)
150 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.6E-16 7.7E-21 138.6 14.2 153 46-232 2-159 (162)
151 COG2229 Predicted GTPase [Gene 99.7 8.8E-16 1.9E-20 134.2 16.1 167 43-233 8-176 (187)
152 cd01863 Rab18 Rab18 subfamily. 99.7 3.9E-16 8.5E-21 138.6 14.3 154 46-232 1-159 (161)
153 cd04112 Rab26 Rab26 subfamily. 99.7 5.7E-16 1.2E-20 142.1 15.7 157 46-235 1-163 (191)
154 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 5.8E-16 1.2E-20 143.2 15.3 156 46-234 1-167 (201)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4.4E-16 9.5E-21 141.9 14.2 160 45-234 3-169 (183)
156 cd00880 Era_like Era (E. coli 99.7 7.5E-16 1.6E-20 135.1 15.3 154 50-233 1-162 (163)
157 cd04127 Rab27A Rab27a subfamil 99.7 1E-15 2.3E-20 138.6 16.4 155 44-232 3-174 (180)
158 cd04136 Rap_like Rap-like subf 99.7 6.6E-16 1.4E-20 137.3 14.7 155 46-233 2-161 (163)
159 PLN00223 ADP-ribosylation fact 99.7 7.1E-16 1.5E-20 140.2 15.2 157 44-234 16-177 (181)
160 TIGR02528 EutP ethanolamine ut 99.7 2.8E-16 6E-21 136.8 11.8 136 47-231 2-141 (142)
161 cd01868 Rab11_like Rab11-like. 99.7 9.3E-16 2E-20 136.9 15.1 157 45-233 3-163 (165)
162 cd04122 Rab14 Rab14 subfamily. 99.7 1E-15 2.2E-20 137.0 15.3 156 45-232 2-161 (166)
163 cd04116 Rab9 Rab9 subfamily. 99.7 1.6E-15 3.4E-20 136.1 16.6 155 44-232 4-168 (170)
164 smart00177 ARF ARF-like small 99.7 9.2E-16 2E-20 138.7 15.0 156 44-233 12-172 (175)
165 cd04158 ARD1 ARD1 subfamily. 99.7 4.8E-16 1E-20 139.7 13.0 155 47-235 1-161 (169)
166 cd04140 ARHI_like ARHI subfami 99.7 1.2E-15 2.6E-20 136.4 15.4 154 46-232 2-162 (165)
167 PRK09518 bifunctional cytidyla 99.7 1.9E-15 4.1E-20 164.7 20.1 156 44-236 274-437 (712)
168 cd04155 Arl3 Arl3 subfamily. 99.7 5.3E-16 1.1E-20 139.6 13.1 156 43-232 12-172 (173)
169 PRK05291 trmE tRNA modificatio 99.7 3.7E-16 8E-21 161.1 13.7 149 44-235 214-370 (449)
170 smart00178 SAR Sar1p-like memb 99.7 1.3E-15 2.8E-20 138.9 15.4 155 44-232 16-182 (184)
171 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.3E-15 2.8E-20 137.0 15.2 157 47-234 2-164 (170)
172 cd01876 YihA_EngB The YihA (En 99.7 3.4E-15 7.4E-20 132.8 17.7 155 48-233 2-169 (170)
173 PTZ00369 Ras-like protein; Pro 99.7 1E-15 2.2E-20 140.1 14.5 158 44-234 4-166 (189)
174 cd04110 Rab35 Rab35 subfamily. 99.7 1.6E-15 3.4E-20 140.1 15.8 159 44-234 5-166 (199)
175 cd04156 ARLTS1 ARLTS1 subfamil 99.7 8.1E-16 1.8E-20 136.5 13.3 153 47-232 1-159 (160)
176 cd04159 Arl10_like Arl10-like 99.7 7.7E-16 1.7E-20 135.5 13.0 152 48-232 2-158 (159)
177 cd04175 Rap1 Rap1 subgroup. T 99.7 1.1E-15 2.4E-20 136.3 14.1 155 46-233 2-161 (164)
178 PLN03118 Rab family protein; P 99.7 2E-15 4.2E-20 140.8 16.3 159 43-234 12-176 (211)
179 cd03707 EFTU_III Domain III of 99.7 8.2E-16 1.8E-20 123.1 11.7 88 336-424 3-90 (90)
180 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.8E-15 6.1E-20 134.7 16.6 158 45-233 2-167 (170)
181 cd00157 Rho Rho (Ras homology) 99.7 1.4E-15 3E-20 136.3 14.6 157 46-232 1-170 (171)
182 cd04147 Ras_dva Ras-dva subfam 99.7 1.3E-15 2.8E-20 140.5 14.3 155 47-235 1-163 (198)
183 cd04139 RalA_RalB RalA/RalB su 99.7 1.1E-15 2.5E-20 135.7 13.3 155 46-233 1-160 (164)
184 cd03696 selB_II selB_II: this 99.7 6E-16 1.3E-20 121.9 10.1 83 245-329 1-83 (83)
185 TIGR03156 GTP_HflX GTP-binding 99.7 1.8E-15 3.8E-20 151.0 15.8 148 44-232 188-349 (351)
186 TIGR02729 Obg_CgtA Obg family 99.7 2E-15 4.4E-20 149.3 16.1 157 43-234 155-328 (329)
187 PRK12299 obgE GTPase CgtA; Rev 99.7 2.4E-15 5.2E-20 148.9 16.5 159 43-235 156-328 (335)
188 cd04118 Rab24 Rab24 subfamily. 99.7 2.4E-15 5.1E-20 138.1 15.2 160 46-234 1-165 (193)
189 cd04176 Rap2 Rap2 subgroup. T 99.7 2.1E-15 4.5E-20 134.3 14.3 155 46-233 2-161 (163)
190 PTZ00133 ADP-ribosylation fact 99.7 2.1E-15 4.6E-20 137.2 14.6 155 45-233 17-176 (182)
191 cd04123 Rab21 Rab21 subfamily. 99.7 2.7E-15 5.9E-20 132.9 14.9 154 46-233 1-160 (162)
192 cd00877 Ran Ran (Ras-related n 99.7 2E-15 4.3E-20 135.3 14.1 153 46-234 1-158 (166)
193 cd04144 Ras2 Ras2 subfamily. 99.7 1.3E-15 2.9E-20 139.5 13.3 156 47-235 1-163 (190)
194 cd04120 Rab12 Rab12 subfamily. 99.7 4.7E-15 1E-19 137.0 16.8 154 47-233 2-161 (202)
195 PRK12298 obgE GTPase CgtA; Rev 99.6 2.7E-15 5.8E-20 151.4 16.0 159 45-236 159-334 (390)
196 cd04177 RSR1 RSR1 subgroup. R 99.6 3E-15 6.6E-20 134.2 14.5 156 46-233 2-162 (168)
197 cd00876 Ras Ras family. The R 99.6 3E-15 6.5E-20 132.3 14.2 154 47-233 1-159 (160)
198 cd01881 Obg_like The Obg-like 99.6 2.3E-15 4.9E-20 135.5 13.6 149 50-232 1-174 (176)
199 cd04121 Rab40 Rab40 subfamily. 99.6 6.7E-15 1.5E-19 134.6 16.8 156 44-233 5-165 (189)
200 cd04101 RabL4 RabL4 (Rab-like4 99.6 5.8E-15 1.3E-19 131.5 15.8 156 46-233 1-162 (164)
201 cd04134 Rho3 Rho3 subfamily. 99.6 5.5E-15 1.2E-19 135.3 16.0 161 46-237 1-176 (189)
202 cd04135 Tc10 TC10 subfamily. 99.6 4.3E-15 9.3E-20 133.8 15.0 155 46-232 1-171 (174)
203 PLN03110 Rab GTPase; Provision 99.6 5E-15 1.1E-19 138.6 15.7 157 44-234 11-173 (216)
204 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 4.1E-15 8.9E-20 134.1 14.1 156 46-234 3-163 (172)
205 cd04109 Rab28 Rab28 subfamily. 99.6 7.2E-15 1.6E-19 137.4 16.1 156 46-234 1-165 (215)
206 COG0370 FeoB Fe2+ transport sy 99.6 2.6E-15 5.7E-20 155.5 14.0 151 45-235 3-164 (653)
207 cd03704 eRF3c_III This family 99.6 3.9E-15 8.5E-20 123.4 12.5 89 335-427 2-108 (108)
208 PF10662 PduV-EutP: Ethanolami 99.6 2.9E-15 6.3E-20 128.2 11.6 136 46-231 2-142 (143)
209 TIGR00450 mnmE_trmE_thdF tRNA 99.6 5.5E-15 1.2E-19 151.7 15.4 149 43-232 201-357 (442)
210 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 4.1E-15 8.9E-20 133.0 12.6 159 48-232 2-163 (164)
211 cd04161 Arl2l1_Arl13_like Arl2 99.6 5.6E-15 1.2E-19 132.5 13.3 160 47-232 1-166 (167)
212 cd01874 Cdc42 Cdc42 subfamily. 99.6 7.8E-15 1.7E-19 132.6 14.3 156 46-232 2-172 (175)
213 cd04137 RheB Rheb (Ras Homolog 99.6 8.9E-15 1.9E-19 132.6 14.6 156 46-234 2-162 (180)
214 cd03695 CysN_NodQ_II CysN_NodQ 99.6 4.4E-15 9.6E-20 116.0 10.7 81 245-329 1-81 (81)
215 cd04146 RERG_RasL11_like RERG/ 99.6 3.8E-15 8.2E-20 133.0 11.9 153 47-232 1-161 (165)
216 KOG0094|consensus 99.6 4E-14 8.7E-19 124.4 17.8 171 38-239 15-189 (221)
217 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.7E-14 3.6E-19 131.3 16.2 159 46-234 1-165 (182)
218 COG0486 ThdF Predicted GTPase 99.6 3.3E-15 7.1E-20 148.8 12.4 155 43-236 215-377 (454)
219 KOG0092|consensus 99.6 7.7E-15 1.7E-19 128.9 13.3 165 44-239 4-171 (200)
220 PLN03108 Rab family protein; P 99.6 1.3E-14 2.8E-19 135.2 15.7 158 45-234 6-167 (210)
221 cd04142 RRP22 RRP22 subfamily. 99.6 1.5E-14 3.3E-19 133.3 16.0 156 46-234 1-173 (198)
222 cd01871 Rac1_like Rac1-like su 99.6 1.1E-14 2.4E-19 131.5 14.7 157 45-232 1-172 (174)
223 cd04132 Rho4_like Rho4-like su 99.6 1.2E-14 2.6E-19 132.6 15.0 158 46-234 1-166 (187)
224 PRK12296 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.7E-19 149.2 16.6 158 43-235 157-340 (500)
225 cd04125 RabA_like RabA-like su 99.6 1.6E-14 3.5E-19 132.0 15.6 157 46-234 1-161 (188)
226 smart00174 RHO Rho (Ras homolo 99.6 1.3E-14 2.8E-19 130.7 14.1 155 48-233 1-170 (174)
227 cd01870 RhoA_like RhoA-like su 99.6 1.9E-14 4.2E-19 129.6 15.3 157 46-232 2-172 (175)
228 PLN03071 GTP-binding nuclear p 99.6 2.3E-14 4.9E-19 134.4 16.1 158 43-234 11-171 (219)
229 cd04133 Rop_like Rop subfamily 99.6 1.7E-14 3.6E-19 130.4 14.5 159 46-234 2-172 (176)
230 cd04094 selB_III This family r 99.6 1.4E-14 3.1E-19 117.5 12.5 95 324-424 1-97 (97)
231 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1E-14 2.2E-19 131.4 12.9 154 46-231 1-170 (173)
232 cd01892 Miro2 Miro2 subfamily. 99.6 1.8E-14 3.9E-19 129.4 14.3 162 43-234 2-165 (169)
233 cd04143 Rhes_like Rhes_like su 99.6 1.8E-14 4E-19 137.2 15.0 161 46-238 1-174 (247)
234 cd04126 Rab20 Rab20 subfamily. 99.6 1.9E-14 4E-19 134.6 14.7 158 46-233 1-188 (220)
235 cd03708 GTPBP_III Domain III o 99.6 1E-14 2.2E-19 116.0 10.7 85 335-427 2-87 (87)
236 cd04117 Rab15 Rab15 subfamily. 99.6 3.7E-14 8E-19 126.3 15.5 153 46-232 1-159 (161)
237 cd01875 RhoG RhoG subfamily. 99.6 3E-14 6.5E-19 130.7 15.3 160 45-237 3-179 (191)
238 TIGR00437 feoB ferrous iron tr 99.6 1.3E-14 2.8E-19 154.2 14.4 145 52-233 1-153 (591)
239 PRK11058 GTPase HflX; Provisio 99.6 1.6E-14 3.6E-19 147.4 14.6 152 45-235 197-362 (426)
240 PF00025 Arf: ADP-ribosylation 99.6 1.3E-14 2.8E-19 131.1 12.4 158 41-232 10-173 (175)
241 cd04148 RGK RGK subfamily. Th 99.6 2.6E-14 5.6E-19 134.2 14.5 156 46-234 1-162 (221)
242 PRK12297 obgE GTPase CgtA; Rev 99.6 3.2E-14 6.9E-19 144.4 16.1 153 45-235 158-327 (424)
243 cd04111 Rab39 Rab39 subfamily. 99.6 4E-14 8.7E-19 131.9 15.3 157 45-234 2-165 (211)
244 cd03705 EF1_alpha_III Domain I 99.6 2E-14 4.3E-19 118.4 11.2 85 335-424 2-104 (104)
245 cd00882 Ras_like_GTPase Ras-li 99.6 4.3E-14 9.3E-19 122.4 13.6 148 50-231 1-156 (157)
246 cd04093 HBS1_C HBS1_C: this fa 99.6 3.3E-14 7.2E-19 117.7 12.0 88 335-427 2-107 (107)
247 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 6.7E-14 1.4E-18 127.3 14.8 157 43-232 3-177 (182)
248 cd04105 SR_beta Signal recogni 99.6 7.5E-14 1.6E-18 129.2 15.3 111 47-175 2-123 (203)
249 cd01896 DRG The developmentall 99.5 1.7E-13 3.6E-18 129.5 16.5 82 47-144 2-90 (233)
250 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 1.6E-13 3.4E-18 129.2 16.2 158 44-232 12-185 (232)
251 COG5192 BMS1 GTP-binding prote 99.5 3.2E-13 7E-18 135.0 18.8 237 29-294 53-302 (1077)
252 cd04131 Rnd Rnd subfamily. Th 99.5 1.2E-13 2.5E-18 125.3 14.0 156 46-232 2-173 (178)
253 cd04104 p47_IIGP_like p47 (47- 99.5 2.7E-13 5.8E-18 125.0 16.3 162 46-238 2-187 (197)
254 KOG0084|consensus 99.5 2.2E-13 4.8E-18 120.2 14.7 155 44-232 8-169 (205)
255 cd01513 Translation_factor_III 99.5 8.5E-14 1.8E-18 114.2 11.1 85 335-424 2-102 (102)
256 smart00176 RAN Ran (Ras-relate 99.5 1.8E-13 3.8E-18 126.3 13.6 148 51-234 1-153 (200)
257 PF01926 MMR_HSR1: 50S ribosom 99.5 1.1E-13 2.3E-18 116.3 10.8 107 47-170 1-116 (116)
258 KOG1423|consensus 99.5 2.3E-12 4.9E-17 121.0 19.6 168 42-236 69-272 (379)
259 PF00071 Ras: Ras family; Int 99.5 4.7E-13 1E-17 118.9 14.2 155 47-232 1-158 (162)
260 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.6E-12 3.5E-17 121.7 17.7 156 46-232 2-173 (222)
261 cd04129 Rho2 Rho2 subfamily. 99.5 5.2E-13 1.1E-17 122.0 14.0 156 46-233 2-171 (187)
262 PRK09866 hypothetical protein; 99.5 1.4E-12 3E-17 134.9 18.4 113 107-232 229-350 (741)
263 cd01850 CDC_Septin CDC/Septin. 99.5 6E-12 1.3E-16 121.8 21.7 150 45-207 4-184 (276)
264 cd04103 Centaurin_gamma Centau 99.5 6.8E-13 1.5E-17 117.9 13.5 151 46-232 1-156 (158)
265 COG2262 HflX GTPases [General 99.5 4.5E-13 9.8E-18 131.3 12.7 155 42-235 189-356 (411)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4.5E-13 9.7E-18 123.4 12.1 161 46-236 1-185 (196)
267 KOG0078|consensus 99.5 1.6E-12 3.4E-17 116.5 15.0 157 44-232 11-171 (207)
268 KOG0394|consensus 99.5 7.3E-13 1.6E-17 115.4 12.0 159 43-232 7-175 (210)
269 COG1084 Predicted GTPase [Gene 99.5 8.2E-13 1.8E-17 125.7 13.4 125 44-185 167-304 (346)
270 PTZ00132 GTP-binding nuclear p 99.4 2.9E-12 6.3E-17 119.7 15.8 158 41-234 5-167 (215)
271 KOG1489|consensus 99.4 1.4E-12 3E-17 123.2 13.1 154 43-232 194-364 (366)
272 COG3596 Predicted GTPase [Gene 99.4 1.1E-12 2.5E-17 122.0 12.4 169 42-239 36-226 (296)
273 PRK13768 GTPase; Provisional 99.4 1.8E-12 3.9E-17 124.0 13.6 177 46-236 3-248 (253)
274 KOG0098|consensus 99.4 4E-12 8.6E-17 111.0 14.4 156 44-232 5-165 (216)
275 cd01873 RhoBTB RhoBTB subfamil 99.4 4.5E-12 9.7E-17 116.5 14.7 157 45-232 2-193 (195)
276 cd03688 eIF2_gamma_II eIF2_gam 99.4 2E-12 4.3E-17 104.2 10.2 91 241-331 2-113 (113)
277 KOG0073|consensus 99.4 6.6E-12 1.4E-16 107.4 13.0 154 44-232 15-175 (185)
278 KOG0095|consensus 99.4 9.4E-12 2E-16 104.4 13.5 158 44-234 6-168 (213)
279 KOG0080|consensus 99.4 6E-12 1.3E-16 107.1 12.0 157 44-232 10-171 (209)
280 PRK09435 membrane ATPase/prote 99.4 8.1E-12 1.8E-16 122.8 14.5 175 43-235 54-260 (332)
281 KOG1191|consensus 99.4 1.7E-12 3.7E-17 129.2 9.4 162 43-233 266-448 (531)
282 COG1163 DRG Predicted GTPase [ 99.4 5.9E-12 1.3E-16 119.5 12.2 88 41-144 59-153 (365)
283 cd04095 CysN_NoDQ_III TCysN_No 99.3 7.2E-12 1.6E-16 102.9 10.1 84 335-424 2-103 (103)
284 KOG0076|consensus 99.3 1.4E-11 3E-16 106.5 11.0 173 39-236 11-188 (197)
285 PF08477 Miro: Miro-like prote 99.3 4.2E-12 9.1E-17 106.8 7.7 113 47-172 1-119 (119)
286 PLN00023 GTP-binding protein; 99.3 2.7E-11 5.9E-16 117.6 14.3 140 42-196 18-190 (334)
287 PF09439 SRPRB: Signal recogni 99.3 1.1E-11 2.5E-16 111.0 10.6 122 45-186 3-137 (181)
288 KOG0075|consensus 99.3 1E-11 2.2E-16 104.1 9.2 155 44-233 19-180 (186)
289 cd04102 RabL3 RabL3 (Rab-like3 99.3 6.4E-11 1.4E-15 109.3 15.4 145 46-210 1-175 (202)
290 KOG0093|consensus 99.3 3.2E-11 7E-16 101.1 12.0 157 46-234 22-182 (193)
291 KOG0087|consensus 99.3 3.8E-11 8.3E-16 107.3 11.7 143 44-210 13-161 (222)
292 COG0536 Obg Predicted GTPase [ 99.3 6.9E-11 1.5E-15 113.2 14.1 154 44-234 158-332 (369)
293 PF03029 ATP_bind_1: Conserved 99.3 1.3E-11 2.9E-16 116.5 9.3 167 50-232 1-234 (238)
294 COG1100 GTPase SAR1 and relate 99.3 1.6E-10 3.4E-15 108.1 15.7 115 45-176 5-126 (219)
295 COG4917 EutP Ethanolamine util 99.2 7.8E-11 1.7E-15 96.4 9.4 138 46-232 2-143 (148)
296 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 2E-10 4.3E-15 90.4 11.5 79 247-327 3-82 (84)
297 KOG0086|consensus 99.2 4.4E-10 9.5E-15 94.9 14.1 145 45-210 9-156 (214)
298 KOG0090|consensus 99.2 1.6E-10 3.4E-15 103.5 11.6 126 46-190 39-178 (238)
299 KOG0070|consensus 99.2 5E-11 1.1E-15 104.7 8.2 160 42-235 14-178 (181)
300 KOG0079|consensus 99.2 2.8E-10 6.1E-15 95.6 11.9 155 46-232 9-166 (198)
301 cd01853 Toc34_like Toc34-like 99.2 1.3E-09 2.9E-14 103.6 17.5 155 41-210 27-210 (249)
302 cd01899 Ygr210 Ygr210 subfamil 99.2 7.5E-10 1.6E-14 108.9 15.9 84 48-143 1-111 (318)
303 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 1.2E-09 2.5E-14 102.3 16.3 157 47-232 1-173 (232)
304 TIGR00750 lao LAO/AO transport 99.2 1E-09 2.2E-14 107.7 16.4 173 43-233 32-236 (300)
305 PTZ00099 rab6; Provisional 99.2 3.2E-10 7E-15 102.5 11.5 117 103-237 24-144 (176)
306 PF05049 IIGP: Interferon-indu 99.1 4.9E-10 1.1E-14 111.1 12.7 169 43-239 33-222 (376)
307 KOG1532|consensus 99.1 7.4E-10 1.6E-14 102.7 12.7 177 43-233 17-262 (366)
308 PF04548 AIG1: AIG1 family; I 99.1 3.3E-09 7.3E-14 98.8 16.0 164 46-233 1-184 (212)
309 TIGR00073 hypB hydrogenase acc 99.1 1.6E-09 3.4E-14 100.7 12.7 165 42-232 19-204 (207)
310 KOG0088|consensus 99.1 9.6E-10 2.1E-14 93.4 9.3 156 45-232 13-172 (218)
311 PF03308 ArgK: ArgK protein; 99.0 2.1E-09 4.5E-14 100.4 11.9 168 43-233 27-228 (266)
312 KOG0091|consensus 99.0 1.2E-08 2.7E-13 87.3 14.9 152 45-232 8-170 (213)
313 TIGR02836 spore_IV_A stage IV 99.0 6.4E-09 1.4E-13 102.9 14.8 170 44-235 16-237 (492)
314 TIGR00101 ureG urease accessor 99.0 2.9E-09 6.4E-14 98.0 11.8 164 46-234 2-195 (199)
315 KOG0395|consensus 99.0 3.7E-09 8E-14 96.9 12.2 157 45-234 3-164 (196)
316 cd01342 Translation_Factor_II_ 99.0 4E-09 8.7E-14 81.7 10.7 82 245-328 1-82 (83)
317 PRK09602 translation-associate 99.0 9.7E-09 2.1E-13 104.1 16.2 81 46-142 2-113 (396)
318 PF03144 GTP_EFTU_D2: Elongati 99.0 2.1E-09 4.5E-14 82.5 8.8 70 259-328 1-74 (74)
319 PF00350 Dynamin_N: Dynamin fa 99.0 3.2E-09 7E-14 94.9 10.8 66 106-171 99-168 (168)
320 KOG0097|consensus 99.0 1.9E-08 4E-13 83.9 13.7 141 44-210 10-158 (215)
321 KOG0081|consensus 99.0 9.8E-10 2.1E-14 93.4 6.0 144 46-210 10-166 (219)
322 PRK10463 hydrogenase nickel in 99.0 4.7E-09 1E-13 100.9 11.0 167 41-232 100-286 (290)
323 COG0378 HypB Ni2+-binding GTPa 98.9 1.1E-08 2.3E-13 91.3 11.1 164 45-232 13-198 (202)
324 smart00053 DYNc Dynamin, GTPas 98.9 8.8E-09 1.9E-13 97.0 11.1 132 44-176 25-207 (240)
325 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.6E-08 7.9E-13 95.4 15.2 119 42-175 35-167 (313)
326 KOG4252|consensus 98.9 1.6E-09 3.5E-14 93.9 5.0 144 45-210 20-166 (246)
327 KOG0071|consensus 98.9 3.1E-08 6.8E-13 82.7 12.0 156 45-234 17-177 (180)
328 PF00735 Septin: Septin; Inte 98.9 5.4E-08 1.2E-12 94.3 15.7 143 45-195 4-176 (281)
329 COG1703 ArgK Putative periplas 98.9 6.1E-08 1.3E-12 91.8 14.5 171 43-234 49-253 (323)
330 KOG0083|consensus 98.9 1.1E-09 2.4E-14 90.4 2.5 140 50-212 2-147 (192)
331 PRK09601 GTP-binding protein Y 98.8 4.5E-08 9.7E-13 97.2 13.9 81 46-142 3-107 (364)
332 cd03690 Tet_II Tet_II: This su 98.8 2.5E-08 5.5E-13 78.6 9.3 81 242-329 1-85 (85)
333 KOG0072|consensus 98.8 6.5E-09 1.4E-13 87.2 5.6 158 44-234 17-178 (182)
334 KOG0074|consensus 98.8 3.8E-08 8.3E-13 82.3 9.6 144 43-210 15-164 (185)
335 COG5019 CDC3 Septin family pro 98.8 7.7E-07 1.7E-11 86.7 19.6 143 43-194 21-195 (373)
336 cd04092 mtEFG2_II_like mtEFG2_ 98.8 5.7E-08 1.2E-12 76.3 9.8 79 245-329 1-83 (83)
337 cd03691 BipA_TypA_II BipA_TypA 98.8 9E-08 1.9E-12 75.7 10.8 80 245-328 1-85 (86)
338 KOG0410|consensus 98.8 2.1E-08 4.7E-13 95.3 8.2 150 43-234 176-340 (410)
339 PF14578 GTP_EFTU_D4: Elongati 98.7 1.1E-07 2.5E-12 72.8 9.8 78 243-328 3-80 (81)
340 cd04088 EFG_mtEFG_II EFG_mtEFG 98.7 1.3E-07 2.8E-12 74.3 10.0 78 246-329 2-83 (83)
341 cd03689 RF3_II RF3_II: this su 98.7 1.7E-07 3.8E-12 73.8 10.1 76 248-329 2-84 (85)
342 KOG2486|consensus 98.7 4.1E-08 9E-13 91.7 7.4 158 43-231 134-312 (320)
343 cd03699 lepA_II lepA_II: This 98.7 2.3E-07 5E-12 73.4 10.7 82 245-329 1-86 (86)
344 KOG1486|consensus 98.7 2.7E-07 5.8E-12 84.9 12.2 86 44-145 61-153 (364)
345 KOG0077|consensus 98.6 1.3E-07 2.8E-12 81.5 8.4 113 45-177 20-137 (193)
346 cd04091 mtEFG1_II_like mtEFG1_ 98.6 3.8E-07 8.2E-12 71.2 9.9 75 246-328 2-80 (81)
347 KOG1490|consensus 98.6 8.6E-08 1.9E-12 96.0 6.9 148 42-210 165-326 (620)
348 KOG1547|consensus 98.6 2.3E-06 5E-11 78.3 15.0 151 35-196 37-219 (336)
349 TIGR00993 3a0901s04IAP86 chlor 98.6 1.1E-06 2.5E-11 92.0 14.7 116 45-175 118-250 (763)
350 PRK10416 signal recognition pa 98.6 1.1E-06 2.4E-11 86.6 14.0 147 44-206 113-293 (318)
351 PTZ00258 GTP-binding protein; 98.6 2.1E-07 4.6E-12 93.5 9.0 83 44-142 20-126 (390)
352 KOG3883|consensus 98.6 6.3E-07 1.4E-11 76.2 10.3 162 45-240 9-180 (198)
353 cd01900 YchF YchF subfamily. 98.6 1.7E-07 3.6E-12 90.2 7.6 80 48-143 1-104 (274)
354 cd01859 MJ1464 MJ1464. This f 98.5 3.7E-07 7.9E-12 80.7 9.3 88 128-235 9-96 (156)
355 TIGR00064 ftsY signal recognit 98.5 1.9E-06 4E-11 83.3 12.7 128 43-175 70-231 (272)
356 KOG3886|consensus 98.5 1.6E-06 3.5E-11 78.9 10.9 149 45-209 4-163 (295)
357 PRK14974 cell division protein 98.5 8.5E-07 1.8E-11 87.8 9.9 126 44-175 139-293 (336)
358 KOG2655|consensus 98.4 1.5E-05 3.3E-10 78.4 17.7 143 44-195 20-192 (366)
359 KOG1673|consensus 98.4 4.9E-06 1.1E-10 71.0 12.3 159 41-232 16-183 (205)
360 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.5E-11 78.9 8.6 99 115-235 2-101 (171)
361 KOG0448|consensus 98.4 2.2E-06 4.8E-11 89.1 11.2 100 109-210 207-311 (749)
362 TIGR01425 SRP54_euk signal rec 98.4 2.6E-06 5.7E-11 86.5 11.6 127 43-175 98-253 (429)
363 KOG1707|consensus 98.4 1.6E-06 3.4E-11 88.7 9.9 117 42-175 6-129 (625)
364 COG0012 Predicted GTPase, prob 98.4 5.2E-06 1.1E-10 81.6 12.9 90 45-142 2-108 (372)
365 KOG1534|consensus 98.4 1.5E-06 3.2E-11 78.1 8.2 126 47-176 5-179 (273)
366 cd03115 SRP The signal recogni 98.4 5.2E-06 1.1E-10 74.7 11.8 124 47-175 2-153 (173)
367 KOG0393|consensus 98.3 1.9E-06 4.1E-11 77.9 8.6 156 44-231 3-175 (198)
368 PRK14722 flhF flagellar biosyn 98.3 3E-06 6.5E-11 84.8 10.9 128 45-175 137-295 (374)
369 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.1E-06 2.5E-11 77.7 7.2 89 126-233 3-93 (157)
370 cd01855 YqeH YqeH. YqeH is an 98.3 2.1E-06 4.6E-11 78.4 8.6 105 116-235 19-125 (190)
371 cd03700 eEF2_snRNP_like_II EF2 98.3 5.9E-06 1.3E-10 66.3 9.9 79 246-328 2-92 (93)
372 TIGR03596 GTPase_YlqF ribosome 98.3 2.3E-06 4.9E-11 83.1 8.9 98 116-235 5-103 (276)
373 KOG3905|consensus 98.3 1.8E-05 3.9E-10 75.6 14.3 174 25-232 35-287 (473)
374 PF00448 SRP54: SRP54-type pro 98.2 4.9E-06 1.1E-10 76.4 9.2 125 46-175 2-154 (196)
375 KOG1533|consensus 98.2 4.8E-06 1E-10 76.1 8.8 124 48-174 5-176 (290)
376 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 4.7E-06 1E-10 72.3 8.3 78 123-210 3-82 (141)
377 cd01849 YlqF_related_GTPase Yl 98.2 4.2E-06 9.2E-11 73.9 8.1 82 133-233 1-83 (155)
378 cd01858 NGP_1 NGP-1. Autoanti 98.2 2.8E-06 6E-11 75.2 6.2 57 44-118 101-157 (157)
379 PRK09563 rbgA GTPase YlqF; Rev 98.2 5E-06 1.1E-10 81.2 8.2 100 114-235 6-106 (287)
380 cd03114 ArgK-like The function 98.2 1.3E-05 2.8E-10 70.2 9.8 117 48-172 2-148 (148)
381 KOG1954|consensus 98.1 2.5E-05 5.3E-10 75.9 11.9 139 46-185 59-235 (532)
382 cd03110 Fer4_NifH_child This p 98.1 5.2E-05 1.1E-09 68.5 13.6 81 106-194 91-171 (179)
383 cd00066 G-alpha G protein alph 98.1 3.4E-05 7.5E-10 76.3 13.3 74 100-174 153-241 (317)
384 cd04178 Nucleostemin_like Nucl 98.1 4.1E-06 8.9E-11 75.2 6.1 57 44-118 116-172 (172)
385 TIGR00157 ribosome small subun 98.1 9.1E-06 2E-10 77.4 8.3 87 127-232 32-120 (245)
386 PF03193 DUF258: Protein of un 98.1 3.1E-06 6.6E-11 74.5 4.6 65 46-121 36-100 (161)
387 PRK11889 flhF flagellar biosyn 98.1 1.5E-05 3.2E-10 79.6 9.9 126 45-175 241-391 (436)
388 cd04090 eEF2_II_snRNP Loc2 eEF 98.1 4.1E-05 8.9E-10 61.5 10.7 67 246-312 2-80 (94)
389 PRK12289 GTPase RsgA; Reviewed 98.1 1.7E-05 3.6E-10 79.3 9.8 85 128-232 86-172 (352)
390 COG3640 CooC CO dehydrogenase 98.1 2.8E-05 6.1E-10 71.5 10.2 65 107-174 133-198 (255)
391 PRK00771 signal recognition pa 98.1 3.2E-05 6.9E-10 79.3 11.8 126 44-175 94-246 (437)
392 TIGR00487 IF-2 translation ini 98.0 0.00013 2.9E-09 77.8 16.3 182 113-328 392-575 (587)
393 cd02036 MinD Bacterial cell di 98.0 6.7E-05 1.5E-09 67.4 12.2 121 50-174 5-127 (179)
394 cd01849 YlqF_related_GTPase Yl 98.0 1.1E-05 2.3E-10 71.3 5.9 57 44-118 99-155 (155)
395 cd01851 GBP Guanylate-binding 98.0 5.3E-05 1.2E-09 71.1 10.1 90 42-143 4-103 (224)
396 CHL00189 infB translation init 97.9 0.00034 7.4E-09 76.1 17.3 182 113-328 549-731 (742)
397 PRK05306 infB translation init 97.9 0.00035 7.5E-09 76.7 17.5 182 113-328 594-777 (787)
398 PRK00098 GTPase RsgA; Reviewed 97.9 4.1E-05 8.9E-10 75.1 9.4 82 129-230 78-162 (298)
399 PRK12726 flagellar biosynthesi 97.9 5.6E-05 1.2E-09 75.3 10.1 127 44-175 205-356 (407)
400 PF02492 cobW: CobW/HypB/UreG, 97.9 5.6E-05 1.2E-09 68.4 9.4 128 47-177 2-157 (178)
401 PRK10867 signal recognition pa 97.9 0.00012 2.7E-09 74.9 12.9 126 43-174 98-253 (433)
402 cd01855 YqeH YqeH. YqeH is an 97.9 1.5E-05 3.3E-10 72.8 5.5 63 46-118 128-190 (190)
403 PRK12727 flagellar biosynthesi 97.9 0.00019 4E-09 74.5 13.8 127 44-175 349-498 (559)
404 cd01854 YjeQ_engC YjeQ/EngC. 97.9 5.7E-05 1.2E-09 73.7 9.7 83 129-231 76-160 (287)
405 cd03112 CobW_like The function 97.9 6.8E-05 1.5E-09 66.4 9.0 65 107-173 86-158 (158)
406 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.2E-05 4.8E-10 68.1 5.5 55 46-118 84-138 (141)
407 PRK01889 GTPase RsgA; Reviewed 97.9 7E-05 1.5E-09 75.3 9.7 83 129-231 110-193 (356)
408 TIGR00959 ffh signal recogniti 97.9 9.4E-05 2E-09 75.7 10.7 125 44-174 98-252 (428)
409 cd03111 CpaE_like This protein 97.8 0.00016 3.6E-09 59.4 10.0 100 48-170 2-106 (106)
410 TIGR03597 GTPase_YqeH ribosome 97.8 8.6E-05 1.9E-09 74.8 9.8 100 118-232 50-150 (360)
411 COG0532 InfB Translation initi 97.8 0.00088 1.9E-08 68.8 16.6 104 222-328 392-496 (509)
412 KOG0447|consensus 97.8 0.00038 8.3E-09 70.8 13.6 135 41-176 304-494 (980)
413 cd02038 FleN-like FleN is a me 97.8 0.00039 8.5E-09 60.1 12.2 121 50-192 5-126 (139)
414 PRK12288 GTPase RsgA; Reviewed 97.8 2.3E-05 5.1E-10 78.2 5.0 63 47-121 207-270 (347)
415 PRK14721 flhF flagellar biosyn 97.8 0.00013 2.7E-09 74.4 10.1 128 45-175 191-340 (420)
416 PRK05703 flhF flagellar biosyn 97.8 0.00026 5.7E-09 72.7 12.4 148 45-207 221-392 (424)
417 TIGR00092 GTP-binding protein 97.8 4.9E-05 1.1E-09 75.8 6.8 84 46-143 3-109 (368)
418 PRK12288 GTPase RsgA; Reviewed 97.8 0.00018 3.8E-09 72.0 10.8 87 129-232 118-205 (347)
419 PRK06731 flhF flagellar biosyn 97.8 0.00016 3.4E-09 69.6 10.0 127 44-175 74-225 (270)
420 PRK12724 flagellar biosynthesi 97.8 7.5E-05 1.6E-09 75.5 8.0 126 45-175 223-373 (432)
421 PRK12723 flagellar biosynthesi 97.7 0.00016 3.5E-09 73.1 10.1 128 45-175 174-326 (388)
422 cd01856 YlqF YlqF. Proteins o 97.7 6.3E-05 1.4E-09 67.5 6.5 57 44-118 114-170 (171)
423 PRK09563 rbgA GTPase YlqF; Rev 97.7 6.8E-05 1.5E-09 73.2 7.0 57 44-118 120-176 (287)
424 TIGR03596 GTPase_YlqF ribosome 97.7 5.9E-05 1.3E-09 73.2 6.4 57 44-118 117-173 (276)
425 COG0541 Ffh Signal recognition 97.7 0.00028 6.1E-09 70.7 11.1 127 42-175 97-253 (451)
426 PRK11537 putative GTP-binding 97.7 0.00049 1.1E-08 68.0 12.8 149 45-206 4-186 (318)
427 TIGR02475 CobW cobalamin biosy 97.7 0.00064 1.4E-08 67.9 13.8 79 108-188 93-200 (341)
428 KOG0780|consensus 97.7 0.00038 8.3E-09 68.3 11.6 138 32-174 87-253 (483)
429 PF09173 eIF2_C: Initiation fa 97.7 0.00029 6.3E-09 55.1 8.7 78 337-424 2-88 (88)
430 COG0523 Putative GTPases (G3E 97.7 0.00041 8.8E-09 68.4 12.0 148 47-207 3-184 (323)
431 PF05783 DLIC: Dynein light in 97.7 0.00084 1.8E-08 69.5 14.7 60 159-234 195-263 (472)
432 KOG1487|consensus 97.7 7.2E-05 1.6E-09 69.5 6.1 84 46-145 60-150 (358)
433 TIGR03597 GTPase_YqeH ribosome 97.7 2.1E-05 4.4E-10 79.3 2.7 115 46-174 155-279 (360)
434 PRK12289 GTPase RsgA; Reviewed 97.7 5E-05 1.1E-09 75.9 4.9 63 47-121 174-237 (352)
435 COG1162 Predicted GTPases [Gen 97.6 6.1E-05 1.3E-09 72.5 4.8 65 45-121 164-229 (301)
436 TIGR00157 ribosome small subun 97.6 6.8E-05 1.5E-09 71.4 4.8 63 46-121 121-184 (245)
437 COG1162 Predicted GTPases [Gen 97.6 0.00046 1E-08 66.5 10.4 85 130-232 78-164 (301)
438 PRK13796 GTPase YqeH; Provisio 97.6 0.00039 8.5E-09 70.2 10.1 98 120-233 58-157 (365)
439 COG1419 FlhF Flagellar GTP-bin 97.6 0.00032 6.9E-09 70.1 8.9 126 44-175 202-352 (407)
440 KOG0082|consensus 97.6 0.0027 5.9E-08 62.7 15.2 83 92-175 179-276 (354)
441 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00013 2.8E-09 71.3 5.7 64 46-121 162-226 (287)
442 COG1161 Predicted GTPases [Gen 97.5 0.00013 2.7E-09 72.4 5.7 58 43-118 130-187 (322)
443 PRK06995 flhF flagellar biosyn 97.5 0.0011 2.4E-08 68.7 12.6 126 46-175 257-405 (484)
444 cd02037 MRP-like MRP (Multiple 97.5 0.00043 9.4E-09 61.9 8.5 120 51-174 6-134 (169)
445 KOG1491|consensus 97.5 0.00019 4.1E-09 69.4 6.2 84 44-143 19-126 (391)
446 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0012 2.6E-08 52.3 9.8 71 48-146 2-73 (99)
447 KOG0096|consensus 97.4 0.0005 1.1E-08 61.0 7.6 141 43-210 8-154 (216)
448 KOG3887|consensus 97.4 0.00035 7.6E-09 64.4 6.8 150 46-210 28-188 (347)
449 KOG4181|consensus 97.4 0.0015 3.3E-08 63.3 11.4 136 31-174 174-355 (491)
450 cd02042 ParA ParA and ParB of 97.4 0.001 2.2E-08 54.2 9.1 80 48-152 2-82 (104)
451 cd01859 MJ1464 MJ1464. This f 97.4 0.00031 6.7E-09 61.9 6.3 57 44-118 100-156 (156)
452 PRK14723 flhF flagellar biosyn 97.4 0.00032 6.9E-09 76.0 7.4 127 45-175 185-337 (767)
453 cd03703 aeIF5B_II aeIF5B_II: T 97.4 0.0017 3.7E-08 53.1 9.6 80 247-328 3-93 (110)
454 PRK13796 GTPase YqeH; Provisio 97.4 0.00021 4.6E-09 72.1 5.3 62 45-119 160-221 (365)
455 PRK13695 putative NTPase; Prov 97.4 0.0011 2.4E-08 59.6 9.3 120 46-171 1-136 (174)
456 KOG2743|consensus 97.4 0.0026 5.6E-08 60.6 11.8 75 107-188 145-238 (391)
457 smart00275 G_alpha G protein a 97.3 0.0023 5E-08 64.0 12.0 79 95-174 171-264 (342)
458 TIGR00491 aIF-2 translation in 97.3 0.0056 1.2E-07 65.5 15.1 76 251-329 473-549 (590)
459 PRK00098 GTPase RsgA; Reviewed 97.3 0.00032 6.9E-09 68.9 5.0 24 45-68 164-187 (298)
460 KOG4423|consensus 97.2 8.9E-05 1.9E-09 65.4 0.4 155 46-232 26-191 (229)
461 PHA02518 ParA-like protein; Pr 97.2 0.0065 1.4E-07 56.1 12.9 67 106-174 75-146 (211)
462 PF09547 Spore_IV_A: Stage IV 97.2 0.0096 2.1E-07 59.8 14.3 170 44-235 16-237 (492)
463 PF01656 CbiA: CobQ/CobB/MinD/ 97.2 0.00076 1.6E-08 61.4 6.3 73 107-181 94-168 (195)
464 COG0552 FtsY Signal recognitio 97.2 0.0028 6E-08 61.8 10.2 128 42-174 136-297 (340)
465 KOG2485|consensus 97.2 0.00086 1.9E-08 64.3 6.6 66 42-117 140-205 (335)
466 cd03702 IF2_mtIF2_II This fami 97.2 0.0034 7.5E-08 50.3 8.9 75 247-329 3-79 (95)
467 cd04178 Nucleostemin_like Nucl 97.1 0.00089 1.9E-08 60.1 5.9 50 133-183 1-52 (172)
468 cd02035 ArsA ArsA ATPase funct 97.1 0.0071 1.5E-07 56.5 12.2 67 108-174 114-183 (217)
469 TIGR01007 eps_fam capsular exo 97.0 0.015 3.3E-07 53.6 13.0 67 107-174 127-193 (204)
470 TIGR01969 minD_arch cell divis 97.0 0.01 2.3E-07 56.3 12.0 66 107-174 108-173 (251)
471 TIGR03348 VI_IcmF type VI secr 96.9 0.0025 5.4E-08 73.8 8.8 113 46-174 112-256 (1169)
472 PRK13849 putative crown gall t 96.9 0.0061 1.3E-07 57.5 10.0 64 106-172 82-151 (231)
473 KOG3859|consensus 96.9 0.0041 8.9E-08 58.6 8.2 139 45-195 42-210 (406)
474 COG1618 Predicted nucleotide k 96.9 0.021 4.6E-07 49.8 11.7 31 43-73 3-33 (179)
475 KOG1424|consensus 96.8 0.0014 3E-08 66.7 4.3 58 43-118 312-369 (562)
476 KOG2484|consensus 96.7 0.0043 9.3E-08 61.4 7.0 77 112-188 126-204 (435)
477 cd02032 Bchl_like This family 96.7 0.014 3E-07 56.2 10.4 66 107-173 115-184 (267)
478 PRK14845 translation initiatio 96.6 0.042 9.1E-07 62.2 14.7 76 251-329 931-1007(1049)
479 PRK14491 putative bifunctional 96.5 0.26 5.6E-06 53.1 19.6 31 43-73 8-38 (597)
480 KOG2423|consensus 96.5 0.0012 2.7E-08 64.9 1.7 30 38-67 300-329 (572)
481 PRK10751 molybdopterin-guanine 96.4 0.016 3.5E-07 51.8 8.5 28 44-71 5-32 (173)
482 COG1341 Predicted GTPase or GT 96.4 0.012 2.5E-07 58.9 8.0 33 42-74 70-102 (398)
483 cd03701 IF2_IF5B_II IF2_IF5B_I 96.4 0.019 4.2E-07 46.0 7.8 74 247-327 3-77 (95)
484 CHL00175 minD septum-site dete 96.4 0.042 9.1E-07 53.4 11.7 66 107-174 126-191 (281)
485 PRK04004 translation initiatio 96.3 0.11 2.4E-06 55.8 15.6 76 251-329 475-551 (586)
486 cd02117 NifH_like This family 96.3 0.032 6.9E-07 51.8 10.1 68 106-174 115-188 (212)
487 KOG1424|consensus 96.3 0.014 2.9E-07 59.8 7.7 81 121-210 164-245 (562)
488 CHL00072 chlL photochlorophyll 96.2 0.029 6.3E-07 54.8 9.9 66 107-173 115-184 (290)
489 KOG2484|consensus 96.2 0.0038 8.2E-08 61.8 3.3 57 43-118 250-307 (435)
490 smart00010 small_GTPase Small 96.2 0.018 3.9E-07 47.8 7.1 21 47-67 2-22 (124)
491 COG4148 ModC ABC-type molybdat 96.1 0.13 2.9E-06 49.1 12.8 23 47-69 26-48 (352)
492 PF06858 NOG1: Nucleolar GTP-b 96.0 0.036 7.8E-07 39.6 6.7 47 125-172 6-58 (58)
493 TIGR01281 DPOR_bchL light-inde 96.0 0.065 1.4E-06 51.6 10.8 66 107-173 115-184 (268)
494 COG1763 MobB Molybdopterin-gua 95.9 0.045 9.7E-07 48.3 8.5 28 46-73 3-30 (161)
495 PF07015 VirC1: VirC1 protein; 95.8 0.024 5.1E-07 52.9 6.6 123 48-173 4-152 (231)
496 cd03116 MobB Molybdenum is an 95.7 0.047 1E-06 48.3 8.0 28 46-73 2-29 (159)
497 PRK13185 chlL protochlorophyll 95.7 0.14 3E-06 49.3 12.1 65 107-172 117-185 (270)
498 KOG0781|consensus 95.7 0.029 6.2E-07 57.0 7.1 151 21-176 359-545 (587)
499 PF13555 AAA_29: P-loop contai 95.7 0.012 2.5E-07 43.1 3.2 22 47-68 25-46 (62)
500 TIGR03371 cellulose_yhjQ cellu 95.7 0.15 3.3E-06 48.2 11.9 65 108-174 115-181 (246)
No 1
>KOG0460|consensus
Probab=100.00 E-value=9.3e-84 Score=601.41 Aligned_cols=397 Identities=57% Similarity=0.961 Sum_probs=385.3
Q ss_pred cccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEE
Q psy3124 34 SDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHT 113 (463)
Q Consensus 34 ~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~li 113 (463)
++.+.+..+||+.||+.+||+|||||||..++++.+.+.|...++.|...|..++|+.||+||+.++..|++..++|..+
T Consensus 43 ~a~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~ 122 (449)
T KOG0460|consen 43 AAKAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHT 122 (449)
T ss_pred ccccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccC
Confidence 55677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHH
Q psy3124 114 DCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTA 192 (463)
Q Consensus 114 DtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~ 192 (463)
|||||.||++||+.|+++.|++||||+|++|.++||+|||.+++..|+++++|++||.|++ +++.++.++-+++++|..
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 888899999999999999
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEeccccc
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIK 272 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~ 272 (463)
+||+++++|++..||+..+++.++..+.+.+..|++++++++|.|.|+.+.||.|+|.++|.++|+|+|++|++++|.|+
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lK 282 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLK 282 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccc
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCC
Q psy3124 273 RNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGG 352 (463)
Q Consensus 273 ~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 352 (463)
+||++.+.+.++..+..|+.|+++++.+++|.|||++|+.|+|++.++++|||+++.|+..++++.|+|++++|...||+
T Consensus 283 kG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGG 362 (449)
T KOG0460|consen 283 KGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGG 362 (449)
T ss_pred cCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCC
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeeccCC
Q psy3124 353 RYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLGNM 431 (463)
Q Consensus 353 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~~~~ 431 (463)
+.+|+..+|++++|+.++.+.+++.++..+ ++++|||.+.+++.|.+|+++++|+||.||++|+|+|.|+|+++++..
T Consensus 363 R~~pf~s~y~~q~fs~TwD~~~~v~~~~~~-~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtGvvt~~l~lt 440 (449)
T KOG0460|consen 363 RHKPFVSGYRPQMFSRTWDVTGRVDIPPEK-EMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTGVVTDTLPLT 440 (449)
T ss_pred CccchhhccchhheeeecccceEEEccChH-hcccCCCCeEEEEEEecccccCCCceeeEccCCeeeeeeeEeeeeecc
Confidence 999999999999999999999999988654 899999999999999999999999999999999999999999999933
No 2
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-80 Score=567.90 Aligned_cols=391 Identities=51% Similarity=0.873 Sum_probs=375.7
Q ss_pred ccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEe
Q psy3124 35 DDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTD 114 (463)
Q Consensus 35 ~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 114 (463)
+.++|.-.+++.||+.+||+|||||||..+|+..+.+.+...+..+...|..++|+++|+||+.++..|++.+++|..+|
T Consensus 2 ak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVD 81 (394)
T COG0050 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVD 81 (394)
T ss_pred chhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEecc
Confidence 45678888999999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~~ 193 (463)
||||.||++||+.+++++|++||||+|.+|.++||+||+.+++..|+|.+++++||+|+++ ++.++.+..+++++|..+
T Consensus 82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred CCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999994 888899999999999999
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKR 273 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~ 273 (463)
+|+++..|++..||+..++++..|. ..+.+|++++++++|.|.++.++||+++|.++|++.|+|+|++|+|++|+|++
T Consensus 162 ~f~gd~~Pii~gSal~ale~~~~~~--~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkv 239 (394)
T COG0050 162 GFPGDDTPIIRGSALKALEGDAKWE--AKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKV 239 (394)
T ss_pred CCCCCCcceeechhhhhhcCCcchH--HHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeecc
Confidence 9999999999999999999988887 78999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCC
Q psy3124 274 NDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGR 353 (463)
Q Consensus 274 gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 353 (463)
||++.+.+.....++.|++++++++..+++.|||+|++.|++++++++.||++|+.|+.+.+.++|+|++++|.+.+|++
T Consensus 240 g~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keeggr 319 (394)
T COG0050 240 GEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGR 319 (394)
T ss_pred CCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCCC
Confidence 99999987665667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeec
Q psy3124 354 YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 354 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
.+|+..||.+++|+.+..++..+.++.+. +++++||.+.+.++|..|+.+++|.||.+|++|||+|.|+|+++.
T Consensus 320 htpff~~yrpqfyfRttDVtg~i~l~eg~-emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 320 HTPFFHGYRPQFYFRTTDVTGAITLPEGV-EMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred CCCcccCccceeEEEeeeeeeeEeccCCc-ceecCCCceEEEEEEeeeeecCCCCEEEEEeCCeeeeeeEEeeec
Confidence 99999999999999999999988887664 899999999999999999999999999999999999999999876
No 3
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-76 Score=571.75 Aligned_cols=378 Identities=34% Similarity=0.535 Sum_probs=346.4
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHH---------------hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAIT---------------KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~---------------~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
...++++|++++||+|||||||+++|+ +...+.|++++...|.+|+.++||+||+|++.++..|+
T Consensus 2 ~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 2 ASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 356899999999999999999999994 12234688888999999999999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeccCcc--c
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-------QMPQTREHLLLSKQIGIDNVVVYVNKADLV--D 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-------~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~ 175 (463)
++.+.++|+|||||+||+++|+.|+++||+|||||||+.| ..+||+||+.+++.+|+.++||++||||++ +
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 9999999999999999999999999999999999999998 679999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeE
Q psy3124 176 REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPID 250 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~ 250 (463)
+++|++++.++..+++.+|++..+++|+|+||..|.|. ..+||.++ +|+++|+. +..|.+..++||+++|+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~Gp---TLleaLd~-~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGP---TLLEALDQ-LEPPERPLDKPLRLPIQ 237 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCC---hHHHHHhc-cCCCCCCCCCCeEeEee
Confidence 89999999999999999999988899999999999553 34899766 57888885 88899999999999999
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecC
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKA 330 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 330 (463)
++|.+.+.|++..|||++|.|++||+|.+.|.+ ...+|+||++++++++.|.|||+|+++++++..+||++||+++++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~--~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~ 315 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG--VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHS 315 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCc--ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccC
Confidence 999999999999999999999999999999976 568999999999999999999999999999999999999999999
Q ss_pred CCc-cccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEe-cC-----------CCCCccccCCCEEEEEEE
Q psy3124 331 DTL-QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLD-LP-----------GEDDGMLMPGEHGTVTMT 397 (463)
Q Consensus 331 ~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-~~-----------~~~~~~l~~g~~~~v~~~ 397 (463)
+++ ..+..|.|++.+|.++ .+|..||++++|+|+.+++|++. +. ..++.++++|+.++|+++
T Consensus 316 ~n~~t~s~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~ 390 (428)
T COG5256 316 DNPPTVSPEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIE 390 (428)
T ss_pred CCCcccccceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEE
Confidence 865 5568999999999985 78999999999999999999984 21 123679999999999999
Q ss_pred eceEEeecc------CCeEEEEeCCceEEEEEEeeec
Q psy3124 398 LLYKMYLSK------GQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 398 ~~~p~~~~~------~~rfilr~~~~tig~G~V~~~~ 428 (463)
+.+|+|++. .+||+|||.|+|||+|+|.++.
T Consensus 391 ~~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 391 PEKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred ecCceEeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 999999985 3799999999999999999875
No 4
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-73 Score=579.78 Aligned_cols=391 Identities=50% Similarity=0.861 Sum_probs=359.8
Q ss_pred ccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEe
Q psy3124 35 DDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTD 114 (463)
Q Consensus 35 ~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 114 (463)
+.+.|...++++||+++||+|||||||+++|++...+.|+..+..++.+|++++|+++|+|++.....|+++++.++|+|
T Consensus 2 ~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iD 81 (394)
T PRK12736 2 AKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVD 81 (394)
T ss_pred chhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEE
Confidence 45667778999999999999999999999999877777777666666899999999999999999999998899999999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~~ 193 (463)
||||++|+++|++++..+|++++|||+.+|+.+||++|+.++..+++|++|+++||||+++ ++.++.+.+++.++|+.+
T Consensus 82 tPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998889999999984 455666778999999999
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKR 273 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~ 273 (463)
++....+|++++||+++.++...|| .++.+|++.|.+.+|+|.++.++||+|+|+++|.++|.|+|++|+|.+|+|++
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~--~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~ 239 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWE--DAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKV 239 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcch--hhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEec
Confidence 9877779999999999977778898 68899999999989988888899999999999999999999999999999999
Q ss_pred CCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCC
Q psy3124 274 NDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGR 353 (463)
Q Consensus 274 gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 353 (463)
||.|+++|.+.+..++|++|+.+++++++|.|||+|+++|++++.+++++||+||++++++++++|+|++.+|+++++++
T Consensus 240 gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~~ 319 (394)
T PRK12736 240 GDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGGR 319 (394)
T ss_pred CCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCCC
Confidence 99999998754567899999999999999999999999999998899999999999887778899999999999877666
Q ss_pred CccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeec
Q psy3124 354 YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 354 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
+++|..||++++|+|+.++.|++...++ +++|++||.+.|+|+|.+|+|+++++||+||++++|+|+|+|++++
T Consensus 320 ~~~i~~g~~~~l~~~t~~~~~~i~~~~~-~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 320 HTPFFNNYRPQFYFRTTDVTGSIELPEG-TEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred CCcccCCceEEEEEccCeEEEEEEecCC-cceeCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEee
Confidence 7899999999999999999999987644 4789999999999999999999999999999999999999999875
No 5
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=7.1e-73 Score=574.40 Aligned_cols=391 Identities=50% Similarity=0.874 Sum_probs=358.8
Q ss_pred ccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEe
Q psy3124 35 DDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTD 114 (463)
Q Consensus 35 ~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 114 (463)
+...+.++++++||+++||+|||||||+++|++...+.|+.+++.++.+|+.++|+++|+|++.....|++.++.++|+|
T Consensus 2 ~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liD 81 (394)
T TIGR00485 2 AKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVD 81 (394)
T ss_pred chhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEE
Confidence 35667788999999999999999999999999887788887777777899999999999999999999998889999999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~~ 193 (463)
||||++|.++|+.++..+|++++|||+.+|..+||++|+.++..+++|++|+++||||+++ ++.++.+.++++++++.+
T Consensus 82 tpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 82 CPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred CCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998878999999985 445666778999999999
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKR 273 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~ 273 (463)
++....+|++++||+++.++.+.|| .++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|+|++
T Consensus 162 ~~~~~~~~ii~vSa~~g~~g~~~~~--~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~ 239 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKALEGDAEWE--AKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKV 239 (394)
T ss_pred CCCccCccEEECccccccccCCchh--HhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeC
Confidence 8876679999999999987778898 56789999999988888888899999999999999999999999999999999
Q ss_pred CCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCC
Q psy3124 274 NDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGR 353 (463)
Q Consensus 274 gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~ 353 (463)
||.|.++|.+++.+++|++|+.++.++++|.|||+|+++|++++..++++||+|++++.++++++|+|+|.+|++++|++
T Consensus 240 gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~~ 319 (394)
T TIGR00485 240 GEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGGR 319 (394)
T ss_pred CCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCCC
Confidence 99999988544456899999999999999999999999999998899999999999877778899999999999877777
Q ss_pred CccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeec
Q psy3124 354 YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 354 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
+++|+.||++++|+|+.++.|++....+ +++|++|+.+.|+|+|.+|+|+++++||+||++++|+|+|+|+++.
T Consensus 320 ~~~i~~g~~~~l~~~t~~~~~~i~~~~~-~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 320 HTPFFSGYRPQFYFRTTDVTGSITLPEG-VEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred CCccccCceEEEEEecceEEEEEEecCC-cceeCCCCEEEEEEEECceEEEeECCEEEEecCCcEEEEEEEEEec
Confidence 7899999999999999999999987644 4789999999999999999999999999999999999999999875
No 6
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=5.3e-73 Score=579.02 Aligned_cols=394 Identities=50% Similarity=0.875 Sum_probs=356.6
Q ss_pred cccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEE
Q psy3124 34 SDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHT 113 (463)
Q Consensus 34 ~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~li 113 (463)
.+...+..+++++||+++||+|||||||+++|++...+.|......+..+|..++|+++|+|++.....|++++++++|+
T Consensus 50 ~~~~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~i 129 (447)
T PLN03127 50 RSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHV 129 (447)
T ss_pred HHHhhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEE
Confidence 44556777899999999999999999999999887766676654444579999999999999999999999999999999
Q ss_pred eCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHH
Q psy3124 114 DCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTA 192 (463)
Q Consensus 114 DtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~ 192 (463)
|||||.+|+++|+.++..+|+++|||||.+|+.+||++|+.++..+++|++|+++||||+++ ++.++.+.++++++++.
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999985 44556666788899988
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEeccccc
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIK 272 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~ 272 (463)
++++...+|++++||+.+.++.+.+.+..++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|.|+
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~ 289 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIK 289 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEe
Confidence 88876789999999988776666555556789999999998898888889999999999999999999999999999999
Q ss_pred CCCEEEEecCCc--eeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCC
Q psy3124 273 RNDEAELLGFNS--KFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAE 350 (463)
Q Consensus 273 ~gd~v~i~~~~~--~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 350 (463)
+||.|.++|.+. +..++|++|+.++.++++|.|||+|+++|++++..++++||+||+++.++++++|+|+|.+|++++
T Consensus 290 ~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~ 369 (447)
T PLN03127 290 VGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDE 369 (447)
T ss_pred cCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEcccc
Confidence 999999986532 467999999999999999999999999999999999999999999877788999999999999987
Q ss_pred CCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeec
Q psy3124 351 GGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 351 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
+++.++|..||++++|+|+.+++|++.+.++ +.++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|+|+++.
T Consensus 370 gg~~~~i~~g~~~~~~~~t~~~~~~i~~~~~-~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 370 GGRHTPFFSNYRPQFYLRTADVTGKVELPEG-VKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred cccCcccccCceeEEEeeecceeEEEEeccC-ccccCCCCEEEEEEEECceEEEeeCCEEEEEeCCcEEEEEEEEEec
Confidence 7777899999999999999999999987644 4899999999999999999999999999999999999999999875
No 7
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.2e-72 Score=572.20 Aligned_cols=391 Identities=50% Similarity=0.865 Sum_probs=357.5
Q ss_pred ccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEe
Q psy3124 35 DDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTD 114 (463)
Q Consensus 35 ~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 114 (463)
+.+.|..+++++||+++||+|||||||+++|++...+.|..++..++.+|+.++|+++|+|++.....+++++..++|+|
T Consensus 2 ~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iD 81 (396)
T PRK12735 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVD 81 (396)
T ss_pred chhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEE
Confidence 45678888999999999999999999999999877777777666666899999999999999999999999899999999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~ 193 (463)
||||++|.++|..++..+|++++|||+.+|...||++|+.++..+++|++|+++||||++ +++.++.+.+++.++++.+
T Consensus 82 tPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999777789999998 4555677778999999999
Q ss_pred CCCCCCCcEEEccchhhccCC--CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccc
Q psy3124 194 GYDGDNTPFVFGSALLALQGD--SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTI 271 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~--~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l 271 (463)
++.+.++|++++||+++.+.. .+|| .++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|+|
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~--~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i 239 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWE--AKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIV 239 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCccc--ccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEE
Confidence 887667999999999997643 3566 578999999999888888888999999999999999999999999999999
Q ss_pred cCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCC
Q psy3124 272 KRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEG 351 (463)
Q Consensus 272 ~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~ 351 (463)
++||+|.++|.+.+..++|++|+++++++++|.|||+|+++|++++.+++++|++||+++++++++.|+|+|.+|+++++
T Consensus 240 ~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~~ 319 (396)
T PRK12735 240 KVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEG 319 (396)
T ss_pred eCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEecccC
Confidence 99999999987655678999999999999999999999999999999999999999998877789999999999998766
Q ss_pred CCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeec
Q psy3124 352 GRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 352 ~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
+++++|..||++++|+|+.++.|++....+ +++|++||.+.|+|+|++|+|+++++||+||++|+|+|+|.|++++
T Consensus 320 ~~~~~i~~g~~~~l~~~t~~~~~~i~~~~~-~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 320 GRHTPFFNGYRPQFYFRTTDVTGTIELPEG-VEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred CCCCcccCCCeeEEEeccceEEEEEEccCC-CceeCCCCEEEEEEEECceEEEeECCEEEEEcCCcEEEEEEEEEec
Confidence 666899999999999999999999976644 4789999999999999999999999999999999999999999876
No 8
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.9e-72 Score=566.74 Aligned_cols=391 Identities=51% Similarity=0.866 Sum_probs=356.3
Q ss_pred ccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEe
Q psy3124 35 DDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTD 114 (463)
Q Consensus 35 ~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 114 (463)
+.+.|...++++||+++||+|||||||+++|+....+.|+.....++.+|+.++|+++|+|++.....|+++++.++|+|
T Consensus 2 ~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iD 81 (396)
T PRK00049 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVD 81 (396)
T ss_pred chhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEE
Confidence 45677788999999999999999999999999877777766666556799999999999999999999998899999999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~~ 193 (463)
||||.+|..++..++..+|++++|||+.+|..+||++|+.++..+++|.+||++||||+++ ++.++.+.++++++|+.+
T Consensus 82 tPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999996667999999984 555677778999999999
Q ss_pred CCCCCCCcEEEccchhhccC--CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccc
Q psy3124 194 GYDGDNTPFVFGSALLALQG--DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTI 271 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~--~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l 271 (463)
++.+.++|++++||+++.+. ..+|| .++.+|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|.+|++
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~--~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i 239 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWE--KKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGII 239 (396)
T ss_pred CCCccCCcEEEeecccccCCCCccccc--ccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEE
Confidence 88767799999999998653 35787 578999999999888888888999999999999999999999999999999
Q ss_pred cCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCC
Q psy3124 272 KRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEG 351 (463)
Q Consensus 272 ~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~ 351 (463)
++||+|.++|.+.+..++|+||+++++++++|.|||+|+++|++++..++++|++||+++++++++.|+|+|.+|+++++
T Consensus 240 ~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~ 319 (396)
T PRK00049 240 KVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEEG 319 (396)
T ss_pred ecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCcC
Confidence 99999999886445678999999999999999999999999999988999999999998877788999999999998766
Q ss_pred CCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeec
Q psy3124 352 GRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 352 ~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
+++++|+.||++++|+++.++.|++.+.. +++++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|+|++++
T Consensus 320 g~~~~i~~g~~~~~~~~t~~~~~~i~l~~-~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 320 GRHTPFFNGYRPQFYFRTTDVTGVIELPE-GVEMVMPGDNVEMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred CCCCcccCCCEEEEEEecCcEEEEEEecC-CCcccCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEec
Confidence 66789999999999999999999997653 45899999999999999999999999999999999999999999875
No 9
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=9.3e-72 Score=572.30 Aligned_cols=390 Identities=47% Similarity=0.814 Sum_probs=349.8
Q ss_pred ccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCC
Q psy3124 37 ASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCP 116 (463)
Q Consensus 37 ~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtP 116 (463)
..+..+++++||+++||+|||||||+++|+......+......+..+|..++|+++|+|++.....|+++++.++|+|||
T Consensus 73 ~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP 152 (478)
T PLN03126 73 GKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 152 (478)
T ss_pred hhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC
Confidence 34445789999999999999999999999865443332222233468999999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHHcCC
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~~g~ 195 (463)
||++|+++|+.++..+|+++|||||.+|..+||++|+.++..+++|++||++||||+++ ++.++.+.+++.++|+.+++
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998999999999986 45577788899999999998
Q ss_pred CCCCCcEEEccchhhccC----------CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEE
Q psy3124 196 DGDNTPFVFGSALLALQG----------DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGT 265 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~----------~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~ 265 (463)
+..++|++++||.++.+. ..+|| .++.+|+++|.+..|.|.++.+.||+|+|+++|+++|+|+|++|+
T Consensus 233 ~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy--~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~ 310 (478)
T PLN03126 233 PGDDIPIISGSALLALEALMENPNIKRGDNKWV--DKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 310 (478)
T ss_pred CcCcceEEEEEccccccccccccccccCCCchh--hhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEE
Confidence 877899999999998532 33687 468899999998777788888999999999999999999999999
Q ss_pred EecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEE
Q psy3124 266 IKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYL 345 (463)
Q Consensus 266 v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~ 345 (463)
|.+|.|++||+|.++|.+.+..++|++|+.++.++++|.|||+|+++|++++..++++||+|++++.++++++|+|+|.|
T Consensus 311 V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~v 390 (478)
T PLN03126 311 VERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVYV 390 (478)
T ss_pred EEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEEE
Confidence 99999999999999998766779999999999999999999999999999999999999999999877789999999999
Q ss_pred eccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC----CCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEE
Q psy3124 346 LSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG----EDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVAT 421 (463)
Q Consensus 346 l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~ 421 (463)
|+++++++.++|..||++++|+|+.+++|+|.... .+++++++||.+.|+|+|.+|+|+++++||+||++++|+|+
T Consensus 391 L~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~~~Tva~ 470 (478)
T PLN03126 391 LKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGA 470 (478)
T ss_pred ecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEecCCceEEE
Confidence 99876666789999999999999999999998543 23578999999999999999999999999999999999999
Q ss_pred EEEeeec
Q psy3124 422 GIVTKVL 428 (463)
Q Consensus 422 G~V~~~~ 428 (463)
|+|+++.
T Consensus 471 G~V~~v~ 477 (478)
T PLN03126 471 GVIQSII 477 (478)
T ss_pred EEEEEec
Confidence 9999876
No 10
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1e-70 Score=560.32 Aligned_cols=394 Identities=50% Similarity=0.849 Sum_probs=351.3
Q ss_pred cccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEE
Q psy3124 34 SDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHT 113 (463)
Q Consensus 34 ~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~li 113 (463)
++++.|..+++++||+++||+|||||||+++|++............+..+|..++|+++|+|++.....|+++++.++|+
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 35677888899999999999999999999999875433222222223468999999999999999999999999999999
Q ss_pred eCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHH
Q psy3124 114 DCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTA 192 (463)
Q Consensus 114 DtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~ 192 (463)
|||||.+|++++++++..+|++++||||.+|+.+||++|+.++..+++|++|+++||||+++ .+.++.+.+++.++|+.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999995 44567788899999999
Q ss_pred cCCCCCCCcEEEccchhhccC----------CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEE
Q psy3124 193 YGYDGDNTPFVFGSALLALQG----------DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVC 262 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~----------~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv 262 (463)
++++.+.+|++++||+++.+. ..+|| .++.+|+++|.+.+|.|.++.+.||+|+|+++|.+++.|+|+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~--~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv 238 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEALTENPKIKRGENKWV--DKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVA 238 (409)
T ss_pred hCCCCCcceEEEcchhhcccccccCccccccCCchh--hhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEE
Confidence 998776799999999998642 12677 468899999999888888888999999999999999999999
Q ss_pred EEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEE
Q psy3124 263 IGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAE 342 (463)
Q Consensus 263 ~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~ 342 (463)
+|+|.+|+|++||.|.++|.+....++|++|+.+++++++|.|||+|+++|++++..++++||+|++++.++++++|+|+
T Consensus 239 ~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~ 318 (409)
T CHL00071 239 TGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQ 318 (409)
T ss_pred EEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEE
Confidence 99999999999999998875444568999999999999999999999999999988999999999998877889999999
Q ss_pred EEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCC----CCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCce
Q psy3124 343 IYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGE----DDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKL 418 (463)
Q Consensus 343 v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~----~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~t 418 (463)
|.+|++++++++++|..||++++|+|+.+++|+|..... +++.+++||.+.|+|+|.+|+|+++++||+||++++|
T Consensus 319 i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~~~t 398 (409)
T CHL00071 319 VYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRT 398 (409)
T ss_pred EEEEecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecCCeE
Confidence 999998655556799999999999999999999986532 3579999999999999999999999999999999999
Q ss_pred EEEEEEeeecc
Q psy3124 419 VATGIVTKVLG 429 (463)
Q Consensus 419 ig~G~V~~~~~ 429 (463)
+|+|.|+++++
T Consensus 399 ig~G~V~~~~~ 409 (409)
T CHL00071 399 VGAGVVSKILK 409 (409)
T ss_pred EEEEEEEEecC
Confidence 99999998863
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.1e-70 Score=562.63 Aligned_cols=379 Identities=28% Similarity=0.445 Sum_probs=338.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhh---H------------hcCccccccccccCCChhhhhcCceEEeeEEEEec
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVA---A------------KIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~---~------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 105 (463)
.+++++||+++||+|||||||+++|+... . +.++.++.+.|.+|..++|+++|+|++.+...|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 46899999999999999999999996321 1 23445566678999999999999999999999999
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCcc----
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLV---- 174 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~~---- 174 (463)
.++.++|+|||||++|+++|+.+++.+|++||||||.+|.+ +||++|+.++..+|+|++||++||||+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999854 7999999999999999899999999986
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCC-----CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeee
Q psy3124 175 DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPI 249 (463)
Q Consensus 175 ~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~-----~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I 249 (463)
+..+++++.++++.++++.|++.+++|++|+||++|.+.. .+||.+ ..|+++|.+ ++.|.++.+.||+|+|
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g---~tLl~~l~~-i~~p~~~~~~plr~~I 238 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG---PTLLEALDQ-INEPKRPSDKPLRLPL 238 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccch---HHHHHHHhh-cCCCccccCCCcEEEE
Confidence 2567889999999999999998778999999999986532 478854 468888877 7778888899999999
Q ss_pred EEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEec
Q psy3124 250 DNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAK 329 (463)
Q Consensus 250 ~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 329 (463)
+++|+++|.|+|+.|+|.+|.|++||+|.++|.+ ..++|++|++++.++++|.|||+|++.|++++..++++||+|++
T Consensus 239 ~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 239 QDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--LTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--CEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 9999999999999999999999999999999976 45899999999999999999999999999998899999999998
Q ss_pred CC-C-ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEEE
Q psy3124 330 AD-T-LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTVT 395 (463)
Q Consensus 330 ~~-~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v~ 395 (463)
+. . ++.+++|+|+|.||+++ .+|..||++++|+|+.+++|+|..+ ..+|.+|++||.|.|+
T Consensus 317 ~~~~p~~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~ 391 (447)
T PLN00043 317 SKDDPAKEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVK 391 (447)
T ss_pred CCCCCCccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEE
Confidence 73 3 46799999999999874 7899999999999999999987621 1235799999999999
Q ss_pred EEeceEEeecc------CCeEEEEeCCceEEEEEEeeeccC
Q psy3124 396 MTLLYKMYLSK------GQTFTIRENNKLVATGIVTKVLGN 430 (463)
Q Consensus 396 ~~~~~p~~~~~------~~rfilr~~~~tig~G~V~~~~~~ 430 (463)
|++.+|+|+++ ++||+|||++.|+|+|.|+++...
T Consensus 392 i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~ 432 (447)
T PLN00043 392 MIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKK 432 (447)
T ss_pred EEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEecc
Confidence 99999999997 589999999999999999998753
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=3.4e-70 Score=559.42 Aligned_cols=382 Identities=30% Similarity=0.462 Sum_probs=340.7
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
..+++++||+++||+|||||||+++|+... .+.|++++++.|.+|..++|+++|+|++++...|+
T Consensus 2 ~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~ 81 (446)
T PTZ00141 2 GKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (446)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc
Confidence 346789999999999999999999996421 12356667777899999999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCc--c-
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADL--V- 174 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~--~- 174 (463)
++++.++|+|||||++|.++|+.+++.+|+++|||||.+|++ +||++|+.++..+|+|++||++||||. +
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccch
Confidence 999999999999999999999999999999999999999984 799999999999999999999999994 3
Q ss_pred -cHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceee
Q psy3124 175 -DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILP 248 (463)
Q Consensus 175 -~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~ 248 (463)
++++++++.+++.++|+..++...++|++|+||.+|.+. ..+||.+ ..|+++|.. +++|.++.++||+|+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G---~tL~~~l~~-~~~~~~~~~~p~r~~ 237 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKG---PTLLEALDT-LEPPKRPVDKPLRLP 237 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccch---HHHHHHHhC-CCCCCcCCCCCeEEE
Confidence 567899999999999999999877899999999998553 2478854 467888876 566777889999999
Q ss_pred eEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 249 IDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 249 I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
|+++|+++|.|+|++|+|.+|.|++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++||+|+
T Consensus 238 I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 238 LQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred EEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 99999999999999999999999999999999976 4589999999999999999999999999999999999999999
Q ss_pred cCC--CccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEE
Q psy3124 329 KAD--TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTV 394 (463)
Q Consensus 329 ~~~--~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v 394 (463)
+++ +++.+++|+|+|.||+++ ++|..||++++|+++.+++|+|... ..++++|++|+.+.|
T Consensus 316 ~~~~~p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v 390 (446)
T PTZ00141 316 DSKNDPAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIV 390 (446)
T ss_pred cCCCCCCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEE
Confidence 974 346789999999999974 6899999999999999999998733 123578999999999
Q ss_pred EEEeceEEeecc------CCeEEEEeCCceEEEEEEeeeccCCC
Q psy3124 395 TMTLLYKMYLSK------GQTFTIRENNKLVATGIVTKVLGNME 432 (463)
Q Consensus 395 ~~~~~~p~~~~~------~~rfilr~~~~tig~G~V~~~~~~~~ 432 (463)
+|++.+|+|+++ ++||+||++|+|+|+|.|+++....-
T Consensus 391 ~l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~~ 434 (446)
T PTZ00141 391 KMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKEG 434 (446)
T ss_pred EEEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEecCCC
Confidence 999999999995 58999999999999999999885443
No 13
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.3e-67 Score=539.02 Aligned_cols=379 Identities=32% Similarity=0.537 Sum_probs=339.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhh---h------------HhcCccccccccccCCChhhhhcCceEEeeEEEEec
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKV---A------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~---~------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 105 (463)
.+++++||+++||+|||||||+++|+.. + .+.|+.++.+.|.+|..++|+++|+|++.....+++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 4678999999999999999999999632 1 123666677778999999999999999999999999
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCC--CCcHHHHHHHHHHHHcCCCeEEEEEeccCccc--HHHHHH
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASE--GQMPQTREHLLLSKQIGIDNVVVYVNKADLVD--REIMEL 181 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~--g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~~~~~~ 181 (463)
++..++|+|||||++|.+++..++..+|++|+|||+++ +...|+++|+.++..++++++++++||+|+.+ ++.++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence 99999999999999999999999999999999999999 89999999999999999988999999999974 456777
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecC
Q psy3124 182 VELEVRDVLTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVP 256 (463)
Q Consensus 182 i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~ 256 (463)
+.+++.++++.+++....+|++++||+++.+. ..+||.+ ..|+++|.. +++|.++.++||+|+|+++|.++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g---~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~ 237 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNG---PTLLEALDN-LKPPEKPTDKPLRIPIQDVYSIS 237 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccH---HHHHHHHhc-CCCCccccCCCcEEEEEEEEeeC
Confidence 88899999998888766789999999998553 3478854 678888877 78888888999999999999999
Q ss_pred CCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCC-ccc
Q psy3124 257 GRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-LQM 335 (463)
Q Consensus 257 ~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~ 335 (463)
|.|+|++|+|.+|+|++||+|.++|.+ ..++|++|+.++.+++.|.|||+|+++|++++..++++||+|++++. ++.
T Consensus 238 g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~ 315 (425)
T PRK12317 238 GVGTVPVGRVETGVLKVGDKVVFMPAG--VVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTV 315 (425)
T ss_pred CCeEEEEEEEeeccEecCCEEEECCCC--CeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCc
Confidence 999999999999999999999999976 45899999999999999999999999999998899999999999874 567
Q ss_pred cceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC------------CCCccccCCCEEEEEEEeceEEe
Q psy3124 336 HNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG------------EDDGMLMPGEHGTVTMTLLYKMY 403 (463)
Q Consensus 336 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~------------~~~~~l~~g~~~~v~~~~~~p~~ 403 (463)
+++|+|+|.||+++ ++|+.||++++|+++.+++|+|..+. .++.+|++||.+.|+|+|.+|+|
T Consensus 316 ~~~f~a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~ 390 (425)
T PRK12317 316 AEEFTAQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLV 390 (425)
T ss_pred ccEEEEEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeE
Confidence 89999999999874 68999999999999999999998321 23579999999999999999999
Q ss_pred eccC------CeEEEEeCCceEEEEEEeeeccC
Q psy3124 404 LSKG------QTFTIRENNKLVATGIVTKVLGN 430 (463)
Q Consensus 404 ~~~~------~rfilr~~~~tig~G~V~~~~~~ 430 (463)
++++ +||+||++|+|+|+|.|+++.+.
T Consensus 391 ~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 391 IEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred EEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 9987 89999999999999999998864
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.4e-66 Score=531.30 Aligned_cols=379 Identities=32% Similarity=0.528 Sum_probs=338.8
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhh---h------------HhcCccccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKV---A------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~---~------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
..+++++||+++||+|||||||+++|+.. . ...|..++.+.|.+|+.++|+++|+|++.....+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 34678999999999999999999999642 1 13456667777899999999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC---CcHHHHHHHHHHHHcCCCeEEEEEeccCcc--cHHHH
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG---QMPQTREHLLLSKQIGIDNVVVYVNKADLV--DREIM 179 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g---~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~~~~~ 179 (463)
+++..++|+|||||++|.+++..++..+|+++||||++++ ...|+.+|+.++..++++++|||+||+|+. +++.+
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHH
Confidence 9999999999999999999999999999999999999999 778999999999999988899999999997 45677
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEe
Q psy3124 180 ELVELEVRDVLTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIG 254 (463)
Q Consensus 180 ~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~ 254 (463)
+.+.++++++++..++....+|++++||+++.+. ..+||.+ .+|+++|.. +++|.++.+.||+|+|+++|+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g---~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~ 237 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKG---KTLLEALDA-LEPPEKPTDKPLRIPIQDVYS 237 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccc---hHHHHHHhc-CCCCCCccCCCcEEEEEEEEe
Confidence 8888999999999888766789999999998553 3479864 468888876 677777888999999999999
Q ss_pred cCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCC-c
Q psy3124 255 VPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-L 333 (463)
Q Consensus 255 ~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 333 (463)
++|.|+|++|+|.+|.|++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++||+|++++. +
T Consensus 238 ~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~ 315 (426)
T TIGR00483 238 ITGVGTVPVGRVETGVLKPGDKVVFEPAG--VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPP 315 (426)
T ss_pred cCCCeEEEEEEEccceeecCCEEEECCCC--cEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCC
Confidence 99999999999999999999999999976 46899999999999999999999999999999999999999999864 5
Q ss_pred cccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEEEEEeceE
Q psy3124 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTVTMTLLYK 401 (463)
Q Consensus 334 ~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v~~~~~~p 401 (463)
+++++|+|+|.||+++ ++|+.||++++|+|+.+++|+|... ..++.+|++||.+.|+|+|.+|
T Consensus 316 ~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 390 (426)
T TIGR00483 316 KVAKEFTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKP 390 (426)
T ss_pred ceeeEEEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCe
Confidence 6789999999999874 6899999999999999999999732 1235799999999999999999
Q ss_pred Eeecc------CCeEEEEeCCceEEEEEEeeecc
Q psy3124 402 MYLSK------GQTFTIRENNKLVATGIVTKVLG 429 (463)
Q Consensus 402 ~~~~~------~~rfilr~~~~tig~G~V~~~~~ 429 (463)
+|+++ ++||+||++|+|+|+|.|+++.+
T Consensus 391 i~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~ 424 (426)
T TIGR00483 391 MVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDP 424 (426)
T ss_pred eEEeecccCCCCccEEEEECCCEEEEEEEEEeee
Confidence 99997 68999999999999999998764
No 15
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.2e-61 Score=494.00 Aligned_cols=352 Identities=28% Similarity=0.376 Sum_probs=307.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe---------------c
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS---------------T 105 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---------------~ 105 (463)
..+++++|+++||+|||||||+++|++. ..|++++|++||+|+++++..+. .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 4567899999999999999999999975 56889999999999998776441 1
Q ss_pred C------------------CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCCeEEE
Q psy3124 106 N------------------TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-QMPQTREHLLLSKQIGIDNVVV 166 (463)
Q Consensus 106 ~------------------~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-~~~qt~e~l~~~~~l~ip~iiv 166 (463)
. .+.++|+|||||++|+++|+++++.+|+++|||||.+| +++||+||+.++..++++++||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 0 24789999999999999999999999999999999997 7999999999999999999999
Q ss_pred EEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCce
Q psy3124 167 YVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFI 246 (463)
Q Consensus 167 vvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~ 246 (463)
|+||||+++.+..++..++++++++... ....|++++||+++ .++++|+++|...+|.|.++.+.||+
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~--~~~~~iipVSA~~G----------~nI~~Ll~~L~~~lp~~~r~~~~p~r 244 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVKGTI--ADNAPIIPISAQLK----------YNIDVVLEYICTQIPIPKRDLTSPPR 244 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHhhc--cCCCeEEEeeCCCC----------CCHHHHHHHHHhhCCCCCCCCCCCcE
Confidence 9999999987777777788888887643 24689999999999 99999999999879988888899999
Q ss_pred eeeEEEEecCC--------CceEEEEEEecccccCCCEEEEecCCc-------e----eeEEEEEEeeccccceEEccCC
Q psy3124 247 LPIDNAIGVPG--------RGSVCIGTIKQGTIKRNDEAELLGFNS-------K----FTCTISEIQVFQKKVSEARAGD 307 (463)
Q Consensus 247 ~~I~~~~~~~~--------~G~vv~G~v~~G~l~~gd~v~i~~~~~-------~----~~~~V~sI~~~~~~v~~a~aG~ 307 (463)
++|+++|.+.+ +|+|++|+|.+|++++||+|.+.|.+. + ..++|++|+.++.++++|.|||
T Consensus 245 ~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~ 324 (460)
T PTZ00327 245 MIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGG 324 (460)
T ss_pred EEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCC
Confidence 99999998864 799999999999999999999998641 1 3579999999999999999999
Q ss_pred eEEEEec---cccccCcccceEEecCCCc-cccceEEEEEEEeccC-----CCCC----CccccCCcEEEEEEEEEEeeE
Q psy3124 308 NVGVLLR---NVKLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKA-----EGGR----YKPITSKYIQQMFSRTWNVQV 374 (463)
Q Consensus 308 ~v~l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~-----~~~~----~~~i~~g~~~~~~~~~~~~~~ 374 (463)
+|+++|+ +++..++.+||+|++++.+ +.++.|+|++.||++. ++++ .++|+.||++++|+++.++.|
T Consensus 325 ~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~ 404 (460)
T PTZ00327 325 LIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGG 404 (460)
T ss_pred EEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEE
Confidence 9999987 6777899999999998754 5667999999999873 1211 268999999999999999999
Q ss_pred EEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEe---C-CceEEEEEEee
Q psy3124 375 RLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRE---N-NKLVATGIVTK 426 (463)
Q Consensus 375 ~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~---~-~~tig~G~V~~ 426 (463)
+|.....+ . .++|+|.+|+|+++|+||+||+ . ++|+|+|.|.+
T Consensus 405 ~i~~i~~~--------~-~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 405 RVVGIKDD--------G-IAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEEEeCCC--------e-EEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 99866432 1 7889999999999999999985 2 57999999985
No 16
>KOG0458|consensus
Probab=100.00 E-value=2.7e-62 Score=488.03 Aligned_cols=378 Identities=27% Similarity=0.382 Sum_probs=340.7
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhh---------------hHhcCccccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKV---------------AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~---------------~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
...+++++.+++||+|||||||+++|+.. ....|+.++.+.|.+|...+||+||+|+++....|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34568999999999999999999998522 244588889999999999999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCcc--c
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLV--D 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~~--~ 175 (463)
...+.++|+|+|||.+|+++|+.|+.+||+++|||||+.|.+ +||+||+.+++.+|+.++||++||||++ +
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 999999999999999999999999999999999999998765 7999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHH-HHcCCCCCCCcEEEccchhhccCC--------CCCCCCccHHHHHHHhhhcCCCCCCCCCCCce
Q psy3124 176 REIMELVELEVRDVL-TAYGYDGDNTPFVFGSALLALQGD--------SSELGEPSIHRLLDALDKHIPNPVRDITSPFI 246 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l-~~~g~~~~~~pvi~~Sa~~~~~~~--------~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~ 246 (463)
+++|+++++.+..+| +.+||....+.|+|+|++.|.|.. ..||.++ .||+.|+. +..|.++.+.||+
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp---~LL~~id~-~~~p~~~~~kPl~ 407 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGP---TLLSQIDS-FKIPERPIDKPLR 407 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCC---hHHHHHhh-ccCCCCcccCCeE
Confidence 999999999999999 889999888999999999995532 1498776 57788887 7778888999999
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceE
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGML 326 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 326 (463)
+.|.+++..++.|..++|+|++|.|++||+|+++++. ..++|++|.+++.+...|.|||.|.+.|.++..+.+..|++
T Consensus 408 ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i 485 (603)
T KOG0458|consen 408 LTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDI 485 (603)
T ss_pred EEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEEEEeeecCCCcceeEeeCCEEEEecCccChhhccccee
Confidence 9999999999999999999999999999999999865 45899999999999999999999999999999999999999
Q ss_pred Ee-cCCC-ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEE
Q psy3124 327 LA-KADT-LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHG 392 (463)
Q Consensus 327 l~-~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~ 392 (463)
++ .+.. .+.+..|.+++.+|+. ..||..|.++.+|+|+..++|++... ...+++|.+|+.|
T Consensus 486 ~~~~~~~~i~~~~~f~~~~~~f~~-----~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a 560 (603)
T KOG0458|consen 486 ADSGPQFPISKTTRFVARITTFDI-----NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSA 560 (603)
T ss_pred eecCCCccccceeEEEEEEEEeec-----cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCcee
Confidence 99 5554 4667899999999986 37999999999999999998887621 1235789999999
Q ss_pred EEEEEeceEEeeccC------CeEEEEeCCceEEEEEEeeec
Q psy3124 393 TVTMTLLYKMYLSKG------QTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 393 ~v~~~~~~p~~~~~~------~rfilr~~~~tig~G~V~~~~ 428 (463)
.++++..+|+|++.+ +||++|..|+|||+|+|+++.
T Consensus 561 ~vele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 561 IVELETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred eeeccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999999999999854 899999999999999999874
No 17
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=3.4e-61 Score=496.61 Aligned_cols=377 Identities=26% Similarity=0.324 Sum_probs=321.8
Q ss_pred ccccCCCceeEEEEEcCCCCCHHHHHHHHHhhh---H------------hcCc--cccccccccCCChhhhhcCceEEee
Q psy3124 37 ASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVA---A------------KIGK--SKFITFDQIDRAPEEKARGITINIA 99 (463)
Q Consensus 37 ~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~---~------------~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~ 99 (463)
...+..++.+||+++||+|||||||+++|+... . ..|. .++.+.|.+|..++|++||+|++..
T Consensus 19 ~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~ 98 (474)
T PRK05124 19 LHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVA 98 (474)
T ss_pred HhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEee
Confidence 344456788999999999999999999995331 1 1343 2455678999999999999999999
Q ss_pred EEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc--cHH
Q psy3124 100 HVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV--DRE 177 (463)
Q Consensus 100 ~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~~~ 177 (463)
...++++++.++|+|||||++|.++|..++..+|++++||||.+|+.+||++|+.++..++++++||++||||++ +++
T Consensus 99 ~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 99 YRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred EEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhH
Confidence 999999999999999999999999999999999999999999999999999999999999998899999999998 455
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEE
Q psy3124 178 IMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNA 252 (463)
Q Consensus 178 ~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~ 252 (463)
.++++.+++..+++.+++. ..+|++|+||+++.+. ..+||.+ ..|+++|.. +++|.++.+.||+|+|+++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G---~tLl~~L~~-i~~~~~~~~~p~r~~I~~v 253 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSG---PTLLEVLET-VDIQRVVDAQPFRFPVQYV 253 (474)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccch---hhHHHHHhh-cCCCCCCCCCCceeeEEEE
Confidence 6777888888888777642 3589999999998653 2479854 456776665 6777777889999999999
Q ss_pred EecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCC
Q psy3124 253 IGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 253 ~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
+........+.|+|.+|+|++||+|.++|.+ ..++|++|+.++.+++.|.|||+|+++|++ ..++++||+||+++.
T Consensus 254 ~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 254 NRPNLDFRGYAGTLASGVVKVGDRVKVLPSG--KESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADE 329 (474)
T ss_pred EecCCcccceEEEEEeEEEecCCEEEEecCC--ceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCC
Confidence 8753322237899999999999999999976 458999999999999999999999999984 578999999999875
Q ss_pred -ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC----------CCCccccCCCEEEEEEEeceE
Q psy3124 333 -LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG----------EDDGMLMPGEHGTVTMTLLYK 401 (463)
Q Consensus 333 -~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------~~~~~l~~g~~~~v~~~~~~p 401 (463)
++++++|+|++.||+. ++|..||++++|+|+.+++|+|..+. .++..|++|+.+.|+|++.+|
T Consensus 330 ~~~~~~~f~a~i~~l~~------~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~p 403 (474)
T PRK05124 330 ALQAVQHASADVVWMAE------QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEP 403 (474)
T ss_pred CCccceEEEEEEEEeCC------cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCe
Confidence 5789999999999972 58999999999999999999998432 124689999999999999999
Q ss_pred EeeccC------CeEEEE--eCCceEEEEEEeeec
Q psy3124 402 MYLSKG------QTFTIR--ENNKLVATGIVTKVL 428 (463)
Q Consensus 402 ~~~~~~------~rfilr--~~~~tig~G~V~~~~ 428 (463)
+|++++ +||+|| +++.|+|+|.|+++.
T Consensus 404 v~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 404 LVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 999987 569994 678999999999866
No 18
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=6.3e-61 Score=487.70 Aligned_cols=363 Identities=27% Similarity=0.367 Sum_probs=314.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh---hHh------------cCcc--ccccccccCCChhhhhcCceEEeeEEEEecCCe
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV---AAK------------IGKS--KFITFDQIDRAPEEKARGITINIAHVEYSTNTR 108 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~---~~~------------~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 108 (463)
+||+++||+|||||||+++|+.. ..+ .|.. ++.+.|.+|+.++|++||+|++.....+++.++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999532 111 3443 567788999999999999999999999999999
Q ss_pred eEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc--HHHHHHHHHHH
Q psy3124 109 HYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEV 186 (463)
Q Consensus 109 ~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~~~~~~i~~~i 186 (463)
+++|+|||||++|.++|..++..+|+++|||||.+|+++||++|+.++..++++++||++||||+++ ++.++++.+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998999999999984 55677788888
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCC-----CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceE
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSV 261 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~-----~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~v 261 (463)
.++++.+++. .+|++++||+++.+.. .+||.+ ..|+++|.. ++.|.+..+.||+|+|+++|+....+.-
T Consensus 161 ~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g---~tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g 234 (406)
T TIGR02034 161 LAFAEQLGFR--DVTFIPLSALKGDNVVSRSESMPWYSG---PTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRG 234 (406)
T ss_pred HHHHHHcCCC--CccEEEeecccCCCCcccccCCCccch---hHHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEE
Confidence 8888887763 5899999999985533 468854 456677766 5667777889999999999875443334
Q ss_pred EEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCC-ccccceEE
Q psy3124 262 CIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-LQMHNRYE 340 (463)
Q Consensus 262 v~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~ 340 (463)
+.|+|.+|+|++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++ ..++++||+|++++. +++++.|+
T Consensus 235 ~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~ 310 (406)
T TIGR02034 235 YAGTIASGSVHVGDEVVVLPSG--RSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFA 310 (406)
T ss_pred EEEEEecceeecCCEEEEeCCC--cEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEE
Confidence 7899999999999999999976 558999999999999999999999999984 578999999999976 57899999
Q ss_pred EEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC----------CCCccccCCCEEEEEEEeceEEeeccC---
Q psy3124 341 AEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG----------EDDGMLMPGEHGTVTMTLLYKMYLSKG--- 407 (463)
Q Consensus 341 a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------~~~~~l~~g~~~~v~~~~~~p~~~~~~--- 407 (463)
|++.+|++ .+|+.||++++|+|+.+++|++.... .++..+++|+.+.|+|++++|+|++.+
T Consensus 311 a~i~~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~ 384 (406)
T TIGR02034 311 ATLVWMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAEN 384 (406)
T ss_pred EEEEEeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCC
Confidence 99999984 48999999999999999999998432 124688999999999999999999986
Q ss_pred ---CeEEE--EeCCceEEEEEE
Q psy3124 408 ---QTFTI--RENNKLVATGIV 424 (463)
Q Consensus 408 ---~rfil--r~~~~tig~G~V 424 (463)
+||+| |++++|+|+|.|
T Consensus 385 ~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 385 RTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred CcceeEEEEECCCCCeEEEEeC
Confidence 59999 667899999986
No 19
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=8.6e-62 Score=460.27 Aligned_cols=364 Identities=27% Similarity=0.434 Sum_probs=328.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec----------------
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---------------- 105 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------- 105 (463)
..++++++++||+|||||||+++|+....++|.+..+. .+|.+++|.++|.|.++++.-|..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~--~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRS--YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhh--hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 46789999999999999999999988888889888775 589999999999999887654422
Q ss_pred -------CCeeEEEEeCCChhhhHHHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH
Q psy3124 106 -------NTRHYAHTDCPGHADYIKNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 106 -------~~~~i~liDtPGh~~f~~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~ 176 (463)
.++-+.|+||-||+.|+.++++|+ ...|+.+|||.|++|++.+|+|||.++.++++| +||++||+|+.+.
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~d 270 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVPD 270 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCcH
Confidence 246788999999999999999998 458999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCC--------------------CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 177 EIMELVELEVRDVLTAYGY--------------------DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 177 ~~~~~i~~~i~~~l~~~g~--------------------~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
++++.+.+++...|+..+- ....+|++.+|+.++ +|++-|.+++.. +|.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg----------~GldlL~e~f~~-Lp~ 339 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG----------EGLDLLDEFFLL-LPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC----------ccHHHHHHHHHh-CCc
Confidence 9999999999999887542 112489999999999 888766666554 776
Q ss_pred CCC-CCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEec--CCceeeEEEEEEeeccccceEEccCCeEEEEe
Q psy3124 237 PVR-DITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLG--FNSKFTCTISEIQVFQKKVSEARAGDNVGVLL 313 (463)
Q Consensus 237 p~~-~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~--~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l 313 (463)
..+ +...||+|+|+++|++.|+|+|+.|+|.+|.++.||++++.| .|++.+++|+||++|+.++++|.||.++++++
T Consensus 340 rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al 419 (527)
T COG5258 340 RRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIAL 419 (527)
T ss_pred ccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEe
Confidence 533 567899999999999999999999999999999999999987 47889999999999999999999999999999
Q ss_pred ccccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEE
Q psy3124 314 RNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393 (463)
Q Consensus 314 ~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~ 393 (463)
+++..+++++||+|+.+..|++.++|+|++.+|.|| +.|+.||.+.+|.-++++.++++.++. ++|++||.+.
T Consensus 420 ~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~~id~--~~L~~GD~g~ 492 (527)
T COG5258 420 KGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFEEIDK--GFLMPGDRGV 492 (527)
T ss_pred cccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEEEccc--ccccCCCcce
Confidence 999999999999999886789999999999999995 789999999999999999999987754 7999999999
Q ss_pred EEEEec-eEEeeccCCeEEEEeCCceEEEEEEeee
Q psy3124 394 VTMTLL-YKMYLSKGQTFTIRENNKLVATGIVTKV 427 (463)
Q Consensus 394 v~~~~~-~p~~~~~~~rfilr~~~~tig~G~V~~~ 427 (463)
++++|. +|.++++|++|+||++ ++.|+|.|+.+
T Consensus 493 vr~~fkyrP~~v~eGQ~fvFReG-rskgvG~v~~~ 526 (527)
T COG5258 493 VRMRFKYRPHHVEEGQKFVFREG-RSKGVGRVIRV 526 (527)
T ss_pred EEEEEEeCchhhccCcEEEEecC-CCccceEEecc
Confidence 999996 8999999999999985 99999999875
No 20
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-61 Score=451.37 Aligned_cols=373 Identities=27% Similarity=0.378 Sum_probs=320.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh---hhHhc-----Cc---------cccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITK---VAAKI-----GK---------SKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~---~~~~~-----g~---------~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
.+..+++..||++|.|||||+++|+. .+.+. .+ ...-..-.+|-+.+||+.|+||++++..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45689999999999999999999952 21111 11 112223357888999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc--cHHHHHHH
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV--DREIMELV 182 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~~~~~~~i 182 (463)
++.+++++.|||||+.|.+||.+|++.||++|++|||..|+..||++|..++..+||+|+++++|||||+ +++.|+.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 68999999
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEccchhhcc-----CCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecC-
Q psy3124 183 ELEVRDVLTAYGYDGDNTPFVFGSALLALQ-----GDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVP- 256 (463)
Q Consensus 183 ~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~-----~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~- 256 (463)
..+...+.+++++.. ..++|+||+.|-| ..+|||.++.+.++|+.+. .......+||||||+.+.+..
T Consensus 163 ~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~----i~~~~~~~~~RfPVQ~V~Rp~~ 236 (431)
T COG2895 163 VADYLAFAAQLGLKD--VRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVE----IADDRSAKAFRFPVQYVNRPNL 236 (431)
T ss_pred HHHHHHHHHHcCCCc--ceEEechhccCCcccccccCCCcccCccHHHHHhhcc----ccccccccceeeceEEecCCCC
Confidence 999999999999864 4689999999955 3468999887666666543 344455678999999998864
Q ss_pred -CCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCC-cc
Q psy3124 257 -GRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-LQ 334 (463)
Q Consensus 257 -~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~ 334 (463)
.+| +.|+|.+|++++||+|.++|+| ..++|+.|..++.++++|.+|+.|++.|. +..++.|||+|+..+. +.
T Consensus 237 dfRG--yaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~ 310 (431)
T COG2895 237 DFRG--YAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPA 310 (431)
T ss_pred cccc--cceeeeccceecCCeEEEccCC--CeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcc
Confidence 355 8999999999999999999988 55899999999999999999999999997 6789999999999875 56
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC----------CCCCccccCCCEEEEEEEeceEEee
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP----------GEDDGMLMPGEHGTVTMTLLYKMYL 404 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----------~~~~~~l~~g~~~~v~~~~~~p~~~ 404 (463)
+++.|.|.|+||+. .|+.+|..+.+-.++..+.++|.-. ....+.|..|+.+.|++.+.+|+++
T Consensus 311 ~~~~f~A~vvWm~~------~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~f 384 (431)
T COG2895 311 VADAFDADVVWMDE------EPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAF 384 (431)
T ss_pred hhhhcceeEEEecC------CCCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceee
Confidence 79999999999985 4899999999999988888887621 1234689999999999999999999
Q ss_pred ccC------CeEEEEe--CCceEEEEEEeeeccCCC
Q psy3124 405 SKG------QTFTIRE--NNKLVATGIVTKVLGNME 432 (463)
Q Consensus 405 ~~~------~rfilr~--~~~tig~G~V~~~~~~~~ 432 (463)
+++ +.|||.| .+.|+|+|+|.+-+...-
T Consensus 385 d~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~~~~ 420 (431)
T COG2895 385 DAYAENRATGSFILIDRLTNGTVGAGMILASLSANT 420 (431)
T ss_pred cccccCcccccEEEEEcCCCCceeceeeechhhhcC
Confidence 987 7999977 467999999998765333
No 21
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=7.6e-60 Score=505.31 Aligned_cols=405 Identities=24% Similarity=0.329 Sum_probs=342.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhh---H------------hcCc--cccccccccCCChhhhhcCceEEeeEEEE
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVA---A------------KIGK--SKFITFDQIDRAPEEKARGITINIAHVEY 103 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~---~------------~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 103 (463)
..++.++|+++||+|||||||+++|+... . ..|. .++...|.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44678899999999999999999996432 1 2343 45556688999999999999999999999
Q ss_pred ecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc--cHHHHHH
Q psy3124 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV--DREIMEL 181 (463)
Q Consensus 104 ~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~~~~~~~ 181 (463)
++.+..++|+|||||++|.++|..++..+|+++||||+.+|+.+||++|+.++..++++++||++||||++ +++.+++
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999998 3566778
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEccchhhccCC-----CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecC
Q psy3124 182 VELEVRDVLTAYGYDGDNTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVP 256 (463)
Q Consensus 182 i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~-----~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~ 256 (463)
+.+++.++++.+++ ..+|++|+||+++.+.. .+||.+ .+|+++|.. ++.|.+..++||+|+|+++|+..
T Consensus 180 i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g---~tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~ 253 (632)
T PRK05506 180 IVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSARMPWYEG---PSLLEHLET-VEIASDRNLKDFRFPVQYVNRPN 253 (632)
T ss_pred HHHHHHHHHHHcCC--CCccEEEEecccCCCccccccCCCcccH---hHHHHHHhc-CCCCCCcCCCCceeeEEEEEecC
Confidence 88888888888887 35789999999985532 478843 567777776 56666667899999999998754
Q ss_pred CCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCC-ccc
Q psy3124 257 GRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-LQM 335 (463)
Q Consensus 257 ~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~ 335 (463)
..+..+.|+|.+|+|++||+|.++|.+ ..++|++|++++.++++|.|||+|+++|++ ..++++||+||+++. +++
T Consensus 254 ~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~ 329 (632)
T PRK05506 254 LDFRGFAGTVASGVVRPGDEVVVLPSG--KTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEV 329 (632)
T ss_pred CCceEEEEEEecceeecCCEEEEcCCC--ceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcc
Confidence 222337899999999999999999976 468999999999999999999999999984 568999999999975 567
Q ss_pred cceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC----------CCCccccCCCEEEEEEEeceEEeec
Q psy3124 336 HNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG----------EDDGMLMPGEHGTVTMTLLYKMYLS 405 (463)
Q Consensus 336 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------~~~~~l~~g~~~~v~~~~~~p~~~~ 405 (463)
+++|+|++.||+++ ++.+||++++|+|+.+++|+|.... .++.+|++|+.+.|+|++.+|+|++
T Consensus 330 ~~~f~a~i~~l~~~------~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e 403 (632)
T PRK05506 330 ADQFDATVVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFD 403 (632)
T ss_pred eeEEEEEEEEeccc------ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeee
Confidence 99999999999853 6779999999999999999997321 2357899999999999999999999
Q ss_pred cC------CeEEEEe--CCceEEEEEEeeeccCCCCcccccccchhhhhhhccCCCCCceeeeecC
Q psy3124 406 KG------QTFTIRE--NNKLVATGIVTKVLGNMEIPQHNLGMIRTKEVKTKRLPYGRTTSWWLQG 463 (463)
Q Consensus 406 ~~------~rfilr~--~~~tig~G~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
++ +||+||| ++.|+|+|.|++.++...+|+..... -.++..+.+.+ .++..+|++|
T Consensus 404 ~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~G 467 (632)
T PRK05506 404 PYARNRTTGSFILIDRLTNATVGAGMIDFALRRATNVHWQASD-VSREARAARKG-QKPATVWFTG 467 (632)
T ss_pred eccccccCceEEEEeccCCceEEEEEECccccccccccccccc-cCHHHHHHHhC-CCcEEEEecC
Confidence 87 5799955 88999999999999988777765554 33455554333 3689999988
No 22
>KOG0459|consensus
Probab=100.00 E-value=6.4e-60 Score=450.39 Aligned_cols=375 Identities=26% Similarity=0.395 Sum_probs=334.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHH---------------hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAIT---------------KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~---------------~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 106 (463)
.+.+.|++++||+|+||||+-+.|. ....+.++.++...|.+|+..+||++|.|+..+...|+++
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4678999999999999999999873 2234557788888999999999999999999999999999
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCcc----c
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLV----D 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~~----~ 175 (463)
.++++++|+|||..|.++|+.|+++||.++||++|+.|.+ +||+||..+++..++.++|+++||||-. +
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 9999999999999999999999999999999999988765 6999999999999999999999999987 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC-CcEEEccchhhccC------CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceee
Q psy3124 176 REIMELVELEVRDVLTAYGYDGDN-TPFVFGSALLALQG------DSSELGEPSIHRLLDALDKHIPNPVRDITSPFILP 248 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~g~~~~~-~pvi~~Sa~~~~~~------~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~ 248 (463)
.++++++++++..+|..+|+++.. +-++|+|+.+|.+. .-+||.++ .+++.|+. +|...|..++|++++
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp---~fl~~ld~-l~~~~R~~~GP~~~p 311 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGP---IFLEYLDE-LPHLERILNGPIRCP 311 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCC---ccceehhc-cCcccccCCCCEEee
Confidence 789999999999999999987543 66789999998653 23687655 46777777 888899999999999
Q ss_pred eEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 249 IDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 249 I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
|.+-|++ .|+|+.|+|+||++++||.+.++|.+ ..+.|.+|...+..++.+.||+++-+.|+|++.+++..|.+||
T Consensus 312 I~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk--~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~ 387 (501)
T KOG0459|consen 312 VANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNK--TNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILC 387 (501)
T ss_pred hhhhccc--cceEEEEEecccceecCCeEEEccCC--cceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEe
Confidence 9999874 67999999999999999999999976 4478999999999999999999999999999999999999999
Q ss_pred cCCCc-cccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC---C--------CCCccccCCCEEEEEE
Q psy3124 329 KADTL-QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP---G--------EDDGMLMPGEHGTVTM 396 (463)
Q Consensus 329 ~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~---~--------~~~~~l~~g~~~~v~~ 396 (463)
+++++ ++.+.|+|+|.+|+|. .-|..||.+++|+|+.-..|.|.++ + ..+.+++.|+.++++|
T Consensus 388 ~~~n~~~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl 462 (501)
T KOG0459|consen 388 SPNNPCKSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARL 462 (501)
T ss_pred cCCCccccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEE
Confidence 99875 8999999999999984 5678999999999999888877642 1 1367999999999999
Q ss_pred EeceEEeeccC------CeEEEEeCCceEEEEEEeeecc
Q psy3124 397 TLLYKMYLSKG------QTFTIRENNKLVATGIVTKVLG 429 (463)
Q Consensus 397 ~~~~p~~~~~~------~rfilr~~~~tig~G~V~~~~~ 429 (463)
+...|+|++.+ +||.|||+|+|||+|.|+++.+
T Consensus 463 ~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 463 ETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ecCCcEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99999999975 7999999999999999998763
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=3.9e-58 Score=485.41 Aligned_cols=340 Identities=30% Similarity=0.433 Sum_probs=304.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChhhhHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~f~~~~ 125 (463)
.|+++||+|||||||+++|++. .+|+.++|+++|+|++..+..+.. ++..++|||||||++|.++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 5899999999999999999864 468889999999999998887765 45778999999999999999
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
+.++..+|++++|||+++|+++||++|+.++..+++|++|||+||||+++++.++.+.+++.++++..++. ..|++++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~--~~~ii~V 146 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA--EAKLFVT 146 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC--CCcEEEE
Confidence 99999999999999999999999999999999999998889999999998878888888999988877663 4789999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK 285 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~ 285 (463)
||+++ .|+++|+++|.. ++.|.++.++||+|+|+++|.++|.|+|++|+|.+|+|++||+|.+.|.+
T Consensus 147 SA~tG----------~gI~~L~~~L~~-~~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~-- 213 (614)
T PRK10512 147 AATEG----------RGIDALREHLLQ-LPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN-- 213 (614)
T ss_pred eCCCC----------CCCHHHHHHHHH-hhccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCC--
Confidence 99999 899999999988 55666667899999999999999999999999999999999999999865
Q ss_pred eeEEEEEEeeccccceEEccCCeEEEEecc-ccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCccccCCcEEE
Q psy3124 286 FTCTISEIQVFQKKVSEARAGDNVGVLLRN-VKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQ 364 (463)
Q Consensus 286 ~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~ 364 (463)
..++|++|+.++.++++|.|||+|+++|++ ++..++++||+|++++++.++..+.+. +.. .+|++.|+.++
T Consensus 214 ~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~~---l~~-----~~~l~~~~~~~ 285 (614)
T PRK10512 214 KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVE---LQT-----HTPLTQWQPLH 285 (614)
T ss_pred CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEEE---EcC-----CccCCCCCEEE
Confidence 458999999999999999999999999997 888999999999998777777766554 333 36899999999
Q ss_pred EEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEe--CCceEEEEEEeeeccCCC
Q psy3124 365 MFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRE--NNKLVATGIVTKVLGNME 432 (463)
Q Consensus 365 ~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~--~~~tig~G~V~~~~~~~~ 432 (463)
+|+|+.++.|+|...+ .+.++|.|++|+++..|+||+||+ ..+|+|+|+|+++.++..
T Consensus 286 ~~~gt~~~~~~i~~l~----------~~~~~l~l~~p~~~~~gdr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 286 IHHAASHVTGRVSLLE----------DNLAELVLDTPLWLADNDRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred EEEcccEEEEEEEEcC----------CeEEEEEECCcccccCCCEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 9999999999998762 358999999999999999999998 457999999999766544
No 24
>KOG0463|consensus
Probab=100.00 E-value=3.5e-60 Score=447.70 Aligned_cols=388 Identities=23% Similarity=0.334 Sum_probs=331.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE--EEEe----------------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH--VEYS---------------- 104 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~---------------- 104 (463)
.-..+|+++|++|+|||||++.|++...++|++.++. .+.++++|.+.|.|.++.. ..|+
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARq--kLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQ--KLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHH--HHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 3467999999999999999999999999999988773 5789999999999987632 2221
Q ss_pred -------cCCeeEEEEeCCChhhhHHHHHhhccc--CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 105 -------TNTRHYAHTDCPGHADYIKNMISGASQ--MDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 105 -------~~~~~i~liDtPGh~~f~~~~~~~~~~--aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
...+.++|||..||++|+++++.|+.. .|+.+|+|.|+.|+.++|+|||.++.++.+| +++|++|+|.++
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMCP 287 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMCP 287 (641)
T ss_pred cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccCc
Confidence 124668899999999999999999864 8999999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCC---------------------CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 176 REIMELVELEVRDVLTAYGYDG---------------------DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~g~~~---------------------~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+.+++..+.+..+++..|+.. ..+|+|.+|..+| .+++-|..+ .+.+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG----------~NL~LLkmF-LNll 356 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG----------TNLPLLKMF-LNLL 356 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC----------CChHHHHHH-Hhhc
Confidence 9999999999999998865421 3378888888888 776644444 4434
Q ss_pred CC-CCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecC--CceeeEEEEEEeeccccceEEccCCeEEE
Q psy3124 235 PN-PVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGF--NSKFTCTISEIQVFQKKVSEARAGDNVGV 311 (463)
Q Consensus 235 ~~-p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~--~~~~~~~V~sI~~~~~~v~~a~aG~~v~l 311 (463)
+. ....++.|..|+|+++|.++|+|+|+.|++.+|+|+.+|.+.+.|+ |.|.+..|+||++.+.+|..+.+||.+++
T Consensus 357 s~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASF 436 (641)
T KOG0463|consen 357 SLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASF 436 (641)
T ss_pred CcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhh
Confidence 33 2335678999999999999999999999999999999999999874 57888999999999999999999999999
Q ss_pred EeccccccCcccceEEecCC-CccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCC
Q psy3124 312 LLRNVKLKQIERGMLLAKAD-TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGE 390 (463)
Q Consensus 312 ~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~ 390 (463)
+|+.++..++++|||+.++. .|.++|.|+|+|.+|+|| +.|...|+.++|||++++++.|..++. ++|++||
T Consensus 437 ALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAtivsM~k--dcLRTGD 509 (641)
T KOG0463|consen 437 ALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATIVSMGK--DCLRTGD 509 (641)
T ss_pred HhhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeeeeecCh--hhhhcCC
Confidence 99999999999999999998 578999999999999995 789999999999999999999876643 7999999
Q ss_pred EEEEEEEec-eEEeeccCCeEEEEeCCceEEEEEEeeeccCCCCcccccccchhhhhhhccCCCCC
Q psy3124 391 HGTVTMTLL-YKMYLSKGQTFTIRENNKLVATGIVTKVLGNMEIPQHNLGMIRTKEVKTKRLPYGR 455 (463)
Q Consensus 391 ~~~v~~~~~-~p~~~~~~~rfilr~~~~tig~G~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (463)
.+.|+|+|. +|+|+++|+|++||++ ||.++|.|+++++.... .. +-+..+..+.|++++|.
T Consensus 510 ka~V~FrFIkqPEYir~gqrlVFREG-RTKAVGti~~~lp~~~~--sp-~r~Kp~~~~~~s~~kgs 571 (641)
T KOG0463|consen 510 KAKVQFRFIKQPEYIRPGQRLVFREG-RTKAVGTISSVLPQESL--SP-QRAKPKDGRQKSYGKGS 571 (641)
T ss_pred cceEEEEEecCcceecCCceEEeecc-cceeeeeeccccccccc--Cc-cCCCchhhhhhhcCCCC
Confidence 999999985 6999999999999985 99999999999987662 11 11223444555666654
No 25
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.9e-57 Score=462.09 Aligned_cols=350 Identities=32% Similarity=0.451 Sum_probs=300.2
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec--------------
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-------------- 105 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-------------- 105 (463)
..+++++||+++||+|||||||+++|++. .+|..++|+++|+|+++++..+.+
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 45678999999999999999999999653 478999999999999987543222
Q ss_pred C------------CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 106 N------------TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 106 ~------------~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
. .+.++|+|||||++|..+++.++..+|++++|+|++++. ..++.+|+..+..++++++++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 1 267999999999999999999999999999999999987 799999999999999987999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEE
Q psy3124 173 LVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNA 252 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~ 252 (463)
+++++......+++.++++... ...+|++++||+++ .++++|++.|...++.|.++.+.||+++|+++
T Consensus 151 l~~~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~ 218 (411)
T PRK04000 151 LVSKERALENYEQIKEFVKGTV--AENAPIIPVSALHK----------VNIDALIEAIEEEIPTPERDLDKPPRMYVARS 218 (411)
T ss_pred cccchhHHHHHHHHHHHhcccc--CCCCeEEEEECCCC----------cCHHHHHHHHHHhCCCCCCCCCCCceEEEEee
Confidence 9875544444556666665432 23589999999999 99999999999988888888899999999999
Q ss_pred EecCC--------CceEEEEEEecccccCCCEEEEecCCc----------eeeEEEEEEeeccccceEEccCCeEEEEec
Q psy3124 253 IGVPG--------RGSVCIGTIKQGTIKRNDEAELLGFNS----------KFTCTISEIQVFQKKVSEARAGDNVGVLLR 314 (463)
Q Consensus 253 ~~~~~--------~G~vv~G~v~~G~l~~gd~v~i~~~~~----------~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~ 314 (463)
|.+++ +|+|++|+|.+|+|++||.|.++|.+. +..++|++|+.++.++++|.|||+|+++|+
T Consensus 219 f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~ 298 (411)
T PRK04000 219 FDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTK 298 (411)
T ss_pred eeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEec
Confidence 98765 567999999999999999999998652 135799999999999999999999999986
Q ss_pred ---cccccCcccceEEecCCC-ccccceEEEEEEEeccCCCCC----CccccCCcEEEEEEEEEEeeEEEecCCCCCccc
Q psy3124 315 ---NVKLKQIERGMLLAKADT-LQMHNRYEAEIYLLSKAEGGR----YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGML 386 (463)
Q Consensus 315 ---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l 386 (463)
+++..++++||+|++++. ++.+++|+|++.+|++.++.+ +++|..||++++|+++.+++|+|...+.
T Consensus 299 ~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~----- 373 (411)
T PRK04000 299 LDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSARK----- 373 (411)
T ss_pred cCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcCC-----
Confidence 677789999999999976 457899999999998732222 3689999999999999999999987743
Q ss_pred cCCCEEEEEEEeceEEeeccCCeEEE--EeCC--ceEEEEEE
Q psy3124 387 MPGEHGTVTMTLLYKMYLSKGQTFTI--RENN--KLVATGIV 424 (463)
Q Consensus 387 ~~g~~~~v~~~~~~p~~~~~~~rfil--r~~~--~tig~G~V 424 (463)
+ .++++|.+|+|+++|+||+| |+++ |++|+|.|
T Consensus 374 ---~--~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~ 410 (411)
T PRK04000 374 ---D--EAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 410 (411)
T ss_pred ---c--EEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEe
Confidence 2 67788999999999999999 6887 89999987
No 26
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=2e-57 Score=462.31 Aligned_cols=347 Identities=33% Similarity=0.463 Sum_probs=298.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe--------------c---
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS--------------T--- 105 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--------------~--- 105 (463)
++.+||+++||+|||||||+++|++. .+|..++|+++|+|+++.+..+. +
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 56899999999999999999999753 47899999999999998755432 1
Q ss_pred ---------CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 106 ---------NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 106 ---------~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..+.++++|||||++|.++|..+++.+|+++|||||++|. ..||++|+..+..++++++++++||+|+++
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1467999999999999999999999999999999999998 899999999999999988999999999987
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEec
Q psy3124 176 REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV 255 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~ 255 (463)
.+...+..+++.++++... ...+|++++||+++ .++++|+++|...+|.|.++.+.||+|+|+++|.+
T Consensus 149 ~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v 216 (406)
T TIGR03680 149 KEKALENYEEIKEFVKGTV--AENAPIIPVSALHN----------ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDV 216 (406)
T ss_pred HHHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCC----------CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEee
Confidence 6555455566666665442 23589999999999 99999999999988888888899999999999987
Q ss_pred CC--------CceEEEEEEecccccCCCEEEEecCCc----------eeeEEEEEEeeccccceEEccCCeEEEEec---
Q psy3124 256 PG--------RGSVCIGTIKQGTIKRNDEAELLGFNS----------KFTCTISEIQVFQKKVSEARAGDNVGVLLR--- 314 (463)
Q Consensus 256 ~~--------~G~vv~G~v~~G~l~~gd~v~i~~~~~----------~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~--- 314 (463)
++ +|+|++|+|.+|+|++||+|.++|.+. +..++|+||+.++.++++|.|||+|+++|+
T Consensus 217 ~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~ 296 (406)
T TIGR03680 217 NKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDP 296 (406)
T ss_pred cCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCC
Confidence 65 577999999999999999999998642 135799999999999999999999999984
Q ss_pred cccccCcccceEEecCCC-ccccceEEEEEEEeccCCC----CCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCC
Q psy3124 315 NVKLKQIERGMLLAKADT-LQMHNRYEAEIYLLSKAEG----GRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPG 389 (463)
Q Consensus 315 ~~~~~~i~~G~vl~~~~~-~~~~~~f~a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g 389 (463)
+++..++++||+|++++. ++.+.+|+|++.||++..+ ..+++|..||++++|+++.+++|+|...++
T Consensus 297 ~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~-------- 368 (406)
T TIGR03680 297 ALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK-------- 368 (406)
T ss_pred CCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC--------
Confidence 677789999999999975 5577999999999986421 123689999999999999999999987643
Q ss_pred CEEEEEEEeceEEeeccCCeEEE--EeCC--ceEEEEEE
Q psy3124 390 EHGTVTMTLLYKMYLSKGQTFTI--RENN--KLVATGIV 424 (463)
Q Consensus 390 ~~~~v~~~~~~p~~~~~~~rfil--r~~~--~tig~G~V 424 (463)
..++++|.+|+|+++|+||+| |+++ |++|+|.|
T Consensus 369 --~~~~l~l~~p~~~~~g~r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 369 --DEIEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred --cEEEEEECCcEEcCCCCEEEEEEecCCceEEEEEEEe
Confidence 247888999999999999999 5665 79999987
No 27
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.2e-53 Score=450.21 Aligned_cols=336 Identities=30% Similarity=0.451 Sum_probs=293.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++||+|||||||+++|++. .+|..++|+.+|+|++..+..+.+.+..++|+|||||++|.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~-------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI-------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc-------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999864 35778899999999999988888888999999999999999999
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
+.++..+|++++|||+++|.++||.+|+.++..+++|++|||+||||+++++.++.+.+++.++++..++. ..+|++++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~-~~~~ii~v 146 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL-KNAKIFKT 146 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCcEEEE
Confidence 99999999999999999999999999999999999998999999999998877777888888888887653 25899999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHhhhcCCCC-CCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCc
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDALDKHIPNP-VRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNS 284 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p-~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~ 284 (463)
||+++ .|++++.+.|...++.. ....+.||+|+|+++|.++|.|+|++|+|.+|++++||+|.++|.+
T Consensus 147 SA~tG----------~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~- 215 (581)
T TIGR00475 147 SAKTG----------QGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN- 215 (581)
T ss_pred eCCCC----------CCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC-
Confidence 99999 88888887776643321 1125789999999999999999999999999999999999999976
Q ss_pred eeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCccccCCcEEE
Q psy3124 285 KFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQ 364 (463)
Q Consensus 285 ~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~ 364 (463)
..++|++|+.+++++++|.|||+|+++|++++.+++++|++++++.. ++..+.+.+.. ..++..|+.++
T Consensus 216 -~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~--~~~~~~~~~~~--------~~~l~~~~~~~ 284 (581)
T TIGR00475 216 -HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPED--PKLRVVVKFIA--------EVPLLELQPYH 284 (581)
T ss_pred -ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCC--CCceEEEEEEc--------CCccCCCCeEE
Confidence 46899999999999999999999999999999999999988876543 22333333322 24789999999
Q ss_pred EEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeC-CceEEEEEEeee
Q psy3124 365 MFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIREN-NKLVATGIVTKV 427 (463)
Q Consensus 365 ~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~-~~tig~G~V~~~ 427 (463)
+|+|+.++.|++...+.. .+++++.+|+++..|+||++|++ .+|+|+|.|++.
T Consensus 285 ~~~gt~~~~~~i~~l~~~----------~~~l~l~~P~~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 285 IAHGMSVTTGKISLLDKG----------IALLTLDAPLILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred EEEeceEEEEEEEEccCc----------EEEEEECCceecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 999999999999877432 78888999999999999999994 369999999986
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-54 Score=421.59 Aligned_cols=342 Identities=32% Similarity=0.435 Sum_probs=306.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
+.|+.+||+|||||||+.++++. ..|..++|.++|+|+|+.+.++..+++.+.|||+|||++|+++|
T Consensus 1 mii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~m 67 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNL 67 (447)
T ss_pred CeEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHH
Confidence 36899999999999999999876 67999999999999999999999999999999999999999999
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
+.++...|+++||||+++|+++||.||+.++..+|+++.+||+||+|++++.+.++..+++...+. + .+.|++++
T Consensus 68 iag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l--~~~~i~~~ 142 (447)
T COG3276 68 LAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---L--ANAKIFKT 142 (447)
T ss_pred HhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---c--cccccccc
Confidence 999999999999999999999999999999999999999999999999988777666666555544 3 45789999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK 285 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~ 285 (463)
|+.++ .|+++|.+.|.+....+.++.+.||+++||++|.++|.|+||+|++.||++++||++++.|.+
T Consensus 143 s~~~g----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~-- 210 (447)
T COG3276 143 SAKTG----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN-- 210 (447)
T ss_pred ccccC----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCC--
Confidence 99999 999999999998544577888999999999999999999999999999999999999999987
Q ss_pred eeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCccccCCcEEEE
Q psy3124 286 FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQM 365 (463)
Q Consensus 286 ~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~ 365 (463)
.+++|+|||.++.++++|.||++|+++|++++.+++.|||+|+++++.++++.|++.+.|...- .+++..+..+++
T Consensus 211 k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~hi 286 (447)
T COG3276 211 KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPVHI 286 (447)
T ss_pred CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceEEE
Confidence 5589999999999999999999999999999999999999999999889999999999886432 468999999999
Q ss_pred EEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCc--eEEEEEEeeeccCCC
Q psy3124 366 FSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNK--LVATGIVTKVLGNME 432 (463)
Q Consensus 366 ~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~--tig~G~V~~~~~~~~ 432 (463)
|++..+++|++.....+ +++.+.+|+.+-.+++++||++.+ +.++++|+....+.+
T Consensus 287 ~~g~~~~~~~i~~l~~~-----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl~~~~~~~ 344 (447)
T COG3276 287 HVGLRSVTGRIVPLEKN-----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVLSLNLPLR 344 (447)
T ss_pred EEeccccceEeeecccc-----------ceeeeecccccccCceEEEEcccceeeeccceEEecCCCCC
Confidence 99999999999876431 577788898888889999998643 777778887665554
No 29
>KOG1143|consensus
Probab=100.00 E-value=8.4e-52 Score=390.60 Aligned_cols=368 Identities=24% Similarity=0.317 Sum_probs=322.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEE--E------------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE--Y------------------ 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~--~------------------ 103 (463)
-..+++++|..|+|||||++.|+....++|++.++. .+.++++|...|.|..+++-. |
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARl--n~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARL--NIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeee--ehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 457999999999999999999999999999998885 689999999999998765422 1
Q ss_pred -ecCCeeEEEEeCCChhhhHHHHHhhccc--CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHH
Q psy3124 104 -STNTRHYAHTDCPGHADYIKNMISGASQ--MDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIME 180 (463)
Q Consensus 104 -~~~~~~i~liDtPGh~~f~~~~~~~~~~--aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~ 180 (463)
+.+.+-++|||.+||.+|.++++.++.. +|+|+|||+|+.|+...|+|||.++.++++| ++|+++|||+++..-++
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVDRQGLK 322 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeeccccchhHH
Confidence 1235678999999999999999999975 8999999999999999999999999999999 88999999999888888
Q ss_pred HHHHHHHHHHHHcCCC---------------------CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 181 LVELEVRDVLTAYGYD---------------------GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 181 ~i~~~i~~~l~~~g~~---------------------~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
.+.+++..++++.|+. +..+|++.+|+.+| +++.-|..+|. ++++...
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG----------egl~ll~~fLn-~Lsp~~~ 391 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG----------EGLRLLRTFLN-CLSPAGT 391 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc----------cchhHHHHHHh-hcCCcCC
Confidence 8888999998887752 24478888898888 88765555444 3554332
Q ss_pred ------CCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEec--CCceeeEEEEEEeeccccceEEccCCeEEE
Q psy3124 240 ------DITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLG--FNSKFTCTISEIQVFQKKVSEARAGDNVGV 311 (463)
Q Consensus 240 ------~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~--~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l 311 (463)
-...|..|+|+++|++|.+|.|+.|.+.+|.++.|+.+.+.| +|.+.+.+|.+|++.+.++..+.|||.+++
T Consensus 392 ~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAsl 471 (591)
T KOG1143|consen 392 AEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASL 471 (591)
T ss_pred hHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceee
Confidence 235688999999999999999999999999999999999975 567889999999999999999999999999
Q ss_pred EeccccccCcccceEEecCC-CccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCC
Q psy3124 312 LLRNVKLKQIERGMLLAKAD-TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGE 390 (463)
Q Consensus 312 ~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~ 390 (463)
.+...+...+++||||..++ +|+.+..|+|++.+|=|. +.|..|++..+|+|+++++|.|.-+.+. ++|++|+
T Consensus 472 sl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~-d~lrtg~ 545 (591)
T KOG1143|consen 472 SLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDA-DCLRTGK 545 (591)
T ss_pred eccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhh-----HhheecceEEEEEcceeeeeeeeeeccc-ccccCCc
Confidence 99877777899999999886 688899999999999874 6899999999999999999999866554 8999999
Q ss_pred EEEEEEEe-ceEEeeccCCeEEEEeCCceEEEEEEeeeccCCC
Q psy3124 391 HGTVTMTL-LYKMYLSKGQTFTIRENNKLVATGIVTKVLGNME 432 (463)
Q Consensus 391 ~~~v~~~~-~~p~~~~~~~rfilr~~~~tig~G~V~~~~~~~~ 432 (463)
+|.|+|+| ..|+|+++|.+++||++ .|+|+|.|+++.+-.+
T Consensus 546 ~AvV~f~F~~hPEyir~G~~ilfReG-~tKGiG~Vt~Vfp~t~ 587 (591)
T KOG1143|consen 546 WAVVKFCFAYHPEYIREGSPILFREG-KTKGIGEVTKVFPCTQ 587 (591)
T ss_pred eEEEEEEecCCchhccCCCeeeeecc-cccccceEEEEEeccc
Confidence 99999998 57999999999999985 9999999999987554
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-48 Score=360.37 Aligned_cols=349 Identities=32% Similarity=0.450 Sum_probs=297.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-----------------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST----------------- 105 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----------------- 105 (463)
++..||+++||+|||||||+.+|++. ..|++++|.+||+|+.+++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 57899999999999999999999987 679999999999999987643210
Q ss_pred ---------CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 106 ---------NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 106 ---------~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
--+++.|+|+|||+-.+.+|++|++..|+|+|||+|++.. ++||+|||..+.-+|++++||+-||+|+++
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 1367899999999999999999999999999999999875 899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEec
Q psy3124 176 REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV 255 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~ 255 (463)
.++..+-.+++.+|++.- ..++.|++|+||..+ .+++.|+++|..++|.|.++.++|++|+|.++|.+
T Consensus 155 ~E~AlE~y~qIk~FvkGt--~Ae~aPIIPiSA~~~----------~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDV 222 (415)
T COG5257 155 RERALENYEQIKEFVKGT--VAENAPIIPISAQHK----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDV 222 (415)
T ss_pred HHHHHHHHHHHHHHhccc--ccCCCceeeehhhhc----------cCHHHHHHHHHHhCCCCccCCCCCceEEEEeeccc
Confidence 888777778898988743 346799999999999 89999999999999999999999999999999998
Q ss_pred CC--------CceEEEEEEecccccCCCEEEEecC------C----ceeeEEEEEEeeccccceEEccCCeEEEEec---
Q psy3124 256 PG--------RGSVCIGTIKQGTIKRNDEAELLGF------N----SKFTCTISEIQVFQKKVSEARAGDNVGVLLR--- 314 (463)
Q Consensus 256 ~~--------~G~vv~G~v~~G~l~~gd~v~i~~~------~----~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~--- 314 (463)
.. .|-|+.|.+.+|.+++||++.+.|. + .+...+|.||+..+.++++|.||-.+++-.+
T Consensus 223 NkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP 302 (415)
T COG5257 223 NKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDP 302 (415)
T ss_pred CCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCc
Confidence 53 6679999999999999999999763 1 1346789999999999999999999999643
Q ss_pred cccccCcccceEEecCCCc-cccceEEEEEEEeccCCC----CCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCC
Q psy3124 315 NVKLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKAEG----GRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPG 389 (463)
Q Consensus 315 ~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g 389 (463)
.+.+.|--.|.|+..++.+ +...+|+.+..+|+..-| .+-.||+.|..+++.+|+...-..+....++
T Consensus 303 ~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~d------- 375 (415)
T COG5257 303 TLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKKD------- 375 (415)
T ss_pred chhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecCc-------
Confidence 1223566788888888874 667889999999973211 2234899999999999998887777654332
Q ss_pred CEEEEEEEeceEEeeccCCeEEEEe----CCceEEEEEEee
Q psy3124 390 EHGTVTMTLLYKMYLSKGQTFTIRE----NNKLVATGIVTK 426 (463)
Q Consensus 390 ~~~~v~~~~~~p~~~~~~~rfilr~----~~~tig~G~V~~ 426 (463)
.+++.|.+|+|.+.|+|+.+.. .+|.||+|.|.+
T Consensus 376 ---~~ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 376 ---EIEVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred ---eEEEEeccceecCCCCEEEEEeeecceEEEEeEEEEec
Confidence 6788899999999999998843 257999999875
No 31
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.8e-42 Score=364.57 Aligned_cols=279 Identities=30% Similarity=0.408 Sum_probs=237.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.+||+++||+|||||||+++|+.. ..+.+... .+.+|..++|+++|+|+......+.+.+++++|||||||.+|
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~---~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVA---ERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF 77 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccce---eecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH
Confidence 479999999999999999999753 22323222 247999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC--C
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD--N 199 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~--~ 199 (463)
..++.++++.+|+++|||||.+|.+.||++|+..+...++| +|||+||||+.+. .++++.+++.+++..++...+ .
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a-~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPSA-RPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc-CHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999 6799999999753 345566788888877665432 4
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAEL 279 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i 279 (463)
+|++++||+++....+......++..|++.|.+.+|+|..+.++||+++|++++.+++.|++++|||.+|+|++||.|.+
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~ 235 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVAL 235 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEE
Confidence 79999999998543322223358999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCC-ceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCCC
Q psy3124 280 LGFN-SKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 280 ~~~~-~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
.+.+ +....+|++|+.+ +.++++|.|||+|++. + .+++.+||+||+++.
T Consensus 236 ~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--g--l~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 236 MKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--G--LEDINIGETIADPEV 289 (594)
T ss_pred ecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--C--CcccCCCCEEeCCCc
Confidence 8763 3346789999876 5799999999999875 3 468999999998763
No 32
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-40 Score=322.54 Aligned_cols=282 Identities=30% Similarity=0.390 Sum_probs=243.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
++.+||+|+.|+|||||||+..|++.. .+.+....+ +||....|++||+||-.......|++.+++|+|||||.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ER---vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHA 79 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAER---VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHA 79 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhh---hcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcC
Confidence 357899999999999999999997553 223333333 79999999999999988888888999999999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
||-.+..+.++..|+++|+|||.+|.++||+-.+..+.++|+++ |||+||+|+.+.. -+.+.+++.+++..++-+.++
T Consensus 80 DFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~Ar-p~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 80 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKP-IVVINKIDRPDAR-PDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred CccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCc-EEEEeCCCCCCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999999999999999999999999999995 5899999998553 356677888888888765544
Q ss_pred --CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 200 --TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 200 --~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
.|+++.||+.|+...++......+..|++.|..++|.|..+.++||.|.|...-..++.|.+..|||.+|++++|+.|
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V 237 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQV 237 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeE
Confidence 899999999997766665555789999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC-CceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCCCc
Q psy3124 278 ELLGF-NSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333 (463)
Q Consensus 278 ~i~~~-~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 333 (463)
.+... +.....+|..+..+ +.++++|.|||+|+++ |+ .++..|+++|+++.+
T Consensus 238 ~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G~--~~~~igdTi~d~~~~ 294 (603)
T COG1217 238 ALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--GL--EDINIGDTICDPDNP 294 (603)
T ss_pred EEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc--Cc--ccccccccccCCCCc
Confidence 98753 44557889998776 4689999999999885 44 678899999998643
No 33
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=342.88 Aligned_cols=279 Identities=27% Similarity=0.343 Sum_probs=234.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..+||+++||+|||||||+++|+... .+.+.. ..+.+|..+.|+++|+|+......+++.+..++++|||||.+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---QERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---ceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 47899999999999999999997532 111111 125799999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC--C
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG--D 198 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~--~ 198 (463)
|...+..+++.+|++|+|+|+.+|.+.||+.++..+..+++| .+|++||||+... .++.+.+++.+.+..++... .
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a-~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRPGA-RPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCCCC-chhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999999999999999999999999999 5789999999743 34556677777776654432 3
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAE 278 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~ 278 (463)
.+|++++||+++++.........++..|+++|..++|+|..+.++||+++|++++.+++.|++++|||.+|+|++||.|.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~ 238 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVT 238 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEE
Confidence 48999999999954322211124788999999999999988889999999999999999999999999999999999999
Q ss_pred EecC-CceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 279 LLGF-NSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 279 i~~~-~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
+.+. +...+.+|.+|+.. +.++++|.|||++++. ..+++..||+||+++
T Consensus 239 ~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 239 IIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT----GLGELNISDTVCDTQ 292 (607)
T ss_pred EecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE----CccccccCcEEecCC
Confidence 9875 44345789888765 5689999999999875 457889999998765
No 34
>KOG0461|consensus
Probab=100.00 E-value=1.6e-40 Score=311.52 Aligned_cols=363 Identities=28% Similarity=0.467 Sum_probs=281.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec---------CCeeEEEEe
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---------NTRHYAHTD 114 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------~~~~i~liD 114 (463)
..+|++++||+|||||||..+|...... ...|.++..++||+|.|+++..+.. +.-.++++|
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~ST---------aAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGST---------AAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccc---------hhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 3589999999999999999999654211 2568889999999999998766632 335679999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH----HHHHHHHHHHHHH
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE----IMELVELEVRDVL 190 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~----~~~~i~~~i~~~l 190 (463)
+|||...+++.+.|+...|.++||||+..|.+.||.|||.+...+--+ .|||+||+|..+++ .+++....+++-|
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877655 88999999998653 4566667888888
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEeccc
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGT 270 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~ 270 (463)
+..++++ +.|++++||..| .+....+.+|.++|.+.+-.|.|+.++||.|.||+.|.++|.|+|++|+|.+|.
T Consensus 156 e~t~f~g-~~PI~~vsa~~G------~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~ 228 (522)
T KOG0461|consen 156 ESTGFDG-NSPIVEVSAADG------YFKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGV 228 (522)
T ss_pred HhcCcCC-CCceeEEecCCC------ccchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeE
Confidence 8888874 689999999988 334478999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCC
Q psy3124 271 IKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAE 350 (463)
Q Consensus 271 l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 350 (463)
++.|+.+.+...+. .-+|++|++++++|.+|.+||++++.+...+..-+.|| +++.|+.++++...-+++--+.-
T Consensus 229 ~~ln~~iE~PAL~e--~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~vepI~y-- 303 (522)
T KOG0461|consen 229 LRLNTEIEFPALNE--KRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATVEPIQY-- 303 (522)
T ss_pred EecCcEEeecccch--hhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc-ccCCCcccceeeeeeEeecchHH--
Confidence 99999999976553 34799999999999999999999999998888888898 46677777776655444432210
Q ss_pred CCCCccccCCcEEEEEEEEEEeeEEEecCC---------------------CCCccccCCCEEEEEEEeceEEeeccCCe
Q psy3124 351 GGRYKPITSKYIQQMFSRTWNVQVRLDLPG---------------------EDDGMLMPGEHGTVTMTLLYKMYLSKGQT 409 (463)
Q Consensus 351 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~---------------------~~~~~l~~g~~~~v~~~~~~p~~~~~~~r 409 (463)
-.++|......++.++.-.+.+++.+.. ..|..+.+.|..-+-|+|++|+.+-++..
T Consensus 304 --fr~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~ 381 (522)
T KOG0461|consen 304 --FRKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSN 381 (522)
T ss_pred --HhhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCccccc
Confidence 0134544455455444333334333210 11335667788888999999988776533
Q ss_pred EEE--Ee----C-C-ceEEEEEEeeeccC
Q psy3124 410 FTI--RE----N-N-KLVATGIVTKVLGN 430 (463)
Q Consensus 410 fil--r~----~-~-~tig~G~V~~~~~~ 430 (463)
.+. +| + + |..=.|++..+++.
T Consensus 382 ~i~s~ld~d~h~~~CRlAF~Gi~~~~l~~ 410 (522)
T KOG0461|consen 382 PIMSALDEDQHGSGCRLAFSGIFSQILPE 410 (522)
T ss_pred HHHHhhhhhcCCCceEEEeeeehhhhCcc
Confidence 221 11 0 1 34445677666654
No 35
>KOG0462|consensus
Probab=100.00 E-value=6.2e-40 Score=324.43 Aligned_cols=270 Identities=24% Similarity=0.364 Sum_probs=227.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC---eeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT---RHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~liDtPGh~ 119 (463)
...+|++|+.|+|||||||..+|+....-... .......+|....||+||||+......+-+.+ +.+++||||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 45899999999999999999999765331111 11122479999999999999987655554444 889999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
||..+..+.+..+|++||||||++|++.||.-.+.+|...|+. +|.|+||+|+..++. +.++.++.+.+. +. .
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~adp-e~V~~q~~~lF~---~~--~ 209 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSADP-ERVENQLFELFD---IP--P 209 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCCCH-HHHHHHHHHHhc---CC--c
Confidence 9999999999999999999999999999999999999999999 889999999985432 555666666553 32 2
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAEL 279 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i 279 (463)
-+++.+||++| .+++++|+++.+++|+|....++||++.|++++.+.++|.++.++|..|.+++||+|..
T Consensus 210 ~~~i~vSAK~G----------~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~ 279 (650)
T KOG0462|consen 210 AEVIYVSAKTG----------LNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQS 279 (650)
T ss_pred cceEEEEeccC----------ccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEE
Confidence 47899999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeEEEEEEeecc-ccceEEccCCeEEEEecccc-ccCcccceEEecCC
Q psy3124 280 LGFNSKFTCTISEIQVFQ-KKVSEARAGDNVGVLLRNVK-LKQIERGMLLAKAD 331 (463)
Q Consensus 280 ~~~~~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 331 (463)
+.+++...+++.+|...+ .++....||| ||..+.++. .++...||++++..
T Consensus 280 ~~t~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 280 AATGKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred eecCcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecc
Confidence 887776777877776654 5788888887 677666666 67899999998754
No 36
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=4.9e-38 Score=332.16 Aligned_cols=268 Identities=28% Similarity=0.416 Sum_probs=221.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----CeeEEEEeCCC
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-----TRHYAHTDCPG 117 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPG 117 (463)
...+||+++||+|||||||+++|+......... ....+.+|..++|+++|+|+......+.+. +..++||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~-~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSER-EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc-ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 457899999999999999999997532111110 112457899999999999998876665442 57899999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
|.+|...+.++++.+|++|||||+++|+..||.+++..+...++| +++|+||+|+.+.. .+.+.+++.+. +++..
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~-~~~v~~ei~~~---lg~~~ 158 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD-PERVKQEIEDV---IGIDA 158 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc-HHHHHHHHHHH---hCCCc
Confidence 999999999999999999999999999999999999999889999 88999999997432 23334444443 34321
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
.+++++||+++ .|+++|+++|...+|+|..+.++||++.|++++.++++|++++|||.+|+|++||+|
T Consensus 159 --~~vi~iSAktG----------~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i 226 (600)
T PRK05433 159 --SDAVLVSAKTG----------IGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKI 226 (600)
T ss_pred --ceEEEEecCCC----------CCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEE
Confidence 34899999999 999999999999899998888999999999999999999999999999999999999
Q ss_pred EEecCCceeeEEEEEEeec---cccceEEccCCeEEEEecccc-ccCcccceEEecCC
Q psy3124 278 ELLGFNSKFTCTISEIQVF---QKKVSEARAGDNVGVLLRNVK-LKQIERGMLLAKAD 331 (463)
Q Consensus 278 ~i~~~~~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 331 (463)
.+++.+. ..+|.+|..+ ..++++|.||| +++.+.+++ ..++++||+|++.+
T Consensus 227 ~~~~~~~--~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~ 281 (600)
T PRK05433 227 KMMSTGK--EYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAK 281 (600)
T ss_pred EEecCCc--eEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCC
Confidence 9998764 4678888765 46899999999 666666664 47899999998765
No 37
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=6.9e-38 Score=330.71 Aligned_cols=267 Identities=27% Similarity=0.424 Sum_probs=221.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----CeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-----TRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPGh 118 (463)
..+||+++||+|||||||+++|+.......... ...+.+|..++|+++|+|++.....+.+. ...++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 478999999999999999999975421111101 12357899999999999999876665442 367899999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+|...+..+++.+|++|+|+|+++|...||.+++..+...++| +++|+||+|+.+.. .+.+.+++.+. +++.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~-~~~~~~el~~~---lg~~-- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD-PERVKKEIEEV---IGLD-- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC-HHHHHHHHHHH---hCCC--
Confidence 99999999999999999999999999999999999888888998 88999999996432 23333444443 2332
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAE 278 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~ 278 (463)
..+++++||+++ .|+++|+++|.+.+|+|..+.+.||++.|++++.++++|++++|+|.+|+|++||+|.
T Consensus 154 ~~~vi~vSAktG----------~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~ 223 (595)
T TIGR01393 154 ASEAILASAKTG----------IGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIR 223 (595)
T ss_pred cceEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEE
Confidence 135899999999 9999999999999999988889999999999999999999999999999999999999
Q ss_pred EecCCceeeEEEEEEeecc---ccceEEccCCeEEEEecccc-ccCcccceEEecCC
Q psy3124 279 LLGFNSKFTCTISEIQVFQ---KKVSEARAGDNVGVLLRNVK-LKQIERGMLLAKAD 331 (463)
Q Consensus 279 i~~~~~~~~~~V~sI~~~~---~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 331 (463)
+++.+. ..+|.+|..++ .++++|.||| |++.+.+++ ..++++||+|++.+
T Consensus 224 ~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~ 277 (595)
T TIGR01393 224 FMSTGK--EYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVK 277 (595)
T ss_pred EecCCC--eeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCC
Confidence 998764 46788888765 6889999999 777777774 47899999998765
No 38
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-38 Score=306.65 Aligned_cols=271 Identities=27% Similarity=0.385 Sum_probs=226.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-----CCeeEEEEeCC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-----NTRHYAHTDCP 116 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~liDtP 116 (463)
.+..+|++|+.|.|||||||..+|......... .....+.+|....||+||+|+........+ +.+.++|||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~-Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSE-REMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcCh-HHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 456899999999999999999999654221111 112235789999999999999876554432 45788999999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
||.||..+.-+.++.|.+++|||||++|++.||.-...++...++. +|-|+||+|+...+. +.+++++.+.+ |++
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Adp-ervk~eIe~~i---Gid 159 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAADP-ERVKQEIEDII---GID 159 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCCH-HHHHHHHHHHh---CCC
Confidence 9999999999999999999999999999999999999999999998 899999999985433 55666777665 665
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCE
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDE 276 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~ 276 (463)
... .+.+||++| .|++++|++|...+|+|..+.++|++..|++++.++++|.|+..||..|++++||+
T Consensus 160 ~~d--av~~SAKtG----------~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdk 227 (603)
T COG0481 160 ASD--AVLVSAKTG----------IGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDK 227 (603)
T ss_pred cch--heeEecccC----------CCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCE
Confidence 444 688999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceeeEEEEEEeec-cccceEEccCCeEEEEeccccc-cCcccceEEecCC
Q psy3124 277 AELLGFNSKFTCTISEIQVF-QKKVSEARAGDNVGVLLRNVKL-KQIERGMLLAKAD 331 (463)
Q Consensus 277 v~i~~~~~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~~ 331 (463)
+.++.+|+...+.=.++... ..++++..||| ||....+++. .+.+.||+++...
T Consensus 228 i~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 228 IRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLAS 283 (603)
T ss_pred EEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccC
Confidence 99998886654443344333 35788999999 8888777765 6899999998544
No 39
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=2.8e-35 Score=269.98 Aligned_cols=192 Identities=70% Similarity=1.103 Sum_probs=171.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+++||+++||+|||||||+++|+......|+.....++.+|..++|+++|+|++.....|++.++.++|+|||||.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 46899999999999999999999877666665544456799999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
++.+++..+|++++|||+.+|+..|+++|+.++..+++|++|+|+||||+. +++.++.+.+++.+.|+.+++++..+|+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 999999999999999999999999999999999999998888999999997 4556677888999999999998778999
Q ss_pred EEccchhhccCC--CCCCCCccHHHHHHHhhhcCCCC
Q psy3124 203 VFGSALLALQGD--SSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 203 i~~Sa~~~~~~~--~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
+|+||++|.+.. .+||. ++..|+++|++..|.|
T Consensus 161 ipiSa~~g~n~~~~~~w~~--~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVK--KILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCCCcchh--cHhHHHHHHHhCCCCC
Confidence 999999997754 57884 6889999999866554
No 40
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.7e-34 Score=311.03 Aligned_cols=280 Identities=30% Similarity=0.447 Sum_probs=213.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec----CCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST----NTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~liDtPGh 118 (463)
...+||+++||+|||||||+++|+.......+......+.+|..++|++||+|++.+...+.+ .+..++|+|||||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 458899999999999999999996432111000111234699999999999999987655443 4778999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc----------HHHHHHHHHHHHH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD----------REIMELVELEVRD 188 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~----------~~~~~~i~~~i~~ 188 (463)
.+|..++.++++.+|++|+|||+.+|+..||+.++.++...++| .|+++||||+.. ...+..+.+++..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~ 176 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNK 176 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 578999999862 1234444455555
Q ss_pred HHHHcC---------CCCCCCcEEEccchhhccCCCC--------------------------CCCCccHHHHHHHhhhc
Q psy3124 189 VLTAYG---------YDGDNTPFVFGSALLALQGDSS--------------------------ELGEPSIHRLLDALDKH 233 (463)
Q Consensus 189 ~l~~~g---------~~~~~~pvi~~Sa~~~~~~~~~--------------------------~~~~~~i~~Ll~~L~~~ 233 (463)
++..+. +.+.+-.+++.|++.++....+ |. +-+..|+++|..+
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~--Pv~~~Lld~I~~~ 254 (731)
T PRK07560 177 LIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKA--PLHEVVLDMVVKH 254 (731)
T ss_pred HHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhc--cchhHHHHHHHHh
Confidence 555432 1222345777888776221100 00 1123689999999
Q ss_pred CCCCCC-------------------------CCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeE
Q psy3124 234 IPNPVR-------------------------DITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTC 288 (463)
Q Consensus 234 l~~p~~-------------------------~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~ 288 (463)
+|+|.. +.+.|+.+.|++++..++.|.+++|||.+|+|++||.|++.+.+. +.
T Consensus 255 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~--~~ 332 (731)
T PRK07560 255 LPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKK--KN 332 (731)
T ss_pred CCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCC--ce
Confidence 999852 235689999999999999999999999999999999999987653 46
Q ss_pred EEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 289 TISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 289 ~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
+|..|... ..++++|.|||++++. + .+++.+||+|+++.
T Consensus 333 ~v~~i~~~~g~~~~~v~~a~AGdIv~i~--g--l~~~~~GdtL~~~~ 375 (731)
T PRK07560 333 RVQQVGIYMGPEREEVEEIPAGNIAAVT--G--LKDARAGETVVSVE 375 (731)
T ss_pred EeheehhhhcCCCceeeeECCCCEEEEE--c--ccccccCCEEeCCC
Confidence 78888765 4689999999999884 3 35678999998764
No 41
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=9.9e-34 Score=305.98 Aligned_cols=269 Identities=25% Similarity=0.321 Sum_probs=215.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.++||+++||+|+|||||+++|+.. ....|.... ..+.+|+.+.|+++|+|++.....+.+.++.++|+|||||.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~-~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHD-GAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccC-CcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4899999999999999999999643 222222221 235899999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH--------
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA-------- 192 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~-------- 192 (463)
|..++.++++.+|++|+||||.+|+..||++++.++..+++| .|+++||||+.+.+ +..+.+++++.+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC-HHHHHHHHHHHhCCCeeeEEec
Confidence 999999999999999999999999999999999999999999 57999999998433 22222333222211
Q ss_pred --------------------------------------------------------------------------------
Q psy3124 193 -------------------------------------------------------------------------------- 192 (463)
Q Consensus 193 -------------------------------------------------------------------------------- 192 (463)
T Consensus 166 isa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l 245 (693)
T PRK00007 166 IGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAAL 245 (693)
T ss_pred CccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHH
Confidence
Q ss_pred --cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC--------------------CCCCCceeeeE
Q psy3124 193 --YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR--------------------DITSPFILPID 250 (463)
Q Consensus 193 --~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~--------------------~~~~p~~~~I~ 250 (463)
.-.....+|+++.||.++ .|+..||++|..++|+|.. +.+.|+.+.|+
T Consensus 246 ~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf 315 (693)
T PRK00007 246 RKATIANEIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF 315 (693)
T ss_pred HHHHhcCcEEEEEecccccC----------cCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE
Confidence 001112356777777776 7899999999999998852 23568999999
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceE
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGML 326 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 326 (463)
++...+..|.+.++||.+|+|++||.|+....+ ...+|.+|... ..++++|.|||++++. |+ .+++.||+
T Consensus 316 K~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~--~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdt 389 (693)
T PRK00007 316 KIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKG--KKERIGRILQMHANKREEIKEVRAGDIAAAV--GL--KDTTTGDT 389 (693)
T ss_pred EeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCC--ceeEeceeEEeccCCcccccccCCCcEEEEe--CC--ccCCcCCE
Confidence 999999999999999999999999999865433 34577787665 3689999999998874 33 46789999
Q ss_pred EecCC
Q psy3124 327 LAKAD 331 (463)
Q Consensus 327 l~~~~ 331 (463)
|++++
T Consensus 390 L~~~~ 394 (693)
T PRK00007 390 LCDEK 394 (693)
T ss_pred eeCCC
Confidence 98654
No 42
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.7e-33 Score=293.12 Aligned_cols=271 Identities=25% Similarity=0.327 Sum_probs=216.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh---hhHhcCcccc---ccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCC
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITK---VAAKIGKSKF---ITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCP 116 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~---~~~~~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtP 116 (463)
...+||+++||+|||||||+++|+. .....|.... .....+|..+.|+++|+|+......+++.+..++++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3578999999999999999999963 3333333221 112347899999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH----
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA---- 192 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~---- 192 (463)
||.+|...+..+++.+|++|+|||+.+|+..+++..+..+...++| +++++||||+...+. .++.+++++.+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~-~~~l~~i~~~l~~~~~p 165 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP-LELLDEIEEVLGIACAP 165 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccCH-HHHHHHHHHHhCCCCee
Confidence 9999999999999999999999999999999999999999999999 889999999874322 1112222221110
Q ss_pred -------------------------------------------------c---------------------------CCC
Q psy3124 193 -------------------------------------------------Y---------------------------GYD 196 (463)
Q Consensus 193 -------------------------------------------------~---------------------------g~~ 196 (463)
+ -..
T Consensus 166 ~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~ 245 (526)
T PRK00741 166 ITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLA 245 (526)
T ss_pred EEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhc
Confidence 0 001
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC---------CCCCceeeeEEEE---ecCCCceEEEE
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD---------ITSPFILPIDNAI---GVPGRGSVCIG 264 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~---------~~~p~~~~I~~~~---~~~~~G~vv~G 264 (463)
+..+|+++.||.++ .|+..||++|..++|+|... .+.+|...|+++. ..+.+|++.+.
T Consensus 246 ~~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafv 315 (526)
T PRK00741 246 GELTPVFFGSALNN----------FGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFV 315 (526)
T ss_pred CCeEEEEEeecccC----------cCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEE
Confidence 22379999999999 89999999999999988531 2457888999997 45689999999
Q ss_pred EEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 265 TIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 265 ~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
||.||+++.|+.|.....++ +.++..+... ..++++|.|||++++. +..+++.||+|++.+
T Consensus 316 RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 316 RVCSGKFEKGMKVRHVRTGK--DVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred EEeccEECCCCEEEeccCCc--eEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 99999999999998876553 4677776554 4689999999999885 668899999998765
No 43
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-33 Score=298.33 Aligned_cols=271 Identities=29% Similarity=0.402 Sum_probs=217.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPG 117 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG 117 (463)
....+||+++||+|||||||+++|+ +.....|..... ...+|+.+.|++||+|+..+...+.|.+ +.++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g-~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG-AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC-CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence 3458999999999999999999995 333444433221 2379999999999999999999999995 9999999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH-----
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA----- 192 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~----- 192 (463)
|.||..++.++++.+|+|++|+||.+|+++||+..|+++...++| .++++||||+...+.. ...+++.+.|..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~~-~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRLGADFY-LVVEQLKERLGANPVPV 163 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECccccccChh-hhHHHHHHHhCCCceee
Confidence 999999999999999999999999999999999999999999999 5689999999843321 111122111111
Q ss_pred ----------------------------------------------------------------c--C------------
Q psy3124 193 ----------------------------------------------------------------Y--G------------ 194 (463)
Q Consensus 193 ----------------------------------------------------------------~--g------------ 194 (463)
+ |
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 0 0
Q ss_pred ----CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC--------------------CCCCCceeeeE
Q psy3124 195 ----YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR--------------------DITSPFILPID 250 (463)
Q Consensus 195 ----~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~--------------------~~~~p~~~~I~ 250 (463)
.....+|+++.||..+ .+++.||+++..++|.|.. +.+.|+.+.++
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf 313 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF 313 (697)
T ss_pred HHhhhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEE
Confidence 0112456666666666 8899999999999999832 23689999999
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceE
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGML 326 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 326 (463)
++...+..|.+.++||.||+|+.||.++....+ .+.+|..|... ..+++++.||+++++. ..++...|++
T Consensus 314 Ki~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~----Gl~~~~tGdT 387 (697)
T COG0480 314 KIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNEREEVDEVPAGDIVALV----GLKDATTGDT 387 (697)
T ss_pred EeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCceeecccccCccEEEEE----cccccccCCe
Confidence 999999999999999999999999998886544 45788888665 3589999999998874 3456789999
Q ss_pred EecCC
Q psy3124 327 LAKAD 331 (463)
Q Consensus 327 l~~~~ 331 (463)
||+.+
T Consensus 388 l~~~~ 392 (697)
T COG0480 388 LCDEN 392 (697)
T ss_pred eecCC
Confidence 99765
No 44
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-33 Score=303.14 Aligned_cols=269 Identities=25% Similarity=0.325 Sum_probs=216.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..+||+++||+|||||||+++|+... ...|.... ..+.+|+.+.|+++|+|++.....+++.++.++|+|||||.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~-~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD-GAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccC-CccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 48999999999999999999996432 22222211 245899999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH--------
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA-------- 192 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~-------- 192 (463)
|..++..+++.+|++|+||||.+|+..||++++..+...++| +|+++||||+...+ +..+.+++++.+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-FFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeEEec
Confidence 999999999999999999999999999999999999999999 67999999998432 22233333332211
Q ss_pred --------------------------------------------------------------------------------
Q psy3124 193 -------------------------------------------------------------------------------- 192 (463)
Q Consensus 193 -------------------------------------------------------------------------------- 192 (463)
T Consensus 164 is~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l 243 (691)
T PRK12739 164 IGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAI 243 (691)
T ss_pred ccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHH
Confidence
Q ss_pred --cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC-------------------CCCCCceeeeEE
Q psy3124 193 --YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR-------------------DITSPFILPIDN 251 (463)
Q Consensus 193 --~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~-------------------~~~~p~~~~I~~ 251 (463)
.-.....+|++..||.++ .|+..||++|..++|+|.. +.+.|+.+.|++
T Consensus 244 ~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 313 (691)
T PRK12739 244 RKATINMEFFPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFK 313 (691)
T ss_pred HHHHHcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEE
Confidence 001112257777788777 8899999999999998842 346789999999
Q ss_pred EEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEE
Q psy3124 252 AIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 252 ~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
++..++.|.++++||.+|+|++||.|.....+ .+.+|.+|... ..+++++.|||++++. ++ .+++.||+|
T Consensus 314 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl 387 (691)
T PRK12739 314 IMTDPFVGRLTFFRVYSGVLESGSYVLNTTKG--KKERIGRLLQMHANKREEIKEVYAGDIAAAV--GL--KDTTTGDTL 387 (691)
T ss_pred eeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCC--ceEEecceEEEecCCcccccccCCCCEEEEe--CC--CcccCCCEE
Confidence 99999999999999999999999999865444 24567777654 3689999999998875 33 457899999
Q ss_pred ecCC
Q psy3124 328 AKAD 331 (463)
Q Consensus 328 ~~~~ 331 (463)
++..
T Consensus 388 ~~~~ 391 (691)
T PRK12739 388 CDEK 391 (691)
T ss_pred eCCC
Confidence 8654
No 45
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=4.5e-33 Score=289.95 Aligned_cols=271 Identities=23% Similarity=0.295 Sum_probs=216.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccc---cccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCC
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFI---TFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCP 116 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~---~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtP 116 (463)
...+||+++||+|||||||+++|+ +.....|..... ....+|..+.|+++|+|+......+++.+..++|+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 357899999999999999999985 333333332211 12468999999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH----
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA---- 192 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~---- 192 (463)
||.+|...+..++..+|++|+|||+..|+..++..++..+...++| +++++||+|+...+ .+++.+++++.+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~-~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD-PLELLDEVENELKINCAP 166 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC-HHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999999998 88999999986321 11122222222110
Q ss_pred -----------------------------------------------------------------c-----------CCC
Q psy3124 193 -----------------------------------------------------------------Y-----------GYD 196 (463)
Q Consensus 193 -----------------------------------------------------------------~-----------g~~ 196 (463)
+ -..
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 246 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHG 246 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhc
Confidence 0 011
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC---------CCCCceeeeEEEEe--c-CCCceEEEE
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD---------ITSPFILPIDNAIG--V-PGRGSVCIG 264 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~---------~~~p~~~~I~~~~~--~-~~~G~vv~G 264 (463)
+..+|+++.||.++ .|+..||+.+..++|+|... .+.+|...|+++.. + +.+|++.+.
T Consensus 247 ~~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~ 316 (527)
T TIGR00503 247 GEMTPVFFGTALGN----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFM 316 (527)
T ss_pred CCeeEEEEeecccC----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEE
Confidence 23468888899888 89999999999999998532 24678889999976 5 589999999
Q ss_pred EEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 265 TIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 265 ~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
||.||+++.|++|.....+ .+.++..++.. ..++++|.|||++++. +..+++.||+||+.+
T Consensus 317 RV~sG~l~~g~~v~~~~~~--k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 317 RVVSGKYEKGMKLKHVRTG--KDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EEeeeEEcCCCEEEecCCC--CcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 9999999999999887655 34678877654 4689999999999885 667899999998754
No 46
>KOG0466|consensus
Probab=100.00 E-value=4.2e-35 Score=271.03 Aligned_cols=349 Identities=26% Similarity=0.363 Sum_probs=278.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec----------------
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---------------- 105 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------- 105 (463)
.+..+||+.+||+-|||||++.++++. ..-+.+.|-+|.+|+.+++.+...
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv-------------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGV-------------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccc-------------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 456799999999999999999999765 344567788899999886543210
Q ss_pred ---------------------CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCe
Q psy3124 106 ---------------------NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDN 163 (463)
Q Consensus 106 ---------------------~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~ 163 (463)
--+++.|+|+|||.-.+.+|+.|+...|+++|+|.+++.. ++||.|||.....+.+++
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 0256889999999999999999999999999999999874 799999999999999999
Q ss_pred EEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCC
Q psy3124 164 VVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITS 243 (463)
Q Consensus 164 iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~ 243 (463)
++++-||+|+..++...+-.+++..++.... .+..|++|+||... .+++.+.++|...+|.|.++...
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~kFi~~t~--ae~aPiiPisAQlk----------yNId~v~eyivkkIPvPvRdf~s 249 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQKFIQGTV--AEGAPIIPISAQLK----------YNIDVVCEYIVKKIPVPVRDFTS 249 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHHHHHhccc--cCCCceeeehhhhc----------cChHHHHHHHHhcCCCCccccCC
Confidence 9999999999987776666778888876543 35689999999998 89999999999999999999999
Q ss_pred CceeeeEEEEecCC--------CceEEEEEEecccccCCCEEEEecC-------Cc----eeeEEEEEEeeccccceEEc
Q psy3124 244 PFILPIDNAIGVPG--------RGSVCIGTIKQGTIKRNDEAELLGF-------NS----KFTCTISEIQVFQKKVSEAR 304 (463)
Q Consensus 244 p~~~~I~~~~~~~~--------~G~vv~G~v~~G~l~~gd~v~i~~~-------~~----~~~~~V~sI~~~~~~v~~a~ 304 (463)
|+++.|.++|.+.. .|-|..|.+..|.|++||++.+-|. |. ++-.+|.|+...+.+.+.|.
T Consensus 250 ~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~Av 329 (466)
T KOG0466|consen 250 PPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAV 329 (466)
T ss_pred CCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeec
Confidence 99999999999843 5678999999999999999999762 11 11235666666678999999
Q ss_pred cCCeEEEEeccccc----cCcccceEEecCCCc-cccceEEEEEEEeccCCCC---------CCccccCCcEEEEEEEEE
Q psy3124 305 AGDNVGVLLRNVKL----KQIERGMLLAKADTL-QMHNRYEAEIYLLSKAEGG---------RYKPITSKYIQQMFSRTW 370 (463)
Q Consensus 305 aG~~v~l~l~~~~~----~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~---------~~~~i~~g~~~~~~~~~~ 370 (463)
||-.+++-.+ +++ .|--.|.||...+.+ ....+++...++|...-|. +...+.+|..+++.+|+.
T Consensus 330 PGGLIGVGT~-~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~ 408 (466)
T KOG0466|consen 330 PGGLIGVGTK-MDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGST 408 (466)
T ss_pred CCceeeeccc-cCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEeccc
Confidence 9999998643 332 344457777777765 4577788887777432111 123466788888888888
Q ss_pred EeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEE----eCCceEEEEEEee
Q psy3124 371 NVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIR----ENNKLVATGIVTK 426 (463)
Q Consensus 371 ~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr----~~~~tig~G~V~~ 426 (463)
+.-+++.-... ..+++.|..|+|-+.|+++.+. ..+|.||+|.|.+
T Consensus 409 sTG~~v~~vk~----------d~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466|consen 409 STGGRVSAVKA----------DMAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred ccCceEEEEec----------ceeeeEecCchhcccchhhhhhhhhhhheEEecceeEeC
Confidence 77776654322 2678899999999999999884 2478999999875
No 47
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.5e-32 Score=294.88 Aligned_cols=248 Identities=30% Similarity=0.333 Sum_probs=201.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++||+|||||||+++|.+... .....+|+|.+.....+.+.++.++|||||||++|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v----------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV----------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc----------------cccccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 4568999999999999999999964311 111245889888888888888999999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHH---HHHHcCCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD---VLTAYGYDGDN 199 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~---~l~~~g~~~~~ 199 (463)
..+.+++..+|++|||||+++|+++||.+++..+...++| +||++||||+...+ .+.+..++.+ +...++ ..
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g---~~ 426 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWG---GD 426 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC-HHHHHHHHHHhcccHHHhC---CC
Confidence 9999999999999999999999999999999999999999 89999999996432 2233333322 111122 34
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC--CCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI--PNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l--~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
+|++++||+++ .|+++|+++|.... ..+..+.+.|++..|++++.++++|++++++|.+|+|++||.|
T Consensus 427 vp~vpvSAktG----------~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 427 TIFVPVSAKTG----------EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred ceEEEEeCCCC----------CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEE
Confidence 89999999999 89999999886421 1234456789999999999999999999999999999999999
Q ss_pred EEecCCceeeEEEEEEeec-cccceEEccCCeEEEEeccccccCc-ccceEEec
Q psy3124 278 ELLGFNSKFTCTISEIQVF-QKKVSEARAGDNVGVLLRNVKLKQI-ERGMLLAK 329 (463)
Q Consensus 278 ~i~~~~~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~ 329 (463)
++.+ ...+|++|+.. +.++++|.||+.|.+. + ..++ ..||+|+.
T Consensus 497 v~g~----~~gkVr~m~~~~~~~v~~A~pGd~V~I~--g--l~~~p~~Gd~l~~ 542 (787)
T PRK05306 497 VAGT----TYGRVRAMVDDNGKRVKEAGPSTPVEIL--G--LSGVPQAGDEFVV 542 (787)
T ss_pred EECC----cEEEEEEEECCCCCCCCEEcCCCeEEEe--C--CCCCCCCCCEEEE
Confidence 8853 34799999884 6799999999999875 3 3455 79999973
No 48
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-33 Score=269.56 Aligned_cols=272 Identities=26% Similarity=0.378 Sum_probs=218.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccc---cccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFI---TFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~---~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
..+.++|+-|+|||||||.+.|+ +.+...|..+.+ .....|+.+.|++|||++..+...|++.++.++|+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 35789999999999999999985 445555544333 234579999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHH---HHHHHHHH--------
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREI---MELVELEV-------- 186 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~---~~~i~~~i-------- 186 (463)
|+||...+.+-+..+|.|+.||||..|+.+||+..+..|+..++| ++-++||+|+...+. ++++++++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 999999999999999999999999999999999999999999999 999999999984433 33444311
Q ss_pred ---------------------------------------------------------HHHHHHc-----------CCCCC
Q psy3124 187 ---------------------------------------------------------RDVLTAY-----------GYDGD 198 (463)
Q Consensus 187 ---------------------------------------------------------~~~l~~~-----------g~~~~ 198 (463)
++-++-+ -..++
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 0000000 02346
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC---------CCC---CCceeeeEEEEecCCCceEEEEEE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR---------DIT---SPFILPIDNAIGVPGRGSVCIGTI 266 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~---------~~~---~p~~~~I~~~~~~~~~G~vv~G~v 266 (463)
..|+++.||+.+ -|++.+|+.+..+.|+|.. ..+ ..|.|-|+--+..+.+.++.+-||
T Consensus 250 ~TPVFFGSAl~N----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv 319 (528)
T COG4108 250 LTPVFFGSALGN----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRV 319 (528)
T ss_pred ccceEehhhhhc----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEe
Confidence 689999999998 8999999999998888753 112 345666666677788999999999
Q ss_pred ecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCCC
Q psy3124 267 KQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 267 ~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
.||.+..|+++.....|+. +++..-+.+ ++.+++|.|||+||+. +...++.||+++..+.
T Consensus 320 ~SGkferGMkv~h~rtGK~--~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~IGDT~t~Ge~ 383 (528)
T COG4108 320 CSGKFERGMKVTHVRTGKD--VKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGEK 383 (528)
T ss_pred ccccccCCceeeeeecCCc--eEecchHhhhhhhhhhhhhccCCCeEecc----CCCceeecceeecCce
Confidence 9999999999998876643 555555443 5789999999999995 5567999999987653
No 49
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.6e-32 Score=296.95 Aligned_cols=269 Identities=25% Similarity=0.333 Sum_probs=213.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH---hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA---KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.++||+++||+|||||||+++|..... ..|... ...+.+|..+.|+++|+|++.....+++.+..++|+|||||.+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~-~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVH-DGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCcccccccc-CCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 478999999999999999999964322 112111 1236789999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH--------
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA-------- 192 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~-------- 192 (463)
|..++..+++.+|++++|||+.+|...|+.+++..+...++| +++++||||+...+ ++.+.+++++.+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeEEec
Confidence 999999999999999999999999999999999999999999 67899999998432 22222233222211
Q ss_pred ---------------------------------------------------------------c----------------
Q psy3124 193 ---------------------------------------------------------------Y---------------- 193 (463)
Q Consensus 193 ---------------------------------------------------------------~---------------- 193 (463)
+
T Consensus 166 is~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~ 245 (689)
T TIGR00484 166 IGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245 (689)
T ss_pred cccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 0
Q ss_pred --CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC-------------------CCCCCceeeeEEE
Q psy3124 194 --GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR-------------------DITSPFILPIDNA 252 (463)
Q Consensus 194 --g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~-------------------~~~~p~~~~I~~~ 252 (463)
-.....+|++..||.++ .|+..||++|..++|+|.. +.+.|+.+.|+++
T Consensus 246 ~~~~~~~~~PV~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 315 (689)
T TIGR00484 246 KGVLNCEFFPVLCGSAFKN----------KGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKV 315 (689)
T ss_pred HHHhcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEe
Confidence 01112366777777776 7899999999999998852 2356899999999
Q ss_pred EecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 253 IGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 253 ~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
...++.|.+.++||.||+|+.||.|+....+ ...+|..|... ..+++++.|||++++. |+ .+++.||+|+
T Consensus 316 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~--~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl~ 389 (689)
T TIGR00484 316 ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKN--KKERVGRLVKMHANNREEIKEVRAGDICAAI--GL--KDTTTGDTLC 389 (689)
T ss_pred eecCCCCeEEEEEEEEeEEcCCCEEEeCCCC--ceEEecceEEeecCCcccccccCCCCEEEEc--CC--CCCCCCCEEe
Confidence 9999999999999999999999999876433 23467677554 3589999999988873 33 4678999998
Q ss_pred cCC
Q psy3124 329 KAD 331 (463)
Q Consensus 329 ~~~ 331 (463)
+++
T Consensus 390 ~~~ 392 (689)
T TIGR00484 390 DPK 392 (689)
T ss_pred CCC
Confidence 654
No 50
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.6e-32 Score=285.85 Aligned_cols=245 Identities=28% Similarity=0.340 Sum_probs=196.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe-eEEEEeCCChhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR-HYAHTDCPGHADYI 122 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPGh~~f~ 122 (463)
..++|+++||+|||||||+++|.+... ......|+|.+.....+.+.+. .++|+|||||++|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 457899999999999999999965311 1112357888887777777554 89999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC----CC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD----GD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~----~~ 198 (463)
..+.+++..+|+++||+|+++|.++||.+++..+...++| +++++||+|+.+.+ .+.+.+++ ...++. ..
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~-~e~v~~~L----~~~g~~~~~~~~ 223 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN-PDRVKQEL----SEYGLVPEDWGG 223 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC-HHHHHHHH----HHhhhhHHhcCC
Confidence 9999999999999999999999999999999999999999 89999999996422 12222222 222221 12
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc--CCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH--IPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDE 276 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~--l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~ 276 (463)
.+|++++||+++ .|+++|+++|... ++.+..+.+.|++++|.+++.+++.|++++|+|.+|+|++||.
T Consensus 224 ~~~~v~iSAktG----------eGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 224 DTIFVPVSALTG----------DGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred CceEEEEECCCC----------CChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 468999999999 9999999988542 2333445678999999999999999999999999999999999
Q ss_pred EEEecCCceeeEEEEEEee-ccccceEEccCCeEEEEeccccccCc-ccceEEe
Q psy3124 277 AELLGFNSKFTCTISEIQV-FQKKVSEARAGDNVGVLLRNVKLKQI-ERGMLLA 328 (463)
Q Consensus 277 v~i~~~~~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~ 328 (463)
+.+.|. ..+|++|+. ++.++++|.||+.|.+. |++ ++ ..||.+.
T Consensus 294 iv~~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~aGd~~~ 339 (587)
T TIGR00487 294 VVVGAA----YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAAGDEFI 339 (587)
T ss_pred EEECCC----ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCCCCEEE
Confidence 988763 368999998 56799999999988775 443 33 6899886
No 51
>KOG0052|consensus
Probab=100.00 E-value=5.5e-34 Score=275.21 Aligned_cols=344 Identities=28% Similarity=0.421 Sum_probs=275.8
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHH------------hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAIT------------KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~------------~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 107 (463)
.+++.++||+++||+++||||+.+... +.....+++.+.+.|.+|....|+++|++++.....+++..
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 456789999999999999999877422 22345678889999999999999999999999999999999
Q ss_pred eeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCcccH----
Q psy3124 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLVDR---- 176 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~~~~---- 176 (463)
+.++++|.|||.+|.++|+.+.++||.++++|.+..|.+ +||+||..++..+|+.++++.+||||...+
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~ 161 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 161 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccc
Confidence 999999999999999999999999999999999965543 899999999999999999999999998732
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecC
Q psy3124 177 EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVP 256 (463)
Q Consensus 177 ~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~ 256 (463)
.++.++.++.+..++..++ +..+. ..++|...
T Consensus 162 ~r~~ei~k~~~~~~~~~g~--------------------------n~~~~----------------------~~~~~~~~ 193 (391)
T KOG0052|consen 162 ARYEEIKKEVSSYIKKIGY--------------------------NPAAV----------------------LQDVYKIG 193 (391)
T ss_pred cchhhhheeeeeeeecccc--------------------------CChhh----------------------hccceeec
Confidence 2333332222222211111 00000 34455555
Q ss_pred CCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCc--c
Q psy3124 257 GRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL--Q 334 (463)
Q Consensus 257 ~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~--~ 334 (463)
+.| +..|.+++++.+...+... +.++++..+++..-.++.+|++++++..++...++++|+++.++... .
T Consensus 194 g~~------~~t~iie~~~~v~~~~~~~--~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~ 265 (391)
T KOG0052|consen 194 GIG------VETGISEPGMDVTFAPSGV--TTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPV 265 (391)
T ss_pred cee------eeeeeccCccceecccccc--ccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCcc
Confidence 555 8888999999887776553 67899999998888799999999999999999999999999887643 4
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEEEEEeceEE
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTVTMTLLYKM 402 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v~~~~~~p~ 402 (463)
....|.|++.+|.|+ ..|..||.+.+-+|+.++.|++..+ ++.+.++++++.+.+.+.+.+|+
T Consensus 266 ~~~g~t~qviilnhp-----gqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~ 340 (391)
T KOG0052|consen 266 EAAGFTAQVIILNHP-----GQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPL 340 (391)
T ss_pred ccccceeeEEEecCc-----cccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCcc
Confidence 578899999999986 6799999999999999999998832 23467999999999999999999
Q ss_pred eeccC------CeEEEEeCCceEEEEEEeeeccCCCCcccccccchhhh
Q psy3124 403 YLSKG------QTFTIRENNKLVATGIVTKVLGNMEIPQHNLGMIRTKE 445 (463)
Q Consensus 403 ~~~~~------~rfilr~~~~tig~G~V~~~~~~~~~~~~~~~~~~~~~ 445 (463)
|++.. +||.+||...|+|.|.|..+..... ...+.+..+++.
T Consensus 341 ~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~-~~~k~~k~~~~~ 388 (391)
T KOG0052|consen 341 CVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDA-GAGKVTKQAQKG 388 (391)
T ss_pred ccccccccccccchhhhhhhccccccceeeeeeccc-cccccchhhhcc
Confidence 99864 7999999988999999999887665 223443333433
No 52
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=1e-32 Score=252.67 Aligned_cols=182 Identities=40% Similarity=0.630 Sum_probs=155.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcccc--ccccccCCChhhhhcCceEEeeEEEEe--cCCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKF--ITFDQIDRAPEEKARGITINIAHVEYS--TNTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~--~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPGh 118 (463)
|+.+||+++||+|||||||+++|+........... .....++..++|+++++|++.....+. ..++.++|+|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 46899999999999999999999866433222110 112247899999999999999999998 89999999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHH-HHHHHcCCCC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVR-DVLTAYGYDG 197 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~-~~l~~~g~~~ 197 (463)
.+|.+++.+++..+|++|+||||.+|...|+.+|+..+..+++| +|||+||||+. ...++++.+++. .+++..++.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTT
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch-hhhHHHHHHHHHHHhccccccCc
Confidence 99999999999999999999999999999999999999999999 89999999999 455667777777 6668887775
Q ss_pred -CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 198 -DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 198 -~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
..+|++++||+++ .|+++|+++|.+++|+
T Consensus 159 ~~~~~vi~~Sa~~g----------~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 159 EEIVPVIPISALTG----------DGIDELLEALVELLPS 188 (188)
T ss_dssp TSTEEEEEEBTTTT----------BTHHHHHHHHHHHS--
T ss_pred cccceEEEEecCCC----------CCHHHHHHHHHHhCcC
Confidence 4699999999999 9999999999998874
No 53
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2e-31 Score=289.11 Aligned_cols=269 Identities=29% Similarity=0.412 Sum_probs=215.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..+||+++||+|+|||||+++|+... ...|.... ..+.+|..+.|+++|+|+......+.+.+..++++|||||.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~-~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVED-GTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccC-CcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 47999999999999999999997432 12221111 124689999999999999999899999999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH--------
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA-------- 192 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~-------- 192 (463)
|...+..+++.+|++++|+|+.++...++.+++..+...++| +++++||+|+...+ +....+++++.+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGAD-LFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC-HHHHHHHHHHHHCCCeEEEEec
Confidence 999999999999999999999999999999999999999999 77899999988432 22222233222111
Q ss_pred ----------------------------------------------------------------c--C------------
Q psy3124 193 ----------------------------------------------------------------Y--G------------ 194 (463)
Q Consensus 193 ----------------------------------------------------------------~--g------------ 194 (463)
+ +
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 0 0
Q ss_pred ----CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC------------------CCCCCceeeeEEE
Q psy3124 195 ----YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR------------------DITSPFILPIDNA 252 (463)
Q Consensus 195 ----~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~------------------~~~~p~~~~I~~~ 252 (463)
.....+|+++.||+++ .|++.|+++|..++|+|.. +.+.|+.+.|+++
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKN----------IGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred HHHHHhCCEEEEEecccCcC----------ccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 0112478999999998 9999999999999999852 3467899999999
Q ss_pred EecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 253 IGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 253 ~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
+..++.|.++++||.+|+|++||.|++.+.+. ..+|..|... ..++++|.|||++++. + .+++..|++|+
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~--~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~gdtl~ 387 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGK--REKVGRLFRLQGNKREEVDRAKAGDIVAVA--G--LKELETGDTLH 387 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCCC--ceEeeeEEEEccCCeeECCccCCCCEEEEE--C--cccCccCCEEe
Confidence 99999999999999999999999999986553 3567677554 4689999999998763 3 35677899998
Q ss_pred cCC
Q psy3124 329 KAD 331 (463)
Q Consensus 329 ~~~ 331 (463)
+..
T Consensus 388 ~~~ 390 (687)
T PRK13351 388 DSA 390 (687)
T ss_pred CCC
Confidence 654
No 54
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.98 E-value=3.1e-31 Score=287.41 Aligned_cols=280 Identities=30% Similarity=0.423 Sum_probs=206.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEE----EecCCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE----YSTNTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~----~~~~~~~i~liDtPGh 118 (463)
...+||+++||+|||||||+++|+.......+........+|..++|+++|+|++..... +++.+..++|+|||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 357999999999999999999996431111000111123589999999999999876543 6778889999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH----------HHHHHHHHHHHH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR----------EIMELVELEVRD 188 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~----------~~~~~i~~~i~~ 188 (463)
.+|...+..++..+|++|+|+|+.+|+..+|.+++..+...++| .++++||||+... +.+..+..++..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRLINELKLTPQELQERFIKIITEVNK 175 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHh
Confidence 99999999999999999999999999999999999999899999 5699999998631 222333333444
Q ss_pred HHHHcC---------CCCCCCcEEEccchhhccCC---------------------C-----CCCCCccHHHHHHHhhhc
Q psy3124 189 VLTAYG---------YDGDNTPFVFGSALLALQGD---------------------S-----SELGEPSIHRLLDALDKH 233 (463)
Q Consensus 189 ~l~~~g---------~~~~~~pvi~~Sa~~~~~~~---------------------~-----~~~~~~~i~~Ll~~L~~~ 233 (463)
.+.... +.....++.+.|++.++... . .|. +-+..|+++|..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--Pv~~~Lld~i~~~ 253 (720)
T TIGR00490 176 LIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKS--PLHQVVLDMVIRH 253 (720)
T ss_pred hhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhh--hHHHHHHHHHHHh
Confidence 443210 11111223334444331000 0 011 1256789999999
Q ss_pred CCCCCC-------------------------CCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeE
Q psy3124 234 IPNPVR-------------------------DITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTC 288 (463)
Q Consensus 234 l~~p~~-------------------------~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~ 288 (463)
+|+|.. +.+.|+.+.|+++...++.|++++|||.+|+|++||.|++.+.+ ...
T Consensus 254 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~--~~~ 331 (720)
T TIGR00490 254 LPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK--AKA 331 (720)
T ss_pred CCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC--Cee
Confidence 998842 22568999999999999999999999999999999999998765 347
Q ss_pred EEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 289 TISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 289 ~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
+|..|+.. ..++++|.|||++++. + .+++.+||+|++++
T Consensus 332 kv~~l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~~~ 374 (720)
T TIGR00490 332 RIQQVGVYMGPERVEVDEIPAGNIVAVI--G--LKDAVAGETICTTV 374 (720)
T ss_pred EeeEEEEeccCCccCccEECCCCEEEEE--C--ccccccCceeecCC
Confidence 88898765 4589999999999884 3 35678999998764
No 55
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=1.6e-30 Score=276.74 Aligned_cols=248 Identities=25% Similarity=0.279 Sum_probs=194.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec----CCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST----NTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~liDtPGh 118 (463)
...++|+++||+|||||||+++|..... .....+|+|.+.....+.+ .+..++|+|||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~----------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI----------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC----------------ccccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 3568999999999999999999965311 1122357777665444433 3588999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHH---HHHcCC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDV---LTAYGY 195 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~---l~~~g~ 195 (463)
+.|...+.+++..+|++||||||.+|..+||.+++..+...++| +|||+||||+.+.+ .+.+.+++... ...++
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g- 382 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN-TERIKQQLAKYNLIPEKWG- 382 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC-HHHHHHHHHHhccchHhhC-
Confidence 99999999999999999999999999999999999999999999 88999999997532 23333333221 11122
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC--CCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP--NPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKR 273 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~--~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~ 273 (463)
..+|++++||+++ .|+++|+++|..... ....+.+.|+...|.++..+++.|++++|+|.+|+|++
T Consensus 383 --~~vpvv~VSAktG----------~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~ 450 (742)
T CHL00189 383 --GDTPMIPISASQG----------TNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHI 450 (742)
T ss_pred --CCceEEEEECCCC----------CCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEec
Confidence 2479999999999 999999999876432 22334567888999999999999999999999999999
Q ss_pred CCEEEEecCCceeeEEEEEEee-ccccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 274 NDEAELLGFNSKFTCTISEIQV-FQKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 274 gd~v~i~~~~~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
||.|.+.+ ...+|++|.. .+.++++|.||+.|.+. +++ .....||.|.
T Consensus 451 GD~vv~g~----~~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~~Gd~l~ 499 (742)
T CHL00189 451 GDIIVIGT----SYAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPATGEHFQ 499 (742)
T ss_pred CCEEEECC----cceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCCCCCEEE
Confidence 99998875 2378999975 46799999999998773 332 4566799775
No 56
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=2.6e-30 Score=279.98 Aligned_cols=262 Identities=30% Similarity=0.429 Sum_probs=208.9
Q ss_pred EcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHh
Q psy3124 51 IGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMIS 127 (463)
Q Consensus 51 ~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~ 127 (463)
+||+|||||||+++|... ....|+... ..+.+|..+.|+++|+|+......+.+.+..+++||||||.+|...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~-~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVED-GTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccC-CcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 699999999999999543 222222111 1257899999999999999999999999999999999999999999999
Q ss_pred hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH---------------
Q psy3124 128 GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA--------------- 192 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~--------------- 192 (463)
++..+|++++|+|+..+...++..++..+...++| +++|+||+|+...+ +..+.+++++.+..
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD-FFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-HHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 99999999999999999999999999999999999 77899999987322 12222222222110
Q ss_pred ------------------------------------------------------------------------cCCCCCCC
Q psy3124 193 ------------------------------------------------------------------------YGYDGDNT 200 (463)
Q Consensus 193 ------------------------------------------------------------------------~g~~~~~~ 200 (463)
.-.....+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 00111247
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC-----------------CCCCCceeeeEEEEecCCCceEEE
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR-----------------DITSPFILPIDNAIGVPGRGSVCI 263 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~-----------------~~~~p~~~~I~~~~~~~~~G~vv~ 263 (463)
|++.+||+++ .|++.|+++|..++|+|.. +.+.|+.+.|++++..++.|.+++
T Consensus 238 Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~ 307 (668)
T PRK12740 238 PVFCGSALKN----------KGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSL 307 (668)
T ss_pred EEEeccccCC----------ccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEE
Confidence 8999999999 9999999999999999852 346789999999999999999999
Q ss_pred EEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 264 GTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 264 G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
+||.+|+|++||.|++.+.++ +.+|..|... ..++++|.|||++++. ++ +.+++||+|++..
T Consensus 308 ~RV~sG~L~~g~~v~~~~~~~--~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 308 VRVYSGTLKKGDTLYNSGTGK--KERVGRLYRMHGKQREEVDEAVAGDIVAVA--KL--KDAATGDTLCDKG 373 (668)
T ss_pred EEEeeeEEcCCCEEEeCCCCC--cEEecceeeecCCCccccCccCCCCEEEEe--cc--CccCCCCEEeCCC
Confidence 999999999999999987543 2455555432 4789999999999885 44 4689999998654
No 57
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=5.8e-30 Score=269.82 Aligned_cols=255 Identities=26% Similarity=0.280 Sum_probs=188.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec------------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST------------------ 105 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~------------------ 105 (463)
+...|+++||+|||||||+++|++.....+ ...++|...+...+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~----------------~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~ 68 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAK----------------EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKL 68 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccC----------------CCCceEEeeceeeccccccccccceecccccccc
Confidence 456799999999999999999975421111 1112332222111110
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc----------
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD---------- 175 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~---------- 175 (463)
.-..++|+|||||++|...+.++++.+|++++|+|+++|..+||.+++.++...++| +++++||+|+.+
T Consensus 69 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 69 KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchH
Confidence 111379999999999999999999999999999999999999999999999999999 889999999862
Q ss_pred -----------HHHHHHHHHHHHHHHHHcCCCC----------CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh--
Q psy3124 176 -----------REIMELVELEVRDVLTAYGYDG----------DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK-- 232 (463)
Q Consensus 176 -----------~~~~~~i~~~i~~~l~~~g~~~----------~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~-- 232 (463)
...+++...++...|...|+.. ..+|++++||+++ .|+++|++.+..
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG----------eGi~dLl~~i~~~~ 217 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG----------EGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC----------CChHHHHHHHHHHH
Confidence 1122333344555666666543 3589999999999 999998887753
Q ss_pred --cCCCC-CCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeecc------------
Q psy3124 233 --HIPNP-VRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ------------ 297 (463)
Q Consensus 233 --~l~~p-~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~------------ 297 (463)
.++.+ ..+.+.|++++|.+++.++|.|++++|+|.+|+|++||.|.+.|.+....++|++|..++
T Consensus 218 ~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~ 297 (586)
T PRK04004 218 QRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKF 297 (586)
T ss_pred HHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhcccccccc
Confidence 23222 345678999999999999999999999999999999999999887655567999998762
Q ss_pred ccceEEccCCeEEEEeccccccCcccceEE
Q psy3124 298 KKVSEARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 298 ~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
..+++|.|..-|-+...|+ +++..|+-+
T Consensus 298 ~~~~~~~~~~~v~i~~~gl--~~~~~g~~~ 325 (586)
T PRK04004 298 KPVDEVVAAAGVKISAPDL--EDALAGSPL 325 (586)
T ss_pred ccccccCCCCceEEEeCCc--cccCCCCeE
Confidence 4667777766555543333 334566644
No 58
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=1.1e-29 Score=266.48 Aligned_cols=254 Identities=26% Similarity=0.303 Sum_probs=185.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec------------------C
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST------------------N 106 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~------------------~ 106 (463)
...|+++||+|||||||+++|++..... +...|+|.++....+.+ .
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~----------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK----------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc----------------ccCCceecccCeeEeeeccccccccccccccccccc
Confidence 4579999999999999999997642110 11123444332222211 1
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH-------HH
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE-------IM 179 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~-------~~ 179 (463)
...+.|+|||||++|...+..+++.+|++++|+|+++|..+|+.+++..+...++| +++++||+|+.+.. .+
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHH
Confidence 12488999999999999999999999999999999999999999999999999998 88999999997310 00
Q ss_pred H-------HHH-------HHHHHHHHHcCCCC----------CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc--
Q psy3124 180 E-------LVE-------LEVRDVLTAYGYDG----------DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH-- 233 (463)
Q Consensus 180 ~-------~i~-------~~i~~~l~~~g~~~----------~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~-- 233 (463)
+ .+. ..+...|.+.|+.. ..+|++|+||++| .|+++|+++|...
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG----------eGideLl~~l~~l~~ 216 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG----------EGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC----------CChhHHHHHHHHHHH
Confidence 0 111 11122344455432 2589999999999 9999999988642
Q ss_pred --CC-CCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeecc------------c
Q psy3124 234 --IP-NPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ------------K 298 (463)
Q Consensus 234 --l~-~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~------------~ 298 (463)
++ ....+.+.|++++|.+++.++|.|++++|.|.+|+|++||.+.++|.+..+.++|++|...+ .
T Consensus 217 ~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~ 296 (590)
T TIGR00491 217 QYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQ 296 (590)
T ss_pred HHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccC
Confidence 22 12235678999999999999999999999999999999999999987666678999998764 3
Q ss_pred cceEEccCCeEEEEeccccccCcccceEE
Q psy3124 299 KVSEARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 299 ~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
.+.++.|..-+-+...+++ ....|+.+
T Consensus 297 ~~~~~~~~~~~~v~~~~l~--~~~aG~~~ 323 (590)
T TIGR00491 297 KVDEVVAAAGVKIAAPGLD--DVMAGSPI 323 (590)
T ss_pred CcceecCCCceeEEecCCC--CCCCCCEE
Confidence 5666666654555444443 34566654
No 59
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=8e-30 Score=280.22 Aligned_cols=283 Identities=25% Similarity=0.387 Sum_probs=201.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC---------------
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--------------- 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--------------- 106 (463)
...++||+++||+|||||||+++|+....-..+......+.+|..++|+++|+|++.+...+.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34589999999999999999999974421111111112346899999999999999866555552
Q ss_pred -CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-------cH--
Q psy3124 107 -TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-------DR-- 176 (463)
Q Consensus 107 -~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-------~~-- 176 (463)
++.++|+|||||.+|..++.++++.+|++|+||||.+|+..||+.+++++...++| +|+++||||+. +.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~ 174 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEA 174 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHH
Confidence 67889999999999999999999999999999999999999999999999999999 67999999998 32
Q ss_pred -HHHHHHHHHHHHHHHHcC--------CCCCCCcEEEccchhh-------------------------------------
Q psy3124 177 -EIMELVELEVRDVLTAYG--------YDGDNTPFVFGSALLA------------------------------------- 210 (463)
Q Consensus 177 -~~~~~i~~~i~~~l~~~g--------~~~~~~pvi~~Sa~~~------------------------------------- 210 (463)
..++.+.++++..+..++ +.+..-.+++.|+..+
T Consensus 175 ~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~ 254 (843)
T PLN00116 175 YQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
T ss_pred HHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCC
Confidence 345666667764433332 0011111222222111
Q ss_pred -------------------------------------------ccC---C------------------CCCCCCccHHHH
Q psy3124 211 -------------------------------------------LQG---D------------------SSELGEPSIHRL 226 (463)
Q Consensus 211 -------------------------------------------~~~---~------------------~~~~~~~~i~~L 226 (463)
++. . .+|+ .+...|
T Consensus 255 ~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~--~~s~~L 332 (843)
T PLN00116 255 KKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWL--PASDAL 332 (843)
T ss_pred ceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhc--CChHHH
Confidence 000 0 0233 233678
Q ss_pred HHHhhhcCCCCCC-------------------------CCCCCceeeeEEEEecCCCce-EEEEEEecccccCCCEEEEe
Q psy3124 227 LDALDKHIPNPVR-------------------------DITSPFILPIDNAIGVPGRGS-VCIGTIKQGTIKRNDEAELL 280 (463)
Q Consensus 227 l~~L~~~l~~p~~-------------------------~~~~p~~~~I~~~~~~~~~G~-vv~G~v~~G~l~~gd~v~i~ 280 (463)
++.+..++|+|.. +.+.|+...|++++..+..|. ++++||.||+|+.||.|+++
T Consensus 333 ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~ 412 (843)
T PLN00116 333 LEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIM 412 (843)
T ss_pred HHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEe
Confidence 8888888888841 124588999999988887787 89999999999999999875
Q ss_pred cCCce-------eeEEEEEEeec----cccceEEccCCeEEEEeccccccC-cccceEEecCC
Q psy3124 281 GFNSK-------FTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQ-IERGMLLAKAD 331 (463)
Q Consensus 281 ~~~~~-------~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~~~~ 331 (463)
+.+.. ...+|..|... ..++++|.||+++++. | ..+ +..|++|++..
T Consensus 413 ~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--g--l~~~~~~gdTL~~~~ 471 (843)
T PLN00116 413 GPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--G--LDQFITKNATLTNEK 471 (843)
T ss_pred CCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--e--ecccccCCceecCCc
Confidence 43211 11356566544 2689999999988875 2 233 45599997654
No 60
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.97 E-value=1.2e-29 Score=237.83 Aligned_cols=184 Identities=36% Similarity=0.532 Sum_probs=156.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh---Hh------------cCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEE
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA---AK------------IGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYA 111 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~---~~------------~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~ 111 (463)
||+++||+|||||||+++|.... .+ .|...+++.+.+|..+.|+++|+|++.....+++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999995321 11 2344444556899999999999999999999999999999
Q ss_pred EEeCCChhhhHHHHHhhcccCCEEEEEEeCCC-------CCcHHHHHHHHHHHHcCCCeEEEEEeccCccc----HHHHH
Q psy3124 112 HTDCPGHADYIKNMISGASQMDGAIVVVAASE-------GQMPQTREHLLLSKQIGIDNVVVYVNKADLVD----REIME 180 (463)
Q Consensus 112 liDtPGh~~f~~~~~~~~~~aD~ailVVda~~-------g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~----~~~~~ 180 (463)
++|||||.+|..+++.++..+|++|+|||+.+ +...|+.+++..+..+++++++||+||||+.. +..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 45679999999998899888999999999972 45678
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhc
Q psy3124 181 LVELEVRDVLTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 181 ~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+.+++...++.+++....+|++++||++|.+. ..+||.+ ..|+++|...
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g---~~l~~~l~~~ 215 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKG---PTLLEALDSL 215 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccC---CcHHHHHhCC
Confidence 888899888998888766799999999999653 3479966 5688888773
No 61
>KOG1145|consensus
Probab=99.97 E-value=2.2e-29 Score=249.54 Aligned_cols=247 Identities=29% Similarity=0.312 Sum_probs=194.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHADYI 122 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~f~ 122 (463)
+.+.|.++||+|||||||+.+|.+..... -..-|+|..++.+.... ++++++|+|||||.-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA----------------~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA----------------GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh----------------hhcCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 56789999999999999999996542111 11238898887665443 67899999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHH---HHHHcCCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD---VLTAYGYDGDN 199 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~---~l~~~g~~~~~ 199 (463)
.+..+|+..+|.++|||.|.+|+++||.|.+..++..++| +||++||||....+. +.+++++.. .++.+| .+
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~G---Gd 290 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGANP-EKVKRELLSQGIVVEDLG---GD 290 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcC---Cc
Confidence 9999999999999999999999999999999999999999 999999999984432 233333322 233444 35
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC--CCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI--PNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l--~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
++++|+||++| .+++.|.+++.-.. -.-..++..|+.-.|-+...++++|.+.+.-|..|+|+.|+.+
T Consensus 291 VQvipiSAl~g----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vl 360 (683)
T KOG1145|consen 291 VQVIPISALTG----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVL 360 (683)
T ss_pred eeEEEeecccC----------CChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEE
Confidence 89999999999 89999888875421 1223456889999999999999999999999999999999988
Q ss_pred EEecCCceeeEEEEEEeec-cccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 278 ELLGFNSKFTCTISEIQVF-QKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 278 ~i~~~~~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
...- .+ ++|+++..+ ++++++|.|++-|.+. |.+ +--..||.+.
T Consensus 361 V~G~--~w--~KVr~l~D~nGk~i~~A~Ps~pv~V~--Gwk-dlP~aGD~vl 405 (683)
T KOG1145|consen 361 VAGK--SW--CKVRALFDHNGKPIDEATPSQPVEVL--GWK-DLPIAGDEVL 405 (683)
T ss_pred EEec--hh--hhhhhhhhcCCCCccccCCCCceEee--ccc-CCCCCCceEE
Confidence 6642 33 789999876 4799999999988875 322 2234666443
No 62
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.3e-29 Score=249.65 Aligned_cols=232 Identities=31% Similarity=0.324 Sum_probs=183.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC---CeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN---TRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDtPGh~~ 120 (463)
..+-|+++||+|||||||+..+-+.....| -.-|+|..++.+.+..+ ...++|+|||||+-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~----------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA 67 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA 67 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc----------------cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH
Confidence 356789999999999999999965422221 12389999988888774 47899999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC---
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG--- 197 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~--- 197 (463)
|.....+|...+|.++||||+++|+++||.|.+..+++.++| +||++||||+.+.+.. .+..+ |.+.|+.+
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np~-~v~~e----l~~~gl~~E~~ 141 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEANPD-KVKQE----LQEYGLVPEEW 141 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCCHH-HHHHH----HHHcCCCHhhc
Confidence 999999999999999999999999999999999999999999 9999999999855432 22333 33335432
Q ss_pred -CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC--CCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCC
Q psy3124 198 -DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI--PNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274 (463)
Q Consensus 198 -~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l--~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~g 274 (463)
..+.++|+||++| .|+++||+.|.-.. ..-..+.+.+.+-.|.++...+|.|.+++--|..|+|++|
T Consensus 142 gg~v~~VpvSA~tg----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~G 211 (509)
T COG0532 142 GGDVIFVPVSAKTG----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKG 211 (509)
T ss_pred CCceEEEEeeccCC----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecC
Confidence 2388999999999 99999999886421 1223356788999999999999999999999999999999
Q ss_pred CEEEEecCCceeeEEEEEEeec-cccceEEccCCeEEE
Q psy3124 275 DEAELLGFNSKFTCTISEIQVF-QKKVSEARAGDNVGV 311 (463)
Q Consensus 275 d~v~i~~~~~~~~~~V~sI~~~-~~~v~~a~aG~~v~l 311 (463)
|.+.+.... .+|+.+... ..+++.+.++..+.+
T Consensus 212 D~iv~g~~~----g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 212 DIIVAGGEY----GRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred CEEEEccCC----CceEEeehhcCCCccccCCCCCeEE
Confidence 999886532 456666543 456777666644443
No 63
>PTZ00416 elongation factor 2; Provisional
Probab=99.97 E-value=1.2e-28 Score=270.47 Aligned_cols=285 Identities=25% Similarity=0.365 Sum_probs=201.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC----------CeeEEE
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN----------TRHYAH 112 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------~~~i~l 112 (463)
...+||+++||+|||||||+++|+....-..+......+.+|..++|+++|+|++.+...+.+. ++.++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4578999999999999999999975321110111112235899999999999999876555554 677999
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc----c------HHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV----D------REIMELV 182 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~----~------~~~~~~i 182 (463)
+|||||.+|..++..+++.+|++|+||||.+|+..||+.++..+...++| +|+++||||+. . ...++.+
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~i 175 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVKT 175 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 77999999997 2 1346667
Q ss_pred HHHHHHHHHHcC--------CCCCCCcEEEccchhh---------------------------c-----c--CC------
Q psy3124 183 ELEVRDVLTAYG--------YDGDNTPFVFGSALLA---------------------------L-----Q--GD------ 214 (463)
Q Consensus 183 ~~~i~~~l~~~g--------~~~~~~pvi~~Sa~~~---------------------------~-----~--~~------ 214 (463)
.++++..+..++ +.+....+.+.|+..+ + + +.
T Consensus 176 i~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~ 255 (836)
T PTZ00416 176 IENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDE 255 (836)
T ss_pred HHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEecc
Confidence 777777665321 1111111222222200 0 0 00
Q ss_pred ------------------------------C---------CC--------CCC--------------ccHHHHHHHhhhc
Q psy3124 215 ------------------------------S---------SE--------LGE--------------PSIHRLLDALDKH 233 (463)
Q Consensus 215 ------------------------------~---------~~--------~~~--------------~~i~~Ll~~L~~~ 233 (463)
+ .+ +.. +-++.|++++..+
T Consensus 256 ~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~ 335 (836)
T PTZ00416 256 TNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDH 335 (836)
T ss_pred CCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 0 00 000 0125678888888
Q ss_pred CCCCCC-------------------------CCCCCceeeeEEEEecCCCce-EEEEEEecccccCCCEEEEecCCce--
Q psy3124 234 IPNPVR-------------------------DITSPFILPIDNAIGVPGRGS-VCIGTIKQGTIKRNDEAELLGFNSK-- 285 (463)
Q Consensus 234 l~~p~~-------------------------~~~~p~~~~I~~~~~~~~~G~-vv~G~v~~G~l~~gd~v~i~~~~~~-- 285 (463)
+|+|.. +.+.|+...|+++...+..|. +.++||.||+|+.||.|++.+.+..
T Consensus 336 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~ 415 (836)
T PTZ00416 336 LPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPG 415 (836)
T ss_pred CCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCC
Confidence 998841 124588899999998888898 7999999999999999987543211
Q ss_pred ee-----EEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 286 FT-----CTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 286 ~~-----~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
.+ .+|..|... ..++++|.||+++++. |++..-.+.| +|++..
T Consensus 416 ~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 416 KKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred CcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 11 136666554 3689999999998884 3332226788 887654
No 64
>KOG0465|consensus
Probab=99.97 E-value=4.5e-30 Score=257.07 Aligned_cols=268 Identities=23% Similarity=0.305 Sum_probs=213.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
+..+||++.-|.||||||+.++++ +.....+....+ ...+|..+.|+++|+|+..+...+.|.+.++++||||||.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 468999999999999999999984 222222222222 3478999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHH---HHH------------
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMEL---VEL------------ 184 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~---i~~------------ 184 (463)
||..+..++++..|+|++|+|+..|++.||.-.+++++..++| .|.++||||+...+.+.. +..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP-RICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 9999999999999999999999999999999999999999999 568999999973322111 111
Q ss_pred -----------------------------------------------HH--------------------------HHHHH
Q psy3124 185 -----------------------------------------------EV--------------------------RDVLT 191 (463)
Q Consensus 185 -----------------------------------------------~i--------------------------~~~l~ 191 (463)
++ ...++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 11 11111
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC--------------------CCC-CCceeeeE
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR--------------------DIT-SPFILPID 250 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~--------------------~~~-~p~~~~I~ 250 (463)
..-+...-+||+..||+.. .|++.||+++.+++|+|.. ..+ .||....+
T Consensus 275 r~Ti~r~fvPVl~GSAlKN----------kGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAF 344 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKN----------KGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAF 344 (721)
T ss_pred HHHhhcceeeEEechhhcc----------cCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEE
Confidence 1112334589999999998 9999999999999999853 112 28888888
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeecc----ccceEEccCCeEEEEeccccccCcccceE
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ----KKVSEARAGDNVGVLLRNVKLKQIERGML 326 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 326 (463)
+....+. |..-+-||.+|+|+.||.++....+ .+++|..+.+.| ++|+++.|||++++. |+ +...||+
T Consensus 345 Kle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg--KKvrv~RL~rmHa~~medV~~v~AG~I~alf--Gi---dcasGDT 416 (721)
T KOG0465|consen 345 KLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG--KKVRVGRLVRMHANDMEDVNEVLAGDICALF--GI---DCASGDT 416 (721)
T ss_pred EeeecCc-cceEEEEEeeeeecCCcEEEecCCC--ceeEhHHHhHhcccccchhhhhhccceeeee--cc---ccccCce
Confidence 8887777 9999999999999999999987665 456777775543 689999999988874 44 7889999
Q ss_pred EecC
Q psy3124 327 LAKA 330 (463)
Q Consensus 327 l~~~ 330 (463)
+.+.
T Consensus 417 ftd~ 420 (721)
T KOG0465|consen 417 FTDK 420 (721)
T ss_pred eccC
Confidence 9876
No 65
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.96 E-value=1.5e-28 Score=228.56 Aligned_cols=185 Identities=34% Similarity=0.464 Sum_probs=153.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh---H------------hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEE
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA---A------------KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYA 111 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~---~------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~ 111 (463)
||+++||+|||||||+++|+... . ..++......+.+|..+.|+++|+|++.....+++.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999996432 1 11233334456899999999999999999999999999999
Q ss_pred EEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc--HHHHHHHHHHHHHH
Q psy3124 112 HTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEVRDV 189 (463)
Q Consensus 112 liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~~~~~~i~~~i~~~ 189 (463)
|+|||||++|...+..++..+|++|+|+|+.++...++.+++.++...++|++|+|+||+|+.+ .+.++.+..+++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999899887888999999973 45566777888888
Q ss_pred HHHcCCCCCCCcEEEccchhhccC-----CCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQG-----DSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~-----~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
++.+++. ..|++++||+++.+. ..+||.++ .|+++|+. +++|
T Consensus 161 ~~~~~~~--~~~ii~iSA~~g~ni~~~~~~~~w~~g~---~~~~~~~~-~~~~ 207 (208)
T cd04166 161 AAKLGIE--DITFIPISALDGDNVVSRSENMPWYSGP---TLLEHLET-VPIA 207 (208)
T ss_pred HHHcCCC--CceEEEEeCCCCCCCccCCCCCCCCCCC---cHHHHHhc-CCCC
Confidence 8888763 367999999998543 34799765 56777776 5544
No 66
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.95 E-value=1.1e-27 Score=224.33 Aligned_cols=177 Identities=27% Similarity=0.369 Sum_probs=149.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE--E----------------------E
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH--V----------------------E 102 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~----------------------~ 102 (463)
+|+++|+.++|||||+++|+....+.|++..+. .++++++|.++|+|+.+.. . .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARL--NLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEe--ehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 489999999999999999997766666665543 5889999999999986543 1 1
Q ss_pred EecCCeeEEEEeCCChhhhHHHHHhhcc--cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHH
Q psy3124 103 YSTNTRHYAHTDCPGHADYIKNMISGAS--QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIME 180 (463)
Q Consensus 103 ~~~~~~~i~liDtPGh~~f~~~~~~~~~--~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~ 180 (463)
++..++.++|+|||||++|.+++..++. .+|++++|||+.+|...++++|+..+..+++| +++|+||+|+.+++.++
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAPANILQ 157 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccCHHHHH
Confidence 2334678999999999999999999986 79999999999999999999999999999999 88999999999887888
Q ss_pred HHHHHHHHHHHHcCCC---------------------CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 181 LVELEVRDVLTAYGYD---------------------GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 181 ~i~~~i~~~l~~~g~~---------------------~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
...+++.+.|+..|+. ...+|++++||.++ .|+++|+++|.. +|++
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg----------~Gi~~L~~~L~~-lp~~ 224 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG----------EGLDLLHAFLNL-LPLR 224 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc----------cCHHHHHHHHHh-cCCC
Confidence 8888888888754432 12469999999999 999999999887 7653
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.95 E-value=2.7e-27 Score=219.36 Aligned_cols=169 Identities=38% Similarity=0.555 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-------------------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN------------------- 106 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~------------------- 106 (463)
+||+++||+|||||||+++|++. ..|..++|.++|+|+..+...+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999653 3678889999999998876655442
Q ss_pred --------C------eeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCCeEEEEEecc
Q psy3124 107 --------T------RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-QMPQTREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 107 --------~------~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-~~~qt~e~l~~~~~l~ip~iivvvNKi 171 (463)
+ +.++|+|||||++|..++..++..+|++++|+|+.++ ...++.+++..+...+++++++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 7899999999999999999999999999999999984 678899999988888887799999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 172 DLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 172 D~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
|+.++..+....+++++.++.+.. ..+|++++||+++ .|+++|+++|...+|.|.+
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g----------~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIA--ENAPIIPISAQLK----------YNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCC----------CCHHHHHHHHHHhCCCCCC
Confidence 998765555556677777665422 3478999999999 9999999999998887754
No 68
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=6.5e-27 Score=218.24 Aligned_cols=186 Identities=29% Similarity=0.408 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecC----------CeeEEE
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN----------TRHYAH 112 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------~~~i~l 112 (463)
+||+++||+|||||||+++|+... .....+. .+.+|..+.|++||+|++.+...+.+. +..++|
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~i 77 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGK---ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINL 77 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCc---eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEE
Confidence 589999999999999999996542 2222122 346899999999999999875544433 678999
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc------c----HHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV------D----REIMELV 182 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~------~----~~~~~~i 182 (463)
+|||||.+|..++..+++.+|++++|||+.+|...||++++..+...++| +|+|+||||+. + ...+.++
T Consensus 78 iDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~i 156 (222)
T cd01885 78 IDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARI 156 (222)
T ss_pred ECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 88999999985 2 2345666
Q ss_pred HHHHHHHHHHcCCC------CCC---Cc----EEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 183 ELEVRDVLTAYGYD------GDN---TP----FVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 183 ~~~i~~~l~~~g~~------~~~---~p----vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
.+++..+++.+.-+ .++ .| |++.|++.++.-... ....+..+++.+..++|+|
T Consensus 157 i~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~--~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 157 IEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTII--KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccc--cccchHHHHHHHHhhCCCC
Confidence 77777777766311 011 25 888999998543221 2246678999999989876
No 69
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.94 E-value=2.2e-25 Score=244.24 Aligned_cols=253 Identities=24% Similarity=0.243 Sum_probs=191.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-----------------
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT----------------- 107 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~----------------- 107 (463)
..|+..-|-..| ||||+.+|.+... .++...|+|++++...+..+.
T Consensus 462 ~~~~~~~~~~~~-KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~ 524 (1049)
T PRK14845 462 THNFIANGILVH-NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIK 524 (1049)
T ss_pred cCcceeeeeecc-cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCC
Confidence 355555554444 9999999976522 233456999998776665431
Q ss_pred -eeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH-H------H-
Q psy3124 108 -RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR-E------I- 178 (463)
Q Consensus 108 -~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~-~------~- 178 (463)
..++|+|||||++|...+..++..+|++++|+|+++|+.+||.+++..+...++| +++|+||+|+.+. . .
T Consensus 525 ~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~ 603 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFL 603 (1049)
T ss_pred cCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhh
Confidence 1389999999999998888889999999999999999999999999999999998 8899999999631 1 0
Q ss_pred ------HHHHHHHH-------HHHHHHcCCCC----------CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 179 ------MELVELEV-------RDVLTAYGYDG----------DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 179 ------~~~i~~~i-------~~~l~~~g~~~----------~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+...+++ ...|...|+.. ..+|++|+||++| .|+++|+++|....+
T Consensus 604 ~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG----------eGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 604 LNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG----------EGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC----------CCHHHHHHHHHHhhH
Confidence 11122222 22245556542 3589999999999 999999998865222
Q ss_pred -----CCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec------------cc
Q psy3124 236 -----NPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF------------QK 298 (463)
Q Consensus 236 -----~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~------------~~ 298 (463)
....+.+.|++++|++++.++|.|++++|.|.+|+|++||.|.++|.+..+.++|++|... ..
T Consensus 674 ~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~ 753 (1049)
T PRK14845 674 KYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFD 753 (1049)
T ss_pred HhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCccccccccccccccc
Confidence 1233467899999999999999999999999999999999999998766667899999742 23
Q ss_pred cceEEccCCeEEEEeccccccCcccceEE
Q psy3124 299 KVSEARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 299 ~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
++++|.|+.-|-+...|. +.+..|+-+
T Consensus 754 ~~~~~~~a~~vki~a~gl--~~~~aG~~~ 780 (1049)
T PRK14845 754 PVDEVTAAAGVKIAAPGL--EEVLAGSPI 780 (1049)
T ss_pred ccccccCCCceEEecCCc--cccCCCCeE
Confidence 677888877666654443 344677754
No 70
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=5.5e-26 Score=218.58 Aligned_cols=127 Identities=31% Similarity=0.414 Sum_probs=112.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
||+++||+|||||||+++|+.. ....|.... ..+.+|..++|+++|+|++.....+++.+.+++|+|||||.+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~-~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHG-GGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccC-CccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence 6999999999999999999642 222332221 245789999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
++..+++.+|++++|||+..|+..+|.+++..+...++| +++++||+|+.+
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~ 130 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 999999999999999999999999999999999999999 678999999973
No 71
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=3.8e-25 Score=203.22 Aligned_cols=171 Identities=32% Similarity=0.513 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--------------CeeEE
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--------------TRHYA 111 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--------------~~~i~ 111 (463)
+||+++||+|+|||||+++|+... + .+.+|...+|+++|+|++.....+.+. +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~---~------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIA---S------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhcc---c------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 489999999999999999997631 0 125688889999999999876666554 67899
Q ss_pred EEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHH---
Q psy3124 112 HTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD--- 188 (463)
Q Consensus 112 liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~--- 188 (463)
++|||||.+|...+..++..+|++++|+|+.++...++.+++..+...+.| +++++||+|+...+..+...+++.+
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988998888888888887 8899999999854443333344443
Q ss_pred -HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC
Q psy3124 189 -VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV 238 (463)
Q Consensus 189 -~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~ 238 (463)
.+...++ ..+|++++||+++ .|+++|+++|...+++|.
T Consensus 151 ~~~~~~~~--~~~~vi~iSa~~g----------~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 151 KTLEKTRF--KNSPIIPVSAKPG----------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHhcCc--CCCCEEEEeccCC----------CCHHHHHHHHHhcccccc
Confidence 3433333 3589999999999 999999999999888774
No 72
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.93 E-value=2.7e-25 Score=210.12 Aligned_cols=178 Identities=34% Similarity=0.487 Sum_probs=144.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
||+++||+|+|||||+++|+.. ....|+... ..+.+|..++|+++|+|+......+++.+.+++++|||||.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~-~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDK-GTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccC-CcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 6899999999999999999754 233343322 235689999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH------------
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLT------------ 191 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~------------ 191 (463)
.+..+++.+|++++|+|+.+|...++.+++..+...++| +++++||+|+...+ ++.+.+++++.+.
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~~~~~~p~~~ 157 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGAD-LEKVYQEIKEKLSSDIVPMQKVGLA 157 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCC-HHHHHHHHHHHHCCCeEEEECCcEe
Confidence 999999999999999999999999999999999999999 67899999997422 1222222222211
Q ss_pred --------------------------Hc------------------CCCCCCCcEEEccchhhccCCCCCCCCccHHHHH
Q psy3124 192 --------------------------AY------------------GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLL 227 (463)
Q Consensus 192 --------------------------~~------------------g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll 227 (463)
.+ -..+.-+|+++.||.++ .|+..||
T Consensus 158 ~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~----------~Gv~~ll 227 (237)
T cd04168 158 PNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG----------IGIEELL 227 (237)
T ss_pred eeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCC----------cCHHHHH
Confidence 10 01224589999999999 9999999
Q ss_pred HHhhhcCCCC
Q psy3124 228 DALDKHIPNP 237 (463)
Q Consensus 228 ~~L~~~l~~p 237 (463)
+.|..++|+|
T Consensus 228 ~~~~~~~p~~ 237 (237)
T cd04168 228 EGITKLFPTS 237 (237)
T ss_pred HHHHHhcCCC
Confidence 9999999876
No 73
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=9e-25 Score=201.09 Aligned_cols=191 Identities=32% Similarity=0.429 Sum_probs=149.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.++|+++|++++|||||+++|+..............+.++..+.|..+|+|.......+.+.+..+.++|||||++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 57999999999999999999975311100000011245788888999999999888888888999999999999999999
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC--CCcE
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD--NTPF 202 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~--~~pv 202 (463)
+..+++.+|++++|+|+.++...++.+++..+...++| +++|+||+|+.+.. .+...+++.+.+..++.... .+|+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999999998888888888888888999 78899999997432 34455667777666554322 4789
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
+++||++|.+........+++.+|++.|..++|.|
T Consensus 160 v~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 160 LYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 99999998665433223478999999999988876
No 74
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.93 E-value=8e-25 Score=210.36 Aligned_cols=130 Identities=28% Similarity=0.419 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh---hHhcCcccc---ccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKF---ITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
.+||+++||+|+|||||+++|+.. ....|.... .....+|..++|+++|+|+......+++.+.+++++|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 589999999999999999999643 334443221 23346899999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+|...+..+++.+|++|+|+|+..++..++..++..+...++| +++++||||+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999999999999999889999 789999999863
No 75
>KOG0464|consensus
Probab=99.92 E-value=2.8e-26 Score=220.22 Aligned_cols=270 Identities=23% Similarity=0.313 Sum_probs=202.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..+||+++.|+|+||||..++|. +.....|... ...++.|....|++||+|+..+...|+|.++++++||||||.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vd-dgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVD-DGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccC-CCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 36899999999999999999984 2222222211 1124678889999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH---HHHHHHHHH-----------
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE---IMELVELEV----------- 186 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~---~~~~i~~~i----------- 186 (463)
|.-++.+.++..|+++.|+|++.|+.+||...|+++..+++| -++++||||....+ ..+.+.+.+
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk~~ip-~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi 193 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP-AHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPI 193 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc-hhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecc
Confidence 999999999999999999999999999999999999999999 56899999987432 222222200
Q ss_pred --------------------------------------------------------------------------------
Q psy3124 187 -------------------------------------------------------------------------------- 186 (463)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (463)
T Consensus 194 ~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~ 273 (753)
T KOG0464|consen 194 GEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDK 273 (753)
T ss_pred cccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccc
Confidence
Q ss_pred ------HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC-------CCCCceeeeEEEE
Q psy3124 187 ------RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD-------ITSPFILPIDNAI 253 (463)
Q Consensus 187 ------~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~-------~~~p~~~~I~~~~ 253 (463)
+..+..+-+....+|+...||.+. .|++.|+++...++|+|... ....++..-+++.
T Consensus 274 i~a~elksai~~lt~aq~a~~i~cgsaikn----------kgiqplldavtmylpspeernyeflqwykddlcalafkvl 343 (753)
T KOG0464|consen 274 IDAEELKSAIHELTCAQKAAPILCGSAIKN----------KGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVL 343 (753)
T ss_pred cCHHHHHHHHHHHhhhhhhcceehhhhhcc----------cCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhh
Confidence 000111111113467888888887 89999999999999998652 2445555667777
Q ss_pred ecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEec
Q psy3124 254 GVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAK 329 (463)
Q Consensus 254 ~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 329 (463)
.++.+|..++.|+.+|+|+++-.+.... +..+..+..+... +..++++.||. +++. .| ......||+++.
T Consensus 344 hdkqrg~l~fmriysgsi~~~~ai~nin--~~~se~~~kl~~pfade~~~i~qlsagn-ialt-~g--lk~tatgdtiva 417 (753)
T KOG0464|consen 344 HDKQRGPLSFMRIYSGSIHNNLAIFNIN--GMCSEGILKLFLPFADEHREIEQLSAGN-IALT-AG--LKHTATGDTIVA 417 (753)
T ss_pred cccccCceeEEEEecccccCceeeeecc--cccccchHhhhccchhhhhhhhhccccc-EEEE-ec--ceeeccCCeEEe
Confidence 8899999999999999999988876642 2233344444332 45789999997 4443 23 355678998865
Q ss_pred CC
Q psy3124 330 AD 331 (463)
Q Consensus 330 ~~ 331 (463)
..
T Consensus 418 sk 419 (753)
T KOG0464|consen 418 SK 419 (753)
T ss_pred cc
Confidence 43
No 76
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=1.4e-23 Score=186.93 Aligned_cols=162 Identities=44% Similarity=0.676 Sum_probs=131.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhhhHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~f~~~ 124 (463)
++|+++|++++|||||+++|++. ..+..+.+..+++|++..+..+... +..+.++||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 47999999999999999999753 1233455666788888877666665 778999999999999998
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEE
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVF 204 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~ 204 (463)
+..++..+|++++|+|++++...++.+++..+...+.+++++++||+|+.++...+...+++.+.++..+. ...|+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 145 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFL--ADAPIFP 145 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCc--CCCcEEE
Confidence 88889999999999999998888999988888777875599999999998665445555667777665432 2478999
Q ss_pred ccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 205 GSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 205 ~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+||+++ .+++++++.|..
T Consensus 146 ~Sa~~~----------~~v~~l~~~l~~ 163 (164)
T cd04171 146 VSAVTG----------EGIEELKEYLDE 163 (164)
T ss_pred EeCCCC----------cCHHHHHHHHhh
Confidence 999999 999999988754
No 77
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=1.8e-23 Score=190.59 Aligned_cols=180 Identities=41% Similarity=0.626 Sum_probs=150.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|.+|+|||||+++|++.....+.........++....+..+++|++.....++..+..+.|+||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999998765444433333334567778889999999988888888888999999999999999999
Q ss_pred hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC---------CC
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY---------DG 197 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~---------~~ 197 (463)
..+..+|++++|+|+.++...+..+++..+...+.| +++++||+|+..+..+....+++++.++..+. ..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 999999999999999999888888888888887888 89999999998755566666777777776553 23
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
...|++++||+.+ .|++++++.|...+|+|
T Consensus 160 ~~~~v~~~Sa~~g----------~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 160 LLVPIVPGSALTG----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CcceEEEEecccC----------cCHHHHHHHHHhhCCCC
Confidence 4689999999999 89999999999988754
No 78
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=2.1e-23 Score=194.80 Aligned_cols=189 Identities=23% Similarity=0.385 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhc---CccccccccccCCChhhhhcCceEEeeEEEEec-----CCeeEEEEeCCC
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKI---GKSKFITFDQIDRAPEEKARGITINIAHVEYST-----NTRHYAHTDCPG 117 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~---g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~liDtPG 117 (463)
+||+++||+|+|||||+++|+...... |.......+.+|..+.|+++|+|+......+.+ ....++++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 579999999999999999997653322 222333345689999999999999876666543 247789999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-------cH---HHHHHHHHHHH
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-------DR---EIMELVELEVR 187 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-------~~---~~~~~i~~~i~ 187 (463)
|.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++|+||+|++ +. ..++++.+++.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888888888887 88999999985 22 35566777888
Q ss_pred HHHHHcCCCCC--CCc----EEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 188 DVLTAYGYDGD--NTP----FVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 188 ~~l~~~g~~~~--~~p----vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
..++.+++++. -+| +++.|++.++.-+.. ....+.+|++.|..++|.|
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE--SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCCeEEecH--HHHhhhhHHHHHHhhCCCC
Confidence 88888776431 133 666777766221111 1134558888888887765
No 79
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=5.7e-23 Score=186.15 Aligned_cols=174 Identities=28% Similarity=0.448 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEE-----ecCCeeEEEEeCCChhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY-----STNTRHYAHTDCPGHAD 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-----~~~~~~i~liDtPGh~~ 120 (463)
+||+++|++++|||||+++|++.....-.. ....+..+....|+.+|+|........ ...+..++|+|||||++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 589999999999999999997642110000 011246788889999999988655444 33566788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
|...+..++..+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+.. .....+++.+ .+++. ..
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~-~~~~~~~~~~---~~~~~--~~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD-PERVKQQIED---VLGLD--PS 152 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-HHHHHHHHHH---HhCCC--cc
Confidence 999999999999999999999998888888888877778888 88999999986422 2222333333 23432 23
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
+++++||+++ .++++|++.|...+|.|
T Consensus 153 ~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTG----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCC----------CCHHHHHHHHHhhCCCC
Confidence 5899999999 99999999999887765
No 80
>KOG0469|consensus
Probab=99.90 E-value=2.4e-23 Score=204.16 Aligned_cols=283 Identities=27% Similarity=0.384 Sum_probs=193.8
Q ss_pred ccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe------------
Q psy3124 37 ASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS------------ 104 (463)
Q Consensus 37 ~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~------------ 104 (463)
+.+...+..+|+.++.|+|||||||..+|.....-.....+.....+|..+.|.+||+|+....+.+-
T Consensus 11 ~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k 90 (842)
T KOG0469|consen 11 ELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIK 90 (842)
T ss_pred HHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhc
Confidence 34556677899999999999999999999533211111111112258999999999999987655431
Q ss_pred ----cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc------
Q psy3124 105 ----TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV------ 174 (463)
Q Consensus 105 ----~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~------ 174 (463)
.++.-+++||.|||.||..+.-.+++..|+|++|||+-+|+..||+..|+++....|+++ +++||||++
T Consensus 91 ~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPv-lv~NK~DRAlLELq~ 169 (842)
T KOG0469|consen 91 QEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LVMNKMDRALLELQL 169 (842)
T ss_pred CCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccce-EEeehhhHHHHhhcC
Confidence 235678999999999999999999999999999999999999999999999999999865 789999986
Q ss_pred cHHHHHHHHHHHHHHHHHc-------CC--------CCCCCcEEEccchhhcc---------------------------
Q psy3124 175 DREIMELVELEVRDVLTAY-------GY--------DGDNTPFVFGSALLALQ--------------------------- 212 (463)
Q Consensus 175 ~~~~~~~i~~~i~~~l~~~-------g~--------~~~~~pvi~~Sa~~~~~--------------------------- 212 (463)
+++ ++.+.++...+.. +. .++.-.+-+.|.+.|+.
T Consensus 170 ~~E---eLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg 246 (842)
T KOG0469|consen 170 SQE---ELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWG 246 (842)
T ss_pred CHH---HHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhc
Confidence 222 1122222222111 10 00111112233332200
Q ss_pred -------------------C-------------------------------------------CC--------------C
Q psy3124 213 -------------------G-------------------------------------------DS--------------S 216 (463)
Q Consensus 213 -------------------~-------------------------------------------~~--------------~ 216 (463)
+ +. .
T Consensus 247 ~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~ 326 (842)
T KOG0469|consen 247 DNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRK 326 (842)
T ss_pred ccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHH
Confidence 0 00 1
Q ss_pred CCCCccHHHHHHHhhhcCCCCCC-------------------------CCCCCceeeeEEEEecCCCceE-EEEEEeccc
Q psy3124 217 ELGEPSIHRLLDALDKHIPNPVR-------------------------DITSPFILPIDNAIGVPGRGSV-CIGTIKQGT 270 (463)
Q Consensus 217 ~~~~~~i~~Ll~~L~~~l~~p~~-------------------------~~~~p~~~~I~~~~~~~~~G~v-v~G~v~~G~ 270 (463)
|. +..+.||+.|.-++|+|.. +.++|+.|+|.+...-+..|+. .+|||++|+
T Consensus 327 wL--PAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~ 404 (842)
T KOG0469|consen 327 WL--PAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGK 404 (842)
T ss_pred hc--chHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecce
Confidence 32 3346788888888888742 6788999999998877777765 589999999
Q ss_pred ccCCCEEEEecCCc----eeeEEEEEEee-------ccccceEEccCCeEEEEeccccccCcccceEE
Q psy3124 271 IKRNDEAELLGFNS----KFTCTISEIQV-------FQKKVSEARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 271 l~~gd~v~i~~~~~----~~~~~V~sI~~-------~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
+..|+++++.+.+. ....-+++|++ .-++++...+|.++|+. |++.--++.|.+-
T Consensus 405 v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtGTiT 470 (842)
T KOG0469|consen 405 VFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTGTIT 470 (842)
T ss_pred eccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccCcee
Confidence 99999999975431 11111333332 24789999999999985 5655556666543
No 81
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.89 E-value=2.9e-22 Score=193.76 Aligned_cols=127 Identities=27% Similarity=0.391 Sum_probs=110.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
||+++||+|+|||||+++|.... ...|... ...+.+|..++|+.+++|+......+++.+..++++|||||.+|..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH
Confidence 68999999999999999996432 2222221 1235688999999999999988888999999999999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+..++..+|++++|+|+..+...++..++..+...++| +++++||+|+..
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 999999999999999999999999999999999999999 668999999873
No 82
>KOG1144|consensus
Probab=99.88 E-value=2e-22 Score=205.32 Aligned_cols=217 Identities=25% Similarity=0.297 Sum_probs=163.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec----------------
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---------------- 105 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------- 105 (463)
+...+.++|+||+|.|||-|+..|.+...+.|.. .|+|..++..+|..
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegea----------------ggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEA----------------GGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccc----------------cceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 3456778999999999999999997654443332 25565554443322
Q ss_pred --CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-c------H
Q psy3124 106 --NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-D------R 176 (463)
Q Consensus 106 --~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~------~ 176 (463)
.--.+.+||||||+.|.....+|.+.||.||||||..+|+.+||.|.+.+++..+.| |||++||+|+. . .
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCc
Confidence 123578999999999999999999999999999999999999999999999999999 99999999986 1 1
Q ss_pred HHHHH-------HHHHH-------HHHHHHcCCC----------CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 177 EIMEL-------VELEV-------RDVLTAYGYD----------GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 177 ~~~~~-------i~~~i-------~~~l~~~g~~----------~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...+. +.+++ ..-+...|++ +.-+.++|+||.+| +|+.+|+-+|.+
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG----------eGipdLl~llv~ 684 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG----------EGIPDLLLLLVQ 684 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC----------CCcHHHHHHHHH
Confidence 11111 11122 2222233321 12367899999999 999999999887
Q ss_pred cCCCCC---CCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce
Q psy3124 233 HIPNPV---RDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK 285 (463)
Q Consensus 233 ~l~~p~---~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~ 285 (463)
+..... -..-..+.+.|..+-.++|.|+.+-..+..|.|+.||.+.+++.+.+
T Consensus 685 ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 685 LTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGP 740 (1064)
T ss_pred HHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCc
Confidence 432111 02345678899999999999999999999999999999999876544
No 83
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=6.7e-21 Score=166.67 Aligned_cols=148 Identities=27% Similarity=0.325 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY---- 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f---- 121 (463)
++|+++|.+++|||||+|+|++.....|. -.|.|++.....+...+..+.|+|+||..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n----------------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN----------------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE----------------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC----------------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 47999999999999999999987433332 2388999888888888999999999995332
Q ss_pred HHH--HHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKN--MISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~--~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+ ....+ ..+|++++|+||++ ..+....+.++..+|+| +++|+||+|++....+..-.+.+.+.| |
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g~~id~~~Ls~~L---g--- 135 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKGIEIDAEKLSERL---G--- 135 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTTEEE-HHHHHHHH---T---
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcCCEECHHHHHHHh---C---
Confidence 111 12222 57999999999986 45556666778889999 889999999985433222223343333 3
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHh
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDAL 230 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L 230 (463)
+|++++||+++ .|+++|+++|
T Consensus 136 --~pvi~~sa~~~----------~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTG----------EGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTT----------BTHHHHHHHH
T ss_pred --CCEEEEEeCCC----------cCHHHHHhhC
Confidence 79999999999 9999999875
No 84
>KOG0467|consensus
Probab=99.84 E-value=1.9e-19 Score=185.01 Aligned_cols=164 Identities=27% Similarity=0.363 Sum_probs=129.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
...+||+++.|+|||||||..+|... +...-.++.| .+|..++|..||+|+..+.+.+...++.+++||+|||.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkir---fld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIR---FLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhcccee---eccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34799999999999999999999543 1221112222 68999999999999999888887789999999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-------cHHHHHHHH---HHHHHH
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-------DREIMELVE---LEVRDV 189 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-------~~~~~~~i~---~~i~~~ 189 (463)
||..+.-++.+.+|+++++||+.+|+..||...++++-..+++ .++|+||||+. +.+.+..+. +++...
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~ 162 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGV 162 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999998 67999999943 444444332 333333
Q ss_pred HH-------------------HcCCCCCCCcEEEccchhh
Q psy3124 190 LT-------------------AYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 190 l~-------------------~~g~~~~~~pvi~~Sa~~~ 210 (463)
+. ..-|++.+-.+++.||..+
T Consensus 163 i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~ 202 (887)
T KOG0467|consen 163 IGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDG 202 (887)
T ss_pred HHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccc
Confidence 32 1124555566888888876
No 85
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=7.2e-20 Score=163.74 Aligned_cols=159 Identities=35% Similarity=0.402 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC---CeeEEEEeCCChhhhHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN---TRHYAHTDCPGHADYIK 123 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDtPGh~~f~~ 123 (463)
.|+++|++++|||||+++|++.... .....+.|.+.....+... +..+.++||||+..|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 5899999999999999999753111 1122356666554555543 67899999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc-CCCCCCCcE
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY-GYDGDNTPF 202 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~-g~~~~~~pv 202 (463)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+.. .+.+..++....... ......+|+
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQI 143 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcE
Confidence 888888999999999999998888999999888889998 88999999997432 122222332221110 001234789
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+++||+++ .++.+|+++|..+
T Consensus 144 ~~~Sa~~~----------~gi~~l~~~l~~~ 164 (168)
T cd01887 144 VPTSAKTG----------EGIDDLLEAILLL 164 (168)
T ss_pred EEeecccC----------CCHHHHHHHHHHh
Confidence 99999999 9999999998763
No 86
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=7.4e-20 Score=188.94 Aligned_cols=161 Identities=28% Similarity=0.326 Sum_probs=125.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|++++|||||+++|++.. ........|.|.+.....+...+..+.++||||+.++.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEE---------------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCC---------------eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccc
Confidence 346899999999999999999997641 11112234777777667777788899999999975432
Q ss_pred -----------HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHH
Q psy3124 123 -----------KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVL 190 (463)
Q Consensus 123 -----------~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l 190 (463)
..+..++..+|++++|+|+.++...++.+.+..+...+.| +++|+||+|+. +.+.++.+.+++...+
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKL 313 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhc
Confidence 2235577889999999999999999999999888888988 88999999998 5556666666666655
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
...+ .+|++++||+++ .++.++++.+...
T Consensus 314 ~~~~----~~~vi~~SA~~g----------~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLD----FAPIVFISALTG----------QGVDKLLDAIDEV 342 (429)
T ss_pred ccCC----CCceEEEeCCCC----------CCHHHHHHHHHHH
Confidence 4432 379999999999 8888888877653
No 87
>KOG0468|consensus
Probab=99.83 E-value=6.4e-19 Score=178.22 Aligned_cols=132 Identities=26% Similarity=0.327 Sum_probs=109.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcc-ccccccccCCChhhhhcCceEEeeEEEE-----ecCCeeEEEEeC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKS-KFITFDQIDRAPEEKARGITINIAHVEY-----STNTRHYAHTDC 115 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~-~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-----~~~~~~i~liDt 115 (463)
....+||+++||-.||||+|+..|........+. ..+.....|.+..|++||.++....... +...+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3457899999999999999999996543322211 1112235799999999999998754433 234567899999
Q ss_pred CChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 116 PGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 116 PGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
|||.+|..++..+++.+|+++||||+.+|++-+|.+.+..+-....| +++|+||+|+.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 99999999999999999999999999999999999999999999999 89999999986
No 88
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3.9e-19 Score=183.78 Aligned_cols=160 Identities=28% Similarity=0.389 Sum_probs=126.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD-- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~-- 120 (463)
...++|+++|++|+|||||+++|++.. ........|.|.+.....+...+..+.++||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEE---------------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC---------------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 357999999999999999999997641 111223457888877777778888999999999643
Q ss_pred --------h-HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 121 --------Y-IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 121 --------f-~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
| ...+..++..+|++|+|+|+.+|...|+.+.+.++...+.| +++|+||+|+.+++..+++.+++...+.
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 314 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVDEKTMEEFKKELRRRLP 314 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCCHHHHHHHHHHHHHhcc
Confidence 2 13345678899999999999999999999999998888988 8899999999876666666667766654
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.. ..+|++++||+++ .++.++++.+..
T Consensus 315 ~~----~~~~i~~~SA~~~----------~gv~~l~~~i~~ 341 (435)
T PRK00093 315 FL----DYAPIVFISALTG----------QGVDKLLEAIDE 341 (435)
T ss_pred cc----cCCCEEEEeCCCC----------CCHHHHHHHHHH
Confidence 43 2479999999999 888888887765
No 89
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.3e-19 Score=177.73 Aligned_cols=159 Identities=27% Similarity=0.412 Sum_probs=134.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh---
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD--- 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~--- 120 (463)
..++|+++|.+++|||||+|+|++. ++.-.....|.|.|.....|+++++.|.+|||.|..+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge---------------eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE---------------ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC---------------ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 4699999999999999999999865 2222334458999999999999999999999999543
Q ss_pred -------h-HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH--HHHHHHHHHHHHHH
Q psy3124 121 -------Y-IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR--EIMELVELEVRDVL 190 (463)
Q Consensus 121 -------f-~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~--~~~~~i~~~i~~~l 190 (463)
| ...+..++..||.++||+||.+|...|..+.+.++...|.+ +|||+||+|+.+. ..+++.+++++..+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l 320 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKL 320 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHh
Confidence 3 34456778889999999999999999999999999999999 8899999999854 66778888888877
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..+++ .|++++||+++ .++.+|++++..
T Consensus 321 ~~l~~----a~i~~iSA~~~----------~~i~~l~~~i~~ 348 (444)
T COG1160 321 PFLDF----APIVFISALTG----------QGLDKLFEAIKE 348 (444)
T ss_pred ccccC----CeEEEEEecCC----------CChHHHHHHHHH
Confidence 76665 78999999999 788888777765
No 90
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.5e-18 Score=155.33 Aligned_cols=158 Identities=27% Similarity=0.370 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--- 121 (463)
.++|+++|++|+|||||+++|++..... .+...+.+.+.....+...+..+.++||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---------------ccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 5789999999999999999997642110 0112344444444455566778999999996432
Q ss_pred -------H-HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH--HHHHHHHHHHHHHHH
Q psy3124 122 -------I-KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR--EIMELVELEVRDVLT 191 (463)
Q Consensus 122 -------~-~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~--~~~~~i~~~i~~~l~ 191 (463)
. ..+...+..+|++++|+|+..+...+..+.+..+...+.| +++++||+|+.+. ...+.+.+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2334566789999999999998877777777777777877 8899999999854 445555555555443
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.. ...|++++||+++ .++.++++++..
T Consensus 146 ~~----~~~~~~~~Sa~~~----------~~i~~~~~~l~~ 172 (174)
T cd01895 146 FL----DYAPIVFISALTG----------QGVDKLFDAIDE 172 (174)
T ss_pred cc----cCCceEEEeccCC----------CCHHHHHHHHHH
Confidence 22 2378999999999 999999998865
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=4.1e-19 Score=158.89 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
||+++|+.|+|||||+++|+...... . ..... ....|+......+..++..+.++||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~---~-------~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY---K-------GLPPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc---c-------CCccc--ccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999997642110 0 00011 112233333344555688999999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCC-cHHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQ-MPQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+..+|++++|+|+.+.. .......+..+. ..++| +++++||+|+.+....+++.+.+.......+. ..+|
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALSVEEIKEVFQDKAEEIGR--RDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCCHHHHHHHhccccccccC--CceE
Confidence 8889999999999998643 122222332222 24678 88999999987543333333332222222222 3478
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++||+++ .|+++++++|..
T Consensus 146 ~~~~Sa~~g----------~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEG----------TGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCC----------cCHHHHHHHHhc
Confidence 999999999 999999998854
No 92
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=3.6e-18 Score=165.23 Aligned_cols=156 Identities=20% Similarity=0.150 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh-----
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY----- 121 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f----- 121 (463)
+|+++|.+|+|||||+|+|++..... .....+.|.+.....+...+..+.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~---------------vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI---------------TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee---------------cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 58999999999999999998642110 0001123333222223345567999999996432
Q ss_pred ---HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 122 ---IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 122 ---~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
...+..++..+|++++|+|++.+...+ ...+..+...+.| +++|+||+|+.+.... .+.+..+....++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~--- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDKL---LPLIDKYAILEDF--- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCHHHH---HHHHHHHHhhcCC---
Confidence 233456778999999999999865544 4455666677888 8899999999854332 2233333333222
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.+++++||+++ .|+++|+++|...+|+
T Consensus 139 -~~v~~iSA~~g----------~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 139 -KDIVPISALTG----------DNTSFLAAFIEVHLPE 165 (270)
T ss_pred -CceEEEecCCC----------CCHHHHHHHHHHhCCC
Confidence 37999999999 9999999999997764
No 93
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=2.2e-18 Score=152.02 Aligned_cols=148 Identities=23% Similarity=0.193 Sum_probs=109.6
Q ss_pred EEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH-----
Q psy3124 49 GTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK----- 123 (463)
Q Consensus 49 ~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~----- 123 (463)
+++|++|+|||||+++|++.... ..+...+.|.+.........+..+.++||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 57999999999999999754100 0111235555555555666778899999999988543
Q ss_pred ---HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 124 ---NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 124 ---~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
.....+..+|++++|+|+.++......+++..+...+.| +++|+||+|+.+.... ...+...++ .
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~-------~~~~~~~~~----~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE-------AAEFYSLGF----G 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH-------HHHHHhcCC----C
Confidence 345567889999999999988777777777888888888 8899999999864332 122333332 2
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+++++|++++ .+++++++.|.++
T Consensus 134 ~~~~~Sa~~~----------~gv~~l~~~l~~~ 156 (157)
T cd01894 134 EPIPISAEHG----------RGIGDLLDAILEL 156 (157)
T ss_pred CeEEEecccC----------CCHHHHHHHHHhh
Confidence 6899999999 9999999998763
No 94
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=4.2e-18 Score=160.24 Aligned_cols=160 Identities=24% Similarity=0.221 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh---
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD--- 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~--- 120 (463)
..-.|+++|.+|+|||||+|+|.+.....-. .....|-.....-+..++.++.|+||||...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS---------------~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVS---------------PKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeec---------------CCcchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 3567999999999999999999875221110 0112233333334556788999999999322
Q ss_pred -----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHH-HHHHHHHHHHHHHHcC
Q psy3124 121 -----YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREI-MELVELEVRDVLTAYG 194 (463)
Q Consensus 121 -----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~-~~~i~~~i~~~l~~~g 194 (463)
..+....++..+|++++|||+.++..+..+..+..++..+.| +++++||+|+..... +..+.+.+.. ...
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~~~~~~~~---~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLKLIAFLKK---LLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHHHHHHHHHh---hCC
Confidence 234456678889999999999998888777777777776778 789999999985543 2222222221 222
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+ ..++|+||+++ .+++.|++.+..++|.
T Consensus 146 f----~~ivpiSA~~g----------~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 146 F----KEIVPISALKG----------DNVDTLLEIIKEYLPE 173 (298)
T ss_pred c----ceEEEeecccc----------CCHHHHHHHHHHhCCC
Confidence 2 46899999999 9999999999998874
No 95
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.77 E-value=2.1e-18 Score=138.18 Aligned_cols=89 Identities=27% Similarity=0.480 Sum_probs=84.0
Q ss_pred CCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCc
Q psy3124 242 TSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQI 321 (463)
Q Consensus 242 ~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i 321 (463)
++||+|+|+++|++++.|++++|+|++|.|++||++.++|.+ ..++|++|+.++.++++|.|||+|++.|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 579999999999999999999999999999999999999976 568999999999999999999999999999999999
Q ss_pred ccceEEecCCC
Q psy3124 322 ERGMLLAKADT 332 (463)
Q Consensus 322 ~~G~vl~~~~~ 332 (463)
++||+||+++.
T Consensus 80 ~~G~vl~~~~~ 90 (91)
T cd03693 80 KRGDVAGDSKN 90 (91)
T ss_pred CCcCEEccCCC
Confidence 99999998753
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=6.6e-18 Score=167.42 Aligned_cols=153 Identities=25% Similarity=0.246 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh-----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD----- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~----- 120 (463)
..|+++|.+|+|||||+|+|++... .-.+...|+|-|..+...+|.++.+.+|||+|.++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~---------------AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI---------------AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee---------------eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 5799999999999999999986411 11233459999998889999999999999999763
Q ss_pred hHH----HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIK----NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~----~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
+.. .+..++..||++|+|||+.+|+.++..+....++..+.| +|+|+||+|-...+ +....+.++|+.
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e-------~~~~efyslG~g 140 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAE-------ELAYEFYSLGFG 140 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccCchhh-------hhHHHHHhcCCC
Confidence 333 345577889999999999999999999999999977788 89999999986321 222234566763
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.++++||.+| .|+.+|++.+...+|
T Consensus 141 ----~~~~ISA~Hg----------~Gi~dLld~v~~~l~ 165 (444)
T COG1160 141 ----EPVPISAEHG----------RGIGDLLDAVLELLP 165 (444)
T ss_pred ----CceEeehhhc----------cCHHHHHHHHHhhcC
Confidence 4789999999 999999999999876
No 97
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.77 E-value=6.7e-18 Score=152.26 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=105.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|+.++|||||+++|.+... . ..+...|.. ...+..++..+.++||||++.|.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-------------~--~~~~t~g~~----~~~~~~~~~~l~l~D~~G~~~~~ 72 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-------------D--TISPTLGFQ----IKTLEYEGYKLNIWDVGGQKTLR 72 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-------------C--CcCCccccc----eEEEEECCEEEEEEECCCCHHHH
Confidence 3457899999999999999999975300 0 000111211 12233456789999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH----HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLS----KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+.+.. +....+++... ...++| +++|+||+|+..... .+++.+.++......
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~ 147 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGALS----EEEIREALELDKISS 147 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCCC----HHHHHHHhCccccCC
Confidence 77777888999999999998753 22222223222 224666 889999999974321 223444443322333
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..+|++++||+++ .|+++++++|.+
T Consensus 148 ~~~~~~~~Sa~~g----------~gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTG----------EGLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCC----------cCHHHHHHHHhc
Confidence 4579999999999 999999998753
No 98
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=1.1e-17 Score=174.09 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=118.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA---- 119 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~---- 119 (463)
..++|+++|++++|||||+++|++... .......|.|.+.....+..++..+.|+||||..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~---------------~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER---------------SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc---------------ccccCCCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 468999999999999999999976411 1112234666666555666778889999999952
Q ss_pred -----hhHHHH--HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 120 -----DYIKNM--ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 120 -----~f~~~~--~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
.+...+ ...+..+|++++|+|++++...+..+.+..+...+.| +|+|+||+|+.+.+......+++.+.+..
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~~~~~~~~i~~~l~~ 353 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDRRYYLEREIDRELAQ 353 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChhHHHHHHHHHHHhccc
Confidence 222222 3456889999999999999988888888877778888 89999999998644434444455544433
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
. ..+|++++||+++ .+++++++.+...+
T Consensus 354 ~----~~~~~~~~SAk~g----------~gv~~lf~~i~~~~ 381 (472)
T PRK03003 354 V----PWAPRVNISAKTG----------RAVDKLVPALETAL 381 (472)
T ss_pred C----CCCCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 2 2378999999999 88888888886643
No 99
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=1.4e-17 Score=165.70 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=119.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD-- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~-- 120 (463)
....+|+++|++|+|||||+++|.+..... .....+.|.+.....+..++..+.|+||||..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i---------------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI---------------VTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee---------------ccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 345799999999999999999997541100 001123344333344556778899999999743
Q ss_pred ------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 121 ------YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 121 ------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
+.......+..+|++++|+|+.++........+..+...+.| .|+|+||+|+.+. .. .++.+.+...+
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p-~IlViNKiDl~~~-~~----~~~~~~l~~~~ 188 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV-PIFLLNKIDIESK-YL----NDIKAFLTENH 188 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhhcCccc-cH----HHHHHHHHhcC
Confidence 222333457889999999999887766666667777777888 4678999999753 12 23344443322
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC------CCCCCCceeeeEEE
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV------RDITSPFILPIDNA 252 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~------~~~~~p~~~~I~~~ 252 (463)
...+++++||+++ .|+++|+++|...+|... ...+.|.++.+.++
T Consensus 189 ---~~~~i~~iSAktg----------~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~ei 239 (339)
T PRK15494 189 ---PDSLLFPISALSG----------KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEI 239 (339)
T ss_pred ---CCcEEEEEeccCc----------cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 2357999999999 999999999998776421 23355556555544
No 100
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.76 E-value=2.2e-17 Score=149.91 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=107.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh---
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH--- 118 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh--- 118 (463)
.....+|+++|++|+|||||+++|++.... + ......|.|.+...... + ..+.++||||+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~-------------~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~ 77 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL-A-------------RTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYA 77 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c-------------cccCCCCcceEEEEEEe--C-CcEEEEeCCCCccc
Confidence 345789999999999999999999764100 0 00112245555443333 2 36999999995
Q ss_pred -------hhhHHHHH---hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 119 -------ADYIKNMI---SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 119 -------~~f~~~~~---~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
.+|...+. .....+|++++|+|++.+...++.+++..+...++| +++++||+|+.++...+...+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~i~~ 156 (179)
T TIGR03598 78 KVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKKSELNKQLKKIKK 156 (179)
T ss_pred cCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHH
Confidence 23433332 333457899999999998888888888888888988 8899999999876666667778888
Q ss_pred HHHHcCCCCCCCcEEEccchhh
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
.+...+ ...+++++||+++
T Consensus 157 ~l~~~~---~~~~v~~~Sa~~g 175 (179)
T TIGR03598 157 ALKKDA---DDPSVQLFSSLKK 175 (179)
T ss_pred HHhhcc---CCCceEEEECCCC
Confidence 887653 2357999999998
No 101
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.3e-17 Score=170.38 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=119.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh--------
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH-------- 118 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh-------- 118 (463)
+|+++|++|+|||||+++|++.... ..+...|+|.+.......+.+..+.++||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~---------------~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA---------------IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc---------------eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 4899999999999999999764110 11123477777766777788899999999997
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
+.+...+..++..+|++++|+|+.++......+.+..++..+.| +++|+||+|+.+.+.. .. .+..+|+
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~------~~-~~~~lg~--- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAV------AA-EFYSLGF--- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCccccc------HH-HHHhcCC---
Confidence 44556677788999999999999999998888888888888988 8899999998743311 11 1234454
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
.+++++||.++ .++.+|++.+...++..
T Consensus 135 -~~~~~vSa~~g----------~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 135 -GEPIPISAEHG----------RGIGDLLDAILELLPEE 162 (429)
T ss_pred -CCeEEEeCCcC----------CChHHHHHHHHHhcCcc
Confidence 35899999999 89999999998877653
No 102
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=3.8e-17 Score=146.02 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=104.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYI 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~ 122 (463)
.++|+++|+.|+|||||+++|..... ..+....++.+.....+...+ ..+.++||||+++|.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF----------------SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC----------------cccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 58999999999999999999964310 011111222222223333344 578899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
......++.+|++++|+|+++...-+. ...+..... .++| +++|.||+|+..... ...++..++.+..+.
T Consensus 67 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--- 140 (165)
T cd01864 67 TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQRE--VLFEEACTLAEKNGM--- 140 (165)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccc--cCHHHHHHHHHHcCC---
Confidence 888888899999999999988543222 223333322 3566 889999999974321 112234444444332
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+++++||+++ .+++++++.|..
T Consensus 141 -~~~~e~Sa~~~----------~~v~~~~~~l~~ 163 (165)
T cd01864 141 -LAVLETSAKES----------QNVEEAFLLMAT 163 (165)
T ss_pred -cEEEEEECCCC----------CCHHHHHHHHHH
Confidence 46899999999 899999998865
No 103
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=6.4e-17 Score=158.43 Aligned_cols=159 Identities=25% Similarity=0.235 Sum_probs=109.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--- 121 (463)
...|+++|++|+|||||+++|++..... ... ..+.|.+.....+..++..+.++||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~---------vs~------~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI---------VSP------KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee---------cCC------CCCcccccEEEEEEcCCceEEEEECCCCCCchhH
Confidence 4679999999999999999997641110 000 0111222211222335578999999996432
Q ss_pred -----HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 -----IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 -----~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~ 195 (463)
.......+..+|++++|+|++++......+.+..+...+.| +++|+||+|+. +........+.+.+ ..+
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~l~~~~~~l~~---~~~- 144 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEELLPLLEELSE---LMD- 144 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHHHHHHHHHHHh---hCC-
Confidence 34445567889999999999987766677777777767778 88999999998 44443333333322 222
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
..+++++||+++ .++++|++.|...+|+
T Consensus 145 ---~~~i~~iSA~~~----------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 ---FAEIVPISALKG----------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ---CCeEEEecCCCC----------CCHHHHHHHHHHhCCC
Confidence 367999999999 9999999999987754
No 104
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=1.2e-16 Score=146.96 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=112.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh----
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH---- 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh---- 118 (463)
...++|+++|++|+|||||+++|++... ........|.|..+....+ +..+.|+||||+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN--------------LARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcC
Confidence 3468999999999999999999976310 0001112245555443332 367999999995
Q ss_pred ------hhhHHHHH---hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 119 ------ADYIKNMI---SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 119 ------~~f~~~~~---~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
++|..... .....++++++|+|+..+......+.+..+...++| +++++||+|+.+....+...+++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~i~~~ 163 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGERKKQLKKVRKA 163 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHHHHHHHHHHHH
Confidence 33433333 333455789999999887766666666777778888 88999999998765555555666666
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+... ..+++++||+++ .+++++++.|...+.
T Consensus 164 l~~~-----~~~~~~~Sa~~~----------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 164 LKFG-----DDEVILFSSLKK----------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHhc-----CCceEEEEcCCC----------CCHHHHHHHHHHHhc
Confidence 6543 367999999999 899999999887543
No 105
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.74 E-value=3.4e-17 Score=146.74 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe-eEEEEeCCChhh-----
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR-HYAHTDCPGHAD----- 120 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPGh~~----- 120 (463)
+|+++|++|+|||||+++|++.....+. ..+.|.+.....+...+. .+.|+||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 6999999999999999999754211110 012233332233444554 899999999632
Q ss_pred --hHHHHHhhcccCCEEEEEEeCCCC-CcHHH-HHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 121 --YIKNMISGASQMDGAIVVVAASEG-QMPQT-REHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 121 --f~~~~~~~~~~aD~ailVVda~~g-~~~qt-~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
+...+.+.+..+|++++|+|+++. ...+. ......+.. .+.| +++|+||+|+.+.....+ .+..++.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~---~~~~~~~ 141 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEELFE---LLKELLK 141 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchhhHH---HHHHHHh
Confidence 334455556779999999999986 22222 222222322 2556 789999999976443322 2333333
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.. ...+++++||+++ .++.++++.|.+
T Consensus 142 ~~----~~~~~~~~Sa~~~----------~gi~~l~~~i~~ 168 (170)
T cd01898 142 EL----WGKPVFPISALTG----------EGLDELLRKLAE 168 (170)
T ss_pred hC----CCCCEEEEecCCC----------CCHHHHHHHHHh
Confidence 22 2367999999999 999999998876
No 106
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.74 E-value=1.5e-17 Score=132.06 Aligned_cols=85 Identities=28% Similarity=0.388 Sum_probs=80.2
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecC--CceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcc
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGF--NSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIE 322 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~--~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 322 (463)
|+|+|+++|++++.|+|++|+|++|.+++||++.++|. +++..++|++|+.++.++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 57999999999999999999999999999999999997 4457899999999999999999999999999999999999
Q ss_pred cceEEec
Q psy3124 323 RGMLLAK 329 (463)
Q Consensus 323 ~G~vl~~ 329 (463)
+||+||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 107
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.74 E-value=1.3e-17 Score=135.78 Aligned_cols=91 Identities=27% Similarity=0.472 Sum_probs=79.3
Q ss_pred ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC-----CCC--CccccCCCEEEEEEEeceEEeec
Q psy3124 333 LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP-----GED--DGMLMPGEHGTVTMTLLYKMYLS 405 (463)
Q Consensus 333 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----~~~--~~~l~~g~~~~v~~~~~~p~~~~ 405 (463)
++++++|+|+|.+|+++ +||..||++++|+++.+++|++... .++ +++|++||.|.|+|++.+|+|++
T Consensus 2 ~k~~~~f~A~v~vl~~~-----~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~~pi~ve 76 (99)
T PF03143_consen 2 IKAVNRFEAQVIVLDHP-----KPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQKPICVE 76 (99)
T ss_dssp SEEEEEEEEEEEESSGS-----S-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEEEEEEET
T ss_pred CcccCEEEEEEEEEcCC-----ccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeeccceeee
Confidence 56789999999999984 7999999999999999999987743 332 37999999999999999999999
Q ss_pred cCCeEEEEeCCceEEEEEEeeec
Q psy3124 406 KGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 406 ~~~rfilr~~~~tig~G~V~~~~ 428 (463)
+++||+|||+|+|+|+|.|+++.
T Consensus 77 ~~~Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 77 PFSRFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp TTTEEEEEETTEEEEEEEEEEE-
T ss_pred cCceEEEccCCeEEEEEEEEEeC
Confidence 99999999999999999999873
No 108
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.74 E-value=6.3e-17 Score=144.00 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|+.++|||||+++|++..... ......|.+.......+......+.++|+||+++|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 689999999999999999997541110 011222333333344454455678899999999998877
Q ss_pred HhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 126 ISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
...++.+|++++|+|+++.. ..+....+..+... ++| +++++||+|+.+.... -.+++..+....+ ++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~--~~~~~~~~~~~~~-----~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV--STEEAQEYADENG-----LL 139 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC--CHHHHHHHHHHcC-----CE
Confidence 77888999999999998643 23334444444443 355 8899999998732111 1123334444433 67
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++||+++ .++.++++.|.+.+
T Consensus 140 ~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd01860 140 FFETSAKTG----------ENVNELFTEIAKKL 162 (163)
T ss_pred EEEEECCCC----------CCHHHHHHHHHHHh
Confidence 999999999 99999999988754
No 109
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=7.9e-17 Score=143.41 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|.+++|||||++++.+.... ....+. .+... .....+......+.++||||+++|...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-----------~~~~~t---~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-----------TDYDPT---IEDSY-TKQCEIDGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-----------cccCCC---ccceE-EEEEEECCEEEEEEEEECCCCcchhHH
Confidence 479999999999999999999754110 000000 00000 111122222356889999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMP-QTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
+...+..+|++++|+|+++.... ...+.+.... ..++| +++++||+|+.+..... .++..++.+..+
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~--~~~~~~~~~~~~----- 138 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVS--REEGQELARKLK----- 138 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceec--HHHHHHHHHHcC-----
Confidence 88888999999999999874321 1122222222 23667 88999999997432111 123444444433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+++ .|++++++.|...
T Consensus 139 ~~~~~~Sa~~~----------~~i~~l~~~l~~~ 162 (164)
T cd04145 139 IPYIETSAKDR----------LNVDKAFHDLVRV 162 (164)
T ss_pred CcEEEeeCCCC----------CCHHHHHHHHHHh
Confidence 57999999999 9999999988753
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.73 E-value=3.8e-17 Score=145.17 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|..++|||||+++|++...... ......|.+. ..+...+..+.++||||+++|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------------IIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------------eecCccccce----EEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999975311000 0001112222 22445678899999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH------HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 127 SGASQMDGAIVVVAASEGQM-PQTREHLLLSK------QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~------~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
..+..+|++++|+|+++... ....+.+..+. ..++| +++|+||+|+.++...+ ++.+.+.........
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~----~~~~~l~~~~~~~~~ 138 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALTAV----KITQLLGLENIKDKP 138 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCCHH----HHHHHhCCccccCce
Confidence 88899999999999987542 22222332221 13677 88999999997532212 222222111111123
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++++||+++ .|+++++++|.+
T Consensus 139 ~~~~~~Sa~~g----------~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTG----------EGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCC----------CchHHHHHHHhc
Confidence 56899999999 999999998864
No 111
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=8.7e-17 Score=143.88 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh-----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD----- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~----- 120 (463)
++|+++|++|+|||||+++|++.... .+...+.|.+.....+...+..+.|+||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 47999999999999999999764211 011123344444444555678999999999842
Q ss_pred --hH-HHHHhhc-ccCCEEEEEEeCCCCCc---HHHHHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 121 --YI-KNMISGA-SQMDGAIVVVAASEGQM---PQTREHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 121 --f~-~~~~~~~-~~aD~ailVVda~~g~~---~qt~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
+. ......+ ..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+...... ..++.+
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~----~~~~~~ 139 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFEDLSE----IEEEEE 139 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhhHHH----HHHhhh
Confidence 11 1112222 34699999999986432 2222334444433 667 899999999985543332 222221
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
. ...|++++||+++ .|+++++++|...
T Consensus 140 ~-----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 166 (168)
T cd01897 140 L-----EGEEVLKISTLTE----------EGVDEVKNKACEL 166 (168)
T ss_pred h-----ccCceEEEEeccc----------CCHHHHHHHHHHH
Confidence 1 2478999999999 9999999998764
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.73 E-value=1.4e-16 Score=142.01 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|+.++|||||++++....... ......+.++......+......+.++||||+++|....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP--------------QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--------------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 479999999999999999997531100 000111222222222333344568899999999999888
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
...+..+|++++|+|+++....+. .+.+...... ++| +++|+||+|+.... ..+..++.+.. .+|+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~~-----~~~~~~~~~~~-----~~~~ 135 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPSV-----TQKKFNFAEKH-----NLPL 135 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchhH-----HHHHHHHHHHc-----CCeE
Confidence 888999999999999987554332 3333444333 677 88999999985321 11222333322 3689
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+++||+++ .+++++++.+...
T Consensus 136 ~~~Sa~~~----------~gv~~l~~~l~~~ 156 (161)
T cd04124 136 YYVSAADG----------TNVVKLFQDAIKL 156 (161)
T ss_pred EEEeCCCC----------CCHHHHHHHHHHH
Confidence 99999999 9999999988763
No 113
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.73 E-value=2.2e-17 Score=129.94 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=78.7
Q ss_pred CceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCccc
Q psy3124 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIER 323 (463)
Q Consensus 244 p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 323 (463)
||+|+|+++|+++ .|++++|+|++|++++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7999999999999 99999999999999999999999976 45899999999999999999999999999998899999
Q ss_pred ceEEec
Q psy3124 324 GMLLAK 329 (463)
Q Consensus 324 G~vl~~ 329 (463)
||+|++
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999984
No 114
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.73 E-value=2.3e-17 Score=131.04 Aligned_cols=87 Identities=51% Similarity=0.929 Sum_probs=80.9
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccc
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERG 324 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 324 (463)
|+|+|+++|++++.|++++|+|++|++++||++.++|.+.+..++|++|+.++.++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986444678999999999999999999999999999988999999
Q ss_pred eEEecCC
Q psy3124 325 MLLAKAD 331 (463)
Q Consensus 325 ~vl~~~~ 331 (463)
|+|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999863
No 115
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.73 E-value=5.6e-17 Score=142.20 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~~ 123 (463)
.||+++|++|+|||||+++|.... .+.+...+++.+.....+...+ ..+.++|+||+.+|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 689999999999999999997541 2223334566665554455555 6788999999998843
Q ss_pred -------HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 124 -------NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 124 -------~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.+...+...|.+++|+|+.++...........+.. ++| +++++||+|+.... ...+....+...+
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~----~~~~~~~~~~~~~-- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK----LKTHVAFLFAKLN-- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch----hhHHHHHHHhhcc--
Confidence 34444455566666666655443444444444433 777 88999999998643 2334444455443
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
..|++++||..+ .++.+++++|.
T Consensus 138 --~~~~~~~sa~~~----------~gv~~~~~~l~ 160 (161)
T TIGR00231 138 --GEPIIPLSAETG----------KNIDSAFKIVE 160 (161)
T ss_pred --CCceEEeecCCC----------CCHHHHHHHhh
Confidence 357999999999 89999988874
No 116
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.73 E-value=1.3e-16 Score=141.90 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE--EEEe--cCCeeEEEEeCCChhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH--VEYS--TNTRHYAHTDCPGHADY 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~--~~~~~i~liDtPGh~~f 121 (463)
++|+++|..++|||||+++|++.... .+....+..+... ..+. .....+.++||||+++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT----------------KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 37999999999999999999754111 0111122233222 2232 23457889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH-HHHH--HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHL-LLSK--QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l-~~~~--~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
...+...++.+|++++|+|+.+....+....+ .... ..++| +++|+||+|+.++.... .++...+.+.++
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~--~~~~~~~~~~~~---- 137 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVIT--NEEAEALAKRLQ---- 137 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCC--HHHHHHHHHHcC----
Confidence 88888888999999999999875432222222 1121 23677 88999999997432211 123444444444
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+|++++||+++ .+++++++.|..
T Consensus 138 -~~~~~~Sa~~~----------~~v~~l~~~l~~ 160 (162)
T cd04106 138 -LPLFRTSVKDD----------FNVTELFEYLAE 160 (162)
T ss_pred -CeEEEEECCCC----------CCHHHHHHHHHH
Confidence 58999999999 899999998865
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=6.7e-17 Score=143.39 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|+.++|||||+++|..... .+. . .|+......++..+..+.++||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~------------~~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV------------VTT---I----PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC------------cCc---C----CccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 589999999999999999954210 000 0 111111123344667899999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCCc-HHHHHHHHH-HHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQM-PQTREHLLL-SKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~-~qt~e~l~~-~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+..+|++++|+|+++... ....+.+.. +.. .+.| +++|+||+|+.+..... ++.+.+..........+
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~ 136 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALSEA----EISEKLGLSELKDRTWS 136 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCCHH----HHHHHhCccccCCCcEE
Confidence 88899999999999987432 222333322 221 3566 89999999997432112 22222211112223368
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++||+++ .|++++++.|.+
T Consensus 137 ~~~~Sa~~~----------~gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKG----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCC----------CCHHHHHHHHhc
Confidence 999999999 999999998854
No 118
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=3.7e-17 Score=144.53 Aligned_cols=147 Identities=23% Similarity=0.265 Sum_probs=102.3
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH-----
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN----- 124 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~----- 124 (463)
++|+.|+|||||+++|++..... ....++|.+.....+++.+..+.++||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV----------------GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc----------------cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 58999999999999997642111 112366776655666677788999999999876431
Q ss_pred -HHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 125 -MISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 125 -~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
+...+ ..+|++++|+|+.... +....+..+...++| +++|+||+|+.+...... +...+.+.++ .|
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~---~~~~~~~~~~-----~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLP-VVVALNMIDEAEKRGIKI---DLDKLSELLG-----VP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCC-EEEEEehhhhcccccchh---hHHHHHHhhC-----CC
Confidence 22233 4899999999998742 223344455667888 889999999985432222 2223333333 68
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++||.++ .++.++++.|...
T Consensus 134 ~~~iSa~~~----------~~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKG----------EGIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCC----------CCHHHHHHHHHHH
Confidence 999999999 8999999988763
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=1.1e-16 Score=174.43 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=119.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA---- 119 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~---- 119 (463)
..++|+++|++|+|||||+++|++... .......|.|.+.....+..++..+.|+||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~---------------~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER---------------AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc---------------cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcc
Confidence 358999999999999999999976411 0011234666666555666778889999999953
Q ss_pred -----hhHHHH--HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 120 -----DYIKNM--ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 120 -----~f~~~~--~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
+|...+ ..++..+|++++|+|++++...+....+..+...+.| +++|+||+|+.+.+..+.+.+++...+..
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~~~~~~~~~~~~l~~ 592 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFRRQRLERLWKTEFDR 592 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhHHHHHHHHHHHhccC
Confidence 233322 3456889999999999999999988888878778888 88999999998654444444444443322
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
. ...|++++||+++ .|+.+|++.+....+
T Consensus 593 ~----~~~~ii~iSAktg----------~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 593 V----TWARRVNLSAKTG----------WHTNRLAPAMQEALE 621 (712)
T ss_pred C----CCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 1 2478999999999 889999888877544
No 120
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.72 E-value=8.9e-17 Score=141.58 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH--
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK-- 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~-- 123 (463)
.+|+++|++|+|||||+++|++.... ......+.|.+.....+...+..+.++||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA---------------IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE---------------eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 47999999999999999999754110 0001235566665556666778999999999876532
Q ss_pred ------HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 124 ------NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 124 ------~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
.+...+..+|++++|+|+.........+.+.. ..+.| +++|+||+|+.+.... . ...
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~----------~----~~~ 129 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL----------L----SLL 129 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc----------c----ccc
Confidence 23456678999999999997544333332222 34566 8999999999854322 1 111
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
...|++++||.++ .++++|+++|...
T Consensus 130 ~~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 155 (157)
T cd04164 130 AGKPIIAISAKTG----------EGLDELKEALLEL 155 (157)
T ss_pred CCCceEEEECCCC----------CCHHHHHHHHHHh
Confidence 3478999999999 8999999998763
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=2.1e-16 Score=164.62 Aligned_cols=155 Identities=23% Similarity=0.235 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh----
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD---- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~---- 120 (463)
..+|+++|.+|+|||||+++|++... ...+...|+|.+.......+.+..+.++||||++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~---------------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 102 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRRE---------------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG 102 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCc---------------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchh
Confidence 47899999999999999999976311 11123447788777777778888999999999763
Q ss_pred ----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 ----YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 ----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
+...+..++..||++|+|+|++++......+.+..+...+.| +++|+||+|+..... +..+ +...++.
T Consensus 103 ~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~------~~~~-~~~~g~~ 174 (472)
T PRK03003 103 LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEA------DAAA-LWSLGLG 174 (472)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccch------hhHH-HHhcCCC
Confidence 344455677889999999999998877666777777778888 899999999864211 1111 1233442
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
. .+++||+++ .|+.+|++.|...++.
T Consensus 175 ---~-~~~iSA~~g----------~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 175 ---E-PHPVSALHG----------RGVGDLLDAVLAALPE 200 (472)
T ss_pred ---C-eEEEEcCCC----------CCcHHHHHHHHhhccc
Confidence 2 368999999 9999999999887754
No 122
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=1.2e-16 Score=142.14 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEecCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
.||+++|+.++|||||+++|...... .+.....+.+.. ...+......+.++|+||+++|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK----------------EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH
Confidence 47999999999999999999754111 011112222222 223333335688999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.....++.+|++++|+|+++....+. .+.+..... .++| +++|.||+|+.+.... ..+++..+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~--~~~~~~~~~~~~~----- 136 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREV--TFLEASRFAQENG----- 136 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC--CHHHHHHHHHHcC-----
Confidence 88888899999999999988654333 222232222 3666 8899999999743211 1234444555443
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++.+||+++ .++.++++.+..
T Consensus 137 ~~~~~~Sa~~~----------~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFLETSALTG----------ENVEEAFLKCAR 159 (161)
T ss_pred CEEEEEECCCC----------CCHHHHHHHHHH
Confidence 67999999999 999999998865
No 123
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=7.4e-17 Score=143.35 Aligned_cols=141 Identities=22% Similarity=0.326 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh----hhhH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH----ADYI 122 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh----~~f~ 122 (463)
+|+++|++++|||||+++|.+... . + ..|.. ..+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~------------~-----~---~~~~~---v~~~~~----~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT------------L-----A---RKTQA---VEFNDK----GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc------------c-----C---ccceE---EEECCC----CcccCCccccCCHHHH
Confidence 699999999999999999975310 0 0 01111 122222 26999995 5677
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
..+..++..+|++++|+|++++....+...+.. ..+.| +++++||+|+.+.+ . +.+.+++++.++ ..|+
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~-~----~~~~~~~~~~~~---~~p~ 124 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD-V----AATRKLLLETGF---EEPI 124 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc-H----HHHHHHHHHcCC---CCCE
Confidence 778888899999999999998764433332221 23556 88999999996432 1 234555666554 2699
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+++||+++ .++++|++.|.+.++
T Consensus 125 ~~~Sa~~g----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 125 FELNSHDP----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEECCCc----------cCHHHHHHHHHHhch
Confidence 99999999 999999999988554
No 124
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.72 E-value=1.2e-16 Score=128.67 Aligned_cols=92 Identities=50% Similarity=0.846 Sum_probs=84.4
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEe
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRE 414 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~ 414 (463)
++++|+|++.+|++.++++++||..||++++|+++.++.|++...++ ++.|++||.+.|+|+|.+|+++++++||+||+
T Consensus 2 ~~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~-~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~ 80 (93)
T cd03706 2 PHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPG-KEMVMPGEDTKVTLILRRPMVLEKGQRFTLRD 80 (93)
T ss_pred cceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCC-CcEeCCCCEEEEEEEECCcEEEeeCCEEEEEE
Confidence 36899999999998777777899999999999999999999988754 37899999999999999999999999999999
Q ss_pred CCceEEEEEEeee
Q psy3124 415 NNKLVATGIVTKV 427 (463)
Q Consensus 415 ~~~tig~G~V~~~ 427 (463)
+++|+|+|+|+++
T Consensus 81 ~~~tvg~G~V~~~ 93 (93)
T cd03706 81 GNRTIGTGLVTDT 93 (93)
T ss_pred CCEEEEEEEEEeC
Confidence 9999999999864
No 125
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=3.7e-16 Score=138.62 Aligned_cols=156 Identities=25% Similarity=0.213 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--- 121 (463)
..+|+++|++|+|||||+++|++...... ......+.......+...+..+.++||||..+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIV---------------SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEec---------------cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 57899999999999999999975411000 000112222222234445678999999996542
Q ss_pred -----HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 -----IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 -----~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~ 195 (463)
.......+..+|++++|+|+.+.........+..+...+.| +++++||+|+. ..+......+.+.. ..
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~-- 141 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPLLEKLKE---LG-- 141 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHHHHHHHHHHHh---cc--
Confidence 23344567889999999999987555555566666667788 88999999998 34333333322222 11
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
...|++++|++++ .+++++++.|.+.
T Consensus 142 --~~~~~~~~s~~~~----------~~~~~l~~~l~~~ 167 (168)
T cd04163 142 --PFAEIFPISALKG----------ENVDELLEEIVKY 167 (168)
T ss_pred --CCCceEEEEeccC----------CChHHHHHHHHhh
Confidence 2368999999999 8999999988763
No 126
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.71 E-value=2e-16 Score=140.70 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~~ 123 (463)
++|+++|++++|||||+++|++.... ......++.+.....+...+ ..+.++|+||+..|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 47999999999999999999754111 11111223333223333333 5788999999999998
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHL-LLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l-~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.....+..+|++++|+|+++....+....+ ..... .++| +++|+||+|+....... .+.+.++.+..+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~--~~~~~~~~~~~~----- 136 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVS--REEAEAFAEEHG----- 136 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCC--HHHHHHHHHHcC-----
Confidence 888888999999999999875433332222 22222 3566 89999999987422111 123333444433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++|+.++ .+++++++.|...+
T Consensus 137 ~~~~e~Sa~~~----------~~i~~l~~~i~~~~ 161 (164)
T smart00175 137 LPFFETSAKTN----------TNVEEAFEELAREI 161 (164)
T ss_pred CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999999987644
No 127
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.4e-16 Score=139.18 Aligned_cols=162 Identities=21% Similarity=0.224 Sum_probs=117.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh---
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH--- 118 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh--- 118 (463)
+....-|+++|.+|+|||||+|+|++... -.......|.|..+.++.+... +.|+|.||.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~--------------LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyA 83 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKN--------------LARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYA 83 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcc--------------eeecCCCCCccceeEEEEecCc---EEEEeCCCcccc
Confidence 33578899999999999999999987421 0112234588887776665432 889999993
Q ss_pred -------hhhHHHHHhhc---ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 119 -------ADYIKNMISGA---SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 119 -------~~f~~~~~~~~---~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
+.+-..+..++ ....+++++||+++++....++.+..+...++| ++|++||||.++..........+++
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~l~~v~~ 162 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQLNKVAE 162 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHHHHHHHH
Confidence 22222222333 347889999999999999999999999999999 8899999999976655555555554
Q ss_pred HHHHcCCCCCCCc-EEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 189 VLTAYGYDGDNTP-FVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 189 ~l~~~g~~~~~~p-vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+. +....-+ ++..|+..+ .|+++|.+.|...+
T Consensus 163 ~l~---~~~~~~~~~~~~ss~~k----------~Gi~~l~~~i~~~~ 196 (200)
T COG0218 163 ELK---KPPPDDQWVVLFSSLKK----------KGIDELKAKILEWL 196 (200)
T ss_pred Hhc---CCCCccceEEEEecccc----------cCHHHHHHHHHHHh
Confidence 443 3222222 777888887 88999999888754
No 128
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=2.7e-16 Score=138.32 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|++++|||||+++|.+...... .....+.+..............+.++|+||+..|....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH
Confidence 4799999999999999999975421110 01112223333333333344678899999999999988
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
...+..+|++++|+|+.+... ......+...... +.| +++++||+|+..+.. ...+++.++.... .++
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~--~~~~~~~~~~~~~-----~~~ 138 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQ--VSTEEAQQFAKEN-----GLL 138 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEccccccccc--ccHHHHHHHHHHc-----CCe
Confidence 888999999999999987432 2223334344443 366 889999999962211 1223444544442 378
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
++.+|++++ .++.+++++|.
T Consensus 139 ~~~~sa~~~----------~~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTG----------ENVEELFQSLA 158 (159)
T ss_pred EEEEecCCC----------CCHHHHHHHHh
Confidence 999999999 89999998874
No 129
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=1.4e-16 Score=143.78 Aligned_cols=154 Identities=19% Similarity=0.147 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|+.++|||||+++|+..... .. ..|+......+..+...+.++||||++.|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV------------HT-------SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC------------Cc-------CCccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 578999999999999999999643110 00 11222222344556788999999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM-PQTREHL-LLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~-~qt~e~l-~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
+...+..+|++++|+|+++... ....+.+ .++.. .++| +++++||+|+......+ ++.+.+.........
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~~~----~i~~~l~~~~~~~~~ 150 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMTPA----EISESLGLTSIRDHT 150 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCCHH----HHHHHhCcccccCCc
Confidence 8888899999999999987532 1222222 22222 2466 89999999986421112 222222211112234
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++++||+++ .|+++++++|.+
T Consensus 151 ~~~~~~SA~~g----------~gi~e~~~~l~~ 173 (174)
T cd04153 151 WHIQGCCALTG----------EGLPEGLDWIAS 173 (174)
T ss_pred eEEEecccCCC----------CCHHHHHHHHhc
Confidence 68999999999 999999998864
No 130
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=9.7e-17 Score=142.16 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|+.++|||||++++++..... ....-+.+. ..+......+.++|+||++.|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~---------------~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT---------------TIPTIGFNV----ETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC---------------CCCCcCcce----EEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999997642100 000112222 23444577899999999999877777
Q ss_pred hhcccCCEEEEEEeCCCCC-cHHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQ-MPQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+..+|++++|+|+..+. .....+++.... ..+.| +++|+||+|+......+++. +.+.........+|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~ 136 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGALSVSELI----EKLGLEKILGRRWH 136 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccccCHHHHH----HhhChhhccCCcEE
Confidence 7788999999999999752 233334443322 23667 88999999998543223333 22222212234578
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++||+++ .|++++++.|..
T Consensus 137 ~~~~Sa~~~----------~gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTG----------DGLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCC----------CCHHHHHHHHhh
Confidence 999999999 999999998864
No 131
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=5.1e-16 Score=143.51 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=104.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh-----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH----- 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh----- 118 (463)
...+|+++|.+|+|||||+++|++... ..+...|+|.+.....+ . .+.++||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNHYDW--G--DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceEEee--c--ceEEEeCCccccccc
Confidence 357899999999999999999975411 11123366665443332 2 5899999993
Q ss_pred ------hhhHHHHH----hhcccCCEEEEEEeCCCC-----------CcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH
Q psy3124 119 ------ADYIKNMI----SGASQMDGAIVVVAASEG-----------QMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE 177 (463)
Q Consensus 119 ------~~f~~~~~----~~~~~aD~ailVVda~~g-----------~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~ 177 (463)
+.|...+. .++..+|++++|+|+... ...++.+.+..+...++| +++|+||+|+.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH
Confidence 44443322 245567999999999642 233556677777778998 78999999997543
Q ss_pred HHHHHHHHHHHHHHHcCCC----CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC
Q psy3124 178 IMELVELEVRDVLTAYGYD----GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV 238 (463)
Q Consensus 178 ~~~~i~~~i~~~l~~~g~~----~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~ 238 (463)
++..+++.+ .++.. ....|++++||+++ |+++++++|...++.-.
T Consensus 147 --~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 147 --DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred --HHHHHHHHH---HhcCCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCcc
Confidence 222223333 33331 11247899999874 78899999988665443
No 132
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=3.3e-16 Score=140.18 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|+.++|||||+++|...... ...+. .....++. ..+......+.++||||++++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~------------~~~~~-~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP------------ENVPR-VLPEITIP---ADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC------------ccCCC-cccceEee---eeecCCeEEEEEEeCCCchhhhHHHh
Confidence 7999999999999999999753110 00000 00011221 12333456789999999998887777
Q ss_pred hhcccCCEEEEEEeCCCCCcHHHH-H-HHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQTR-E-HLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~qt~-e-~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
..+..+|++++|+|++++..-+.. + ++..++. .++| +++|+||+|+.+........+++..+.+.+. ...++
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~ 141 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQAGLEEEMLPIMNEFR---EIETC 141 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchhHHHHHHHHHHHHHh---cccEE
Confidence 788999999999999875543331 2 2233332 3566 8899999999754322122333333333332 11379
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++||+++ .+++++++.+...+
T Consensus 142 ~e~Sa~~~----------~~v~~lf~~~~~~~ 163 (166)
T cd01893 142 VECSAKTL----------INVSEVFYYAQKAV 163 (166)
T ss_pred EEeccccc----------cCHHHHHHHHHHHh
Confidence 99999999 99999999887643
No 133
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=1.4e-16 Score=172.94 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=112.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH-
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK- 123 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~- 123 (463)
..+|+++|++|+|||||+|+|++.....| ...|.|++.....+.+.+..+.++||||+.+|..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg----------------n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 46899999999999999999987532222 1248899888888888889999999999987642
Q ss_pred -------HHH--hh--cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 124 -------NMI--SG--ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 124 -------~~~--~~--~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
+.+ .. ...+|.+++|+|+++... ....+..+..+++| +++|+||+|+.+...++. +++++-+.
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i~i---d~~~L~~~ 140 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIP-CIVALNMLDIAEKQNIRI---DIDALSAR 140 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCC-EEEEEEchhhhhccCcHH---HHHHHHHH
Confidence 111 12 236899999999987533 23344566778999 889999999974333222 22333333
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+| +|++++||.++ .|++++.+.+....
T Consensus 141 LG-----~pVvpiSA~~g----------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 141 LG-----CPVIPLVSTRG----------RGIEALKLAIDRHQ 167 (772)
T ss_pred hC-----CCEEEEEeecC----------CCHHHHHHHHHHhh
Confidence 34 68999999999 99999999998754
No 134
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=3.3e-16 Score=139.00 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYIKN 124 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~~~ 124 (463)
+|+++|++++|||||+++|++.... .+...+.+.+.....+..++ ..+.++||||+.+|...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD----------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC----------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 7999999999999999999754111 11223444444333333333 46889999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHH-HHcC--CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQTR-EHLLLS-KQIG--IDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~-~~l~--ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....+..+|++++|+|+++....+.. ..+... ...+ +| +++++||+|+..... ...++.....+..+ +
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~--~~~~~~~~~~~~~~-----~ 137 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQ--VSTEEGEKKAKELN-----A 137 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCc--cCHHHHHHHHHHhC-----C
Confidence 88888999999999999875433322 233322 2333 66 999999999953211 11123333333332 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++++||+++ .++++++++|.+
T Consensus 138 ~~~~~Sa~~~----------~~v~~l~~~i~~ 159 (161)
T cd01861 138 MFIETSAKAG----------HNVKELFRKIAS 159 (161)
T ss_pred EEEEEeCCCC----------CCHHHHHHHHHH
Confidence 7999999999 999999999876
No 135
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.70 E-value=2.3e-16 Score=141.68 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=103.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+..+|+++|+.++|||||+++|..... ... ....|.+. ..+......+.++||||+++|..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~------------~~~---~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~ 68 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS------------VTT---IPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRP 68 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC------------ccc---cCCcccce----EEEEECCEEEEEEECCCCHHHHH
Confidence 458999999999999999999964210 000 01112222 12334667899999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH-H---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQ-MPQTREHLLLS-K---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~-~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++++|+|+++.. +....+.+... . ..++| +++|.||+|+.+... .+++.+.++.......
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~ 143 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK----PHEIQEKLGLTRIRDR 143 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCCC----HHHHHHHcCCCccCCC
Confidence 7777889999999999998743 23333333222 2 23566 999999999864211 1233443321112222
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..+++++||+++ .|+++++++|.+
T Consensus 144 ~~~~~~~SAk~g----------~gv~~~~~~l~~ 167 (168)
T cd04149 144 NWYVQPSCATSG----------DGLYEGLTWLSS 167 (168)
T ss_pred cEEEEEeeCCCC----------CChHHHHHHHhc
Confidence 357899999999 999999998854
No 136
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=3.3e-16 Score=140.49 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=104.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|++++|||||+++++...... ......|.+.......+......+.++||||+++|...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 4789999999999999999997531100 00011233333333334433457889999999998887
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQTR-EHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....+..+|++++|+|+++...-+.. .++..... -++| +++|.||+|+.++... ..++.+.+....+ .
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~--~~~~~~~~~~~~~-----~ 141 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV--SYEEGEAFAKEHG-----L 141 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC--CHHHHHHHHHHcC-----C
Confidence 77888999999999999864332222 22222333 2566 8899999999743211 1133444444433 5
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+++++||+.+ .+++++++.+...
T Consensus 142 ~~~e~Sa~~~----------~~i~~~~~~~~~~ 164 (168)
T cd01866 142 IFMETSAKTA----------SNVEEAFINTAKE 164 (168)
T ss_pred EEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 7999999999 8999998887653
No 137
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.70 E-value=2.1e-15 Score=141.75 Aligned_cols=187 Identities=20% Similarity=0.230 Sum_probs=128.1
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
....+...|+++|++|+|||||++.|.+..... ......|. +.+ +...+.+++++||||+.
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--------------~~~~~~g~-i~i----~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--------------NISDIKGP-ITV----VTGKKRRLTFIECPNDI 94 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccC--------------cccccccc-EEE----EecCCceEEEEeCCchH
Confidence 445667889999999999999999997542110 00111231 111 22357889999999964
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..++..+..+|.+++|+|+..+...++.+.+..+...++|.+++|+||+|+. +...++.+.+++++.+...-+ .
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~--~ 169 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY--Q 169 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC--C
Confidence 5667778889999999999999999999999999889999776799999998 344456666777764432212 2
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEec
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV 255 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~ 255 (463)
..|++++||++. ..-++ .....++..|...-+.+.+..+....|.++.+..+
T Consensus 170 ~~ki~~iSa~~~--~~~~~---~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 170 GAKLFYLSGIVH--GRYPK---TEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred CCcEEEEeeccC--CCCCH---HHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 368999999876 12122 33456666666644444444555556666666544
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.70 E-value=3.1e-16 Score=145.31 Aligned_cols=153 Identities=23% Similarity=0.250 Sum_probs=99.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~ 120 (463)
+.+.++|+++|++|+|||||+++|++...... ...+.|.+.....+...+ ..+.++||||+.+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAE----------------DQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccC----------------CccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 34568999999999999999999986521100 001223333223333333 3899999999732
Q ss_pred h--------HHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 121 Y--------IKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 121 f--------~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
. ...+...+..+|++++|+|++++.... ...+...+... ++| +++|+||+|+.+..... .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~~-------~ 173 (204)
T cd01878 102 DLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEELE-------E 173 (204)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHHH-------H
Confidence 1 112233456799999999999865433 22333333333 456 89999999998654322 1
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+. ....|++++||+++ .|++++++.|...
T Consensus 174 ~~~-----~~~~~~~~~Sa~~~----------~gi~~l~~~L~~~ 203 (204)
T cd01878 174 RLE-----AGRPDAVFISAKTG----------EGLDELLEAIEEL 203 (204)
T ss_pred Hhh-----cCCCceEEEEcCCC----------CCHHHHHHHHHhh
Confidence 111 12468999999999 8999999988753
No 139
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.70 E-value=3.5e-16 Score=139.86 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|..++|||||+++|++..... .. ....|.+..............+.++||||+++|....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~------------~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS------------AF--VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------------CC--CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 689999999999999999997531100 00 0011222222222222233568899999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
...++.+|++++|+|.++... .+..+.+..+... ..| +++|.||+|+.+..... .++..++.+.++ +|
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~-----~~ 139 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS--SERGRQLADQLG-----FE 139 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC--HHHHHHHHHHcC-----CE
Confidence 888899999999999976432 2233333333332 345 89999999997432111 123333334433 57
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++||+++ .|+.+|++.|...+
T Consensus 140 ~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (165)
T cd01865 140 FFEASAKEN----------INVKQVFERLVDII 162 (165)
T ss_pred EEEEECCCC----------CCHHHHHHHHHHHH
Confidence 999999999 99999999987643
No 140
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=2.6e-16 Score=140.19 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|++|+|||||+++|.+..... +..+.. + +.......+......+.++||||+++|.....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-----------~~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-----------DYDPTI---E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-----------ccCCch---h-hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 79999999999999999997542110 000000 0 00011122222345678999999999988877
Q ss_pred hhcccCCEEEEEEeCCCCCcHH-HHHHHHHH-H---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQ-TREHLLLS-K---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~q-t~e~l~~~-~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+..+|++++|+|+.+...-+ ........ . ..++| +++|.||+|+.+..... .+++..+.+..+ +|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~--~~~~~~~~~~~~-----~~ 138 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS--TEEGKELARQWG-----CP 138 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc--HHHHHHHHHHcC-----CE
Confidence 8889999999999998743211 11111111 1 12566 88999999997432111 123333444332 68
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++||+++ .+++++++.|...+
T Consensus 139 ~~~~Sa~~~----------~~i~~l~~~l~~~~ 161 (164)
T smart00173 139 FLETSAKER----------VNVDEAFYDLVREI 161 (164)
T ss_pred EEEeecCCC----------CCHHHHHHHHHHHH
Confidence 999999999 99999999987644
No 141
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.70 E-value=6.9e-16 Score=138.45 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~~ 123 (463)
++|+++|++++|||||+++|.+..... +....+..+.....+...+ ..+.++|+||++.|..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh
Confidence 479999999999999999997541110 0011112222222233333 4567999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHH--HHHHHc------CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHL--LLSKQI------GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l--~~~~~l------~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
.....++.+|++|+|+|+++....+....+ .+.... ++| +++|+||+|+.++... ..+++..+++..+
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 140 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQV--STKKAQQWCQSNG- 140 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccccc--CHHHHHHHHHHcC-
Confidence 888888999999999999875421111111 112222 567 8899999999742111 1233444455443
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.++++++|++++ .|+++++++|...
T Consensus 141 ---~~~~~~~Sa~~~----------~gv~~l~~~i~~~ 165 (172)
T cd01862 141 ---NIPYFETSAKEA----------INVEQAFETIARK 165 (172)
T ss_pred ---CceEEEEECCCC----------CCHHHHHHHHHHH
Confidence 368999999999 9999999988763
No 142
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.70 E-value=1.8e-16 Score=145.00 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=103.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
...+|+++|+.|+|||||+++|.+.... . . ..|.......+..++..+.++|+||+.+|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-------------~--~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~ 78 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-------------Q--H----VPTLHPTSEELTIGNIKFKTFDLGGHEQARR 78 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-------------c--c----CCccCcceEEEEECCEEEEEEECCCCHHHHH
Confidence 4688999999999999999999753110 0 0 0111112233445677899999999999987
Q ss_pred HHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC---
Q psy3124 124 NMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY--- 195 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~--- 195 (463)
.....+..+|++++|+|+.+.. +....+.+.... ..+.| +++++||+|+...... +++++.+.....
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~ 153 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGAVSE----EELRQALGLYGTTTG 153 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCCcCH----HHHHHHhCccccccc
Confidence 7777889999999999998642 122223332222 24567 8899999999742222 233444432111
Q ss_pred --------CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 196 --------DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 196 --------~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
....++++++||+++ .|+++++++|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~----------~gv~e~~~~l~~~ 189 (190)
T cd00879 154 KGVSLKVSGIRPIEVFMCSVVKR----------QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccCceeEEEEEeEecCC----------CChHHHHHHHHhh
Confidence 112357899999999 9999999998763
No 143
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=4.4e-16 Score=139.48 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=102.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
+...+|+++|+.|+|||||+++|+......+ ....++.+.....+...+ ..+.++|+||+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG----------------QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCC----------------CCCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 4568999999999999999999975311111 111222233333333444 4577899999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHH---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSK---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|.......+..+|++++|+|+.++...+. ...+..++ ..++| +++|.||+|+.+.... ..++...+...
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i---~~~~~~~~~~~--- 141 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREV---SQQRAEEFSDA--- 141 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccc---CHHHHHHHHHH---
Confidence 99888888999999999999987543222 22222222 23566 7789999999743211 11222222221
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...+++++||+++ .+++++++.|..
T Consensus 142 -~~~~~~~~Sa~~~----------~gv~~l~~~i~~ 166 (169)
T cd04114 142 -QDMYYLETSAKES----------DNVEKLFLDLAC 166 (169)
T ss_pred -cCCeEEEeeCCCC----------CCHHHHHHHHHH
Confidence 1267999999999 999999998875
No 144
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=4.1e-16 Score=139.36 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|..|+|||||+++|....... ......+.+.......+......+.++||||+++|...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE--------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 67 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 4689999999999999999997431100 00001122222222333333456889999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....++.+|++++|+|+++... ....+.+..... .++| +++|.||+|+....... .++...+.+.. .+
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~-----~~ 139 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVD--YSEAQEFADEL-----GI 139 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCC--HHHHHHHHHHc-----CC
Confidence 7788899999999999987432 222333333333 2466 88999999986432111 12333344333 36
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .++.++++.|...
T Consensus 140 ~~~~~Sa~~~----------~~v~~~~~~i~~~ 162 (166)
T cd01869 140 PFLETSAKNA----------TNVEQAFMTMARE 162 (166)
T ss_pred eEEEEECCCC----------cCHHHHHHHHHHH
Confidence 8999999999 9999999988653
No 145
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.69 E-value=1.3e-16 Score=125.30 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=76.9
Q ss_pred CceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCccc
Q psy3124 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIER 323 (463)
Q Consensus 244 p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 323 (463)
||+|+|+++|+.. |++++|+|.+|++++||++.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK--TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC--cEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7999999999864 8999999999999999999999986 46899999999999999999999999999999999999
Q ss_pred ceEEec
Q psy3124 324 GMLLAK 329 (463)
Q Consensus 324 G~vl~~ 329 (463)
||+|++
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999984
No 146
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.69 E-value=4.3e-16 Score=138.58 Aligned_cols=153 Identities=19% Similarity=0.157 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|..++|||||+.+|.... + .... ...|..+ ..+......+.++||||+++|...+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~-------~-----~~~~---pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGE-------I-----VTTI---PTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-------C-----cccC---CCCCcce----EEEEECCEEEEEEECCCCHhHHHHH
Confidence 379999999999999999995320 0 0000 0112211 1233456789999999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...++.+|++++|+|+++.. +.+..+.+..+.. ...| ++++.||+|+.+....+ ++.+.+.........+
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMSAA----EVTDKLGLHSLRNRNW 136 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCCHH----HHHHHhCccccCCCCE
Confidence 88889999999999998642 2333333332221 2455 89999999996421111 2222221111222345
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++++||+++ .|+++++++|.+
T Consensus 137 ~~~~~Sak~g----------~gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSG----------DGLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCC----------CCHHHHHHHHhc
Confidence 6789999999 999999998854
No 147
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=4.6e-16 Score=138.70 Aligned_cols=154 Identities=21% Similarity=0.191 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
++|+++|++++|||||+++|++.... .+....+..+. ....+......+.++||||+++|..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV----------------SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH
Confidence 47999999999999999999754111 11111222222 2233333456788999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHHH--------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTR-EHLLLSKQ--------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~~--------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
.....+..+|++|+|+|+++...-+.. +.+..+.. .+.| +++|.||+|+.++... ..++.+.+....+
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 141 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV--SEDEGRLWAESKG 141 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc--CHHHHHHHHHHcC
Confidence 777788899999999999874322222 22222221 2345 8999999999732111 1123333333332
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .++.++++.|.+.
T Consensus 142 -----~~~~~~Sa~~~----------~gi~~l~~~l~~~ 165 (168)
T cd04119 142 -----FKYFETSACTG----------EGVNEMFQTLFSS 165 (168)
T ss_pred -----CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 67999999999 9999999998753
No 148
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=4.7e-16 Score=139.32 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|.+++|||||++++++...... .....+.+.......+......+.++||||+++|...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--------------FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--------------cccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 57999999999999999999975411100 0011122222222333333356889999999998887
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....+..+|++++|+|++++..-+ ..+.+..... .++| +++|.||+|+.+.... ..++..+..+..+ .
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-----~ 140 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV--SKEEGEALADEYG-----I 140 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC--CHHHHHHHHHHcC-----C
Confidence 777889999999999998744322 2222222222 3566 8899999999743211 1123444444433 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .++.++++.|...
T Consensus 141 ~~~~~Sa~~~----------~~v~~~~~~i~~~ 163 (167)
T cd01867 141 KFLETSAKAN----------INVEEAFFTLAKD 163 (167)
T ss_pred EEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 8999999999 8999999888763
No 149
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=4.9e-16 Score=160.74 Aligned_cols=152 Identities=22% Similarity=0.200 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh----h
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD----Y 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~----f 121 (463)
.+|+++|++|+|||||+++|++.... ......|+|.+.......+.+..+.++||||+.+ +
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---------------~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---------------IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---------------eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 47999999999999999999754110 0111236666666666777788999999999987 3
Q ss_pred ----HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 ----IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ----~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
......++..+|++++|+|+.++......+....++..+.| +++|+||+|+.+.+ ..+.++ ..+++.
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~------~~~~~~-~~lg~~- 137 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEE------ADAYEF-YSLGLG- 137 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccch------hhHHHH-HhcCCC-
Confidence 23345567889999999999998887777777788888888 88999999976421 112222 233432
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++++||.++ .++.++++.+....
T Consensus 138 ---~~~~iSa~~g----------~gv~~l~~~I~~~~ 161 (435)
T PRK00093 138 ---EPYPISAEHG----------RGIGDLLDAILEEL 161 (435)
T ss_pred ---CCEEEEeeCC----------CCHHHHHHHHHhhC
Confidence 3689999999 89999999998743
No 150
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=3.6e-16 Score=138.57 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|.+|+|||||+++|++..... .... ..+.+. .....+......+.++||||+++|...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~---------~~~~-----t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD---------EYDP-----TIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC---------CcCC-----cchheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 579999999999999999997531100 0000 001111 1112222233457789999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQT-REHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|..+....+. ...+.... ..++| +++|.||+|+.+... ..+++.++.+..+ +
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~---~~~~~~~~~~~~~-----~ 137 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTV---SSRQGQDLAKSYG-----I 137 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccee---cHHHHHHHHHHhC-----C
Confidence 888899999999999886432111 11222222 23567 889999999974221 1223344444433 5
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
|++++||+++ .|++++++.|.+
T Consensus 138 ~~~~~Sa~~~----------~gi~~l~~~l~~ 159 (162)
T cd04138 138 PYIETSAKTR----------QGVEEAFYTLVR 159 (162)
T ss_pred eEEEecCCCC----------CCHHHHHHHHHH
Confidence 7999999999 999999998875
No 151
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=8.8e-16 Score=134.20 Aligned_cols=167 Identities=22% Similarity=0.185 Sum_probs=119.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHADY 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~f 121 (463)
....+|+++|+.++||||++++++....-.-.... ..+..+ ..|..|+.+.+...+..+ ..+.|+|||||++|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~----~~~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADA----SSVSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccc----cccccc--cccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 45678999999999999999999755321000000 000000 134467776666666555 78999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG-IDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~-ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
-..+.-..+.+++++++||++.+.....++.+....... +| ++|++||.|+.+...-+ +++++++... ..+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~ppe----~i~e~l~~~~---~~~ 153 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALPPE----KIREALKLEL---LSV 153 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCCHH----HHHHHHHhcc---CCC
Confidence 999988899999999999999977665567777788888 66 89999999998543322 3444554332 358
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++..+|..+ ++..+.++.|...
T Consensus 154 ~vi~~~a~e~----------~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEG----------EGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccc----------hhHHHHHHHHHhh
Confidence 9999999987 7777777776653
No 152
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=3.9e-16 Score=138.64 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|++++|||||+++|+..... ...+...+.+.......+......+.++||||+++|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD--------------PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--------------cccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 47999999999999999999753110 0111222333333333343334678899999999998777
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTR-EHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...++.+|++++|+|+++....+.. .++..+. ..++| +++|.||+|+...... .++..++.+.. .+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~---~~~~~~~~~~~-----~~ 137 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT---REEGLKFARKH-----NM 137 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC---HHHHHHHHHHc-----CC
Confidence 7778899999999999874432222 2222222 23566 7899999999732211 12333444433 36
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
|++++||+++ .|++++++.+..
T Consensus 138 ~~~~~Sa~~~----------~gi~~~~~~~~~ 159 (161)
T cd01863 138 LFIETSAKTR----------DGVQQAFEELVE 159 (161)
T ss_pred EEEEEecCCC----------CCHHHHHHHHHH
Confidence 8999999999 999999998765
No 153
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=5.7e-16 Score=142.10 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEecCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
.+|+++|..++|||||++++.......+ +....+..+.. ...+......+.|+||||+++|..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG---------------NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---------------CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 3799999999999999999965311100 00111112221 222333345788999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.....+..+|++|+|+|++..... .....+..+..+ ++| +++|+||+|+..+... ..++...+.+.++
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~----- 137 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVV--KREDGERLAKEYG----- 137 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhcccc--CHHHHHHHHHHcC-----
Confidence 777788899999999999874322 223333333332 566 8899999999632111 1123334444433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+|++++||+++ .++++++++|...+.
T Consensus 138 ~~~~e~Sa~~~----------~~v~~l~~~l~~~~~ 163 (191)
T cd04112 138 VPFMETSAKTG----------LNVELAFTAVAKELK 163 (191)
T ss_pred CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 68999999999 999999999987554
No 154
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=5.8e-16 Score=143.25 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEe-cCCeeEEEEeCCChhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYS-TNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~-~~~~~i~liDtPGh~~f~ 122 (463)
++|+++|..++|||||+++|.+.... .+....+..+. ....+. .....+.++||||+++|.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS----------------QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh
Confidence 47999999999999999999753110 00011122222 223333 334568899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHH-------HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSK-------QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~-------~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
..+...+..+|++|+|+|.++...-+. .+.+..+. ..++| +++|.||+|+.+... ...+++.++.+..+
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~--~~~~~~~~~~~~~~ 141 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLA--KDGEQMDQFCKENG 141 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccc--cCHHHHHHHHHHcC
Confidence 877888899999999999987432221 11222111 13567 889999999973211 11234555665554
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+ .+++++||+++ .++++++++|...+
T Consensus 142 ~----~~~~e~Sak~~----------~~v~e~f~~l~~~l 167 (201)
T cd04107 142 F----IGWFETSAKEG----------INIEEAMRFLVKNI 167 (201)
T ss_pred C----ceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 3 57999999999 89999999887754
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.69 E-value=4.4e-16 Score=141.86 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=101.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEE-ecCCeeEEEEeCCChhhhHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY-STNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-~~~~~~i~liDtPGh~~f~~ 123 (463)
..+|+++|+.|+|||||++++..... ... ....|.+........ ...+..+.++||||+++|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~------------~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF------------VNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc------------CCc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 57899999999999999999964310 000 011122222111111 22456799999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHH----HHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC-C
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTR----EHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD-G 197 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~----e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~-~ 197 (463)
.+...+..+|++++|+|+++... .... +.+......++| +++|+||+|+...... +++..++...... .
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~~----~~~~~~~~~~~~~~~ 142 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALSV----SEVEKLLALHELSAS 142 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCCH----HHHHHHhCccccCCC
Confidence 77777889999999999987432 1111 122223345677 8899999998632111 1222222211111 1
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..++++++||+++ .|++++++.|...+
T Consensus 143 ~~~~~~~~SA~~~----------~gi~~l~~~l~~~l 169 (183)
T cd04152 143 TPWHVQPACAIIG----------EGLQEGLEKLYEMI 169 (183)
T ss_pred CceEEEEeecccC----------CCHHHHHHHHHHHH
Confidence 2367899999999 99999999887644
No 156
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=7.5e-16 Score=135.10 Aligned_cols=154 Identities=21% Similarity=0.141 Sum_probs=105.8
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhhhH------
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHADYI------ 122 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~f~------ 122 (463)
++|++|+|||||+++|++..... .....+.|.......+... ...+.++||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999997642111 1112234444433333333 6789999999987653
Q ss_pred -HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 123 -KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 123 -~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+...+..+|++++|+|+..................++| +++|+||+|+..........+.... . .......|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~~~~ 140 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLELRLL-I---LLLLLGLP 140 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHHHHHh-h---cccccCCc
Confidence 3444567889999999999998776666556666677888 8899999999865443332210111 1 12224589
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++||.++ .++++++++|...
T Consensus 141 ~~~~sa~~~----------~~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTG----------EGIDELREALIEA 162 (163)
T ss_pred eEEEeeecc----------CCHHHHHHHHHhh
Confidence 999999998 8999999988763
No 157
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.68 E-value=1e-15 Score=138.65 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=102.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEe----------cCCeeEE
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYS----------TNTRHYA 111 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~----------~~~~~i~ 111 (463)
..++|+++|..++|||||++++...... .+....+..+.. ...+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN----------------PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC----------------ccCCCccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 3589999999999999999999653111 001111222221 12221 1235688
Q ss_pred EEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEEeccCcccHHHHHHHHHHH
Q psy3124 112 HTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI----GIDNVVVYVNKADLVDREIMELVELEV 186 (463)
Q Consensus 112 liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l----~ip~iivvvNKiD~~~~~~~~~i~~~i 186 (463)
|+||||+++|.......++.+|++++|+|+++...-+ ....+...... +.| +++|.||+|+.+..... .+++
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~--~~~~ 143 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS--EEQA 143 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC--HHHH
Confidence 9999999999888888889999999999998733212 12222223221 445 89999999997432111 1334
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.++.+.++ +|++++||+++ .+++++++.|.+
T Consensus 144 ~~~~~~~~-----~~~~e~Sak~~----------~~v~~l~~~l~~ 174 (180)
T cd04127 144 KALADKYG-----IPYFETSAATG----------TNVEKAVERLLD 174 (180)
T ss_pred HHHHHHcC-----CeEEEEeCCCC----------CCHHHHHHHHHH
Confidence 44554443 68999999999 899999998865
No 158
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=6.6e-16 Score=137.27 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|.+|+|||||++++....... ..+... + ........+......+.|+||||+++|....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---------~~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE---------KYDPTI-----E-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---------ccCCch-----h-hhEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 589999999999999999997431100 000000 0 0011112223333567789999999998777
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...++.+|++++|+|.++... ....+.+..+.. .++| +++|.||+|+.+..... .++...+.+.++ +
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~-----~ 138 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVS--REEGQALARQWG-----C 138 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceec--HHHHHHHHHHcC-----C
Confidence 777889999999999986432 222222222222 2567 88999999997432111 122233333332 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .++.++++.|...
T Consensus 139 ~~~~~Sa~~~----------~~v~~l~~~l~~~ 161 (163)
T cd04136 139 PFYETSAKSK----------INVDEVFADLVRQ 161 (163)
T ss_pred eEEEecCCCC----------CCHHHHHHHHHHh
Confidence 8999999999 9999999988763
No 159
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=7.1e-16 Score=140.23 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
...+|+++|..++|||||+.+|.... + .. .....|.. ...++..+..+.++|+||+++|..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~-------~-----~~---~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGE-------I-----VT---TIPTIGFN----VETVEYKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC-------C-----cc---ccCCccee----EEEEEECCEEEEEEECCCCHHHHH
Confidence 35799999999999999999996320 0 00 01111222 223455678899999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++|+|+|+++... ....+.+.... ..++| ++++.||+|+.+.... +++.+.+.-..+...
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~l~l~~~~~~ 151 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA----AEITDKLGLHSLRQR 151 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCCH----HHHHHHhCccccCCC
Confidence 88888899999999999987432 22222222221 12556 8899999998743222 233333321112222
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+.++++||+++ .|+.+++++|...+
T Consensus 152 ~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 152 HWYIQSTCATSG----------EGLYEGLDWLSNNI 177 (181)
T ss_pred ceEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 345678999999 99999999987643
No 160
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=2.8e-16 Score=136.79 Aligned_cols=136 Identities=26% Similarity=0.273 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh----hhH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA----DYI 122 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~----~f~ 122 (463)
+|+++|++++|||||+++|++... . ...|+. ..+ .. .++||||.. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-------------~-------~~~t~~---~~~--~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-------------L-------YKKTQA---VEY--ND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-------------c-------ccccee---EEE--cC---eeecCchhhhhhHHHH
Confidence 799999999999999999975310 0 011221 112 11 689999973 445
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
..+...++.+|++++|+|++++...+..+.+. ..+.| +++|+||+|+.+... ..+++.++++..+. .|+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~~~p-~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~~----~~~ 122 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFAS---IFVKP-VIGLVTKIDLAEADV---DIERAKELLETAGA----EPI 122 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHH---hccCC-eEEEEEeeccCCccc---CHHHHHHHHHHcCC----CcE
Confidence 55555678999999999998877544433322 23446 888999999974221 12334444554442 479
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
+++||+++ .++++++++|.
T Consensus 123 ~~~Sa~~~----------~gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDE----------QGLEALVDYLN 141 (142)
T ss_pred EEEecCCC----------CCHHHHHHHHh
Confidence 99999999 99999998874
No 161
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.68 E-value=9.3e-16 Score=136.86 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=101.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|.+++|||||+++|.+..... ......+.+.......+......+.++|+||++.|...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 3689999999999999999997531110 00011122222222333323346889999999998887
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....+..+|++++|+|+.+....+. .+.+..+.. .++| +++|.||+|+...... ..++...+.... .+
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~--~~~~~~~~~~~~-----~~ 140 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV--PTEEAKAFAEKN-----GL 140 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC--CHHHHHHHHHHc-----CC
Confidence 7778889999999999986332222 222222222 2456 8899999998743211 122333443332 36
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+++++||+++ .+++++++.|...
T Consensus 141 ~~~~~Sa~~~----------~~v~~l~~~l~~~ 163 (165)
T cd01868 141 SFIETSALDG----------TNVEEAFKQLLTE 163 (165)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHH
Confidence 8999999999 9999999998763
No 162
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.68 E-value=1e-15 Score=136.97 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|+.++|||||+++|...... .. .....|.+.......+......+.++||||+++|...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~------------~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFM------------AD--CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC------------CC--CCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 368999999999999999999643110 00 0001122222222233333456789999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....++.+|++|+|+|+++...-+ ..+.+...... +.| +++|.||+|+..+... ..+++.++.+.. .+
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~--~~~~~~~~~~~~-----~~ 139 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDV--TYEEAKQFADEN-----GL 139 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCc--CHHHHHHHHHHc-----CC
Confidence 888889999999999998744322 22333323222 345 8899999999743211 123344444443 36
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++.+||+++ .|+.++++.+..
T Consensus 140 ~~~e~Sa~~~----------~~i~e~f~~l~~ 161 (166)
T cd04122 140 LFLECSAKTG----------ENVEDAFLETAK 161 (166)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHH
Confidence 8999999999 899998877764
No 163
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.68 E-value=1.6e-15 Score=136.12 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEecCCeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPGh~~f 121 (463)
...+|+++|.+++|||||++++...... .+....++.+.. ...+......+.|+||||+++|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC----------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 4689999999999999999999643111 011112222222 2233333456778999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHH-H------HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTR-EHLLLS-K------QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~-~------~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
.......++.+|++++|.|.++....+.. +..... . ..++| +++|.||+|+.... ...+++.++.+..
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---~~~~~~~~~~~~~ 143 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQ---VSTEEAQAWCREN 143 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccccc---cCHHHHHHHHHHC
Confidence 88888888999999999998875422211 111111 1 13467 88999999986221 1123455555554
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+ ..+++++||+++ .++.++++.+.+
T Consensus 144 ~----~~~~~e~Sa~~~----------~~v~~~~~~~~~ 168 (170)
T cd04116 144 G----DYPYFETSAKDA----------TNVAAAFEEAVR 168 (170)
T ss_pred C----CCeEEEEECCCC----------CCHHHHHHHHHh
Confidence 4 257999999999 899999988865
No 164
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.68 E-value=9.2e-16 Score=138.70 Aligned_cols=156 Identities=18% Similarity=0.126 Sum_probs=103.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
...+|+++|..++|||||+.+|.... + .+. . .|+......+......+.++||||+.+|..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~-------~-----~~~-----~--~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGE-------S-----VTT-----I--PTIGFNVETVTYKNISFTVWDVGGQDKIRP 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-------C-----CCc-----C--CccccceEEEEECCEEEEEEECCCChhhHH
Confidence 35899999999999999999995320 0 000 0 111111123344677899999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++|+|+|+++.. .....+.+..+.. .++| ++||.||+|+.+....+ ++.+.+........
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~i~~~~~~~~~~~~ 147 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMKAA----EITEKLGLHSIRDR 147 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCCHH----HHHHHhCccccCCC
Confidence 8888889999999999998643 3344444443321 2456 89999999996432112 22222211111122
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+.++++||+++ .|+++++++|...
T Consensus 148 ~~~~~~~Sa~~g----------~gv~e~~~~l~~~ 172 (175)
T smart00177 148 NWYIQPTCATSG----------DGLYEGLTWLSNN 172 (175)
T ss_pred cEEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 345778999999 9999999998764
No 165
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=4.8e-16 Score=139.68 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|..++|||||+++|.+... .. ...|+......++..+..+.++||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~------------~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF------------MQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC------------CC-------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 589999999999999999975310 00 01122122223455678899999999999988887
Q ss_pred hhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC-CCCCC
Q psy3124 127 SGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY-DGDNT 200 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~-~~~~~ 200 (463)
..+..+|++++|+|+++.. +....+.+..... .+.| +++|.||+|+.+.... +++.+.+...++ ....+
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALSV----EEMTELLSLHKLCCGRSW 136 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccCCCH----HHHHHHhCCccccCCCcE
Confidence 8889999999999998742 2223333332221 2355 8999999999643221 223333322111 11235
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+++++||+++ .|+++++++|.+.++
T Consensus 137 ~~~~~Sa~~g----------~gv~~~f~~l~~~~~ 161 (169)
T cd04158 137 YIQGCDARSG----------MGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEeCcCCCC----------CCHHHHHHHHHHHHh
Confidence 7889999999 999999999987543
No 166
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=1.2e-15 Score=136.38 Aligned_cols=154 Identities=19% Similarity=0.131 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|..|+|||||++++++...... .... .+.+. .....+......+.++||||+++|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--------~~~t------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--------YIPT------IEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--------cCCc------chheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 5799999999999999999975411100 0000 00011 1112233344568899999999998777
Q ss_pred HhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
...+..+|++++|.|.++.... .....+..... .++| +++|.||+|+....... .++........
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~----- 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVS--SNEGAACATEW----- 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeec--HHHHHHHHHHh-----
Confidence 7778899999999999875432 22333333332 3567 88999999996421111 11222222222
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.++++++||+++ .+++++++.|.+
T Consensus 139 ~~~~~e~SA~~g----------~~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTN----------HNVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCC----------CCHHHHHHHHHh
Confidence 367999999999 999999999875
No 167
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=1.9e-15 Score=164.66 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=119.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh---
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD--- 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~--- 120 (463)
...+|+++|++++|||||+++|++... ...+...|+|.+......++.+..+.++||||...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~---------------~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE---------------AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc---------------eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc
Confidence 467899999999999999999985310 11122358888877777888889999999999653
Q ss_pred -----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 121 -----YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 121 -----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
+...+..++..+|++|+|+|++++......+.+..++..+.| +++|+||+|+..... ...++ ...++
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~~~~~~------~~~~~-~~lg~ 410 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDDQASEY------DAAEF-WKLGL 410 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccccchh------hHHHH-HHcCC
Confidence 455666778899999999999999888777777888888988 889999999864211 11122 22343
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
. ..+++||+++ .|+.+|++.|...++.
T Consensus 411 ~----~~~~iSA~~g----------~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 411 G----EPYPISAMHG----------RGVGDLLDEALDSLKV 437 (712)
T ss_pred C----CeEEEECCCC----------CCchHHHHHHHHhccc
Confidence 2 2468999999 9999999999887654
No 168
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=5.3e-16 Score=139.58 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=102.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|+.|+|||||+++|.+.... ......|.+. ..+...+..+.++|+||+.+|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~---------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS---------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHHH
Confidence 34789999999999999999999764110 0001123222 2333457789999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHH----HHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQ-MPQTREHLLL----SKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~----~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+.+.. .......+.. ....++| +++++||+|+.+....+++. +.+....+..
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~i~----~~l~~~~~~~ 147 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAPAEEIA----EALNLHDLRD 147 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCCHHHHH----HHcCCcccCC
Confidence 77777788999999999998632 1222222222 2234677 88999999997533222222 2221111222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...+++++||+++ .|+++++++|.+
T Consensus 148 ~~~~~~~~Sa~~~----------~gi~~~~~~l~~ 172 (173)
T cd04155 148 RTWHIQACSAKTG----------EGLQEGMNWVCK 172 (173)
T ss_pred CeEEEEEeECCCC----------CCHHHHHHHHhc
Confidence 2356889999999 999999999864
No 169
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=3.7e-16 Score=161.14 Aligned_cols=149 Identities=21% Similarity=0.167 Sum_probs=108.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH-
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI- 122 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~- 122 (463)
...+|+++|++|+|||||+++|++... .......|.|.+.....+..++..+.++||||+.++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~---------------a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER---------------AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 347899999999999999999976311 0111234667776666677788899999999987642
Q ss_pred -------HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 123 -------KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 123 -------~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..+...+..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+..... .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~~----------~---- 341 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDLE----------E---- 341 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchhh----------h----
Confidence 223456788999999999988765554444433 34666 88999999997532211 1
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
....+++++||+++ .|+++|++.|...++
T Consensus 342 -~~~~~~i~iSAktg----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 342 -ENGKPVIRISAKTG----------EGIDELREAIKELAF 370 (449)
T ss_pred -ccCCceEEEEeeCC----------CCHHHHHHHHHHHHh
Confidence 12367899999999 999999999988654
No 170
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=1.3e-15 Score=138.90 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=102.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
...+|+++|..|+|||||+++|.+.... . .....+.++ ..+...+..+.++|+||+.++..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~------------~---~~~t~~~~~----~~~~~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA------------Q---HQPTQHPTS----EELAIGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc------------c---cCCccccce----EEEEECCEEEEEEECCCCHHHHH
Confidence 4588999999999999999999753110 0 000112222 22334567899999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC---
Q psy3124 124 NMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY--- 195 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~--- 195 (463)
.+...+..+|++++|+|+++.. .....+.+..+. ..++| +++|+||+|+......+ ++++.+.-...
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~~----~i~~~l~l~~~~~~ 151 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAASED----ELRYALGLTNTTGS 151 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCCCHH----HHHHHcCCCccccc
Confidence 8888889999999999998743 223333333222 24677 89999999986321122 22222211110
Q ss_pred ----CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 196 ----DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 196 ----~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
......++++||+++ .|+++++++|..
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~----------~g~~~~~~wl~~ 182 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRR----------MGYGEGFKWLSQ 182 (184)
T ss_pred ccccCCceeEEEEeecccC----------CChHHHHHHHHh
Confidence 112345899999999 999999999865
No 171
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.67 E-value=1.3e-15 Score=137.02 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
+|+++|..++|||||++++...... .+....+..+. ....+......+.++||||+++|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD----------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 6899999999999999999753110 01111122222 22223333457889999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcC---CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQIG---IDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~---ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....++.+|++++|+|+++... ....+++....... -+++++|.||+|+.+........++...+.+.++ .
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-----~ 140 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-----A 140 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-----C
Confidence 8888899999999999976322 22223333332221 2348899999999754332222334444444433 5
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++.+||+++ .+++++++.|...+
T Consensus 141 ~~~e~Sa~~g----------~~v~~lf~~l~~~~ 164 (170)
T cd04108 141 EYWSVSALSG----------ENVREFFFRVAALT 164 (170)
T ss_pred eEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 7899999999 99999998887643
No 172
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=3.4e-15 Score=132.75 Aligned_cols=155 Identities=22% Similarity=0.326 Sum_probs=106.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh-------
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD------- 120 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~------- 120 (463)
|+++|+.|+|||||++.|++.... .+.+...+.|........ + ..+.++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL--------------ARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce--------------eeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHH
Confidence 799999999999999999842100 001112234444333222 2 2899999999643
Q ss_pred ---hHHH---HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 121 ---YIKN---MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 121 ---f~~~---~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
+... .......++++++|+|+.........+.+..+...+.| +++++||+|+.+..........+...++...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~ 143 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAKALKEIKKELKLFE 143 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence 2222 22333457889999999887777777777888888888 8899999999866555555556666555311
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
...|++++||+++ .++.++++.|..+
T Consensus 144 ---~~~~~~~~Sa~~~----------~~~~~l~~~l~~~ 169 (170)
T cd01876 144 ---IDPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred ---CCCceEEEecCCC----------CCHHHHHHHHHHh
Confidence 2478999999999 8999999998764
No 173
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=1e-15 Score=140.12 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=102.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+..+|+++|+.++|||||+.++.+..... ..+. ..+.+. .....+......+.++||||+++|..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~---------~~~~-----t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID---------EYDP-----TIEDSY-RKQCVIDEETCLLDILDTAGQEEYSA 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc---------CcCC-----chhhEE-EEEEEECCEEEEEEEEeCCCCccchh
Confidence 45899999999999999999997531100 0000 001111 11122333345678999999999998
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.....+..+|++++|+|+++... ....+.+..... -++| +++|.||+|+.+..... .++...+.+.++
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~--~~~~~~~~~~~~---- 141 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVS--TGEGQELAKSFG---- 141 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC--HHHHHHHHHHhC----
Confidence 88888899999999999987542 222222222222 2567 88999999986432111 122333333332
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.|++.+||+++ .|+++++++|...+
T Consensus 142 -~~~~e~Sak~~----------~gi~~~~~~l~~~l 166 (189)
T PTZ00369 142 -IPFLETSAKQR----------VNVDEAFYELVREI 166 (189)
T ss_pred -CEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 89999998887654
No 174
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=1.6e-15 Score=140.09 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=104.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|+.|+|||||+++|.+.... + ......|.........+......+.|+||||++.|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~------------~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS------------G--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC------------C--CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 3689999999999999999999643110 0 0001112222222222222335688999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
.....+..+|++++|+|+++...-+ ..+.+..... -.+| ++||.||+|+.+.... ..++...+.+..+ +
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~--~~~~~~~~~~~~~-----~ 142 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVV--ETEDAYKFAGQMG-----I 142 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccccccc--CHHHHHHHHHHcC-----C
Confidence 8888889999999999998754322 2233333322 2355 8899999999743211 1233444444433 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++++||+++ .++.+++++|...+
T Consensus 143 ~~~e~Sa~~~----------~gi~~lf~~l~~~~ 166 (199)
T cd04110 143 SLFETSAKEN----------INVEEMFNCITELV 166 (199)
T ss_pred EEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 7999999999 89999999987744
No 175
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.67 E-value=8.1e-16 Score=136.45 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|.+|+|||||+++|.+.... .. ....+.+. ....+ .....+.++||||+..|...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~------------~~---~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV------------TT---IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc------------cc---cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHH
Confidence 4899999999999999999754110 00 00112222 11222 1346799999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCCc-HHHHHHHHHH-H---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC-CCCC
Q psy3124 127 SGASQMDGAIVVVAASEGQM-PQTREHLLLS-K---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD-GDNT 200 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~-~qt~e~l~~~-~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~-~~~~ 200 (463)
..+..+|++++|+|+.+... ......+... . ..++| +++|+||+|+.+....+ ++...+....+. ...+
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALTAE----EITRRFKLKKYCSDRDW 137 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcCHH----HHHHHcCCcccCCCCcE
Confidence 88899999999999987541 2222222221 1 14677 89999999996422122 222222111111 1246
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++++||+++ .|++++++.|.+
T Consensus 138 ~~~~~Sa~~~----------~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTG----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccC----------CChHHHHHHHhc
Confidence 7999999999 999999998854
No 176
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=7.7e-16 Score=135.49 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=100.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHh
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMIS 127 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~ 127 (463)
|+++|+.|+|||||+++|++.... .+....+..+. ..+......+.++|+||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS----------------EDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC----------------cCccCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999754110 00111111221 223344578999999999999988888
Q ss_pred hcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 128 GASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
.+..+|++++|+|+++.. ..+..+.+..+.. .++| +++|+||+|+.+....+.+. +.+.........+++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~ 138 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSVDELI----EQMNLKSITDREVSC 138 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcCHHHHH----HHhCcccccCCceEE
Confidence 899999999999998642 2333344433322 4667 88999999987543222211 111100112234789
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++|++++ .++++++++|..
T Consensus 139 ~~~Sa~~~----------~gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEK----------TNIDIVLDWLIK 158 (159)
T ss_pred EEEEeccC----------CChHHHHHHHhh
Confidence 99999999 999999998864
No 177
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=1.1e-15 Score=136.30 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|.+|+|||||++++...... +... ..-+.+.. ....+......+.++||||+++|....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~------------~~~~--~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV------------EKYD--PTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC------------cccC--CcchheEE-EEEEECCEEEEEEEEECCCcccchhHH
Confidence 57999999999999999998642110 0000 00011111 112222234567799999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|.++... ....+.+.... ..++| +++|.||+|+.+..... .++..++.+..+ +
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~-----~ 138 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG--KEQGQNLARQWG-----C 138 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc--HHHHHHHHHHhC-----C
Confidence 888899999999999876432 22222222222 23577 89999999997432111 112233333332 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .++++++++|.+.
T Consensus 139 ~~~~~Sa~~~----------~~v~~~~~~l~~~ 161 (164)
T cd04175 139 AFLETSAKAK----------INVNEIFYDLVRQ 161 (164)
T ss_pred EEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 8999999999 9999999998763
No 178
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=2e-15 Score=140.80 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=104.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+..++|+++|+.++|||||+++|+..... ......|.+.......+......+.|+||||+++|.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 76 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE---------------DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR 76 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 34689999999999999999999754110 001111222222333333334578899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHH-HHHH-HHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTR-EHLL-LSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~-e~l~-~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
......++.+|++|+|+|+.+....+.. +.+. ... ..++| +++|.||+|+....... .++...+....+
T Consensus 77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~--~~~~~~~~~~~~-- 151 (211)
T PLN03118 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVS--REEGMALAKEHG-- 151 (211)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccC--HHHHHHHHHHcC--
Confidence 8888888999999999999874332222 2221 122 13456 78899999997432211 122333333332
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 152 ---~~~~e~SAk~~----------~~v~~l~~~l~~~~ 176 (211)
T PLN03118 152 ---CLFLECSAKTR----------ENVEQCFEELALKI 176 (211)
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 99999999998754
No 179
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.66 E-value=8.2e-16 Score=123.12 Aligned_cols=88 Identities=40% Similarity=0.718 Sum_probs=81.2
Q ss_pred cceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeC
Q psy3124 336 HNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIREN 415 (463)
Q Consensus 336 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~ 415 (463)
++.|+|++.+|++.++++++||+.||.+++|+++.++.|++....+ ++.+++||.+.|+|+|.+|+++++++||+||++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~~-~~~i~~g~~~~v~l~l~~pv~~~~~~rf~lR~~ 81 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEG-TEMVMPGDNVKMTVELIHPIALEKGLRFAIREG 81 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccCc-ccccCCCCEEEEEEEECCcEEEecCCEEEEecC
Confidence 6899999999998766667899999999999999999999998754 378999999999999999999999999999999
Q ss_pred CceEEEEEE
Q psy3124 416 NKLVATGIV 424 (463)
Q Consensus 416 ~~tig~G~V 424 (463)
++|+|+|+|
T Consensus 82 ~~tig~G~V 90 (90)
T cd03707 82 GRTVGAGVI 90 (90)
T ss_pred CcEEEEEEC
Confidence 999999986
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=2.8e-15 Score=134.70 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--CeeEEEEeCCChhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--TRHYAHTDCPGHADYI 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPGh~~f~ 122 (463)
..+|+++|+.|+|||||+++++... .+.+....+..+.....+... ...+.++||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR----------------FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC----------------CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 4789999999999999999996431 011111222233322233333 3678899999999987
Q ss_pred HH-HHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 KN-MISGASQMDGAIVVVAASEGQMPQTR-EHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ~~-~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.. ....+..+|++++|+|+++....+.. ..+..+.. -++| +++|.||+|+....... .++..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~--- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVP--TDLAQRFADAH--- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCC--HHHHHHHHHHc---
Confidence 54 44557889999999999876543333 33333333 2467 88999999986432111 12223333332
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.++++.+||+++. ...++.+++..|...
T Consensus 140 --~~~~~e~Sa~~~~-------~~~~i~~~f~~l~~~ 167 (170)
T cd04115 140 --SMPLFETSAKDPS-------ENDHVEAIFMTLAHK 167 (170)
T ss_pred --CCcEEEEeccCCc-------CCCCHHHHHHHHHHH
Confidence 3789999999831 117788888877653
No 181
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=1.4e-15 Score=136.31 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|..++|||||+++|++.....+.. ...................+.++|+||+++|....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV---------------PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC---------------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 479999999999999999997642100000 00000011112222334568899999999886655
Q ss_pred HhhcccCCEEEEEEeCCCCCcHH--HHHHHHHHHHc--CCCeEEEEEeccCcccHHHHHH---------HHHHHHHHHHH
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQ--TREHLLLSKQI--GIDNVVVYVNKADLVDREIMEL---------VELEVRDVLTA 192 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~q--t~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~---------i~~~i~~~l~~ 192 (463)
...+..+|++++|+|+++....+ ..+++...... ++| +++|+||+|+.+...... ..++..++...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 55668899999999998743222 22233333322 467 899999999985432211 12344445555
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+. .+++.+||+++ .++.++++.|.+
T Consensus 145 ~~~----~~~~~~Sa~~~----------~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGA----IGYMECSALTQ----------EGVKEVFEEAIR 170 (171)
T ss_pred hCC----eEEEEeecCCC----------CCHHHHHHHHhh
Confidence 442 47999999999 999999998764
No 182
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=1.3e-15 Score=140.53 Aligned_cols=155 Identities=16% Similarity=0.086 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYIKN 124 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~~~ 124 (463)
+|+++|+.|+|||||++++........ ....+.+.....+...+ ..+.|+|+||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-----------------YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------CCCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 589999999999999999965411100 00000111112233333 57889999999999877
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHH----HcCCCeEEEEEeccCcccH-HHHHHHHHHHHHHHHHcCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQ-TREHLLLSK----QIGIDNVVVYVNKADLVDR-EIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~----~l~ip~iivvvNKiD~~~~-~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
....+..+|++++|+|+.+...-+ ....+..+. ..++| +++|+||+|+.+. .... .++..+... .. .
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~--~~~~~~~~~-~~---~ 136 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP--AKDALSTVE-LD---W 136 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccccc--HHHHHHHHH-hh---c
Confidence 677788999999999998743222 222112221 14677 8899999999742 2111 111112111 11 1
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
..+++++||+++ .|+++++++|...+.
T Consensus 137 ~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDN----------ENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 367999999999 999999999987554
No 183
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.66 E-value=1.1e-15 Score=135.73 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|.+|+|||||+++|+....... ..+.. +.... ....+......+.++||||+.+|....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~-----------~~~~~---~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVED-----------YEPTK---ADSYR-KKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccc-----------cCCcc---hhhEE-EEEEECCEEEEEEEEECCChhhhhHHH
Confidence 3799999999999999999975321100 00000 00000 111223334568899999999999888
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHH-H---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLS-K---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~-~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...++.+|++++|+|..+... ....+.+... . ..++| +++|+||+|+.+.... ...+.....+.++ +
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~--~~~~~~~~~~~~~-----~ 137 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQV--SSEEAANLARQWG-----V 137 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccccccc--CHHHHHHHHHHhC-----C
Confidence 888999999999999876431 1112222221 2 25678 8899999999752110 1122333333333 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .|++++++.|.+.
T Consensus 138 ~~~~~Sa~~~----------~gi~~l~~~l~~~ 160 (164)
T cd04139 138 PYVETSAKTR----------QNVEKAFYDLVRE 160 (164)
T ss_pred eEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 8999999999 9999999988753
No 184
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.66 E-value=6e-16 Score=121.88 Aligned_cols=83 Identities=41% Similarity=0.643 Sum_probs=78.1
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccc
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERG 324 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 324 (463)
|+|+|+++|++++.|+++.|+|++|++++||++.++|.+ ..++|++|+.++.++++|.|||.|++.|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 689999999999999999999999999999999999976 468999999999999999999999999999888899999
Q ss_pred eEEec
Q psy3124 325 MLLAK 329 (463)
Q Consensus 325 ~vl~~ 329 (463)
|+|+.
T Consensus 79 ~vl~~ 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred cEEcC
Confidence 99873
No 185
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.66 E-value=1.8e-15 Score=151.00 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=98.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCCh----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGH---- 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh---- 118 (463)
...+|+++|.+|+|||||+++|++.... .+...+.|.+.....+.. ++..+.|+||||.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~----------------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY----------------AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee----------------eccCCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 4588999999999999999999864110 001113444444444444 4578999999997
Q ss_pred -----hhhHHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 119 -----ADYIKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 119 -----~~f~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
+.| ..+...+..||++++|+|++++...+ .......+..+ +.| +++|+||+|+.+..... ..
T Consensus 252 ~~~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~v~-------~~ 322 (351)
T TIGR03156 252 PHELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPRIE-------RL 322 (351)
T ss_pred CHHHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHhHH-------HH
Confidence 223 23445678899999999998765432 22222333333 566 88999999998543221 11
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.. + ..+++++||+++ .|+++|++.|..
T Consensus 323 -~~-~----~~~~i~iSAktg----------~GI~eL~~~I~~ 349 (351)
T TIGR03156 323 -EE-G----YPEAVFVSAKTG----------EGLDLLLEAIAE 349 (351)
T ss_pred -Hh-C----CCCEEEEEccCC----------CCHHHHHHHHHh
Confidence 11 1 246899999999 999999998865
No 186
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.66 E-value=2e-15 Score=149.27 Aligned_cols=157 Identities=22% Similarity=0.227 Sum_probs=100.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhh-
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHAD- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~- 120 (463)
+-...|+++|.++||||||+++|+......+... ..|.......++..+ ..+.++|+||..+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~----------------fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----------------FTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCCC----------------CCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 3457899999999999999999986522211111 123333223334444 7899999999742
Q ss_pred ------hHHHHHhhcccCCEEEEEEeCCCC----CcHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 121 ------YIKNMISGASQMDGAIVVVAASEG----QMPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 121 ------f~~~~~~~~~~aD~ailVVda~~g----~~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
......+.+..+|++++|+|++.. ...+.......+.. .+.| +++|+||+|+.++...+++.++
T Consensus 219 a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~~~~~~~~~~ 297 (329)
T TIGR02729 219 ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDEEELAELLKE 297 (329)
T ss_pred CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCChHHHHHHHHH
Confidence 334455566789999999999864 11122111122221 3556 8899999999865433333322
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+ .+.++ .+++++||+++ .++++|++.|...+
T Consensus 298 l---~~~~~-----~~vi~iSAktg----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 298 L---KKALG-----KPVFPISALTG----------EGLDELLYALAELL 328 (329)
T ss_pred H---HHHcC-----CcEEEEEccCC----------cCHHHHHHHHHHHh
Confidence 2 22222 57999999999 99999999987643
No 187
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=2.4e-15 Score=148.88 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=104.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChhh-
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHAD- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~- 120 (463)
+-...|+++|.++||||||+++|+......+.. .+.|.......+.+ +...++++|+||..+
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~y----------------pfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADY----------------PFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCC----------------CCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 345679999999999999999998652221111 13455544444444 456799999999632
Q ss_pred ------hHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 121 ------YIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 121 ------f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
+....++.+..+|++++|+|+++.. ..+.......+.. .+.| +++|+||+|+.++.... .+++..
T Consensus 220 a~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~--~~~~~~ 296 (335)
T PRK12299 220 ASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEER--EKRAAL 296 (335)
T ss_pred CCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHH--HHHHHH
Confidence 3345566677899999999998643 2222222222322 2556 88999999997543221 112222
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.++.. ..+++++||+++ .++++|+++|.+.++
T Consensus 297 ~~~~~-----~~~i~~iSAktg----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 297 ELAAL-----GGPVFLISAVTG----------EGLDELLRALWELLE 328 (335)
T ss_pred HHHhc-----CCCEEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 33322 267999999999 999999999987554
No 188
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.65 E-value=2.4e-15 Score=138.07 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|.+++|||||+++|.......+ +.....|.+.......+......+.++||||.++|....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG-------------PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc-------------CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 4799999999999999999975311100 000111222222222333223456799999999887766
Q ss_pred HhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeccCcccHHH-HHH-HHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI--GIDNVVVYVNKADLVDREI-MEL-VELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l--~ip~iivvvNKiD~~~~~~-~~~-i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|.++....+ ....+...... ++| +++|.||+|+.+... ... ..+++.++....+ +
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----A 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC-----C
Confidence 66778899999999998743222 22333333333 567 889999999864321 111 1134444444433 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++++||+++ .++++|++.|...+
T Consensus 142 ~~~~~Sa~~~----------~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTG----------QNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7899999999 89999999988644
No 189
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.65 E-value=2.1e-15 Score=134.33 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|.+++|||||+.++....... ..+.. . + ........+......+.|+||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---------~~~~t--~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE---------KYDPT--I---E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---------CCCCc--h---h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 589999999999999999986431100 00000 0 0 0111112222223457789999999998877
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|..+... ....+.+..... .++| +++|.||+|+.+...... .+...+.+..+ +
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~--~~~~~~~~~~~-----~ 138 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSS--AEGRALAEEWG-----C 138 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCH--HHHHHHHHHhC-----C
Confidence 778889999999999987432 222333222222 3677 889999999864221111 12222323322 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .++.++++.|.+.
T Consensus 139 ~~~~~Sa~~~----------~~v~~l~~~l~~~ 161 (163)
T cd04176 139 PFMETSAKSK----------TMVNELFAEIVRQ 161 (163)
T ss_pred EEEEecCCCC----------CCHHHHHHHHHHh
Confidence 8999999999 8999999988763
No 190
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=2.1e-15 Score=137.21 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=101.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|+.++|||||+.++.... + ... +...|... ..++..+..+.++||||+++|...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~-------~-----~~~---~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGE-------V-----VTT---IPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------c-----ccc---CCccccce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 5789999999999999999995320 0 000 11112221 223446788999999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH-HH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQ-MPQTREHLLLS-KQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~-~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
+...+..+|++|+|+|+++.. +....+.+... .. ...| +++|.||.|+......+ ++...+....+....
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~i~~~l~~~~~~~~~ 152 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMSTT----EVTEKLGLHSVRQRN 152 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCCHH----HHHHHhCCCcccCCc
Confidence 888889999999999997632 22223333322 21 2455 89999999986422112 222222211122233
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .|+++++++|.+.
T Consensus 153 ~~~~~~Sa~tg----------~gv~e~~~~l~~~ 176 (182)
T PTZ00133 153 WYIQGCCATTA----------QGLYEGLDWLSAN 176 (182)
T ss_pred EEEEeeeCCCC----------CCHHHHHHHHHHH
Confidence 56778999999 9999999998763
No 191
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=2.7e-15 Score=132.88 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEecCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
.+|+++|..++|||||+++|....... ......+.... ...+......+.++|+||++.|..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE----------------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 479999999999999999997541110 00111111221 122222334688999999998877
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.....+..+|++++|+|++++...+. ...+..+.. .++| +++++||+|+....... .+++.+..+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~--~~~~~~~~~~~~----- 136 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVS--KSEAEEYAKSVG----- 136 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC--HHHHHHHHHHcC-----
Confidence 77777788999999999987643222 222222222 2466 88999999997432211 133444444433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+++++|++++ .++++++++|.+.
T Consensus 137 ~~~~~~s~~~~----------~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHFETSAKTG----------KGIEELFLSLAKR 160 (162)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 57899999999 9999999998663
No 192
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.65 E-value=2e-15 Score=135.29 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe--cCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS--TNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPGh~~f~~ 123 (463)
.+|+++|..++|||||++++...... .+....+..+.....+. .....+.++||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE----------------KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc
Confidence 37999999999999999999643100 00111112222223332 2345678999999999876
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHH-HHHHH-c-CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHL-LLSKQ-I-GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l-~~~~~-l-~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
.....+..+|++|+|+|.+++..-+..+.+ ..+.. . ++| +++|.||+|+..... ..+..++.+. ..+
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~----~~~~~~~~~~-----~~~ 134 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKV----KAKQITFHRK-----KNL 134 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhcccccC----CHHHHHHHHH-----cCC
Confidence 555667889999999999875443322222 22222 2 577 899999999973221 1111222222 236
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++++||+++ .+++++++.|...+
T Consensus 135 ~~~e~Sa~~~----------~~v~~~f~~l~~~~ 158 (166)
T cd00877 135 QYYEISAKSN----------YNFEKPFLWLARKL 158 (166)
T ss_pred EEEEEeCCCC----------CChHHHHHHHHHHH
Confidence 7999999999 99999999998644
No 193
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=1.3e-15 Score=139.52 Aligned_cols=156 Identities=16% Similarity=0.117 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|..++|||||+++|....... ...... +... .....+......+.|+||||+++|.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~---------~~~~t~-----~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE---------TYDPTI-----EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---------cCCCch-----HhhE-EEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 48999999999999999996431100 000000 0000 11112222234588999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
..+..+|++|+|+|.++..... ..+.+..+.. .++| +++|.||+|+.+..... ..+..++.+.++
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~--~~~~~~~~~~~~----- 137 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVS--TEEGAALARRLG----- 137 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccC--HHHHHHHHHHhC-----
Confidence 8889999999999998754322 2223222222 3466 88999999996422211 122333344433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .+++++++.|...+.
T Consensus 138 ~~~~e~SAk~~----------~~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 CEFIEASAKTN----------VNVERAFYTLVRALR 163 (190)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999999 899999998876543
No 194
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65 E-value=4.7e-15 Score=136.97 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYIKN 124 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~~~ 124 (463)
.|+++|..++|||||+.++..... ..+....++.+.....+..++ ..+.++||+|+++|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f----------------~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF----------------CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC----------------CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 589999999999999999964311 111112223333222333343 66789999999999988
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
+...++.+|++|+|+|.++...-+. .+.+..+.. .++| +++|.||+|+.+...+. .++..++.+.. ..+
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~--~~~~~~~a~~~----~~~ 138 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIS--RQQGEKFAQQI----TGM 138 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC--HHHHHHHHHhc----CCC
Confidence 8888999999999999988543222 222333332 2466 89999999996422111 12333333332 126
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+++.+||+++ .+++++++.|...
T Consensus 139 ~~~etSAktg----------~gV~e~F~~l~~~ 161 (202)
T cd04120 139 RFCEASAKDN----------FNVDEIFLKLVDD 161 (202)
T ss_pred EEEEecCCCC----------CCHHHHHHHHHHH
Confidence 7999999999 8999988877653
No 195
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=2.7e-15 Score=151.42 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHAD--- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~--- 120 (463)
...|+++|.+|||||||+++|++....... ..+.|.......+...+ ..+.|+||||..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~----------------~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVAD----------------YPFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS 222 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccC----------------CCCCccCcEEEEEEeCCCcEEEEEeCCCcccccc
Confidence 347999999999999999999865322111 12344444444444443 4699999999643
Q ss_pred ----hHHHHHhhcccCCEEEEEEeCCC----CCcHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHH
Q psy3124 121 ----YIKNMISGASQMDGAIVVVAASE----GQMPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVR 187 (463)
Q Consensus 121 ----f~~~~~~~~~~aD~ailVVda~~----g~~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~ 187 (463)
....++..+..+|++++|||++. ....+....+..+.. .+.| +++|+||+|+.+...+.. .+.
T Consensus 223 ~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~~el~~---~l~ 298 (390)
T PRK12298 223 EGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDEEEAEE---RAK 298 (390)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCChHHHHH---HHH
Confidence 33456667888999999999872 222222333333333 2566 788999999986543322 333
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
++.+..++ ..+++++||+++ .++++|++.|...++.
T Consensus 299 ~l~~~~~~---~~~Vi~ISA~tg----------~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 299 AIVEALGW---EGPVYLISAASG----------LGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHhCC---CCCEEEEECCCC----------cCHHHHHHHHHHHhhh
Confidence 33333332 246899999999 9999999999887653
No 196
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.64 E-value=3e-15 Score=134.17 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|.+|+|||||++++.+..... ..+. ..+.. ......+......+.++||||+++|....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~---------~~~~-----t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE---------SYDP-----TIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---------ccCC-----cchhe-EEEEEEECCEEEEEEEEeCCCcccchhhh
Confidence 579999999999999999996431100 0000 00101 11112233333577899999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHH-HHHHHHH----HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQT-REHLLLS----KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|..+...-+. ..+.... ...++| ++++.||+|+.+.... ..++...+.+..+ .+
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~----~~ 139 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV--SREDGVSLSQQWG----NV 139 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc--CHHHHHHHHHHcC----Cc
Confidence 888889999999999987432211 1111211 223677 8899999999743221 1122333333332 37
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .++.++++.+...
T Consensus 140 ~~~~~SA~~~----------~~i~~~f~~i~~~ 162 (168)
T cd04177 140 PFYETSARKR----------TNVDEVFIDLVRQ 162 (168)
T ss_pred eEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 8999999999 8999999988763
No 197
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.64 E-value=3e-15 Score=132.34 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|++++|||||+++|++...... .... .. ........+......+.++|+||+.+|.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~---------~~~~--~~----~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEE---------YDPT--IE----DSYRKTIVVDGETYTLDILDTAGQEEFSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcC---------cCCC--hh----HeEEEEEEECCEEEEEEEEECCChHHHHHHHH
Confidence 589999999999999999975421100 0000 00 11111122222245788999999999888877
Q ss_pred hhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+..+|++++|+|..+... ......+..... .+.| +++|+||+|+...... ..+++..+.+..+ .|
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~-----~~ 137 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV--SKEEGKALAKEWG-----CP 137 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee--cHHHHHHHHHHcC-----Cc
Confidence 88889999999999986432 222222222222 2456 8999999999752211 1244555555543 68
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++|++++ .++++++++|...
T Consensus 138 ~~~~S~~~~----------~~i~~l~~~l~~~ 159 (160)
T cd00876 138 FIETSAKDN----------INIDEVFKLLVRE 159 (160)
T ss_pred EEEeccCCC----------CCHHHHHHHHHhh
Confidence 999999999 8999999998763
No 198
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.64 E-value=2.3e-15 Score=135.49 Aligned_cols=149 Identities=23% Similarity=0.174 Sum_probs=96.0
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhhh-------
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHADY------- 121 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~f------- 121 (463)
++|++|+|||||+++|++.... .....+.|.+.....+... +..+.++||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK----------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc----------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 5899999999999999764110 0111234444444445556 788999999997432
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCC-------cHHHHHHHHHHH----------HcCCCeEEEEEeccCcccHHHHHHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQ-------MPQTREHLLLSK----------QIGIDNVVVYVNKADLVDREIMELVEL 184 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~-------~~qt~e~l~~~~----------~l~ip~iivvvNKiD~~~~~~~~~i~~ 184 (463)
...+...+..+|++++|+|+.+.. ......+...+. ..+.| +++|+||+|+.+........
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHHHH-
Confidence 234455677899999999998762 122222222222 13667 88999999998554333221
Q ss_pred HHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 185 EVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 185 ~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.... ......+++++||+++ .+++++++.+..
T Consensus 143 -~~~~-----~~~~~~~~~~~Sa~~~----------~gl~~l~~~l~~ 174 (176)
T cd01881 143 -VREL-----ALEEGAEVVPISAKTE----------EGLDELIRAIYE 174 (176)
T ss_pred -HHHH-----hcCCCCCEEEEehhhh----------cCHHHHHHHHHh
Confidence 1111 1112467999999999 999999998865
No 199
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=6.7e-15 Score=134.56 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=105.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f 121 (463)
..++|+++|..++|||||+.++..... ..+....++.+. ..+.+......+.++||||+++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~----------------~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 68 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST----------------ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF 68 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 358999999999999999999964210 011111222222 22333333467889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
...+....+.+|++|||+|.++... ......+..+.. -++| +|+|.||+|+.....+ ..++++.+.+..+
T Consensus 69 ~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v--~~~~~~~~a~~~~---- 141 (189)
T cd04121 69 CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQV--ATEQAQAYAERNG---- 141 (189)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCC--CHHHHHHHHHHcC----
Confidence 9887777899999999999987542 223333333332 3566 8999999999632211 1234555555443
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++.+||+++ .+++++++.|...
T Consensus 142 -~~~~e~SAk~g----------~~V~~~F~~l~~~ 165 (189)
T cd04121 142 -MTFFEVSPLCN----------FNITESFTELARI 165 (189)
T ss_pred -CEEEEecCCCC----------CCHHHHHHHHHHH
Confidence 67999999999 8999998888763
No 200
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=5.8e-15 Score=131.48 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhh--cCceEEeeEEEEe-cCCeeEEEEeCCChhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKA--RGITINIAHVEYS-TNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~--~g~Ti~~~~~~~~-~~~~~i~liDtPGh~~f~ 122 (463)
++|+++|..++|||||+++|...- ...+.+.. .|.........+. .....+.++||||++.|.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNG--------------AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--------------CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 479999999999999999986420 00011111 1222222222232 244678899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
..+...+..+|++++|+|.++..... ....+..... .++| +++|+||+|+.+...... .+...+.... .
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~-----~ 138 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTD--AQAQAFAQAN-----Q 138 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCH--HHHHHHHHHc-----C
Confidence 87778889999999999998743221 1222222222 3567 889999999974322111 1112222222 2
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .|++++++.|.+.
T Consensus 139 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 162 (164)
T cd04101 139 LKFFKTSALRG----------VGYEEPFESLARA 162 (164)
T ss_pred CeEEEEeCCCC----------CChHHHHHHHHHH
Confidence 67999999999 9999999988763
No 201
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.64 E-value=5.5e-15 Score=135.33 Aligned_cols=161 Identities=15% Similarity=0.066 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
++|+++|..|+|||||+.++...... .+....+.... ...........+.|+||||+++|...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFP----------------QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccc
Confidence 47999999999999999999753110 00000111111 11222223357889999999998666
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHHHH--HHHHHHH--cCCCeEEEEEeccCcccHHHHHHH----------HHHHHHHH
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQTRE--HLLLSKQ--IGIDNVVVYVNKADLVDREIMELV----------ELEVRDVL 190 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt~e--~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i----------~~~i~~~l 190 (463)
.......+|++++|.|.++...-+..+ .+..+.. .++| +++|.||+|+.+....+.. .++..++.
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 556678899999999988754333221 2333332 2566 8999999999743221111 12233333
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
+..+ .++++++||+++ .+++++++.|...+..|
T Consensus 144 ~~~~----~~~~~e~SAk~~----------~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 144 KRIN----ALRYLECSAKLN----------RGVNEAFTEAARVALNV 176 (189)
T ss_pred HHcC----CCEEEEccCCcC----------CCHHHHHHHHHHHHhcc
Confidence 3332 368999999999 89999999998755433
No 202
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=4.3e-15 Score=133.76 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
++|+++|+.++|||||++++.+..... +.. ....+. ....+......+.++||||+.+|..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE----------------EYV-PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccc
Confidence 479999999999999999996531100 000 000111 1122222234577999999999877
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHH-H-HHHHHH--HcCCCeEEEEEeccCcccHHH-HHH---------HHHHHHHH
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTR-E-HLLLSK--QIGIDNVVVYVNKADLVDREI-MEL---------VELEVRDV 189 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~-e-~l~~~~--~l~ip~iivvvNKiD~~~~~~-~~~---------i~~~i~~~ 189 (463)
.....+..+|++++|+|..+....+.. + .+..+. ..++| ++++.||+|+.+... ... ..++...+
T Consensus 64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (174)
T cd04135 64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL 142 (174)
T ss_pred cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 666677889999999999875332222 1 122222 24677 889999999874321 111 12344455
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+.++. .+++.+||+++ .|++++++.+..
T Consensus 143 ~~~~~~----~~~~e~Sa~~~----------~gi~~~f~~~~~ 171 (174)
T cd04135 143 AKEIGA----HCYVECSALTQ----------KGLKTVFDEAIL 171 (174)
T ss_pred HHHcCC----CEEEEecCCcC----------CCHHHHHHHHHH
Confidence 555542 47999999999 999999988765
No 203
>PLN03110 Rab GTPase; Provisional
Probab=99.64 E-value=5e-15 Score=138.57 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=103.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEecCCeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPGh~~f 121 (463)
...+|+++|+.++|||||+.+|.+... ..+....+..+.. .+.+......+.|+||||+++|
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~----------------~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF----------------CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 457999999999999999999975311 0011112222322 2333333357889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
.......+..+|++++|+|.++...-+. ...+..+.. .++| +++|.||+|+....... .++.+.+....
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~--~~~~~~l~~~~---- 147 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVA--EEDGQALAEKE---- 147 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCC--HHHHHHHHHHc----
Confidence 8877778899999999999987433222 223333333 3566 88999999986322111 11222222222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+|++++||+++ .+++++++.|...+
T Consensus 148 -~~~~~e~SA~~g----------~~v~~lf~~l~~~i 173 (216)
T PLN03110 148 -GLSFLETSALEA----------TNVEKAFQTILLEI 173 (216)
T ss_pred -CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 378999999999 89999998887644
No 204
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=4.1e-15 Score=134.07 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|..++|||||+.++...... ... ....+.... ....+......+.++||||.++|...+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~------------~~~--~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP------------DYH--DPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC------------CCc--CCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHh
Confidence 68999999999999999998643110 000 000010110 112222233568899999999998887
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTR-EHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|.++...-+.. +.+..... .++| +++|.||+|+.+..... .++..++.+..+ +
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v~--~~~~~~~a~~~~-----~ 139 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQVT--TEEGRNLAREFN-----C 139 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCccC--HHHHHHHHHHhC-----C
Confidence 7888999999999999876543332 22222222 3567 88999999986432111 123334444433 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
|++++||+++ .+++++++.|...+
T Consensus 140 ~~~e~Sa~~~----------~~v~~~f~~l~~~~ 163 (172)
T cd04141 140 PFFETSAALR----------HYIDDAFHGLVREI 163 (172)
T ss_pred EEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 8999999999 89999999887643
No 205
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.63 E-value=7.2e-15 Score=137.41 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec---CCeeEEEEeCCChhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---NTRHYAHTDCPGHADYI 122 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtPGh~~f~ 122 (463)
++|+++|..++|||||+++|.+... ..+....++.+.....+.. ....+.|+||||++.|.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~----------------~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF----------------GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 4799999999999999999975311 0111112233332222332 24678899999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc-----CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI-----GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l-----~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
......++.+|++|+|+|+++... ....+.+..+... .-+++++|.||+|+..... ...++...+.+.++
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~~~~~~~-- 140 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT--VKDDKHARFAQANG-- 140 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc--cCHHHHHHHHHHcC--
Confidence 777778899999999999987432 2222222333322 1234889999999973221 11223444444443
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+++++||+++ .+++++++.|...+
T Consensus 141 ---~~~~~iSAktg----------~gv~~lf~~l~~~l 165 (215)
T cd04109 141 ---MESCLVSAKTG----------DRVNLLFQQLAAEL 165 (215)
T ss_pred ---CEEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57899999999 99999999988744
No 206
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.6e-15 Score=155.46 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI-- 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~-- 122 (463)
..+|+++|++|+|||||+|+||+.....|+.+ |+|++.....+...++.+.++|+||.-++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp----------------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP----------------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY 66 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCC----------------CeeEEEEEEEEEecCceEEEEeCCCcCCCCCC
Confidence 35599999999999999999999877776543 899999999999999999999999954431
Q ss_pred --HH--HHhhc--ccCCEEEEEEeCCCCCcHHHHHHH---HHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 123 --KN--MISGA--SQMDGAIVVVAASEGQMPQTREHL---LLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 123 --~~--~~~~~--~~aD~ailVVda~~g~~~qt~e~l---~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
.+ ....+ ..+|.++-||||+. .++++ .++..+|+| +|+++|++|......++--.+++.+ .+
T Consensus 67 S~DE~Var~~ll~~~~D~ivnVvDAtn-----LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi~ID~~~L~~---~L 137 (653)
T COG0370 67 SEDEKVARDFLLEGKPDLIVNVVDATN-----LERNLYLTLQLLELGIP-MILALNMIDEAKKRGIRIDIEKLSK---LL 137 (653)
T ss_pred CchHHHHHHHHhcCCCCEEEEEcccch-----HHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCCcccHHHHHH---Hh
Confidence 11 11122 35799999999975 34444 456778999 9999999999754332222233333 33
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
| +|++++||..+ .|++++++.+....+
T Consensus 138 G-----vPVv~tvA~~g----------~G~~~l~~~i~~~~~ 164 (653)
T COG0370 138 G-----VPVVPTVAKRG----------EGLEELKRAIIELAE 164 (653)
T ss_pred C-----CCEEEEEeecC----------CCHHHHHHHHHHhcc
Confidence 4 89999999999 999999999987443
No 207
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.63 E-value=3.9e-15 Score=123.40 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=78.1
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEEEEEeceEE
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTVTMTLLYKM 402 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v~~~~~~p~ 402 (463)
.+++|+|+|.||+++ ..+|..||++.+|+|+.+++|+|... ..+|.+|++||.+.|+|++.+|+
T Consensus 2 ~~~~F~A~i~vl~~~----~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi 77 (108)
T cd03704 2 VVTEFEAQIAILELK----RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPI 77 (108)
T ss_pred cccEEEEEEEEEeCC----CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcE
Confidence 468899999999974 25799999999999999999999721 12357999999999999999999
Q ss_pred eeccC------CeEEEEeCCceEEEEEEeee
Q psy3124 403 YLSKG------QTFTIRENNKLVATGIVTKV 427 (463)
Q Consensus 403 ~~~~~------~rfilr~~~~tig~G~V~~~ 427 (463)
|+|.+ +||+||++|+|+|+|.|+++
T Consensus 78 ~~e~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 78 CLEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EEEEcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 99987 89999999999999999764
No 208
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.63 E-value=2.9e-15 Score=128.24 Aligned_cols=136 Identities=24% Similarity=0.251 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC----hhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG----HADY 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----h~~f 121 (463)
.+|.++|++++|||||+.+|.+.. .....|..+ .|. + .+||||| +..|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~--------------------~~~~KTq~i---~~~--~---~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE--------------------IRYKKTQAI---EYY--D---NTIDTPGEYIENPRF 53 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC--------------------CCcCcccee---Eec--c---cEEECChhheeCHHH
Confidence 479999999999999999996531 111223322 121 1 3599999 6667
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...++.....||.+++|.||++... ..--..+..+..| +|-||||+|+. +.... +..+++|+..|+.
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~p-vIGVITK~Dl~~~~~~i----~~a~~~L~~aG~~---- 121 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKP-VIGVITKIDLPSDDANI----ERAKKWLKNAGVK---- 121 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCC-EEEEEECccCccchhhH----HHHHHHHHHcCCC----
Confidence 7888888889999999999997532 1112345566767 89999999998 33333 3556677777874
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.++.+|+.++ +|+++|.++|.
T Consensus 122 ~if~vS~~~~----------eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIFEVSAVTG----------EGIEELKDYLE 142 (143)
T ss_pred CeEEEECCCC----------cCHHHHHHHHh
Confidence 3699999999 99999999885
No 209
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=5.5e-15 Score=151.66 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=102.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++.++|+++|++|+|||||+++|++... .......|.|.+.....+..++..+.++||||..++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~---------------aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR---------------AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 3457999999999999999999976310 0011224778887777777888899999999985542
Q ss_pred H--------HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 123 K--------NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 123 ~--------~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
. .....+..+|++++|+|++.+...+.. .+..+...+.| +++|+||+|+.+.+ . ..+.+.+
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~~-~-------~~~~~~~- 334 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKINS-L-------EFFVSSK- 334 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCcc-h-------hhhhhhc-
Confidence 2 234567889999999999887654443 44445545777 88999999997431 1 1111222
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..|++.+||++ .|+.++++.|..
T Consensus 335 ----~~~~~~vSak~-----------~gI~~~~~~L~~ 357 (442)
T TIGR00450 335 ----VLNSSNLSAKQ-----------LKIKALVDLLTQ 357 (442)
T ss_pred ----CCceEEEEEec-----------CCHHHHHHHHHH
Confidence 25789999986 355555555544
No 210
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.62 E-value=4.1e-15 Score=132.98 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=99.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHh
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMIS 127 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~ 127 (463)
|+++|..++|||||++++.+...... . ....|. ....+...+..+.++||||+++|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~-----------~---~pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES-----------V---VPTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc-----------c---cccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 78999999999999999975311100 0 001111 12334556788999999999999888888
Q ss_pred hcccCCEEEEEEeCCCCCc-HHHHHHHHHHH--HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEE
Q psy3124 128 GASQMDGAIVVVAASEGQM-PQTREHLLLSK--QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVF 204 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~~-~qt~e~l~~~~--~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~ 204 (463)
.+..+|++++|+|+++... ...++.+..+. .-++| +++|.||+|+..+...+++.+.+. +..+. ....+++++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~--~~~~~-~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAARSVQEIHKELE--LEPIA-RGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCCCHHHHHHHhC--Chhhc-CCCceEEEE
Confidence 8999999999999987432 22333333332 14667 889999999875432232222210 11111 123477888
Q ss_pred ccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 205 GSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 205 ~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+||++..+..+ .++++++++.|.+
T Consensus 140 ~Sa~~~~s~~~----~~~v~~~~~~~~~ 163 (164)
T cd04162 140 TSLDDDGSPSR----MEAVKDLLSQLIN 163 (164)
T ss_pred eeecCCCChhH----HHHHHHHHHHHhc
Confidence 98888311111 1788888887754
No 211
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=5.6e-15 Score=132.48 Aligned_cols=160 Identities=21% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|..++|||||+++|.+... . ....|+......+...+..+.++|+||+.+|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~-----------------~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--K-----------------KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--c-----------------cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999975300 0 001111111223445678899999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC-CCCCC
Q psy3124 127 SGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY-DGDNT 200 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~-~~~~~ 200 (463)
..+..+|++++|+|+++.. +....+.+..+.. .++| +++|+||+|+.+.....++.+.+. +..+.- ....+
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~~~i~~~~~--l~~~~~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLGADVIEYLS--LEKLVNENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCHHHHHHhcC--cccccCCCCceE
Confidence 8899999999999998743 2333333333322 3566 889999999975332222222210 111110 11236
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++++||+++... |. ..|+.+-+++|..
T Consensus 139 ~~~~~Sa~~g~~~---~~-~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGK---KI-DPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCC---cc-ccCHHHHHHHHhc
Confidence 7889999986111 00 1578888888853
No 212
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=7.8e-15 Score=132.65 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee-EEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA-HVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.+|+++|..++|||||+.++...... .+....+..+.. ...+......+.|+||||+++|...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~----------------~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP----------------SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh
Confidence 58999999999999999999643110 000001111111 1122222356789999999999776
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHH-HHH-HHHHHHH--cCCCeEEEEEeccCcccHHH-HHHH---------HHHHHHHH
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQ-TRE-HLLLSKQ--IGIDNVVVYVNKADLVDREI-MELV---------ELEVRDVL 190 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~q-t~e-~l~~~~~--l~ip~iivvvNKiD~~~~~~-~~~i---------~~~i~~~l 190 (463)
....++.+|++|+|+|.++...-+ ..+ ++..... -++| +|+|.||+|+.+... .+.+ .++..++.
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 666788999999999998754322 222 2222322 2566 899999999864321 1111 12233333
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+..+ .++++++||+++ .|++++++.+..
T Consensus 145 ~~~~----~~~~~e~SA~tg----------~~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLK----AVKYVECSALTQ----------KGLKNVFDEAIL 172 (175)
T ss_pred HHhC----CcEEEEecCCCC----------CCHHHHHHHHHH
Confidence 3332 367999999999 999999988765
No 213
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.62 E-value=8.9e-15 Score=132.58 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|++|+|||||+++|++....... ...... .. .....+......+.++||||+.+|....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------~~t~~~----~~---~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------YPTIEN----TF---SKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------Ccchhh----hE---EEEEEECCEEEEEEEEECCChHhhHHHH
Confidence 68999999999999999999753111000 000000 00 1111222233567899999999998777
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHH-HHHH-HHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTR-EHLL-LSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~-e~l~-~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|.++....+.. +.+. ++.. .++| +++|+||+|+....... ..++..+...++ .
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~--~~~~~~~~~~~~-----~ 138 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVS--TEEGKELAESWG-----A 138 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccC--HHHHHHHHHHcC-----C
Confidence 7788899999999999875432222 2112 2222 3567 88999999986422111 122333333332 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
|++++||+++ .++.+++++|...+
T Consensus 139 ~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (180)
T cd04137 139 AFLESSAREN----------ENVEEAFELLIEEI 162 (180)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999999 89999998887643
No 214
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.62 E-value=4.4e-15 Score=116.03 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=74.7
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccc
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERG 324 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 324 (463)
|||+|.++|+.++.|+.++|+|++|.+++||++.++|.+ ..++|++|+.++.++++|.|||+|+++|+ +..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--KTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--CeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCC
Confidence 689999999988888889999999999999999999976 56899999999999999999999999998 46789999
Q ss_pred eEEec
Q psy3124 325 MLLAK 329 (463)
Q Consensus 325 ~vl~~ 329 (463)
++||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99984
No 215
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.62 E-value=3.8e-15 Score=133.03 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh-HHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY-IKNM 125 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f-~~~~ 125 (463)
+|+++|+.++|||||+.++...... +. .+.... +.......+......+.++||||+..+ ...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~--------~~~t~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GE--------YDPNLE------SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cc--------cCCChH------HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 4899999999999999998642100 00 000000 111111223333346789999999863 3445
Q ss_pred HhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
...++.+|++++|+|+++...-+ ....+..+.. .++| +++|.||+|+....... .++...+.+..+
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~----- 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVS--TEEGEKLASELG----- 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccC--HHHHHHHHHHcC-----
Confidence 66778899999999998754322 2222222222 3677 88999999986432111 123333433333
Q ss_pred CcEEEccchhhccCCCCCCCCc-cHHHHHHHhhh
Q psy3124 200 TPFVFGSALLALQGDSSELGEP-SIHRLLDALDK 232 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~-~i~~Ll~~L~~ 232 (463)
.|++++||+++ . +++++++.|..
T Consensus 138 ~~~~e~Sa~~~----------~~~v~~~f~~l~~ 161 (165)
T cd04146 138 CLFFEVSAAED----------YDGVHSVFHELCR 161 (165)
T ss_pred CEEEEeCCCCC----------chhHHHHHHHHHH
Confidence 57999999987 5 79999988865
No 216
>KOG0094|consensus
Probab=99.62 E-value=4e-14 Score=124.41 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=122.7
Q ss_pred cccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 38 SSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 38 ~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
.+.......+++++|..++|||+|+.+......++..... -|+......+.++....++.+|||+|
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqAT--------------IGiDFlskt~~l~d~~vrLQlWDTAG 80 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQAT--------------IGIDFLSKTMYLEDRTVRLQLWDTAG 80 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccce--------------eeeEEEEEEEEEcCcEEEEEEEeccc
Confidence 3334444589999999999999999998765433221111 12222233344455566788999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCC---CeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASE-GQMPQTREHLLLSKQIGI---DNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~-g~~~qt~e~l~~~~~l~i---p~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
+++|....-++++.+.+||+|.|.++ .-+.+|...+.-+...+- ..+++|.||.||+++..+..- +-....+++
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~e--Eg~~kAkel 158 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIE--EGERKAKEL 158 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHH--HHHHHHHHh
Confidence 99999999999999999999999876 446788877776655432 336778899999987554432 223444454
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
+ +-++.+||+.| .++.+|+..|...+|.+..
T Consensus 159 ~-----a~f~etsak~g----------~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 159 N-----AEFIETSAKAG----------ENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred C-----cEEEEecccCC----------CCHHHHHHHHHHhccCccc
Confidence 4 46899999999 9999999999887777644
No 217
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1.7e-14 Score=131.32 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|..++|||||+.++....... + .....|.........+......+.++||+|+++|...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-----------~---~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-----------D---YIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------C---CCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 479999999999999999996531100 0 00111222221222333233568899999999998777
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc--CCCeEEEEEeccCccc---HHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI--GIDNVVVYVNKADLVD---REIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l--~ip~iivvvNKiD~~~---~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
...++.+|++++|+|+++... ....+.+..+... ..++ |+|.||+|+.. ....+.+.++..++.+..+
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~----- 140 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK----- 140 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----
Confidence 778899999999999987432 2222333333332 2233 47899999962 1111222344444444433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+++++||+++ .+++++++.|...+
T Consensus 141 ~~~~e~SAk~g----------~~v~~lf~~l~~~l 165 (182)
T cd04128 141 APLIFCSTSHS----------INVQKIFKIVLAKA 165 (182)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 99999999887644
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=148.76 Aligned_cols=155 Identities=21% Similarity=0.185 Sum_probs=117.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD-- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~-- 120 (463)
+.-++++++|.||+|||||+|+|++. |+.-.....|.|-|+-...+..++..+.++||+|.++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~---------------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGR---------------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcC---------------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 34689999999999999999999754 2222334459999999999999999999999999654
Q ss_pred -h-----HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 121 -Y-----IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 121 -f-----~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
. +......+..||.+++|+|++++...+....+. +...+.| +++|+||+|+.++...... +
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~~~~---------~-- 346 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIELESE---------K-- 346 (454)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhcccccccchh---------h--
Confidence 2 333456678899999999999986666666655 3444556 8899999999865331111 1
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.. ...|++.+|++++ .|++.|.++|.+.+..
T Consensus 347 ~~-~~~~~i~iSa~t~----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 347 LA-NGDAIISISAKTG----------EGLDALREAIKQLFGK 377 (454)
T ss_pred cc-CCCceEEEEecCc----------cCHHHHHHHHHHHHhh
Confidence 11 2357999999999 9999999999886543
No 219
>KOG0092|consensus
Probab=99.62 E-value=7.7e-15 Score=128.93 Aligned_cols=165 Identities=20% Similarity=0.208 Sum_probs=115.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
...+|+++|..++|||||+-++..... +. ..|..-|...-...........++.||||.|+++|-.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F-------------~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQF-------------HE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS 69 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcc-------------cc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc
Confidence 468999999999999999988854311 10 1133333333333333434456788999999999977
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcCCCeEEE--EEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQIGIDNVVV--YVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~ip~iiv--vvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
-.--+.++|++||+|.|.++-.. .+.+..+.-+....-|.+++ |.||+|+.+... .-.++...+.+..| .
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~--V~~~ea~~yAe~~g-----l 142 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE--VEFEEAQAYAESQG-----L 142 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc--ccHHHHHHHHHhcC-----C
Confidence 76678899999999999997543 44455555555554465666 789999986322 22345666666655 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
+++.+||+++ .++++++..|...+|....
T Consensus 143 l~~ETSAKTg----------~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 143 LFFETSAKTG----------ENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEEEEecccc----------cCHHHHHHHHHHhccCccc
Confidence 7999999999 9999999999997776543
No 220
>PLN03108 Rab family protein; Provisional
Probab=99.61 E-value=1.3e-14 Score=135.17 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|+.++|||||+++|+...... . .....+.+.......+......+.++||||+++|...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-----------~---~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------V---HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-----------C---CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 5799999999999999999997541110 0 0001122222222233323345789999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
....+..+|++|+|+|++....-+. .+.+..... ..+| ++++.||+|+....... .++..++.+..+ +
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~--~~~~~~~~~~~~-----~ 143 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS--TEEGEQFAKEHG-----L 143 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCCC--HHHHHHHHHHcC-----C
Confidence 8888889999999999987432222 222222222 2466 88999999997432111 233444454443 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
|++.+||+++ .+++++++.+...+
T Consensus 144 ~~~e~Sa~~~----------~~v~e~f~~l~~~~ 167 (210)
T PLN03108 144 IFMEASAKTA----------QNVEEAFIKTAAKI 167 (210)
T ss_pred EEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999999 88988887776533
No 221
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.61 E-value=1.5e-14 Score=133.34 Aligned_cols=156 Identities=16% Similarity=0.049 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhhH-
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADYI- 122 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f~- 122 (463)
.+|+++|..++|||||++++.+.... .+....++.+. ....+......+.|+||||+.+|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~----------------~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP----------------EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC----------------cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 47999999999999999999753110 00011111111 112232223567899999976542
Q ss_pred -------HHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHH------HcCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 123 -------KNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSK------QIGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 123 -------~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~------~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
......+..+|++|+|+|+++...-+. ...+.... ..++| +++|.||+|+....... .+++.+
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~--~~~~~~ 141 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAP--RHVLSV 141 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECcccccccccc--HHHHHH
Confidence 113345688999999999987543222 12222222 23567 88999999996432111 123333
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.++. ..+|++++||+++ .++++|++.+...+
T Consensus 142 ~~~~~----~~~~~~e~Sak~g----------~~v~~lf~~i~~~~ 173 (198)
T cd04142 142 LVRKS----WKCGYLECSAKYN----------WHILLLFKELLISA 173 (198)
T ss_pred HHHHh----cCCcEEEecCCCC----------CCHHHHHHHHHHHh
Confidence 33322 2478999999999 89999998887644
No 222
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=1.1e-14 Score=131.54 Aligned_cols=157 Identities=17% Similarity=0.111 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCce-EEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGIT-INIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+++|+++|..++|||||+.++...... .+....+. .......+......+.|+||||+++|..
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFP----------------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCC----------------CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh
Confidence 368999999999999999998643110 00000000 0001122333335678999999999987
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHH--cCCCeEEEEEeccCcccH-HHHHHH---------HHHHHHH
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQ--IGIDNVVVYVNKADLVDR-EIMELV---------ELEVRDV 189 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~--l~ip~iivvvNKiD~~~~-~~~~~i---------~~~i~~~ 189 (463)
.....+..+|++|+|+|.++...-+.. .++..... -++| +++|.||+|+.+. ...+.+ .++..++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 777788899999999999874432222 23332322 2466 8899999999632 111111 1233444
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+.++ .++++++||+++ .+++++++.+..
T Consensus 144 ~~~~~----~~~~~e~Sa~~~----------~~i~~~f~~l~~ 172 (174)
T cd01871 144 AKEIG----AVKYLECSALTQ----------KGLKTVFDEAIR 172 (174)
T ss_pred HHHcC----CcEEEEeccccc----------CCHHHHHHHHHH
Confidence 44443 258999999999 999999998865
No 223
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=1.2e-14 Score=132.64 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEe-cCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYS-TNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~-~~~~~i~liDtPGh~~f~~ 123 (463)
++|+++|..++|||||+++|.+.... .+....+..+. ...... .....+.++||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP----------------EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC----------------CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH
Confidence 47999999999999999999753110 00000111111 111121 2234678999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHH-H-HHHHHH--HcCCCeEEEEEeccCcccHHHH--HHHHHHHHHHHHHcCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTR-E-HLLLSK--QIGIDNVVVYVNKADLVDREIM--ELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~-e-~l~~~~--~l~ip~iivvvNKiD~~~~~~~--~~i~~~i~~~l~~~g~~~ 197 (463)
.....+..+|++++|+|+++...-+.. . ++.... ..++| +++|.||+|+.+.... ....++..++....+.
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 777788899999999999874432222 2 222222 13567 8899999999642200 0112344455555442
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+++.+||+++ .++.++++.+...+
T Consensus 142 --~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 166 (187)
T cd04132 142 --FAYLECSAKTM----------ENVEEVFDTAIEEA 166 (187)
T ss_pred --cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 37899999999 89999888887643
No 224
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.2e-14 Score=149.23 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=103.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD-- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~-- 120 (463)
|-...|+++|.++||||||+++|++....... ..+.|.......+...+..++++||||..+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIad----------------ypfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIAD----------------YPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccc----------------cCcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 44578999999999999999999865222111 124555555555666778899999999532
Q ss_pred -----hHHHHHhhcccCCEEEEEEeCCCC-----CcHH---HH-HHHHHH----------HHcCCCeEEEEEeccCcccH
Q psy3124 121 -----YIKNMISGASQMDGAIVVVAASEG-----QMPQ---TR-EHLLLS----------KQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 121 -----f~~~~~~~~~~aD~ailVVda~~g-----~~~q---t~-e~l~~~----------~~l~ip~iivvvNKiD~~~~ 176 (463)
.....++.+..+|++|+|||++.. ...+ .. |...+. ...+.| +|||+||+|+.+.
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da 299 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDVPDA 299 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccchhh
Confidence 122345556779999999999741 1111 11 111222 223566 7899999999754
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 177 EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 177 ~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.. +.+.+.+.++..+ +|++++||+++ .++++|+++|.+.+.
T Consensus 300 ~e---l~e~l~~~l~~~g-----~~Vf~ISA~tg----------eGLdEL~~~L~ell~ 340 (500)
T PRK12296 300 RE---LAEFVRPELEARG-----WPVFEVSAASR----------EGLRELSFALAELVE 340 (500)
T ss_pred HH---HHHHHHHHHHHcC-----CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 32 2223333444433 67999999999 999999998877553
No 225
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=1.6e-14 Score=132.03 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|..++|||||+++|.+.... . ......|.+.......+......+.++||||+++|....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~------------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS------------E--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC------------C--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 47999999999999999999743110 0 001111222222223333334567899999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
...+..+|++++|+|+++... ....+++.....+ .+| ++++.||+|+.+..... ..+...+....+ +|
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~--~~~~~~~~~~~~-----~~ 138 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVD--SNIAKSFCDSLN-----IP 138 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCC--HHHHHHHHHHcC-----Ce
Confidence 888899999999999987432 1122222223222 345 89999999987322111 112223333333 57
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++.+||+++ .+++++++.|...+
T Consensus 139 ~~evSa~~~----------~~i~~~f~~l~~~~ 161 (188)
T cd04125 139 FFETSAKQS----------INVEEAFILLVKLI 161 (188)
T ss_pred EEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 999999999 89988888876643
No 226
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=1.3e-14 Score=130.66 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=97.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEE-eeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITIN-IAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
|+++|..++|||||++++.+.... .+....+... .....+......+.++||||+++|.....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP----------------EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 589999999999999999753110 0000001111 11122222234588999999999877666
Q ss_pred hhcccCCEEEEEEeCCCCCcHHH-HH-HHHHHHH--cCCCeEEEEEeccCcccHH-HHHHH---------HHHHHHHHHH
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQT-RE-HLLLSKQ--IGIDNVVVYVNKADLVDRE-IMELV---------ELEVRDVLTA 192 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~qt-~e-~l~~~~~--l~ip~iivvvNKiD~~~~~-~~~~i---------~~~i~~~l~~ 192 (463)
..+..+|++|+|+|.++...-+. .. .+..... .++| +++|.||+|+.+.. ..+.+ .++..++.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 67789999999999987432111 11 2222222 2667 89999999997421 11111 1234445555
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+. .+++++||+++ .+++++++.+...
T Consensus 144 ~~~----~~~~e~Sa~~~----------~~v~~lf~~l~~~ 170 (174)
T smart00174 144 IGA----VKYLECSALTQ----------EGVREVFEEAIRA 170 (174)
T ss_pred cCC----cEEEEecCCCC----------CCHHHHHHHHHHH
Confidence 442 47899999999 9999999988763
No 227
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.60 E-value=1.9e-14 Score=129.59 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|+.++|||||+.++.+...... ..+ ..+... .....+......+.++||||+++|....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-----------~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-----------YVP---TVFENY-VADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-----------CCC---ccccce-EEEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 5799999999999999999975311100 000 000001 1122233333467899999999987766
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHH-HHHHH--cCCCeEEEEEeccCcccHHHH-HHH---------HHHHHHHHH
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHL-LLSKQ--IGIDNVVVYVNKADLVDREIM-ELV---------ELEVRDVLT 191 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l-~~~~~--l~ip~iivvvNKiD~~~~~~~-~~i---------~~~i~~~l~ 191 (463)
...+..+|++++|.|.++... ....+.+ ..... .++| +++|.||+|+.+.... +.+ ..+.+++.+
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 667789999999999876322 1111222 22222 3667 8899999998743211 111 122333333
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..+ ..+++++||+++ .+++++++.|..
T Consensus 146 ~~~----~~~~~~~Sa~~~----------~~v~~lf~~l~~ 172 (175)
T cd01870 146 KIG----AFGYMECSAKTK----------EGVREVFEMATR 172 (175)
T ss_pred HcC----CcEEEEeccccC----------cCHHHHHHHHHH
Confidence 333 357999999999 999999998875
No 228
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.60 E-value=2.3e-14 Score=134.37 Aligned_cols=158 Identities=14% Similarity=0.055 Sum_probs=102.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|..|+|||||+.++...... ...+...|.+.....+........+.++||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~--------------~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCC--------------CccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 56789999999999999999998643110 0001111223222222222334678899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHH--HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTR-EHLLLSK--QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~--~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.......+.+|++|+|+|.++...-+.. +.+.... ..++| +++|.||+|+.+.... .+++ .+... ..
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~---~~~~-~~~~~-----~~ 146 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK---AKQV-TFHRK-----KN 146 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCC---HHHH-HHHHh-----cC
Confidence 7776778899999999999875432222 2222222 23567 8899999998632111 1122 22222 23
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++.+||+++ .++.+++++|...+
T Consensus 147 ~~~~e~SAk~~----------~~i~~~f~~l~~~~ 171 (219)
T PLN03071 147 LQYYEISAKSN----------YNFEKPFLYLARKL 171 (219)
T ss_pred CEEEEcCCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 89999998887644
No 229
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60 E-value=1.7e-14 Score=130.44 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|+.++|||+|+.++...... +. .+..-|.+.. ....++....++.|+||+|+++|....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~------------~~--~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP------------TD--YIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC------------CC--CCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccc
Confidence 57999999999999999999743110 00 0000011111 112223334567899999999998877
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHH--cCCCeEEEEEeccCcccHHHH--------HHHHHHHHHHHHHc
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQ--IGIDNVVVYVNKADLVDREIM--------ELVELEVRDVLTAY 193 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~--------~~i~~~i~~~l~~~ 193 (463)
...++.+|++|||.|.++...-+. ...+..+.. -++| +++|.||+|+.+.... ....++..++.+..
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 145 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI 145 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc
Confidence 778899999999999987543222 223333332 3566 8999999999643210 01233445555544
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+. .+++.+||+++ .+++++++.+.+.+
T Consensus 146 ~~----~~~~E~SAk~~----------~nV~~~F~~~~~~~ 172 (176)
T cd04133 146 GA----AAYIECSSKTQ----------QNVKAVFDAAIKVV 172 (176)
T ss_pred CC----CEEEECCCCcc----------cCHHHHHHHHHHHH
Confidence 32 36999999999 89999999887744
No 230
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.60 E-value=1.4e-14 Score=117.50 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=87.2
Q ss_pred ceEEecCCCccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEe
Q psy3124 324 GMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403 (463)
Q Consensus 324 G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~ 403 (463)
|++++.++..++++.|++++.++... .+|+++++.+++|+++.++.|++.+.+. +.+++|+.+.++|+|++|++
T Consensus 1 G~vl~~~~~~~~~~~~~~~i~~l~~~----~~~l~~~~~v~~~~Gt~~v~~ri~ll~~--~~~~pg~~~~a~l~l~~pl~ 74 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSA----PRPLKHRQRVHLHHGTSEVLARVVLLDR--DELAPGEEALAQLRLEEPLV 74 (97)
T ss_pred CCEEecCCCcCCceEEEEEEEEECCC----CccCCCCCeEEEEeccceEEEEEEeCCc--cccCCCCEEEEEEEECCcEe
Confidence 78999988877789999999999865 3689999999999999999999998864 68999999999999999999
Q ss_pred eccCCeEEEEeCC--ceEEEEEE
Q psy3124 404 LSKGQTFTIRENN--KLVATGIV 424 (463)
Q Consensus 404 ~~~~~rfilr~~~--~tig~G~V 424 (463)
+++|+||+||+.+ +|+|+|+|
T Consensus 75 ~~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 75 ALRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred ecCCCeEEEeeCCCCeEEEeEEC
Confidence 9999999999998 89999986
No 231
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.60 E-value=1e-14 Score=131.41 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
++++++|+.++|||||+.++...... . +.. ....+. ....+......+.++||||+++|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~------------~----~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP------------T----EYV-PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC------------C----CCC-CceeeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 47999999999999999988643110 0 000 111111 1222332345678999999999877
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHH--cCCCeEEEEEeccCcccHHH-H---------HHHHHHHHHH
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQ--IGIDNVVVYVNKADLVDREI-M---------ELVELEVRDV 189 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~--l~ip~iivvvNKiD~~~~~~-~---------~~i~~~i~~~ 189 (463)
.....++.+|++|+|.|..+...-+. ...+..... .++| ++++.||+|+.+... . ....++...+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 76677889999999999987543222 222333332 3566 899999999974221 0 0011234444
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.+..+. .+++++||+++ .|++++++.+.
T Consensus 143 a~~~~~----~~~~e~Sa~~~----------~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGA----CEYIECSALTQ----------KNLKEVFDTAI 170 (173)
T ss_pred HHHhCC----CeEEEEeCCCC----------CCHHHHHHHHH
Confidence 444432 47999999999 99999988764
No 232
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=1.8e-14 Score=129.44 Aligned_cols=162 Identities=16% Similarity=0.056 Sum_probs=101.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++..+|+++|..|+|||||++++.+..... + ......+.........+......+.++|++|.+.|.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~-----------~--~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL-----------N--AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCc-----------c--cCCCccCcceEEEEEEECCeEEEEEEEecCCccccc
Confidence 457899999999999999999997541110 0 000011111222223333333567899999999887
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
......+..+|++++|+|+++...-+ ..+.+..... .++| +++|+||+|+.+.... ...+..++.+.+++ .
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~----~ 141 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR--YEVQPDEFCRKLGL----P 141 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccc--cccCHHHHHHHcCC----C
Confidence 66666678999999999997742211 1122222211 2566 8999999999643211 11122333344443 2
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++++||+++ .+++++++.|...+
T Consensus 142 ~~~~~Sa~~~----------~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 PPLHFSSKLG----------DSSNELFTKLATAA 165 (169)
T ss_pred CCEEEEeccC----------ccHHHHHHHHHHHh
Confidence 3589999999 89999999887744
No 233
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.60 E-value=1.8e-14 Score=137.16 Aligned_cols=161 Identities=14% Similarity=0.046 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|..++|||||++++........ ..... + ........+......+.|+||+|+++|....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~---------y~pTi-----~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQ---------YTPTI-----E-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCC---------CCCCh-----h-HhEEEEEEECCEEEEEEEEECCCChhhhHHH
Confidence 3799999999999999999974311100 00000 0 0111112232333567899999999987665
Q ss_pred HhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH------------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ------------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~------------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
...+..+|++|+|+|.++...-+ ....+..... .++| +|+|.||+|+..... ...+++.+++..
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~--v~~~ei~~~~~~ 142 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPRE--VQRDEVEQLVGG 142 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccc--cCHHHHHHHHHh
Confidence 56678899999999998743211 1222222211 2566 889999999974211 112344444432
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV 238 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~ 238 (463)
. ..++++++||+++ .+++++++.|......|.
T Consensus 143 ~----~~~~~~evSAktg----------~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 143 D----ENCAYFEVSAKKN----------SNLDEMFRALFSLAKLPN 174 (247)
T ss_pred c----CCCEEEEEeCCCC----------CCHHHHHHHHHHHhcccc
Confidence 1 2467999999999 999999999988654444
No 234
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.60 E-value=1.9e-14 Score=134.57 Aligned_cols=158 Identities=16% Similarity=0.060 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|..++|||||++++...... + . ..|+........+....+.|+||||++.|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~------------~-----~--~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK------------D-----T--VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC------------C-----C--CCccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 47999999999999999999643110 0 0 112211112222345678999999999998877
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHH-----------------HHHHHHH
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDRE-----------------IMELVEL 184 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~-----------------~~~~i~~ 184 (463)
...++.+|++|+|+|+++...-+. .+.+..+.. .++| +|+|.||+|+.+.+ ......+
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHH
Confidence 778899999999999987432222 222222222 2456 89999999997411 0111123
Q ss_pred HHHHHHHHcCC--------C-CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 185 EVRDVLTAYGY--------D-GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 185 ~i~~~l~~~g~--------~-~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+...+.++.+. . ...+|++++||+++ .+++++++.+.+.
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----------~~V~elf~~i~~~ 188 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----------YNVDELFEYLFNL 188 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 44444444331 0 11268999999999 8999998888753
No 235
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.59 E-value=1e-14 Score=116.02 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=77.1
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEe-ceEEeeccCCeEEEE
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTL-LYKMYLSKGQTFTIR 413 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~-~~p~~~~~~~rfilr 413 (463)
++++|+|++.||+++ +||..||.+++|+++.+++|++..... +++++||.+.|+|+| .+|+|+++++||+||
T Consensus 2 ~~~~f~A~i~il~~~-----~~i~~Gy~~~l~~~t~~~~~~i~~i~~--~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr 74 (87)
T cd03708 2 ACWEFEAEILVLHHP-----TTISPGYQATVHIGSIRQTARIVSIDK--DVLRTGDRALVRFRFLYHPEYLREGQRLIFR 74 (87)
T ss_pred ceeEEEEEEEEEcCC-----CcccCCCEeEEEEcCCEEEEEEEeccH--hhccCCCeEEEEEEECCCCcEEccCCeEEEE
Confidence 578999999999974 789999999999999999999986644 789999999999996 799999999999998
Q ss_pred eCCceEEEEEEeee
Q psy3124 414 ENNKLVATGIVTKV 427 (463)
Q Consensus 414 ~~~~tig~G~V~~~ 427 (463)
++ +|+|+|+|+++
T Consensus 75 ~g-~tva~G~I~~~ 87 (87)
T cd03708 75 EG-RTKGVGEVTKV 87 (87)
T ss_pred CC-CcEEEEEEEEC
Confidence 87 99999999864
No 236
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.59 E-value=3.7e-14 Score=126.31 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--CeeEEEEeCCChhhhHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--TRHYAHTDCPGHADYIK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPGh~~f~~ 123 (463)
.+|+++|+.++|||||+.++...... .+....+..+.....+... ...+.++||||.++|..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH----------------SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh
Confidence 37999999999999999998643110 1111122222222223333 35678999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.+......+|++++|+|.++... ......+...... ++| +++|.||+|+..+.... .++...+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~--~~~~~~~~~~~~----- 136 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVG--DEQGNKLAKEYG----- 136 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC--HHHHHHHHHHcC-----
Confidence 77778889999999999886422 1222222222222 455 88999999996432211 123333333332
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+|++++||+++ .+++++++.|..
T Consensus 137 ~~~~e~Sa~~~----------~~v~~~f~~l~~ 159 (161)
T cd04117 137 MDFFETSACTN----------SNIKESFTRLTE 159 (161)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHh
Confidence 67999999999 899999998865
No 237
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.59 E-value=3e-14 Score=130.67 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee---EEEEecCCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA---HVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~---~~~~~~~~~~i~liDtPGh~~f 121 (463)
..+|+++|..++|||||+.++...... ++. ..|+... ...+......+.++||||+++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~----------------~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP----------------KEY--IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC----------------cCC--CCceEeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 478999999999999999998643110 000 1122111 1122223356789999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHH-HHH-HHHHH--cCCCeEEEEEeccCcccHHH-HHHH---------HHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTR-EHL-LLSKQ--IGIDNVVVYVNKADLVDREI-MELV---------ELEVR 187 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~-e~l-~~~~~--l~ip~iivvvNKiD~~~~~~-~~~i---------~~~i~ 187 (463)
........+.+|++|+|.|.++...-+.. ..+ ..... -++| +++|.||+|+.+... .+.+ .++..
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 88777788899999999999874322222 112 21221 3567 899999999963211 1111 12333
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
++.+..+ .++++.+||+++ .|++++++.|...+..|
T Consensus 144 ~~a~~~~----~~~~~e~SAk~g----------~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 144 ALAKQIH----AVKYLECSALNQ----------DGVKEVFAEAVRAVLNP 179 (191)
T ss_pred HHHHHcC----CcEEEEeCCCCC----------CCHHHHHHHHHHHHhcc
Confidence 3433333 268999999999 89999999988755433
No 238
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=1.3e-14 Score=154.18 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=103.4
Q ss_pred cCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH-----HH
Q psy3124 52 GHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN-----MI 126 (463)
Q Consensus 52 G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~-----~~ 126 (463)
|.+|+|||||+|+|++.... .....|+|++.....++.++..+.++||||+.+|... +.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~----------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT----------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe----------------ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 88999999999999865211 1123488988877777778888999999999886432 11
Q ss_pred h---hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEE
Q psy3124 127 S---GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFV 203 (463)
Q Consensus 127 ~---~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi 203 (463)
+ ....+|++++|+|+++. ....+....+...++| +++|+||+|+.++...+. +.+++-+.+| +|++
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i~~---d~~~L~~~lg-----~pvv 133 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP-MILALNLVDEAEKKGIRI---DEEKLEERLG-----VPVV 133 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCChh---hHHHHHHHcC-----CCEE
Confidence 1 22468999999999873 2233334455567888 889999999974332221 2233333333 6899
Q ss_pred EccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 204 FGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 204 ~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++||+++ .|++++++.+.+.
T Consensus 134 ~tSA~tg----------~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 134 PTSATEG----------RGIERLKDAIRKA 153 (591)
T ss_pred EEECCCC----------CCHHHHHHHHHHH
Confidence 9999999 9999999999774
No 239
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=1.6e-14 Score=147.36 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhhh--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHADY-- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~f-- 121 (463)
...|+++|.+|+|||||+|+|++.... .....+.|.+.....+.+.+ ..+.++||||..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~----------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp 260 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY----------------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP 260 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee----------------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCC
Confidence 368999999999999999999764111 01112344444433444443 37899999997331
Q ss_pred ------HHHHHhhcccCCEEEEEEeCCCCCcHHH----HHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 122 ------IKNMISGASQMDGAIVVVAASEGQMPQT----REHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 122 ------~~~~~~~~~~aD~ailVVda~~g~~~qt----~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
...+...+..||++++|+|+++...... .+.+..+...++| +++|+||+|+.+... .. +.. .
T Consensus 261 ~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~-~~----~~~--~ 332 (426)
T PRK11058 261 HDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFE-PR----IDR--D 332 (426)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchh-HH----HHH--H
Confidence 2234556788999999999988653222 2223333334577 889999999974311 11 110 1
Q ss_pred HcCCCCCCCc-EEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 192 AYGYDGDNTP-FVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 192 ~~g~~~~~~p-vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
..+ .| ++++||+++ .|+++|++.|...+.
T Consensus 333 ~~~-----~~~~v~ISAktG----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EEN-----KPIRVWLSAQTG----------AGIPLLFQALTERLS 362 (426)
T ss_pred hcC-----CCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 112 33 588999999 999999999988664
No 240
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.59 E-value=1.3e-14 Score=131.14 Aligned_cols=158 Identities=22% Similarity=0.164 Sum_probs=111.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..+...+|+++|..+||||||+++|...... . . ..|.......+...+..+.++|.+|+..
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~------------~---~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS------------E---T----IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE------------E---E----EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhcccc------------c---c----CcccccccceeeeCcEEEEEEecccccc
Confidence 3356899999999999999999999642000 0 0 1122222334556788999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
+...+...+..+|++|+|||+++.. ..+.++.+..+.. .++| ++|++||+|+.+....+ ++.+.+.-..+
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~~~----~i~~~l~l~~l 145 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMSEE----EIKEYLGLEKL 145 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSSTHH----HHHHHTTGGGT
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcchhh----HHHhhhhhhhc
Confidence 8888888888999999999998643 3555555544332 2566 88999999997533222 33333332223
Q ss_pred C-CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 196 D-GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 196 ~-~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
. ...+.++.+||.+| .|+.+.+++|.+
T Consensus 146 ~~~~~~~v~~~sa~~g----------~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 146 KNKRPWSVFSCSAKTG----------EGVDEGLEWLIE 173 (175)
T ss_dssp TSSSCEEEEEEBTTTT----------BTHHHHHHHHHH
T ss_pred ccCCceEEEeeeccCC----------cCHHHHHHHHHh
Confidence 2 45578899999999 999999999875
No 241
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=2.6e-14 Score=134.18 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|+++|..|+|||||++++....... . ..+...+.........+......+.++||||++.+....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-----------~--~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-----------H--AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-----------c--CcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhH
Confidence 379999999999999999996421100 0 000011111112223333345678999999998554332
Q ss_pred Hhhcc-cCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 126 ISGAS-QMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 126 ~~~~~-~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.+. .+|++++|+|+++... ....+.+..+.. .++| +|+|.||+|+.+..... .++..++....+
T Consensus 68 --~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~--~~~~~~~a~~~~----- 137 (221)
T cd04148 68 --CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVS--VQEGRACAVVFD----- 137 (221)
T ss_pred --HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceec--HHHHHHHHHHcC-----
Confidence 344 8999999999987532 222333333333 3567 89999999997432211 122233333332
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 138 ~~~~e~SA~~~----------~gv~~l~~~l~~~~ 162 (221)
T cd04148 138 CKFIETSAGLQ----------HNVDELLEGIVRQI 162 (221)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999998755
No 242
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=3.2e-14 Score=144.44 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=99.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHAD--- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~--- 120 (463)
...|+++|.++||||||+++|++.....+.. ...|.......+... +..+.++|+||...
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~y----------------pfTTl~PnlG~v~~~~~~~~~laD~PGliega~ 221 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANY----------------HFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS 221 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccC----------------CcceeceEEEEEEEeCCceEEEEECCCCccccc
Confidence 3489999999999999999998653221111 134444444444444 67899999999632
Q ss_pred ----hHHHHHhhcccCCEEEEEEeCCCC----CcHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHH
Q psy3124 121 ----YIKNMISGASQMDGAIVVVAASEG----QMPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVR 187 (463)
Q Consensus 121 ----f~~~~~~~~~~aD~ailVVda~~g----~~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~ 187 (463)
.....++.+..+|++++|||++.. ...........+.. .+.| ++||+||+|+.... +.+.
T Consensus 222 ~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~------e~l~ 294 (424)
T PRK12297 222 EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAE------ENLE 294 (424)
T ss_pred ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCH------HHHH
Confidence 233445566779999999999743 11222222222222 3566 78999999985321 1222
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++.+.++ .+++++||+++ .++++|++.|...+.
T Consensus 295 ~l~~~l~-----~~i~~iSA~tg----------eGI~eL~~~L~~~l~ 327 (424)
T PRK12297 295 EFKEKLG-----PKVFPISALTG----------QGLDELLYAVAELLE 327 (424)
T ss_pred HHHHHhC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 2333332 57999999999 999999999877553
No 243
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=4e-14 Score=131.92 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec---CCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---NTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtPGh~~f 121 (463)
..+|+++|..++|||||+++|++.... ......+..+.....+.. ....+.++||||++.|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~----------------~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFA----------------EVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH
Confidence 478999999999999999999753110 000112222222222222 2356889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH-c--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ-I--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~-l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
.......+..+|++++|+|.++... ....+.+..... . ..+++++|.||+|+.+.... ..++...+.+..+
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--- 140 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--- 140 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC---
Confidence 8887788899999999999987432 112222222222 1 22347889999999743211 1123334444433
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++.+||+++ .+++++++.|...+
T Consensus 141 --~~~~e~Sak~g----------~~v~e~f~~l~~~~ 165 (211)
T cd04111 141 --MKYIETSARTG----------DNVEEAFELLTQEI 165 (211)
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 89999999887644
No 244
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.57 E-value=2e-14 Score=118.36 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=75.7
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEEEEEeceEE
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTVTMTLLYKM 402 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v~~~~~~p~ 402 (463)
.+++|+|+|.||+++ .||..||++.+|+++.+++|+|... ..++++|++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLNHP-----GQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred cccEEEEEEEEECCC-----CcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCee
Confidence 468999999999974 6999999999999999999999832 11357899999999999999999
Q ss_pred eeccC------CeEEEEeCCceEEEEEE
Q psy3124 403 YLSKG------QTFTIRENNKLVATGIV 424 (463)
Q Consensus 403 ~~~~~------~rfilr~~~~tig~G~V 424 (463)
|++++ +||+|||+|.|+|+|.|
T Consensus 77 ~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99987 89999999999999986
No 245
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=4.3e-14 Score=122.37 Aligned_cols=148 Identities=20% Similarity=0.222 Sum_probs=98.6
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCce-EEeeEEEEe--cCCeeEEEEeCCChhhhHHHHH
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGIT-INIAHVEYS--TNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~--~~~~~i~liDtPGh~~f~~~~~ 126 (463)
++|++++|||||+++|.+.... ..+. ..| .+.....+. .....+.++|+||+.++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~---------------~~~~--~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV---------------PEEY--ETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC---------------Cccc--ccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 5899999999999999764221 0000 111 222222222 2356789999999999988888
Q ss_pred hhcccCCEEEEEEeCCCCCcHHHHHH-----HHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQTREH-----LLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~qt~e~-----l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
..+..+|++++|+|+..+...+.... +......+.| +++++||+|+.+....+... ........ ...|
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~--~~~~~~~~----~~~~ 136 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE--LAEQLAKE----LGVP 136 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH--HHHHHHhh----cCCc
Confidence 88899999999999998655444332 2333445667 89999999998543322211 11111111 2478
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
++++|+..+ .++.+++++|.
T Consensus 137 ~~~~s~~~~----------~~i~~~~~~l~ 156 (157)
T cd00882 137 YFETSAKTG----------ENVEELFEELA 156 (157)
T ss_pred EEEEecCCC----------CChHHHHHHHh
Confidence 999999998 89999998874
No 246
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.57 E-value=3.3e-14 Score=117.69 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=77.7
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEEEEEeceEE
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTVTMTLLYKM 402 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v~~~~~~p~ 402 (463)
.+++|+|+|.|++++ .||..||++.+|+++..++|+|... ..++++|++||.|.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNVD-----KPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeE
Confidence 468999999999874 6899999999999999999998721 11357899999999999999999
Q ss_pred eeccC------CeEEEEeCCceEEEEEEeee
Q psy3124 403 YLSKG------QTFTIRENNKLVATGIVTKV 427 (463)
Q Consensus 403 ~~~~~------~rfilr~~~~tig~G~V~~~ 427 (463)
|++++ +||+||++|.|+|+|.|+++
T Consensus 77 ~~e~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EEEEcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99987 79999999999999999874
No 247
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.56 E-value=6.7e-14 Score=127.26 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe---eEEEEecCCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI---AHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~---~~~~~~~~~~~i~liDtPGh~ 119 (463)
+...+|+++|..++|||||+.++...... .+. ..|+.. ....+......+.|+||+|.+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~----------------~~~--~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP----------------ENY--VPTVFENYTASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCC----------------Ccc--CCceeeeeEEEEEECCEEEEEEEEECCCch
Confidence 45689999999999999999999653110 000 111111 112222334568899999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHH--cCCCeEEEEEeccCcccH-HHH---------HHHHHH
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQ--IGIDNVVVYVNKADLVDR-EIM---------ELVELE 185 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~--l~ip~iivvvNKiD~~~~-~~~---------~~i~~~ 185 (463)
+|.......++.+|++|+|.|.++...-+. ...+..+.. -+.| +|+|.||+|+.+. ... ....++
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 998777778899999999999987543222 122222222 2456 8899999998631 100 011245
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCcc-HHHHHHHhhh
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPS-IHRLLDALDK 232 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~-i~~Ll~~L~~ 232 (463)
..++.+.++. ++++.+||+++ .+ ++++++.+..
T Consensus 144 ~~~~a~~~~~----~~~~E~SAk~~----------~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIGA----ATYIECSALQS----------ENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcCC----CEEEECCcCCC----------CCCHHHHHHHHHH
Confidence 5566666552 48999999999 87 9998887654
No 248
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.56 E-value=7.5e-14 Score=129.24 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe--cCCeeEEEEeCCChhhhHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS--TNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPGh~~f~~~ 124 (463)
+|+++|+.|+|||||+.+|...... ... ..++.......+. ..+..+.++|+|||.+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~------------~t~-----~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR------------STV-----TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC------------Ccc-----CcEeecceEEEeecCCCCceEEEEECCCCHHHHHH
Confidence 6899999999999999999754110 000 0011111111121 24577999999999999888
Q ss_pred HHhhcccC-CEEEEEEeCCCCC--cHHHHHHHHHH----HH--cCCCeEEEEEeccCccc
Q psy3124 125 MISGASQM-DGAIVVVAASEGQ--MPQTREHLLLS----KQ--IGIDNVVVYVNKADLVD 175 (463)
Q Consensus 125 ~~~~~~~a-D~ailVVda~~g~--~~qt~e~l~~~----~~--l~ip~iivvvNKiD~~~ 175 (463)
+...+..+ +++|+|+|+.... ...+.+++..+ .. -++| ++++.||+|+..
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~ 123 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFT 123 (203)
T ss_pred HHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcc
Confidence 88888888 9999999998752 23344444322 11 3677 889999999874
No 249
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.55 E-value=1.7e-13 Score=129.55 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh------
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD------ 120 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~------ 120 (463)
+|+++|.+++|||||+++|++.....+.. .+.|.+.....+...+..+.++||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~----------------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY----------------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC----------------CCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 68999999999999999998763222111 13344444444556778899999999753
Q ss_pred -hHHHHHhhcccCCEEEEEEeCCCC
Q psy3124 121 -YIKNMISGASQMDGAIVVVAASEG 144 (463)
Q Consensus 121 -f~~~~~~~~~~aD~ailVVda~~g 144 (463)
+...+...++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 334566778899999999998753
No 250
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=1.6e-13 Score=129.16 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=101.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...+|+++|..++|||+|+.++....... +....+..+. ....+......+.|+||+|.++|.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~----------------~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE----------------TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC----------------CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH
Confidence 46799999999999999999997531110 0000011111 112222334568899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHH--cCCCeEEEEEeccCcccH-HH---------HHHHHHHHHH
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQ--IGIDNVVVYVNKADLVDR-EI---------MELVELEVRD 188 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~--l~ip~iivvvNKiD~~~~-~~---------~~~i~~~i~~ 188 (463)
......+..+|++|||.|.++...-+. ..++..+.. -++| +|+|.||+|+.+. .. .....++..+
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 877778899999999999987543222 122233332 2566 8899999998531 00 0111235566
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCc-cHHHHHHHhhh
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEP-SIHRLLDALDK 232 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~-~i~~Ll~~L~~ 232 (463)
+.+.+++ .+++.+||+++ . +++++++.+..
T Consensus 155 ~a~~~~~----~~~~EtSAktg----------~~~V~e~F~~~~~ 185 (232)
T cd04174 155 LAKQLGA----EVYLECSAFTS----------EKSIHSIFRSASL 185 (232)
T ss_pred HHHHcCC----CEEEEccCCcC----------CcCHHHHHHHHHH
Confidence 6666552 26899999998 7 68888887754
No 251
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.2e-13 Score=135.02 Aligned_cols=237 Identities=19% Similarity=0.210 Sum_probs=163.5
Q ss_pred hcccccccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe
Q psy3124 29 KYNCYSDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR 108 (463)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 108 (463)
+-.+.+.........|.+.++++|++|.|||||+..|..-... ..-.+....+|+ .....+
T Consensus 53 klhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk-------------~ti~~i~GPiTv------vsgK~R 113 (1077)
T COG5192 53 KLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK-------------QTIDEIRGPITV------VSGKTR 113 (1077)
T ss_pred ccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHH-------------hhhhccCCceEE------eeccee
Confidence 3345555555666677888899999999999999999654221 111122223444 234678
Q ss_pred eEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHH
Q psy3124 109 HYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVR 187 (463)
Q Consensus 109 ~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~ 187 (463)
+++|+.||. -+..|+.-+..||.++|+||++-|....|.|.|.++...|.|+++-|+|..|+. ++..+..+++.+.
T Consensus 114 RiTflEcp~---Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlk 190 (1077)
T COG5192 114 RITFLECPS---DLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLK 190 (1077)
T ss_pred EEEEEeChH---HHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHh
Confidence 999999993 367788888999999999999999999999999999999999999999999998 4555666666555
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEe---------cCCC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIG---------VPGR 258 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~---------~~~~ 258 (463)
..+..--+++ ..+|.+|.... ..|....+..|-.+|.-.--.|.+..+..+.+..+++-. -+.+
T Consensus 191 hRfWtEiyqG--aKlFylsgV~n-----GRYpDreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv 263 (1077)
T COG5192 191 HRFWTEIYQG--AKLFYLSGVEN-----GRYPDREILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKV 263 (1077)
T ss_pred hhHHHHHcCC--ceEEEeccccc-----CCCCCHHHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhcccc
Confidence 4443322333 44778886653 456556677777766553344555555555555444332 2223
Q ss_pred c--eEEEEEEec-ccccCCCEEEEecCCceeeEEEEEEe
Q psy3124 259 G--SVCIGTIKQ-GTIKRNDEAELLGFNSKFTCTISEIQ 294 (463)
Q Consensus 259 G--~vv~G~v~~-G~l~~gd~v~i~~~~~~~~~~V~sI~ 294 (463)
| ..++|.+.. |-.+...+|.|.+.|.+..+.|..+.
T Consensus 264 ~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~ 302 (1077)
T COG5192 264 GRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLI 302 (1077)
T ss_pred CceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcC
Confidence 3 457899998 77788888988887776555555543
No 252
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=1.2e-13 Score=125.30 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.+|+++|..++|||||+.++.+.... .+....+..+. ....+......+.++||||+++|...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP----------------ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC----------------CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhc
Confidence 57999999999999999999754111 00000111111 11222333456789999999999776
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHH--cCCCeEEEEEeccCcccH-HHH---------HHHHHHHHHHH
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQ--IGIDNVVVYVNKADLVDR-EIM---------ELVELEVRDVL 190 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~--l~ip~iivvvNKiD~~~~-~~~---------~~i~~~i~~~l 190 (463)
.....+.+|++|+|.|.++...-+. ..++..+.. -.+| +++|.||+|+.+. ... ....++..++.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 6777889999999999987543222 223333332 2556 8899999998631 100 01123455555
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCcc-HHHHHHHhhh
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPS-IHRLLDALDK 232 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~-i~~Ll~~L~~ 232 (463)
++.+. .+++.+||+++ .+ ++++++.+..
T Consensus 145 ~~~~~----~~~~E~SA~~~----------~~~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGA----EIYLECSAFTS----------EKSVRDIFHVATM 173 (178)
T ss_pred HHhCC----CEEEECccCcC----------CcCHHHHHHHHHH
Confidence 55542 47999999998 74 9998887765
No 253
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.53 E-value=2.7e-13 Score=124.98 Aligned_cols=162 Identities=18% Similarity=0.228 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhc-CccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHA---- 119 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~---- 119 (463)
++|+++|.+|+|||||+|+|++..... |... .. ....|.... .+.. ....+.++||||..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~------~~------~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~ 67 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAP------TG------VVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF 67 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccc------cC------ccccccCce--eeecCCCCCceEEeCCCCCcccC
Confidence 689999999999999999998742111 1100 00 000111111 1211 13468999999963
Q ss_pred ---hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH-------------HHHHHHH
Q psy3124 120 ---DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR-------------EIMELVE 183 (463)
Q Consensus 120 ---~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~-------------~~~~~i~ 183 (463)
+|+..+ ++..+|.+++|.|. .........+..+...+.| +++|+||+|+..+ ..++++.
T Consensus 68 ~~~~~l~~~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 68 PPDDYLEEM--KFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred CHHHHHHHh--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCC-EEEEEecccchhhhhhccccccccHHHHHHHHH
Confidence 444432 35678988887553 4455556667777778877 8999999999621 1233444
Q ss_pred HHHHHHHHHcCCCCCCCcEEEccch--hhccCCCCCCCCccHHHHHHHhhhcCCCCC
Q psy3124 184 LEVRDVLTAYGYDGDNTPFVFGSAL--LALQGDSSELGEPSIHRLLDALDKHIPNPV 238 (463)
Q Consensus 184 ~~i~~~l~~~g~~~~~~pvi~~Sa~--~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~ 238 (463)
+.+.+.+...+. ...||+.+|+. .+ .++..|.+++...+|...
T Consensus 143 ~~~~~~~~~~~~--~~p~v~~vS~~~~~~----------~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 143 DNCLENLQEAGV--SEPPVFLVSNFDPSD----------YDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHHHHHcCC--CCCCEEEEeCCChhh----------cChHHHHHHHHHHhhHHH
Confidence 445555554443 23578999988 34 688899999988776543
No 254
>KOG0084|consensus
Probab=99.53 E-value=2.2e-13 Score=120.24 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=110.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--CeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--TRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPGh~~f 121 (463)
..++|.++|..|+|||-|+-++.. +...++....+-++.....++.+ .-++.+|||.|+++|
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF 71 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 71 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHH
Confidence 468999999999999999999853 33444455555566555555554 456889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
...+.+..+.|+++|+|.|.+.-..-.. ...+.-+.. -++| .++|.||+|+.+...... ++.+++...++
T Consensus 72 rtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v~~--~~a~~fa~~~~--- 145 (205)
T KOG0084|consen 72 RTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVVST--EEAQEFADELG--- 145 (205)
T ss_pred hhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheecCH--HHHHHHHHhcC---
Confidence 9999999999999999999987443222 222333333 3567 568999999985433322 34455555554
Q ss_pred CCCc-EEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 198 DNTP-FVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 198 ~~~p-vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+| ++++||+.+ .++++.+..|..
T Consensus 146 --~~~f~ETSAK~~----------~NVe~~F~~la~ 169 (205)
T KOG0084|consen 146 --IPIFLETSAKDS----------TNVEDAFLTLAK 169 (205)
T ss_pred --CcceeecccCCc----------cCHHHHHHHHHH
Confidence 55 999999998 677766666554
No 255
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.53 E-value=8.5e-14 Score=114.16 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=76.1
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC----------CCCccccCCCEEEEEEEeceEEee
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG----------EDDGMLMPGEHGTVTMTLLYKMYL 404 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------~~~~~l~~g~~~~v~~~~~~p~~~ 404 (463)
++++|+|++.+++++ .||..||.+.+|+++.+++|++..+. .+++.|++||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~~-----~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYVLDHP-----EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEE
Confidence 468999999999874 69999999999999999999998543 135789999999999999999999
Q ss_pred c------cCCeEEEEeCCceEEEEEE
Q psy3124 405 S------KGQTFTIRENNKLVATGIV 424 (463)
Q Consensus 405 ~------~~~rfilr~~~~tig~G~V 424 (463)
+ .++||+||++++|+|+|.|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9 8899999999999999986
No 256
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.52 E-value=1.8e-13 Score=126.27 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=97.1
Q ss_pred EcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhc--CceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhh
Q psy3124 51 IGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKAR--GITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISG 128 (463)
Q Consensus 51 ~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~ 128 (463)
+|..++|||||+.++..... ..+... |.+.....+.+......+.|+||||+++|...+...
T Consensus 1 vG~~~vGKTsLi~r~~~~~f----------------~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF----------------EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 59999999999999864210 011111 222222222233334678899999999998888888
Q ss_pred cccCCEEEEEEeCCCCCcHH-HHHHHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 129 ASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 129 ~~~aD~ailVVda~~g~~~q-t~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
++.+|++|+|+|++....-+ ....+..+.. -++| +++|.||+|+...... .+++ .+.+. ..++++.+
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~---~~~~-~~~~~-----~~~~~~e~ 134 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVK---AKSI-TFHRK-----KNLQYYDI 134 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCC---HHHH-HHHHH-----cCCEEEEE
Confidence 89999999999999864322 2222232333 3677 8899999998632111 1111 22222 23789999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
||+++ .++.+++++|...+
T Consensus 135 SAk~~----------~~v~~~F~~l~~~i 153 (200)
T smart00176 135 SAKSN----------YNFEKPFLWLARKL 153 (200)
T ss_pred eCCCC----------CCHHHHHHHHHHHH
Confidence 99999 89999999987644
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.1e-13 Score=116.29 Aligned_cols=107 Identities=26% Similarity=0.303 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh------
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD------ 120 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~------ 120 (463)
+|+++|.+|+|||||+++|++.... ......+.|.......+...+..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~---------------~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA---------------KVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS---------------EESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccc---------------cccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 5899999999999999999863110 0011123344333345566888899999999532
Q ss_pred ---hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEec
Q psy3124 121 ---YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNK 170 (463)
Q Consensus 121 ---f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNK 170 (463)
........+..+|++++|+|+.+....+..+.+..++ .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 3344566668899999999988744444555556565 5555 8999998
No 258
>KOG1423|consensus
Probab=99.50 E-value=2.3e-12 Score=121.04 Aligned_cols=168 Identities=23% Similarity=0.252 Sum_probs=103.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh---
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH--- 118 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh--- 118 (463)
+...++|+++|.+|+|||||.|.+.+...- +..+.-..|-.-....+......+.|.||||.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~---------------~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVS---------------AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSK 133 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccc---------------cccccccceeeeeeEEEecCceEEEEecCCccccc
Confidence 355789999999999999999999764211 11111123333334456677889999999992
Q ss_pred ---hh------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH-cCCCeEEEEEeccCcccHHHH-HHH-----
Q psy3124 119 ---AD------YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ-IGIDNVVVYVNKADLVDREIM-ELV----- 182 (463)
Q Consensus 119 ---~~------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~-~~i----- 182 (463)
.. ++.+...++..||.+++|+|+.+.-....-..|..+.. ..+| -|+|+||+|...+.+. -..
T Consensus 134 ~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ip-s~lvmnkid~~k~k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 134 KMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIP-SILVMNKIDKLKQKRLLLNLKDLLT 212 (379)
T ss_pred chhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCC-ceeeccchhcchhhhHHhhhHHhcc
Confidence 22 23344567788999999999985221111222222222 4677 4589999999854321 111
Q ss_pred -------HHHHHHHHHHc----------CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 183 -------ELEVRDVLTAY----------GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 183 -------~~~i~~~l~~~----------g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+-++++.+... |+. .--.+|++||++| +|+++|-++|....|+
T Consensus 213 ~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws-hfe~vF~vSaL~G----------~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVPSDEKWRTICGWS-HFERVFMVSALYG----------EGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccccchhhhhHHHHhccCCcccccccccCcc-cceeEEEEecccc----------cCHHHHHHHHHhcCCC
Confidence 11222211110 000 0012899999999 9999999999886543
No 259
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.49 E-value=4.7e-13 Score=118.88 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|+.++|||||+.+|.+..... ......|.........++.....+.++|++|+++|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--------------NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--------------SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--------------cccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999997541110 0111112333333334444445688999999999987776
Q ss_pred hhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH-cC-CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEE
Q psy3124 127 SGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ-IG-IDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFV 203 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~-l~-ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi 203 (463)
..+..+|++|+|.|.++... ......+..... .. -++++++.||.|+.+...+. .++.+++.+.++ .|++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~~~~~-----~~~~ 139 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS--VEEAQEFAKELG-----VPYF 139 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC--HHHHHHHHHHTT-----SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccch--hhHHHHHHHHhC-----CEEE
Confidence 77889999999999987322 122222222222 22 24599999999998532221 234555565543 7899
Q ss_pred EccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 204 FGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 204 ~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+||+++ .++.+++..+.+
T Consensus 140 e~Sa~~~----------~~v~~~f~~~i~ 158 (162)
T PF00071_consen 140 EVSAKNG----------ENVKEIFQELIR 158 (162)
T ss_dssp EEBTTTT----------TTHHHHHHHHHH
T ss_pred EEECCCC----------CCHHHHHHHHHH
Confidence 9999999 899998887765
No 260
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.49 E-value=1.6e-12 Score=121.66 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.+|+++|..++|||||+.++...... ++....+..+. ..+.+......+.|+||+|++.|...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----------------~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP----------------GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999753110 00000111111 11222223456789999999999887
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHH-HHHHHH-HHHH--cCCCeEEEEEeccCcccH-HHHHH---------HHHHHHHHH
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQ-TREHLL-LSKQ--IGIDNVVVYVNKADLVDR-EIMEL---------VELEVRDVL 190 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~q-t~e~l~-~~~~--l~ip~iivvvNKiD~~~~-~~~~~---------i~~~i~~~l 190 (463)
....+..+|++|+|+|.++...-+ ..+.|. .... -++| +|+|.||+|+.+. ..... ..++...+.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 777889999999999998753221 112221 1111 3567 8899999999632 11111 112344444
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCc-cHHHHHHHhhh
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEP-SIHRLLDALDK 232 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~-~i~~Ll~~L~~ 232 (463)
+.++ .++++.+||+++ . ++.++++....
T Consensus 145 k~~~----~~~y~E~SAk~~----------~~~V~~~F~~~~~ 173 (222)
T cd04173 145 KQVG----AVSYVECSSRSS----------ERSVRDVFHVATV 173 (222)
T ss_pred HHcC----CCEEEEcCCCcC----------CcCHHHHHHHHHH
Confidence 4544 258999999987 6 48888876655
No 261
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.48 E-value=5.2e-13 Score=121.97 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEE-eeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITIN-IAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.+|+++|+.|+|||||+++|...... .+....+... .....+......+.++|+||+++|...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP----------------EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc
Confidence 57999999999999999999632110 0000011011 111222222345789999999887644
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHH-H-HHHHHHHH--cCCCeEEEEEeccCcccHH---------HHHHHHHHHHHHHH
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQT-R-EHLLLSKQ--IGIDNVVVYVNKADLVDRE---------IMELVELEVRDVLT 191 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt-~-e~l~~~~~--l~ip~iivvvNKiD~~~~~---------~~~~i~~~i~~~l~ 191 (463)
....++.+|++++|.|.+.....+. . .++..+.. -.+| +++|.||+|+.+.. ++.. .++...+.+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHH
Confidence 4345678999999999876432221 1 12333322 2566 89999999985311 0100 123334444
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.++. .+++.+||+++ .+++++++.+...
T Consensus 144 ~~~~----~~~~e~Sa~~~----------~~v~~~f~~l~~~ 171 (187)
T cd04129 144 EIGA----KKYMECSALTG----------EGVDDVFEAATRA 171 (187)
T ss_pred HhCC----cEEEEccCCCC----------CCHHHHHHHHHHH
Confidence 4442 57999999999 9999999998763
No 262
>PRK09866 hypothetical protein; Provisional
Probab=99.48 E-value=1.4e-12 Score=134.87 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=84.0
Q ss_pred CeeEEEEeCCChhh-----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC--CCeEEEEEeccCcccHH--
Q psy3124 107 TRHYAHTDCPGHAD-----YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG--IDNVVVYVNKADLVDRE-- 177 (463)
Q Consensus 107 ~~~i~liDtPGh~~-----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~--ip~iivvvNKiD~~~~~-- 177 (463)
...++|+||||... +.+.|...+..+|.+++|||+..+.....++.+..++..+ .| +++|+||+|+.+.+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 36789999999532 4556778899999999999999877777777777777777 36 88999999997422
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 178 IMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 178 ~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..+.+.+.+...+...++. ...++|+||+.+ .+++.|++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~--f~eIfPVSAlkG----------~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCIT--PQQIFPVSSMWG----------YLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCC--CceEEEEeCCCC----------CCHHHHHHHHHh
Confidence 1334444444444433332 345899999999 999999999987
No 263
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.48 E-value=6e-12 Score=121.77 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=98.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADYI 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f~ 122 (463)
.++|+++|+.|+|||||+++|.+........ ..+....+....+++......++.++ .+++++||||..++.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~------~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDY------PPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccC------CCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 5799999999999999999997542111100 00101112233333444444454444 468999999954432
Q ss_pred ---------------------HHHHh-----hc--ccCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 123 ---------------------KNMIS-----GA--SQMDGAIVVVAASE-GQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 123 ---------------------~~~~~-----~~--~~aD~ailVVda~~-g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
.+... .+ ..+|++++++++.. ++.....+.+..+.. ++| +|+|+||+|+
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~ 155 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKADT 155 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCCc
Confidence 22111 11 14788999999874 676777777777764 777 8899999999
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 174 VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 174 ~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
..++.....++.+++.++..+ +++++...
T Consensus 156 l~~~e~~~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 156 LTPEELKEFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcC-----CceECCCC
Confidence 876666777888888888776 55666543
No 264
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.47 E-value=6.8e-13 Score=117.86 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|+.++|||||+.++....... ...+. .+. . ...+.+......+.++||+|.+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-----------~~~~~---~~~-~-~~~i~~~~~~~~l~i~D~~g~~~~---- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-----------LESPE---GGR-F-KKEVLVDGQSHLLLIRDEGGAPDA---- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC-----------CCCCC---ccc-e-EEEEEECCEEEEEEEEECCCCCch----
Confidence 479999999999999999875431100 00000 011 0 111222222356889999999763
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
.....+|++++|.|.++...-+. ..++..+.. .++| +++|.||+|+..........++..++.++. ..+
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~~~~~~~~~~~~----~~~ 134 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVIDDARARQLCADM----KRC 134 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccCHHHHHHHHHHh----CCC
Confidence 23467999999999987554333 333333332 2456 889999999852111111112333333332 137
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++.+||+++ .+++++++.+.+
T Consensus 135 ~~~e~SAk~~----------~~i~~~f~~~~~ 156 (158)
T cd04103 135 SYYETCATYG----------LNVERVFQEAAQ 156 (158)
T ss_pred cEEEEecCCC----------CCHHHHHHHHHh
Confidence 8999999999 999999988764
No 265
>COG2262 HflX GTPases [General function prediction only]
Probab=99.47 E-value=4.5e-13 Score=131.32 Aligned_cols=155 Identities=21% Similarity=0.183 Sum_probs=103.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~ 120 (463)
......|+++|..|||||||+|+|++........ + =.|.+.....+... ++.+.+-||-|..+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~-------L---------FATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ-------L---------FATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeecccc-------c---------cccccCceeEEEeCCCceEEEecCccCcc
Confidence 3467899999999999999999998542111110 1 12444444444444 68899999999654
Q ss_pred h--------HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 121 Y--------IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 121 f--------~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
- .+.++.....||.+++||||+++.. .+.......+..+ .+| +|+|+||+|+++... . ..
T Consensus 253 ~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~---~----~~ 324 (411)
T COG2262 253 DLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEE---I----LA 324 (411)
T ss_pred cCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchh---h----hh
Confidence 2 4556667788999999999998632 2222223344443 456 889999999885432 1 11
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+... . . +.+++||+++ .|++.|.+.|...++
T Consensus 325 ~~~~~-~---~-~~v~iSA~~~----------~gl~~L~~~i~~~l~ 356 (411)
T COG2262 325 ELERG-S---P-NPVFISAKTG----------EGLDLLRERIIELLS 356 (411)
T ss_pred hhhhc-C---C-CeEEEEeccC----------cCHHHHHHHHHHHhh
Confidence 11111 1 1 4789999999 999999999988665
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.46 E-value=4.5e-13 Score=123.43 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY---- 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f---- 121 (463)
++|+++|.+|+|||||+|+|++...- .......+.|.+.....+.+.++.+++|||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~--------------~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVF--------------ESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcc--------------ccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 57999999999999999999864110 001113366666666666778899999999996543
Q ss_pred ---HHHHHh----hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C---CCeEEEEEeccCcccHHHHHH----HHHHH
Q psy3124 122 ---IKNMIS----GASQMDGAIVVVAASEGQMPQTREHLLLSKQI-G---IDNVVVYVNKADLVDREIMEL----VELEV 186 (463)
Q Consensus 122 ---~~~~~~----~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l-~---ip~iivvvNKiD~~~~~~~~~----i~~~i 186 (463)
...+.. ....+|++++|+++.+ ......+.+..+... | .+++++++|+.|......+++ ....+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 222322 2356899999999987 666666666655543 3 356889999999874333333 23566
Q ss_pred HHHHHHcCCCCCCCcEEEcc-----chhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 187 RDVLTAYGYDGDNTPFVFGS-----ALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~S-----a~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+.+++.++- . ++..+ +..+ ..+.+|++.+...++.
T Consensus 146 ~~l~~~c~~---r--~~~f~~~~~~~~~~----------~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 146 KRLLEKCGG---R--YVAFNNKAKGEEQE----------QQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhCC---e--EEEEeCCCCcchhH----------HHHHHHHHHHHHHHHh
Confidence 777777652 1 22222 3333 7889999999886553
No 267
>KOG0078|consensus
Probab=99.46 E-value=1.6e-12 Score=116.55 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|.+++|||.|+-++......... -..-|+......+........+.+|||.|+++|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--------------~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--------------ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCc--------------cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH
Confidence 4689999999999999999998654221111 01112322223333333345677999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.+.++++.|++++||+|...... ...+..+..... -+++ .++|.||+|+.++.. .-.+.-+++..++|
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R~--V~~e~ge~lA~e~G----- 148 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKRQ--VSKERGEALAREYG----- 148 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeecccccccccc--ccHHHHHHHHHHhC-----
Confidence 99999999999999999987332 222222222222 2677 779999999975321 12234455556666
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++.+||+++ .++++.+-.|..
T Consensus 149 ~~F~EtSAk~~----------~NI~eaF~~La~ 171 (207)
T KOG0078|consen 149 IKFFETSAKTN----------FNIEEAFLSLAR 171 (207)
T ss_pred CeEEEccccCC----------CCHHHHHHHHHH
Confidence 67999999999 788777666655
No 268
>KOG0394|consensus
Probab=99.46 E-value=7.3e-13 Score=115.40 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=105.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe--eEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR--HYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPGh~~ 120 (463)
+..++|.++|.+|+|||+|++++.......- -...|..+.....+..+++ .+.|+||.|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~q----------------ykaTIgadFltKev~Vd~~~vtlQiWDTAGQER 70 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQ----------------YKATIGADFLTKEVQVDDRSVTLQIWDTAGQER 70 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHH----------------hccccchhheeeEEEEcCeEEEEEEEecccHHH
Confidence 4578999999999999999999965422110 0111222222223333333 456999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH-----HHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHL-----LLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l-----~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
|-.--....+.||.++||.|.+........+.| .++.- ...| +||+.||+|+........-.+..+++.+.
T Consensus 71 FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~VS~~~Aq~WC~s 149 (210)
T KOG0394|consen 71 FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQVSEKKAQTWCKS 149 (210)
T ss_pred hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccceeeHHHHHHHHHh
Confidence 988877788999999999998875444443333 33322 2356 89999999997422122233455566655
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
-| ++|++.+||+.+ .++++.++.+..
T Consensus 150 ~g----nipyfEtSAK~~----------~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 150 KG----NIPYFETSAKEA----------TNVDEAFEEIAR 175 (210)
T ss_pred cC----CceeEEeccccc----------ccHHHHHHHHHH
Confidence 44 699999999998 777776665544
No 269
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=8.2e-13 Score=125.75 Aligned_cols=125 Identities=21% Similarity=0.228 Sum_probs=86.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY-- 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f-- 121 (463)
..+.|+++|++|+|||||++.|++...+....+|. |-.+....|+....+|++|||||.-|-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT----------------TK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT----------------TKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcc----------------ccceeEeeeecCCceEEEecCCcccCCCh
Confidence 45789999999999999999999987776665553 222223456666779999999996442
Q ss_pred ------HHHHHhhccc-CCEEEEEEeCCC--CCc--HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 122 ------IKNMISGASQ-MDGAIVVVAASE--GQM--PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 122 ------~~~~~~~~~~-aD~ailVVda~~--g~~--~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
-...+.+++. .+++++++|+++ |.. .|..-.-.+-..++.| +++|+||+|..+.+.++++...
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccchhHHHHHHHH
Confidence 2333455544 788999999986 333 3333332334445645 9999999999987776655433
No 270
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=2.9e-12 Score=119.73 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=98.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEE--ecCCeeEEEEeCCCh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY--STNTRHYAHTDCPGH 118 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~~i~liDtPGh 118 (463)
+.....+|+++|+.|+|||||++++...... .+....+..+.....+ ......+.++||||+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFE----------------KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCccceEEEEEEEEECCeEEEEEEEECCCc
Confidence 3445689999999999999999765432110 0001111222222222 334567889999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH-HHHH--HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHL-LLSK--QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l-~~~~--~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
++|..........+|++++|+|.++...-+....+ .... .-++| ++++.||+|+.+..... +...+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~~~----~~~~~~~~~~- 142 (215)
T PTZ00132 69 EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQVKA----RQITFHRKKN- 142 (215)
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccccCCH----HHHHHHHHcC-
Confidence 99877666677889999999999875543332222 1111 13566 78899999986432111 1122333322
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .++++.+..|...+
T Consensus 143 ----~~~~e~Sa~~~----------~~v~~~f~~ia~~l 167 (215)
T PTZ00132 143 ----LQYYDISAKSN----------YNFEKPFLWLARRL 167 (215)
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 56899999998 88888777776533
No 271
>KOG1489|consensus
Probab=99.44 E-value=1.4e-12 Score=123.19 Aligned_cols=154 Identities=25% Similarity=0.295 Sum_probs=96.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEE--eeEEEEecCCeeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITIN--IAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~--~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
|....|+++|.++||||||+++|+......+...|. |.. +....++ +...+++.|.||..+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFT----------------TL~P~iG~v~yd-df~q~tVADiPGiI~ 256 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT----------------TLRPHIGTVNYD-DFSQITVADIPGIIE 256 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCccccccee----------------eeccccceeecc-ccceeEeccCccccc
Confidence 456689999999999999999999887776665553 222 2223332 223399999999432
Q ss_pred -------hHHHHHhhcccCCEEEEEEeCCCCC---cHHHHHHH-HHH----HHcCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 121 -------YIKNMISGASQMDGAIVVVAASEGQ---MPQTREHL-LLS----KQIGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 121 -------f~~~~~~~~~~aD~ailVVda~~g~---~~qt~e~l-~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
.-...++-+..++..++|||.+.+. --|..+.| ..+ +.+.-++.+||+||+|+.+.+ +...++
T Consensus 257 GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~ 334 (366)
T KOG1489|consen 257 GAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSS 334 (366)
T ss_pred cccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHH
Confidence 1122233345689999999998762 12222211 112 223334477999999996322 111223
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+.+.| . +..|+++||+++ +++.+|++.|..
T Consensus 335 L~~~l---q----~~~V~pvsA~~~----------egl~~ll~~lr~ 364 (366)
T KOG1489|consen 335 LAKRL---Q----NPHVVPVSAKSG----------EGLEELLNGLRE 364 (366)
T ss_pred HHHHc---C----CCcEEEeeeccc----------cchHHHHHHHhh
Confidence 33322 1 123899999999 999999998865
No 272
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=122.03 Aligned_cols=169 Identities=20% Similarity=0.248 Sum_probs=113.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee-EEEEecCCeeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA-HVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~~~~i~liDtPGh~~ 120 (463)
.++++||.++|..|+|||||+|+|....... -..-|++.+.. +.....+...++|+||||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~----------------v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKE----------------VSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCce----------------eeecccCCCchhhHHhhccccceEEecCCCccc
Confidence 5678999999999999999999997321100 00001111111 111223557899999999766
Q ss_pred -------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CeEEEEEeccCcccHH-------------HH
Q psy3124 121 -------YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI-DNVVVYVNKADLVDRE-------------IM 179 (463)
Q Consensus 121 -------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~i-p~iivvvNKiD~~~~~-------------~~ 179 (463)
|.......+...|.+++++++.+.......+.++.....+. .+++++||.+|...+. ..
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 67777778888999999999998776666777766666665 6699999999987321 11
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 180 ELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 180 ~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
+.+.++....-+. +. +.-|++.+|+... .++++|+.++..++|...+
T Consensus 180 qfi~~k~~~~~~~--~q-~V~pV~~~~~r~~----------wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 180 QFIEEKAEALGRL--FQ-EVKPVVAVSGRLP----------WGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHHHHHHHHH--Hh-hcCCeEEeccccC----------ccHHHHHHHHHHhCccccc
Confidence 1122222221111 11 2468999998877 8999999999998885443
No 273
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=1.8e-12 Score=123.96 Aligned_cols=177 Identities=23% Similarity=0.258 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccc-----cc---------cCCChhhh---hcCceEEeeEE-------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITF-----DQ---------IDRAPEEK---ARGITINIAHV------- 101 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~-----~~---------~d~~~~e~---~~g~Ti~~~~~------- 101 (463)
..+++.|..|+||||++..+.......|+...... .. .+....+. +.+...+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 46899999999999999999877766664322110 00 00000000 10111100000
Q ss_pred --------EEecCCeeEEEEeCCChhhhH------HHHHhhccc--CCEEEEEEeCCCCCcHHHHHHHHHHH-----HcC
Q psy3124 102 --------EYSTNTRHYAHTDCPGHADYI------KNMISGASQ--MDGAIVVVAASEGQMPQTREHLLLSK-----QIG 160 (463)
Q Consensus 102 --------~~~~~~~~i~liDtPGh~~f~------~~~~~~~~~--aD~ailVVda~~g~~~qt~e~l~~~~-----~l~ 160 (463)
.+...+..+.++||||+.++. +.+...+.. ++++++|+|+..+..+.+.+....+. ..+
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~ 162 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG 162 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 011123479999999976642 223333333 89999999998877665544433322 568
Q ss_pred CCeEEEEEeccCcccHHHHHHHHHHHH------------------------HHHHHcCCCCCCCcEEEccchhhccCCCC
Q psy3124 161 IDNVVVYVNKADLVDREIMELVELEVR------------------------DVLTAYGYDGDNTPFVFGSALLALQGDSS 216 (463)
Q Consensus 161 ip~iivvvNKiD~~~~~~~~~i~~~i~------------------------~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~ 216 (463)
+| +++|+||+|+.+.+..+...+.+. +.+++++ ...+++++|++++
T Consensus 163 ~~-~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~------ 232 (253)
T PRK13768 163 LP-QIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTG------ 232 (253)
T ss_pred CC-EEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCC------
Confidence 88 789999999986544433333222 1233333 2368999999998
Q ss_pred CCCCccHHHHHHHhhhcCCC
Q psy3124 217 ELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 217 ~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.++++|++.|..+++.
T Consensus 233 ----~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 233 ----EGFDELYAAIQEVFCG 248 (253)
T ss_pred ----cCHHHHHHHHHHHcCC
Confidence 9999999999987754
No 274
>KOG0098|consensus
Probab=99.43 E-value=4e-12 Score=111.04 Aligned_cols=156 Identities=19% Similarity=0.139 Sum_probs=108.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--CeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--TRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPGh~~f 121 (463)
...++.++|..|+|||.|+.+.+....+. ..| ..+-++.....+..+ .-+++++||.||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~---------~hd-------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQP---------VHD-------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccc---------ccc-------ceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 35789999999999999999987542110 011 123334344444444 446789999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcCCCe--EEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQIGIDN--VVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~ip~--iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..-+.++.+.|-+||||.|.+.-.. .....+|.-++..+-+. ++++.||+|+.... +.-++|-+.+.++.|
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~EEGeaFA~ehg---- 142 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKEEGEAFAREHG---- 142 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc--cccHHHHHHHHHHcC----
Confidence 9999999999999999999886432 23333444555553232 66778999997443 233467777888877
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+++.+||+++ .++++.+.....
T Consensus 143 -LifmETSakt~----------~~VEEaF~nta~ 165 (216)
T KOG0098|consen 143 -LIFMETSAKTA----------ENVEEAFINTAK 165 (216)
T ss_pred -ceeehhhhhhh----------hhHHHHHHHHHH
Confidence 45789999999 888877665544
No 275
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=4.5e-12 Score=116.55 Aligned_cols=157 Identities=13% Similarity=0.054 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhhhHhcCccccccccccCCChhhhhcCceE---Ee--eE--------EEEecCCeeE
Q psy3124 45 HCNVGTIGHVDHGKTTLTA-AITKVAAKIGKSKFITFDQIDRAPEEKARGITI---NI--AH--------VEYSTNTRHY 110 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~-~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti---~~--~~--------~~~~~~~~~i 110 (463)
..+|+++|..++|||||+. ++.+.....+. ...+. -.|+ +. .. ..++.....+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~-----------f~~~~--~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l 68 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQ-----------LLATH--VPTVWAIDQYRVCQEVLERSRDVVDGVSVSL 68 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCccccc-----------Ccccc--CCceecccceeEEeeeccccceeeCCEEEEE
Confidence 3689999999999999996 44332110000 00000 1111 00 00 0122334578
Q ss_pred EEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcH-HHHH-HHHHHHH--cCCCeEEEEEeccCcccHHH--------
Q psy3124 111 AHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-QTRE-HLLLSKQ--IGIDNVVVYVNKADLVDREI-------- 178 (463)
Q Consensus 111 ~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~-qt~e-~l~~~~~--l~ip~iivvvNKiD~~~~~~-------- 178 (463)
.|+||+|.+++.. ....+.+|++++|.|.++...- ...+ ++..... -++| +++|.||+|+.+...
T Consensus 69 ~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhccc
Confidence 8999999987432 2356889999999999875432 2222 2233322 2566 889999999863100
Q ss_pred ---------HHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 179 ---------MELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 179 ---------~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.....++.+++.+.++ ++++.+||+++ .+++++++.+..
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~----------~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQ----------FGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCC----------CCHHHHHHHHHH
Confidence 0112245555655554 58999999999 999999988765
No 276
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.40 E-value=2e-12 Score=104.24 Aligned_cols=91 Identities=23% Similarity=0.275 Sum_probs=80.3
Q ss_pred CCCCceeeeEEEEecC--------CCceEEEEEEecccccCCCEEEEecC------C----ceeeEEEEEEeeccccceE
Q psy3124 241 ITSPFILPIDNAIGVP--------GRGSVCIGTIKQGTIKRNDEAELLGF------N----SKFTCTISEIQVFQKKVSE 302 (463)
Q Consensus 241 ~~~p~~~~I~~~~~~~--------~~G~vv~G~v~~G~l~~gd~v~i~~~------~----~~~~~~V~sI~~~~~~v~~ 302 (463)
.++|++|+|.++|.+. .+|.|+.|+|.+|.|++||++.|.|- + .++.++|.||+.++..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 5789999999999998 79999999999999999999999853 1 2357899999999999999
Q ss_pred EccCCeEEE---EeccccccCcccceEEecCC
Q psy3124 303 ARAGDNVGV---LLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 303 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~~ 331 (463)
|.||+.+++ ...++.+.|..+|+|++.++
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~pG 113 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEPG 113 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecCC
Confidence 999999999 66677788999999998753
No 277
>KOG0073|consensus
Probab=99.39 E-value=6.6e-12 Score=107.40 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|.++|..||||||++.+|.+...+. . ..|.-......+..+..++++|..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~---------------i----~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDT---------------I----SPTLGFQIKTLEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccc---------------c----CCccceeeEEEEecceEEEEEEcCCcchhHH
Confidence 37999999999999999999997652111 0 1122222234556788999999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH----HHcCCCeEEEEEeccCcccHHHHHHHH--HHHHHHHHHcCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQ-MPQTREHLLLS----KQIGIDNVVVYVNKADLVDREIMELVE--LEVRDVLTAYGYD 196 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~--~~i~~~l~~~g~~ 196 (463)
-+..+...+|+.|+|+|..+.. +.++..++..+ +..|.| ++|+.||.|+...-..+++. -++.++++
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l~~~~i~~~~~L~~l~k----- 149 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGALSLEEISKALDLEELAK----- 149 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccccCHHHHHHhhCHHHhcc-----
Confidence 9999999999999999997653 34444444333 334666 88999999998432223332 23333333
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...++++-+||.+| +++.+=+++|..
T Consensus 150 s~~~~l~~cs~~tg----------e~l~~gidWL~~ 175 (185)
T KOG0073|consen 150 SHHWRLVKCSAVTG----------EDLLEGIDWLCD 175 (185)
T ss_pred ccCceEEEEecccc----------ccHHHHHHHHHH
Confidence 24588999999999 666665665544
No 278
>KOG0095|consensus
Probab=99.39 E-value=9.4e-12 Score=104.42 Aligned_cols=158 Identities=22% Similarity=0.179 Sum_probs=107.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
-.++|+++|+.|+|||.|+.+++..+...|.+..+ |+..-+.......+..++.||||+|+++|..
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgati--------------gvdfmiktvev~gekiklqiwdtagqerfrs 71 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFMIKTVEVNGEKIKLQIWDTAGQERFRS 71 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee--------------eeeEEEEEEEECCeEEEEEEeeccchHHHHH
Confidence 35799999999999999999999877666654322 2222233445555667889999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHH-HHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDRE-IMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~-~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+.++.+.|++.|||.|.+.... .-.-|.|+.... ..+- -|+|-||+|+.+.. .-+.+-+++.+. .
T Consensus 72 itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvl-kilvgnk~d~~drrevp~qigeefs~~----q---- 142 (213)
T KOG0095|consen 72 ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVL-KILVGNKIDLADRREVPQQIGEEFSEA----Q---- 142 (213)
T ss_pred HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceE-EEeeccccchhhhhhhhHHHHHHHHHh----h----
Confidence 99999999999999999886442 222233333222 2333 25789999998642 222222332221 1
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..-++..||+.. .+++.|+..+...+
T Consensus 143 dmyfletsakea----------~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 143 DMYFLETSAKEA----------DNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhhhcccch----------hhHHHHHHHHHHHH
Confidence 133678999998 88888887765533
No 279
>KOG0080|consensus
Probab=99.38 E-value=6e-12 Score=107.05 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=107.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|.++|..|+|||+|+-+++....+.. +...-|+...+..+.......++.||||+|+++|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~--------------~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDL--------------HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCcc--------------CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc
Confidence 358999999999999999998865422211 111224455555666666777899999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHH-HHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLL-SKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~-~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
-+-++.+.|-++|+|.|.+.-..-...++|.. +.. .++- .++|.||+|..++... -.++-.++.++++
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R~V--~reEG~kfAr~h~---- 148 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESERVV--DREEGLKFARKHR---- 148 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcccc--cHHHHHHHHHhhC----
Confidence 99999999999999999987443333344432 222 2333 2478999998643222 2345556666654
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+-|+.+||++. ++++..++.|..
T Consensus 149 -~LFiE~SAkt~----------~~V~~~Feelve 171 (209)
T KOG0080|consen 149 -CLFIECSAKTR----------ENVQCCFEELVE 171 (209)
T ss_pred -cEEEEcchhhh----------ccHHHHHHHHHH
Confidence 55899999998 676655555443
No 280
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.37 E-value=8.1e-12 Score=122.84 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=107.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccc----------cc-cCCChhh---hhcCceEEe-e---EE---
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITF----------DQ-IDRAPEE---KARGITINI-A---HV--- 101 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~----------~~-~d~~~~e---~~~g~Ti~~-~---~~--- 101 (463)
.....|+++|.+|+|||||++.|...+.+.|..-.... .. .|+...+ ...++-+-. . +.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 45689999999999999999999877766553211100 00 0111111 111111111 0 00
Q ss_pred ---------EEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 102 ---------EYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 102 ---------~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
.++..+..+.|+||+|..+-... ....||.+++|++...|..-|... .-.+.+. -++|+||+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~a-DIiVVNKaD 205 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK----KGIMELA-DLIVINKAD 205 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH----hhhhhhh-heEEeehhc
Confidence 01234678999999997632211 345699999998755554333321 1112223 268999999
Q ss_pred cccHHHHHHHHHHHHHHHHHcCC--CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 173 LVDREIMELVELEVRDVLTAYGY--DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g~--~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+.+....+....+++..+....- .....|++++||.++ .|+++|++.|..+++
T Consensus 206 l~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g----------~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 206 GDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG----------EGIDEIWQAIEDHRA 260 (332)
T ss_pred ccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 98665556666777776654321 123478999999999 999999999988654
No 281
>KOG1191|consensus
Probab=99.37 E-value=1.7e-12 Score=129.18 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=112.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh-
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY- 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f- 121 (463)
+..+.|+++|.+|+|||||+|+|++. |..-..-..|.|-|.....++.++..+.|+||+|..+-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~---------------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRE---------------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES 330 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcC---------------CceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc
Confidence 34589999999999999999999764 33333445688988888889999999999999997661
Q ss_pred --------HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-----------CeEEEEEeccCcccHHHHHHH
Q psy3124 122 --------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI-----------DNVVVYVNKADLVDREIMELV 182 (463)
Q Consensus 122 --------~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~i-----------p~iivvvNKiD~~~~~~~~~i 182 (463)
+......+..||.+++||||.++.+.+.....+.+...+. .+++++.||.|+.+.- .++
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~--~~~ 408 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI--PEM 408 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc--ccc
Confidence 2223456778999999999988776666555555555432 4577889999987431 111
Q ss_pred HHHHHHHHHHcCCCCCCCcEE-EccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 183 ELEVRDVLTAYGYDGDNTPFV-FGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 183 ~~~i~~~l~~~g~~~~~~pvi-~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
......++...+. ...|+. .+|+.++ ++++.|.++|.+.
T Consensus 409 ~~~~~~~~~~~~~--~~~~i~~~vs~~tk----------eg~~~L~~all~~ 448 (531)
T KOG1191|consen 409 TKIPVVYPSAEGR--SVFPIVVEVSCTTK----------EGCERLSTALLNI 448 (531)
T ss_pred cCCceeccccccC--cccceEEEeeechh----------hhHHHHHHHHHHH
Confidence 1111111111111 234444 4899998 8999998888764
No 282
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.36 E-value=5.9e-12 Score=119.51 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=68.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.+...-.++++|.+++|||||++.||+...+.+...| .|.......+++.+..++++|+||.-.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F----------------TTl~~VPG~l~Y~ga~IQild~Pgii~ 122 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF----------------TTLEPVPGMLEYKGAQIQLLDLPGIIE 122 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc----------------eecccccceEeecCceEEEEcCccccc
Confidence 3345678999999999999999999998777665554 244455566778899999999998533
Q ss_pred h-------HHHHHhhcccCCEEEEEEeCCCC
Q psy3124 121 Y-------IKNMISGASQMDGAIVVVAASEG 144 (463)
Q Consensus 121 f-------~~~~~~~~~~aD~ailVVda~~g 144 (463)
- -+..++.++.||++++|+|+...
T Consensus 123 gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 123 GASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred CcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 1 24567778999999999999754
No 283
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.34 E-value=7.2e-12 Score=102.86 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=72.1
Q ss_pred ccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC----------CCCCccccCCCEEEEEEEeceEEee
Q psy3124 335 MHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP----------GEDDGMLMPGEHGTVTMTLLYKMYL 404 (463)
Q Consensus 335 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----------~~~~~~l~~g~~~~v~~~~~~p~~~ 404 (463)
.+.+|+|+|.||+. .|+..||.+.+++|+.+++|+|... ..++.+|..||.|.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~------~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDE------EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred ccceeeEEEEEecC------cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEe
Confidence 46799999999983 4899999999999999999988721 1235789999999999999999999
Q ss_pred ccC------CeEEEEe--CCceEEEEEE
Q psy3124 405 SKG------QTFTIRE--NNKLVATGIV 424 (463)
Q Consensus 405 ~~~------~rfilr~--~~~tig~G~V 424 (463)
+++ +||+|+| +|.|+|+|.|
T Consensus 76 d~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred cchhhCCCcceEEEEECCCCcEEEEEeC
Confidence 975 8999954 5899999986
No 284
>KOG0076|consensus
Probab=99.32 E-value=1.4e-11 Score=106.49 Aligned_cols=173 Identities=18% Similarity=0.112 Sum_probs=116.2
Q ss_pred ccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 39 SKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 39 ~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
+..+|....|.|+|.-+|||||++.++-......-. .++ +.+.. .|+.+.....+..+..+.|||.-|+
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~-------~l~--~~ki~--~tvgLnig~i~v~~~~l~fwdlgGQ 79 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYG-------GLN--PSKIT--PTVGLNIGTIEVCNAPLSFWDLGGQ 79 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhc-------CCC--HHHee--cccceeecceeeccceeEEEEcCCh
Confidence 345567889999999999999999998433221100 011 11121 2333333334445778999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCC-c----HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQ-M----PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~-~----~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
+.....+......++++++||||.+.. + .+-+.....-...|+| +++.+||-|+.+.....++..-+.. .+.
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~~~~~El~~~~~~-~e~- 156 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNAMEAAELDGVFGL-AEL- 156 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhhhhHHHHHHHhhh-hhh-
Confidence 998888888889999999999999843 2 2223333444556899 7789999999866544444433222 222
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
......|+.|+||++| +|+.+-.+++...++.
T Consensus 157 -~~~rd~~~~pvSal~g----------egv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 157 -IPRRDNPFQPVSALTG----------EGVKEGIEWLVKKLEK 188 (197)
T ss_pred -cCCccCccccchhhhc----------ccHHHHHHHHHHHHhh
Confidence 2335689999999999 8888888888775543
No 285
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.32 E-value=4.2e-12 Score=106.81 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++|+.|+|||||+++|.+.... +....+...+.++.............+.++|++|.+.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 6899999999999999999865222 0111112223344433344444445588999999988766544
Q ss_pred hhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH-----cCCCeEEEEEeccC
Q psy3124 127 SGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ-----IGIDNVVVYVNKAD 172 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~-----l~ip~iivvvNKiD 172 (463)
..+..+|++++|+|+++... .+..+.+..+.. -.+| +++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 44788999999999987432 222222222222 2477 899999998
No 286
>PLN00023 GTP-binding protein; Provisional
Probab=99.32 E-value=2.7e-11 Score=117.59 Aligned_cols=140 Identities=21% Similarity=0.198 Sum_probs=90.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-------------CCe
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-------------NTR 108 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-------------~~~ 108 (463)
.....+|+++|+.++|||||+.++.+..... .....-|.+.....+.+.. ...
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--------------~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v 83 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--------------RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDF 83 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCccc--------------ccCCceeeeEEEEEEEECCcccccccccccCCceE
Confidence 3456899999999999999999997531110 0111123333333333321 234
Q ss_pred eEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---------------CCCeEEEEEeccC
Q psy3124 109 HYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---------------GIDNVVVYVNKAD 172 (463)
Q Consensus 109 ~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---------------~ip~iivvvNKiD 172 (463)
.+.|+||+|+++|.......++.+|++|+|.|.++... ......+..+... .+| +++|.||+|
T Consensus 84 ~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~D 162 (334)
T PLN00023 84 FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKAD 162 (334)
T ss_pred EEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECcc
Confidence 58899999999998887788899999999999987322 1222233333322 356 899999999
Q ss_pred cccHHH--H--HHHHHHHHHHHHHcCCC
Q psy3124 173 LVDREI--M--ELVELEVRDVLTAYGYD 196 (463)
Q Consensus 173 ~~~~~~--~--~~i~~~i~~~l~~~g~~ 196 (463)
+.+... . ....++.+++.++.|+-
T Consensus 163 L~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 163 IAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccccccccccccHHHHHHHHHHcCCC
Confidence 975421 1 12346777777777754
No 287
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.31 E-value=1.1e-11 Score=110.95 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe---cCCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS---TNTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---~~~~~i~liDtPGh~~f 121 (463)
...|.++|+.|||||+|+..|........ -.++ .....+. ..+..+.+||+|||.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T-------------------~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT-------------------VTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----------------------S-SEEEECCGSSTCGTCECEEEETT-HCC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe-------------------eccc-cCCceEEeecCCCCEEEEEECCCcHHH
Confidence 35789999999999999999975411000 0011 1111122 24567999999999998
Q ss_pred HHHHHhh---cccCCEEEEEEeCCCCC--cHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHH
Q psy3124 122 IKNMISG---ASQMDGAIVVVAASEGQ--MPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEV 186 (463)
Q Consensus 122 ~~~~~~~---~~~aD~ailVVda~~g~--~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i 186 (463)
....... +..+.++|+|||+..-. ...+.|+|..... .+.++++|+.||.|+........+++.+
T Consensus 63 r~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 63 RSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp CHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred HHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 7766665 78899999999997411 1334455432211 2345599999999998433333333333
No 288
>KOG0075|consensus
Probab=99.31 E-value=1e-11 Score=104.11 Aligned_cols=155 Identities=18% Similarity=0.119 Sum_probs=107.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh--hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV--AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~--~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
..+.+.++|-.+||||||++.+... ..+ -+.|+-.....+...+..+.++|.||+..|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~ed--------------------miptvGfnmrk~tkgnvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLED--------------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 78 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhh--------------------hcccccceeEEeccCceEEEEEecCCCccH
Confidence 4578999999999999999987431 111 122333333455556677889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHH----HHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTRE----HLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e----~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
...+.+..+.+|++++||||.+... +..++ .|......|+| ++|.-||.|+.++-.- .++.+.+.-..+.
T Consensus 79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~----~~li~rmgL~sit 153 (186)
T KOG0075|consen 79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK----IALIERMGLSSIT 153 (186)
T ss_pred HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH----HHHHHHhCccccc
Confidence 9999999999999999999987432 22333 23333446888 8899999999854221 1222222112233
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
...+-.+.+|++.. .+++.++++|.++
T Consensus 154 dREvcC~siScke~----------~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 154 DREVCCFSISCKEK----------VNIDITLDWLIEH 180 (186)
T ss_pred cceEEEEEEEEcCC----------ccHHHHHHHHHHH
Confidence 44566788999988 8999999999874
No 289
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.30 E-value=6.4e-11 Score=109.27 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe-----cCCeeEEEEeCCChhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS-----TNTRHYAHTDCPGHAD 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-----~~~~~i~liDtPGh~~ 120 (463)
++|+++|..++|||||+.++....... .....-|.+.......+. .....+.|+||+|+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--------------~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--------------RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 479999999999999999997541110 001111223333333332 1235688999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHH-HHHHHHH----------------------cCCCeEEEEEeccCcccHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTRE-HLLLSKQ----------------------IGIDNVVVYVNKADLVDRE 177 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e-~l~~~~~----------------------l~ip~iivvvNKiD~~~~~ 177 (463)
|.......++.+|++|+|.|.++...-+... ++..... .++| +++|.||+|+.++.
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~~r 145 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchhhc
Confidence 9877777889999999999998754322222 2222222 2466 89999999997542
Q ss_pred HHHH--HHHHHHHHHHHcCCCCCCCcEEEccchhh
Q psy3124 178 IMEL--VELEVRDVLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 178 ~~~~--i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
.... .......+.+++| .|-+..++...
T Consensus 146 ~~~~~~~~~~~~~ia~~~~-----~~~i~~~c~~~ 175 (202)
T cd04102 146 ESSGNLVLTARGFVAEQGN-----AEEINLNCTNG 175 (202)
T ss_pred ccchHHHhhHhhhHHHhcC-----CceEEEecCCc
Confidence 1111 1122223333444 45666666643
No 290
>KOG0093|consensus
Probab=99.30 E-value=3.2e-11 Score=101.11 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.++.++|+..+|||+++-+..+..... .--+.-|+......+.-.....++.++||.|++.|...+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~--------------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT 87 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT 87 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccccc--------------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH
Confidence 589999999999999998875432211 001112333333322222223468899999999999888
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHHH-HHHHH---HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTRE-HLLLS---KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~e-~l~~~---~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
-...++|++.||+.|......-...+ ..-+. .-.+.| +|+|.||||+.++..+. .+..+.+..++|+ .
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~eRvis--~e~g~~l~~~LGf-----e 159 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSERVIS--HERGRQLADQLGF-----E 159 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCce-EEEEecccCCccceeee--HHHHHHHHHHhCh-----H
Confidence 88999999999999998754322222 22222 235677 89999999997654332 2456677778886 3
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++..||+.+ -+++.+++.|...+
T Consensus 160 fFEtSaK~N----------inVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 160 FFETSAKEN----------INVKQVFERLVDII 182 (193)
T ss_pred Hhhhccccc----------ccHHHHHHHHHHHH
Confidence 899999998 78888888776644
No 291
>KOG0087|consensus
Probab=99.28 E-value=3.8e-11 Score=107.27 Aligned_cols=143 Identities=20% Similarity=0.145 Sum_probs=95.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f 121 (463)
..++|+++|.+++|||-|+.+++.. ....|....+-++........++ .+..||||+|+++|
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrn----------------EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy 76 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRN----------------EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY 76 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccc----------------ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh
Confidence 3578999999999999999998653 11222233344444444444444 45679999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..-+-++.+.|-+|+||.|.+.... ....+.|..++.+ +++ +++|-||+||.... ..-.++.+.+.+..+
T Consensus 77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL~~lr--aV~te~~k~~Ae~~~--- 150 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIV-IMLVGNKSDLNHLR--AVPTEDGKAFAEKEG--- 150 (222)
T ss_pred ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeE-EEEeecchhhhhcc--ccchhhhHhHHHhcC---
Confidence 9888888899999999999976332 2223334444443 567 77899999996411 111234444444433
Q ss_pred CCCcEEEccchhh
Q psy3124 198 DNTPFVFGSALLA 210 (463)
Q Consensus 198 ~~~pvi~~Sa~~~ 210 (463)
.+++.+||+.+
T Consensus 151 --l~f~EtSAl~~ 161 (222)
T KOG0087|consen 151 --LFFLETSALDA 161 (222)
T ss_pred --ceEEEeccccc
Confidence 67999999998
No 292
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.27 E-value=6.9e-11 Score=113.20 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=99.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh-----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH----- 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh----- 118 (463)
-.-.|+++|-+++|||||+++++.+..+.+...|. ....++..... .....+++.|.||.
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFT--------------TL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs 222 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFT--------------TLVPNLGVVRV-DGGESFVVADIPGLIEGAS 222 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCccc--------------cccCcccEEEe-cCCCcEEEecCcccccccc
Confidence 34568999999999999999999887777666553 12223333444 45667999999994
Q ss_pred ------hhhHHHHHhhcccCCEEEEEEeCCCCCc---HHHH-----HHHHH-HHHcCCCeEEEEEeccCcc-cHHHHHHH
Q psy3124 119 ------ADYIKNMISGASQMDGAIVVVAASEGQM---PQTR-----EHLLL-SKQIGIDNVVVYVNKADLV-DREIMELV 182 (463)
Q Consensus 119 ------~~f~~~~~~~~~~aD~ailVVda~~g~~---~qt~-----e~l~~-~~~l~ip~iivvvNKiD~~-~~~~~~~i 182 (463)
.+|++.. ..+-..+.|||.+.-.. .+.. |.-.+ ....+.| .+||+||||+. +++.++..
T Consensus 223 ~G~GLG~~FLrHI----ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 223 EGVGLGLRFLRHI----ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred cCCCccHHHHHHH----HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEEeccCCCcCHHHHHHH
Confidence 2466655 45788999999875321 1111 11122 1223455 77999999965 66665555
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 183 ELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 183 ~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+.+.+. .+. .+.+++||.++ .++++|+..+.+.+
T Consensus 298 ~~~l~~~---~~~----~~~~~ISa~t~----------~g~~~L~~~~~~~l 332 (369)
T COG0536 298 KKALAEA---LGW----EVFYLISALTR----------EGLDELLRALAELL 332 (369)
T ss_pred HHHHHHh---cCC----Ccceeeehhcc----------cCHHHHHHHHHHHH
Confidence 5444332 221 22333999998 88888888776644
No 293
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.27 E-value=1.3e-11 Score=116.52 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=85.8
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEE---------------------------E
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV---------------------------E 102 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~---------------------------~ 102 (463)
|+|++||||||++.++.+.....|+..... ++|...++......+|+... .
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v--NLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV--NLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE--E--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE--EcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 689999999999999998877766543322 34444443333333332110 0
Q ss_pred Ee-------cCCeeEEEEeCCChhhhH------HHHHhhccc--CCEEEEEEeCCCCCcHHH-----HHHHHHHHHcCCC
Q psy3124 103 YS-------TNTRHYAHTDCPGHADYI------KNMISGASQ--MDGAIVVVAASEGQMPQT-----REHLLLSKQIGID 162 (463)
Q Consensus 103 ~~-------~~~~~i~liDtPGh~~f~------~~~~~~~~~--aD~ailVVda~~g~~~qt-----~e~l~~~~~l~ip 162 (463)
++ .....+.++||||+.++. ......+.. .=++++++|+..-..+.. .-.+.....+++|
T Consensus 79 ~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 79 IDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 00 012379999999987753 334444442 456888999874322221 1222334457999
Q ss_pred eEEEEEeccCcccHH------------HH--------HHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCcc
Q psy3124 163 NVVVYVNKADLVDRE------------IM--------ELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPS 222 (463)
Q Consensus 163 ~iivvvNKiD~~~~~------------~~--------~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~ 222 (463)
.|.|+||+|+.++. .+ ..+.+++.+++..++. ..+++++|+.++ ++
T Consensus 159 -~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~----------~~ 224 (238)
T PF03029_consen 159 -HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDG----------EG 224 (238)
T ss_dssp -EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTT----------TT
T ss_pred -EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCCh----------HH
Confidence 67899999998632 01 1111223333333322 137999999999 99
Q ss_pred HHHHHHHhhh
Q psy3124 223 IHRLLDALDK 232 (463)
Q Consensus 223 i~~Ll~~L~~ 232 (463)
+.+|+..+++
T Consensus 225 ~~~L~~~id~ 234 (238)
T PF03029_consen 225 MEELLAAIDK 234 (238)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 294
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.26 E-value=1.6e-10 Score=108.06 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--CeeEEEEeCCChhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--TRHYAHTDCPGHADYI 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPGh~~f~ 122 (463)
..+|+++|..|+|||||+++|.+.....+. ...+............ ...+.++||+|+++|.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGY----------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccC----------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 489999999999999999999765332211 1122222222222222 4568899999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCC-C-CcHHHHHHHHHHHHcC---CCeEEEEEeccCcccH
Q psy3124 123 KNMISGASQMDGAIVVVAASE-G-QMPQTREHLLLSKQIG---IDNVVVYVNKADLVDR 176 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~-g-~~~qt~e~l~~~~~l~---ip~iivvvNKiD~~~~ 176 (463)
..+......++++++|+|... - ....+.+....+..+. .| ++++.||+|+.+.
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccc
Confidence 888888999999999999886 2 2333444444444443 66 8999999999843
No 295
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.21 E-value=7.8e-11 Score=96.39 Aligned_cols=138 Identities=28% Similarity=0.351 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC----hhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG----HADY 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----h~~f 121 (463)
.+++++|.+|+|||||+++|-+....- -.|.. ..|... -.||||| |..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly--------------------kKTQA---ve~~d~----~~IDTPGEy~~~~~~ 54 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY--------------------KKTQA---VEFNDK----GDIDTPGEYFEHPRW 54 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh--------------------cccce---eeccCc----cccCCchhhhhhhHH
Confidence 469999999999999999996541100 01111 122111 2499999 5666
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
-...+..+..+|.+++|-+|+++...-. -.++. .+.+++|-+++|.|+.....++..+ .+|.+.| .-|
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~-~~~k~vIgvVTK~DLaed~dI~~~~----~~L~eaG----a~~ 122 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPESRFP---PGFLD-IGVKKVIGVVTKADLAEDADISLVK----RWLREAG----AEP 122 (148)
T ss_pred HHHHHHHhhccceeeeeecccCccccCC---ccccc-ccccceEEEEecccccchHhHHHHH----HHHHHcC----Ccc
Confidence 5666667788999999999998653211 12222 2334488999999999655555444 4454455 357
Q ss_pred EEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 202 FVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 202 vi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+|.+|+... .|+++|+++|..
T Consensus 123 IF~~s~~d~----------~gv~~l~~~L~~ 143 (148)
T COG4917 123 IFETSAVDN----------QGVEELVDYLAS 143 (148)
T ss_pred eEEEeccCc----------ccHHHHHHHHHh
Confidence 999999988 899999999876
No 296
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.21 E-value=2e-10 Score=90.38 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=71.3
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce-eeEEEEEEeeccccceEEccCCeEEEEeccccccCcccce
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGM 325 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 325 (463)
..|.++|++++.|+++.|+|.+|.|++|+.+.++|.+.. .+.+|+||+.+++++++|.+|+.|++.|++.+ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 468899988888999999999999999999999997642 36799999999999999999999999999776 999999
Q ss_pred EE
Q psy3124 326 LL 327 (463)
Q Consensus 326 vl 327 (463)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 297
>KOG0086|consensus
Probab=99.21 E-value=4.4e-10 Score=94.90 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=95.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.+++.++|+.|.|||.|+.++.+...++. .. ..-|+......+.......++.||||+|+++|..-
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDd------------ss--HTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV 74 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDD------------SS--HTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV 74 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhccc------------cc--ceeeeeecceeeeecCcEEEEEEeecccHHHHHHH
Confidence 46899999999999999999876532211 00 11122221222333334567889999999999999
Q ss_pred HHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeE--EEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 125 MISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNV--VVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~i--ivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
+.++.+.|-+++||.|++... +......|.-++.+.-|.+ |++-||-|+.++... ...+...+..+ ..+-
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V--tflEAs~FaqE-----nel~ 147 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV--TFLEASRFAQE-----NELM 147 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh--hHHHHHhhhcc-----ccee
Confidence 999999999999999998643 3344455666777765544 445599999744322 12233333221 2356
Q ss_pred EEEccchhh
Q psy3124 202 FVFGSALLA 210 (463)
Q Consensus 202 vi~~Sa~~~ 210 (463)
+...||++|
T Consensus 148 flETSa~TG 156 (214)
T KOG0086|consen 148 FLETSALTG 156 (214)
T ss_pred eeeeccccc
Confidence 788999999
No 298
>KOG0090|consensus
Probab=99.20 E-value=1.6e-10 Score=103.53 Aligned_cols=126 Identities=20% Similarity=0.248 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
..|.++|..|+|||+|+-.|+..... ..-.++......|...+....++|.|||.+.....
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-------------------~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-------------------GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-------------------CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHH
Confidence 56999999999999999888643111 11233444555666677779999999999988777
Q ss_pred Hhhcc---cCCEEEEEEeCCCCC--cHHHHHHHHHH--HH---cCCCeEEEEEeccCccc---HHH-HHHHHHHHHHHH
Q psy3124 126 ISGAS---QMDGAIVVVAASEGQ--MPQTREHLLLS--KQ---IGIDNVVVYVNKADLVD---REI-MELVELEVRDVL 190 (463)
Q Consensus 126 ~~~~~---~aD~ailVVda~~g~--~~qt~e~l~~~--~~---l~ip~iivvvNKiD~~~---~~~-~~~i~~~i~~~l 190 (463)
...+. .+-++++|||+..-. .....|.+... .. .+.|+++++.||.|+.. ++. .+.+++|+..+.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHH
Confidence 77665 789999999987532 23334444321 12 34455999999999983 332 233445554443
No 299
>KOG0070|consensus
Probab=99.20 E-value=5e-11 Score=104.74 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=110.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.+...+|+++|--+|||||++..|-... .. ..-.|+....-.+++.+.+++++|.-|+.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E------------~v-------ttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGE------------IV-------TTVPTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCC------------cc-------cCCCccccceeEEEEcceEEEEEecCCCccc
Confidence 4567999999999999999998873210 00 0012333333345566889999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHH-HHH--c-CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLL-SKQ--I-GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~-~~~--l-~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.+.+..+....+++|+|||+++-.. +.+++-|.. +.. + +.| ++++.||.|+..+-.. .++.+.|.-..+.
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~als~----~ei~~~L~l~~l~ 149 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGALSA----AEITNKLGLHSLR 149 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccCCH----HHHHhHhhhhccC
Confidence 9999999999999999999987542 333333322 211 2 455 8899999999844322 2344444444444
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
....-+-.++|.+| +|+.+-+++|.+.+.
T Consensus 150 ~~~w~iq~~~a~~G----------~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 150 SRNWHIQSTCAISG----------EGLYEGLDWLSNNLK 178 (181)
T ss_pred CCCcEEeecccccc----------ccHHHHHHHHHHHHh
Confidence 44555778899999 999999999877543
No 300
>KOG0079|consensus
Probab=99.19 E-value=2.8e-10 Score=95.60 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+..|+|.+++|||+|+-++..... .++.+ ...|+...+....+..+..++.|+||+|.+.|...+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF---s~sYi-----------tTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF---SGSYI-----------TTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc---ccceE-----------EEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence 4568999999999999987743200 01110 111333344445555666788999999999999988
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcE
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPF 202 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pv 202 (463)
....+..+++++|.|.+.|.. ..-++.|..+... .+|. ++|.||.|....... ..++.+.+....| +..
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~-vLVGNK~d~~~RrvV--~t~dAr~~A~~mg-----ie~ 146 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPK-VLVGNKNDDPERRVV--DTEDARAFALQMG-----IEL 146 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccc-eecccCCCCccceee--ehHHHHHHHHhcC-----chh
Confidence 888999999999999998764 5555666555443 4674 588999999754322 2345666666655 558
Q ss_pred EEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 203 VFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 203 i~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
|..||+.. .+++..+..|..
T Consensus 147 FETSaKe~----------~NvE~mF~cit~ 166 (198)
T KOG0079|consen 147 FETSAKEN----------ENVEAMFHCITK 166 (198)
T ss_pred eehhhhhc----------ccchHHHHHHHH
Confidence 99999998 666665555544
No 301
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.18 E-value=1.3e-09 Score=103.63 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=88.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.....++|+++|.+|+|||||+|+|++..... .....+.|..........++..+++|||||..+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~---------------v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAA---------------TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 34567899999999999999999998651100 001113455554455566788999999999765
Q ss_pred hH------HH----HHhhc--ccCCEEEEEEeCCCC-CcHHHHHHHHHHH-HcCC---CeEEEEEeccCcccH-------
Q psy3124 121 YI------KN----MISGA--SQMDGAIVVVAASEG-QMPQTREHLLLSK-QIGI---DNVVVYVNKADLVDR------- 176 (463)
Q Consensus 121 f~------~~----~~~~~--~~aD~ailVVda~~g-~~~qt~e~l~~~~-~l~i---p~iivvvNKiD~~~~------- 176 (463)
.. .. +...+ ...|.+++|...+.. ......+.+.... .+|. .++++|+||+|..++
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~ 171 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTP 171 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCc
Confidence 41 11 11222 257888888655432 2233333333332 2442 469999999999732
Q ss_pred ---HHHHHHHHHHHHHHHHc--CCCCCCCcEEEccchhh
Q psy3124 177 ---EIMELVELEVRDVLTAY--GYDGDNTPFVFGSALLA 210 (463)
Q Consensus 177 ---~~~~~i~~~i~~~l~~~--g~~~~~~pvi~~Sa~~~ 210 (463)
+++...+..+++..-.. +......|++.++....
T Consensus 172 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~~ 210 (249)
T cd01853 172 FSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHPR 210 (249)
T ss_pred chHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCCc
Confidence 22223333333332111 11223478888775543
No 302
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.17 E-value=7.5e-10 Score=108.87 Aligned_cols=84 Identities=23% Similarity=0.276 Sum_probs=51.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEE-------------------Ee-cCC
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE-------------------YS-TNT 107 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~-------------------~~-~~~ 107 (463)
|+++|.+++|||||+++|++.....+..++.. . ..++...+.. .. ...
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT--------~----~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTT--------I----DPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcc--------c----cceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence 58999999999999999997633222221110 0 0011111110 00 123
Q ss_pred eeEEEEeCCCh----hhhH---HHHHhhcccCCEEEEEEeCCC
Q psy3124 108 RHYAHTDCPGH----ADYI---KNMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 108 ~~i~liDtPGh----~~f~---~~~~~~~~~aD~ailVVda~~ 143 (463)
..+.++||||. .++. ...+..++.||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 46899999996 3332 345567899999999999973
No 303
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.16 E-value=1.2e-09 Score=102.33 Aligned_cols=157 Identities=21% Similarity=0.286 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe-cCCeeEEEEeCCChhhhHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS-TNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDtPGh~~f~~~~ 125 (463)
+|.++|..+|||||+.+.+....... +-..-|.|+++....+. .....+++||+||+.+|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~---------------dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR---------------DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG---------------GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch---------------hccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 68999999999999999986542211 11222566666555554 345689999999998887653
Q ss_pred -----HhhcccCCEEEEEEeCCCCCcHHHHHHH----HHHHHc--CCCeEEEEEeccCcccHH----HHHHHHHHHHHHH
Q psy3124 126 -----ISGASQMDGAIVVVAASEGQMPQTREHL----LLSKQI--GIDNVVVYVNKADLVDRE----IMELVELEVRDVL 190 (463)
Q Consensus 126 -----~~~~~~aD~ailVVda~~g~~~qt~e~l----~~~~~l--~ip~iivvvNKiD~~~~~----~~~~i~~~i~~~l 190 (463)
..-.+.++++|+|+|+...........+ ..+... +++ +.|++.|||+.+++ .++.+.+.+.+.+
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 3345789999999999844333333322 233332 455 88999999998544 3445556666667
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...+.+ .+-++.+|-.. .++-+-+..+.+
T Consensus 145 ~~~~~~--~~~~~~TSI~D-----------~Sly~A~S~Ivq 173 (232)
T PF04670_consen 145 EDLGIE--DITFFLTSIWD-----------ESLYEAWSKIVQ 173 (232)
T ss_dssp HHTT-T--SEEEEEE-TTS-----------THHHHHHHHHHH
T ss_pred hhcccc--ceEEEeccCcC-----------cHHHHHHHHHHH
Confidence 666543 46677788765 355555555554
No 304
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.16 E-value=1e-09 Score=107.74 Aligned_cols=173 Identities=21% Similarity=0.192 Sum_probs=97.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccc----------ccc-CCChh-h--hhcCceEEeeEE-------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITF----------DQI-DRAPE-E--KARGITINIAHV------- 101 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~----------~~~-d~~~~-e--~~~g~Ti~~~~~------- 101 (463)
.+...|+++|.+|+|||||+..|.......|..-.... ..+ +.... + ...+..+.....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 34678999999999999999999877655543211100 000 10000 0 001111111000
Q ss_pred ---------EEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 102 ---------EYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 102 ---------~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
.++..+..+.|+||||...-. ...+..+|.++++.+...+.. .+... ....++| .++++||+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~-~~l~~~~-~ivv~NK~D 183 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIK-AGLMEIA-DIYVVNKAD 183 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHH-HHHhhhc-cEEEEEccc
Confidence 012347889999999965322 234566899988876554322 11111 1124667 578999999
Q ss_pred cccHHHHHHHHHHHHHHHHHcC--CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 173 LVDREIMELVELEVRDVLTAYG--YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g--~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+.+......+...+...+..+. ......|++++||+++ .|+++|++.|..+
T Consensus 184 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g----------~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 184 GEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEG----------RGIDELWDAIEEH 236 (300)
T ss_pred ccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCC----------CCHHHHHHHHHHH
Confidence 9865433322222222222211 1112357999999999 9999999988774
No 305
>PTZ00099 rab6; Provisional
Probab=99.15 E-value=3.2e-10 Score=102.48 Aligned_cols=117 Identities=21% Similarity=0.156 Sum_probs=80.6
Q ss_pred EecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEeccCcccHHH
Q psy3124 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLS-KQI--GIDNVVVYVNKADLVDREI 178 (463)
Q Consensus 103 ~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~-~~l--~ip~iivvvNKiD~~~~~~ 178 (463)
+......+.|+||||+++|...+...++.+|++|+|+|+++... ....+++..+ ... ++| +++|.||+|+.+...
T Consensus 24 ~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~ 102 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRK 102 (176)
T ss_pred ECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccC
Confidence 33344678899999999998888888899999999999987532 2223333322 222 445 789999999964221
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 179 MELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 179 ~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
.. .++.......++ .+++++||+++ .+++++++.|...+|..
T Consensus 103 v~--~~e~~~~~~~~~-----~~~~e~SAk~g----------~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 103 VT--YEEGMQKAQEYN-----TMFHETSAKAG----------HNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CC--HHHHHHHHHHcC-----CEEEEEECCCC----------CCHHHHHHHHHHHHHhc
Confidence 11 123333333332 56899999999 99999999998876543
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.13 E-value=4.9e-10 Score=111.10 Aligned_cols=169 Identities=16% Similarity=0.198 Sum_probs=94.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCCh---
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGH--- 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh--- 118 (463)
...++|+|+|.+|+|||||+|+|.+.-.+... .+.. ...| .|.+. ..|... -..+++||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~-aA~t------Gv~e----tT~~~--~~Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEG-AAPT------GVVE----TTMEP--TPYPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTT-S--S------SSHS----CCTS---EEEE-SS-TTEEEEEE--GGGS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcC-cCCC------CCCc----CCCCC--eeCCCCCCCCCeEEeCCCCCCC
Confidence 34689999999999999999999765322211 1100 0001 11111 123222 246999999995
Q ss_pred ----hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc--c-----------HHHHHH
Q psy3124 119 ----ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV--D-----------REIMEL 181 (463)
Q Consensus 119 ----~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~-----------~~~~~~ 181 (463)
.+|+..+ .+...|..|++.+.. ........+..+..+|.| +.+|-||+|.. . +..+++
T Consensus 100 ~f~~~~Yl~~~--~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~-fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~ 174 (376)
T PF05049_consen 100 NFPPEEYLKEV--KFYRYDFFIIISSER--FTENDVQLAKEIQRMGKK-FYFVRTKVDSDLYNERRRKPRTFNEEKLLQE 174 (376)
T ss_dssp S--HHHHHHHT--TGGG-SEEEEEESSS----HHHHHHHHHHHHTT-E-EEEEE--HHHHHHHHHCC-STT--HHTHHHH
T ss_pred CCCHHHHHHHc--cccccCEEEEEeCCC--CchhhHHHHHHHHHcCCc-EEEEEecccccHhhhhccCCcccCHHHHHHH
Confidence 3355544 467789877665543 233444555667778888 89999999972 1 123456
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 182 VELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 182 i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
+.+.+.+.|.+.|.. ..+||.+|+..- ...++..|.+.|...+|...+
T Consensus 175 IR~~c~~~L~k~gv~--~P~VFLVS~~dl--------~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 175 IRENCLENLQKAGVS--EPQVFLVSSFDL--------SKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHHHHHHCTT-S--S--EEEB-TTTT--------TSTTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHcCCC--cCceEEEeCCCc--------ccCChHHHHHHHHHHhHHHHH
Confidence 666777777776663 357899998753 225678888888877766543
No 307
>KOG1532|consensus
Probab=99.13 E-value=7.4e-10 Score=102.74 Aligned_cols=177 Identities=18% Similarity=0.237 Sum_probs=103.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee-----------------------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA----------------------- 99 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~----------------------- 99 (463)
+....|.++|..||||||++.+|...+.......... ++|..-.+...+..+++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi--NLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI--NLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE--eCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 3457889999999999999999987776654432211 222222222222222210
Q ss_pred --EE--EE---------ecCCeeEEEEeCCChhh-h--------HHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHH--
Q psy3124 100 --HV--EY---------STNTRHYAHTDCPGHAD-Y--------IKNMISGASQMDGAIVVVAASEGQMPQTR--EHL-- 153 (463)
Q Consensus 100 --~~--~~---------~~~~~~i~liDtPGh~~-f--------~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l-- 153 (463)
.+ .| ..+...+.+|||||+.. | +.+. -+....-.+++|||....-.+.|- ..|
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~-lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITET-LASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhh-HhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 00 00 11345699999999754 2 1111 112345778899998665444332 223
Q ss_pred -HHHHHcCCCeEEEEEeccCcccHHHHHHHHHHH---HHHHHHc--CC------------C--CCCCcEEEccchhhccC
Q psy3124 154 -LLSKQIGIDNVVVYVNKADLVDREIMELVELEV---RDVLTAY--GY------------D--GDNTPFVFGSALLALQG 213 (463)
Q Consensus 154 -~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i---~~~l~~~--g~------------~--~~~~pvi~~Sa~~~~~~ 213 (463)
.++....+| +||+.||+|+.+.+...+...+. ++.+.+. ++ + ...+.++.+|+.+|
T Consensus 174 cSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG--- 249 (366)
T KOG1532|consen 174 CSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG--- 249 (366)
T ss_pred HHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC---
Confidence 344456889 89999999999765444333222 2222210 00 0 03466889999999
Q ss_pred CCCCCCCccHHHHHHHhhhc
Q psy3124 214 DSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 214 ~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.|.++++.++...
T Consensus 250 -------~G~ddf~~av~~~ 262 (366)
T KOG1532|consen 250 -------EGFDDFFTAVDES 262 (366)
T ss_pred -------CcHHHHHHHHHHH
Confidence 8999999888763
No 308
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.09 E-value=3.3e-09 Score=98.82 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh-----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD----- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~----- 120 (463)
++|+++|..|+||||++|.|++... +. ........|...........++.+++|||||..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~------f~--------~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEV------FK--------SGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-------SS----------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc------ee--------eccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 5899999999999999999976421 00 0001122333333344467889999999999433
Q ss_pred --hHHHHHh----hcccCCEEEEEEeCCCCCcHHHHHHHHHHH-HcC---CCeEEEEEeccCcccHHHHHHHH-----HH
Q psy3124 121 --YIKNMIS----GASQMDGAIVVVAASEGQMPQTREHLLLSK-QIG---IDNVVVYVNKADLVDREIMELVE-----LE 185 (463)
Q Consensus 121 --f~~~~~~----~~~~aD~ailVVda~~g~~~qt~e~l~~~~-~l~---ip~iivvvNKiD~~~~~~~~~i~-----~~ 185 (463)
...++.. .....|+++||+... ......+..+..+. .+| .++++|++|..|......+++.. ..
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~ 145 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEA 145 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchh
Confidence 2333333 234589999999987 55555555554433 334 35789999999987433233222 34
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++.++- .++..+....- .+.....+.+||+.+...
T Consensus 146 l~~li~~c~~-----R~~~f~n~~~~----~~~~~~qv~~Ll~~ie~m 184 (212)
T PF04548_consen 146 LQELIEKCGG-----RYHVFNNKTKD----KEKDESQVSELLEKIEEM 184 (212)
T ss_dssp HHHHHHHTTT-----CEEECCTTHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhcCC-----EEEEEeccccc----hhhhHHHHHHHHHHHHHH
Confidence 6777777662 24555544110 000014567777777663
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.07 E-value=1.6e-09 Score=100.72 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=93.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcccccccc---ccCCChhhhhcCceE-EeeEE--E-------------
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFD---QIDRAPEEKARGITI-NIAHV--E------------- 102 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~---~~d~~~~e~~~g~Ti-~~~~~--~------------- 102 (463)
+...++|+++|+.|+|||||+++|.......-+....... ..|....+ ..|..+ .+... .
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 3458999999999999999999997654321111111111 11211111 222221 11000 0
Q ss_pred EecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH--HHH
Q psy3124 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE--IME 180 (463)
Q Consensus 103 ~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~--~~~ 180 (463)
....+..+.|++|.|..... .......+..+.|+|+.++...+.. .....+.+ .++++||+|+.+.. ...
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a-~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEA-DLIVINKADLAEAVGFDVE 169 (207)
T ss_pred hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh----hHhHHhhC-CEEEEEHHHccccchhhHH
Confidence 00124578899999931100 1111235667789999876543221 12234556 67999999998532 222
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 181 LVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 181 ~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
. +.+.++..+ ...|++++||+++ .|++++++++..
T Consensus 170 ~----~~~~l~~~~---~~~~i~~~Sa~~g----------~gv~~l~~~i~~ 204 (207)
T TIGR00073 170 K----MKADAKKIN---PEAEIILMSLKTG----------EGLDEWLEFLEG 204 (207)
T ss_pred H----HHHHHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHH
Confidence 3 333343332 3478999999999 999999999876
No 310
>KOG0088|consensus
Probab=99.05 E-value=9.6e-10 Score=93.43 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=100.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.++|+++|.-=+|||+|+-+....... +. +-..-..+........+.....+.||||+|+++|..-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn------------~k--HlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL 78 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN------------CK--HLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL 78 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc------------hh--hHHHHHHHHhhcccccccceeeeeeeeccchHhhhcc
Confidence 578999999999999999877533110 00 0000000000011122233446789999999999876
Q ss_pred HHhhcccCCEEEEEEeCCCCCcHHHHHHH--HHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMPQTREHL--LLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~qt~e~l--~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
---+.+.+|+++||.|.++...-|-...| .+-..+ .+. ++||-||+|+..+. ....++...+.+..| .
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEeeR--~Vt~qeAe~YAesvG-----A 150 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEEER--QVTRQEAEAYAESVG-----A 150 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHHhh--hhhHHHHHHHHHhhc-----h
Confidence 55667899999999999886544443322 222233 355 78899999996432 233455666666655 3
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.++..||+.. .|+.+|++.|-.
T Consensus 151 ~y~eTSAk~N----------~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 151 LYMETSAKDN----------VGISELFESLTA 172 (218)
T ss_pred hheecccccc----------cCHHHHHHHHHH
Confidence 4789999998 899999887755
No 311
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.04 E-value=2.1e-09 Score=100.43 Aligned_cols=168 Identities=22% Similarity=0.208 Sum_probs=98.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcccccc-----------ccccCCC---hhhhhcCceEEeeEE-------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-----------FDQIDRA---PEEKARGITINIAHV------- 101 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~-----------~~~~d~~---~~e~~~g~Ti~~~~~------- 101 (463)
.+...|++.|++|+|||||++.|.....+.|..-... .-.-|+. ......++-+-....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3467999999999999999999987776655321100 0011222 122233443322110
Q ss_pred ---------EEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHHcCCCeEEEEEec
Q psy3124 102 ---------EYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQIGIDNVVVYVNK 170 (463)
Q Consensus 102 ---------~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~l~ip~iivvvNK 170 (463)
-++..++.++|+.|.|.-+--- .-...+|..++|+.+..|..-|. ...+.+ ..+ +|+||
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi-~vVNK 176 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADI-FVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SE-EEEE-
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccE-EEEeC
Confidence 0123578899999999544222 22356999999999887765443 223333 334 78999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHcC--CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 171 ADLVDREIMELVELEVRDVLTAYG--YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 171 iD~~~~~~~~~i~~~i~~~l~~~g--~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.|+... +....+++..+.-.. -..+..|++.+||.++ .|+++|+++|..+
T Consensus 177 aD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~----------~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 177 ADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEG----------EGIDELWEAIDEH 228 (266)
T ss_dssp -SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTT----------BSHHHHHHHHHHH
T ss_pred CChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCC----------CCHHHHHHHHHHH
Confidence 996533 344556666665432 1223479999999999 9999999999874
No 312
>KOG0091|consensus
Probab=99.02 E-value=1.2e-08 Score=87.32 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEe-cCCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYS-TNTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~-~~~~~i~liDtPGh~~f 121 (463)
..++.++|..-+|||+|+..++...... ..|. .+.+|.- .+.++ ....++.++||+|+++|
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfae---------lsdp-------tvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAE---------LSDP-------TVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccc---------cCCC-------ccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 4688999999999999999987541110 1111 1111100 00111 01235789999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHH----H-HHHcC---CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHLL----L-SKQIG---IDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~----~-~~~l~---ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
...+.++.+++-++++|.|.+... .-||.. . +...+ .+-+.+|-.|+|+.+.. +...++.+++.+.+
T Consensus 72 rsitksyyrnsvgvllvyditnr~---sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR--qVt~EEaEklAa~h 146 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRE---SFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR--QVTAEEAEKLAASH 146 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchh---hHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc--cccHHHHHHHHHhc
Confidence 999999999999999999988743 333332 1 22223 22356778999998543 33346777788887
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
|+ .++.+||+++ .++++-++.|.+
T Consensus 147 gM-----~FVETSak~g----------~NVeEAF~mlaq 170 (213)
T KOG0091|consen 147 GM-----AFVETSAKNG----------CNVEEAFDMLAQ 170 (213)
T ss_pred Cc-----eEEEecccCC----------CcHHHHHHHHHH
Confidence 74 4899999999 777776666654
No 313
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.01 E-value=6.4e-09 Score=102.89 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=101.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHh--cC--ccccccccccCCChhhhhcC---ceEEeeE-----EEE---ecCCe
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAK--IG--KSKFITFDQIDRAPEEKARG---ITINIAH-----VEY---STNTR 108 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~--~g--~~~~~~~~~~d~~~~e~~~g---~Ti~~~~-----~~~---~~~~~ 108 (463)
..+-|+++|++++|||||++++.+.+.- .. ....| ..|..+. ...| .|.+..+ ..+ +.-..
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~R---a~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~~~ 91 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKER---AQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGTKF 91 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhH---HHhccCc-CCCCCCcccCCCccccCcceEEeccCCCcc
Confidence 4688999999999999999999876211 11 00000 1111111 1235 3333333 111 12236
Q ss_pred eEEEEeCCChhh-------------------------hHHH----HHhhcc-cCCEEEEEE-eCC------CCCcHHHHH
Q psy3124 109 HYAHTDCPGHAD-------------------------YIKN----MISGAS-QMDGAIVVV-AAS------EGQMPQTRE 151 (463)
Q Consensus 109 ~i~liDtPGh~~-------------------------f~~~----~~~~~~-~aD~ailVV-da~------~g~~~qt~e 151 (463)
++.++||+|..+ |... +..-+. .+|.+|+|. |++ ++......+
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 789999999533 1111 233445 799999999 875 455677778
Q ss_pred HHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 152 HLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 152 ~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.+..++..++| +++++||+|-..++. ..+.+++. .++ .+|++++|+..- ....+..+|+.+.
T Consensus 172 ~i~eLk~~~kP-fiivlN~~dp~~~et-~~l~~~l~---eky-----~vpvl~v~c~~l--------~~~DI~~il~~vL 233 (492)
T TIGR02836 172 VIEELKELNKP-FIILLNSTHPYHPET-EALRQELE---EKY-----DVPVLAMDVESM--------RESDILSVLEEVL 233 (492)
T ss_pred HHHHHHhcCCC-EEEEEECcCCCCchh-HHHHHHHH---HHh-----CCceEEEEHHHc--------CHHHHHHHHHHHH
Confidence 88999999999 899999999432221 22222322 223 278999998764 1145666666554
Q ss_pred hcCC
Q psy3124 232 KHIP 235 (463)
Q Consensus 232 ~~l~ 235 (463)
..+|
T Consensus 234 ~EFP 237 (492)
T TIGR02836 234 YEFP 237 (492)
T ss_pred hcCC
Confidence 4344
No 314
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.01 E-value=2.9e-09 Score=98.03 Aligned_cols=164 Identities=17% Similarity=0.237 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhh--hcCc-----eEEe----e---EEEE--------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEK--ARGI-----TINI----A---HVEY-------- 103 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~--~~g~-----Ti~~----~---~~~~-------- 103 (463)
.+|+++|+.|+|||||+++|.+.....................+. ..+. .+.+ . ...+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 579999999999999999998764433221111111111111111 1111 1100 0 0000
Q ss_pred ------ecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH-
Q psy3124 104 ------STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR- 176 (463)
Q Consensus 104 ------~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~- 176 (463)
......+++|+|.|.. ...... -..+|.+++|+|+.++...+.. . ....... =++++||+|+.+.
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~a-d~~~~~k~d~~~~~ 153 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRS-DLLVINKIDLAPMV 153 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhc-cEEEEEhhhccccc
Confidence 1124568899999931 111111 1126889999999886542211 1 1122222 1578999999852
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 177 -EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 177 -~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
...+.+.+++ +.++ ...|++++||+++ .|+++++++|.++.
T Consensus 154 ~~~~~~~~~~~----~~~~---~~~~i~~~Sa~~g----------~gi~el~~~i~~~~ 195 (199)
T TIGR00101 154 GADLGVMERDA----KKMR---GEKPFIFTNLKTK----------EGLDTVIDWIEHYA 195 (199)
T ss_pred cccHHHHHHHH----HHhC---CCCCEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 2333333343 3332 2588999999999 99999999998643
No 315
>KOG0395|consensus
Probab=99.01 E-value=3.7e-09 Score=96.93 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|..|+|||+|+-++.....-. ..|...+ +..........+...+.|+||+|.++|...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~---------~y~ptie------d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVE---------DYDPTIE------DSYRKELTVDGEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccc---------ccCCCcc------ccceEEEEECCEEEEEEEEcCCCcccChHH
Confidence 5689999999999999998875431110 0111111 111122233344456779999999999988
Q ss_pred HHhhcccCCEEEEEEeCCCCCc----HHHHHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM----PQTREHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~----~qt~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
....+..+|+.++|.+.++-.. .+.++++...+. ..+| +++|.||+|+..... ...++...+...+ .
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~--V~~eeg~~la~~~-----~ 139 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQ--VSEEEGKALARSW-----G 139 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccc--cCHHHHHHHHHhc-----C
Confidence 8888999999999999987442 233333322222 3467 899999999975311 1123334443333 3
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++.+||+.. .++++++..|...+
T Consensus 140 ~~f~E~Sak~~----------~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 140 CAFIETSAKLN----------YNVDEVFYELVREI 164 (196)
T ss_pred CcEEEeeccCC----------cCHHHHHHHHHHHH
Confidence 77999999988 77777777776633
No 316
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.01 E-value=4e-09 Score=81.73 Aligned_cols=82 Identities=27% Similarity=0.428 Sum_probs=71.8
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccc
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERG 324 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 324 (463)
++++|.++|.+++.|.++.|+|.+|+|++||.+.+.+.+.....+|++|+.++.+++++.||+.+++.+... .+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccCCC
Confidence 467899999999999999999999999999999998744456789999999999999999999999987632 379999
Q ss_pred eEEe
Q psy3124 325 MLLA 328 (463)
Q Consensus 325 ~vl~ 328 (463)
|+++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9886
No 317
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.00 E-value=9.7e-09 Score=104.08 Aligned_cols=81 Identities=25% Similarity=0.219 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE--EEE--------------------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH--VEY-------------------- 103 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~-------------------- 103 (463)
++|+++|.+++|||||+++|++.....+... +.|++... ..+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~----------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCC----------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 4799999999999999999987633222111 11211111 000
Q ss_pred --ecCCeeEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCC
Q psy3124 104 --STNTRHYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAAS 142 (463)
Q Consensus 104 --~~~~~~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~ 142 (463)
......+.++|+||..+ .....+..++.+|++++|||+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 01224578999999421 2335566688999999999997
No 318
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.00 E-value=2.1e-09 Score=82.55 Aligned_cols=70 Identities=33% Similarity=0.499 Sum_probs=62.3
Q ss_pred ceEEEEEEecccccCCCEEEEecCCc---eeeEEEEEEeeccccceEEccCCeEEEEeccccccC-cccceEEe
Q psy3124 259 GSVCIGTIKQGTIKRNDEAELLGFNS---KFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQ-IERGMLLA 328 (463)
Q Consensus 259 G~vv~G~v~~G~l~~gd~v~i~~~~~---~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 328 (463)
|++++|||.+|+|++||+|.++|.+. +...+|++|+.++....++.+|+.+++.+...+.++ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999977333 234899999999999999999999999998888888 89999986
No 319
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.99 E-value=3.2e-09 Score=94.88 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCeeEEEEeCCChhhh----HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Q psy3124 106 NTRHYAHTDCPGHADY----IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f----~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKi 171 (463)
....+.|+||||..+- ...+...+..+|++|+|+++......+..+.+........+.+++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4567999999996442 23345566889999999999998776666666666666666699999995
No 320
>KOG0097|consensus
Probab=98.97 E-value=1.9e-08 Score=83.93 Aligned_cols=141 Identities=21% Similarity=0.224 Sum_probs=96.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE--EEEecCCeeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH--VEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~~~~i~liDtPGh~~f 121 (463)
-+++-.++|..|+|||.|+-.++....- ..-+ ..+.++... +......-++.++||.|+++|
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfm------------adcp----htigvefgtriievsgqkiklqiwdtagqerf 73 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFM------------ADCP----HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 73 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHh------------hcCC----cccceecceeEEEecCcEEEEEEeecccHHHH
Confidence 3678899999999999999998754211 1111 122223222 333344556789999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH----HHHHHcCCCe--EEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHL----LLSKQIGIDN--VVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l----~~~~~l~ip~--iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..-+.+..+.+-++++|.|... ..|..|+ .-++.+--|. ++++-||.|+.++. +...++.+++.++.|
T Consensus 74 ravtrsyyrgaagalmvyditr---rstynhlsswl~dar~ltnpnt~i~lignkadle~qr--dv~yeeak~faeeng- 147 (215)
T KOG0097|consen 74 RAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR--DVTYEEAKEFAEENG- 147 (215)
T ss_pred HHHHHHHhccccceeEEEEehh---hhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcc--cCcHHHHHHHHhhcC-
Confidence 9999999999999999999876 3455555 3345554443 45667999997442 223355666666655
Q ss_pred CCCCCcEEEccchhh
Q psy3124 196 DGDNTPFVFGSALLA 210 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~ 210 (463)
.-++..||++|
T Consensus 148 ----l~fle~saktg 158 (215)
T KOG0097|consen 148 ----LMFLEASAKTG 158 (215)
T ss_pred ----eEEEEeccccc
Confidence 45889999999
No 321
>KOG0081|consensus
Probab=98.96 E-value=9.8e-10 Score=93.43 Aligned_cols=144 Identities=20% Similarity=0.254 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC---------CeeEEEEeCC
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN---------TRHYAHTDCP 116 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---------~~~i~liDtP 116 (463)
+++..+|..|+|||+++-+.+..... ..++. .-|+........|... ...+.+|||+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~---~qFIs-----------TVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTA 75 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFN---TQFIS-----------TVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTA 75 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccc---ceeEE-----------EeecccccceEEEeccCCCCCCcceEEEEeeeccc
Confidence 46778999999999998766532110 01110 0011111111112111 1357799999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCC-CcHHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEG-QMPQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g-~~~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
|+++|..-+-...+.|-+.+|+.|-+.. .+-.++..+.++... .-|.+|++-||+|+.+.....+ .+..++..+
T Consensus 76 GQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~--~qa~~La~k 153 (219)
T KOG0081|consen 76 GQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE--DQAAALADK 153 (219)
T ss_pred cHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH--HHHHHHHHH
Confidence 9999999888888999999999998753 234455555555543 4588999999999986544332 456666677
Q ss_pred cCCCCCCCcEEEccchhh
Q psy3124 193 YGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~ 210 (463)
+| +|++..||-++
T Consensus 154 yg-----lPYfETSA~tg 166 (219)
T KOG0081|consen 154 YG-----LPYFETSACTG 166 (219)
T ss_pred hC-----CCeeeeccccC
Confidence 76 78999999998
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.95 E-value=4.7e-09 Score=100.85 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=91.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhc--CceE-EeeE--E-------------E
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKAR--GITI-NIAH--V-------------E 102 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti-~~~~--~-------------~ 102 (463)
.++...-|.++|.+|||||||++.|.+.+....+..............++-+ |+.+ .+.. . .
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 4456889999999999999999999876543322211111111111222222 2211 1110 0 0
Q ss_pred EecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH--HHH
Q psy3124 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE--IME 180 (463)
Q Consensus 103 ~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~--~~~ 180 (463)
+......+.||++-|.--.-... -+ ..+.-+.|++..+|.. +.. ..-..+... -++++||+|+++.. .++
T Consensus 180 L~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~d-kpl---Kyp~~f~~A-DIVVLNKiDLl~~~~~dle 251 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGED-KPL---KYPHMFAAA-SLMLLNKVDLLPYLNFDVE 251 (290)
T ss_pred HhhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECccccc-cch---hccchhhcC-cEEEEEhHHcCcccHHHHH
Confidence 11234467788888841100000 01 1234567788877642 111 111223445 35899999998632 233
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 181 LVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 181 ~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+. +.++.++ ...+++++||+++ .|+++|+++|..
T Consensus 252 ~~~----~~lr~ln---p~a~I~~vSA~tG----------eGld~L~~~L~~ 286 (290)
T PRK10463 252 KCI----ACAREVN---PEIEIILISATSG----------EGMDQWLNWLET 286 (290)
T ss_pred HHH----HHHHhhC---CCCcEEEEECCCC----------CCHHHHHHHHHH
Confidence 333 3333332 3588999999999 999999999876
No 323
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.92 E-value=1.1e-08 Score=91.29 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=89.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhh---cCceE---EeeEEE-E--------------
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKA---RGITI---NIAHVE-Y-------------- 103 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~---~g~Ti---~~~~~~-~-------------- 103 (463)
.+.|.+.|++|||||||+.++++.+.+.=+.........-....++- .|..+ .....+ .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 58999999999999999999988765541111111111111111111 11111 111011 0
Q ss_pred ecCCeeEEEEeCCChhhhHHHHHhhcccCC-EEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHH
Q psy3124 104 STNTRHYAHTDCPGHADYIKNMISGASQMD-GAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELV 182 (463)
Q Consensus 104 ~~~~~~i~liDtPGh~~f~~~~~~~~~~aD-~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i 182 (463)
....-.+.||...| ...... .-...| .-|+|||..+|...--+-+-.+.+ . =++||||.|+++.-.++
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~~----a-DllVInK~DLa~~v~~d-- 161 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK----A-DLLVINKTDLAPYVGAD-- 161 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCceeE----e-eEEEEehHHhHHHhCcc--
Confidence 01123677888888 211111 011245 889999999986422111100000 1 25789999998643321
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 183 ELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 183 ~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+.+.+..++.+ ...||+++|++++ +|++++++++..
T Consensus 162 levm~~da~~~n---p~~~ii~~n~ktg----------~G~~~~~~~i~~ 198 (202)
T COG0378 162 LEVMARDAKEVN---PEAPIIFTNLKTG----------EGLDEWLRFIEP 198 (202)
T ss_pred HHHHHHHHHHhC---CCCCEEEEeCCCC----------cCHHHHHHHHHh
Confidence 112222233322 4689999999999 999999999865
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.91 E-value=8.8e-09 Score=97.03 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=80.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh-HhcCccc----------------ccccc------ccCC--Chhh----h----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA-AKIGKSK----------------FITFD------QIDR--APEE----K---- 90 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~-~~~g~~~----------------~~~~~------~~d~--~~~e----~---- 90 (463)
..+.|+++|+.++||||++++|++.. ...+.+. ..... ..+. ...+ .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999998752 1111100 00000 0000 0000 0
Q ss_pred --hcCceEEeeEEEEec-CCeeEEEEeCCChhh--------h----HHH-HHhhcc-cCCEEEEEEeCCCCCcHHH-HHH
Q psy3124 91 --ARGITINIAHVEYST-NTRHYAHTDCPGHAD--------Y----IKN-MISGAS-QMDGAIVVVAASEGQMPQT-REH 152 (463)
Q Consensus 91 --~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~--------f----~~~-~~~~~~-~aD~ailVVda~~g~~~qt-~e~ 152 (463)
..+++-+.-...+.. .-..++++||||..+ . +.. +..++. ..+.+++|+||+.++..+. .+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 112222222233322 235799999999742 1 222 344556 4569999999999887766 566
Q ss_pred HHHHHHcCCCeEEEEEeccCcccH
Q psy3124 153 LLLSKQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 153 l~~~~~l~ip~iivvvNKiD~~~~ 176 (463)
.+.+...+.+ .++|+||+|..++
T Consensus 185 a~~ld~~~~r-ti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDPQGER-TIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHcCCc-EEEEEECCCCCCc
Confidence 7777778877 8899999999853
No 325
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.90 E-value=3.6e-08 Score=95.41 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=69.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
+...++|+++|.+|+||||++|+|++...... ... .+.+...........++.+++|||||..+.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~v---------s~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATV---------SAF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccc---------cCC------CCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 34578999999999999999999986421100 000 011111111223347889999999997653
Q ss_pred --HHH-HHhhc------ccCCEEEEEEeCCCC-CcHHHHHHHHHHH-HcC---CCeEEEEEeccCccc
Q psy3124 122 --IKN-MISGA------SQMDGAIVVVAASEG-QMPQTREHLLLSK-QIG---IDNVVVYVNKADLVD 175 (463)
Q Consensus 122 --~~~-~~~~~------~~aD~ailVVda~~g-~~~qt~e~l~~~~-~l~---ip~iivvvNKiD~~~ 175 (463)
... ....+ ...|++++|...+.. .....++.+..+. .+| ..++||++|+.|..+
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 111 11111 258999999554322 2223333333322 223 246899999999773
No 326
>KOG4252|consensus
Probab=98.90 E-value=1.6e-09 Score=93.93 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=95.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
-++++++|.-++||||++.+.++.+...+....+ |+..-...+....++.++.+|||.|++.|-..
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktI--------------gvdflerqi~v~~Edvr~mlWdtagqeEfDaI 85 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI--------------GVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI 85 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccccccccc--------------chhhhhHHHHhhHHHHHHHHHHhccchhHHHH
Confidence 5789999999999999999998765443322111 11110111122234566779999999999999
Q ss_pred HHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH--HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 125 MISGASQMDGAIVVVAASEGQ-MPQTREHLLLS--KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~--~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
+..+.++|.+.+||.+.++-. ++.+.+..+.. ....|| .++|-||+|+++...++. .++..+.+.+. ..
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds~~~~--~evE~lak~l~-----~R 157 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIP-TVFVQNKIDLVEDSQMDK--GEVEGLAKKLH-----KR 157 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCC-eEEeeccchhhHhhhcch--HHHHHHHHHhh-----hh
Confidence 989999999999999988744 45565555433 335788 778999999995544332 23333333332 33
Q ss_pred EEEccchhh
Q psy3124 202 FVFGSALLA 210 (463)
Q Consensus 202 vi~~Sa~~~ 210 (463)
++-+|++..
T Consensus 158 lyRtSvked 166 (246)
T KOG4252|consen 158 LYRTSVKED 166 (246)
T ss_pred hhhhhhhhh
Confidence 567788876
No 327
>KOG0071|consensus
Probab=98.88 E-value=3.1e-08 Score=82.74 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|..+|-.+|||||++-.|.-...... -.|+-.......+.+..++++|..|..+..+-
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~-------------------ipTvGFnvetVtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT-------------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc-------------------ccccceeEEEEEeeeeEEeeeeccCchhhhHH
Confidence 68899999999999999988843211100 01111111223446778999999999999999
Q ss_pred HHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH----HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQ-MPQTREHLLLS----KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
+..+.....++|+|+|+.+.. .+..++-+..+ .....+ ++|..||.|+.++..-+ ++.++|+--...+..
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~~pq----ei~d~leLe~~r~~~ 152 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI-ILILANKQDLPDAMKPQ----EIQDKLELERIRDRN 152 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce-EEEEecCcccccccCHH----HHHHHhccccccCCc
Confidence 999999999999999987642 23333322211 223455 78889999998654433 344444322233334
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.-+.|.+|.++ .++.+=+.+|.+.+
T Consensus 153 W~vqp~~a~~g----------dgL~eglswlsnn~ 177 (180)
T KOG0071|consen 153 WYVQPSCALSG----------DGLKEGLSWLSNNL 177 (180)
T ss_pred cEeeccccccc----------hhHHHHHHHHHhhc
Confidence 55778999998 88888888877644
No 328
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.88 E-value=5.4e-08 Score=94.25 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD-- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~-- 120 (463)
.+||.++|..|.|||||++.|.+........ ..+.......+..++.........++ ..++++||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 5899999999999999999997652221110 00111112223344444333443333 4678999999543
Q ss_pred -----------hH--------HHHHhh----c--ccCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 121 -----------YI--------KNMISG----A--SQMDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 121 -----------f~--------~~~~~~----~--~~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
|+ ..-... . ...|++|+.++++ +|+.+...+.+..+..+ ++ +|-|+.|.|..
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vN-vIPvIaKaD~l 155 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VN-VIPVIAKADTL 155 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SE-EEEEESTGGGS
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-cc-EEeEEeccccc
Confidence 21 111110 1 1248999999986 57777777666555433 34 88999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCC
Q psy3124 175 DREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 175 ~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..+.+...++.+.+.|+..++
T Consensus 156 t~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHcCc
Confidence 888889999999999988764
No 329
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.86 E-value=6.1e-08 Score=91.82 Aligned_cols=171 Identities=23% Similarity=0.215 Sum_probs=102.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcccccc-----------ccccCCChhhh---hcCceEEeeE--------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT-----------FDQIDRAPEEK---ARGITINIAH-------- 100 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~-----------~~~~d~~~~e~---~~g~Ti~~~~-------- 100 (463)
.....|+|.|.+|+|||||++.|.....+.|..-... .-.-|+....+ ..|+-+-...
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 3457899999999999999999987776666411100 00111111111 1122111100
Q ss_pred --------EEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 101 --------VEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 101 --------~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
.-++-.++.+.||.|-|.-+---. -...+|..++|.-+.-|..-|... .-.+.+-. |+||||+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK----~GimEiaD-i~vINKaD 200 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIK----AGIMEIAD-IIVINKAD 200 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHH----hhhhhhhh-eeeEeccC
Confidence 001234788999999995443211 123489999998887776655532 11222332 47899999
Q ss_pred cccHHHHHHHHHHHHHHHHHc----CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 173 LVDREIMELVELEVRDVLTAY----GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~----g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+...+. ...+++..|... .-+++..|++.+||..+ .|+++|++++.++.
T Consensus 201 ~~~A~~---a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g----------~Gi~~L~~ai~~h~ 253 (323)
T COG1703 201 RKGAEK---AARELRSALDLLREVWRENGWRPPVVTTSALEG----------EGIDELWDAIEDHR 253 (323)
T ss_pred hhhHHH---HHHHHHHHHHhhcccccccCCCCceeEeeeccC----------CCHHHHHHHHHHHH
Confidence 764332 233444444332 12345689999999999 89999999998754
No 330
>KOG0083|consensus
Probab=98.86 E-value=1.1e-09 Score=90.36 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=86.5
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhhhHHHHHh
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHADYIKNMIS 127 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~f~~~~~~ 127 (463)
++|....|||.|+-+.-....-.|. ++ ..+.++. ..+.......++.+|||.|+++|..-+.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~--fi-------------stvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN--FI-------------STVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc--ee-------------eeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 6899999999987554221111110 00 0111221 11222334567889999999999999999
Q ss_pred hcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEE
Q psy3124 128 GASQMDGAIVVVAASEGQ-MPQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFV 203 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi 203 (463)
..+.||+.+|+.|..... +...+..+...... .+. +.++-||+|+..+.... .++-..+.+.++ +|++
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~v~--~ddg~kla~~y~-----ipfm 138 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERAVK--RDDGEKLAEAYG-----IPFM 138 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHh-Hhhhccccccchhhccc--cchHHHHHHHHC-----CCce
Confidence 999999999999976543 33333333333332 233 55789999997543221 123344455555 7999
Q ss_pred Eccchhhcc
Q psy3124 204 FGSALLALQ 212 (463)
Q Consensus 204 ~~Sa~~~~~ 212 (463)
..||++|++
T Consensus 139 etsaktg~n 147 (192)
T KOG0083|consen 139 ETSAKTGFN 147 (192)
T ss_pred ecccccccc
Confidence 999999943
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.84 E-value=4.5e-08 Score=97.21 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----------------Ce
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-----------------TR 108 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----------------~~ 108 (463)
++|+++|.+++|||||+++|++.....+.. .+.|++.....+... ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny----------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc----------------ccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 679999999999999999998764322221 123333221111111 12
Q ss_pred eEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCC
Q psy3124 109 HYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAAS 142 (463)
Q Consensus 109 ~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~ 142 (463)
.+.++|+||..+ .....+..++.+|++++|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 589999999432 2334566678999999999985
No 332
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.83 E-value=2.5e-08 Score=78.61 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEecccc
Q psy3124 242 TSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVK 317 (463)
Q Consensus 242 ~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~ 317 (463)
+.||.+.|+++...+..|.+.++||.+|+|+.||.|.+.. + ...++.+|... ..++++|.|||++++. .
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~----g 73 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-E--EKIKITELRVFNNGEVVTADTVTAGDIAILT----G 73 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-C--cEEEeceeEEEeCCCeEECcEECCCCEEEEE----C
Confidence 3689999999999999999999999999999999997754 2 23577788665 3589999999999874 4
Q ss_pred ccCcccceEEec
Q psy3124 318 LKQIERGMLLAK 329 (463)
Q Consensus 318 ~~~i~~G~vl~~ 329 (463)
.+++..||+|++
T Consensus 74 l~~~~~Gdtl~~ 85 (85)
T cd03690 74 LKGLRVGDVLGD 85 (85)
T ss_pred CCCCcCccccCC
Confidence 567889998853
No 333
>KOG0072|consensus
Probab=98.81 E-value=6.5e-09 Score=87.17 Aligned_cols=158 Identities=17% Similarity=0.116 Sum_probs=101.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
...+|.++|-.|+||+|++-+|--. .. +. .-.|+........+.+-++.++|..|.....+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvg-----ev--------vt------tkPtigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVG-----EV--------VT------TKPTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccC-----cc--------cc------cCCCCCcCccccccccccceeeEccCcccccH
Confidence 5788999999999999997666211 10 00 01122222223344677899999999999888
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc--HHHHHHHHHH--HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM--PQTREHLLLS--KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~--~qt~e~l~~~--~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
-+..+....|.+|+|||.++-.. ..-.|...++ ..+.--.++|+.||+|........ |+...|.-..+....
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~----E~~~~L~l~~Lk~r~ 153 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRS----EVLKMLGLQKLKDRI 153 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHH----HHHHHhChHHHhhhe
Confidence 89899999999999999987432 1112222222 122224488999999987432222 222222111122234
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.++..||.++ .|+++.+++|.+-+
T Consensus 154 ~~Iv~tSA~kg----------~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 154 WQIVKTSAVKG----------EGLDPAMDWLQRPL 178 (182)
T ss_pred eEEEeeccccc----------cCCcHHHHHHHHHH
Confidence 77999999999 99999999997743
No 334
>KOG0074|consensus
Probab=98.79 E-value=3.8e-08 Score=82.32 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=93.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHADY 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~f 121 (463)
.+.++|.++|--+|||||++.+|...-.. ..-+..|..+ ...++. ..+++++|..|+...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~---------------hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~I 75 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR---------------HLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGI 75 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh---------------hccccCCcce----EEEeecCcEEEEEEecCCcccc
Confidence 45789999999999999999999643111 1111223222 222333 478999999999988
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHH----HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLS----KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.+.+..+....|..|+|||+++.- ++.+.+|+..+ +...+| +.+..||.|+..+...+++...+ .-.++.
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp-vlIfankQdlltaa~~eeia~kl----nl~~lr 150 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP-VLIFANKQDLLTAAKVEEIALKL----NLAGLR 150 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHhhcchHHHHHhc----chhhhh
Confidence 888888889999999999987643 34444444332 334577 77889999998554444433222 111222
Q ss_pred CCCCcEEEccchhh
Q psy3124 197 GDNTPFVFGSALLA 210 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~ 210 (463)
.....+-.+||++.
T Consensus 151 dRswhIq~csals~ 164 (185)
T KOG0074|consen 151 DRSWHIQECSALSL 164 (185)
T ss_pred hceEEeeeCccccc
Confidence 23345566788776
No 335
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.78 E-value=7.7e-07 Score=86.72 Aligned_cols=143 Identities=17% Similarity=0.273 Sum_probs=95.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhh-hhcCceEEeeEEEEecCC--eeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEE-KARGITINIAHVEYSTNT--RHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~ 119 (463)
.-.++|.++|..|.||||++|.|.+....... ..+....+ ...++.+......+..++ -.+++|||||..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfG 93 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET-------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFG 93 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCC-------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcc
Confidence 45689999999999999999999876322221 11112221 334444554444444444 357799999965
Q ss_pred hh---------------------HHHHHhhcc-------cCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEec
Q psy3124 120 DY---------------------IKNMISGAS-------QMDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNK 170 (463)
Q Consensus 120 ~f---------------------~~~~~~~~~-------~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNK 170 (463)
++ +.+-..--+ ..+++++.+-++ +|+.+...+.+..+... -.+|-||-|
T Consensus 94 D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~--vNlIPVI~K 171 (373)
T COG5019 94 DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR--VNLIPVIAK 171 (373)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc--cCeeeeeec
Confidence 53 221111111 248899999865 67888888776554432 237788999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 171 ADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 171 iD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
.|....+.+...++.+++.+...+
T Consensus 172 aD~lT~~El~~~K~~I~~~i~~~n 195 (373)
T COG5019 172 ADTLTDDELAEFKERIREDLEQYN 195 (373)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhC
Confidence 999988888999999999998865
No 336
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.78 E-value=5.7e-08 Score=76.32 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=63.9
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccC
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQ 320 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~ 320 (463)
|...|++++..+..|.+.++||.+|+|++||.|.+...+ ...+|..|... ..++++|.|||++++. + .++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~ 74 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG--KKERISRLLQPFADQYQEIPSLSAGNIGVIT--G--LKQ 74 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCC--CEEEeeEEEEEECCCceECCeeCCCCEEEEE--C--CCC
Confidence 356789999999999999999999999999999887544 23567777554 3689999999988873 3 466
Q ss_pred cccceEEec
Q psy3124 321 IERGMLLAK 329 (463)
Q Consensus 321 i~~G~vl~~ 329 (463)
++.||+|+.
T Consensus 75 ~~~Gdtl~~ 83 (83)
T cd04092 75 TRTGDTLVT 83 (83)
T ss_pred cccCCEEeC
Confidence 899999873
No 337
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.77 E-value=9e-08 Score=75.71 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=63.9
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCC-ceeeEEEEEEeec----cccceEEccCCeEEEEecccccc
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLK 319 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~-~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~ 319 (463)
|++.|+++...+..|.++++||.+|+|++||.|.+...+ .....+|.+|... ..+++++.|||++++. + .+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--g--l~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--G--IE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--C--CC
Confidence 578899999999999999999999999999999887542 2234567787544 3689999999988653 3 46
Q ss_pred CcccceEEe
Q psy3124 320 QIERGMLLA 328 (463)
Q Consensus 320 ~i~~G~vl~ 328 (463)
+++.||+|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 788999986
No 338
>KOG0410|consensus
Probab=98.77 E-value=2.1e-08 Score=95.26 Aligned_cols=150 Identities=24% Similarity=0.267 Sum_probs=97.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh-
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY- 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f- 121 (463)
.+...|+++|..|+|||||+++|++........-| ..+|.. ...+ .+ -+++.+.+.||-|+-.-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLF---ATLDpT---------~h~a--~L-psg~~vlltDTvGFisdL 240 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF---ATLDPT---------LHSA--HL-PSGNFVLLTDTVGFISDL 240 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhh---eeccch---------hhhc--cC-CCCcEEEEeechhhhhhC
Confidence 45678999999999999999999965332211111 112211 1111 11 24567889999996542
Q ss_pred -------HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcCCC------eEEEEEeccCcccHHHHHHHHHHHH
Q psy3124 122 -------IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQIGID------NVVVYVNKADLVDREIMELVELEVR 187 (463)
Q Consensus 122 -------~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~ip------~iivvvNKiD~~~~~~~~~i~~~i~ 187 (463)
...++.....+|.++.|+|.+++.- .|-...+..++.+|+| .+|=|=||+|..+...
T Consensus 241 P~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--------- 311 (410)
T KOG0410|consen 241 PIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--------- 311 (410)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC---------
Confidence 2334455677999999999998764 4555567778888886 3444557777653211
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..+..-.+++||++| .|++++++++...+
T Consensus 312 --------e~E~n~~v~isaltg----------dgl~el~~a~~~kv 340 (410)
T KOG0410|consen 312 --------EEEKNLDVGISALTG----------DGLEELLKAEETKV 340 (410)
T ss_pred --------ccccCCccccccccC----------ccHHHHHHHHHHHh
Confidence 001122578899999 99999999988743
No 339
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.73 E-value=1.1e-07 Score=72.80 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=62.1
Q ss_pred CCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcc
Q psy3124 243 SPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIE 322 (463)
Q Consensus 243 ~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 322 (463)
.|-.+.|...|....+. ++.|+|..|+|++|..+ .|. .-.+|+||+.+++++++|.+||.|++.+.+.. ++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~-~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR-KIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS-CEEEEEEEEETTEEESEEETT-EEEEEEET----TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE-EEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCC
Confidence 46678888888888888 77779999999999998 343 35789999999999999999999999999854 999
Q ss_pred cceEEe
Q psy3124 323 RGMLLA 328 (463)
Q Consensus 323 ~G~vl~ 328 (463)
.||+|-
T Consensus 75 eGDiLy 80 (81)
T PF14578_consen 75 EGDILY 80 (81)
T ss_dssp TT-EEE
T ss_pred CCCEEe
Confidence 999873
No 340
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.71 E-value=1.3e-07 Score=74.30 Aligned_cols=78 Identities=23% Similarity=0.201 Sum_probs=63.3
Q ss_pred eeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCc
Q psy3124 246 ILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQI 321 (463)
Q Consensus 246 ~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i 321 (463)
...|+++...+..|.++++||.+|+|++||.|.+...+ ...+|.+|... ..++++|.|||++.+. + .+++
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--~~~~ 75 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKG--KKERVGRLLRMHGKKQEEVEEAGAGDIGAVA--G--LKDT 75 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCC--cEEEeeEEEEEcCCCceECCEeCCCCEEEEE--C--CCCC
Confidence 46788888889999999999999999999999987644 33567777554 3689999999998883 3 4568
Q ss_pred ccceEEec
Q psy3124 322 ERGMLLAK 329 (463)
Q Consensus 322 ~~G~vl~~ 329 (463)
+.||+|++
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04088 76 ATGDTLCD 83 (83)
T ss_pred ccCCEeeC
Confidence 89999863
No 341
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.69 E-value=1.7e-07 Score=73.77 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=61.1
Q ss_pred eeEEEEe---cCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccC
Q psy3124 248 PIDNAIG---VPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQ 320 (463)
Q Consensus 248 ~I~~~~~---~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~ 320 (463)
.|+++.. .+..|.+.++||.+|+|++||.|.+...++ ..+|..|... ..++++|.|||++++. ..++
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~--~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~----gl~~ 75 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGK--EVRLSNPQQFFAQDRETVDEAYPGDIIGLV----NPGN 75 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCC--EEEeeEeEEEecCCeeEcCEECCCCEEEEE----CCCC
Confidence 4566666 888999999999999999999998865443 3567777654 3689999999998885 4577
Q ss_pred cccceEEec
Q psy3124 321 IERGMLLAK 329 (463)
Q Consensus 321 i~~G~vl~~ 329 (463)
++.||+||+
T Consensus 76 ~~~Gdtl~~ 84 (85)
T cd03689 76 FQIGDTLTE 84 (85)
T ss_pred ccccCEeeC
Confidence 889999984
No 342
>KOG2486|consensus
Probab=98.69 E-value=4.1e-08 Score=91.67 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=101.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhH--hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAA--KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH-- 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~--~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh-- 118 (463)
.....+++.|..+.|||+|++.+.+... +.++. ..|-|..+.++ .-+.++.++|.||.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~---------------K~g~Tq~in~f---~v~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS---------------KNGKTQAINHF---HVGKSWYEVDLPGYGR 195 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC---------------CCccceeeeee---eccceEEEEecCCccc
Confidence 3468999999999999999999975422 11110 33555544333 33568999999992
Q ss_pred --------hhhHHHHHhhc---ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHH------HHH
Q psy3124 119 --------ADYIKNMISGA---SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREI------MEL 181 (463)
Q Consensus 119 --------~~f~~~~~~~~---~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~------~~~ 181 (463)
+++.+-+..++ .+.=-+.|.+|++.++.+.....+..+-..++| +.+|+||||...... ...
T Consensus 196 a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~ 274 (320)
T KOG2486|consen 196 AGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLN 274 (320)
T ss_pred ccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC-eEEeeehhhhhhhccccccCcccc
Confidence 22222222222 344557899999999999999999999999999 889999999863211 111
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 182 VELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 182 i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
++..+..+.. ++-....|++.+|+.+. .|+++|+-.+.
T Consensus 275 i~~~f~~l~~--~~f~~~~Pw~~~Ssvt~----------~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 275 IKINFQGLIR--GVFLVDLPWIYVSSVTS----------LGRDLLLLHIA 312 (320)
T ss_pred ceeehhhccc--cceeccCCceeeecccc----------cCceeeeeehh
Confidence 1111111111 11123468888999888 66666654443
No 343
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.68 E-value=2.3e-07 Score=73.36 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=64.5
Q ss_pred ceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec---cccceEEccCCeEEEEeccc-cccC
Q psy3124 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF---QKKVSEARAGDNVGVLLRNV-KLKQ 320 (463)
Q Consensus 245 ~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~-~~~~ 320 (463)
|.+.|+++...+..|.++++||.+|+|++||.+.+...++ +.+|..|..+ ..+++++.|||++.+. .++ +.++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~--~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~ 77 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGK--EYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKD 77 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCC--eEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCc
Confidence 4678999999999999999999999999999998875443 3566666644 3589999999988774 222 2367
Q ss_pred cccceEEec
Q psy3124 321 IERGMLLAK 329 (463)
Q Consensus 321 i~~G~vl~~ 329 (463)
+..||+|++
T Consensus 78 ~~~Gdtl~~ 86 (86)
T cd03699 78 ARVGDTITL 86 (86)
T ss_pred cccccEeeC
Confidence 889999974
No 344
>KOG1486|consensus
Probab=98.68 E-value=2.7e-07 Score=84.87 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=62.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY-- 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f-- 121 (463)
..-+|+++|.+.+|||||+..++....+.....| .|.......+++++..+.++|.||...-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCcccccccc
Confidence 4689999999999999999999876544333222 2333344456678889999999996432
Q ss_pred -----HHHHHhhcccCCEEEEEEeCCCCC
Q psy3124 122 -----IKNMISGASQMDGAIVVVAASEGQ 145 (463)
Q Consensus 122 -----~~~~~~~~~~aD~ailVVda~~g~ 145 (463)
-+..++.++.||.+++|.||+.+.
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcch
Confidence 234456677899999999998653
No 345
>KOG0077|consensus
Probab=98.64 E-value=1.3e-07 Score=81.52 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=80.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.-++.++|--|||||||+..|-..... .. -.|...........+-.++-+|..||..-..-
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~---------qh----------vPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG---------QH----------VPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc---------cc----------CCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 567999999999999999988422000 00 01111222233445677889999999998888
Q ss_pred HHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeccCcccHH
Q psy3124 125 MISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQ----IGIDNVVVYVNKADLVDRE 177 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~ 177 (463)
+..+...+|++++.|||.+-. +...++++..+.. ..+| +++..||+|.+.+.
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVP-FLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCcc
Confidence 888899999999999998744 4556666655443 3578 77899999998543
No 346
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.61 E-value=3.8e-07 Score=71.23 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=59.8
Q ss_pred eeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCc
Q psy3124 246 ILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQI 321 (463)
Q Consensus 246 ~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i 321 (463)
...|+++...+. |.+.++||.+|+|++||.|.+...+. +.+|..|... ..+++++.|||++++ .++ + +
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~--~~~v~~i~~~~g~~~~~~~~~~aGdI~~i--~g~--~-~ 73 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGK--KVRVPRLVRMHSNEMEEVEEAGAGDICAI--FGI--D-C 73 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCC--EEEEeEEEEEeCCCceEccEECCCCEEEE--ECC--C-c
Confidence 456788887776 99999999999999999999876553 4677777554 358999999998875 333 4 8
Q ss_pred ccceEEe
Q psy3124 322 ERGMLLA 328 (463)
Q Consensus 322 ~~G~vl~ 328 (463)
+.||+|+
T Consensus 74 ~~Gdtl~ 80 (81)
T cd04091 74 ASGDTFT 80 (81)
T ss_pred ccCCEec
Confidence 8999986
No 347
>KOG1490|consensus
Probab=98.59 E-value=8.6e-08 Score=96.00 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=89.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
+...+.+.+||.+++||||+++.++.+..+.-...|. ..+.-++++ .+.-.+|.++||||.-|-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFT--------------TksL~vGH~--dykYlrwQViDTPGILD~ 228 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT--------------TKLLLVGHL--DYKYLRWQVIDTPGILDR 228 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccc--------------cchhhhhhh--hhheeeeeecCCccccCc
Confidence 3456789999999999999999998764443333221 011222333 334457899999996553
Q ss_pred ------HHHH--Hhhccc-CCEEEEEEeCCC--CCc--HHHHHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHH
Q psy3124 122 ------IKNM--ISGASQ-MDGAIVVVAASE--GQM--PQTREHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVR 187 (463)
Q Consensus 122 ------~~~~--~~~~~~-aD~ailVVda~~--g~~--~qt~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~ 187 (463)
.-+| +.++.. --++++++|-++ |.. .|..-.-.+-.. .+.| +|+|+||+|....+.+.+-.+++.
T Consensus 229 plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 229 PEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred chhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecccccCccccCHHHHHHH
Confidence 1222 233332 245788888775 332 333222122222 2445 889999999986555555455555
Q ss_pred HHHHHcCCCCCCCcEEEccchhh
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
+.++.-+ ++|++..|+.+.
T Consensus 308 ~~~~~~~----~v~v~~tS~~~e 326 (620)
T KOG1490|consen 308 QTIIDDG----NVKVVQTSCVQE 326 (620)
T ss_pred HHHHhcc----CceEEEecccch
Confidence 5555433 488999998876
No 348
>KOG1547|consensus
Probab=98.57 E-value=2.3e-06 Score=78.28 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=90.8
Q ss_pred ccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhc-CccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEE
Q psy3124 35 DDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYA 111 (463)
Q Consensus 35 ~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~ 111 (463)
.++.+.... .+||.++|..|.|||||++.|.....-+ +.. +...+.....+.+......++..+ -+++
T Consensus 37 ~~k~mk~GF-~FNIMVVgqSglgkstlinTlf~s~v~~~s~~--------~~~~~p~pkT~eik~~thvieE~gVklklt 107 (336)
T KOG1547|consen 37 RKKTMKTGF-DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSS--------DNSAEPIPKTTEIKSITHVIEEKGVKLKLT 107 (336)
T ss_pred HHHHHhccC-ceEEEEEecCCCCchhhHHHHHHHHHhhccCC--------CcccCcccceEEEEeeeeeeeecceEEEEE
Confidence 334444443 7999999999999999999997553222 111 111111111222222222333333 3578
Q ss_pred EEeCCCh---------------------hhhHHHHHhhcc-------cCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCC
Q psy3124 112 HTDCPGH---------------------ADYIKNMISGAS-------QMDGAIVVVAAS-EGQMPQTREHLLLSKQIGID 162 (463)
Q Consensus 112 liDtPGh---------------------~~f~~~~~~~~~-------~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip 162 (463)
+|||||. ++|+..-+...+ ..+++++.|.++ +.+.+...|.+..+.. +-
T Consensus 108 viDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~--vv 185 (336)
T KOG1547|consen 108 VIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE--VV 185 (336)
T ss_pred EecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh--hh
Confidence 9999994 334444333322 247788888876 3345666776654432 23
Q ss_pred eEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 163 NVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 163 ~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.+|-|+-|.|...-+...+.++.+++-|...+++
T Consensus 186 NvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 186 NVVPVIAKADTLTLEERSAFKQRIRKELEKHGID 219 (336)
T ss_pred eeeeeEeecccccHHHHHHHHHHHHHHHHhcCcc
Confidence 4677889999886655667778888888887753
No 349
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.56 E-value=1.1e-06 Score=91.96 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--- 121 (463)
..+|+++|.+|+||||++|.|++... +. .. ....+.| ..........+..+.+|||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekv------f~----vs----s~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVK------FS----TD----AFGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccc------cc----cc----CCCCCce-EEEEEEEEECCceEEEEECCCCCccccc
Confidence 47899999999999999999976411 00 00 0111222 2333334456789999999997642
Q ss_pred ---HHH----HHhhcc--cCCEEEEEEeCCCCCc-HHHHHHHHHH-HHcC---CCeEEEEEeccCccc
Q psy3124 122 ---IKN----MISGAS--QMDGAIVVVAASEGQM-PQTREHLLLS-KQIG---IDNVVVYVNKADLVD 175 (463)
Q Consensus 122 ---~~~----~~~~~~--~aD~ailVVda~~g~~-~qt~e~l~~~-~~l~---ip~iivvvNKiD~~~ 175 (463)
... ....+. .+|++|+|........ ......+..+ ..+| .+++|||+|..|..+
T Consensus 183 q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 183 QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112 222333 4798888876543222 1222222222 2233 467999999999984
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.56 E-value=1.1e-06 Score=86.62 Aligned_cols=147 Identities=15% Similarity=0.174 Sum_probs=82.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC---------hhhhhcCceEEeeEEE-------E----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA---------PEEKARGITINIAHVE-------Y---- 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---------~~e~~~g~Ti~~~~~~-------~---- 103 (463)
+...|+++|+.|+||||++..|.......|..-... ..|.. ......++.+-..... +
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li--~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA--AGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE--ecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 456889999999999999999988776554321111 11221 1122334433211000 0
Q ss_pred --ecCCeeEEEEeCCChhhh-------HHHHHhhc-----ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEe
Q psy3124 104 --STNTRHYAHTDCPGHADY-------IKNMISGA-----SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVN 169 (463)
Q Consensus 104 --~~~~~~i~liDtPGh~~f-------~~~~~~~~-----~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvN 169 (463)
...++.+.||||||.... +..+...+ ..+|..+||+||+.|..... +........++. -+++|
T Consensus 191 ~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~--giIlT 267 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLT--GIILT 267 (318)
T ss_pred HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCC--EEEEE
Confidence 125678999999996542 22222221 34788999999997643222 222222344554 36899
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEcc
Q psy3124 170 KADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGS 206 (463)
Q Consensus 170 KiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~S 206 (463)
|+|..... -. +...+... ..|+.+++
T Consensus 268 KlD~t~~~--G~----~l~~~~~~-----~~Pi~~v~ 293 (318)
T PRK10416 268 KLDGTAKG--GV----VFAIADEL-----GIPIKFIG 293 (318)
T ss_pred CCCCCCCc--cH----HHHHHHHH-----CCCEEEEe
Confidence 99976331 11 12222332 37888887
No 351
>PTZ00258 GTP-binding protein; Provisional
Probab=98.56 E-value=2.1e-07 Score=93.51 Aligned_cols=83 Identities=22% Similarity=0.192 Sum_probs=56.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN----------------- 106 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------------- 106 (463)
...+|+++|.+++|||||+++|++.....+..+ +.|++.........
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~p----------------ftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~ 83 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFP----------------FCTIDPNTARVNVPDERFDWLCKHFKPKSIV 83 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCC----------------CCcccceEEEEecccchhhHHHHHcCCcccC
Confidence 456899999999999999999987633322221 33443332222222
Q ss_pred CeeEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCC
Q psy3124 107 TRHYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAAS 142 (463)
Q Consensus 107 ~~~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~ 142 (463)
...+.++||||... .....+..++.+|++++|||+.
T Consensus 84 ~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 84 PAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23489999999432 3344566678899999999984
No 352
>KOG3883|consensus
Probab=98.56 E-value=6.3e-07 Score=76.17 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=100.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEE-eeEEEEecC---CeeEEEEeCCChhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITIN-IAHVEYSTN---TRHYAHTDCPGHAD 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~---~~~i~liDtPGh~~ 120 (463)
..+|+++|.-++|||.++++|.-...-.|.+ .--|++ +.....+++ ...+.|.||.|..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e----------------~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~ 72 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTE----------------LHPTIEDIYVASVETDRGAREQLRLYDTAGLQG 72 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCc----------------cccchhhheeEeeecCCChhheEEEeecccccC
Confidence 5689999999999999999996432222211 011111 111222222 24578999999988
Q ss_pred hHHHH-HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHH-----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 121 YIKNM-ISGASQMDGAIVVVAASEGQMPQTREHLLLSK-----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 121 f~~~~-~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~-----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
+-.+. ..++..+|+.+||.|..+...-|-.+.|..-. .-.+| ++|..||+|+..+...+. +.....
T Consensus 73 ~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~---d~A~~W---- 144 (198)
T KOG3883|consen 73 GQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDM---DVAQIW---- 144 (198)
T ss_pred chhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCH---HHHHHH----
Confidence 84343 44667799999999998755444444432211 12477 889999999974332221 111111
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD 240 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~ 240 (463)
...+.+....+++... .++-+.+..|...+..|...
T Consensus 145 a~rEkvkl~eVta~dR----------~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 145 AKREKVKLWEVTAMDR----------PSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred HhhhheeEEEEEeccc----------hhhhhHHHHHHHhccCCccc
Confidence 1124567788898887 78888888887766666543
No 353
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.55 E-value=1.7e-07 Score=90.20 Aligned_cols=80 Identities=24% Similarity=0.222 Sum_probs=52.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-----------------eeE
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-----------------RHY 110 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----------------~~i 110 (463)
|+++|.+++|||||+++|++.....+.. .+.|++.........+ ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~----------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc----------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 5899999999999999998763332221 1334333222222211 258
Q ss_pred EEEeCCChh-------hhHHHHHhhcccCCEEEEEEeCCC
Q psy3124 111 AHTDCPGHA-------DYIKNMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 111 ~liDtPGh~-------~f~~~~~~~~~~aD~ailVVda~~ 143 (463)
.++|+||.. ......+..++.+|++++|||+..
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 999999943 233345566788999999999853
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=3.7e-07 Score=80.70 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=63.2
Q ss_pred hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 128 GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
.+..+|.+++|+|++++...+..+....+...+.| +++|+||+|+.+.+..+. ...+.... ..|++++||
T Consensus 9 i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~----~~~~~~~~-----~~~~~~iSa 78 (156)
T cd01859 9 IIKESDVVLEVLDARDPELTRSRKLERYVLELGKK-LLIVLNKADLVPKEVLEK----WKSIKESE-----GIPVVYVSA 78 (156)
T ss_pred HHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCc-EEEEEEhHHhCCHHHHHH----HHHHHHhC-----CCcEEEEEc
Confidence 34569999999999887665555555555566777 889999999975432222 11222221 257999999
Q ss_pred hhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 208 LLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 208 ~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+++ .++++|++.|...+|
T Consensus 79 ~~~----------~gi~~L~~~l~~~~~ 96 (156)
T cd01859 79 KER----------LGTKILRRTIKELAK 96 (156)
T ss_pred ccc----------ccHHHHHHHHHHHHh
Confidence 999 899999999988665
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.47 E-value=1.9e-06 Score=83.28 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=73.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC---hh------hhhcCceEEeeEE-----E--E---
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA---PE------EKARGITINIAHV-----E--Y--- 103 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~------e~~~g~Ti~~~~~-----~--~--- 103 (463)
.+...|+++|++|+||||++..|.....+.|..-... ..|.. .. ....|+.+-.... . +
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li--~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA--AGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE--eCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4457889999999999999999987766555321110 12221 01 1222332211000 0 0
Q ss_pred ---ecCCeeEEEEeCCChhhhHHHHH-------hhc-----ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEE
Q psy3124 104 ---STNTRHYAHTDCPGHADYIKNMI-------SGA-----SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYV 168 (463)
Q Consensus 104 ---~~~~~~i~liDtPGh~~f~~~~~-------~~~-----~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvv 168 (463)
...++.+.||||||....-...+ ... ..+|..+||+|+..+.... .+.....+..++. -+++
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~--g~Il 224 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVGLT--GIIL 224 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCCCC--EEEE
Confidence 12467899999999765432222 222 2389999999998653211 2222333345655 3679
Q ss_pred eccCccc
Q psy3124 169 NKADLVD 175 (463)
Q Consensus 169 NKiD~~~ 175 (463)
||+|...
T Consensus 225 TKlDe~~ 231 (272)
T TIGR00064 225 TKLDGTA 231 (272)
T ss_pred EccCCCC
Confidence 9999974
No 356
>KOG3886|consensus
Probab=98.46 E-value=1.6e-06 Score=78.91 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=93.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhhhHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHADYIK 123 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~f~~ 123 (463)
..+|.++|..|||||++=..+..... ...-+.-|-|+++.+......+ -.++++|+.|++.|++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~---------------a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI---------------ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh---------------hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 46799999999999998666532210 0111234778887665554443 5678999999999998
Q ss_pred HHHh-----hcccCCEEEEEEeCCCCCcHHHHHHHHHHHH----c-CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 124 NMIS-----GASQMDGAIVVVAASEGQMPQTREHLLLSKQ----I-GIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 124 ~~~~-----~~~~aD~ailVVda~~g~~~qt~e~l~~~~~----l-~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
+..+ -.+..++.++|.|+....+....++.+.|.. . -.-++++.+.|||++..+..+.+-+.-.+.+..+
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~ 148 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRL 148 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHh
Confidence 8766 3567899999999988766555555544322 1 2234788999999995443333332222222222
Q ss_pred CCCCCCCcEEEccchh
Q psy3124 194 GYDGDNTPFVFGSALL 209 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~ 209 (463)
.. +-.+..+|.|-..
T Consensus 149 s~-~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 149 SR-PLECKCFPTSIWD 163 (295)
T ss_pred cc-cccccccccchhh
Confidence 21 1124567777654
No 357
>PRK14974 cell division protein FtsY; Provisional
Probab=98.45 E-value=8.5e-07 Score=87.78 Aligned_cols=126 Identities=21% Similarity=0.181 Sum_probs=72.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh---------hhhhcCceEEeeEE-------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP---------EEKARGITINIAHV------------- 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~~------------- 101 (463)
....|+++|.+|+||||++..|...+.+.|..-... ..|... .-..-|+.+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li--~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA--AGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe--cCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 457899999999999999999987766655321111 112110 01112332211100
Q ss_pred EEecCCeeEEEEeCCChhh----hHHHHHhh--cccCCEEEEEEeCCCCCcHHHHHHHH-HHHHcCCCeEEEEEeccCcc
Q psy3124 102 EYSTNTRHYAHTDCPGHAD----YIKNMISG--ASQMDGAIVVVAASEGQMPQTREHLL-LSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 102 ~~~~~~~~i~liDtPGh~~----f~~~~~~~--~~~aD~ailVVda~~g~~~qt~e~l~-~~~~l~ip~iivvvNKiD~~ 174 (463)
.....+..+.||||||... ++.++..- ...+|..+||+||..|- ...+.+. .....++. - +++||+|..
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~-g-iIlTKlD~~ 292 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGID-G-VILTKVDAD 292 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCC-E-EEEeeecCC
Confidence 0012356799999999654 33333221 23579999999998753 2222222 22346766 3 579999997
Q ss_pred c
Q psy3124 175 D 175 (463)
Q Consensus 175 ~ 175 (463)
.
T Consensus 293 ~ 293 (336)
T PRK14974 293 A 293 (336)
T ss_pred C
Confidence 4
No 358
>KOG2655|consensus
Probab=98.43 E-value=1.5e-05 Score=78.40 Aligned_cols=143 Identities=16% Similarity=0.259 Sum_probs=92.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f 121 (463)
-.+++.++|..|.|||||+|.|........+ ..+..+....+...+.......+.++ -+++++||||..|+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 4689999999999999999999655211110 11122222223444444444444443 35779999996553
Q ss_pred -------------HHHHH------------hhcc--cCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 122 -------------IKNMI------------SGAS--QMDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 122 -------------~~~~~------------~~~~--~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
+.... +... ..+++++.|... +|+.+...+.+..+. ..+. +|-||-|.|.
T Consensus 93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vN-iIPVI~KaD~ 170 (366)
T KOG2655|consen 93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVN-LIPVIAKADT 170 (366)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-cccc-ccceeecccc
Confidence 11111 0111 358899999875 578888877665433 2334 7778999999
Q ss_pred ccHHHHHHHHHHHHHHHHHcCC
Q psy3124 174 VDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 174 ~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..++.+...++.+.+.+...++
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCc
Confidence 9888888889999998887653
No 359
>KOG1673|consensus
Probab=98.42 E-value=4.9e-06 Score=70.95 Aligned_cols=159 Identities=17% Similarity=0.258 Sum_probs=108.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCCh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh 118 (463)
.+.-.++|+++|....|||||+-...+...+ +|......++. .........-.+.++|..|.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~d----------------e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~ 79 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYD----------------EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ 79 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhH----------------HHHHHHhCccceeeEEEecceEEEEEEEecCCc
Confidence 4456789999999999999998776543221 22222222222 12222233345779999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcC---CCeEEEEEeccCcc---cHHHHHHHHHHHHHHHH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQIG---IDNVVVYVNKADLV---DREIMELVELEVRDVLT 191 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~---ip~iivvvNKiD~~---~~~~~~~i~~~i~~~l~ 191 (463)
++|....--+...+-+++++.|-+.... ...++..++++.++ +| |+|.+|-|+. +++..+.+..+.+.+.+
T Consensus 80 ~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP--ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk 157 (205)
T KOG1673|consen 80 REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP--ILVGTKYDLFIDLPPELQETISRQARKYAK 157 (205)
T ss_pred HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce--EEeccchHhhhcCCHHHHHHHHHHHHHHHH
Confidence 9988766666677888899999877543 33456777887775 66 4789999976 66666777777787777
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
..+ .+.+++|+-.. -++..++..+..
T Consensus 158 ~mn-----AsL~F~Sts~s----------INv~KIFK~vlA 183 (205)
T KOG1673|consen 158 VMN-----ASLFFCSTSHS----------INVQKIFKIVLA 183 (205)
T ss_pred HhC-----CcEEEeecccc----------ccHHHHHHHHHH
Confidence 653 67899998877 666666665443
No 360
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.40 E-value=1.1e-06 Score=78.88 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCChh-hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHA-DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~-~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
-|||. +.+.++...+..||.+++|+|++++......+.+..+ .+.| .++|+||+|+.++.... +..+.++..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~-~ilVlNK~Dl~~~~~~~----~~~~~~~~~ 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKP-RIIVLNKADLADPKKTK----KWLKYFESK 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCC-EEEEEehhhcCChHHHH----HHHHHHHhc
Confidence 47874 4677788888999999999999876654333332222 3556 77999999998543221 122233322
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+ .+++++||+++ .++++|++.|...++
T Consensus 75 ~-----~~vi~iSa~~~----------~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 G-----EKVLFVNAKSG----------KGVKKLLKAAKKLLK 101 (171)
T ss_pred C-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 1 45889999998 899999999887654
No 361
>KOG0448|consensus
Probab=98.38 E-value=2.2e-06 Score=89.08 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=61.3
Q ss_pred eEEEEeCCCh---hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-c-HHHHHHHH
Q psy3124 109 HYAHTDCPGH---ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-D-REIMELVE 183 (463)
Q Consensus 109 ~i~liDtPGh---~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~-~~~~~~i~ 183 (463)
.+.++|.||. ..+..-.....-.+|+.|||+.|..-. .++..|+......+.|+++|+.||.|.. + ++-.+.+.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHH
Confidence 6889999994 233444445556799999999996644 4444454444445589999999999987 3 33344455
Q ss_pred HHHHHHHHHcCCCCCCCcEEEccchhh
Q psy3124 184 LEVRDVLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 184 ~~i~~~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
+++.+ |+-.......--++++||+.-
T Consensus 286 ~Qi~e-L~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 286 KQIHE-LSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred HHHHh-cCcccHhhhcCeeEEEeccch
Confidence 55432 111111112234788996543
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.38 E-value=2.6e-06 Score=86.53 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=72.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC--------h-hhhhcCceEEeeEEE-----------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA--------P-EEKARGITINIAHVE----------- 102 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~--------~-~e~~~g~Ti~~~~~~----------- 102 (463)
.+...|+++|..|+||||++..|.......|...... ..|.. . .....++.+......
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV--~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l 175 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV--CADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGV 175 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHH
Confidence 3457899999999999999999987766555321111 12221 1 011123332211100
Q ss_pred --EecCCeeEEEEeCCChhhh----HHHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccCc
Q psy3124 103 --YSTNTRHYAHTDCPGHADY----IKNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKADL 173 (463)
Q Consensus 103 --~~~~~~~i~liDtPGh~~f----~~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD~ 173 (463)
+...++.+.||||||.... +.++.. ....+|-++||+||..|-.. .+.+... ...++. -+++||+|.
T Consensus 176 ~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~--g~IlTKlD~ 251 (429)
T TIGR01425 176 EKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVG--SVIITKLDG 251 (429)
T ss_pred HHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCc--EEEEECccC
Confidence 0113678999999996543 333322 23457899999999876332 1122222 234444 467999998
Q ss_pred cc
Q psy3124 174 VD 175 (463)
Q Consensus 174 ~~ 175 (463)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 73
No 363
>KOG1707|consensus
Probab=98.38 E-value=1.6e-06 Score=88.71 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.+..+||+++|..|+|||||+-+|.....-.. +..+. .-+++- ..+..+.....++|++..++-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~--------VP~rl-----~~i~IP---advtPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA--------VPRRL-----PRILIP---ADVTPENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc--------ccccC-----CccccC---CccCcCcCceEEEecccccch
Confidence 34579999999999999999999975411100 00111 012221 222233445789999987776
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc--HHHHHHHHHHHHc-----CCCeEEEEEeccCccc
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM--PQTREHLLLSKQI-----GIDNVVVYVNKADLVD 175 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~--~qt~e~l~~~~~l-----~ip~iivvvNKiD~~~ 175 (463)
.......++.||++.+|.+.++... ..+...|=+.+.+ .+| +|+|-||+|..+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~ 129 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGD 129 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCcc
Confidence 6666778899999999998876321 2222233333443 478 999999999973
No 364
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=5.2e-06 Score=81.55 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=53.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEE--E----Ee----cCCeeEEEEe
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV--E----YS----TNTRHYAHTD 114 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~----~~----~~~~~i~liD 114 (463)
.++++|+|-+++|||||+++||..-.+.+..+|-. -|-..|+..-.... . +. .---.+.|+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~T--------IePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vD 73 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCT--------IEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVD 73 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCccc--------ccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEE
Confidence 46899999999999999999998754444444321 01111111100000 0 00 0112467999
Q ss_pred CCChhh-------hHHHHHhhcccCCEEEEEEeCC
Q psy3124 115 CPGHAD-------YIKNMISGASQMDGAIVVVAAS 142 (463)
Q Consensus 115 tPGh~~-------f~~~~~~~~~~aD~ailVVda~ 142 (463)
.+|... .-...+.-++.+|+++.|||+.
T Consensus 74 IAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 74 IAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 999422 2333445568899999999987
No 365
>KOG1534|consensus
Probab=98.37 E-value=1.5e-06 Score=78.12 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEE-------------------------
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV------------------------- 101 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~------------------------- 101 (463)
-+.++|+.||||||.++.+...+...||.--. -++|...+--....++++...
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~v--VNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHV--VNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEE--eecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 46789999999999999998777777764221 123333333333333332110
Q ss_pred --EEec-------CCeeEEEEeCCC------hhhhHHHHHhhcccC---CEEEEEEeCCCCCcHHH------HHHHHHHH
Q psy3124 102 --EYST-------NTRHYAHTDCPG------HADYIKNMISGASQM---DGAIVVVAASEGQMPQT------REHLLLSK 157 (463)
Q Consensus 102 --~~~~-------~~~~i~liDtPG------h~~f~~~~~~~~~~a---D~ailVVda~~g~~~qt------~e~l~~~~ 157 (463)
+++| -...+.++|+|| |..-+++.+..+.+- =.+++++|+.- +...+ .-.+..+.
T Consensus 83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHH
Confidence 0011 134689999999 445577777777653 34677777642 11222 23345556
Q ss_pred HcCCCeEEEEEeccCcccH
Q psy3124 158 QIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 158 ~l~ip~iivvvNKiD~~~~ 176 (463)
.+.+|+ |=|++|||+...
T Consensus 162 ~lE~P~-INvlsKMDLlk~ 179 (273)
T KOG1534|consen 162 SLEVPH-INVLSKMDLLKD 179 (273)
T ss_pred HhcCcc-hhhhhHHHHhhh
Confidence 688995 478999999843
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.35 E-value=5.2e-06 Score=74.65 Aligned_cols=124 Identities=20% Similarity=0.195 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh---hh------hhcCceEEeeEEE-------------Ee
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP---EE------KARGITINIAHVE-------------YS 104 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~~-------------~~ 104 (463)
.++++|++|+||||++..|.....+.|..-... ..|... .+ ...|+.+...... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i--~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV--AADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE--EcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999977666554321110 112111 00 1113222111000 01
Q ss_pred cCCeeEEEEeCCChhhh----HHHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 105 TNTRHYAHTDCPGHADY----IKNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f----~~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..++.+.++||||...+ +..+.... ...|.+++|+|+..+.. .......+....++. -+++||+|...
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~~--~viltk~D~~~ 153 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGIT--GVILTKLDGDA 153 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCCC--EEEEECCcCCC
Confidence 23567899999998533 33332221 34899999999975432 223333444556654 46789999874
No 367
>KOG0393|consensus
Probab=98.35 E-value=1.9e-06 Score=77.94 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=92.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEe-cCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYS-TNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~-~~~~~i~liDtPGh~~ 120 (463)
..++++++|...+|||.|+-..+.... +++....+. +- ...... .....+.++||.|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~f----------------p~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqed 65 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAF----------------PEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQED 65 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcC----------------cccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcc
Confidence 357899999999999999877754311 111111111 00 111221 2334567999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCc-H--HHHHHHHHHHH-cCCCeEEEEEeccCccc-HHHHHHHH---------HHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQM-P--QTREHLLLSKQ-IGIDNVVVYVNKADLVD-REIMELVE---------LEV 186 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~-~--qt~e~l~~~~~-l~ip~iivvvNKiD~~~-~~~~~~i~---------~~i 186 (463)
|-.-..-....+|.+|++.+...... . .++..-.+... -++| +|+|.+|.|+-+ ....+.+. ++.
T Consensus 66 YDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g 144 (198)
T KOG0393|consen 66 YDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVP-IILVGTKADLRDDPSTLEKLQRQGLEPVTYEQG 144 (198)
T ss_pred cccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCC-EEEEeehHHhhhCHHHHHHHHhccCCcccHHHH
Confidence 97643345678999988877655322 1 11111112222 3678 899999999973 22222222 234
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.++.+++|. ..++.+||++. .++.+.++.-.
T Consensus 145 ~~lA~~iga----~~y~EcSa~tq----------~~v~~vF~~a~ 175 (198)
T KOG0393|consen 145 LELAKEIGA----VKYLECSALTQ----------KGVKEVFDEAI 175 (198)
T ss_pred HHHHHHhCc----ceeeeehhhhh----------CCcHHHHHHHH
Confidence 445555553 56899999998 77777665443
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=3e-06 Score=84.80 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCC---hhhhh------cCceEEeeEEE-------EecCC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRA---PEEKA------RGITINIAHVE-------YSTNT 107 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~---~~e~~------~g~Ti~~~~~~-------~~~~~ 107 (463)
...++++|++|+||||++..|..... ..|...... -..|.. ..|.- .|+.+...... ....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~l-it~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVAL-LTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEE-EecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 46889999999999999999986543 334211110 012221 11221 24443322111 12356
Q ss_pred eeEEEEeCCChh---hhHHHHHhhc---ccCCEEEEEEeCCCCCcHHHHHHHHHHHHc--------CCCeEEEEEeccCc
Q psy3124 108 RHYAHTDCPGHA---DYIKNMISGA---SQMDGAIVVVAASEGQMPQTREHLLLSKQI--------GIDNVVVYVNKADL 173 (463)
Q Consensus 108 ~~i~liDtPGh~---~f~~~~~~~~---~~aD~ailVVda~~g~~~qt~e~l~~~~~l--------~ip~iivvvNKiD~ 173 (463)
+.+.||||||.. ++....+..+ ..++-.+||++|+.+....+.-...+.... ++.. +++||+|.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~--~I~TKlDE 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAG--CILTKLDE 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCE--EEEecccc
Confidence 789999999966 3344444444 334566999999987654443323333332 2333 56899999
Q ss_pred cc
Q psy3124 174 VD 175 (463)
Q Consensus 174 ~~ 175 (463)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 74
No 369
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=1.1e-06 Score=77.67 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=59.0
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEE
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFV 203 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi 203 (463)
.+++..+|.+++|+|++.+......+....+... +.| +|+|+||+|+.+++....... .+.+. + ..-++
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~~~~~~~~~----~~~~~-~---~~~~~ 73 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVPTWVTARWVK----ILSKE-Y---PTIAF 73 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC-EEEEEEchhcCCHHHHHHHHH----HHhcC-C---cEEEE
Confidence 4567889999999999987554444444444433 367 789999999986543222111 12111 1 11157
Q ss_pred EccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 204 FGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 204 ~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++||+.+ .++++|++.|..+
T Consensus 74 ~iSa~~~----------~~~~~L~~~l~~~ 93 (157)
T cd01858 74 HASINNP----------FGKGSLIQLLRQF 93 (157)
T ss_pred Eeecccc----------ccHHHHHHHHHHH
Confidence 8999998 8899999988764
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.32 E-value=2.1e-06 Score=78.44 Aligned_cols=105 Identities=15% Similarity=0.076 Sum_probs=65.2
Q ss_pred CChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHH-HHHHHHHHH-HHHHHc
Q psy3124 116 PGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREI-MELVELEVR-DVLTAY 193 (463)
Q Consensus 116 PGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~-~~~i~~~i~-~~l~~~ 193 (463)
|.+..|...+...+..+|++++|+|+.+.......+. .....+.| +++|+||+|+.+++. .+.+..... ...+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 4444456666777789999999999987542222221 12234666 889999999974322 111111110 111222
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++. ..+++++||+++ .|+++|++.|...++
T Consensus 96 ~~~--~~~i~~vSA~~~----------~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLK--PKDVILISAKKG----------WGVEELINAIKKLAK 125 (190)
T ss_pred CCC--cccEEEEECCCC----------CCHHHHHHHHHHHhh
Confidence 221 136899999999 999999999988654
No 371
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.31 E-value=5.9e-06 Score=66.28 Aligned_cols=79 Identities=24% Similarity=0.435 Sum_probs=60.3
Q ss_pred eeeeEEEEecC-CCceEEEEEEecccccCCCEEEEecCC-------ceeeEEEEEEeec----cccceEEccCCeEEEEe
Q psy3124 246 ILPIDNAIGVP-GRGSVCIGTIKQGTIKRNDEAELLGFN-------SKFTCTISEIQVF----QKKVSEARAGDNVGVLL 313 (463)
Q Consensus 246 ~~~I~~~~~~~-~~G~vv~G~v~~G~l~~gd~v~i~~~~-------~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l 313 (463)
.+.|+++...+ +.|.+.++||.+|+|+.||.+.+...+ ...+.+|..|... ..++++|.|||+|++.
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~- 80 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV- 80 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE-
Confidence 45678888888 889999999999999999999876422 2335677788665 3589999999999885
Q ss_pred ccccccCcccceEEe
Q psy3124 314 RNVKLKQIERGMLLA 328 (463)
Q Consensus 314 ~~~~~~~i~~G~vl~ 328 (463)
+ .++++.|++.+
T Consensus 81 -g--~~~~~~g~~~~ 92 (93)
T cd03700 81 -G--LDQLKSGTTAT 92 (93)
T ss_pred -C--CccCceEeEec
Confidence 3 34567777643
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.31 E-value=2.3e-06 Score=83.11 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=67.5
Q ss_pred CChhh-hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 116 PGHAD-YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 116 PGh~~-f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
|||.. -.+.+...+..+|.+++|+||+.+......+....+ .+.| +|+|+||+|++++...+. ..+.++..+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~~~~~~----~~~~~~~~~ 77 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADPAVTKQ----WLKYFEEKG 77 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCHHHHHH----HHHHHHHcC
Confidence 88754 566777888999999999999876543333322222 2556 889999999986533222 222233222
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+++++||.++ .++.+|++.|...++
T Consensus 78 -----~~vi~iSa~~~----------~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 78 -----IKALAINAKKG----------KGVKKIIKAAKKLLK 103 (276)
T ss_pred -----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 46899999998 899999998887654
No 373
>KOG3905|consensus
Probab=98.30 E-value=1.8e-05 Score=75.56 Aligned_cols=174 Identities=20% Similarity=0.261 Sum_probs=103.5
Q ss_pred hhhhhcccccccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 25 FKLLKYNCYSDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
-.|..+.++.++.+.... .+|.++|..++|||||+..|-+.. +.-.++-..|.+++.+.+.|..
T Consensus 35 s~iLsev~T~~~sklpsg---k~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd------------ 98 (473)
T KOG3905|consen 35 SEILSEVSTRTRSKLPSG---KNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDD------------ 98 (473)
T ss_pred HHHHHHhhhcccccCCCC---CeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchh------------
Confidence 344555555555555444 479999999999999999996642 1111111111122222222221
Q ss_pred cCCeeEE--EEe-CCChhhhHHHHHhhcccCCE-EEEEEeCCCCCc---------HHHHHHHH-----------------
Q psy3124 105 TNTRHYA--HTD-CPGHADYIKNMISGASQMDG-AIVVVAASEGQM---------PQTREHLL----------------- 154 (463)
Q Consensus 105 ~~~~~i~--liD-tPGh~~f~~~~~~~~~~aD~-ailVVda~~g~~---------~qt~e~l~----------------- 154 (463)
-.++. ++| -++|...++-.+.+.+.++. +||++|-+..+. ...+||+.
T Consensus 99 --~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~ 176 (473)
T KOG3905|consen 99 --LTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLE 176 (473)
T ss_pred --hhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 11222 222 35577777776666666655 466677665421 01112211
Q ss_pred ----------------------------------------HHHHcCCCeEEEEEeccCccc---------HHHHHHHHHH
Q psy3124 155 ----------------------------------------LSKQIGIDNVVVYVNKADLVD---------REIMELVELE 185 (463)
Q Consensus 155 ----------------------------------------~~~~l~ip~iivvvNKiD~~~---------~~~~~~i~~~ 185 (463)
+...+|+| ++||+||+|.++ .+.|+.+...
T Consensus 177 k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~ 255 (473)
T KOG3905|consen 177 KDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSH 255 (473)
T ss_pred HHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHH
Confidence 12234677 889999999852 2346667777
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++.+.-.+| ...|+.|++.. .+++-|..+|..
T Consensus 256 lRkFCLr~G-----aaLiyTSvKE~----------KNidllyKYivh 287 (473)
T KOG3905|consen 256 LRKFCLRYG-----AALIYTSVKET----------KNIDLLYKYIVH 287 (473)
T ss_pred HHHHHHHcC-----ceeEEeecccc----------cchHHHHHHHHH
Confidence 888777776 45789999988 899999999877
No 374
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.25 E-value=4.9e-06 Score=76.36 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChh---------hhhcCceEEeeEE-------------EE
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPE---------EKARGITINIAHV-------------EY 103 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~-------------~~ 103 (463)
..|+++|+.|+||||.+..|.......++.-... ..|.... .+.-|+....... .+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li--s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI--SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee--cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 4689999999999999999976655443221111 1122100 1111332221100 01
Q ss_pred ecCCeeEEEEeCCChhhhH----HHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 104 STNTRHYAHTDCPGHADYI----KNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 104 ~~~~~~i~liDtPGh~~f~----~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..++..+.||||||...+. .++.. .....+-++||+||+.+.. ...+........++..+ ++||+|.+.
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~~l--IlTKlDet~ 154 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGIDGL--ILTKLDETA 154 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTCEE--EEESTTSSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCceE--EEEeecCCC
Confidence 1245679999999955442 22221 1225789999999987643 33355556666788854 599999974
No 375
>KOG1533|consensus
Probab=98.24 E-value=4.8e-06 Score=76.11 Aligned_cols=124 Identities=23% Similarity=0.345 Sum_probs=72.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhh-------------------cCceEEeeE--------
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKA-------------------RGITINIAH-------- 100 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~-------------------~g~Ti~~~~-------- 100 (463)
.+++|++||||||.++.++......|+..... ++|...+... .+...+.+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV--NLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV--NLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEE--ecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHH
Confidence 57899999999999999998888888754332 1222211111 111111000
Q ss_pred -------EEEecCCeeEEEEeCCChhh------hHHHHHhhcccCCEEEEEEeCCCCCc--------HHHHHHHHHHHHc
Q psy3124 101 -------VEYSTNTRHYAHTDCPGHAD------YIKNMISGASQMDGAIVVVAASEGQM--------PQTREHLLLSKQI 159 (463)
Q Consensus 101 -------~~~~~~~~~i~liDtPGh~~------f~~~~~~~~~~aD~ailVVda~~g~~--------~qt~e~l~~~~~l 159 (463)
..++....++.++|+||+.. -+...++.+...|+-+.+|.-.+... ....-.+.-+..+
T Consensus 83 ~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m 162 (290)
T KOG1533|consen 83 ANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM 162 (290)
T ss_pred hhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh
Confidence 01122356899999999544 35666666666777666554332211 1112223344557
Q ss_pred CCCeEEEEEeccCcc
Q psy3124 160 GIDNVVVYVNKADLV 174 (463)
Q Consensus 160 ~ip~iivvvNKiD~~ 174 (463)
..||+ =|+.|+|+.
T Consensus 163 elphV-NvlSK~Dl~ 176 (290)
T KOG1533|consen 163 ELPHV-NVLSKADLL 176 (290)
T ss_pred cccch-hhhhHhHHH
Confidence 88976 689999987
No 376
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.23 E-value=4.7e-06 Score=72.33 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
......+..+|.+++|+|++++...+..+....+... +.| +++|+||+|+.+++... ++.+.++..+ .
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~~~~~~----~~~~~~~~~~-----~ 72 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK-NILLLNKADLLTEEQRK----AWAEYFKKEG-----I 72 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc-EEEEEechhcCCHHHHH----HHHHHHHhcC-----C
Confidence 3456778899999999999988766655656666555 777 88999999998654322 3334444433 4
Q ss_pred cEEEccchhh
Q psy3124 201 PFVFGSALLA 210 (463)
Q Consensus 201 pvi~~Sa~~~ 210 (463)
+++++||.++
T Consensus 73 ~ii~iSa~~~ 82 (141)
T cd01857 73 VVVFFSALKE 82 (141)
T ss_pred eEEEEEecCC
Confidence 6899999876
No 377
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.23 E-value=4.2e-06 Score=73.87 Aligned_cols=82 Identities=24% Similarity=0.197 Sum_probs=55.9
Q ss_pred CEEEEEEeCCCCCcHHHHHHH-HHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhc
Q psy3124 133 DGAIVVVAASEGQMPQTREHL-LLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLAL 211 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l-~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~ 211 (463)
|.+++|+|+.++......... ..+...+.| +|+|+||+|+.+++..... +.. +.... ..+++++||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~~~~~~~~---~~~-~~~~~----~~~ii~vSa~~~- 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKK-LILVLNKADLVPKEVLRKW---LAY-LRHSY----PTIPFKISATNG- 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCC-EEEEEechhcCCHHHHHHH---HHH-HHhhC----CceEEEEeccCC-
Confidence 789999999886654443333 355566777 8899999999865432221 111 22221 246899999999
Q ss_pred cCCCCCCCCccHHHHHHHhhhc
Q psy3124 212 QGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 212 ~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.++++|++.|...
T Consensus 71 ---------~gi~~L~~~i~~~ 83 (155)
T cd01849 71 ---------QGIEKKESAFTKQ 83 (155)
T ss_pred ---------cChhhHHHHHHHH
Confidence 8999999988664
No 378
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.19 E-value=2.8e-06 Score=75.21 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=38.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
...+|+++|.+|+|||||+|+|.+... .......|.|........ +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV---------------CKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc---------------eeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 357899999999999999999975311 111223466665443332 345899999993
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.18 E-value=5e-06 Score=81.16 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=68.6
Q ss_pred eCCChhh-hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 114 DCPGHAD-YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 114 DtPGh~~-f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
--|||.. -.+++...+..+|.+++|+||+.+......+...... +.| +++|+||+|+++....+ +..+.++.
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp-~iiVlNK~DL~~~~~~~----~~~~~~~~ 78 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKP-RLLILNKSDLADPEVTK----KWIEYFEE 78 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCC-EEEEEEchhcCCHHHHH----HHHHHHHH
Confidence 3588854 4566777889999999999998876544433333322 566 78999999998653222 22233332
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+ .+++++||.++ .++.+|++.|...++
T Consensus 79 ~~-----~~vi~vSa~~~----------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QG-----IKALAINAKKG----------QGVKKILKAAKKLLK 106 (287)
T ss_pred cC-----CeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 22 56899999998 889999988877554
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.17 E-value=1.3e-05 Score=70.22 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=63.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccc------cc----c-CCCh--h-hhhcCceEEeeEE------------
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITF------DQ----I-DRAP--E-EKARGITINIAHV------------ 101 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~------~~----~-d~~~--~-e~~~g~Ti~~~~~------------ 101 (463)
|+++|..|+||||++..|.......|....... .. . +... + ....+........
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 789999999999999999877655543211100 00 0 0000 0 0011211111000
Q ss_pred ----EEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 102 ----EYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 102 ----~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
..+..+..+.||||||... .....+..||.+++|+....+. ....+ ....+..-. ++++||+|
T Consensus 82 ~~~~~~~~~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D---~y~~~-k~~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGD---DIQAI-KAGIMEIAD-IVVVNKAD 148 (148)
T ss_pred HHHHHHHhcCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchh---HHHHh-hhhHhhhcC-EEEEeCCC
Confidence 0012367899999999653 3345678899999999886321 21111 112233333 47899998
No 381
>KOG1954|consensus
Probab=98.15 E-value=2.5e-05 Score=75.90 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH---hcCccccc--cccccCCChhhhhcCceEEee-EEEEec--------------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA---KIGKSKFI--TFDQIDRAPEEKARGITINIA-HVEYST-------------- 105 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~---~~g~~~~~--~~~~~d~~~~e~~~g~Ti~~~-~~~~~~-------------- 105 (463)
.-|.++|.-..||||+++.|+..-. ..|.++.. ...+|.-..++...|.+.-+. ...|..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 4589999999999999999976532 12222211 111233334444445554332 111110
Q ss_pred ---C---CeeEEEEeCCChhh-----------hHHHHHhhcccCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEE
Q psy3124 106 ---N---TRHYAHTDCPGHAD-----------YIKNMISGASQMDGAIVVVAASE-GQMPQTREHLLLSKQIGIDNVVVY 167 (463)
Q Consensus 106 ---~---~~~i~liDtPGh~~-----------f~~~~~~~~~~aD~ailVVda~~-g~~~qt~e~l~~~~~l~ip~iivv 167 (463)
. -..++|+||||.-. |..-..-.+..+|.++|+.|+.. .+...+.+.+..++...-+ +=||
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVV 217 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVV 217 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEE
Confidence 0 13689999999533 33333344567999999999975 4567888888888877766 7789
Q ss_pred EeccCcccHHHHHHHHHH
Q psy3124 168 VNKADLVDREIMELVELE 185 (463)
Q Consensus 168 vNKiD~~~~~~~~~i~~~ 185 (463)
+||.|.++...+-.+.-.
T Consensus 218 LNKADqVdtqqLmRVyGA 235 (532)
T KOG1954|consen 218 LNKADQVDTQQLMRVYGA 235 (532)
T ss_pred eccccccCHHHHHHHHHH
Confidence 999999977654444433
No 382
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.14 E-value=5.2e-05 Score=68.52 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=60.0
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
..+.+.++|||+... ......+..+|.+++|+.+.......+.+.+..++..+++ +.+|+||+|.... ..++
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~-----~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINKYDLNDE-----IAEE 162 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc-----hHHH
Confidence 567899999996533 2445667889999999999876666777777888888988 6789999997532 1235
Q ss_pred HHHHHHHcC
Q psy3124 186 VRDVLTAYG 194 (463)
Q Consensus 186 i~~~l~~~g 194 (463)
+.++++..+
T Consensus 163 ~~~~~~~~~ 171 (179)
T cd03110 163 IEDYCEEEG 171 (179)
T ss_pred HHHHHHHcC
Confidence 566666655
No 383
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.14 E-value=3.4e-05 Score=76.32 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=54.4
Q ss_pred EEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cCCCeE
Q psy3124 100 HVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-----------MPQTREHLLLSKQ----IGIDNV 164 (463)
Q Consensus 100 ~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-----------~~qt~e~l~~~~~----l~ip~i 164 (463)
...|...+..+.++|++|+....+.+......++++++|||.++-. +..+.+.+..+.. .+.| +
T Consensus 153 ~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~p-i 231 (317)
T cd00066 153 ETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTS-I 231 (317)
T ss_pred EEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCC-E
Confidence 3445667788999999999999999999999999999999988631 1223322222221 3567 9
Q ss_pred EEEEeccCcc
Q psy3124 165 VVYVNKADLV 174 (463)
Q Consensus 165 ivvvNKiD~~ 174 (463)
++++||.|+.
T Consensus 232 ll~~NK~D~f 241 (317)
T cd00066 232 ILFLNKKDLF 241 (317)
T ss_pred EEEccChHHH
Confidence 9999999975
No 384
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.13 E-value=4.1e-06 Score=75.25 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=40.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
...+++++|.+++|||||+|+|++... .......|+|.......+ +..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~---------------~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA---------------CNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc---------------ceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 357899999999999999999986411 111223477776655544 246899999993
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.11 E-value=9.1e-06 Score=77.39 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=61.5
Q ss_pred hhcccCCEEEEEEeCCCCC--cHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEE
Q psy3124 127 SGASQMDGAIVVVAASEGQ--MPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVF 204 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~--~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~ 204 (463)
..++++|.+++|.|+.+.. +....+.+..+...++| +++|+||+|+.+..... .+..+.++..+ ++++.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~~~~~---~~~~~~~~~~g-----~~v~~ 102 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE-PIIVLNKIDLLDDEDME---KEQLDIYRNIG-----YQVLM 102 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECcccCCCHHHH---HHHHHHHHHCC-----CeEEE
Confidence 3578899999999998654 34455566666677888 77899999997533222 12223333333 67999
Q ss_pred ccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 205 GSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 205 ~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+||+++ .++++|++.|..
T Consensus 103 ~SAktg----------~gi~eLf~~l~~ 120 (245)
T TIGR00157 103 TSSKNQ----------DGLKELIEALQN 120 (245)
T ss_pred EecCCc----------hhHHHHHhhhcC
Confidence 999999 899999887643
No 386
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.11 E-value=3.1e-06 Score=74.55 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
..++++|++|+|||||+|+|....... .....+...+|........-+..+. ...+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~----------t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK----------TGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS--------------S--------------SEEEEEETT-SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh----------hhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCcc
Confidence 678999999999999999997652111 1111122223332222222233322 4689999998776
No 387
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=1.5e-05 Score=79.61 Aligned_cols=126 Identities=20% Similarity=0.160 Sum_probs=73.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh---hhh------hcCceEEeeEE---------EEe-c
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP---EEK------ARGITINIAHV---------EYS-T 105 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e~------~~g~Ti~~~~~---------~~~-~ 105 (463)
...|+++|+.|+||||++..|...+...|..-... ..|... .|. ..|+.+....- .+. .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI--~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI--TTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE--ecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 47899999999999999999987665544221111 122211 111 12233221100 001 1
Q ss_pred CCeeEEEEeCCChhh----hHHHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 106 NTRHYAHTDCPGHAD----YIKNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 106 ~~~~i~liDtPGh~~----f~~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+..+.||||||... .+.++...+ ...|..+||+||+.+.. ...+.+......++.. +++||+|...
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~idg--lI~TKLDET~ 391 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDG--IVFTKFDETA 391 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCCCE--EEEEcccCCC
Confidence 146899999999643 344443333 34688899999975432 2234444445577775 4689999974
No 388
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.10 E-value=4.1e-05 Score=61.52 Aligned_cols=67 Identities=27% Similarity=0.418 Sum_probs=52.5
Q ss_pred eeeeEEEEecCCC-ceEEEEEEecccccCCCEEEEecCC-------ceeeEEEEEEeec----cccceEEccCCeEEEE
Q psy3124 246 ILPIDNAIGVPGR-GSVCIGTIKQGTIKRNDEAELLGFN-------SKFTCTISEIQVF----QKKVSEARAGDNVGVL 312 (463)
Q Consensus 246 ~~~I~~~~~~~~~-G~vv~G~v~~G~l~~gd~v~i~~~~-------~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~ 312 (463)
.+.|+++...+.. |.+.++||.+|+|++||.|.+...+ .....+|..|... ..++++|.|||+|++.
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4578888888877 6789999999999999999885321 1234678888765 3589999999999874
No 389
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=1.7e-05 Score=79.26 Aligned_cols=85 Identities=27% Similarity=0.383 Sum_probs=61.8
Q ss_pred hcccCCEEEEEEeCCCCC-cH-HHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 128 GASQMDGAIVVVAASEGQ-MP-QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~-~~-qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
.++++|.+++|+|+.+.. .. +..+.+..+...++| +++|+||+|+++++..+ .+.+.+...| ++++++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~~~~~~----~~~~~~~~~g-----~~v~~i 155 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLE-IVLCLNKADLVSPTEQQ----QWQDRLQQWG-----YQPLFI 155 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEchhcCChHHHH----HHHHHHHhcC-----CeEEEE
Confidence 367899999999998654 22 445666667778888 77999999998654332 2233344444 468999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
||.++ .++++|++.|..
T Consensus 156 SA~tg----------~GI~eL~~~L~~ 172 (352)
T PRK12289 156 SVETG----------IGLEALLEQLRN 172 (352)
T ss_pred EcCCC----------CCHHHHhhhhcc
Confidence 99999 899999888753
No 390
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.08 E-value=2.8e-05 Score=71.51 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=51.9
Q ss_pred CeeEEEEeCC-ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCP-GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtP-Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
...+.++||- |.++|-+-+ ...+|.+|+|+|++..-....++.-.++..++++++.+|+||.|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4678899984 677776544 3568999999999875556667777888999998999999999875
No 391
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.07 E-value=3.2e-05 Score=79.31 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=72.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChh---------hhhcCceEEeeEEE---E--------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPE---------EKARGITINIAHVE---Y-------- 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~~---~-------- 103 (463)
+...|.++|.+|+||||++..|...+.+.|...... ..|.... ....++.+...... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV--~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV--AADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467899999999999999999987766655321111 1121100 11123332211000 0
Q ss_pred ecCCeeEEEEeCCChhhhHHHH------HhhcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccCccc
Q psy3124 104 STNTRHYAHTDCPGHADYIKNM------ISGASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 104 ~~~~~~i~liDtPGh~~f~~~~------~~~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD~~~ 175 (463)
......+.||||||.......+ +..+..+|.++||+||..|. ...+..... ..+++. -+++||+|...
T Consensus 172 ~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~~l~i~--gvIlTKlD~~a 246 (437)
T PRK00771 172 KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHEAVGIG--GIIITKLDGTA 246 (437)
T ss_pred HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHhcCCCC--EEEEecccCCC
Confidence 0123479999999965543332 23345689999999998862 222222222 223443 46799999863
No 392
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.05 E-value=0.00013 Score=77.82 Aligned_cols=182 Identities=19% Similarity=0.300 Sum_probs=127.9
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEe-ccCcccHHHHHHHHHHHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVN-KADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvN-KiD~~~~~~~~~i~~~i~~~l~ 191 (463)
-|+-|..+-+.+.+..+...+.-+=|+.+.-|. -|+....+|...+ -+|+..| |.+ . ++++..+
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~--i~~~Dv~~a~~~~--a~i~~Fnv~~~---~--------~~~~~a~ 456 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG--ITETDISLASASN--AIIIGFNVRPD---A--------TAKNVAE 456 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecCC--CchhhHHHHHhcC--CEEEEEecCCC---H--------HHHHHHH
Confidence 488898888888888887778788888876664 3555556666665 2566666 222 1 2333344
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccc
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTI 271 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l 271 (463)
+.| ++++.-+-.. .-++++.+++...++ |.....---...|..+|..+..|.++..+|..|+|
T Consensus 457 ~~~-----v~i~~~~iIY-----------~l~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i 519 (587)
T TIGR00487 457 AEN-----VDIRYYSVIY-----------KLIDEIRAAMKGMLD-PEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVI 519 (587)
T ss_pred HcC-----CeEEEeChHH-----------HHHHHHHHHHHhccC-cceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEE
Confidence 433 5565544333 234455555555333 33222223346678999998889999999999999
Q ss_pred cCCCEEEEecCCce-eeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 272 KRNDEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 272 ~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
+.|..+.++..+.. ...+|.||+.++++|+++..|+-||+.+.+. .+++.||+|-
T Consensus 520 ~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 520 KRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred ecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 99999999876543 3578999999999999999999999999864 7899999885
No 393
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.04 E-value=6.7e-05 Score=67.44 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=73.4
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhc--CceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHh
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKAR--GITINIAHVEYSTNTRHYAHTDCPGHADYIKNMIS 127 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~ 127 (463)
+-+..|+||||+.-.|...+.+.|..-... .+|........ +..........+.-...+.++|||+.... ....
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv--D~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~ 80 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI--DADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFIT 80 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE--eCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHH
Confidence 344689999999999988777666421110 01110000000 00000000000011117999999986543 3455
Q ss_pred hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 128 GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+..+|.+|+|+++.......+...+..+...+.+.+.+++|++|..
T Consensus 81 ~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 81 AIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred HHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 67889999999999876666666767777777777788999999875
No 394
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.00 E-value=1.1e-05 Score=71.32 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=40.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
...+++++|.+++|||||+|.|++.... ......+.|.......+ +..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~---------------~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKL---------------KVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccc---------------cccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 4578999999999999999999864210 11223456666554444 246899999994
No 395
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.95 E-value=5.3e-05 Score=71.13 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=56.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh--HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA--AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~--~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
+.+...|+++|+.++|||||+|.|.+.. ...+. . .....+|+-+....... ..+..+.++||||..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~----------~-~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~ 71 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD----------T-SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTD 71 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC----------C-CCCCccceEEEeccccC-CCcceEEEEecCCcC
Confidence 4567889999999999999999998751 11111 1 11223344332221111 245789999999964
Q ss_pred hh------HHHHHhhccc--CCEEEEEEeCCC
Q psy3124 120 DY------IKNMISGASQ--MDGAIVVVAASE 143 (463)
Q Consensus 120 ~f------~~~~~~~~~~--aD~ailVVda~~ 143 (463)
+. ....+.++.. +|++|+.++...
T Consensus 72 ~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 72 GRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred ccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 42 2223455555 899999988754
No 396
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.94 E-value=0.00034 Score=76.06 Aligned_cols=182 Identities=14% Similarity=0.197 Sum_probs=127.5
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
-|+-|...-+...+..+.....-+=|+.+.-|.. |..-+.+|.+.+ -+|+..|=- ++. .+++..+.
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~i--t~~Dv~lA~~~~--a~ii~Fnv~--~~~--------~~~~~a~~ 614 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLGEV--TETDVEFASTTN--AEILAFNTN--LAP--------GAKKAARK 614 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCC--CHHHHHHHHhcC--CEEEEeeCC--CCH--------HHHHHHHH
Confidence 4999988888888888877777788888766643 444555666665 256666621 111 22333333
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEeccccc
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIK 272 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~ 272 (463)
.| +++..-+-.. .-++++-+++...++ |.......-++.|..+|.++. |.++.++|.+|+|+
T Consensus 615 ~~-----v~i~~~~iIY-----------~lid~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~i~ 676 (742)
T CHL00189 615 LN-----IIIKEYQVIY-----------DLLEYIEALMEDLLD-PEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGKIT 676 (742)
T ss_pred cC-----CEEEEeChHH-----------HHHHHHHHHHhhccC-ceeeeeeceeEEeeEEEecCC-CEEEEEEEecCEEe
Confidence 33 4555444333 234455555555333 333333444677899999887 99999999999999
Q ss_pred CCCEEEEecCCce-eeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 273 RNDEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 273 ~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
.|..+.++..+.. ...+|.||..+..+|.++..|+-||+.+.+ -.+++.||+|-
T Consensus 677 ~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~--~~d~~~gD~ie 731 (742)
T CHL00189 677 KNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEE--FQLWQSGDKIH 731 (742)
T ss_pred cCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeC--CCCCCcCCEEE
Confidence 9999999876654 367899999999999999999999999974 57899999885
No 397
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.94 E-value=0.00035 Score=76.68 Aligned_cols=182 Identities=19% Similarity=0.310 Sum_probs=127.3
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEe-ccCcccHHHHHHHHHHHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVN-KADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvN-KiD~~~~~~~~~i~~~i~~~l~ 191 (463)
-|+-|...-+...+..+..-+.-+=|+.+.-|.. |..-+.++.+.+ -+|+..| |.| . .+++..+
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~i--t~~Dv~la~~~~--a~ii~Fnv~~~---~--------~~~~~a~ 658 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAI--TESDVTLAAASN--AIIIGFNVRPD---A--------KARKLAE 658 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCCC--CHHHHHHHHhcC--CEEEEEcCCCC---H--------HHHHHHH
Confidence 3888888888888888877777888888766643 333445555544 2556666 222 1 2233333
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccc
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTI 271 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l 271 (463)
..+ +.+..-+-.. .-++++.+++...++ |.....---...|..+|.++..|.++.++|..|.|
T Consensus 659 ~~~-----v~i~~~~iIY-----------~l~d~~~~~~~~~l~-~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i 721 (787)
T PRK05306 659 QEG-----VDIRYYSIIY-----------DLIDDVKAAMSGMLE-PEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKI 721 (787)
T ss_pred HcC-----CEEEEeChHH-----------HHHHHHHHHHhhccC-chhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEE
Confidence 333 4555544333 234555555555333 33322223356788999999999999999999999
Q ss_pred cCCCEEEEecCCce-eeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 272 KRNDEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 272 ~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
+.+..+.++..+.. +..+|.||..+..+|.++..|+-||+.+.+. ++++.||+|-
T Consensus 722 ~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 722 KRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred ecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 99999999876643 3678999999999999999999999999854 7999999884
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=4.1e-05 Score=75.13 Aligned_cols=82 Identities=29% Similarity=0.330 Sum_probs=57.8
Q ss_pred cccCCEEEEEEeCCCCCc-H-HHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 129 ASQMDGAIVVVAASEGQM-P-QTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 129 ~~~aD~ailVVda~~g~~-~-qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
++.+|.+++|+|+.+... . ...+.+..+...++| +++|+||+|+. +.... .+..+.++..+ .|++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~----~~~~~~~~~~g-----~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK-PIIVLNKIDLLDDLEEA----RELLALYRAIG-----YDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCCHHHH----HHHHHHHHHCC-----CeEEEE
Confidence 678999999999976532 2 224455566778888 77899999997 32221 12333344444 579999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHh
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDAL 230 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L 230 (463)
||+++ .++++|++.|
T Consensus 148 SA~~g----------~gi~~L~~~l 162 (298)
T PRK00098 148 SAKEG----------EGLDELKPLL 162 (298)
T ss_pred eCCCC----------ccHHHHHhhc
Confidence 99998 8999888776
No 399
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=5.6e-05 Score=75.26 Aligned_cols=127 Identities=17% Similarity=0.110 Sum_probs=69.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh---h------hhhcCceEEeeEE--E-------Ee-
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP---E------EKARGITINIAHV--E-------YS- 104 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~------e~~~g~Ti~~~~~--~-------~~- 104 (463)
+...++++|+.|+||||++..|.......|...... ..|... . -..-++.+....- . +.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI--taDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI--TTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE--eCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457899999999999999999986655444211110 112110 0 0111222211100 0 00
Q ss_pred cCCeeEEEEeCCChhh----hHHHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 105 TNTRHYAHTDCPGHAD----YIKNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~----f~~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..++.+.||||||... .+.++.... ...|..+||+++.... .+..+.+......++.. +++||+|...
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~-~d~~~i~~~f~~l~i~g--lI~TKLDET~ 356 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS-ADVMTILPKLAEIPIDG--FIITKMDETT 356 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH-HHHHHHHHhcCcCCCCE--EEEEcccCCC
Confidence 1356899999999743 344433322 2457888888874322 12223333334556663 5699999973
No 400
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.92 E-value=5.6e-05 Score=68.37 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCc-cccccccccCCC-hhh--hhcCceEE-eeE--EE------E--------ec
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK-SKFITFDQIDRA-PEE--KARGITIN-IAH--VE------Y--------ST 105 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~-~~~~~~~~~d~~-~~e--~~~g~Ti~-~~~--~~------~--------~~ 105 (463)
-+.+.|..|||||||+++|.+ ....|. .....+..-+.. ..+ ...|.++. +.. .. + ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 468899999999999999986 222222 211111111110 111 11233321 111 10 0 11
Q ss_pred C--CeeEEEEeCCChhhhHHH-----HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH
Q psy3124 106 N--TRHYAHTDCPGHADYIKN-----MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE 177 (463)
Q Consensus 106 ~--~~~i~liDtPGh~~f~~~-----~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~ 177 (463)
. ...+.||.+.|..+-..- ........+.++.||||..-........ .....+..-.+ |++||+|+++++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~-~~~~Qi~~ADv-IvlnK~D~~~~~ 157 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPE-LLREQIAFADV-IVLNKIDLVSDE 157 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCH-HHHHHHCT-SE-EEEE-GGGHHHH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchh-hhhhcchhcCE-EEEeccccCChh
Confidence 2 357889999995443222 1222344689999999965321222211 22333333435 789999999765
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=97.92 E-value=0.00012 Score=74.86 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=69.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhc-CccccccccccCCChh---------hhhcCceEEeeEE-----------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRAPE---------EKARGITINIAHV----------- 101 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~----------- 101 (463)
.+...|.++|+.|+||||++..|....... |...... ..|.... -...|+.+.....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV--~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV--AADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE--EccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 346788999999999999999998766655 4322111 1121100 1122333221100
Q ss_pred --EEecCCeeEEEEeCCChhh----hHHHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccC
Q psy3124 102 --EYSTNTRHYAHTDCPGHAD----YIKNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKAD 172 (463)
Q Consensus 102 --~~~~~~~~i~liDtPGh~~----f~~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD 172 (463)
.....++.+.|+||||... ...++.. .+..+|.++||+|+..| ....+..... ...++. -+++||+|
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~--giIlTKlD 251 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLT--GVILTKLD 251 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCC--EEEEeCcc
Confidence 0012356799999999543 3332211 22357888999999764 1222222222 234554 35789999
Q ss_pred cc
Q psy3124 173 LV 174 (463)
Q Consensus 173 ~~ 174 (463)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 75
No 402
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.91 E-value=1.5e-05 Score=72.81 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
.+++++|.+|+|||||+|+|.+......+. ..........|.|.+.....+.. .+.++||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~-------~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL-------KDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc-------ccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 579999999999999999997652211100 00112223347888876665532 5899999994
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00019 Score=74.52 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=66.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCc-cccccccccCCCh---hh------hhcCceEEeeEEE-------EecC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGK-SKFITFDQIDRAP---EE------KARGITINIAHVE-------YSTN 106 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~-~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~~-------~~~~ 106 (463)
....|+++|+.|+||||++..|.......+. ..... -..|... .| ..-|+.+....-. -...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaL-IdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVAL-VTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEE-EecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3568999999999999999999765443321 11100 0112211 11 1112222111000 0124
Q ss_pred CeeEEEEeCCChhhhHHHH------HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 107 TRHYAHTDCPGHADYIKNM------ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~------~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
++.+.||||||....-... +.... ....+||+++..+... ..+.+......++ .-+++||+|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~D-l~eii~~f~~~~~--~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSD-LDEVVRRFAHAKP--QGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhH-HHHHHHHHHhhCC--eEEEEecCcCcc
Confidence 5789999999964432221 12222 3456888998765322 2233333333443 447899999963
No 404
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.90 E-value=5.7e-05 Score=73.71 Aligned_cols=83 Identities=28% Similarity=0.284 Sum_probs=58.4
Q ss_pred cccCCEEEEEEeCCCCC-c-HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEcc
Q psy3124 129 ASQMDGAIVVVAASEGQ-M-PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGS 206 (463)
Q Consensus 129 ~~~aD~ailVVda~~g~-~-~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~S 206 (463)
++.+|.+++|+|+.++. . ....+++..+...++| +++|+||+|+.++.... .........+ .|++++|
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~----~~~~~~~~~g-----~~v~~vS 145 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE-PVIVLTKADLLDDEEEE----LELVEALALG-----YPVLAVS 145 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEEHHHCCChHHHH----HHHHHHHhCC-----CeEEEEE
Confidence 57899999999998875 3 3334566667778888 77899999998542211 1111222223 6899999
Q ss_pred chhhccCCCCCCCCccHHHHHHHhh
Q psy3124 207 ALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 207 a~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
|+++ .++++|.+.|.
T Consensus 146 A~~g----------~gi~~L~~~L~ 160 (287)
T cd01854 146 AKTG----------EGLDELREYLK 160 (287)
T ss_pred CCCC----------ccHHHHHhhhc
Confidence 9999 88888877664
No 405
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.88 E-value=6.8e-05 Score=66.44 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=36.6
Q ss_pred CeeEEEEeCCChhh---hHHH-----HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 107 TRHYAHTDCPGHAD---YIKN-----MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 107 ~~~i~liDtPGh~~---f~~~-----~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
...+.++||||..+ .... ........|.++.|||+........... .......--.+ |++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~-~~~~Qi~~ad~-ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQT-EAQSQIAFADR-ILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccH-HHHHHHHHCCE-EEEecccC
Confidence 45678999999643 2221 2234456899999999975332110011 11222222324 68999996
No 406
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.87 E-value=2.2e-05 Score=68.09 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
.+++++|.+++|||||+|+|++...-. .....|.|.......+ + ..+.++||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~---------------~~~~~~~~~~~~~~~~--~-~~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVS---------------VSATPGKTKHFQTIFL--T-PTITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee---------------eCCCCCcccceEEEEe--C-CCEEEEECCCc
Confidence 389999999999999999997542110 0111234444333333 2 26899999996
No 407
>PRK01889 GTPase RsgA; Reviewed
Probab=97.86 E-value=7e-05 Score=75.27 Aligned_cols=83 Identities=24% Similarity=0.262 Sum_probs=60.4
Q ss_pred cccCCEEEEEEeCCCCCcH-HHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 129 ASQMDGAIVVVAASEGQMP-QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 129 ~~~aD~ailVVda~~g~~~-qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
++++|.+++|+++..+... .....|..+...++++ ++|+||+|+++.. +...+++... . ..+|++++|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~~--~~~~~~~~~~----~---~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEP-VIVLTKADLCEDA--EEKIAEVEAL----A---PGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCE-EEEEEChhcCCCH--HHHHHHHHHh----C---CCCcEEEEEC
Confidence 5778999999999866665 5556777788899995 6799999998541 1122233222 1 2478999999
Q ss_pred hhhccCCCCCCCCccHHHHHHHhh
Q psy3124 208 LLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 208 ~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.++ .++++|.++|.
T Consensus 180 ~~g----------~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDG----------EGLDVLAAWLS 193 (356)
T ss_pred CCC----------ccHHHHHHHhh
Confidence 998 89888888763
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.86 E-value=9.4e-05 Score=75.72 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=69.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChh---------hhhcCceEEeeEE------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPE---------EKARGITINIAHV------------ 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~------------ 101 (463)
+...+.++|++|+||||++..|..... ..|...... ..|.... ....|+.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV--~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV--ACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE--eccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 357889999999999999999977654 344321111 1121100 1112222221100
Q ss_pred -EEecCCeeEEEEeCCChhh----hHHHHH--hhcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccCc
Q psy3124 102 -EYSTNTRHYAHTDCPGHAD----YIKNMI--SGASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKADL 173 (463)
Q Consensus 102 -~~~~~~~~i~liDtPGh~~----f~~~~~--~~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD~ 173 (463)
.....++.+.|+||||... .+.++. .....+|.++||+|+..| ....++.... ...++.. +++||+|.
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~g--iIlTKlD~ 251 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTG--VVLTKLDG 251 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCE--EEEeCccC
Confidence 0012456799999999533 233221 123457899999999764 2233333222 3456653 56999997
Q ss_pred c
Q psy3124 174 V 174 (463)
Q Consensus 174 ~ 174 (463)
.
T Consensus 252 ~ 252 (428)
T TIGR00959 252 D 252 (428)
T ss_pred c
Confidence 5
No 409
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.84 E-value=0.00016 Score=59.38 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=67.1
Q ss_pred EEEEc-CCCCCHHHHHHHHHhhhHhc-CccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 48 VGTIG-HVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 48 I~i~G-~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
|+++| -.|+||||+.-.|....... |..-. ..|..+. . +..+.++|||+..... .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~----l~d~d~~----------------~-~~D~IIiDtpp~~~~~--~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL----LVDLDLQ----------------F-GDDYVVVDLGRSLDEV--S 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE----EEECCCC----------------C-CCCEEEEeCCCCcCHH--H
Confidence 34444 47899999999997766554 43211 1111111 1 1178999999976543 3
Q ss_pred HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC---eEEEEEec
Q psy3124 126 ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGID---NVVVYVNK 170 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip---~iivvvNK 170 (463)
...+..+|.+++|++++..-...+.+.+..+...+.+ ++.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4566789999999998876666777777777777654 68788886
No 410
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.83 E-value=8.6e-05 Score=74.83 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=66.5
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH-HHHHHHHHHHHHHHHcCCC
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE-IMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~-~~~~i~~~i~~~l~~~g~~ 196 (463)
.++|...+......+|.+++|+|+.+....-..+....+ .+.| +++|+||+|+.+.. ..+.+.+.+++.++..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 567776555555788999999999764422111211111 1455 88999999997432 2344455566666766653
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
. ..++++||+++ .++++|++.|..
T Consensus 127 ~--~~i~~vSAk~g----------~gv~eL~~~l~~ 150 (360)
T TIGR03597 127 P--VDIILVSAKKG----------NGIDELLDKIKK 150 (360)
T ss_pred c--CcEEEecCCCC----------CCHHHHHHHHHH
Confidence 2 24889999999 899999999876
No 411
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00088 Score=68.75 Aligned_cols=104 Identities=18% Similarity=0.354 Sum_probs=81.2
Q ss_pred cHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce-eeEEEEEEeeccccc
Q psy3124 222 SIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK-FTCTISEIQVFQKKV 300 (463)
Q Consensus 222 ~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v 300 (463)
.++++..++...+. |.....---...+-.+|.+++.|.++...|..|.++.|..+.+...+.- ...+|.||+.+++++
T Consensus 392 lied~~~~~~g~l~-p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv 470 (509)
T COG0532 392 LIEDVEAAMKGMLE-PEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDV 470 (509)
T ss_pred HHHHHHHHHHhccc-hhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccH
Confidence 45666666666443 3332222224567788999999999999999999999999999854432 357899999999999
Q ss_pred eEEccCCeEEEEeccccccCcccceEEe
Q psy3124 301 SEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 301 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
.++.+|+-|++.+++ -.+++.||+|-
T Consensus 471 ~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 471 KEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred hHhccCcEEEEEecC--cccCCCCCEEE
Confidence 999999999999986 67899999884
No 412
>KOG0447|consensus
Probab=97.80 E-value=0.00038 Score=70.83 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhh-hHhcCcccc--------------------ccc-cccCCChhh---------
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKV-AAKIGKSKF--------------------ITF-DQIDRAPEE--------- 89 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~-~~~~g~~~~--------------------~~~-~~~d~~~~e--------- 89 (463)
...-.++|+++|...||||+.++.+... +...|.+.. +.. ...|..+++
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 3334679999999999999999998643 222222110 000 011222221
Q ss_pred -------hhcCceEEeeEEEEecCC---eeEEEEeCCChhh-------------hHHHHHhhcccCCEEEEEEeCCC-C-
Q psy3124 90 -------KARGITINIAHVEYSTNT---RHYAHTDCPGHAD-------------YIKNMISGASQMDGAIVVVAASE-G- 144 (463)
Q Consensus 90 -------~~~g~Ti~~~~~~~~~~~---~~i~liDtPGh~~-------------f~~~~~~~~~~aD~ailVVda~~-g- 144 (463)
...|.|++...+.....+ .+..++|.||... ........+.+++++||||.-.. .
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 224666655444443322 4688999999533 23334456788999999984221 1
Q ss_pred CcHHHHHHHHHHHHcCCCeEEEEEeccCcccH
Q psy3124 145 QMPQTREHLLLSKQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 145 ~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~ 176 (463)
.....-.....+.-+|-. -|+|+||.|++.+
T Consensus 464 ERSnVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred hhhhHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 112222344556667866 6799999999743
No 413
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.80 E-value=0.00039 Score=60.12 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=72.8
Q ss_pred EEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhhc
Q psy3124 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGA 129 (463)
Q Consensus 50 i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~ 129 (463)
.-+..|+||||+.-.|...+...|..-.. .|... .+-.+ .+.+.++|+|+..+ ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~----vd~D~----~~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLL----LDADL----GLANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEE----EECCC----CCCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 44678999999998887766554432111 11110 00001 16799999998643 3334667
Q ss_pred ccCCEEEEEEeCCCCCcHHHHHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 130 SQMDGAIVVVAASEGQMPQTREHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 130 ~~aD~ailVVda~~g~~~qt~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
..+|.+++|++++..-...+...+..+.. .+.+++.+++|+++.. ...+++.+.+.+.+..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r 126 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR 126 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 88999999999976544455555544433 3445578999999753 2233444455554443
No 414
>PRK12288 GTPase RsgA; Reviewed
Probab=97.79 E-value=2.3e-05 Score=78.20 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.++++|.+|+|||||+|+|.+... ..|..+ ....+.+.+|.....+.+... ..++||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is---------~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVS---------DNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeecccc---------CcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 479999999999999999975421 111111 011223334544444444322 359999997665
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00013 Score=74.39 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=69.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccc--cccccc-----cCCC-hhhhhcCceEEeeEE-------EEecCCe
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSK--FITFDQ-----IDRA-PEEKARGITINIAHV-------EYSTNTR 108 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~--~~~~~~-----~d~~-~~e~~~g~Ti~~~~~-------~~~~~~~ 108 (463)
...|+++|+.|+||||++..|.+... ..+... ...... .+.. ...+..|+......- .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999976421 111110 000000 0000 001112333321111 0123567
Q ss_pred eEEEEeCCChhhhHHHH---H---hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 109 HYAHTDCPGHADYIKNM---I---SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 109 ~i~liDtPGh~~f~~~~---~---~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+.+|||+|........ + ......+-.+||+||+.+.. ...+.+......++.. +++||+|...
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~--~I~TKlDEt~ 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHG--CIITKVDEAA 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCE--EEEEeeeCCC
Confidence 89999999965532221 1 22233567899999986432 1223334445577775 4689999974
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00026 Score=72.72 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCCh---h------hhhcCceEEeeEEE-------EecCC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAP---E------EKARGITINIAHVE-------YSTNT 107 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~---~------e~~~g~Ti~~~~~~-------~~~~~ 107 (463)
...++++|+.|+||||++..|..... ..+...... -..|... . -+..++.+...... -...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~l-i~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVAL-ITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEE-EECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 35899999999999999999976654 222111110 0122210 0 01123322211100 01235
Q ss_pred eeEEEEeCCChhhh-------HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHH
Q psy3124 108 RHYAHTDCPGHADY-------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIME 180 (463)
Q Consensus 108 ~~i~liDtPGh~~f-------~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~ 180 (463)
..+.||||||...+ +..++......+-+.||++++.+. ....+.+......++.. +++||+|....- .
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~~~--vI~TKlDet~~~--G 374 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPLDG--LIFTKLDETSSL--G 374 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCCCE--EEEecccccccc--c
Confidence 78999999997443 222323222345778999997643 22333334444556543 579999996331 1
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 181 LVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 181 ~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
.+..++...+ .|+.+++.
T Consensus 375 ----~i~~~~~~~~-----lPv~yit~ 392 (424)
T PRK05703 375 ----SILSLLIESG-----LPISYLTN 392 (424)
T ss_pred ----HHHHHHHHHC-----CCEEEEeC
Confidence 2333444433 57766653
No 417
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.77 E-value=4.9e-05 Score=75.81 Aligned_cols=84 Identities=25% Similarity=0.262 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEe---------------cCCee
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYS---------------TNTRH 109 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---------------~~~~~ 109 (463)
++++++|.+++|||||+++|++... ..+..++.. .+ ...+...+. .....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftT---i~-----------p~~g~v~v~d~r~d~L~~~~~~~~~~~a~ 68 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTT---IE-----------PNAGVVNPSDPRLDLLAIYIKPEKVPPTT 68 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCC---CC-----------CceeEEEechhHHHHHHHHhCCcCcCCce
Confidence 6799999999999999999998754 333322210 00 001111111 12235
Q ss_pred EEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCCC
Q psy3124 110 YAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 110 i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~ 143 (463)
+.++|.||... .-...+..++.+|++++||++.+
T Consensus 69 i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 69 TEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred EEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 78999999533 33445666788999999999864
No 418
>PRK12288 GTPase RsgA; Reviewed
Probab=97.77 E-value=0.00018 Score=71.97 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=60.2
Q ss_pred cccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 129 ASQMDGAIVVVAASEGQM-PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 129 ~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
++++|.+++|.+...... ....+.+..+...++| .++|+||+|+.+....+.+. +..+.+...+ ++++++||
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~~~~~~~-~~~~~y~~~g-----~~v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIE-PLIVLNKIDLLDDEGRAFVN-EQLDIYRNIG-----YRVLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCcHHHHHHH-HHHHHHHhCC-----CeEEEEeC
Confidence 567999999988765443 3334555667778888 67899999998643222222 2223333433 57999999
Q ss_pred hhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 208 LLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 208 ~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++ .++++|++.|..
T Consensus 191 ~tg----------~GideL~~~L~~ 205 (347)
T PRK12288 191 HTG----------EGLEELEAALTG 205 (347)
T ss_pred CCC----------cCHHHHHHHHhh
Confidence 999 899999998854
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00016 Score=69.58 Aligned_cols=127 Identities=21% Similarity=0.178 Sum_probs=72.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh--------hh-hhcCceEEeeEEE---------E-e
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP--------EE-KARGITINIAHVE---------Y-S 104 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~--------~e-~~~g~Ti~~~~~~---------~-~ 104 (463)
+..+++++|+.|+||||++..|.......+...... ..|... .. ...+..+....-. + .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i--~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI--TTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE--ecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 346899999999999999999977654433211100 112110 00 0112222111000 0 1
Q ss_pred cCCeeEEEEeCCChhh----hHHHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 105 TNTRHYAHTDCPGHAD----YIKNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~----f~~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..+..+.||||||... .+.++...+ ...|..+||+||+.+. .+..+.+......++.. +++||+|...
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~~~--~I~TKlDet~ 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDG--IVFTKFDETA 225 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCCCE--EEEEeecCCC
Confidence 1256899999999653 344443322 3468899999997532 22333444444567774 4799999984
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=7.5e-05 Score=75.49 Aligned_cols=126 Identities=19% Similarity=0.169 Sum_probs=70.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh-HhcCccccccccccCCChh---h------hhcCceEEeeE------EEEecCCe
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA-AKIGKSKFITFDQIDRAPE---E------KARGITINIAH------VEYSTNTR 108 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~~---e------~~~g~Ti~~~~------~~~~~~~~ 108 (463)
...++++|+.|+||||++..|.... ...|..-.. -..|.... + ...|+...... ..+...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~L--it~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSL--YTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE--ecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 4568999999999999999997643 333321110 01122100 0 11122221100 00012466
Q ss_pred eEEEEeCCChhh----hHHHHHhhcc-----cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 109 HYAHTDCPGHAD----YIKNMISGAS-----QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 109 ~i~liDtPGh~~----f~~~~~~~~~-----~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+.+|||||... .+..+...+. ...-.+||+||+.+.. +..+.+..-...++.. +++||+|...
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~g--lIlTKLDEt~ 373 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRR--ILLTKLDEAD 373 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCE--EEEEcccCCC
Confidence 899999999643 2333322221 2346899999987642 3344444456678775 4699999974
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00016 Score=73.05 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcC--ccccccccccCCCh---hh------hhcCceEEeeEEE-------EecC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIG--KSKFITFDQIDRAP---EE------KARGITINIAHVE-------YSTN 106 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g--~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~~-------~~~~ 106 (463)
...|+++|+.|+||||.+..|.......+ .+.....-..|... .| ..-|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 46899999999999999999976544321 00000000122210 00 1113332221110 0124
Q ss_pred CeeEEEEeCCChhhh----HHHHHhhcc---cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 107 TRHYAHTDCPGHADY----IKNMISGAS---QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f----~~~~~~~~~---~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
++.+.||||||.... +..+...+. ..+-.+||+||+.+.... .+.+.....+++.. +++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~~~~--~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFSYKT--VIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCCCCE--EEEEeccCCC
Confidence 678999999995432 333333332 223689999999874333 34555555567775 4699999974
No 422
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.74 E-value=6.3e-05 Score=67.53 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=39.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
..++++++|.+++|||||+++|.+.... ......|.|.......+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~---------------~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA---------------KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce---------------eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3478999999999999999999864110 011122556665554443 56899999995
No 423
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.73 E-value=6.8e-05 Score=73.22 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=40.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
...+++++|.+|+|||||+|+|++...- ......|+|........ +..+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~---------------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIA---------------KTGNRPGVTKAQQWIKL---GKGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcc---------------ccCCCCCeEEEEEEEEe---CCcEEEEECCCc
Confidence 4578999999999999999999764110 11112367777654433 346889999996
No 424
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.72 E-value=5.9e-05 Score=73.24 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=39.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
...+++++|.+|+|||||+|+|++.... ......|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~---------------~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVA---------------KVGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcc---------------ccCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 4578999999999999999999753110 01112356666554443 236899999996
No 425
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00028 Score=70.67 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=75.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC---hhh------hhcCceEEee-------------
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA---PEE------KARGITINIA------------- 99 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~e------~~~g~Ti~~~------------- 99 (463)
.+++..|.++|-.||||||.++.|...+.+.|......+ .|.. --| .+-++.+...
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa--aD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA--ADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEe--cccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHH
Confidence 566788999999999999999999887776554322111 1111 000 0111111100
Q ss_pred EEEEecCCeeEEEEeCCChhh----hHHHH--HhhcccCCEEEEEEeCCCCCcHHHHHHH--HHHHHcCCCeEEEEEecc
Q psy3124 100 HVEYSTNTRHYAHTDCPGHAD----YIKNM--ISGASQMDGAIVVVAASEGQMPQTREHL--LLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 100 ~~~~~~~~~~i~liDtPGh~~----f~~~~--~~~~~~aD~ailVVda~~g~~~qt~e~l--~~~~~l~ip~iivvvNKi 171 (463)
.-.+....+.+.|+||.|... .+.++ +.....+|-++||+||..| |..... ..-.++++-- |++||+
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itG--vIlTKl 249 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITG--VILTKL 249 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCce--EEEEcc
Confidence 001223456899999999433 34443 3345678999999999875 332222 2234456663 579999
Q ss_pred Cccc
Q psy3124 172 DLVD 175 (463)
Q Consensus 172 D~~~ 175 (463)
|-..
T Consensus 250 DGda 253 (451)
T COG0541 250 DGDA 253 (451)
T ss_pred cCCC
Confidence 9863
No 426
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.71 E-value=0.00049 Score=68.03 Aligned_cols=149 Identities=18% Similarity=0.185 Sum_probs=75.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCc-ccccccc----ccCCChhhhhcCceEEe--eEEEEec------------
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGK-SKFITFD----QIDRAPEEKARGITINI--AHVEYST------------ 105 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~-~~~~~~~----~~d~~~~e~~~g~Ti~~--~~~~~~~------------ 105 (463)
..-.++.|..|||||||+++|.... .|. .....+. ..|..-.+....-...+ +.++...
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~--~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhcc--cCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 4567899999999999999997541 121 1111110 11211111110111222 1111110
Q ss_pred -------CCeeEEEEeCCChhhhHHHHH--------hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEec
Q psy3124 106 -------NTRHYAHTDCPGHADYIKNMI--------SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNK 170 (463)
Q Consensus 106 -------~~~~i~liDtPGh~~f~~~~~--------~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNK 170 (463)
......+|.|.|..+-..-+. ......|.++.||||......... +-........-.+ |++||
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-~~~~~~Qi~~AD~-IvlnK 159 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGYADR-ILLTK 159 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-cHHHHHHHHhCCE-EEEec
Confidence 024578999999766432221 111235889999999864321111 1111122222324 78999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEcc
Q psy3124 171 ADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGS 206 (463)
Q Consensus 171 iD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~S 206 (463)
+|++++. +++.+.++.++ ...+++..+
T Consensus 160 ~Dl~~~~------~~~~~~l~~ln---p~a~i~~~~ 186 (318)
T PRK11537 160 TDVAGEA------EKLRERLARIN---ARAPVYTVV 186 (318)
T ss_pred cccCCHH------HHHHHHHHHhC---CCCEEEEec
Confidence 9999743 24555565544 346777644
No 427
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.71 E-value=0.00064 Score=67.91 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=45.9
Q ss_pred eeEEEEeCCChhhhHHHHHh-------hcccCCEEEEEEeCCCCCcHH------H--------------H--HHHHHHHH
Q psy3124 108 RHYAHTDCPGHADYIKNMIS-------GASQMDGAIVVVAASEGQMPQ------T--------------R--EHLLLSKQ 158 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~~~~~-------~~~~aD~ailVVda~~g~~~q------t--------------~--e~l~~~~~ 158 (463)
....+|.|.|..+..+-+.. .....|.++.||||....... . . ..+ ....
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Q 171 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEEL-FEDQ 171 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHH-HHHH
Confidence 46789999997764333221 123468899999997532100 0 0 001 1122
Q ss_pred cCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 159 IGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 159 l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
...-.+ |++||+|+++++.++.+.+.+++
T Consensus 172 i~~AD~-IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 172 LACADL-VILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred HHhCCE-EEEeccccCCHHHHHHHHHHHHH
Confidence 222324 78999999988776665555544
No 428
>KOG0780|consensus
Probab=97.71 E-value=0.00038 Score=68.34 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=80.6
Q ss_pred cccccccccCCCce-eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccc------cCCChh-hhhcCceEEeeEE--
Q psy3124 32 CYSDDASSKSSLVH-CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQ------IDRAPE-EKARGITINIAHV-- 101 (463)
Q Consensus 32 ~~~~~~~~~~~~~~-~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~------~d~~~~-e~~~g~Ti~~~~~-- 101 (463)
.+-....+.+.+.. -.|.++|-.|+||||.+..|.......|......+.. .|.++. ....++.+..++.
T Consensus 87 ~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~ 166 (483)
T KOG0780|consen 87 LDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEA 166 (483)
T ss_pred hCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccccc
Confidence 33444455554433 4568999999999999999987776666543322111 222221 1222344333221
Q ss_pred -----------EEecCCeeEEEEeCCChhh----hHHHHHhh--cccCCEEEEEEeCCCCCcHHHHHHHHHH--HHcCCC
Q psy3124 102 -----------EYSTNTRHYAHTDCPGHAD----YIKNMISG--ASQMDGAIVVVAASEGQMPQTREHLLLS--KQIGID 162 (463)
Q Consensus 102 -----------~~~~~~~~i~liDtPGh~~----f~~~~~~~--~~~aD~ailVVda~~g~~~qt~e~l~~~--~~l~ip 162 (463)
.|..++..++|+||.|..+ ...+|..- +-.+|-+|+|+||+-| |..+....+ ...++-
T Consensus 167 dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg 243 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVG 243 (483)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccc
Confidence 2344678899999999432 34444332 3458999999999875 333322222 223444
Q ss_pred eEEEEEeccCcc
Q psy3124 163 NVVVYVNKADLV 174 (463)
Q Consensus 163 ~iivvvNKiD~~ 174 (463)
-+++||+|-.
T Consensus 244 --~vIlTKlDGh 253 (483)
T KOG0780|consen 244 --AVILTKLDGH 253 (483)
T ss_pred --eEEEEecccC
Confidence 3678999976
No 429
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=97.70 E-value=0.00029 Score=55.15 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=55.1
Q ss_pred ceEEEEEEEeccCCCC-----CCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEE
Q psy3124 337 NRYEAEIYLLSKAEGG-----RYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFT 411 (463)
Q Consensus 337 ~~f~a~v~~l~~~~~~-----~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfi 411 (463)
++++.+..+|+..-|. +-.||..|..+++.+|+....++|.-..++ .+++.|.+|+|.+.|+|.+
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~d----------~~~v~L~~Pvc~~~g~rva 71 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVKKD----------MAEVELKKPVCAEKGERVA 71 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEETT----------EEEEEEEEEEE-STTSEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEECC----------EEEEEecCCeEcCcCCeee
Confidence 4567777888754332 236899999999999999999998755332 6778889999999999998
Q ss_pred EEe--C--CceEEEEEE
Q psy3124 412 IRE--N--NKLVATGIV 424 (463)
Q Consensus 412 lr~--~--~~tig~G~V 424 (463)
|.. + .|.||+|.|
T Consensus 72 iSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 72 ISRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred eehhccCeEEEEEEEeC
Confidence 843 3 469999986
No 430
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.70 E-value=0.00041 Score=68.43 Aligned_cols=148 Identities=21% Similarity=0.181 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCcccc-cccc----ccCC-ChhhhhcCceEEee--EEEEe--------------
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKF-ITFD----QIDR-APEEKARGITINIA--HVEYS-------------- 104 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~-~~~~----~~d~-~~~e~~~g~Ti~~~--~~~~~-------------- 104 (463)
..++.|.-|||||||+++|..... |+.-+ ..+. ..|. .-.+....-..++. .++..
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 457899999999999999976533 22111 1110 1221 11111111122322 22221
Q ss_pred -cCCeeEEEEeCCChhhhHHHHHh--------hcccCCEEEEEEeCCCCCcHHH---HHHHHHHHHcCCCeEEEEEeccC
Q psy3124 105 -TNTRHYAHTDCPGHADYIKNMIS--------GASQMDGAIVVVAASEGQMPQT---REHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 105 -~~~~~i~liDtPGh~~f~~~~~~--------~~~~aD~ailVVda~~g~~~qt---~e~l~~~~~l~ip~iivvvNKiD 172 (463)
.......+|.|-|..+=.+-..+ .....|.++-||||.+...... .....++.. -. ++++||.|
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD-~ivlNK~D 156 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD-VIVLNKTD 156 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc-EEEEeccc
Confidence 12356789999996654332222 2233588999999987544322 122222222 22 47899999
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 173 LVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
+++++..+. ++..+.+++ ...+++..|.
T Consensus 157 lv~~~~l~~----l~~~l~~ln---p~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEA----LEARLRKLN---PRARIIETSY 184 (323)
T ss_pred CCCHHHHHH----HHHHHHHhC---CCCeEEEccc
Confidence 998765444 444454444 3577888776
No 431
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.70 E-value=0.00084 Score=69.48 Aligned_cols=60 Identities=20% Similarity=0.418 Sum_probs=45.0
Q ss_pred cCCCeEEEEEeccCccc---------HHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHH
Q psy3124 159 IGIDNVVVYVNKADLVD---------REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDA 229 (463)
Q Consensus 159 l~ip~iivvvNKiD~~~---------~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~ 229 (463)
+|+| ++||++|.|... ++.++-+.+.++.++-.+| .-.|++|.+.. .+++.|..+
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~----------~n~~~L~~y 258 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEE----------KNLDLLYKY 258 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeecccc----------ccHHHHHHH
Confidence 3577 999999999752 3456667777787777776 44788898877 788888888
Q ss_pred hhhcC
Q psy3124 230 LDKHI 234 (463)
Q Consensus 230 L~~~l 234 (463)
|...+
T Consensus 259 i~h~l 263 (472)
T PF05783_consen 259 ILHRL 263 (472)
T ss_pred HHHHh
Confidence 87754
No 432
>KOG1487|consensus
Probab=97.69 E-value=7.2e-05 Score=69.49 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY---- 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f---- 121 (463)
-++.++|.+..|||||+..|++...+...+. +.|.........+++-++.+.|.||..+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasye----------------fttl~~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE----------------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccc----------------ceeEEEecceEeccccceeeecCcchhcccccC
Confidence 4899999999999999999987633322111 23333333445567788999999996442
Q ss_pred ---HHHHHhhcccCCEEEEEEeCCCCC
Q psy3124 122 ---IKNMISGASQMDGAIVVVAASEGQ 145 (463)
Q Consensus 122 ---~~~~~~~~~~aD~ailVVda~~g~ 145 (463)
-+..+.-++.|..+++|.|+..++
T Consensus 124 kgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCcc
Confidence 344556677789999999987543
No 433
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.69 E-value=2.1e-05 Score=79.31 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh--HH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--IK 123 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--~~ 123 (463)
.+++++|.+|+|||||+|+|++....... ........|.|.+.....+ +..+.++||||.... +.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~----------~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~ 221 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD----------VITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSHQMA 221 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc----------eeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCChhHhh
Confidence 58999999999999999999864221100 0111223477777654443 234679999996432 11
Q ss_pred HHH-----hh---cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 124 NMI-----SG---ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 124 ~~~-----~~---~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.++ .. -.......+.++..+.++-.-...+........ .+.+.++|.+..
T Consensus 222 ~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~-~~~~~~~~~~~~ 279 (360)
T TIGR03597 222 HYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKT-SFTFYVSNELNI 279 (360)
T ss_pred hhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCce-EEEEEccCCcee
Confidence 111 11 123456677777665432111111111111222 366777777765
No 434
>PRK12289 GTPase RsgA; Reviewed
Probab=97.66 E-value=5e-05 Score=75.91 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHh-cCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAK-IGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.++++|++|+|||||+|+|.+.... .|..+. ...+.+.+|.+...+.+ .+. ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~---------~~~rGrHTT~~~~l~~l--~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSG---------KLGRGRHTTRHVELFEL--PNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccC---------CCCCCCCcCceeEEEEC--CCC-cEEEeCCCcccc
Confidence 4899999999999999999754211 111110 11122234444433333 222 379999997654
No 435
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.63 E-value=6.1e-05 Score=72.48 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=39.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....+++|++|+|||||+|+|..... +.|..+. ...+.+..|.....+.+... =.++||||...|
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~---------~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISE---------KLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc---------cCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 34689999999999999999975322 2221111 11123334444444444323 368999997664
No 436
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.61 E-value=6.8e-05 Score=71.42 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHh-cCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAK-IGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
..++++|++|+|||||+|+|.+.... .|..+. ...+.+.+|.....+.+ . ...++||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~---------~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISS---------KLGLGKHTTTHVELFHF--H--GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceec---------cCCCCCCcCCceEEEEc--C--CcEEEeCCCcccc
Confidence 47899999999999999999865322 121111 11223345555544444 2 2379999997553
No 437
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.60 E-value=0.00046 Score=66.49 Aligned_cols=85 Identities=28% Similarity=0.363 Sum_probs=65.2
Q ss_pred ccCCEEEEEEeCCCCCc--HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 130 SQMDGAIVVVAASEGQM--PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 130 ~~aD~ailVVda~~g~~--~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
...|-+++|+++.++.+ .+..+.|-.+...|+.++ |++||+|+++.+.... ++.......+| ++++.+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pv-IvlnK~DL~~~~~~~~--~~~~~~y~~~g-----y~v~~~s~ 149 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPV-IVLNKIDLLDDEEAAV--KELLREYEDIG-----YPVLFVSA 149 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEE-EEEEccccCcchHHHH--HHHHHHHHhCC-----eeEEEecC
Confidence 34788899999988765 566678888999999965 7799999996655443 45555666666 67999999
Q ss_pred hhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 208 LLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 208 ~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+++ .++++|.+.|..
T Consensus 150 ~~~----------~~~~~l~~~l~~ 164 (301)
T COG1162 150 KNG----------DGLEELAELLAG 164 (301)
T ss_pred cCc----------ccHHHHHHHhcC
Confidence 998 888888877654
No 438
>PRK13796 GTPase YqeH; Provisional
Probab=97.58 E-value=0.00039 Score=70.18 Aligned_cols=98 Identities=24% Similarity=0.210 Sum_probs=62.9
Q ss_pred hhHHHHHhhcccCC-EEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH-HHHHHHHHHHHHHHHcCCCC
Q psy3124 120 DYIKNMISGASQMD-GAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE-IMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 120 ~f~~~~~~~~~~aD-~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~-~~~~i~~~i~~~l~~~g~~~ 197 (463)
+|.+ ++..+..+| .+++|||+.+-...... .+.... -+.| +++|+||+|+.+.. ..+.+.+.+....+..|+..
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~-~L~~~~-~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIP-GLHRFV-GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhH-HHHHHh-CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 4544 667777666 88999999874322211 221111 2556 88999999997532 12334444555556666532
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+++.+||+++ .++++|++.|...
T Consensus 134 --~~v~~vSAk~g----------~gI~eL~~~I~~~ 157 (365)
T PRK13796 134 --VDVVLISAQKG----------HGIDELLEAIEKY 157 (365)
T ss_pred --CcEEEEECCCC----------CCHHHHHHHHHHh
Confidence 35899999999 8999999998763
No 439
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.56 E-value=0.00032 Score=70.09 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCcc--ccccccccCCC---hhhh------hcCceEEeeEEE-------Ee
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKS--KFITFDQIDRA---PEEK------ARGITINIAHVE-------YS 104 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~--~~~~~~~~d~~---~~e~------~~g~Ti~~~~~~-------~~ 104 (463)
+...|+++|+.|+||||-+..|..... ..+.. ... .+|.. -.|. .-|+++....-. ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiI---TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAII---TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEE---EeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 478899999999999999999864433 11111 111 11111 1111 113333322110 01
Q ss_pred cCCeeEEEEeCCChhhh----HHHHHhhcc--cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 105 TNTRHYAHTDCPGHADY----IKNMISGAS--QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f----~~~~~~~~~--~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..++.++|+||.|+..+ +..+...+. ...-..||++|+... ..-++.+.....+++..+ ++||+|.+.
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~~~--I~TKlDET~ 352 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPIDGL--IFTKLDETT 352 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCccee--EEEcccccC
Confidence 34678999999997655 333333332 345568889987532 333455566666788854 589999983
No 440
>KOG0082|consensus
Probab=97.55 E-value=0.0027 Score=62.73 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=59.1
Q ss_pred cCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-----HHH---HHHHHHHHH-----
Q psy3124 92 RGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-----PQT---REHLLLSKQ----- 158 (463)
Q Consensus 92 ~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-----~qt---~e~l~~~~~----- 158 (463)
|-.|.-+....|...+..+-++|.+|+..=.+.++.....++++|+||+-++-.+ ..| .|.+.+-..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 3344455667788888899999999999999999999999999999999875321 111 122222211
Q ss_pred --cCCCeEEEEEeccCccc
Q psy3124 159 --IGIDNVVVYVNKADLVD 175 (463)
Q Consensus 159 --l~ip~iivvvNKiD~~~ 175 (463)
...+ +|+++||.|+..
T Consensus 259 ~F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 259 WFANTS-IILFLNKKDLFE 276 (354)
T ss_pred ccccCc-EEEEeecHHHHH
Confidence 1345 999999999863
No 441
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.53 E-value=0.00013 Score=71.26 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhc-CccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
..++++|++|+|||||+|.|.+..... |..+. ...+.++.|.......+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~---------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISE---------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceec---------cCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 579999999999999999998753321 21110 11223345555444444322 368999998765
No 442
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.53 E-value=0.00013 Score=72.38 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=41.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
+...++.++|-+++|||||||+|.+... .......|+|-....+... ..+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~---------------~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV---------------AKTSNRPGTTKGIQWIKLD---DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc---------------eeeCCCCceecceEEEEcC---CCeEEecCCCc
Confidence 3457899999999999999999976522 1111223788776666554 34899999993
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.0011 Score=68.69 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCC--------hh-hhhcCceEEeeEE-------EEecCCe
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRA--------PE-EKARGITINIAHV-------EYSTNTR 108 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~--------~~-e~~~g~Ti~~~~~-------~~~~~~~ 108 (463)
..|+++|+.|+||||++..|..... +.|...... -..|.. .. -...|+......- .....++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~L-I~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVAL-LTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEE-EeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 5789999999999999999987653 333211110 011211 00 1222333221111 1123456
Q ss_pred eEEEEeCCChhhhHH---H---HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 109 HYAHTDCPGHADYIK---N---MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 109 ~i~liDtPGh~~f~~---~---~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+.+|||+|...... . ++......+-.+||+|+..+. ....+.+......++.. +++||+|...
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~~g--~IlTKlDet~ 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGLAG--CILTKLDEAA 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCCCE--EEEeCCCCcc
Confidence 789999999433222 1 122222234478999998653 22223333444456553 4689999873
No 444
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.51 E-value=0.00043 Score=61.90 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=73.5
Q ss_pred EcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChh---hhhcCceEE--eeE--EEEecCCeeEEEEeCCChhhhHH
Q psy3124 51 IGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPE---EKARGITIN--IAH--VEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 51 ~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---e~~~g~Ti~--~~~--~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
-+-.|+||||+.-.|...+.+.|..-... ..|.... ..-++.... +.. .......+.+.++|||+... .
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllv--D~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~--~ 81 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLL--DADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG--D 81 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEE--eCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCc--H
Confidence 34578999999999987776655322110 0010000 000000000 000 00112467899999998643 2
Q ss_pred HHHhh--cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 124 NMISG--ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 124 ~~~~~--~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
..... +..+|.+++|+.+..-....+.+.+..+...+++.+-+++|+.+..
T Consensus 82 ~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 82 EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 22222 3678999999998876677888888999999999777899999853
No 445
>KOG1491|consensus
Probab=97.50 E-value=0.00019 Score=69.39 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=56.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEE-------E-------ecC---
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVE-------Y-------STN--- 106 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~-------~-------~~~--- 106 (463)
.+++++|+|-+++||||++++|++.....+..++- ||+..... | ...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~----------------TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~v 82 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFC----------------TIDPNEARVEVPDSRFDLLCPIYGPKSKV 82 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcc----------------eeccccceeecCchHHHHHHHhcCCccee
Confidence 46899999999999999999999875544443331 22221111 1 111
Q ss_pred CeeEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCCC
Q psy3124 107 TRHYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 107 ~~~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~ 143 (463)
--.+++.|.+|..+ .-...++-++.+|+++-||++..
T Consensus 83 pa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 83 PAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 12478999999432 23445566788999999999875
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.47 E-value=0.0012 Score=52.34 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=50.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH-HH
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN-MI 126 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~-~~ 126 (463)
+++.|..|+||||+...|...+.+.|.. +- .++ .+.++|+|+..+.... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~--------------------v~----~~~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR--------------------VL----LID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe--------------------EE----EEC----CEEEEeCCCCccchhhhhh
Confidence 6788999999999999998776553321 10 011 6899999997554321 24
Q ss_pred hhcccCCEEEEEEeCCCCCc
Q psy3124 127 SGASQMDGAIVVVAASEGQM 146 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~ 146 (463)
..+..+|.+++++++.....
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 54 LALLAADLVIIVTTPEALAV 73 (99)
T ss_pred hhhhhCCEEEEecCCchhhH
Confidence 55677999999999876544
No 447
>KOG0096|consensus
Probab=97.44 E-value=0.0005 Score=61.05 Aligned_cols=141 Identities=18% Similarity=0.097 Sum_probs=86.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEec--CCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYST--NTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDtPGh~ 119 (463)
.+..+++++|..+.||||++++...... ..... .-|+.. ....|.+ ..-++..+||.|.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~a---------------t~Gv~~--~pl~f~tn~g~irf~~wdtagqE 70 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPA---------------TLGVEV--HPLLFDTNRGQIRFNVWDTAGQE 70 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccC---------------cceeEE--eeeeeecccCcEEEEeeecccce
Confidence 4678999999999999999998753311 11110 112222 2222322 23678899999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHH--HHHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQ--TREHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~q--t~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
+|......+.-++-+|+++.|...-..-+ .+-|-.+++. .++| ++++.||.|.-... ++.+--.+. .
T Consensus 71 k~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r~----~k~k~v~~~-----r 140 (216)
T KOG0096|consen 71 KKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKVDIKARK----VKAKPVSFH-----R 140 (216)
T ss_pred eecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccceeccccc----cccccceee-----e
Confidence 98776666666678889888887544322 2333333333 3578 99999999976432 111111111 1
Q ss_pred CCCCcEEEccchhh
Q psy3124 197 GDNTPFVFGSALLA 210 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~ 210 (463)
..++..+.+||+..
T Consensus 141 kknl~y~~iSaksn 154 (216)
T KOG0096|consen 141 KKNLQYYEISAKSN 154 (216)
T ss_pred cccceeEEeecccc
Confidence 13466788999877
No 448
>KOG3887|consensus
Probab=97.44 E-value=0.00035 Score=64.35 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
.+|.++|+--+|||++.......+..+ +..-.|....+|.+- +...--.+.+||.||+.+|..-.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-----------eTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-----------ETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-----------ceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCc
Confidence 459999999999999988765432221 111222222222221 11122356789999988764322
Q ss_pred ---HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHcCCC---eEEEEEeccCcccHHHH----HHHHHHHHHHHHHcC
Q psy3124 126 ---ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQIGID---NVVVYVNKADLVDREIM----ELVELEVRDVLTAYG 194 (463)
Q Consensus 126 ---~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l~ip---~iivvvNKiD~~~~~~~----~~i~~~i~~~l~~~g 194 (463)
..-.+.+-+.++||||.+..+ +.++-|+..+++..+. .+=|++-|.|-.+++.- ..+.+...+-|+..|
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g 172 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG 172 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence 122366788999999987654 5677888888887642 26688999998754322 233445566677777
Q ss_pred CCCCCCcEEEccchhh
Q psy3124 195 YDGDNTPFVFGSALLA 210 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~ 210 (463)
...-.+.+..+|-...
T Consensus 173 le~v~vsf~LTSIyDH 188 (347)
T KOG3887|consen 173 LEKVQVSFYLTSIYDH 188 (347)
T ss_pred hccceEEEEEeeecch
Confidence 7665566677776553
No 449
>KOG4181|consensus
Probab=97.44 E-value=0.0015 Score=63.25 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=74.5
Q ss_pred ccccccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcccccccccc--CCChhhhhcCceEEeeEEEEecCCe
Q psy3124 31 NCYSDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQI--DRAPEEKARGITINIAHVEYSTNTR 108 (463)
Q Consensus 31 ~~~~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~--d~~~~e~~~g~Ti~~~~~~~~~~~~ 108 (463)
++++..+.+-+......|+++|..|+|||||++.|.....+. ..+.+-.. ...-.|+....|+.+. +.....
T Consensus 174 ~~d~a~~ll~~~tdf~VIgvlG~QgsGKStllslLaans~~~---dyr~yvFRpvS~Ea~E~~~~qt~~Id---~~i~q~ 247 (491)
T KOG4181|consen 174 FNDNARKLLHKTTDFTVIGVLGGQGSGKSTLLSLLAANSLDY---DYRQYVFRPVSPEADECIFAQTHKID---PNIGQK 247 (491)
T ss_pred hhhHHHHHhhcCCCeeEEEeecCCCccHHHHHHHHhccChHH---hhHHHhcccCChhhhhhhccceeccc---cccccc
Confidence 344555555555556778999999999999999997653221 11111111 1122334434444321 212222
Q ss_pred eEE-----------------EEeCCChhh-----------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc-
Q psy3124 109 HYA-----------------HTDCPGHAD-----------YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI- 159 (463)
Q Consensus 109 ~i~-----------------liDtPGh~~-----------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l- 159 (463)
++. +.|+|--.. -+..|..-+..++.+|+|+|.-.. .+..+.|+.+..+
T Consensus 248 ~i~fldtqpl~sfsi~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d--~~lir~L~~Ae~~r 325 (491)
T KOG4181|consen 248 SILFLDTQPLQSFSIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD--EQLIRLLNAAERLR 325 (491)
T ss_pred eEEeeccccccchHHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH--HHHHHHHHHHHhhC
Confidence 333 445553111 144455566789999999986532 2333444444332
Q ss_pred ---------------CCCeEEEEEeccCcc
Q psy3124 160 ---------------GIDNVVVYVNKADLV 174 (463)
Q Consensus 160 ---------------~ip~iivvvNKiD~~ 174 (463)
-.|++|++-||.-..
T Consensus 326 P~laifrh~~~~~r~~~p~lVFv~~KA~ri 355 (491)
T KOG4181|consen 326 PTLAIFRHCKGYVRDHMPQLVFVRAKAHRI 355 (491)
T ss_pred cccCccccccccccccCcceEEEecccccc
Confidence 157899999987555
No 450
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.43 E-value=0.001 Score=54.19 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=51.4
Q ss_pred EEEEc-CCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 48 VGTIG-HVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 48 I~i~G-~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
|++.| ..|+||||+.-.|.....+.|..-. ..|..+. +.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl----~~d~d~~-------------------~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVL----LIDLDPQ-------------------YDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEE----EEeCCCC-------------------CCEEEEeCcCCCCHH--HH
Confidence 56677 5689999999999776655432211 1111111 568999999975432 33
Q ss_pred hhcccCCEEEEEEeCCCCCcHHHHHH
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQTREH 152 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~qt~e~ 152 (463)
..+..+|.++++++++........+.
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~ 82 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKL 82 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHH
Confidence 66677999999999875433333333
No 451
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.42 E-value=0.00031 Score=61.87 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=36.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
...+++++|.+++|||||+++|.+.... ......|.|....... .+..+.++||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA---------------STSPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc---------------ccCCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 3578899999999999999999743110 0111224444432222 2336899999993
No 452
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00032 Score=76.05 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=66.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh-HhcCccccccccccCCCh---hh------hhcCceEEeeEE-------EEecCC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA-AKIGKSKFITFDQIDRAP---EE------KARGITINIAHV-------EYSTNT 107 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~-------~~~~~~ 107 (463)
...|+++|+.|+||||++..|.... ...|...... -..|... .| ...|+.+....- --...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~l-it~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLAL-LTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEE-ecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 3578999999999999999998765 3334211100 0111110 01 112322221100 001245
Q ss_pred eeEEEEeCCChhhh----HHHH--HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHH---HcCCCeEEEEEeccCccc
Q psy3124 108 RHYAHTDCPGHADY----IKNM--ISGASQMDGAIVVVAASEGQMPQTREHLLLSK---QIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 108 ~~i~liDtPGh~~f----~~~~--~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~---~l~ip~iivvvNKiD~~~ 175 (463)
+.+.||||||.... .... +......+-.+||+|++.+.. ...+.+.... ..++.. +++||+|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~g--lIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDG--CIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCE--EEEeccCCCC
Confidence 68999999993322 2211 112334678899999986321 1112222222 125554 4699999974
No 453
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.39 E-value=0.0017 Score=53.10 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=63.7
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccc-----------cceEEccCCeEEEEecc
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQK-----------KVSEARAGDNVGVLLRN 315 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~-----------~v~~a~aG~~v~l~l~~ 315 (463)
..|-++...+|.|+++.--|.+|+|++||.+.+.....++.++|++|...+. +++++.|..-+-+...+
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 4577888889999999999999999999999998766667789999988753 88999977666665444
Q ss_pred ccccCcccceEEe
Q psy3124 316 VKLKQIERGMLLA 328 (463)
Q Consensus 316 ~~~~~i~~G~vl~ 328 (463)
+ +++..|+-+.
T Consensus 83 L--~~v~aG~~~~ 93 (110)
T cd03703 83 L--EKAIAGSPLL 93 (110)
T ss_pred C--ccccCCCEEE
Confidence 3 4557787653
No 454
>PRK13796 GTPase YqeH; Provisional
Probab=97.38 E-value=0.00021 Score=72.13 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
..++.++|.+|+|||||+|+|.+... |.. +........|.|.+...+.+.. ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~--~~~--------~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEIT--GEK--------DVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcc--Ccc--------ceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 35799999999999999999975421 110 0111223457787766555532 25799999963
No 455
>PRK13695 putative NTPase; Provisional
Probab=97.37 E-value=0.0011 Score=59.59 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE-----------EEE-ecCCeeEEEE
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH-----------VEY-STNTRHYAHT 113 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-----------~~~-~~~~~~i~li 113 (463)
++|+++|.+|+|||||+..+.+.....|.... .+..... .+..+....+... ..+ ......=.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG--GFYTEEV-REGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVV 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE--EEEcHHH-HhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEE
Confidence 47999999999999999998776544332110 0010000 0111111111110 000 0000001133
Q ss_pred eCCChhhhHHHHH-hhcccCCEEEEEEe---CCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Q psy3124 114 DCPGHADYIKNMI-SGASQMDGAIVVVA---ASEGQMPQTREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 114 DtPGh~~f~~~~~-~~~~~aD~ailVVd---a~~g~~~qt~e~l~~~~~l~ip~iivvvNKi 171 (463)
|.-|.+.+..... ..+..+|. +++| +.+....+..+.+..+...+.+ +++++||.
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~-~i~v~h~~ 136 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKP-VIATLHRR 136 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCe-EEEEECch
Confidence 4444555444433 33455666 7889 5555556677777777777877 88999974
No 456
>KOG2743|consensus
Probab=97.36 E-value=0.0026 Score=60.59 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=45.2
Q ss_pred CeeEEEEeCCChhhhH--HHH------HhhcccCCEEEEEEeCCCCC-----------cHHHHHHHHHHHHcCCCeEEEE
Q psy3124 107 TRHYAHTDCPGHADYI--KNM------ISGASQMDGAIVVVAASEGQ-----------MPQTREHLLLSKQIGIDNVVVY 167 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~--~~~------~~~~~~aD~ailVVda~~g~-----------~~qt~e~l~~~~~l~ip~iivv 167 (463)
....+++.|.|..+-- ..| +..--..|+++-||||.+.. .....+.+.+|. - ++
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD------~-II 217 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALAD------R-II 217 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhh------e-ee
Confidence 3457889999976531 111 11122369999999997532 222222222222 2 46
Q ss_pred EeccCcccHHHHHHHHHHHHH
Q psy3124 168 VNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 168 vNKiD~~~~~~~~~i~~~i~~ 188 (463)
+||.|+++++....+.+.++.
T Consensus 218 ~NKtDli~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 218 MNKTDLVSEEEVKKLRQRIRS 238 (391)
T ss_pred eccccccCHHHHHHHHHHHHH
Confidence 999999988777766665554
No 457
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.34 E-value=0.0023 Score=64.02 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=58.5
Q ss_pred eEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-----------CcHHHHHHHHHHHH----c
Q psy3124 95 TINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-----------QMPQTREHLLLSKQ----I 159 (463)
Q Consensus 95 Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-----------~~~qt~e~l~~~~~----l 159 (463)
|..+....|...+..+.++|..|+..+.+.+......++++++|||.++- -...+.+.+..+.. .
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 33344456677788899999999999999999999999999999999862 12333333333222 3
Q ss_pred CCCeEEEEEeccCcc
Q psy3124 160 GIDNVVVYVNKADLV 174 (463)
Q Consensus 160 ~ip~iivvvNKiD~~ 174 (463)
+.| +++++||.|+.
T Consensus 251 ~~p-iil~~NK~D~~ 264 (342)
T smart00275 251 NTS-IILFLNKIDLF 264 (342)
T ss_pred CCc-EEEEEecHHhH
Confidence 566 99999999986
No 458
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.30 E-value=0.0056 Score=65.48 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=62.6
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccc-cCcccceEEec
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL-KQIERGMLLAK 329 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 329 (463)
.+|+.+. +.++..+|..|+|+.|..| +.+.+.. -.+|.||+.++++|++|.+|+-||+.+.+... .++..||+|..
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v-~r~~~~~-iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPL-MKDDGET-VGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeE-EecCCEE-EEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6788766 7999999999999999986 3333333 37899999999999999999999999986432 68999999864
No 459
>PRK00098 GTPase RsgA; Reviewed
Probab=97.27 E-value=0.00032 Score=68.86 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...++++|++|+|||||+|+|.+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999764
No 460
>KOG4423|consensus
Probab=97.22 E-value=8.9e-05 Score=65.42 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC---eeEEEEeCCChhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT---RHYAHTDCPGHADYI 122 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~liDtPGh~~f~ 122 (463)
.++.++|.-++|||+++.+-.....+... | ..+.++.+.....|+. .++.|+|..|+++|-
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~y---------------R-AtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHY---------------R-ATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHH---------------H-HHHhHHHHHHHhccChHHHHHHHHhcchhhhhhc
Confidence 47899999999999999987544221100 0 0111111111122333 346799999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHH-HH----cC--CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLS-KQ----IG--IDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~-~~----l~--ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
..+.-..+.|.++.+|+|.+.... +-+.....-+ .. .| +| ++...||||..... ..+.-..+.++-++.|
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~-~vllankCd~e~~a-~~~~~~~~d~f~keng 167 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQEKSA-KNEATRQFDNFKKENG 167 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcch-heeccchhccChHh-hhhhHHHHHHHHhccC
Confidence 777777788999999999886543 2232222211 11 12 44 67778999986332 2222345666677777
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+. -++.+|++.. .++++..+.|.+
T Consensus 168 f~----gwtets~Ken----------kni~Ea~r~lVe 191 (229)
T KOG4423|consen 168 FE----GWTETSAKEN----------KNIPEAQRELVE 191 (229)
T ss_pred cc----ceeeeccccc----------cChhHHHHHHHH
Confidence 74 3788999988 677776666655
No 461
>PHA02518 ParA-like protein; Provisional
Probab=97.21 E-value=0.0065 Score=56.10 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=43.4
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH-----cCCCeEEEEEeccCcc
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ-----IGIDNVVVYVNKADLV 174 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~ 174 (463)
..+.+.||||||... ..+...+..+|.+|+++.++.-....+.+.+..+.. -+.+.+.++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 356899999999743 335667788999999999876443333333333222 2566566777876543
No 462
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.19 E-value=0.0096 Score=59.79 Aligned_cols=170 Identities=19% Similarity=0.255 Sum_probs=88.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC--c--cccccccccCCChhhhhcCceEEee----------EEEEe-cCCe
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG--K--SKFITFDQIDRAPEEKARGITINIA----------HVEYS-TNTR 108 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g--~--~~~~~~~~~d~~~~e~~~g~Ti~~~----------~~~~~-~~~~ 108 (463)
..+-|+++|++-+||||++.++...+.-.. . .+.| ..|.+|. ...|.|+-.. .+.+. .-..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reR---a~DELPQ-S~aGktImTTEPKFiP~eAv~I~l~~~~~~ 91 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERER---ARDELPQ-SGAGKTIMTTEPKFIPNEAVEITLDDGIKV 91 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHH---hhhcCCc-CCCCCceeccCCcccCCcceEEEecCCceE
Confidence 468899999999999999999854432110 0 0000 1122111 1124444221 11111 1245
Q ss_pred eEEEEeCCCh--------hh-----------------hHHHHHhhccc-----CCEEEE-EEeCCCCC------cHHHHH
Q psy3124 109 HYAHTDCPGH--------AD-----------------YIKNMISGASQ-----MDGAIV-VVAASEGQ------MPQTRE 151 (463)
Q Consensus 109 ~i~liDtPGh--------~~-----------------f~~~~~~~~~~-----aD~ail-VVda~~g~------~~qt~e 151 (463)
++-++||-|. .+ |.....-|.+. +-..|+ --|.+-+. .....+
T Consensus 92 kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEer 171 (492)
T PF09547_consen 92 KVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEER 171 (492)
T ss_pred EEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHH
Confidence 6778999882 11 22222223221 222222 23433221 244566
Q ss_pred HHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 152 HLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 152 ~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.+..++..|.| |+|++|=.+=.+++. ..+.+++.+ ++ ++|++++++..- ....+..+|+.+.
T Consensus 172 vI~ELk~igKP-FvillNs~~P~s~et-~~L~~eL~e---kY-----~vpVlpvnc~~l--------~~~DI~~Il~~vL 233 (492)
T PF09547_consen 172 VIEELKEIGKP-FVILLNSTKPYSEET-QELAEELEE---KY-----DVPVLPVNCEQL--------REEDITRILEEVL 233 (492)
T ss_pred HHHHHHHhCCC-EEEEEeCCCCCCHHH-HHHHHHHHH---Hh-----CCcEEEeehHHc--------CHHHHHHHHHHHH
Confidence 77889999988 899999776544432 223333322 33 389999988764 1145666666555
Q ss_pred hcCC
Q psy3124 232 KHIP 235 (463)
Q Consensus 232 ~~l~ 235 (463)
..+|
T Consensus 234 yEFP 237 (492)
T PF09547_consen 234 YEFP 237 (492)
T ss_pred hcCC
Confidence 4344
No 463
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.19 E-value=0.00076 Score=61.40 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=53.2
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC--CCeEEEEEeccCcccHHHHHH
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG--IDNVVVYVNKADLVDREIMEL 181 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~--ip~iivvvNKiD~~~~~~~~~ 181 (463)
...+.|+|||+..... +...+..+|.+|+++++..-....+...+..+..++ .+.+.+|+||.+.-+....++
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~ 168 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQE 168 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHH
Confidence 3789999999865544 455667899999999987644455666667777777 445788999998875544443
No 464
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.0028 Score=61.76 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC------h-hhhhcCceEEeeE-------EEE----
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA------P-EEKARGITINIAH-------VEY---- 103 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~------~-~e~~~g~Ti~~~~-------~~~---- 103 (463)
++....|.++|-.|+||||-++.|.....+.|..-......+.+. . .-..-|+.+-... .-|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 344678899999999999999999988877775432211111111 1 1111233332111 111
Q ss_pred --ecCCeeEEEEeCCChhh----hHHHH---Hhhccc-----CCEEEEEEeCCCCCc--HHHHHHHHHHHHcCCCeEEEE
Q psy3124 104 --STNTRHYAHTDCPGHAD----YIKNM---ISGASQ-----MDGAIVVVAASEGQM--PQTREHLLLSKQIGIDNVVVY 167 (463)
Q Consensus 104 --~~~~~~i~liDtPGh~~----f~~~~---~~~~~~-----aD~ailVVda~~g~~--~qt~e~l~~~~~l~ip~iivv 167 (463)
...+..+.|+||.|... .+.++ .+-+.. ++-+++|+||..|-. .|.+. .-...++. - ++
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~---F~eav~l~-G-iI 290 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI---FNEAVGLD-G-II 290 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH---HHHhcCCc-e-EE
Confidence 12467899999999433 22222 122222 344888889998742 23332 23345666 3 57
Q ss_pred EeccCcc
Q psy3124 168 VNKADLV 174 (463)
Q Consensus 168 vNKiD~~ 174 (463)
+||+|-.
T Consensus 291 lTKlDgt 297 (340)
T COG0552 291 LTKLDGT 297 (340)
T ss_pred EEecccC
Confidence 9999965
No 465
>KOG2485|consensus
Probab=97.18 E-value=0.00086 Score=64.31 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=47.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
...+.++.++|-+|.|||||+|++........+ .+ ..-.+.|+|..++...--.+...+.++||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k-~a---------~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK-AA---------RVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc-ce---------eccCCCCceeeehhheEeccCCceEEecCCC
Confidence 456889999999999999999999655443321 11 1223458998887643334566788999999
No 466
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.16 E-value=0.0034 Score=50.26 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=58.8
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeecc-ccceEEccCCeEEEEeccccccCc-ccc
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ-KKVSEARAGDNVGVLLRNVKLKQI-ERG 324 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~~~~i-~~G 324 (463)
..|.++...++.|.+++..|.+|+|++||.+.... ...+|++|...+ .++++|.||+.|.+. +. +++ ..|
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~--~~~P~aG 74 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT----TYGKVRAMFDENGKRVKEAGPSTPVEIL--GL--KGVPQAG 74 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc----cccEEEEEECCCCCCCCEECCCCcEEEc--CC--CCCCCCC
Confidence 45777888899999999999999999999987743 236899998764 799999999988763 33 233 567
Q ss_pred eEEec
Q psy3124 325 MLLAK 329 (463)
Q Consensus 325 ~vl~~ 329 (463)
|.+..
T Consensus 75 d~~~~ 79 (95)
T cd03702 75 DKFLV 79 (95)
T ss_pred CEEEE
Confidence 76643
No 467
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.13 E-value=0.00089 Score=60.14 Aligned_cols=50 Identities=22% Similarity=0.096 Sum_probs=35.0
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHH--HHHcCCCeEEEEEeccCcccHHHHHHHH
Q psy3124 133 DGAIVVVAASEGQMPQTREHLLL--SKQIGIDNVVVYVNKADLVDREIMELVE 183 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l~~--~~~l~ip~iivvvNKiD~~~~~~~~~i~ 183 (463)
|++++|+||+.+......+.... +...+.| +|+|+||+|+++++......
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~~~~l~~~~ 52 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVPKENVEKWL 52 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCC-EEEEEehhhcCCHHHHHHHH
Confidence 78999999998765544444444 3334566 88999999999766544333
No 468
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.12 E-value=0.0071 Score=56.47 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=52.0
Q ss_pred eeEEEEeCCChhhhHHH-HHhhccc--CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 108 RHYAHTDCPGHADYIKN-MISGASQ--MDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~~-~~~~~~~--aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
+.+.++|||........ +...+.. +|.+++|+.+......++.+.+..++..+++..-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 78999999975443332 2333333 5899999999887788899999999999998778899998765
No 469
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.98 E-value=0.015 Score=53.56 Aligned_cols=67 Identities=22% Similarity=0.180 Sum_probs=50.5
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.+.|+|||...... .....+..+|.+|+|+++...-.....+.+..+...+++.+-+|+||.|..
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 4678999999732211 112233568999999999877777778888888889998788899999864
No 470
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.96 E-value=0.01 Score=56.32 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=49.8
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.+.++|||+.... .+...+..+|.+++|+++...-...+.+.+..+...+++.+.+++|+.|..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 578999999986543 445566789999999998765555556666667777888677899999864
No 471
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.94 E-value=0.0025 Score=73.85 Aligned_cols=113 Identities=24% Similarity=0.240 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhh--cCceEEeeEEEEecCCeeEEEEeCCChh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKA--RGITINIAHVEYSTNTRHYAHTDCPGHA---- 119 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~--~g~Ti~~~~~~~~~~~~~i~liDtPGh~---- 119 (463)
.=..++|++|+|||||+..- +.. +. ..+....+.. .|-|-++.. . -...-.+|||+|..
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~-------~p---l~~~~~~~~~~~~~~t~~c~w-w---f~~~avliDtaG~y~~~~ 176 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLK-------FP---LAERLGAAALRGVGGTRNCDW-W---FTDEAVLIDTAGRYTTQD 176 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCC-------Cc---CchhhccccccCCCCCcccce-E---ecCCEEEEcCCCccccCC
Confidence 44689999999999999875 110 00 0000000111 122222111 1 22356799999921
Q ss_pred -----------hhHHHHHhh--cccCCEEEEEEeCCCCCc---HH-------HHHHHH-HHHHc--CCCeEEEEEeccCc
Q psy3124 120 -----------DYIKNMISG--ASQMDGAIVVVAASEGQM---PQ-------TREHLL-LSKQI--GIDNVVVYVNKADL 173 (463)
Q Consensus 120 -----------~f~~~~~~~--~~~aD~ailVVda~~g~~---~q-------t~e~l~-~~~~l--~ip~iivvvNKiD~ 173 (463)
.|+...... -...|++|++||+.+=.. .+ .+..+. +...+ .+| +.|++||||+
T Consensus 177 ~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~P-VYvv~Tk~Dl 255 (1169)
T TIGR03348 177 SDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFP-VYLVLTKADL 255 (1169)
T ss_pred CcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecchh
Confidence 123222221 245799999999875221 11 111221 22233 578 8999999999
Q ss_pred c
Q psy3124 174 V 174 (463)
Q Consensus 174 ~ 174 (463)
.
T Consensus 256 l 256 (1169)
T TIGR03348 256 L 256 (1169)
T ss_pred h
Confidence 8
No 472
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.93 E-value=0.0061 Score=57.47 Aligned_cols=64 Identities=8% Similarity=0.049 Sum_probs=43.9
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHH------HcCCCeEEEEEeccC
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSK------QIGIDNVVVYVNKAD 172 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~------~l~ip~iivvvNKiD 172 (463)
..+.+.||||||+.. ..+..++..||.+|+.+.++.-....+.+.+.... ..+++ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 457899999999775 33556778899999998886544434444433222 23677 558999987
No 473
>KOG3859|consensus
Probab=96.90 E-value=0.0041 Score=58.58 Aligned_cols=139 Identities=15% Similarity=0.237 Sum_probs=77.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh----
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD---- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~---- 120 (463)
.+||..+|..|-|||||+..|.....+.... ....+.-+-+..|.++..... .-+++++||.|..|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~-------~H~~~~V~L~~~TyelqEsnv---rlKLtiv~tvGfGDQinK 111 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPS-------THTLPNVKLQANTYELQESNV---RLKLTIVDTVGFGDQINK 111 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCC-------ccCCCCceeecchhhhhhcCe---eEEEEEEeecccccccCc
Confidence 5899999999999999999996553221110 111111111111222111111 13578999999533
Q ss_pred ---------h--------HHH------HHhhc--ccCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 121 ---------Y--------IKN------MISGA--SQMDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 121 ---------f--------~~~------~~~~~--~~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
| +.+ ++... +..+++++.|+.+ +++.....-.+..+.. .+. +|-++-|.|..
T Consensus 112 ~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVN-IIPvIAKaDti 189 (406)
T KOG3859|consen 112 EDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVN-IIPVIAKADTI 189 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhh-hHHHHHHhhhh
Confidence 2 211 12222 2357888888875 3333322222222211 222 56678899999
Q ss_pred cHHHHHHHHHHHHHHHHHcCC
Q psy3124 175 DREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 175 ~~~~~~~i~~~i~~~l~~~g~ 195 (463)
+.+.+...+..+..-|...|.
T Consensus 190 sK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 190 SKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred hHHHHHHHHHHHHHHHHhcCc
Confidence 888788777777777776654
No 474
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.021 Score=49.84 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
+..++|.+.|++|+|||||+..+...+.+.|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999988777665
No 475
>KOG1424|consensus
Probab=96.76 E-value=0.0014 Score=66.74 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=39.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
++.+.|+++|.+|+||||+||+|.+... .......|.|-....+.++ ..+.|.||||.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~Kk---------------VsVS~TPGkTKHFQTi~ls---~~v~LCDCPGL 369 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKK---------------VSVSSTPGKTKHFQTIFLS---PSVCLCDCPGL 369 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCce---------------eeeecCCCCcceeEEEEcC---CCceecCCCCc
Confidence 4468999999999999999999975411 1112233555544444443 34789999993
No 476
>KOG2484|consensus
Probab=96.69 E-value=0.0043 Score=61.44 Aligned_cols=77 Identities=22% Similarity=0.195 Sum_probs=53.9
Q ss_pred EEeCCChh-hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 112 HTDCPGHA-DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 112 liDtPGh~-~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
-.|-+++. .|.++...-+..+|++|-|+||+++......+.-... .+.|-+++|+|+||+|+++.+.++.....++.
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 45666654 4788888888899999999999997753333222222 24454779999999999998776655544443
No 477
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.65 E-value=0.014 Score=56.23 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=41.3
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHH----HcCCCeEEEEEeccCc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSK----QIGIDNVVVYVNKADL 173 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~----~l~ip~iivvvNKiD~ 173 (463)
.+.+.||||||.... ..+...+..||.+|+++.+.......+.+.+..+. ..+++...+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 467899999986431 12334467899999999886543333333332222 3466645578999984
No 478
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.57 E-value=0.042 Score=62.22 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=62.3
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccc-cCcccceEEec
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL-KQIERGMLLAK 329 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 329 (463)
.+|+.+. +.|+..+|..|+|++|..|. .+.+. .-.+|.||+.++++|++|.+|+-||+.+.+... .++..||+|..
T Consensus 931 ~vF~~~~-~~IaG~~V~~G~i~~~~~l~-r~~~~-~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSN-PAIVGVEVLEGTLRVGVTLI-KEDGM-KVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCC-CeEEEEEEeeCEEecCcEEE-ecCCE-EEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6888776 79999999999999998763 33333 347899999999999999999999999986432 48899998864
No 479
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.49 E-value=0.26 Score=53.09 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=26.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
+...-|+|+|..|+|||||+.+|...+.+.|
T Consensus 8 ~~~~vi~ivG~s~sGKTTlie~li~~L~~~G 38 (597)
T PRK14491 8 LSIPLLGFCAYSGTGKTTLLEQLIPELNQRG 38 (597)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 3455789999999999999999998887766
No 480
>KOG2423|consensus
Probab=96.47 E-value=0.0012 Score=64.87 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=25.8
Q ss_pred cccCCCceeEEEEEcCCCCCHHHHHHHHHh
Q psy3124 38 SSKSSLVHCNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 38 ~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
+...++..+.|+++|.+++|||+++|.|..
T Consensus 300 kLh~dkkqISVGfiGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 300 KLHSDKKQISVGFIGYPNVGKSSIINTLRK 329 (572)
T ss_pred hhccCccceeeeeecCCCCchHHHHHHHhh
Confidence 444577899999999999999999999953
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.43 E-value=0.016 Score=51.81 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=23.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
....++++|..|+|||||+.+|...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3457899999999999999999876443
No 482
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.40 E-value=0.012 Score=58.91 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCc
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGK 74 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~ 74 (463)
.....+++++|++|||||||..-|++.....|.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~ 102 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGR 102 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCc
Confidence 345678999999999999999999887766664
No 483
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.37 E-value=0.019 Score=46.02 Aligned_cols=74 Identities=23% Similarity=0.185 Sum_probs=57.1
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec-cccceEEccCCeEEEEeccccccCcccce
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF-QKKVSEARAGDNVGVLLRNVKLKQIERGM 325 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 325 (463)
..|.++-..++.|.+++..|.+|+|++||.+.... ...+|+++... ++.+.+|.|++.|.+. +.+ .....||
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~GkVr~~~d~~g~~v~~a~Ps~~v~i~--g~~-~~p~aGd 75 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG----TYGKIRTMVDENGKALLEAGPSTPVEIL--GLK-DVPKAGD 75 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC----ccceEEEEECCCCCCccccCCCCCEEEe--eec-CCccCCC
Confidence 45777888899999999999999999999997743 23689999775 5789999999987543 322 3446676
Q ss_pred EE
Q psy3124 326 LL 327 (463)
Q Consensus 326 vl 327 (463)
.+
T Consensus 76 ~~ 77 (95)
T cd03701 76 GV 77 (95)
T ss_pred EE
Confidence 55
No 484
>CHL00175 minD septum-site determining protein; Validated
Probab=96.36 E-value=0.042 Score=53.36 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=48.8
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.+.|+|||+.... .....+..+|.+++|++++..-...+...+..+...+.+.+-+++|+++..
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 568999999986432 334556779999999988765555666666777777776677899999753
No 485
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.34 E-value=0.11 Score=55.85 Aligned_cols=76 Identities=24% Similarity=0.194 Sum_probs=61.7
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccc-cCcccceEEec
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL-KQIERGMLLAK 329 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 329 (463)
.+|+.+. +.++..+|..|+|+.|..|. -+.+. ...+|.||+.++++|+++.+|+-||+.+.+... .++..||+|-.
T Consensus 475 ~vf~~~~-~~IaGc~V~~G~i~~~~~v~-r~~g~-~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSD-PAIVGVEVLGGTIKPGVPLI-KEDGK-RVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCC-CeEEEEEEEeCEEecCCEEE-EECCE-EEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6788766 78999999999999999753 22443 347899999999999999999999999985421 58899998853
No 486
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.31 E-value=0.032 Score=51.79 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=39.2
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEEeccCcc
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQI----GIDNVVVYVNKADLV 174 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l----~ip~iivvvNKiD~~ 174 (463)
+.+.+.+|||||...... ....+ ..||.+++|+.+..--.......+...+.+ +++...+++||+|..
T Consensus 115 ~~yD~ilID~~g~~~~~~-~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGG-FAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecc-cccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 457899999988642111 01122 379999999987542221222222333332 555456899999853
No 487
>KOG1424|consensus
Probab=96.27 E-value=0.014 Score=59.78 Aligned_cols=81 Identities=25% Similarity=0.231 Sum_probs=53.2
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG-IDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~-ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
+.+..-+-+..+|++|.+|||+...+--.-..-.+.+... -++.++++||.||.+++..... .+++.. ++
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aW----a~YF~~-----~n 234 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAW----AEYFRQ-----NN 234 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHH----HHHHHh-----cC
Confidence 3455556677799999999999987533222223333332 2457899999999977654333 333332 45
Q ss_pred CcEEEccchhh
Q psy3124 200 TPFVFGSALLA 210 (463)
Q Consensus 200 ~pvi~~Sa~~~ 210 (463)
+|+++-||+..
T Consensus 235 i~~vf~SA~~a 245 (562)
T KOG1424|consen 235 IPVVFFSALAA 245 (562)
T ss_pred ceEEEEecccc
Confidence 89999999874
No 488
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.24 E-value=0.029 Score=54.82 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=39.8
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEEeccCc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ----IGIDNVVVYVNKADL 173 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~----l~ip~iivvvNKiD~ 173 (463)
.+.+.+|||||... ...+...+..||.+++++++..-....+...+..++. .+++..-+++|+.|.
T Consensus 115 ~yD~IiIDt~~~l~-~~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVV-CGGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcce-echhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 46799999998622 1123345677999999998764322222233322222 245545588999873
No 489
>KOG2484|consensus
Probab=96.18 E-value=0.0038 Score=61.80 Aligned_cols=57 Identities=25% Similarity=0.455 Sum_probs=40.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
+..++++|+|-++.||||+||+|..... ..| ...|+|-.+..... +..+.|+|+||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg----------------~~pGvT~smqeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG----------------NVPGVTRSMQEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC----------------CCccchhhhhheec---cCCceeccCCce
Confidence 6789999999999999999999964311 111 12266655544433 457999999995
No 490
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.18 E-value=0.018 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~ 67 (463)
+|+++|..++|||+|+.++..
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~ 22 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQ 22 (124)
T ss_pred EEEEECCCChhHHHHHHHHhc
Confidence 689999999999999999854
No 491
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.13 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.-++.|++|||||||+|.+.+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~ 48 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLT 48 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccC
Confidence 45899999999999999998764
No 492
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.03 E-value=0.036 Score=39.61 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHhhcc-cCCEEEEEEeCCCCC--c--HHHHHHHHHHHHc-CCCeEEEEEeccC
Q psy3124 125 MISGAS-QMDGAIVVVAASEGQ--M--PQTREHLLLSKQI-GIDNVVVYVNKAD 172 (463)
Q Consensus 125 ~~~~~~-~aD~ailVVda~~g~--~--~qt~e~l~~~~~l-~ip~iivvvNKiD 172 (463)
.+.+++ .++++++++|.++.. . .|..-.-.+-..+ +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 445554 479999999998643 2 2322222333344 566 999999998
No 493
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.97 E-value=0.065 Score=51.61 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=40.2
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHH----HcCCCeEEEEEeccCc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSK----QIGIDNVVVYVNKADL 173 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~----~l~ip~iivvvNKiD~ 173 (463)
.+.+.||||||..... .+...+..||.+++++.+.......+.+.+..+. ..+++...+++|+.|.
T Consensus 115 ~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 5789999999853211 1123467899999998765432233333333322 2456655678999875
No 494
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.93 E-value=0.045 Score=48.35 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
.-++++|..|||||||+++|...+...|
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 4589999999999999999987655544
No 495
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.81 E-value=0.024 Score=52.86 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=64.5
Q ss_pred EEEEcC-CCCCHHHHHHHHHhhhHhcCccccccccc-----cCCChhhhhcC-----ceEEeeE---------EEEecCC
Q psy3124 48 VGTIGH-VDHGKTTLTAAITKVAAKIGKSKFITFDQ-----IDRAPEEKARG-----ITINIAH---------VEYSTNT 107 (463)
Q Consensus 48 I~i~G~-~~aGKSTLi~~L~~~~~~~g~~~~~~~~~-----~d~~~~e~~~g-----~Ti~~~~---------~~~~~~~ 107 (463)
|.++-+ -|+||||++-.|...+...|..-...... ..+.......| +.+.... ...+..+
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~ 83 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASG 83 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcC
Confidence 344433 68999999999988877766432211000 00000000011 1111100 0011234
Q ss_pred eeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc---HHHHHHHHHH---HHcCCCeEEEEEeccCc
Q psy3124 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM---PQTREHLLLS---KQIGIDNVVVYVNKADL 173 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~---~qt~e~l~~~---~~l~ip~iivvvNKiD~ 173 (463)
..+.|+||+|...-... ..+..+|.+|+=+-.+.-.. .+|.+++... ....+| .-|+.|++.-
T Consensus 84 ~d~VlvDleG~as~~~~--~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip-~~Vl~Tr~~~ 152 (231)
T PF07015_consen 84 FDFVLVDLEGGASELND--YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIP-AAVLFTRVPA 152 (231)
T ss_pred CCEEEEeCCCCCchhHH--HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCC-eeEEEecCCc
Confidence 57899999997654432 34457999877665554332 3344444332 234678 5688999974
No 496
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.74 E-value=0.047 Score=48.27 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
..|+++|..|+|||||+.+|...+...|
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3589999999999999999987654433
No 497
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.74 E-value=0.14 Score=49.35 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=39.1
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHH----HHcCCCeEEEEEeccC
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLS----KQIGIDNVVVYVNKAD 172 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~----~~l~ip~iivvvNKiD 172 (463)
.+.+.||||||..... .+...+..||.+|+++.+.......+...+... ...+++..-+++|+.|
T Consensus 117 ~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 5779999999864211 133446789999999987543222222222222 2345664457899976
No 498
>KOG0781|consensus
Probab=95.71 E-value=0.029 Score=56.96 Aligned_cols=151 Identities=17% Similarity=0.059 Sum_probs=80.0
Q ss_pred ccchhhhhhcccccccccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccc-------ccccc------------
Q psy3124 21 LNSYFKLLKYNCYSDDASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSK-------FITFD------------ 81 (463)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~-------~~~~~------------ 81 (463)
+..+.++.+..-.+. ..+.+..|++||-.|+||||-+..++-++.++.-.- ||...
T Consensus 359 P~~sVDlLRdI~sar-----~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~ 433 (587)
T KOG0781|consen 359 PQRSVDLLRDIMSAR-----RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLS 433 (587)
T ss_pred CCchhhHHHHHHHHH-----hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHH
Confidence 445555554443221 223577899999999999999999987776654211 11000
Q ss_pred -ccCCChh--hhhcCceEEe---eEE-EEecCCeeEEEEeCCChhhhHHHHHhh------cccCCEEEEEEeCCCCCc--
Q psy3124 82 -QIDRAPE--EKARGITINI---AHV-EYSTNTRHYAHTDCPGHADYIKNMISG------ASQMDGAIVVVAASEGQM-- 146 (463)
Q Consensus 82 -~~d~~~~--e~~~g~Ti~~---~~~-~~~~~~~~i~liDtPGh~~f~~~~~~~------~~~aD~ailVVda~~g~~-- 146 (463)
..+..-+ |+..|-.... ..+ .-...+..+.+|||+|...--...++. +..+|.+++|=-|--|-.
T Consensus 434 ~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv 513 (587)
T KOG0781|consen 434 ALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSV 513 (587)
T ss_pred HhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHH
Confidence 0000000 1111111000 000 001246789999999955433333222 356899999977665532
Q ss_pred HHHHHHHHHHHHcCCCeE--EEEEeccCcccH
Q psy3124 147 PQTREHLLLSKQIGIDNV--VVYVNKADLVDR 176 (463)
Q Consensus 147 ~qt~e~l~~~~~l~ip~i--ivvvNKiD~~~~ 176 (463)
.|.++.-..+....-|+. -++++|+|.++.
T Consensus 514 ~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 514 DQLKKFNRALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred HHHHHHHHHHhcCCCccccceEEEEeccchhh
Confidence 444444333333442222 267999999864
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.71 E-value=0.012 Score=43.10 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...+.|+.|+|||||+.++.-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998644
No 500
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.69 E-value=0.15 Score=48.17 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=39.5
Q ss_pred eeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHH-HHHHcC-CCeEEEEEeccCcc
Q psy3124 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLL-LSKQIG-IDNVVVYVNKADLV 174 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~-~~~~l~-ip~iivvvNKiD~~ 174 (463)
+.+.++|||+... ..+...+..+|.+++++.+..-....+...+. +....+ ..++-+++|+.|..
T Consensus 115 ~D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 3799999999433 34456678899999999886422222222222 222121 12256889999864
Done!