Query psy3124
Match_columns 463
No_of_seqs 334 out of 3305
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 17:03:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2e_A Elongation factor TU (E 100.0 5.1E-68 1.7E-72 539.9 45.3 386 43-431 1-389 (397)
2 2c78_A Elongation factor TU-A; 100.0 1.1E-67 3.8E-72 539.1 42.6 390 37-429 3-405 (405)
3 3j2k_7 ERF3, eukaryotic polype 100.0 3.1E-65 1.1E-69 525.0 44.8 376 40-428 12-438 (439)
4 3avx_A Elongation factor TS, e 100.0 3.9E-65 1.3E-69 557.7 40.0 393 37-432 288-681 (1289)
5 1f60_A Elongation factor EEF1A 100.0 2.4E-65 8.2E-70 528.6 36.3 381 42-430 4-442 (458)
6 1jny_A EF-1-alpha, elongation 100.0 1.2E-63 4E-68 513.5 36.6 378 42-430 3-430 (435)
7 3p26_A Elongation factor 1 alp 100.0 8.9E-63 3E-67 513.4 39.3 382 42-430 30-478 (483)
8 3izq_1 HBS1P, elongation facto 100.0 5.5E-62 1.9E-66 518.0 35.5 381 41-428 163-610 (611)
9 1r5b_A Eukaryotic peptide chai 100.0 1.6E-62 5.6E-67 508.5 30.4 374 42-429 40-467 (467)
10 3mca_A HBS1, elongation factor 100.0 2E-63 6.9E-68 527.7 23.9 376 41-428 173-592 (592)
11 1zun_B Sulfate adenylate trans 100.0 2.6E-58 8.9E-63 473.7 39.3 370 42-425 21-433 (434)
12 1wb1_A Translation elongation 100.0 1.6E-60 5.4E-65 495.0 21.0 361 41-429 15-395 (482)
13 1kk1_A EIF2gamma; initiation o 100.0 1.3E-57 4.3E-62 465.6 40.7 350 41-425 6-409 (410)
14 1s0u_A EIF-2-gamma, translatio 100.0 9.8E-58 3.3E-62 466.0 37.1 349 42-425 5-407 (408)
15 2elf_A Protein translation elo 100.0 5.6E-58 1.9E-62 460.2 30.4 334 47-424 23-369 (370)
16 3sjy_A Translation initiation 100.0 6.7E-55 2.3E-59 444.3 37.4 362 41-425 4-402 (403)
17 3vqt_A RF-3, peptide chain rel 100.0 2E-40 6.9E-45 348.1 23.5 271 44-332 30-401 (548)
18 2ywe_A GTP-binding protein LEP 100.0 2.1E-37 7.3E-42 326.2 27.2 265 44-332 5-281 (600)
19 3cb4_D GTP-binding protein LEP 100.0 1.2E-36 4.1E-41 321.1 27.4 268 44-332 3-279 (599)
20 4fn5_A EF-G 1, elongation fact 100.0 7.3E-37 2.5E-41 331.5 23.8 270 44-332 12-405 (709)
21 3j25_A Tetracycline resistance 100.0 7.4E-39 2.5E-43 342.7 2.6 266 45-331 2-330 (638)
22 3tr5_A RF-3, peptide chain rel 100.0 7.8E-36 2.7E-40 311.7 22.5 270 44-331 12-382 (528)
23 2h5e_A Peptide chain release f 100.0 2.2E-35 7.5E-40 308.6 22.7 271 44-332 12-384 (529)
24 2rdo_7 EF-G, elongation factor 100.0 1.7E-34 5.9E-39 311.7 29.2 270 43-331 8-401 (704)
25 3e1y_E Eukaryotic peptide chai 100.0 1.5E-34 5E-39 265.8 19.2 181 241-430 3-202 (204)
26 1dar_A EF-G, elongation factor 100.0 2.8E-33 9.7E-38 301.9 29.5 271 43-332 10-394 (691)
27 2dy1_A Elongation factor G; tr 100.0 1.9E-33 6.6E-38 302.2 22.7 267 44-332 8-367 (665)
28 2xex_A Elongation factor G; GT 100.0 6.9E-33 2.3E-37 299.0 24.8 270 43-331 8-393 (693)
29 1g7s_A Translation initiation 100.0 2.9E-33 9.8E-38 295.7 19.1 258 44-332 4-329 (594)
30 1zo1_I IF2, translation initia 100.0 4.4E-34 1.5E-38 294.9 9.9 249 44-331 3-258 (501)
31 3izy_P Translation initiation 100.0 1.1E-34 3.6E-39 301.9 2.5 250 45-333 4-261 (537)
32 1n0u_A EF-2, elongation factor 100.0 6.8E-30 2.3E-34 280.8 23.3 285 43-331 17-473 (842)
33 4dhe_A Probable GTP-binding pr 99.9 3E-21 1E-25 179.4 15.0 171 43-239 27-214 (223)
34 3iev_A GTP-binding protein ERA 99.8 1.1E-19 3.8E-24 177.9 15.8 165 40-236 5-182 (308)
35 3pqc_A Probable GTP-binding pr 99.8 2.4E-19 8.1E-24 162.4 16.3 160 43-235 21-193 (195)
36 1wf3_A GTP-binding protein; GT 99.8 2.9E-19 9.8E-24 174.2 16.6 158 44-236 6-173 (301)
37 2hjg_A GTP-binding protein ENG 99.8 9E-20 3.1E-24 187.1 13.4 147 44-210 174-333 (436)
38 2dyk_A GTP-binding protein; GT 99.8 2.8E-19 9.7E-24 156.7 14.4 153 46-235 2-161 (161)
39 2lkc_A Translation initiation 99.8 5.6E-20 1.9E-24 164.2 9.9 159 43-233 6-168 (178)
40 1svi_A GTP-binding protein YSX 99.8 4.9E-19 1.7E-23 160.7 15.8 160 43-234 21-193 (195)
41 2efe_B Small GTP-binding prote 99.8 2.9E-19 9.9E-24 160.0 13.0 163 42-236 9-175 (181)
42 1r2q_A RAS-related protein RAB 99.8 5E-19 1.7E-23 156.3 13.2 161 43-235 4-168 (170)
43 3i8s_A Ferrous iron transport 99.8 2.2E-19 7.5E-24 172.9 10.8 156 44-236 2-169 (274)
44 2fg5_A RAB-22B, RAS-related pr 99.8 7.8E-19 2.7E-23 159.4 13.7 162 43-236 21-186 (192)
45 2y8e_A RAB-protein 6, GH09086P 99.8 9.6E-19 3.3E-23 156.0 12.9 163 39-235 8-176 (179)
46 2hxs_A RAB-26, RAS-related pro 99.8 8.8E-19 3E-23 156.3 12.5 162 43-235 4-172 (178)
47 3iby_A Ferrous iron transport 99.8 3.8E-19 1.3E-23 169.4 10.5 151 46-233 2-164 (256)
48 4bas_A ADP-ribosylation factor 99.8 1.8E-18 6.3E-23 157.3 14.0 166 38-234 10-187 (199)
49 1upt_A ARL1, ADP-ribosylation 99.8 7E-19 2.4E-23 155.8 10.8 157 44-234 6-167 (171)
50 1z0j_A RAB-22, RAS-related pro 99.8 1.7E-18 5.7E-23 153.1 13.1 160 44-235 5-168 (170)
51 3t1o_A Gliding protein MGLA; G 99.8 6.8E-19 2.3E-23 159.6 10.6 166 41-233 10-189 (198)
52 1zd9_A ADP-ribosylation factor 99.8 1.9E-18 6.4E-23 156.4 13.4 161 42-235 19-184 (188)
53 2p5s_A RAS and EF-hand domain 99.8 7.2E-19 2.5E-23 160.6 10.7 166 39-234 22-195 (199)
54 4dcu_A GTP-binding protein ENG 99.8 8.6E-19 2.9E-23 180.8 12.5 161 43-233 193-366 (456)
55 2g6b_A RAS-related protein RAB 99.8 2.1E-18 7.3E-23 154.1 13.5 159 43-234 8-172 (180)
56 1ek0_A Protein (GTP-binding pr 99.8 1.3E-18 4.4E-23 153.7 11.9 162 44-235 2-168 (170)
57 1z0f_A RAB14, member RAS oncog 99.8 2.9E-18 9.8E-23 152.9 14.1 159 43-233 13-175 (179)
58 1zj6_A ADP-ribosylation factor 99.8 1E-18 3.5E-23 157.8 11.2 162 43-238 14-180 (187)
59 1r8s_A ADP-ribosylation factor 99.8 3.2E-18 1.1E-22 150.6 13.6 156 46-235 1-161 (164)
60 3tw8_B RAS-related protein RAB 99.8 2.9E-18 9.7E-23 153.2 12.9 158 43-234 7-169 (181)
61 1mh1_A RAC1; GTP-binding, GTPa 99.8 6E-18 2.1E-22 151.9 15.1 165 43-237 3-181 (186)
62 3tkl_A RAS-related protein RAB 99.8 3.5E-18 1.2E-22 155.0 13.7 158 43-234 14-177 (196)
63 3bc1_A RAS-related protein RAB 99.8 7.9E-18 2.7E-22 152.0 15.9 158 43-234 9-183 (195)
64 1kao_A RAP2A; GTP-binding prot 99.8 2.5E-18 8.6E-23 151.1 12.3 157 44-233 2-163 (167)
65 2bme_A RAB4A, RAS-related prot 99.8 6.3E-18 2.1E-22 152.0 15.0 158 43-234 8-171 (186)
66 3clv_A RAB5 protein, putative; 99.8 3.6E-18 1.2E-22 155.4 13.2 107 108-233 93-201 (208)
67 1u8z_A RAS-related protein RAL 99.8 6E-18 2.1E-22 148.9 14.2 157 44-233 3-164 (168)
68 1wms_A RAB-9, RAB9, RAS-relate 99.8 1E-17 3.6E-22 149.2 15.8 159 42-234 4-172 (177)
69 2gf9_A RAS-related protein RAB 99.8 2.5E-18 8.5E-23 155.5 11.9 160 43-234 20-183 (189)
70 3k53_A Ferrous iron transport 99.8 1.3E-18 4.5E-23 167.1 10.6 154 44-234 2-164 (271)
71 2il1_A RAB12; G-protein, GDP, 99.8 4.7E-18 1.6E-22 154.4 13.6 161 40-233 21-187 (192)
72 1ksh_A ARF-like protein 2; sma 99.8 1.8E-18 6E-23 155.9 10.5 158 43-234 16-178 (186)
73 1z08_A RAS-related protein RAB 99.8 4.7E-18 1.6E-22 150.3 12.9 160 43-234 4-167 (170)
74 3qq5_A Small GTP-binding prote 99.8 2.6E-19 8.8E-24 181.7 5.3 158 43-237 32-197 (423)
75 2erx_A GTP-binding protein DI- 99.8 6.2E-18 2.1E-22 149.5 13.6 159 45-236 3-167 (172)
76 4gzl_A RAS-related C3 botulinu 99.8 7.1E-18 2.4E-22 154.8 14.5 161 41-233 26-202 (204)
77 1ega_A Protein (GTP-binding pr 99.8 3.8E-18 1.3E-22 166.4 13.0 159 44-236 7-175 (301)
78 2nzj_A GTP-binding protein REM 99.8 7.1E-18 2.4E-22 149.9 13.3 158 44-234 3-167 (175)
79 1zbd_A Rabphilin-3A; G protein 99.8 7.5E-18 2.6E-22 154.1 13.7 158 44-233 7-168 (203)
80 2fu5_C RAS-related protein RAB 99.8 2.9E-18 1E-22 153.9 10.6 157 44-234 7-169 (183)
81 1z2a_A RAS-related protein RAB 99.8 3.2E-18 1.1E-22 150.9 10.7 158 44-233 4-164 (168)
82 1c1y_A RAS-related protein RAP 99.7 6E-18 2.1E-22 149.0 12.3 157 44-233 2-164 (167)
83 2h57_A ADP-ribosylation factor 99.7 4.8E-18 1.6E-22 153.7 12.0 160 43-234 19-185 (190)
84 1m2o_B GTP-binding protein SAR 99.7 5.4E-18 1.9E-22 153.8 12.2 157 43-233 21-189 (190)
85 2a9k_A RAS-related protein RAL 99.7 1.1E-17 3.9E-22 150.0 14.2 160 42-234 15-179 (187)
86 2wji_A Ferrous iron transport 99.7 5.6E-18 1.9E-22 150.0 11.9 153 45-234 3-163 (165)
87 3reg_A RHO-like small GTPase; 99.7 3.8E-18 1.3E-22 155.0 11.1 164 40-234 18-186 (194)
88 2oil_A CATX-8, RAS-related pro 99.7 4.9E-18 1.7E-22 154.0 11.8 160 42-233 22-185 (193)
89 2ew1_A RAS-related protein RAB 99.7 9E-18 3.1E-22 154.0 13.6 158 43-234 24-187 (201)
90 2h17_A ADP-ribosylation factor 99.7 3.4E-18 1.2E-22 153.6 10.5 157 42-232 18-179 (181)
91 3dz8_A RAS-related protein RAB 99.7 5.9E-18 2E-22 153.4 12.1 159 44-234 22-184 (191)
92 3kkq_A RAS-related protein M-R 99.7 5.4E-18 1.9E-22 152.1 11.7 160 41-233 14-179 (183)
93 2bov_A RAla, RAS-related prote 99.7 1.3E-17 4.5E-22 152.4 14.5 161 41-234 10-175 (206)
94 3a1s_A Iron(II) transport prot 99.7 4E-18 1.4E-22 162.5 11.4 154 44-234 4-165 (258)
95 1fzq_A ADP-ribosylation factor 99.7 1.3E-17 4.6E-22 149.9 14.1 159 43-235 14-177 (181)
96 2a5j_A RAS-related protein RAB 99.7 6.8E-18 2.3E-22 153.0 12.2 160 42-233 18-181 (191)
97 2hup_A RAS-related protein RAB 99.7 2E-17 6.8E-22 151.5 15.4 159 43-234 27-191 (201)
98 2j1l_A RHO-related GTP-binding 99.7 2.6E-17 8.9E-22 152.2 15.9 162 42-234 31-207 (214)
99 2b6h_A ADP-ribosylation factor 99.7 4.8E-18 1.6E-22 154.4 10.7 158 43-234 27-189 (192)
100 2f7s_A C25KG, RAS-related prot 99.7 8.8E-18 3E-22 155.3 12.5 158 43-234 23-197 (217)
101 1ky3_A GTP-binding protein YPT 99.7 1.3E-17 4.4E-22 149.0 13.2 159 43-233 6-175 (182)
102 2fh5_B SR-beta, signal recogni 99.7 1.7E-17 5.9E-22 153.0 14.2 168 42-232 4-212 (214)
103 4dsu_A GTPase KRAS, isoform 2B 99.7 1.4E-17 4.7E-22 149.9 13.2 157 44-234 3-164 (189)
104 3q72_A GTP-binding protein RAD 99.7 1.6E-17 5.6E-22 146.3 13.0 155 45-233 2-161 (166)
105 3bwd_D RAC-like GTP-binding pr 99.7 5.7E-18 2E-22 151.6 10.1 163 43-235 6-180 (182)
106 2ce2_X GTPase HRAS; signaling 99.7 1.7E-17 5.8E-22 145.5 13.0 156 44-233 2-162 (166)
107 1f6b_A SAR1; gtpases, N-termin 99.7 9.2E-18 3.1E-22 153.4 11.3 158 43-234 23-197 (198)
108 3con_A GTPase NRAS; structural 99.7 2.3E-17 8E-22 149.0 13.9 159 42-234 18-181 (190)
109 2xtp_A GTPase IMAP family memb 99.7 1.6E-17 5.4E-22 158.4 13.3 167 42-235 19-207 (260)
110 3t5g_A GTP-binding protein RHE 99.7 6E-18 2.1E-22 151.6 9.8 159 43-234 4-167 (181)
111 3t5d_A Septin-7; GTP-binding p 99.7 3.3E-17 1.1E-21 157.6 15.6 167 44-235 7-203 (274)
112 2gf0_A GTP-binding protein DI- 99.7 2E-17 6.9E-22 150.3 13.3 161 42-236 5-171 (199)
113 2fn4_A P23, RAS-related protei 99.7 6.5E-18 2.2E-22 150.8 9.9 157 43-234 7-170 (181)
114 1x3s_A RAS-related protein RAB 99.7 1.2E-17 4.2E-22 151.1 11.7 160 43-235 13-177 (195)
115 1g16_A RAS-related protein SEC 99.7 8.1E-18 2.8E-22 148.6 10.0 157 45-234 3-163 (170)
116 1z06_A RAS-related protein RAB 99.7 1.8E-17 6.1E-22 149.9 12.5 164 42-234 17-186 (189)
117 1mky_A Probable GTP-binding pr 99.7 4.1E-17 1.4E-21 167.4 16.7 154 46-235 2-165 (439)
118 3cpj_B GTP-binding protein YPT 99.7 9.9E-18 3.4E-22 156.0 11.0 161 43-235 11-175 (223)
119 2fv8_A H6, RHO-related GTP-bin 99.7 3E-17 1E-21 150.9 13.9 164 42-235 22-199 (207)
120 2bcg_Y Protein YP2, GTP-bindin 99.7 1E-17 3.5E-22 153.6 10.8 159 44-234 7-169 (206)
121 2o52_A RAS-related protein RAB 99.7 9.7E-18 3.3E-22 153.3 10.5 160 43-234 23-186 (200)
122 1vg8_A RAS-related protein RAB 99.7 1.7E-17 5.8E-22 151.9 12.0 158 43-234 6-173 (207)
123 2atx_A Small GTP binding prote 99.7 1E-17 3.5E-22 152.0 10.2 162 43-234 16-191 (194)
124 2hjg_A GTP-binding protein ENG 99.7 9.2E-18 3.2E-22 172.1 11.1 155 45-236 3-165 (436)
125 3llu_A RAS-related GTP-binding 99.7 6.6E-17 2.3E-21 147.2 15.5 164 40-232 15-193 (196)
126 3oes_A GTPase rhebl1; small GT 99.7 7.7E-18 2.6E-22 154.0 9.3 161 41-234 20-185 (201)
127 1moz_A ARL1, ADP-ribosylation 99.7 6.8E-18 2.3E-22 151.4 8.8 158 43-234 16-178 (183)
128 2x77_A ADP-ribosylation factor 99.7 3.9E-18 1.3E-22 154.1 7.0 158 43-234 20-182 (189)
129 2wjg_A FEOB, ferrous iron tran 99.7 1.5E-17 5E-22 149.9 10.8 157 43-236 5-169 (188)
130 3cph_A RAS-related protein SEC 99.7 1.9E-17 6.5E-22 152.3 11.4 157 43-234 18-180 (213)
131 2j0v_A RAC-like GTP-binding pr 99.7 1.8E-17 6.2E-22 152.6 11.1 166 42-237 6-181 (212)
132 3gee_A MNME, tRNA modification 99.7 1.9E-17 6.5E-22 170.7 12.3 156 44-235 232-397 (476)
133 2gco_A H9, RHO-related GTP-bin 99.7 6.4E-17 2.2E-21 147.9 14.3 160 43-232 23-196 (201)
134 3b1v_A Ferrous iron uptake tra 99.7 1.3E-17 4.5E-22 160.0 9.9 153 45-235 3-163 (272)
135 1mky_A Probable GTP-binding pr 99.7 5.4E-17 1.8E-21 166.6 14.9 160 44-233 179-352 (439)
136 3q85_A GTP-binding protein REM 99.7 4.4E-17 1.5E-21 144.0 12.3 157 45-233 2-164 (169)
137 4djt_A GTP-binding nuclear pro 99.7 7E-18 2.4E-22 156.1 7.1 159 42-234 8-173 (218)
138 2qu8_A Putative nucleolar GTP- 99.7 1.6E-16 5.6E-21 148.3 16.3 162 43-234 27-203 (228)
139 2yc2_C IFT27, small RAB-relate 99.7 2E-17 6.9E-22 151.3 9.8 159 43-233 18-189 (208)
140 3lxw_A GTPase IMAP family memb 99.7 7.9E-17 2.7E-21 152.6 13.1 163 42-235 18-207 (247)
141 3r7w_A Gtpase1, GTP-binding pr 99.7 4E-16 1.4E-20 152.5 18.4 159 45-232 3-177 (307)
142 3ihw_A Centg3; RAS, centaurin, 99.7 8.6E-17 2.9E-21 145.1 11.9 160 38-233 13-177 (184)
143 1m7b_A RND3/RHOE small GTP-bin 99.7 2.5E-16 8.6E-21 141.7 14.8 159 43-232 5-179 (184)
144 2gj8_A MNME, tRNA modification 99.7 4.1E-17 1.4E-21 145.6 9.5 153 44-236 3-166 (172)
145 3gj0_A GTP-binding nuclear pro 99.7 1.5E-17 5.2E-22 154.3 6.8 160 41-234 11-173 (221)
146 4dcu_A GTP-binding protein ENG 99.7 6.8E-17 2.3E-21 166.6 12.1 156 43-235 21-184 (456)
147 3o47_A ADP-ribosylation factor 99.7 1.6E-17 5.5E-22 164.0 7.0 157 44-234 164-325 (329)
148 2q3h_A RAS homolog gene family 99.7 2.8E-16 9.7E-21 143.2 14.8 162 41-234 16-193 (201)
149 4dkx_A RAS-related protein RAB 99.7 1.3E-16 4.5E-21 147.9 12.3 160 42-235 10-175 (216)
150 2atv_A RERG, RAS-like estrogen 99.7 1.9E-16 6.4E-21 144.0 13.1 158 43-234 26-189 (196)
151 3q3j_B RHO-related GTP-binding 99.7 1.3E-16 4.5E-21 147.5 12.0 162 42-234 24-201 (214)
152 3l0i_B RAS-related protein RAB 99.7 2.4E-18 8.1E-23 157.2 -0.4 161 43-235 31-195 (199)
153 3cbq_A GTP-binding protein REM 99.7 2E-16 6.9E-21 144.1 11.1 161 43-235 21-187 (195)
154 3c5c_A RAS-like protein 12; GD 99.7 2.6E-16 8.8E-21 142.2 11.7 159 41-233 17-183 (187)
155 1gwn_A RHO-related GTP-binding 99.7 9.1E-16 3.1E-20 141.0 14.6 159 43-232 26-200 (205)
156 2cxx_A Probable GTP-binding pr 99.7 4.6E-16 1.6E-20 140.1 12.1 153 46-234 2-182 (190)
157 1xzp_A Probable tRNA modificat 99.7 1.5E-16 5.3E-21 164.0 10.1 152 45-234 243-403 (482)
158 2iwr_A Centaurin gamma 1; ANK 99.7 2.7E-16 9.2E-21 140.3 10.4 155 43-233 5-166 (178)
159 3th5_A RAS-related C3 botulinu 99.5 9E-18 3.1E-22 153.8 0.0 158 43-232 28-201 (204)
160 3lvq_E ARF-GAP with SH3 domain 99.6 4.6E-16 1.6E-20 162.2 11.9 159 43-235 320-483 (497)
161 3lxx_A GTPase IMAP family memb 99.6 2.9E-15 1E-19 140.9 15.8 162 42-234 26-212 (239)
162 3geh_A MNME, tRNA modification 99.6 2.7E-16 9.1E-21 161.6 9.0 154 44-236 223-384 (462)
163 2wkq_A NPH1-1, RAS-related C3 99.6 2.3E-15 8E-20 148.0 13.8 159 44-234 154-328 (332)
164 2zej_A Dardarin, leucine-rich 99.6 2.4E-15 8.1E-20 135.4 12.4 165 45-235 2-177 (184)
165 2g3y_A GTP-binding protein GEM 99.6 9.3E-15 3.2E-19 134.9 14.6 161 43-234 35-201 (211)
166 2qtf_A Protein HFLX, GTP-bindi 99.6 5.5E-15 1.9E-19 147.5 13.8 162 45-237 179-355 (364)
167 1pui_A ENGB, probable GTP-bind 99.6 1.6E-14 5.5E-19 132.5 15.8 161 43-234 24-197 (210)
168 1lnz_A SPO0B-associated GTP-bi 99.6 1.3E-15 4.6E-20 150.5 9.1 155 46-236 159-330 (342)
169 2e87_A Hypothetical protein PH 99.6 3.1E-14 1.1E-18 142.0 17.2 156 43-234 165-334 (357)
170 1nrj_B SR-beta, signal recogni 99.6 3.2E-15 1.1E-19 138.1 8.3 142 43-210 10-168 (218)
171 3p32_A Probable GTPase RV1496/ 99.6 7.9E-15 2.7E-19 146.2 11.3 175 43-235 77-283 (355)
172 2qag_A Septin-2, protein NEDD5 99.6 1.1E-14 3.8E-19 145.3 11.3 174 44-238 36-239 (361)
173 2j69_A Bacterial dynamin-like 99.6 2.5E-14 8.6E-19 154.3 14.7 126 108-234 174-323 (695)
174 3dpu_A RAB family protein; roc 99.5 2.5E-15 8.6E-20 158.0 6.0 160 43-236 39-208 (535)
175 3def_A T7I23.11 protein; chlor 99.5 1.9E-14 6.6E-19 137.3 10.8 117 43-174 34-164 (262)
176 2cjw_A GTP-binding protein GEM 99.5 4.7E-14 1.6E-18 128.0 12.7 161 43-234 4-170 (192)
177 2p67_A LAO/AO transport system 99.5 3.4E-14 1.2E-18 140.8 12.6 174 43-234 54-259 (341)
178 1jwy_B Dynamin A GTPase domain 99.5 1.7E-14 5.9E-19 141.1 9.6 119 106-236 129-262 (315)
179 2aka_B Dynamin-1; fusion prote 99.5 2E-14 6.9E-19 139.4 9.6 175 43-232 24-249 (299)
180 2f9l_A RAB11B, member RAS onco 99.5 6.1E-14 2.1E-18 127.8 12.0 158 45-234 5-166 (199)
181 1h65_A Chloroplast outer envel 99.5 8.4E-14 2.9E-18 133.4 13.4 178 43-236 37-245 (270)
182 3r7w_B Gtpase2, GTP-binding pr 99.5 6E-14 2.1E-18 136.5 11.0 159 47-234 1-172 (331)
183 2ged_A SR-beta, signal recogni 99.5 1.3E-14 4.5E-19 131.1 5.5 128 43-191 46-186 (193)
184 1wxq_A GTP-binding protein; st 99.4 2.2E-13 7.7E-18 137.3 10.6 83 46-144 1-114 (397)
185 3c5h_A Glucocorticoid receptor 99.4 9.6E-14 3.3E-18 131.9 7.1 84 131-233 162-252 (255)
186 2www_A Methylmalonic aciduria 99.4 9.5E-13 3.2E-17 130.7 14.2 171 44-234 73-277 (349)
187 1oix_A RAS-related protein RAB 99.4 4.1E-13 1.4E-17 121.6 10.3 155 44-232 28-188 (191)
188 2qpt_A EH domain-containing pr 99.4 7.5E-13 2.6E-17 139.0 12.0 79 108-187 154-244 (550)
189 2wsm_A Hydrogenase expression/ 99.4 4.8E-13 1.7E-17 123.7 9.2 164 44-235 29-213 (221)
190 1yrb_A ATP(GTP)binding protein 99.4 2.2E-11 7.6E-16 115.5 17.9 112 108-234 109-255 (262)
191 1udx_A The GTP-binding protein 99.4 3E-12 1E-16 129.4 12.0 154 46-235 158-324 (416)
192 2x2e_A Dynamin-1; nitration, h 99.3 1.1E-12 3.8E-17 130.6 6.5 172 44-232 30-254 (353)
193 3t34_A Dynamin-related protein 99.3 5.2E-12 1.8E-16 126.0 8.8 97 106-210 134-245 (360)
194 2qag_C Septin-7; cell cycle, c 99.3 5.1E-11 1.8E-15 120.5 14.7 163 44-232 30-223 (418)
195 3zvr_A Dynamin-1; hydrolase, D 99.3 3.3E-12 1.1E-16 137.2 6.1 160 44-210 50-262 (772)
196 2qm8_A GTPase/ATPase; G protei 99.2 9.3E-11 3.2E-15 115.7 11.8 173 44-234 54-259 (337)
197 2qnr_A Septin-2, protein NEDD5 99.1 2.4E-10 8.2E-15 111.0 11.9 151 44-210 17-199 (301)
198 4a9a_A Ribosome-interacting GT 99.1 6.9E-11 2.4E-15 117.6 6.0 113 43-174 70-195 (376)
199 1jal_A YCHF protein; nucleotid 99.1 3.3E-10 1.1E-14 112.1 9.6 82 46-143 3-108 (363)
200 1xe1_A Hypothetical protein PF 99.1 1.1E-09 3.7E-14 88.4 10.5 82 242-329 32-113 (116)
201 2j37_W Signal recognition part 99.0 4.6E-10 1.6E-14 115.9 10.1 130 43-175 99-254 (504)
202 2qag_B Septin-6, protein NEDD5 99.0 1.6E-09 5.6E-14 109.1 12.8 145 44-207 41-217 (427)
203 4fid_A G protein alpha subunit 99.0 6.3E-09 2.1E-13 102.0 15.0 128 94-232 147-324 (340)
204 2hf9_A Probable hydrogenase ni 99.0 1.7E-09 5.8E-14 100.0 9.8 166 44-233 37-221 (226)
205 2dby_A GTP-binding protein; GD 99.0 8.3E-10 2.8E-14 109.8 7.8 84 46-143 2-111 (368)
206 3sop_A Neuronal-specific septi 99.0 4.8E-09 1.7E-13 100.1 12.7 143 45-195 2-174 (270)
207 3ohm_A Guanine nucleotide-bind 98.9 1.1E-08 3.8E-13 99.8 13.2 129 94-233 153-315 (327)
208 2ohf_A Protein OLA1, GTP-bindi 98.7 1.8E-08 6.3E-13 100.6 8.4 84 44-143 21-128 (396)
209 1cip_A Protein (guanine nucleo 98.7 2.8E-08 9.6E-13 98.3 9.6 129 94-233 179-341 (353)
210 1tq4_A IIGP1, interferon-induc 98.7 3.2E-07 1.1E-11 92.4 17.4 163 45-236 69-253 (413)
211 1zcb_A G alpha I/13; GTP-bindi 98.6 7.1E-08 2.4E-12 95.7 8.8 123 99-232 192-349 (362)
212 3ec1_A YQEH GTPase; atnos1, at 98.6 1.9E-09 6.6E-14 107.6 -3.3 118 45-176 162-289 (369)
213 2v3c_C SRP54, signal recogniti 98.6 1.6E-07 5.3E-12 95.5 10.2 129 44-175 98-252 (432)
214 3dm5_A SRP54, signal recogniti 98.6 3.2E-07 1.1E-11 92.8 12.2 128 44-176 99-254 (443)
215 1u0l_A Probable GTPase ENGC; p 98.6 1.2E-07 4E-12 92.0 8.6 103 109-231 64-168 (301)
216 3h2y_A GTPase family protein; 98.5 5.5E-09 1.9E-13 104.2 -1.5 123 45-180 160-292 (368)
217 1j8m_F SRP54, signal recogniti 98.4 1.1E-06 3.9E-11 84.7 11.5 126 45-175 98-253 (297)
218 3kl4_A SRP54, signal recogniti 98.4 1.2E-06 4.1E-11 88.6 11.8 126 44-175 96-252 (433)
219 1azs_C GS-alpha; complex (lyas 98.4 9.9E-07 3.4E-11 88.3 10.0 76 99-175 208-298 (402)
220 1puj_A YLQF, conserved hypothe 98.4 8.8E-07 3E-11 84.9 8.6 100 112-234 3-104 (282)
221 2xxa_A Signal recognition part 98.3 2.5E-06 8.6E-11 86.6 10.7 126 43-174 98-253 (433)
222 2yv5_A YJEQ protein; hydrolase 98.3 4.2E-06 1.4E-10 81.0 11.0 88 127-231 75-164 (302)
223 2xtz_A Guanine nucleotide-bind 98.2 1.6E-06 5.6E-11 85.6 8.1 115 107-232 182-341 (354)
224 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.3E-06 4.4E-11 87.3 7.1 84 44-143 19-127 (392)
225 1d1n_A Initiation factor 2; be 98.2 3.3E-06 1.1E-10 66.2 7.4 80 247-328 9-89 (99)
226 3cnl_A YLQF, putative uncharac 98.1 2.1E-06 7.3E-11 81.3 4.8 94 115-233 4-98 (262)
227 2yhs_A FTSY, cell division pro 98.0 1.4E-05 4.9E-10 81.6 10.3 124 44-174 292-451 (503)
228 2crv_A IF-2MT, translation ini 98.0 1.5E-05 5E-10 64.7 8.2 82 246-329 12-98 (120)
229 3e70_C DPA, signal recognition 98.0 1.5E-05 5.3E-10 77.8 9.3 128 43-174 127-281 (328)
230 3ec1_A YQEH GTPase; atnos1, at 98.0 6.7E-06 2.3E-10 81.8 6.7 107 110-233 51-159 (369)
231 1f5n_A Interferon-induced guan 98.0 3.2E-06 1.1E-10 88.7 4.3 106 42-158 35-147 (592)
232 1zu4_A FTSY; GTPase, signal re 98.0 2E-05 6.7E-10 76.8 8.9 128 43-175 103-268 (320)
233 3h2y_A GTPase family protein; 97.9 2.1E-05 7.1E-10 78.2 9.1 104 113-233 52-157 (368)
234 1t9h_A YLOQ, probable GTPase E 97.9 1.8E-05 6.1E-10 76.5 7.5 77 128-210 83-161 (307)
235 1rj9_A FTSY, signal recognitio 97.9 6.4E-05 2.2E-09 72.6 10.7 126 44-174 101-260 (304)
236 1puj_A YLQF, conserved hypothe 97.9 1.4E-05 4.8E-10 76.4 5.9 58 44-119 119-176 (282)
237 1vma_A Cell division protein F 97.9 4.8E-05 1.6E-09 73.5 9.6 125 44-174 103-262 (306)
238 4dzz_A Plasmid partitioning pr 97.8 9.1E-05 3.1E-09 66.7 10.8 122 47-174 3-143 (206)
239 3szr_A Interferon-induced GTP- 97.8 8.5E-05 2.9E-09 78.8 11.2 69 107-176 146-229 (608)
240 2ffh_A Protein (FFH); SRP54, s 97.7 8.4E-05 2.9E-09 75.0 9.7 125 44-174 97-250 (425)
241 3l82_B F-box only protein 4; T 97.7 3.7E-05 1.3E-09 69.4 6.1 103 117-235 111-222 (227)
242 1zo1_I IF2, translation initia 97.6 0.00013 4.5E-09 75.1 9.7 104 223-329 388-492 (501)
243 2px0_A Flagellar biosynthesis 97.5 6.9E-05 2.4E-09 72.1 5.5 129 44-175 104-253 (296)
244 3b9q_A Chloroplast SRP recepto 97.5 0.00056 1.9E-08 65.9 11.0 127 44-174 99-259 (302)
245 3kjh_A CO dehydrogenase/acetyl 97.5 0.00012 4.3E-09 67.8 6.2 67 105-173 129-195 (254)
246 3cnl_A YLQF, putative uncharac 97.5 5.5E-05 1.9E-09 71.5 3.5 57 46-120 100-156 (262)
247 2ph1_A Nucleotide-binding prot 97.4 0.0011 3.8E-08 62.2 12.0 68 106-173 127-194 (262)
248 1ls1_A Signal recognition part 97.4 0.00043 1.5E-08 66.5 9.1 128 44-175 97-251 (295)
249 3izy_P Translation initiation 97.4 0.0007 2.4E-08 70.3 11.0 106 221-328 425-534 (537)
250 2og2_A Putative signal recogni 97.4 0.00067 2.3E-08 66.9 10.0 125 44-174 156-316 (359)
251 2rcn_A Probable GTPase ENGC; Y 97.4 0.0011 3.7E-08 65.3 11.4 85 128-230 127-213 (358)
252 3cwq_A Para family chromosome 97.3 0.0018 6E-08 58.7 11.2 123 47-175 2-134 (209)
253 3l2o_B F-box only protein 4; s 97.2 0.00022 7.6E-09 67.5 4.5 105 115-235 194-307 (312)
254 1g7s_A Translation initiation 97.1 0.0021 7.2E-08 67.7 10.8 84 244-330 463-549 (594)
255 3q5d_A Atlastin-1; G protein, 97.1 0.00097 3.3E-08 67.5 7.7 28 42-69 64-91 (447)
256 1hyq_A MIND, cell division inh 97.1 0.0026 8.8E-08 59.5 10.2 67 107-175 110-176 (263)
257 3la6_A Tyrosine-protein kinase 96.9 0.002 6.7E-08 61.6 8.0 67 107-174 201-267 (286)
258 3end_A Light-independent proto 96.9 0.0048 1.6E-07 59.2 10.5 66 107-173 156-225 (307)
259 1g3q_A MIND ATPase, cell divis 96.9 0.003 1E-07 58.0 8.6 66 107-174 111-176 (237)
260 3cio_A ETK, tyrosine-protein k 96.8 0.009 3.1E-07 57.3 12.2 67 107-174 213-279 (299)
261 3bfv_A CAPA1, CAPB2, membrane 96.8 0.0052 1.8E-07 58.1 10.3 67 107-174 191-257 (271)
262 3ea0_A ATPase, para family; al 96.7 0.002 6.7E-08 59.5 6.2 66 107-174 118-185 (245)
263 2oze_A ORF delta'; para, walke 96.7 0.012 4.1E-07 56.0 11.8 67 107-175 154-226 (298)
264 3q9l_A Septum site-determining 96.6 0.0059 2E-07 56.8 8.7 66 107-174 113-186 (260)
265 1nij_A Hypothetical protein YJ 96.5 0.0019 6.6E-08 62.6 4.8 24 45-68 4-27 (318)
266 3k9g_A PF-32 protein; ssgcid, 96.3 0.013 4.5E-07 54.8 9.3 66 106-174 143-210 (267)
267 2xj4_A MIPZ; replication, cell 96.2 0.0022 7.6E-08 61.0 3.2 34 107-142 103-136 (286)
268 1t9h_A YLOQ, probable GTPase E 95.8 0.0017 5.9E-08 62.5 0.5 25 45-69 173-197 (307)
269 1cp2_A CP2, nitrogenase iron p 95.8 0.044 1.5E-06 51.1 10.3 66 107-174 115-187 (269)
270 1ye8_A Protein THEP1, hypothet 95.8 0.0054 1.9E-07 54.0 3.5 24 46-69 1-24 (178)
271 3qxc_A Dethiobiotin synthetase 95.6 0.11 3.7E-06 48.0 11.8 102 107-231 131-239 (242)
272 2afh_E Nitrogenase iron protei 95.6 0.02 6.8E-07 54.3 6.9 65 107-173 118-189 (289)
273 2yv5_A YJEQ protein; hydrolase 95.4 0.01 3.6E-07 56.9 4.4 22 45-66 165-186 (302)
274 1lvg_A Guanylate kinase, GMP k 95.4 0.0069 2.4E-07 54.2 2.8 24 46-69 5-28 (198)
275 1kgd_A CASK, peripheral plasma 95.3 0.0085 2.9E-07 52.7 3.1 24 46-69 6-29 (180)
276 3c8u_A Fructokinase; YP_612366 95.3 0.014 4.6E-07 52.6 4.3 29 43-71 20-48 (208)
277 1htw_A HI0065; nucleotide-bind 95.2 0.0099 3.4E-07 51.3 3.1 30 45-74 33-62 (158)
278 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.7E-07 53.2 3.2 25 45-69 20-44 (207)
279 3a00_A Guanylate kinase, GMP k 95.1 0.011 3.8E-07 52.2 3.1 24 47-70 3-26 (186)
280 3asz_A Uridine kinase; cytidin 95.1 0.013 4.5E-07 52.6 3.6 26 44-69 5-30 (211)
281 1bif_A 6-phosphofructo-2-kinas 95.0 0.032 1.1E-06 56.9 6.8 104 44-162 38-151 (469)
282 3ug7_A Arsenical pump-driving 95.0 0.66 2.2E-05 45.2 16.0 43 132-174 237-279 (349)
283 3tr0_A Guanylate kinase, GMP k 95.0 0.014 4.9E-07 51.9 3.7 24 46-69 8-31 (205)
284 1zp6_A Hypothetical protein AT 95.0 0.015 5.1E-07 51.2 3.7 24 45-68 9-32 (191)
285 4eun_A Thermoresistant glucoki 95.0 0.014 4.9E-07 52.1 3.6 26 44-69 28-53 (200)
286 3fgn_A Dethiobiotin synthetase 94.9 0.44 1.5E-05 44.2 13.7 126 45-172 26-197 (251)
287 3zq6_A Putative arsenical pump 94.9 1 3.6E-05 43.2 16.9 42 133-174 223-264 (324)
288 1z6g_A Guanylate kinase; struc 94.8 0.014 4.9E-07 53.0 3.2 24 46-69 24-47 (218)
289 4ido_A Atlastin-1; GTPase, GTP 94.8 0.056 1.9E-06 54.5 7.6 112 42-156 64-193 (457)
290 1s96_A Guanylate kinase, GMP k 94.8 0.015 5.2E-07 53.0 3.2 26 45-70 16-41 (219)
291 1ihu_A Arsenical pump-driving 94.7 0.15 5.2E-06 53.4 11.2 42 133-174 199-240 (589)
292 1knq_A Gluconate kinase; ALFA/ 94.7 0.023 8E-07 49.2 4.1 24 45-68 8-31 (175)
293 3tif_A Uncharacterized ABC tra 94.6 0.015 5.1E-07 53.7 2.8 24 46-69 32-55 (235)
294 2j41_A Guanylate kinase; GMP, 94.6 0.022 7.4E-07 50.8 3.7 25 45-69 6-30 (207)
295 3ney_A 55 kDa erythrocyte memb 94.5 0.023 8E-07 50.8 3.8 26 44-69 18-43 (197)
296 3ec2_A DNA replication protein 94.5 0.015 5E-07 50.9 2.4 26 45-70 38-63 (180)
297 2pcj_A ABC transporter, lipopr 94.5 0.018 6.1E-07 52.7 3.0 24 46-69 31-54 (224)
298 2i3b_A HCR-ntpase, human cance 94.5 0.024 8.3E-07 50.4 3.8 27 47-73 3-29 (189)
299 1xjc_A MOBB protein homolog; s 94.5 0.027 9.3E-07 49.1 4.0 29 45-73 4-32 (169)
300 3b85_A Phosphate starvation-in 94.5 0.022 7.6E-07 51.4 3.5 29 46-74 23-51 (208)
301 3uie_A Adenylyl-sulfate kinase 94.4 0.032 1.1E-06 49.7 4.5 30 44-73 24-53 (200)
302 3tau_A Guanylate kinase, GMP k 94.4 0.024 8.3E-07 51.0 3.7 25 45-69 8-32 (208)
303 4gp7_A Metallophosphoesterase; 94.4 0.02 6.7E-07 49.9 3.0 21 46-66 10-30 (171)
304 2onk_A Molybdate/tungstate ABC 94.4 0.022 7.5E-07 52.7 3.3 24 46-69 25-48 (240)
305 2ghi_A Transport protein; mult 94.4 0.021 7.1E-07 53.5 3.2 25 46-70 47-71 (260)
306 1kag_A SKI, shikimate kinase I 94.3 0.023 7.9E-07 49.1 3.2 23 46-68 5-27 (173)
307 1np6_A Molybdopterin-guanine d 94.3 0.032 1.1E-06 48.8 4.1 28 45-72 6-33 (174)
308 2cbz_A Multidrug resistance-as 94.2 0.022 7.7E-07 52.5 3.0 24 46-69 32-55 (237)
309 2bdt_A BH3686; alpha-beta prot 94.2 0.026 9.1E-07 49.6 3.4 22 46-67 3-24 (189)
310 2pze_A Cystic fibrosis transme 94.2 0.023 7.8E-07 52.2 3.0 24 46-69 35-58 (229)
311 1sgw_A Putative ABC transporte 94.2 0.022 7.5E-07 51.7 2.8 23 47-69 37-59 (214)
312 1g6h_A High-affinity branched- 94.2 0.023 8E-07 53.1 3.0 24 46-69 34-57 (257)
313 3gfo_A Cobalt import ATP-bindi 94.2 0.021 7.3E-07 53.9 2.8 24 46-69 35-58 (275)
314 1mv5_A LMRA, multidrug resista 94.2 0.024 8.1E-07 52.6 3.0 25 45-69 28-52 (243)
315 1b0u_A Histidine permease; ABC 94.1 0.022 7.5E-07 53.4 2.8 24 46-69 33-56 (262)
316 2woo_A ATPase GET3; tail-ancho 94.1 2.3 7.8E-05 40.8 17.4 40 133-172 222-261 (329)
317 4g1u_C Hemin import ATP-bindin 94.1 0.024 8E-07 53.4 3.0 24 46-69 38-61 (266)
318 2ff7_A Alpha-hemolysin translo 94.1 0.025 8.5E-07 52.6 3.0 24 46-69 36-59 (247)
319 3aez_A Pantothenate kinase; tr 94.1 0.038 1.3E-06 53.2 4.4 29 43-71 88-116 (312)
320 2d2e_A SUFC protein; ABC-ATPas 94.1 0.028 9.7E-07 52.3 3.4 23 46-68 30-52 (250)
321 1ji0_A ABC transporter; ATP bi 94.1 0.026 8.8E-07 52.2 3.0 24 46-69 33-56 (240)
322 3kb2_A SPBC2 prophage-derived 94.0 0.03 1E-06 48.1 3.3 23 46-68 2-24 (173)
323 1ukz_A Uridylate kinase; trans 94.0 0.04 1.4E-06 49.0 4.2 26 43-68 13-38 (203)
324 3lw7_A Adenylate kinase relate 94.0 0.029 1E-06 48.1 3.2 20 46-65 2-21 (179)
325 2rcn_A Probable GTPase ENGC; Y 94.0 0.027 9.3E-07 55.2 3.2 24 46-69 216-239 (358)
326 2yvu_A Probable adenylyl-sulfa 94.0 0.05 1.7E-06 47.7 4.7 29 44-72 12-40 (186)
327 2olj_A Amino acid ABC transpor 94.0 0.027 9.3E-07 52.8 3.0 24 46-69 51-74 (263)
328 2v9p_A Replication protein E1; 94.0 0.031 1.1E-06 53.6 3.5 25 45-69 126-150 (305)
329 2qi9_C Vitamin B12 import ATP- 93.9 0.028 9.5E-07 52.3 3.0 25 46-70 27-51 (249)
330 2if2_A Dephospho-COA kinase; a 93.9 0.032 1.1E-06 49.7 3.3 22 46-67 2-23 (204)
331 1vpl_A ABC transporter, ATP-bi 93.9 0.028 9.5E-07 52.5 3.0 24 46-69 42-65 (256)
332 2f1r_A Molybdopterin-guanine d 93.9 0.02 6.9E-07 50.0 1.9 27 46-72 3-29 (171)
333 2zu0_C Probable ATP-dependent 93.9 0.032 1.1E-06 52.5 3.3 23 46-68 47-69 (267)
334 2qor_A Guanylate kinase; phosp 93.8 0.03 1E-06 50.1 3.0 25 45-69 12-36 (204)
335 1nks_A Adenylate kinase; therm 93.8 0.043 1.5E-06 48.0 3.9 25 46-70 2-26 (194)
336 1kht_A Adenylate kinase; phosp 93.8 0.042 1.4E-06 48.1 3.9 25 46-70 4-28 (192)
337 1jjv_A Dephospho-COA kinase; P 93.8 0.038 1.3E-06 49.3 3.6 22 46-67 3-24 (206)
338 2ixe_A Antigen peptide transpo 93.8 0.031 1.1E-06 52.7 3.0 24 46-69 46-69 (271)
339 3gd7_A Fusion complex of cysti 93.8 0.034 1.2E-06 55.2 3.5 29 46-74 48-76 (390)
340 2eyu_A Twitching motility prot 93.8 0.045 1.5E-06 51.3 4.1 28 44-71 24-51 (261)
341 2ihy_A ABC transporter, ATP-bi 93.7 0.031 1.1E-06 52.9 3.0 24 46-69 48-71 (279)
342 2yz2_A Putative ABC transporte 93.7 0.031 1.1E-06 52.5 3.0 24 46-69 34-57 (266)
343 1cke_A CK, MSSA, protein (cyti 93.7 0.036 1.2E-06 50.2 3.4 23 46-68 6-28 (227)
344 2bbw_A Adenylate kinase 4, AK4 93.7 0.035 1.2E-06 51.2 3.3 22 45-66 27-48 (246)
345 2jaq_A Deoxyguanosine kinase; 93.7 0.038 1.3E-06 48.9 3.4 22 47-68 2-23 (205)
346 2nq2_C Hypothetical ABC transp 93.7 0.032 1.1E-06 52.0 3.0 24 46-69 32-55 (253)
347 2jeo_A Uridine-cytidine kinase 93.6 0.043 1.5E-06 50.6 3.8 25 45-69 25-49 (245)
348 1ly1_A Polynucleotide kinase; 93.6 0.043 1.5E-06 47.5 3.6 22 46-67 3-24 (181)
349 3t61_A Gluconokinase; PSI-biol 93.6 0.037 1.3E-06 49.3 3.1 24 45-68 18-41 (202)
350 3vaa_A Shikimate kinase, SK; s 93.6 0.045 1.6E-06 48.7 3.7 24 45-68 25-48 (199)
351 2qt1_A Nicotinamide riboside k 93.6 0.052 1.8E-06 48.5 4.1 25 44-68 20-44 (207)
352 2plr_A DTMP kinase, probable t 93.6 0.05 1.7E-06 48.5 4.0 26 45-70 4-29 (213)
353 1rz3_A Hypothetical protein rb 93.6 0.056 1.9E-06 48.2 4.3 27 44-70 21-47 (201)
354 1ihu_A Arsenical pump-driving 93.5 0.54 1.9E-05 49.2 12.5 44 131-174 489-532 (589)
355 2b8t_A Thymidine kinase; deoxy 93.5 0.22 7.5E-06 45.3 8.2 29 45-73 12-40 (223)
356 1ex7_A Guanylate kinase; subst 93.5 0.041 1.4E-06 48.7 3.1 21 48-68 4-24 (186)
357 3zvl_A Bifunctional polynucleo 93.5 0.22 7.5E-06 49.8 8.9 23 45-67 258-280 (416)
358 3fb4_A Adenylate kinase; psych 93.5 0.043 1.5E-06 49.3 3.4 22 46-67 1-22 (216)
359 3cm0_A Adenylate kinase; ATP-b 93.4 0.052 1.8E-06 47.4 3.8 23 45-67 4-26 (186)
360 3tqc_A Pantothenate kinase; bi 93.4 0.054 1.8E-06 52.3 4.2 28 43-70 90-117 (321)
361 1qhx_A CPT, protein (chloramph 93.4 0.051 1.7E-06 47.1 3.6 23 46-68 4-26 (178)
362 3lnc_A Guanylate kinase, GMP k 93.4 0.027 9.3E-07 51.4 1.9 24 46-69 28-52 (231)
363 2rhm_A Putative kinase; P-loop 93.3 0.054 1.9E-06 47.5 3.8 24 45-68 5-28 (193)
364 1nn5_A Similar to deoxythymidy 93.3 0.061 2.1E-06 48.1 4.2 27 45-71 9-35 (215)
365 2pjz_A Hypothetical protein ST 93.3 0.04 1.4E-06 51.7 3.0 23 47-69 32-54 (263)
366 3dl0_A Adenylate kinase; phosp 93.3 0.047 1.6E-06 49.1 3.4 22 46-67 1-22 (216)
367 2zr9_A Protein RECA, recombina 93.3 0.31 1E-05 47.6 9.4 26 46-71 62-87 (349)
368 3trf_A Shikimate kinase, SK; a 93.3 0.053 1.8E-06 47.3 3.6 24 45-68 5-28 (185)
369 1wcv_1 SOJ, segregation protei 93.3 0.24 8.2E-06 45.8 8.3 67 106-174 110-182 (257)
370 1tev_A UMP-CMP kinase; ploop, 93.2 0.053 1.8E-06 47.5 3.6 24 45-68 3-26 (196)
371 2vp4_A Deoxynucleoside kinase; 93.2 0.049 1.7E-06 49.8 3.4 26 43-68 18-43 (230)
372 1odf_A YGR205W, hypothetical 3 93.2 0.068 2.3E-06 50.9 4.5 29 43-71 29-57 (290)
373 2wwf_A Thymidilate kinase, put 93.2 0.071 2.4E-06 47.5 4.4 26 45-70 10-35 (212)
374 1aky_A Adenylate kinase; ATP:A 93.2 0.053 1.8E-06 49.0 3.5 25 44-68 3-27 (220)
375 2bbs_A Cystic fibrosis transme 93.2 0.044 1.5E-06 52.2 3.0 24 46-69 65-88 (290)
376 1y63_A LMAJ004144AAA protein; 93.1 0.063 2.1E-06 47.1 3.8 24 45-68 10-33 (184)
377 2pbr_A DTMP kinase, thymidylat 93.1 0.066 2.3E-06 46.9 4.0 24 47-70 2-25 (195)
378 1u0l_A Probable GTPase ENGC; p 93.1 0.042 1.4E-06 52.6 2.9 23 46-68 170-192 (301)
379 2p5t_B PEZT; postsegregational 93.1 0.034 1.2E-06 51.7 2.2 26 43-68 30-55 (253)
380 2kjq_A DNAA-related protein; s 93.1 0.051 1.7E-06 46.2 3.1 27 45-71 36-62 (149)
381 4he6_A Peptidase family U32; u 93.1 0.13 4.4E-06 39.5 5.1 58 267-328 26-86 (89)
382 1uf9_A TT1252 protein; P-loop, 93.1 0.062 2.1E-06 47.5 3.8 24 45-68 8-31 (203)
383 3tui_C Methionine import ATP-b 93.1 0.046 1.6E-06 53.7 3.1 24 46-69 55-78 (366)
384 2z0h_A DTMP kinase, thymidylat 93.1 0.067 2.3E-06 47.0 4.0 25 47-71 2-26 (197)
385 1gvn_B Zeta; postsegregational 93.1 0.048 1.6E-06 51.8 3.2 26 43-68 31-56 (287)
386 4a74_A DNA repair and recombin 93.1 0.049 1.7E-06 49.2 3.1 23 46-68 26-48 (231)
387 3hr8_A Protein RECA; alpha and 93.1 0.17 6E-06 49.4 7.2 26 46-71 62-87 (356)
388 2pez_A Bifunctional 3'-phospho 93.0 0.077 2.6E-06 46.1 4.2 27 45-71 5-31 (179)
389 3jvv_A Twitching mobility prot 93.0 0.061 2.1E-06 52.8 3.9 28 45-72 123-150 (356)
390 1qf9_A UMP/CMP kinase, protein 93.0 0.074 2.5E-06 46.5 4.1 24 45-68 6-29 (194)
391 2ehv_A Hypothetical protein PH 93.0 0.05 1.7E-06 49.8 3.1 22 46-67 31-52 (251)
392 3nh6_A ATP-binding cassette SU 92.9 0.032 1.1E-06 53.6 1.7 25 45-69 80-104 (306)
393 2v54_A DTMP kinase, thymidylat 92.9 0.064 2.2E-06 47.5 3.6 24 45-68 4-27 (204)
394 1sq5_A Pantothenate kinase; P- 92.9 0.066 2.3E-06 51.3 3.9 27 44-70 79-105 (308)
395 3fvq_A Fe(3+) IONS import ATP- 92.9 0.051 1.8E-06 53.3 3.1 24 46-69 31-54 (359)
396 2c95_A Adenylate kinase 1; tra 92.8 0.067 2.3E-06 47.0 3.5 24 45-68 9-32 (196)
397 3tlx_A Adenylate kinase 2; str 92.8 0.072 2.5E-06 49.1 3.8 25 44-68 28-52 (243)
398 3bos_A Putative DNA replicatio 92.7 0.12 4.1E-06 46.7 5.2 29 44-72 51-79 (242)
399 1z47_A CYSA, putative ABC-tran 92.7 0.057 2E-06 52.9 3.1 25 46-70 42-66 (355)
400 1lw7_A Transcriptional regulat 92.7 0.049 1.7E-06 53.6 2.7 25 45-69 170-194 (365)
401 2pt5_A Shikimate kinase, SK; a 92.6 0.071 2.4E-06 45.6 3.4 22 47-68 2-23 (168)
402 2yyz_A Sugar ABC transporter, 92.6 0.059 2E-06 52.9 3.1 25 46-70 30-54 (359)
403 2cdn_A Adenylate kinase; phosp 92.6 0.083 2.8E-06 46.9 3.9 25 44-68 19-43 (201)
404 4e22_A Cytidylate kinase; P-lo 92.6 0.071 2.4E-06 49.5 3.5 22 45-66 27-48 (252)
405 2gza_A Type IV secretion syste 92.5 0.053 1.8E-06 53.3 2.7 26 45-70 175-200 (361)
406 2it1_A 362AA long hypothetical 92.5 0.061 2.1E-06 52.8 3.1 25 46-70 30-54 (362)
407 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.05 1.7E-06 52.8 2.5 25 46-70 172-196 (330)
408 1e4v_A Adenylate kinase; trans 92.5 0.071 2.4E-06 47.9 3.3 23 46-68 1-23 (214)
409 3rlf_A Maltose/maltodextrin im 92.5 0.062 2.1E-06 53.1 3.1 25 46-70 30-54 (381)
410 1zd8_A GTP:AMP phosphotransfer 92.4 0.074 2.5E-06 48.3 3.4 23 45-67 7-29 (227)
411 1g29_1 MALK, maltose transport 92.4 0.065 2.2E-06 52.9 3.1 24 46-69 30-53 (372)
412 1gtv_A TMK, thymidylate kinase 92.4 0.032 1.1E-06 50.0 0.8 25 47-71 2-26 (214)
413 1v43_A Sugar-binding transport 92.3 0.066 2.3E-06 52.8 3.1 25 46-70 38-62 (372)
414 2ewv_A Twitching motility prot 92.3 0.094 3.2E-06 51.7 4.2 29 44-72 135-163 (372)
415 3iij_A Coilin-interacting nucl 92.2 0.075 2.6E-06 46.2 3.1 24 45-68 11-34 (180)
416 1via_A Shikimate kinase; struc 92.2 0.071 2.4E-06 46.2 2.8 22 47-68 6-27 (175)
417 3sr0_A Adenylate kinase; phosp 92.1 0.086 3E-06 47.4 3.4 23 46-68 1-23 (206)
418 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.11 3.8E-06 48.4 4.2 29 45-73 4-32 (260)
419 3io3_A DEHA2D07832P; chaperone 92.0 4 0.00014 39.6 15.4 41 133-173 232-272 (348)
420 4fcw_A Chaperone protein CLPB; 91.9 0.24 8.3E-06 46.9 6.6 29 42-70 44-72 (311)
421 1vht_A Dephospho-COA kinase; s 91.9 0.11 3.8E-06 46.7 3.8 23 45-67 4-26 (218)
422 2grj_A Dephospho-COA kinase; T 91.9 0.11 3.7E-06 46.2 3.7 25 44-68 11-35 (192)
423 1xp8_A RECA protein, recombina 91.9 0.96 3.3E-05 44.3 10.9 25 46-70 75-99 (366)
424 2bwj_A Adenylate kinase 5; pho 91.8 0.098 3.3E-06 46.0 3.3 24 45-68 12-35 (199)
425 3io5_A Recombination and repai 91.8 1.4 4.7E-05 42.3 11.4 25 47-71 30-54 (333)
426 3iqw_A Tail-anchored protein t 91.7 1.8 6E-05 41.8 12.5 40 133-172 223-262 (334)
427 3d31_A Sulfate/molybdate ABC t 91.7 0.056 1.9E-06 52.8 1.8 24 46-69 27-50 (348)
428 1uj2_A Uridine-cytidine kinase 91.7 0.11 3.8E-06 48.1 3.7 25 44-68 21-45 (252)
429 2vli_A Antibiotic resistance p 91.7 0.076 2.6E-06 46.1 2.4 24 45-68 5-28 (183)
430 2oap_1 GSPE-2, type II secreti 91.7 0.077 2.6E-06 54.7 2.8 24 46-69 261-284 (511)
431 3be4_A Adenylate kinase; malar 91.6 0.11 3.6E-06 46.9 3.4 24 45-68 5-28 (217)
432 2xb4_A Adenylate kinase; ATP-b 91.6 0.11 3.6E-06 47.2 3.4 22 47-68 2-23 (223)
433 3kta_A Chromosome segregation 91.6 0.095 3.3E-06 45.6 3.0 23 47-69 28-50 (182)
434 1zak_A Adenylate kinase; ATP:A 91.6 0.094 3.2E-06 47.4 3.0 23 46-68 6-28 (222)
435 1zuh_A Shikimate kinase; alpha 91.5 0.11 3.9E-06 44.5 3.4 23 46-68 8-30 (168)
436 3of5_A Dethiobiotin synthetase 91.5 0.61 2.1E-05 42.4 8.5 67 106-174 109-182 (228)
437 2w0m_A SSO2452; RECA, SSPF, un 91.5 0.12 4E-06 46.6 3.6 26 46-71 24-49 (235)
438 1m7g_A Adenylylsulfate kinase; 91.5 0.15 5.1E-06 45.6 4.3 26 45-70 25-50 (211)
439 4eaq_A DTMP kinase, thymidylat 91.5 0.15 5.3E-06 46.5 4.4 28 44-71 25-52 (229)
440 1u94_A RECA protein, recombina 91.4 0.6 2.1E-05 45.6 8.8 26 46-71 64-89 (356)
441 4a1f_A DNAB helicase, replicat 91.4 1 3.6E-05 43.5 10.4 26 46-71 47-72 (338)
442 1p9r_A General secretion pathw 91.3 0.13 4.5E-06 51.5 4.0 27 44-70 166-192 (418)
443 1e6c_A Shikimate kinase; phosp 91.2 0.11 3.6E-06 44.7 2.8 23 46-68 3-25 (173)
444 1oxx_K GLCV, glucose, ABC tran 91.2 0.056 1.9E-06 53.0 1.1 24 46-69 32-55 (353)
445 2chg_A Replication factor C sm 91.1 0.79 2.7E-05 40.3 8.7 23 47-69 40-62 (226)
446 2iyv_A Shikimate kinase, SK; t 91.0 0.1 3.5E-06 45.5 2.6 23 46-68 3-25 (184)
447 2ze6_A Isopentenyl transferase 91.0 0.14 4.7E-06 47.6 3.5 22 47-68 3-24 (253)
448 3r20_A Cytidylate kinase; stru 90.9 0.15 5E-06 46.9 3.6 24 45-68 9-32 (233)
449 2npi_A Protein CLP1; CLP1-PCF1 90.8 0.12 4E-06 52.6 3.1 26 45-70 138-163 (460)
450 3fkq_A NTRC-like two-domain pr 90.8 0.27 9.1E-06 48.4 5.6 32 42-73 140-172 (373)
451 1f2t_A RAD50 ABC-ATPase; DNA d 90.7 0.14 4.9E-06 43.3 3.1 23 47-69 25-47 (149)
452 1ak2_A Adenylate kinase isoenz 90.6 0.16 5.5E-06 46.3 3.6 24 45-68 16-39 (233)
453 1yqt_A RNAse L inhibitor; ATP- 90.5 0.14 4.6E-06 53.2 3.3 25 45-69 47-71 (538)
454 3nwj_A ATSK2; P loop, shikimat 90.5 0.13 4.4E-06 47.7 2.9 24 45-68 48-71 (250)
455 2obl_A ESCN; ATPase, hydrolase 90.5 0.15 5E-06 49.9 3.4 24 45-68 71-94 (347)
456 3euj_A Chromosome partition pr 90.4 0.14 4.8E-06 52.2 3.3 25 46-70 30-54 (483)
457 3pfi_A Holliday junction ATP-d 90.4 1.4 4.7E-05 42.2 10.3 25 44-68 54-78 (338)
458 3umf_A Adenylate kinase; rossm 90.4 0.22 7.4E-06 45.2 4.2 24 45-68 29-52 (217)
459 2f6r_A COA synthase, bifunctio 90.3 0.2 6.8E-06 47.3 4.1 23 44-66 74-96 (281)
460 1cr0_A DNA primase/helicase; R 90.3 0.18 6E-06 47.8 3.7 27 46-72 36-62 (296)
461 2x8a_A Nuclear valosin-contain 90.1 0.16 5.4E-06 47.8 3.2 22 47-68 46-67 (274)
462 3ozx_A RNAse L inhibitor; ATP 90.0 0.13 4.5E-06 53.3 2.8 26 44-69 24-49 (538)
463 1q3t_A Cytidylate kinase; nucl 89.8 0.21 7.1E-06 45.6 3.6 25 43-67 14-38 (236)
464 3qf7_A RAD50; ABC-ATPase, ATPa 89.8 0.16 5.6E-06 49.9 3.1 23 48-70 26-48 (365)
465 2axn_A 6-phosphofructo-2-kinas 89.6 1.3 4.3E-05 45.7 9.8 25 45-69 35-59 (520)
466 3bh0_A DNAB-like replicative h 89.6 1.7 5.8E-05 41.5 10.1 25 46-70 69-93 (315)
467 1ixz_A ATP-dependent metallopr 89.6 0.18 6.3E-06 46.4 3.1 22 47-68 51-72 (254)
468 3j16_B RLI1P; ribosome recycli 89.5 0.18 6.2E-06 53.0 3.3 25 45-69 103-127 (608)
469 3gmt_A Adenylate kinase; ssgci 89.5 0.21 7.3E-06 45.6 3.4 25 44-68 7-31 (230)
470 3b60_A Lipid A export ATP-bind 89.5 0.16 5.5E-06 53.2 3.0 25 45-69 369-393 (582)
471 3b5x_A Lipid A export ATP-bind 89.5 0.17 6E-06 53.0 3.2 26 45-70 369-394 (582)
472 2vhj_A Ntpase P4, P4; non- hyd 89.3 0.54 1.8E-05 45.2 6.1 22 47-68 125-146 (331)
473 1svm_A Large T antigen; AAA+ f 89.2 0.23 7.9E-06 49.0 3.6 25 44-68 168-192 (377)
474 1yqt_A RNAse L inhibitor; ATP- 89.2 0.2 6.8E-06 52.0 3.3 24 46-69 313-336 (538)
475 2dpy_A FLII, flagellum-specifi 89.2 0.21 7.1E-06 50.4 3.4 24 45-68 157-180 (438)
476 4edh_A DTMP kinase, thymidylat 89.2 0.3 1E-05 44.1 4.1 30 44-73 5-34 (213)
477 3ake_A Cytidylate kinase; CMP 89.1 0.24 8.1E-06 43.8 3.4 22 47-68 4-25 (208)
478 1d2n_A N-ethylmaleimide-sensit 89.0 0.87 3E-05 42.2 7.4 27 42-68 61-87 (272)
479 3bk7_A ABC transporter ATP-bin 89.0 0.19 6.4E-06 52.9 3.0 25 45-69 117-141 (607)
480 1in4_A RUVB, holliday junction 88.9 0.22 7.7E-06 48.1 3.3 24 46-69 52-75 (334)
481 3b9p_A CG5977-PA, isoform A; A 88.9 0.94 3.2E-05 42.5 7.6 25 44-68 53-77 (297)
482 3ozx_A RNAse L inhibitor; ATP 88.8 0.2 6.9E-06 51.9 3.0 23 47-69 296-318 (538)
483 2v1u_A Cell division control p 88.7 1.5 5E-05 42.5 9.2 26 44-69 43-68 (387)
484 2yl4_A ATP-binding cassette SU 88.7 0.16 5.6E-06 53.3 2.3 25 45-69 370-394 (595)
485 1a7j_A Phosphoribulokinase; tr 88.6 0.16 5.4E-06 48.3 1.9 25 45-69 5-29 (290)
486 3bk7_A ABC transporter ATP-bin 88.6 0.23 7.8E-06 52.3 3.3 24 46-69 383-406 (607)
487 3h4m_A Proteasome-activating n 88.6 0.83 2.8E-05 42.6 7.0 25 44-68 50-74 (285)
488 2w58_A DNAI, primosome compone 88.6 0.31 1.1E-05 43.0 3.8 25 46-70 55-79 (202)
489 1iy2_A ATP-dependent metallopr 88.6 0.24 8.1E-06 46.4 3.1 22 47-68 75-96 (278)
490 3qf4_B Uncharacterized ABC tra 88.5 0.18 6.2E-06 53.0 2.5 25 45-69 381-405 (598)
491 1xwi_A SKD1 protein; VPS4B, AA 88.5 0.99 3.4E-05 43.3 7.6 26 43-68 43-68 (322)
492 1jbk_A CLPB protein; beta barr 88.5 0.36 1.2E-05 41.5 4.1 27 45-71 43-69 (195)
493 2cvh_A DNA repair and recombin 88.5 0.25 8.7E-06 44.0 3.2 22 46-67 21-42 (220)
494 1ltq_A Polynucleotide kinase; 88.4 0.28 9.5E-06 46.4 3.5 22 46-67 3-24 (301)
495 1p5z_B DCK, deoxycytidine kina 88.4 0.18 6.3E-06 46.8 2.2 25 44-68 23-47 (263)
496 1n0w_A DNA repair protein RAD5 88.4 0.25 8.7E-06 44.8 3.1 23 46-68 25-47 (243)
497 3lv8_A DTMP kinase, thymidylat 88.4 0.36 1.2E-05 44.3 4.1 30 44-73 26-55 (236)
498 2orw_A Thymidine kinase; TMTK, 88.3 1.4 4.9E-05 38.4 7.9 27 47-73 5-31 (184)
499 4a82_A Cystic fibrosis transme 88.0 0.15 5.2E-06 53.3 1.5 25 45-69 367-391 (578)
500 3j16_B RLI1P; ribosome recycli 88.0 0.27 9.2E-06 51.7 3.3 24 47-70 380-403 (608)
No 1
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5.1e-68 Score=539.89 Aligned_cols=386 Identities=53% Similarity=0.910 Sum_probs=350.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++.+||+++||+|+|||||+++|++...+.|...+..++.+|..++|+++|+|++.....+++.++.++|+|||||++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 46789999999999999999999987666665544444457888999999999999998898888999999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCCCCCCCc
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTP 201 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~~~~~~p 201 (463)
.+|..+++.+|++|+|||+++|.++||++|+.++..+++|++++|+||||+. +++.++.+.++++++++.+++.+..+|
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 9999999999999999999999999999999999999999888999999998 466677788899999999988766799
Q ss_pred EEEccchhhccCC-CCCCCCcc-HHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEE
Q psy3124 202 FVFGSALLALQGD-SSELGEPS-IHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAEL 279 (463)
Q Consensus 202 vi~~Sa~~~~~~~-~~~~~~~~-i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i 279 (463)
++++||+++.+.. ++|+ .+ +.+|+++|.+.+|.|.++.++||+++|+++|.++++|+|++|+|.+|+|++||.|.+
T Consensus 161 ~i~~SA~~g~n~~~~~~~--~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~ 238 (397)
T 1d2e_A 161 IIVGSALCALEQRDPELG--LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEF 238 (397)
T ss_dssp EEECCHHHHHTTCCTTTT--HHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred EEEeehhhcccccCCCcc--CCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEE
Confidence 9999999987643 4676 45 899999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCccccC
Q psy3124 280 LGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITS 359 (463)
Q Consensus 280 ~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~ 359 (463)
+|.+...+++|++|++++.++++|.|||+|++.|++++..++++||+|+++++++++++|+|++.||+++++++++|+..
T Consensus 239 ~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~ 318 (397)
T 1d2e_A 239 LGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVS 318 (397)
T ss_dssp EETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBCT
T ss_pred eCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccCC
Confidence 88754567899999999999999999999999999999999999999999988888999999999999877777789999
Q ss_pred CcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeeccCC
Q psy3124 360 KYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLGNM 431 (463)
Q Consensus 360 g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~~~~ 431 (463)
||.+++|+++.+++|++.+.++ ++++++||.+.|+|+|.+|+|+++|+||+||++++|+|+|+|+++.+..
T Consensus 319 g~~~~~~~~t~~~~~~i~l~~~-~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~~~~ti~~G~i~~~~~~~ 389 (397)
T 1d2e_A 319 HFMPVMFSLTWDMACRIILPPG-KELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMT 389 (397)
T ss_dssp TCCCEEEETTEEEEEEEECCSS-CCCBCTTCEEEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEECCCCC
T ss_pred CCEEEEEEecCEEEEEEEEcCC-cccccCCCEEEEEEEECCeEEEccCCeEEEEeCCeEEEEEEEeecccCc
Confidence 9999999999999999986543 4789999999999999999999999999999999999999999988643
No 2
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.1e-67 Score=539.10 Aligned_cols=390 Identities=49% Similarity=0.839 Sum_probs=347.5
Q ss_pred ccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCc-cccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeC
Q psy3124 37 ASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGK-SKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDC 115 (463)
Q Consensus 37 ~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~-~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDt 115 (463)
+.+..+++.++|+++||+|+|||||+++|++...+.|. ..+..++.+|..++|+++|+|++.....+++.++.++|+||
T Consensus 3 ~~~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDt 82 (405)
T 2c78_A 3 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDC 82 (405)
T ss_dssp ------CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEEC
T ss_pred ccccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEEC
Confidence 34566778899999999999999999999987666654 23333346899999999999999988889988899999999
Q ss_pred CChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcC
Q psy3124 116 PGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 116 PGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g 194 (463)
|||++|..+|..+++.+|++|+|+|++++.+.|+++|+..+..+++|++++|+||||+. +++.++.+.++++++++.++
T Consensus 83 pG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 83 PGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp CCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999888999999998 56667777888999999988
Q ss_pred CCCCCCcEEEccchhhcc----------CCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEE
Q psy3124 195 YDGDNTPFVFGSALLALQ----------GDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIG 264 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~----------~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G 264 (463)
+.+..+|++++||+++.+ +..+|| .++.+|+++|..++|.|.++.+.|++++|+++|.++++|+|++|
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~--~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g 240 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWV--DKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHH--HHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEE
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCccc--ccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEE
Confidence 866678999999999954 344565 45899999999999999888899999999999999999999999
Q ss_pred EEecccccCCCEEEEecCCc-eeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEE
Q psy3124 265 TIKQGTIKRNDEAELLGFNS-KFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343 (463)
Q Consensus 265 ~v~~G~l~~gd~v~i~~~~~-~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v 343 (463)
+|.+|+|++||.|.++|.+. ...++|++|++++.++++|.|||+|++.|++++..++++||+|++++++++++.|+|++
T Consensus 241 ~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v 320 (405)
T 2c78_A 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASV 320 (405)
T ss_dssp ECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEE
T ss_pred EEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEE
Confidence 99999999999999998753 25689999999999999999999999999999999999999999998888899999999
Q ss_pred EEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEE
Q psy3124 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGI 423 (463)
Q Consensus 344 ~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~ 423 (463)
.||++++++..+||..||++++|+++.+++|++.+.++ ++.+++||.+.|+|+|.+|+|+++|+||+||++++|+|+|+
T Consensus 321 ~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~-~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~~~~ti~~G~ 399 (405)
T 2c78_A 321 YVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGV 399 (405)
T ss_dssp EECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCTT-CCCBCTTCEEEEEEEEEEEEEECTTCEEEEEETTEEEEEEE
T ss_pred EEecccCCCccccccCCceEEEEEcccEEEEEEEEccC-ccccCCCCEEEEEEEECceEEEccCCEEEEEcCCeEEEEEE
Confidence 99998776667899999999999999999999996543 47899999999999999999999999999999999999999
Q ss_pred Eeeecc
Q psy3124 424 VTKVLG 429 (463)
Q Consensus 424 V~~~~~ 429 (463)
|+++++
T Consensus 400 i~~~~~ 405 (405)
T 2c78_A 400 VTKILE 405 (405)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 998753
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.1e-65 Score=524.95 Aligned_cols=376 Identities=24% Similarity=0.384 Sum_probs=333.6
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhh---------------hHhcCccccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKV---------------AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~---------------~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
.+.++++||+++||+|+|||||+++|+.. ..+.|..++...+.+|..++|+++|+|++.....++
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34577899999999999999999999533 123466667778899999999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCccc--
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLVD-- 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~~~-- 175 (463)
++++.++|+|||||++|.++|..+++.+|++||||||++|.+ +||++|+.++..+++|++|+|+||||+.+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 999999999999999999999999999999999999999986 79999999999999999999999999963
Q ss_pred --HHHHHHHHHHHHHHHHHcCCCCC-CCcEEEccchhhccCC-----CCCCCCccHHHHHHHhhhcCCCCCCCCCCCcee
Q psy3124 176 --REIMELVELEVRDVLTAYGYDGD-NTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVRDITSPFIL 247 (463)
Q Consensus 176 --~~~~~~i~~~i~~~l~~~g~~~~-~~pvi~~Sa~~~~~~~-----~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~ 247 (463)
+..++++.+++.++++.+++.+. .+|++++||++|.+.. .+||.+. .|++.|.. +|+|.++.+.|++|
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~---~L~~~l~~-i~~~~~~~~~p~r~ 247 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGL---PFIPYLDN-LPNFNRSVDGPIRL 247 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCch---HHHHHHHh-CCCCccCCCCCeEE
Confidence 55678888899999999988653 5899999999996543 3787543 46666666 78888888999999
Q ss_pred eeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEE
Q psy3124 248 PIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 248 ~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
+|+++|+ +.|+++.|+|.+|+|++||.|.++|.+ .+++|++|++++.++++|.|||+|+++|+|++..++++||+|
T Consensus 248 ~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 248 PIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNK--HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred EEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCC--ceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 9999986 789999999999999999999999976 568999999999999999999999999999999999999999
Q ss_pred ecCCCc-cccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC------------CCCCccccCCCEEEE
Q psy3124 328 AKADTL-QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP------------GEDDGMLMPGEHGTV 394 (463)
Q Consensus 328 ~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~~l~~g~~~~v 394 (463)
++++.+ +.++.|+|+|.||+|+ .+|..||++.+|+|+.+++|++... ...+++|+.||.+.|
T Consensus 324 ~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v 398 (439)
T 3j2k_7 324 CDPSNLCHSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIA 398 (439)
T ss_pred cCCCCCCceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEE
Confidence 998864 6789999999999974 5799999999999999999998721 123468999999999
Q ss_pred EEEeceEEeeccC------CeEEEEeCCceEEEEEEeeec
Q psy3124 395 TMTLLYKMYLSKG------QTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 395 ~~~~~~p~~~~~~------~rfilr~~~~tig~G~V~~~~ 428 (463)
+|++.+|+|++++ +||+|||+|+|+|+|+|++++
T Consensus 399 ~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 399 RLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 9999999999986 799999999999999999986
No 4
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=3.9e-65 Score=557.70 Aligned_cols=393 Identities=51% Similarity=0.845 Sum_probs=338.4
Q ss_pred ccccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCC
Q psy3124 37 ASSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCP 116 (463)
Q Consensus 37 ~~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtP 116 (463)
..+...++.++|+++||+|+|||||+++|++...+.|...+..++.+|..++|+++|+|++.....++..++.++|+|||
T Consensus 288 ~~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP 367 (1289)
T 3avx_A 288 EKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP 367 (1289)
T ss_dssp --CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECC
T ss_pred hhhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC
Confidence 34556678899999999999999999999987666665444444468889999999999999988999889999999999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHHHHHHHHcCC
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV-DREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i~~~l~~~g~ 195 (463)
||++|..+|..+++.+|++|||||+++|.++||++|+.++..+++|++|||+||||+. +++.++.+.+++.++++.+++
T Consensus 368 GHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 368 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp CHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999888999999998 456677788899999999988
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRND 275 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd 275 (463)
.+..+|++++||+++.++..+|+ .++.+|+++|...+|.|.++.+.|++++|+++|.++++|+|++|+|.+|+|++||
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~--eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD 525 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWE--AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGE 525 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHH--HHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTC
T ss_pred cccceeEEEEEeccCCCCCcccc--ccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCC
Confidence 76679999999999866555676 6899999999998999988889999999999999999999999999999999999
Q ss_pred EEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCc
Q psy3124 276 EAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYK 355 (463)
Q Consensus 276 ~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~ 355 (463)
.|.++|.+...+++|++|++++.++++|.|||+|++.|++++..++++||+|++++++++++.|+|++.||++++++.++
T Consensus 526 ~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~~~ 605 (1289)
T 3avx_A 526 EVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHT 605 (1289)
T ss_dssp EEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSCSS
T ss_pred EEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccccc
Confidence 99999876446689999999999999999999999999999999999999999998888899999999999987666677
Q ss_pred cccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCCeEEEEeCCceEEEEEEeeeccCCC
Q psy3124 356 PITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLGNME 432 (463)
Q Consensus 356 ~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tig~G~V~~~~~~~~ 432 (463)
|+..||.+++|+++.+++|++.+.++ ++.+++||.+.|+|+|.+|+|+++|+||+||++++|+|+|+|+++.+...
T Consensus 606 pi~~G~~p~l~igT~~vtg~I~L~~~-~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd~grTIG~G~V~~v~~~~~ 681 (1289)
T 3avx_A 606 PFFKGYRPQFYFRTTDVTGTIELPEG-VEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLSGAS 681 (1289)
T ss_dssp CBCTTCCCEEECSSCEEEEEEECCTT-CCCBCTTCCCEEEEEEEEEEECCTTCEEEEEETTEEEEEEEEEEECCCCC
T ss_pred cccCCCceEEEEeeeeEEEEEEECCC-cccccCCCEEEEEEEECceEEEccCCEEEEEeCCeEEEEEEEeeechhhh
Confidence 99999999999999999999986544 47899999999999999999999999999999999999999999987554
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.4e-65 Score=528.56 Aligned_cols=381 Identities=30% Similarity=0.440 Sum_probs=336.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEecC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 106 (463)
+++.++|+++||+|+|||||+++|++.. .+.|++.+...+.+|..++|+++|+|++..+..+++.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 4678999999999999999999997541 2345555555567888999999999999999999999
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcH-------HHHHHHHHHHHcCCCeEEEEEeccCcc--cHH
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-------QTREHLLLSKQIGIDNVVVYVNKADLV--DRE 177 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~-------qt~e~l~~~~~l~ip~iivvvNKiD~~--~~~ 177 (463)
++.++|+|||||++|.++|..+++.+|++||||||++|.++ ||++|+.++..+++|++|+|+||||+. +++
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 99999999999999999999999999999999999998766 999999999999999899999999998 467
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCC-----CCCCCCcc---------HHHHHHHhhhcCCCCCCCCCC
Q psy3124 178 IMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGD-----SSELGEPS---------IHRLLDALDKHIPNPVRDITS 243 (463)
Q Consensus 178 ~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~-----~~~~~~~~---------i~~Ll~~L~~~l~~p~~~~~~ 243 (463)
.++.+.++++++++.+++..+.+|++++||+++.+.. .+||.... ...|+++|.. +++|.+..+.
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~~ 242 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCCC
Confidence 7888889999999998886556899999999986532 37875210 2457888776 7788888899
Q ss_pred CceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCccc
Q psy3124 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIER 323 (463)
Q Consensus 244 p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 323 (463)
|++|+|+++|++++.|+|++|+|++|.+++||+|.++|.+ ..++|++|+.++.++++|.|||+|++.|++++..++++
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~r 320 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG--VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRR 320 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT--EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCT
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC--ceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCc
Confidence 9999999999999999999999999999999999999976 56899999999999999999999999999998899999
Q ss_pred ceEEecCC--CccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC------------CCCccccCC
Q psy3124 324 GMLLAKAD--TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG------------EDDGMLMPG 389 (463)
Q Consensus 324 G~vl~~~~--~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~------------~~~~~l~~g 389 (463)
||+|++++ ++..+++|+|++.||+++ ++|..||++++|+|+.+++|+|..+. ..+++|++|
T Consensus 321 G~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g 395 (458)
T 1f60_A 321 GNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSG 395 (458)
T ss_dssp TCEEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTT
T ss_pred eeEEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCC
Confidence 99999986 467899999999999864 68999999999999999999987421 125689999
Q ss_pred CEEEEEEEeceEEeeccCC------eEEEEeCCceEEEEEEeeeccC
Q psy3124 390 EHGTVTMTLLYKMYLSKGQ------TFTIRENNKLVATGIVTKVLGN 430 (463)
Q Consensus 390 ~~~~v~~~~~~p~~~~~~~------rfilr~~~~tig~G~V~~~~~~ 430 (463)
|.+.|+|+|.+|+|+++++ ||+|||+|+|+|+|+|+++.+.
T Consensus 396 ~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 396 DAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp CEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred CEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 9999999999999999987 9999999999999999999875
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.2e-63 Score=513.48 Aligned_cols=378 Identities=29% Similarity=0.476 Sum_probs=323.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEecC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 106 (463)
+++.++|+++||+|+|||||+++|+... .+.|++.+...+.+|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 4578999999999999999999997541 2335555545567899999999999999998899999
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeccCccc----
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-------QMPQTREHLLLSKQIGIDNVVVYVNKADLVD---- 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-------~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~---- 175 (463)
++.++|+|||||++|..+|..+++.+|++|+|+||++| +..|+++|+.++..+++|++|+|+||||+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999998 7779999999999999988999999999986
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCC-----CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeE
Q psy3124 176 REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPID 250 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~-----~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~ 250 (463)
++.++.+.++++++++.+++....+|++++||+++.+.. .+||.+ ..|+++|.. +++|.++.+.|++++|+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g---~~Ll~~l~~-~~~p~~~~~~~~~~~v~ 238 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG---PTLEEYLDQ-LELPPKPVDKPLRIPIQ 238 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCS---CCHHHHHTT-CCCCCCGGGSCCBEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccc---hhHHHHHhc-cCCCCCCCCCCeEEEEE
Confidence 567788889999999999887667899999999985432 367755 367888777 66677777899999999
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecC
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKA 330 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 330 (463)
++|++++.|++++|+|.+|+|++||.|.++|.+ ..++|++|+.++.++++|.|||+|+++|+|++..++++||+|+++
T Consensus 239 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~ 316 (435)
T 1jny_A 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG--KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHP 316 (435)
T ss_dssp EEEEETTTEEEEEEECCBSCEETTCEEEEETTT--EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECT
T ss_pred EEEEeCCCcEEEEEEEecCeEEcCCEEEECCce--eEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCC
Confidence 999999999999999999999999999999876 568999999999999999999999999999999999999999998
Q ss_pred C-CccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC----C--------CCCccccCCCEEEEEEE
Q psy3124 331 D-TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP----G--------EDDGMLMPGEHGTVTMT 397 (463)
Q Consensus 331 ~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----~--------~~~~~l~~g~~~~v~~~ 397 (463)
+ ++..+..|+|++.||+++ +||..||++++|+|+.+++|+|... + ..+..|++||.+.|+|+
T Consensus 317 ~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~ 391 (435)
T 1jny_A 317 NNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFK 391 (435)
T ss_dssp TSCCCEESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEE
T ss_pred CCCceEeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEE
Confidence 7 567899999999999863 6899999999999999999998742 1 12468999999999999
Q ss_pred eceEEeeccCC------eEEEEeCCceEEEEEEeeeccC
Q psy3124 398 LLYKMYLSKGQ------TFTIRENNKLVATGIVTKVLGN 430 (463)
Q Consensus 398 ~~~p~~~~~~~------rfilr~~~~tig~G~V~~~~~~ 430 (463)
|.+|+|+++++ ||+|||+|+|+|+|+|+++.+.
T Consensus 392 ~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 392 PIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp ESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred ECceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 99999999987 9999999999999999998763
No 7
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=8.9e-63 Score=513.41 Aligned_cols=382 Identities=25% Similarity=0.349 Sum_probs=321.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEecC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 106 (463)
.++.+||+++|++|+|||||+++|++.. ...|...+...+.+|...+|+++|+|++.....+++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 5678999999999999999999997541 1335556666788999999999999999999999999
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeccCccc--HH
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-------QMPQTREHLLLSKQIGIDNVVVYVNKADLVD--RE 177 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-------~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~~ 177 (463)
++.++|+|||||++|..++..+++.+|++|||||+++| ...|+++|+.++..++++++|+|+||||+.+ +.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 99999999999999999999999999999999999998 5689999999999999988999999999985 67
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCC--------CCCCCCccHHHHHHHhhhcCCC--CCCCCCCCcee
Q psy3124 178 IMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGD--------SSELGEPSIHRLLDALDKHIPN--PVRDITSPFIL 247 (463)
Q Consensus 178 ~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~--------~~~~~~~~i~~Ll~~L~~~l~~--p~~~~~~p~~~ 247 (463)
.++++.+++.++++.+++....+|++++||+++.+.. .+||.++.+.++++.+...+|. |.++.+.|++|
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 7888899999999999987667899999999996654 4699888888888888665654 66778999999
Q ss_pred eeEEEEecC---CCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeecc--------ccceEEccCCeEEEEeccc
Q psy3124 248 PIDNAIGVP---GRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ--------KKVSEARAGDNVGVLLRNV 316 (463)
Q Consensus 248 ~I~~~~~~~---~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~--------~~v~~a~aG~~v~l~l~~~ 316 (463)
+|+++|+++ +.|+|++|+|.+|+|++||.|.++|.+ .+++|++|++++ .++++|.|||+|+++|+++
T Consensus 270 ~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~ 347 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 347 (483)
T ss_dssp EEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT--EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESC
T ss_pred EEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC--CeEEEEEEEEcCccccccccccccEECCCCEEEEEEEec
Confidence 999999988 589999999999999999999999977 458999999995 8999999999999999999
Q ss_pred cccCcccceEEecCCC--ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC-----------CCCC
Q psy3124 317 KLKQIERGMLLAKADT--LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP-----------GEDD 383 (463)
Q Consensus 317 ~~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~ 383 (463)
+..++++||+|++++. +.+++.|+|+|.||+++ +||..||++++|+|+.+++|+|..+ ..++
T Consensus 348 ~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~ 422 (483)
T 3p26_A 348 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKI 422 (483)
T ss_dssp CGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCC
T ss_pred ccccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCc
Confidence 8999999999999876 57899999999999864 6899999999999999999998732 1335
Q ss_pred ccccCCCEEEEEEEe---ceEEeeccC------CeEEEEeCCceEEEEEEeeeccC
Q psy3124 384 GMLMPGEHGTVTMTL---LYKMYLSKG------QTFTIRENNKLVATGIVTKVLGN 430 (463)
Q Consensus 384 ~~l~~g~~~~v~~~~---~~p~~~~~~------~rfilr~~~~tig~G~V~~~~~~ 430 (463)
++|++||.+.|+|++ .+|+|++.+ +||+||++|+|+|+|+|+++...
T Consensus 423 ~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~~ 478 (483)
T 3p26_A 423 RHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQH 478 (483)
T ss_dssp SCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC-
T ss_pred cCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEeccc
Confidence 689999999999999 789999964 89999999999999999987653
No 8
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-62 Score=518.01 Aligned_cols=381 Identities=25% Similarity=0.352 Sum_probs=337.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEec
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 105 (463)
..++.++|+++||+|+|||||+++|++.. ...|.+++...+.+|....|+.+|+|++.....+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 35678999999999999999999997431 123556666677889999999999999999999999
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeccCccc--H
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-------QMPQTREHLLLSKQIGIDNVVVYVNKADLVD--R 176 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g-------~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~ 176 (463)
.++.++|+|||||++|..++..+++.+|++|+||||++| ..+|+++|+.++..+++|++|||+||||+.+ +
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 999999999999999999999999999999999999987 4689999999999999999999999999985 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCC--------CCCCCCccHHHHHHHhhhcCCC--CCCCCCCCce
Q psy3124 177 EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGD--------SSELGEPSIHRLLDALDKHIPN--PVRDITSPFI 246 (463)
Q Consensus 177 ~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~--------~~~~~~~~i~~Ll~~L~~~l~~--p~~~~~~p~~ 246 (463)
..++++.+++..+++.+|+....+|++++||++|.+.. .+||.++.+.++++.+...+|. |.+..+.|++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 77888889999999999987667899999999986543 5799988888887777655554 5667889999
Q ss_pred eeeEEEEecC---CCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeecc--------ccceEEccCCeEEEEecc
Q psy3124 247 LPIDNAIGVP---GRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQ--------KKVSEARAGDNVGVLLRN 315 (463)
Q Consensus 247 ~~I~~~~~~~---~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~--------~~v~~a~aG~~v~l~l~~ 315 (463)
|+|+++|+++ +.|+|++|+|.+|+|++||.|.++|.+ .+++|++|++++ .++++|.|||+|+++|++
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~--~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~ 480 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 480 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT--EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESS
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC--ceEEEEEEEEcccccccccccccceecCCCcceEEeee
Confidence 9999999998 589999999999999999999999977 458999999994 899999999999999999
Q ss_pred ccccCcccceEEecCCC--ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC-----------CCC
Q psy3124 316 VKLKQIERGMLLAKADT--LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP-----------GED 382 (463)
Q Consensus 316 ~~~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~ 382 (463)
++..++++||+|++++. +.+++.|+|+|.||+++ +||..||++++|+|+.+++|+|..+ ..+
T Consensus 481 ~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~ 555 (611)
T 3izq_1 481 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKK 555 (611)
T ss_dssp CCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTC
T ss_pred ccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccC
Confidence 99999999999999876 67899999999999864 6899999999999999999998732 123
Q ss_pred CccccCCCEEEEEEEe---ceEEeeccC------CeEEEEeCCceEEEEEEeeec
Q psy3124 383 DGMLMPGEHGTVTMTL---LYKMYLSKG------QTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 383 ~~~l~~g~~~~v~~~~---~~p~~~~~~------~rfilr~~~~tig~G~V~~~~ 428 (463)
+++|++||.|.|+|++ .+|+|++.+ +||+||++|+|+|+|+|+++.
T Consensus 556 ~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 556 IRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp SCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred ccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 4689999999999999 789999985 799999999999999999875
No 9
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.6e-62 Score=508.53 Aligned_cols=374 Identities=28% Similarity=0.416 Sum_probs=293.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEecC
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 106 (463)
.++.++|+++||+|+|||||+++|+... .+.|+.++...+.+|..++|+++|+|++..+..++++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 4678999999999999999999996421 1224444445567899999999999999998889999
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeccCccc----
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLVD---- 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~-------~qt~e~l~~~~~l~ip~iivvvNKiD~~~---- 175 (463)
++.++|+|||||++|.++|..+++.+|++||||||++|.+ +||++|+.++..+++|++|||+||||+.+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 9999999999999999999999999999999999999874 69999999999999998999999999953
Q ss_pred HHHHHHHHHHHHHHHHHc-CCC-CCCCcEEEccchhhccC-------CCCCCCCccHHHHHHHhhhcCCCCCCCCCCCce
Q psy3124 176 REIMELVELEVRDVLTAY-GYD-GDNTPFVFGSALLALQG-------DSSELGEPSIHRLLDALDKHIPNPVRDITSPFI 246 (463)
Q Consensus 176 ~~~~~~i~~~i~~~l~~~-g~~-~~~~pvi~~Sa~~~~~~-------~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~ 246 (463)
+++++.+.+++.++++.+ ++. ...+|++++||+++.+. ..+||.+.. |++.|.. +|.|.++.+.||+
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~---L~~~l~~-i~~~~~~~~~p~~ 275 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPS---LLEYLDS-MTHLERKVNAPFI 275 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCC---HHHHHHH-CCCCHHHHTSCCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchh---HHHHHHh-CCCCcCCCCCCcE
Confidence 567888888999999887 775 23589999999998653 347987665 5566665 7888777889999
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec-cccceEEccCCeEEEEeccccccCcccce
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF-QKKVSEARAGDNVGVLLRNVKLKQIERGM 325 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 325 (463)
++|+++|+ +.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.+ +.++++|.|||+|+++|+| +..++++||
T Consensus 276 ~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~ 350 (467)
T 1r5b_A 276 MPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPIN--QTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGY 350 (467)
T ss_dssp EECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTT--EEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTC
T ss_pred EEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCC--eeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceE
Confidence 99999987 578999999999999999999999876 55899999998 8999999999999999999 889999999
Q ss_pred EEecCC-CccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC-----------CCCccccCCCEEE
Q psy3124 326 LLAKAD-TLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG-----------EDDGMLMPGEHGT 393 (463)
Q Consensus 326 vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~~l~~g~~~~ 393 (463)
+|++++ ++++++.|+|++.||+++ .+|..||++++|+|+.+++|++.... .++++|++||.+.
T Consensus 351 vl~~~~~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~ 425 (467)
T 1r5b_A 351 VLTSTKNPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKII 425 (467)
T ss_dssp EEECSSSCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCC
T ss_pred EEeCCCCCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEE
Confidence 999987 467899999999999873 68999999999999999999987321 1246899999999
Q ss_pred EEEEeceEEeeccCC------eEEEEeCCceEEEEEEeeecc
Q psy3124 394 VTMTLLYKMYLSKGQ------TFTIRENNKLVATGIVTKVLG 429 (463)
Q Consensus 394 v~~~~~~p~~~~~~~------rfilr~~~~tig~G~V~~~~~ 429 (463)
|+|+|.+|+|++++. ||+|||+++|+|+|+|+++++
T Consensus 426 v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 426 AELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp EEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 999999999999993 999999999999999998753
No 10
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-63 Score=527.69 Aligned_cols=376 Identities=28% Similarity=0.376 Sum_probs=292.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhh---------------HhcCccccccccccCCChhhhhcCceEEeeEEEEec
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVA---------------AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST 105 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 105 (463)
..++++||+++||+|+|||||+++|+... .+.|.+.+...+.+|..++|+++|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 35678999999999999999999996431 234556666778999999999999999999999999
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCCeEEEEEeccCccc--H
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-------MPQTREHLLLSKQIGIDNVVVYVNKADLVD--R 176 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-------~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~ 176 (463)
.++.++|||||||++|..+|..+++.+|++||||||++|. .+||++|+.++..+++|++|||+||||+++ +
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999864 899999999999999998999999999985 7
Q ss_pred HHHHHHHHHHHHHH-HHcCCCCCCCcEEEccchhhccCC-------CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceee
Q psy3124 177 EIMELVELEVRDVL-TAYGYDGDNTPFVFGSALLALQGD-------SSELGEPSIHRLLDALDKHIPNPVRDITSPFILP 248 (463)
Q Consensus 177 ~~~~~i~~~i~~~l-~~~g~~~~~~pvi~~Sa~~~~~~~-------~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~ 248 (463)
+.++.+.+++.+++ +.+++....+|++++||++|.+.. .+||.+. .|++.|...+| |.++.+.||+++
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~---~Lle~l~~~~p-p~~~~~~p~r~~ 408 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP---TLLSALDQLVP-PEKPYRKPLRLS 408 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSC---CHHHHHHTSCC-CSCTTTSCCEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchH---HHHHHHHhhcc-ccccccccchhe
Confidence 77888889999999 888887667899999999996543 4688664 57777777554 677789999999
Q ss_pred eEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccce-EEccCCeEEEEeccccccCcccceEE
Q psy3124 249 IDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVS-EARAGDNVGVLLRNVKLKQIERGMLL 327 (463)
Q Consensus 249 I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~vl 327 (463)
|+++|++ +.|++++|+|.+|+|++||.|.++|.+ ..++|++|++++.+++ +|.|||+|+++|++++..++++||+|
T Consensus 409 v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 409 IDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDIL 485 (592)
T ss_dssp EEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT--EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEE
T ss_pred eeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCC--ceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEe
Confidence 9999999 999999999999999999999999877 4689999999999999 99999999999999999999999999
Q ss_pred ecCCC-ccccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC---CCCccccCCCEEEEEEE-eceEE
Q psy3124 328 AKADT-LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG---EDDGMLMPGEHGTVTMT-LLYKM 402 (463)
Q Consensus 328 ~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~---~~~~~l~~g~~~~v~~~-~~~p~ 402 (463)
++++. ++++..|+|++.||+++ .||..||++++|+|+.+++|+|.+.. ..+++|++||.+.|+|+ +.+|+
T Consensus 486 ~~~~~~~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~ 560 (592)
T 3mca_A 486 SNYENPVRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLF 560 (592)
T ss_dssp ECSSSCCEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSCE
T ss_pred ccCCCCccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCcE
Confidence 99886 56789999999999874 69999999999999999999996532 34579999999999999 89999
Q ss_pred ee------ccCCeEEEEeCCceEEEEEEeeec
Q psy3124 403 YL------SKGQTFTIRENNKLVATGIVTKVL 428 (463)
Q Consensus 403 ~~------~~~~rfilr~~~~tig~G~V~~~~ 428 (463)
|+ .+++||+||++++|+|+|+|++++
T Consensus 561 ~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 561 PLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 99 456899999999999999999874
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.6e-58 Score=473.74 Aligned_cols=370 Identities=25% Similarity=0.312 Sum_probs=310.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh---Hhc------------Cc--cccccccccCCChhhhhcCceEEeeEEEEe
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA---AKI------------GK--SKFITFDQIDRAPEEKARGITINIAHVEYS 104 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~------------g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 104 (463)
.++.++|+++||+|+|||||+++|++.. ... |. ..+...+.+|..++|+++|+|++..+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3567999999999999999999997542 110 11 112222457888999999999999999999
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc--HHHHHHH
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELV 182 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~~~~~~i 182 (463)
+.++.++|+|||||++|..++..++..+|++|||+|+++|.++|+++|+.++..+++|++|+|+||+|+.+ ++.++.+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999985 5667778
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEccchhhccCC-----CCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCC
Q psy3124 183 ELEVRDVLTAYGYDGDNTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPG 257 (463)
Q Consensus 183 ~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~-----~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~ 257 (463)
.+++.++++.+++....+|++++||+++.+.. .+||.++.+.++ |.. ++.|.++.+.|++++|+++++..+
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~---l~~-i~~~~~~~~~~~~~~v~~v~~~~~ 256 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI---LET-VEIASDRNYTDLRFPVQYVNRPNL 256 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH---HHH-SCCTTCCCSSSCEEECCEEECSSS
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHH---Hhc-CCCcccCCCCCcEEEEEEEeccCC
Confidence 88899998888743345899999999985533 379877655444 444 577777788999999999999877
Q ss_pred CceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCc-ccc
Q psy3124 258 RGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL-QMH 336 (463)
Q Consensus 258 ~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~ 336 (463)
.|+.+.|+|.+|+|++||.|.++|.+ ..++|++|+.++.++++|.|||+|++.++ +..++++||+|++++.+ +++
T Consensus 257 ~~~g~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~ 332 (434)
T 1zun_B 257 NFRGFAGTLASGIVHKGDEIVVLPSG--KSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVS 332 (434)
T ss_dssp SCCEEEEECCBSCEETTCEEEETTTC--CEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETTSCCCEE
T ss_pred CceEEEEEEecceEeCCCEEEEecCC--eEEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCCCCCCcc
Confidence 78889999999999999999999876 45899999999999999999999999997 35689999999999865 789
Q ss_pred ceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecCC----------CCCccccCCCEEEEEEEeceEEeecc
Q psy3124 337 NRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPG----------EDDGMLMPGEHGTVTMTLLYKMYLSK 406 (463)
Q Consensus 337 ~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------~~~~~l~~g~~~~v~~~~~~p~~~~~ 406 (463)
++|+|++.||+ +.|+..||++++|+|+.+++|+|.... ..+++|++||.+.|+|+|.+|+|+++
T Consensus 333 ~~f~a~~~~l~------~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~ 406 (434)
T 1zun_B 333 DAFDAMLVWMA------EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDG 406 (434)
T ss_dssp EEEEEEEEECC------SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCC
T ss_pred cEEEEEEEEec------cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcc
Confidence 99999999996 258999999999999999999987321 23578999999999999999999999
Q ss_pred CC------eEEEEeC--CceEEEEEEe
Q psy3124 407 GQ------TFTIREN--NKLVATGIVT 425 (463)
Q Consensus 407 ~~------rfilr~~--~~tig~G~V~ 425 (463)
++ ||+|||. ++|+|+|+|+
T Consensus 407 ~~~~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 407 YSSNRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp TTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred cccCCccceEEEEECCCCcEEEEEEEe
Confidence 86 9999974 7899999996
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.6e-60 Score=494.96 Aligned_cols=361 Identities=29% Similarity=0.432 Sum_probs=309.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..++.++|+++||+|+|||||+++|++... ...+|..++|+++|+|++..+..++++++.++|+|||||++
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 85 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHH
Confidence 345689999999999999999999986421 12478888999999999998888888999999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc-CCCCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY-GYDGDN 199 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~-g~~~~~ 199 (463)
|.++|..+++.+|++||||||++|.++||++|+.++..+++|. |+|+||||+.+++.++.+.+++.++++.. ++. .
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~--~ 162 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK--N 162 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG--G
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccchhHHHHHHHHHHHHhhhcccc--c
Confidence 9999999999999999999999999999999999999999995 89999999998877888888999999877 553 4
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC--CCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP--VRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p--~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
+|++++||+++ .++++|+++|...++.| .++.+.|++++|+++|.+++.|+|++|+|.+|.|++||.|
T Consensus 163 ~~ii~vSA~~g----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v 232 (482)
T 1wb1_A 163 SSIIPISAKTG----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDEL 232 (482)
T ss_dssp CCEEECCTTTC----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEE
T ss_pred ceEEEEECcCC----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEE
Confidence 78999999999 99999999999877655 6777889999999999999999999999999999999999
Q ss_pred EEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEE-ecCCCccccceEEEEEEEeccCCCCCCcc
Q psy3124 278 ELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLL-AKADTLQMHNRYEAEIYLLSKAEGGRYKP 356 (463)
Q Consensus 278 ~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~v~~l~~~~~~~~~~ 356 (463)
.++|.+ ..++|++|+.+++++++|.|||+|++.+++++..++++||+| ++++++++++.|+|++.||++. +++
T Consensus 233 ~~~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~----~~~ 306 (482)
T 1wb1_A 233 KVLPIN--MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF----KYN 306 (482)
T ss_dssp CCTTTC--CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSC----CSC
T ss_pred EECCCC--cEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccC----Ccc
Confidence 998876 457999999999999999999999999999988999999999 7777788899999999999863 368
Q ss_pred ccCCcEEEEEEEEEEeeEEEecCC-C---------CCccccCCCEEEEEEEeceEEeeccCCeEEEEe---C---CceEE
Q psy3124 357 ITSKYIQQMFSRTWNVQVRLDLPG-E---------DDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRE---N---NKLVA 420 (463)
Q Consensus 357 i~~g~~~~~~~~~~~~~~~i~~~~-~---------~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~---~---~~tig 420 (463)
+..|+++++|+++.+++|++.... . .++.|++||.+.|+|+|.+|+|+++++||+||+ + ++|+|
T Consensus 307 l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg 386 (482)
T 1wb1_A 307 LTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXG 386 (482)
T ss_dssp CCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCC
T ss_pred cCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEee
Confidence 999999999999999999987543 1 036799999999999999999999999999999 4 69999
Q ss_pred EEEEeeecc
Q psy3124 421 TGIVTKVLG 429 (463)
Q Consensus 421 ~G~V~~~~~ 429 (463)
+|+|+++.+
T Consensus 387 ~G~v~~~~~ 395 (482)
T 1wb1_A 387 HGLIEEFKP 395 (482)
T ss_dssp BCCEEECCC
T ss_pred EEEEEeccc
Confidence 999999866
No 13
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.3e-57 Score=465.62 Aligned_cols=350 Identities=32% Similarity=0.443 Sum_probs=300.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC--------------
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-------------- 106 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 106 (463)
..++.++|+++||+|||||||+++|++. ..+..++|+++|+|++..+..+.+.
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 4567899999999999999999999854 3567788999999998765543321
Q ss_pred ---------CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEEeccCcccH
Q psy3124 107 ---------TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 107 ---------~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~ 176 (463)
.+.++|+|||||++|.++|.+++..+|++||||||++|. ++||++|+..+..++++++++|+||||+.+.
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 168999999999999999999999999999999999997 8999999999999999889999999999976
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecC
Q psy3124 177 EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVP 256 (463)
Q Consensus 177 ~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~ 256 (463)
+...+..++++++++... ...+|++++||+++ .++++|+++|...+|.|.++.+.|++++|+++|.++
T Consensus 153 ~~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~ 220 (410)
T 1kk1_A 153 EKALENYRQIKEFIEGTV--AENAPIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220 (410)
T ss_dssp HHHHHHHHHHHHHHTTST--TTTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHhcC--cCCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEecc
Confidence 655556667777776542 23589999999999 999999999999899998888999999999999875
Q ss_pred C--------CceEEEEEEecccccCCCEEEEecCCc----------eeeEEEEEEeeccccceEEccCCeEEEEec---c
Q psy3124 257 G--------RGSVCIGTIKQGTIKRNDEAELLGFNS----------KFTCTISEIQVFQKKVSEARAGDNVGVLLR---N 315 (463)
Q Consensus 257 ~--------~G~vv~G~v~~G~l~~gd~v~i~~~~~----------~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~ 315 (463)
+ +|+|++|+|.+|+|++||+|.++|.+. +..++|++|+.++.++++|.|||+|++.++ +
T Consensus 221 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~ 300 (410)
T 1kk1_A 221 KPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPY 300 (410)
T ss_dssp CCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGG
T ss_pred CCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcc
Confidence 4 788999999999999999999987532 136899999999999999999999999986 4
Q ss_pred ccccCcccceEEecCCCc-cccceEEEEEEEeccCCCCC----CccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCC
Q psy3124 316 VKLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKAEGGR----YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGE 390 (463)
Q Consensus 316 ~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~ 390 (463)
+...++.+||+|++++.+ +.++.|+|++.||+++++.+ .++|..|+.+++|+++.+++|+|..... |
T Consensus 301 ~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------~ 372 (410)
T 1kk1_A 301 LTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK--------D 372 (410)
T ss_dssp GTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET--------T
T ss_pred cchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC--------C
Confidence 666889999999999865 55789999999999865443 3789999999999999999999976532 2
Q ss_pred EEEEEEEeceEEeeccCCeEEEEe----CCceEEEEEEe
Q psy3124 391 HGTVTMTLLYKMYLSKGQTFTIRE----NNKLVATGIVT 425 (463)
Q Consensus 391 ~~~v~~~~~~p~~~~~~~rfilr~----~~~tig~G~V~ 425 (463)
.|+|+|.+|+|+++|+||+||+ .+||+|+|.|+
T Consensus 373 --~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 373 --EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp --EEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred --EEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 7888999999999999999998 67999999997
No 14
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=9.8e-58 Score=465.99 Aligned_cols=349 Identities=29% Similarity=0.416 Sum_probs=288.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec---------------C
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---------------N 106 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------~ 106 (463)
.++.++|+++||+|||||||+++|++. ..+..++|+++|+|++..+..+.. .
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 456899999999999999999999754 356778899999999876543322 1
Q ss_pred --------CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEEeccCcccHH
Q psy3124 107 --------TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVDRE 177 (463)
Q Consensus 107 --------~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~ 177 (463)
.+.++|+|||||++|.++|.+++..+|++|||+||++|. ++||++|+..+..++++++++|+||+|+.+.+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 168999999999999999999999999999999999997 89999999999999997799999999998654
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCC
Q psy3124 178 IMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPG 257 (463)
Q Consensus 178 ~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~ 257 (463)
......++++++++... ...+|++++||+++ .++++|+++|...++.|.++.+.|++++|+++|.+++
T Consensus 152 ~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~ 219 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTI--AENAPIIPISAHHE----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINK 219 (408)
T ss_dssp TTTTHHHHHHHHHTTST--TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhhcC--CCCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecC
Confidence 33334456677776543 24589999999999 9999999999998998988889999999999998864
Q ss_pred --------CceEEEEEEecccccCCCEEEEecCCc----------eeeEEEEEEeeccccceEEccCCeEEEEec---cc
Q psy3124 258 --------RGSVCIGTIKQGTIKRNDEAELLGFNS----------KFTCTISEIQVFQKKVSEARAGDNVGVLLR---NV 316 (463)
Q Consensus 258 --------~G~vv~G~v~~G~l~~gd~v~i~~~~~----------~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~ 316 (463)
+|+|++|+|.+|+|++||.|.++|.+. +..++|++|+.++.++++|.|||+|++.++ ++
T Consensus 220 ~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~ 299 (408)
T 1s0u_A 220 PGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYL 299 (408)
T ss_dssp SSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGG
T ss_pred CCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCccc
Confidence 788999999999999999999987431 236899999999999999999999999986 67
Q ss_pred cccCcccceEEecCCCc-cccceEEEEEEEeccCCCCC----CccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCE
Q psy3124 317 KLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKAEGGR----YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEH 391 (463)
Q Consensus 317 ~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~ 391 (463)
+..++++||+|++++.+ +.++.|+|++.||+++++++ ..+|..|+.+++|+++.+++|+|..... |
T Consensus 300 ~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------~- 370 (408)
T 1s0u_A 300 TKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG--------D- 370 (408)
T ss_dssp TGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET--------T-
T ss_pred chhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC--------C-
Confidence 77899999999999865 55789999999999865543 4789999999999999999999976532 2
Q ss_pred EEEEEEeceEEeeccCCeEEEEe----CCceEEEEEEe
Q psy3124 392 GTVTMTLLYKMYLSKGQTFTIRE----NNKLVATGIVT 425 (463)
Q Consensus 392 ~~v~~~~~~p~~~~~~~rfilr~----~~~tig~G~V~ 425 (463)
.|+|+|.+|+|+++|+||+||+ .+||+|+|.|+
T Consensus 371 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 371 -IADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp -EEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred -EEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 7888999999999999999998 57999999986
No 15
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=5.6e-58 Score=460.17 Aligned_cols=334 Identities=20% Similarity=0.314 Sum_probs=293.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHHH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMI 126 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 126 (463)
+|+++||+|+|||||+++|+ ++|+|++..+..+++.++.++|+|||||++|.++|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999985 458899888889999999999999999999999999
Q ss_pred hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEe-ccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEE-
Q psy3124 127 SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVN-KADLVDREIMELVELEVRDVLTAYGYDGDNTPFVF- 204 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvN-KiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~- 204 (463)
.+++.+|++||||| ++|.++||++|+.++..+++|.+|+++| |||+ +++.++.+.++++++++..++ ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~--~~~~ii~~ 154 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVL--QDWECISL 154 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTT--TTCEEEEC
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCC--CceEEEec
Confidence 99999999999999 9999999999999999999997688999 9999 777677777888888877654 3589999
Q ss_pred -ccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC---CC-CCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEE
Q psy3124 205 -GSALLALQGDSSELGEPSIHRLLDALDKHIPNPV---RD-ITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAEL 279 (463)
Q Consensus 205 -~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~---~~-~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i 279 (463)
+||+++ .|. .|+++|++.|...++.+. .. ...|++++|+++|++++.|++++|+|.+|+|++||+|.+
T Consensus 155 ~~SA~~~-----~~g--~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~ 227 (370)
T 2elf_A 155 NTNKSAK-----NPF--EGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKI 227 (370)
T ss_dssp CCCTTSS-----STT--TTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEE
T ss_pred ccccccC-----cCC--CCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEE
Confidence 999992 121 899999999988766541 11 345677889999999999999999999999999999999
Q ss_pred ecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCcccceEEecCCCccccceEEEEEEEeccCCCCCCccccC
Q psy3124 280 LGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITS 359 (463)
Q Consensus 280 ~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~ 359 (463)
+|.+ ..++|++|+.++.++++|.|||+|++.|++++.+++++||+|++ ++ +++++|+|++.||++ ++||..
T Consensus 228 ~p~~--~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~-----~~~i~~ 298 (370)
T 2elf_A 228 FPLD--RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKF-----TKKIEP 298 (370)
T ss_dssp ETTT--EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTT-----SCCBCT
T ss_pred CCCC--cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECC-----CCCCCC
Confidence 9876 56899999999999999999999999999999999999999999 66 889999999999986 368999
Q ss_pred CcEEEEEEEEEEeeEEEecC--CC-CCccccCCCEEEEEEEeceEEeeccCCeEEEEeCC---ceEEEEEE
Q psy3124 360 KYIQQMFSRTWNVQVRLDLP--GE-DDGMLMPGEHGTVTMTLLYKMYLSKGQTFTIRENN---KLVATGIV 424 (463)
Q Consensus 360 g~~~~~~~~~~~~~~~i~~~--~~-~~~~l~~g~~~~v~~~~~~p~~~~~~~rfilr~~~---~tig~G~V 424 (463)
||.+++|+++.+++|++... +. ..+.+++||.+.|+|+|.+|+|+++|+||+||+++ +|+|+|+|
T Consensus 299 g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~~~~~~~tig~G~~ 369 (370)
T 2elf_A 299 ASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFS 369 (370)
T ss_dssp TCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECTTSSSCEEEEEEE
T ss_pred CCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEECCCCCEEEEEEEe
Confidence 99999999999999999854 21 11356799999999999999999999999999865 69999987
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=6.7e-55 Score=444.35 Aligned_cols=362 Identities=25% Similarity=0.308 Sum_probs=294.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEE-----ecCCeeEEEEeC
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY-----STNTRHYAHTDC 115 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-----~~~~~~i~liDt 115 (463)
..++.++|+++||+|+|||||+++|++.......+... .........+..++.+.+...... ....+.++|+||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 44568999999999999999999998742221100000 000000111112222222111000 112268999999
Q ss_pred CChhhhHHHHHhhcccCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 116 PGHADYIKNMISGASQMDGAIVVVAASEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 116 PGh~~f~~~~~~~~~~aD~ailVVda~~g~-~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
|||++|.++|..++..+|++|+|+||+++. ++|+++|+..+..++++++++|+||+|+.+.+...+..+++.++++..+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~ 162 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW 162 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999997 9999999999999999779999999999987766677778888877654
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCC--------CceEEEEEE
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPG--------RGSVCIGTI 266 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~--------~G~vv~G~v 266 (463)
. ..+|++++||+++ .++++|+++|.+.++.|.++.+.|++++|+++|.+++ +|+|++|+|
T Consensus 163 ~--~~~~ii~vSA~~g----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v 230 (403)
T 3sjy_A 163 A--ENVPIIPVSALHK----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSI 230 (403)
T ss_dssp T--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEE
T ss_pred C--CCCEEEEEECCCC----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEE
Confidence 3 4589999999999 9999999999998999988889999999999999876 899999999
Q ss_pred ecccccCCCEEEEecCCc----------eeeEEEEEEeeccccceEEccCCeEEEEec---cccccCcccceEEecCCCc
Q psy3124 267 KQGTIKRNDEAELLGFNS----------KFTCTISEIQVFQKKVSEARAGDNVGVLLR---NVKLKQIERGMLLAKADTL 333 (463)
Q Consensus 267 ~~G~l~~gd~v~i~~~~~----------~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~ 333 (463)
.+|+|++||+|.+.|.+. ...++|++|+.+++++++|.|||+|++.|+ +++..++++||+|++++.+
T Consensus 231 ~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp EESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTCC
T ss_pred EeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCCC
Confidence 999999999999988542 125799999999999999999999999986 6667899999999999875
Q ss_pred -cccceEEEEEEEeccCCCCC----CccccCCcEEEEEEEEEEeeEEEecCCCCCccccCCCEEEEEEEeceEEeeccCC
Q psy3124 334 -QMHNRYEAEIYLLSKAEGGR----YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQ 408 (463)
Q Consensus 334 -~~~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~ 408 (463)
+.++.|+|++.||++.++++ .+|+..|+++++|+++.++.|+|.....+ .++|+|.+|+|++.|+
T Consensus 311 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~~----------~~~~~l~~p~~~~~g~ 380 (403)
T 3sjy_A 311 VPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKD----------EIEVELRRPVAVWSNN 380 (403)
T ss_dssp CCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECSS----------EEEEEEEEEEECCSSS
T ss_pred CcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecCc----------eEEEEeCCcEeeccCC
Confidence 45789999999999866544 57999999999999999999999876432 6889999999999999
Q ss_pred -eEEE-EeC---CceEEEEEEe
Q psy3124 409 -TFTI-REN---NKLVATGIVT 425 (463)
Q Consensus 409 -rfil-r~~---~~tig~G~V~ 425 (463)
||+| |+. .|++|+|.|+
T Consensus 381 ~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 381 IRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp CEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEeCCcEEEEEEEEEE
Confidence 9998 543 3699999985
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2e-40 Score=348.14 Aligned_cols=271 Identities=24% Similarity=0.319 Sum_probs=205.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccc---cccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFI---TFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~---~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
..+||+|+||+|||||||+++|+ +.+...|..... ....+|+.+.|++||+|+..+...+.|.++.++||||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 47999999999999999999995 334444432221 234789999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH-----
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA----- 192 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~----- 192 (463)
|.||..++.++++.+|+||+||||.+|+++||+..|++|...++| .+++|||||+...+. ..+.+++++.|..
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~-~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTFVNKMDREALHP-LDVMADIEQHLQIECAPM 187 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCCH-HHHHHHHHHHHTSEEEES
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEEEecccchhcch-hHhhhhhhhhcCCceEeE
Confidence 999999999999999999999999999999999999999999999 678999999974432 3333344443310
Q ss_pred ------------------------------------------------------------------cC--------CCCC
Q psy3124 193 ------------------------------------------------------------------YG--------YDGD 198 (463)
Q Consensus 193 ------------------------------------------------------------------~g--------~~~~ 198 (463)
.+ ..+.
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 00 1123
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC---------CCCCCceeeeEEEEec---CCCceEEEEEE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR---------DITSPFILPIDNAIGV---PGRGSVCIGTI 266 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~---------~~~~p~~~~I~~~~~~---~~~G~vv~G~v 266 (463)
.+|+++.||+++ .|++.||+++..++|+|.. +.+.||...|++++.. +..|.+.++||
T Consensus 268 ~~PV~~gSA~~~----------~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV 337 (548)
T 3vqt_A 268 LTPVFFGSAINN----------FGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRI 337 (548)
T ss_dssp EEEEEECBGGGT----------BSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEE
T ss_pred cceeeecccccC----------cCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEE
Confidence 479999999999 9999999999999999864 3467899999998876 78999999999
Q ss_pred ecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCCC
Q psy3124 267 KQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 267 ~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
.||+|+.||.|++...+ .+.+|..+... ..++++|.|||++++. ...+++.||+||+.+.
T Consensus 338 ~sG~l~~g~~v~~~~~~--~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 338 CSGTFTRGMRLKHHRTG--KDVTVANATIFMAQDRTGVEEAFPGDIIGIP----NHGTIKIGDTFTESKE 401 (548)
T ss_dssp EESCEETTCEEEETTTT--EEEECTTCEECCCSSCCSSCEECTTCEEEEE----CSSCCCTTCEEESSSS
T ss_pred ecceecCCCEEEeeccc--cccccchhhhhccccccccCEEecCCEEEec----CCccCccCCEecCCCC
Confidence 99999999999987655 44677777664 3589999999999875 5578999999998754
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.1e-37 Score=326.15 Aligned_cols=265 Identities=25% Similarity=0.357 Sum_probs=202.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----CeeEEEEeC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-----TRHYAHTDC 115 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDt 115 (463)
..+||+++||+|||||||+++|+... .+.+ ...+.+|..+.|+++|+|+......+.+. ...++||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~----~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISERE----KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCccccc----ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 47899999999999999999997532 1111 12346899999999999998765555442 368899999
Q ss_pred CChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 116 PGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 116 PGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
|||.+|..++.++++.+|++||||||++|...||.+++..+...++| +|+|+||||+.+.+ .+.+.+++.+ .+++
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~-~~~v~~el~~---~lg~ 155 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD-VDRVKKQIEE---VLGL 155 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC-HHHHHHHHHH---TSCC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC-HHHHHHHHHH---hhCC
Confidence 99999999999999999999999999999999999999999999999 88999999998543 2333344433 2344
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRND 275 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd 275 (463)
. ..+++++||+++ .|+++|+++|...+|+|..+.+.|+++.|++++.+++.|++++|+|.+|+|++||
T Consensus 156 ~--~~~vi~vSAktg----------~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd 223 (600)
T 2ywe_A 156 D--PEEAILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGD 223 (600)
T ss_dssp C--GGGCEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTC
T ss_pred C--cccEEEEEeecC----------CCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCC
Confidence 3 246899999999 9999999999999999988889999999999999999999999999999999999
Q ss_pred EEEEecCCceeeEEEEEEeec---cccceEEccCCeEEEEeccc-cccCcccceEEecCCC
Q psy3124 276 EAELLGFNSKFTCTISEIQVF---QKKVSEARAGDNVGVLLRNV-KLKQIERGMLLAKADT 332 (463)
Q Consensus 276 ~v~i~~~~~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~ 332 (463)
.|.+++.+. ..+|++|..+ ..+++++.|||++.+ +.++ +..++++||+|++++.
T Consensus 224 ~I~~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGdi~~v-~~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 224 KIMLMSTGK--EYEVTEVGAQTPKMTKFDKLSAGDVGYI-AASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp EEEETTTTE--EEECCEEEEESSSEEEESCEETTCEEEE-ESSCCCTTSSCTTCEEEESSS
T ss_pred EEEeccccc--eEeeecccccCCCceECCEEecCceeee-eccccchhhccCCCEEEeCCC
Confidence 999998763 4677777664 368999999995554 4666 4678999999998654
No 19
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.2e-36 Score=321.13 Aligned_cols=268 Identities=27% Similarity=0.393 Sum_probs=199.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----CeeEEEEeCCCh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-----TRHYAHTDCPGH 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPGh 118 (463)
..+||+++||+|||||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. ...++|||||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 478999999999999999999975321110000 12346899999999999998876666553 378999999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+|..++.++++.+|++|+|+||++|...||.+++..+...++| +|+|+||+|+.+.+ .+.+.+++.+. +++..
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~-~~~v~~ei~~~---lg~~~- 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD-PERVAEEIEDI---VGIDA- 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC-HHHHHHHHHHH---TCCCC-
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc-HHHHHHHHHHH---hCCCc-
Confidence 99999999999999999999999999999999999999999998 88999999998543 23334444443 34432
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAE 278 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~ 278 (463)
.+++++||+++ .|+++|+++|...+|.|..+.+.|+++.|++++.+++.|++++|+|.+|+|++||.+.
T Consensus 156 -~~vi~vSAktg----------~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~ 224 (599)
T 3cb4_D 156 -TDAVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVK 224 (599)
T ss_dssp -TTCEEECTTTC----------TTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEE
T ss_pred -ceEEEeecccC----------CCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEE
Confidence 46899999999 9999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCceeeEEEEEEeec---cccceEEccCCeEEEEeccc-cccCcccceEEecCCC
Q psy3124 279 LLGFNSKFTCTISEIQVF---QKKVSEARAGDNVGVLLRNV-KLKQIERGMLLAKADT 332 (463)
Q Consensus 279 i~~~~~~~~~~V~sI~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~ 332 (463)
+++.++ ..+|.+|... ..+++++.|||. +..+.++ +..++++||+|++++.
T Consensus 225 ~~~~~~--~~~v~~i~~~~~~~~~~~~~~aGdi-~~~~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 225 VMSTGQ--TYNADRLGIFTPKQVDRTELKCGEV-GWLVCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp ETTTCC--EEECCEEEEESSSEEECSEECTTCE-EEEECCCSSGGGSCTTCEEEESSS
T ss_pred eccccc--eeEEeeeeeccCCceECCEEcCCCe-eEeeccccccccCccCCEeeecCC
Confidence 998764 3567777664 468999999994 4445565 4678999999998654
No 20
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-37 Score=331.48 Aligned_cols=270 Identities=25% Similarity=0.331 Sum_probs=199.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-------CeeEEEE
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-------TRHYAHT 113 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------~~~i~li 113 (463)
.++||+|+||+|||||||+.+|+ +.....|+.... ...+|..+.|++||+|+..+...+.|. ++.++||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~-~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG-AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC-CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 48999999999999999999995 444444443221 236899999999999999888777664 5789999
Q ss_pred eCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH--
Q psy3124 114 DCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLT-- 191 (463)
Q Consensus 114 DtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~-- 191 (463)
|||||.||..++.++++.+|+||+||||.+|++.||+..|++|...++| .|++|||||+...+. +.+.+++++.+.
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~~-~~~~~ei~~~l~~~ 168 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGANF-LRVVEQIKKRLGHT 168 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTCCH-HHHHHHHHHHHCSC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCccH-HHHHHHhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999 678999999863221 112222222110
Q ss_pred --------------------------------------------------------------------------H-----
Q psy3124 192 --------------------------------------------------------------------------A----- 192 (463)
Q Consensus 192 --------------------------------------------------------------------------~----- 192 (463)
.
T Consensus 169 ~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~ 248 (709)
T 4fn5_A 169 PVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSE 248 (709)
T ss_dssp EEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCH
T ss_pred eeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccH
Confidence 0
Q ss_pred ---------cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC--------------------CCCCC
Q psy3124 193 ---------YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV--------------------RDITS 243 (463)
Q Consensus 193 ---------~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~--------------------~~~~~ 243 (463)
.-......|++..||..+ .++..||+++..++|+|. .+.+.
T Consensus 249 ~~~~~~l~~~~~~~~~~pv~~gsa~~~----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~ 318 (709)
T 4fn5_A 249 AEIKEGLRLRTLACEIVPAVCGSSFKN----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNE 318 (709)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTT----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTS
T ss_pred HHHHHHHHHhhhhceeeeeeeeecccC----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccC
Confidence 001123478999999998 899999999999999984 24578
Q ss_pred CceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEecccccc
Q psy3124 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLK 319 (463)
Q Consensus 244 p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~ 319 (463)
||.+.|+++...+..|.+.++||.||+|++||+|++...++ ..+|..|... ..++++|.||+++++. |+ .
T Consensus 319 pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--Gl--~ 392 (709)
T 4fn5_A 319 PFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGK--KERVGRMVQMHANQREEIKEVRAGDIAALI--GM--K 392 (709)
T ss_dssp CCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCC--CCBCCCEECCCSSCCCEESEECTTCEEEEC--SC--S
T ss_pred cceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCc--EEeecceeEeecceeeEeeeecCCCeeeec--CC--C
Confidence 99999999999999999999999999999999998765543 3466777554 3689999999998873 44 5
Q ss_pred CcccceEEecCCC
Q psy3124 320 QIERGMLLAKADT 332 (463)
Q Consensus 320 ~i~~G~vl~~~~~ 332 (463)
++..||+|++.+.
T Consensus 393 ~~~~gdTl~~~~~ 405 (709)
T 4fn5_A 393 DVTTGDTLCSIEK 405 (709)
T ss_dssp SCCTTCEEECSSS
T ss_pred cCccCCEecCCCc
Confidence 7899999998653
No 21
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=7.4e-39 Score=342.75 Aligned_cols=266 Identities=22% Similarity=0.321 Sum_probs=215.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH---hhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAIT---KVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~---~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
++||+|+||+|||||||+++|+ +.+.+.|.... ....+|+.+.|++||+|+..+...+.|.++.++|||||||.||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~-g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDK-GTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCC-SCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCcccccccc-CCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 6899999999999999999995 33444444322 2347899999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHH-----------
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVL----------- 190 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l----------- 190 (463)
..++.++++.+|+||+||||.+|+++||+.+|+++..+++| .|+++||||+...+. +.+.+++++.|
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~-~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP-TIFFINKIDQNGIDL-STVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCS-HHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-eEEEEeccccccCCH-HHHHHHHHHHhCCCccccceeE
Confidence 99999999999999999999999999999999999999999 568899999873221 11111221111
Q ss_pred -------------------------------HHcCC--------------CCCCCcEEEccchhhccCCCCCCCCccHHH
Q psy3124 191 -------------------------------TAYGY--------------DGDNTPFVFGSALLALQGDSSELGEPSIHR 225 (463)
Q Consensus 191 -------------------------------~~~g~--------------~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~ 225 (463)
....+ .....|+++.||+++ .|++.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~----------~Gv~~ 228 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN----------IGIDN 228 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC----------CSHHH
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC----------CCchh
Confidence 10000 113479999999998 89999
Q ss_pred HHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccce
Q psy3124 226 LLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVS 301 (463)
Q Consensus 226 Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~ 301 (463)
||+++.+++|+|..+.+.||...|+++..++++|.+.++||.||+|+.||.|.+...+ +.+|..+... ..+++
T Consensus 229 LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~v~~l~~~~g~~~~~v~ 305 (638)
T 3j25_A 229 LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE---KIKVTEMYTSINGELCKID 305 (638)
T ss_dssp HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC---CSSBCCCCSSCCCCBSCCC
T ss_pred HhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc---ceeEEeeeccccccccccc
Confidence 9999999999999888999999999999999999999999999999999999776433 2356666543 35899
Q ss_pred EEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 302 EARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 302 ~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
+|.|||++++. + ..++.|+++++..
T Consensus 306 ~a~aGdIv~i~--g---~~~~~~~tl~d~~ 330 (638)
T 3j25_A 306 RAYSGEIVILQ--N---EFLKLNSVLGDTK 330 (638)
T ss_dssp TTBCCCCSCCC--S---SSCSSEECSSSSS
T ss_pred ccccceEEEEe--c---cccccCceecCCC
Confidence 99999988763 2 4567888888764
No 22
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=7.8e-36 Score=311.70 Aligned_cols=270 Identities=24% Similarity=0.347 Sum_probs=216.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh---hhHhcCcccc---ccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITK---VAAKIGKSKF---ITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~---~~~~~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
..++|+++||+|||||||+++|+. .....|.... ......|..+.|+++|+|+......+.+.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 478999999999999999999952 2222221111 1123467778899999999998899999999999999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc----
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY---- 193 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~---- 193 (463)
|.+|...+..+++.+|++|+|+|+.+|...++..++..+...++| +++|+||+|+...+.. ...+++++.+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~-~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSI-ELLDEIESILRIHCAPV 169 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHH-HHHHHHHHHHCCEEEES
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHH-HHHHHHHHhhCCCceee
Confidence 999999999999999999999999999999999999999999999 8899999999743321 2223333332110
Q ss_pred ----C-----------------------------------------------------------------------CCCC
Q psy3124 194 ----G-----------------------------------------------------------------------YDGD 198 (463)
Q Consensus 194 ----g-----------------------------------------------------------------------~~~~ 198 (463)
+ ..+.
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 0 0112
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC---------CCCCceeeeEEEEe--cC-CCceEEEEEE
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD---------ITSPFILPIDNAIG--VP-GRGSVCIGTI 266 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~---------~~~p~~~~I~~~~~--~~-~~G~vv~G~v 266 (463)
.+|++++||+++ .|+++|+++|.+++|+|... .+.||...|+++.. ++ ++|+++++||
T Consensus 250 ~~PV~~gSA~~~----------~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV 319 (528)
T 3tr5_A 250 LTPIFFGSAINN----------FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRI 319 (528)
T ss_dssp EEEEEECBGGGT----------BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEE
T ss_pred eeEEEeccccCC----------ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEE
Confidence 359999999999 99999999999999988642 25799999999874 66 8999999999
Q ss_pred ecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 267 KQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 267 ~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
.||+|++||.|.+.+.+ .+.+|.++... +.++++|.|||++++. +..+++.||+||+..
T Consensus 320 ~sG~l~~g~~v~~~~~~--~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~----~l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 320 ASGQYQKGMKAYHVRLK--KEIQINNALTFMAGKRENAEEAWPGDIIGLH----NHGTIQIGDTFTQGE 382 (528)
T ss_dssp EESCEETTEEEEETTTT--EEEEESSCBCCBTTCSSCCSEECTTCEEEEE----ESSSCCTTCEEESSC
T ss_pred ecCeEcCCCEEEecCCC--ceEEEeeeEEEeCCCeeECCEECCCCEEEEc----CCCCCccCCEEcCCC
Confidence 99999999999998766 45789998764 4689999999998874 457789999999754
No 23
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.2e-35 Score=308.64 Aligned_cols=271 Identities=24% Similarity=0.324 Sum_probs=200.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh---hHhcCcccc---ccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKF---ITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
..++|+++||+|||||||+++|+.. ....|.... .....+|+.+.|+++|+|+......+.+.+..++|+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4789999999999999999999753 111121110 0123578888999999999988888999999999999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH-----
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA----- 192 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~----- 192 (463)
|.+|...+.+++..+|++|+|+|+.+|...|+.+++..+...++| +++|+||+|+...+. .++.+++++.+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-MELLDEVENELKIGCAPI 169 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-HHHHHHHHHHHCCEEEES
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-HHHHHHHHHHhCCCccce
Confidence 999999999999999999999999999999999999999999999 889999999985332 1223333332210
Q ss_pred -----------------------c----C------------------------------------------------CCC
Q psy3124 193 -----------------------Y----G------------------------------------------------YDG 197 (463)
Q Consensus 193 -----------------------~----g------------------------------------------------~~~ 197 (463)
+ | ..+
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 249 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAG 249 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTT
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhC
Confidence 0 0 011
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC---------CCCCceeeeEEEEe---cCCCceEEEEE
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD---------ITSPFILPIDNAIG---VPGRGSVCIGT 265 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~---------~~~p~~~~I~~~~~---~~~~G~vv~G~ 265 (463)
..+|++++||+++ .|+++||++|..++|+|... .+.||...|+++.. .+++|++++||
T Consensus 250 ~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~R 319 (529)
T 2h5e_A 250 EITPVFFGTALGN----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMR 319 (529)
T ss_dssp SEEEEEECBTTTT----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEE
T ss_pred ceeEEEeeecccC----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEE
Confidence 2368999999998 99999999999999988642 14688888888754 45689999999
Q ss_pred EecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCCC
Q psy3124 266 IKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 266 v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
|.||+|++||.|.+.+.+ ...+|++|+.+ +.++++|.|||+|++. ...+++.||+|++++.
T Consensus 320 V~sG~l~~g~~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~----~l~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 320 VVSGKYEKGMKLRQVRTA--KDVVISDALTFMAGDRSHVEEAYPGDILGLH----NHGTIQIGDTFTQGEM 384 (529)
T ss_dssp EEESCEETTCEEEETTTT--EEEECSCEECCCC-----CCEECTTCEEEEC----CSSCCCTTCEEESSCC
T ss_pred EecCeEcCCCEEEEeeCC--CEEEeceeeEEeCCCceEcceECCCCEEEEe----ccCCCccCCEeecCCc
Confidence 999999999999998866 45789999875 5789999999999884 4578899999998653
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.7e-34 Score=311.67 Aligned_cols=270 Identities=25% Similarity=0.319 Sum_probs=219.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-------eeEEE
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-------RHYAH 112 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-------~~i~l 112 (463)
...+||+++||+|||||||+++|+.. ....|.... ....+|+.+.|+++|+|+......+.+.+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~-g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHD-GAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCC-CceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 35789999999999999999999643 222222111 12468899999999999998887777776 89999
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
||||||.+|..++.++++.+|++|+|||+++|...||.+++..+...++| +++|+||+|+...+ ++.+.+++++.+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~-~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN-FLKVVNQIKTRLGA 164 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc-HHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999 77899999997543 23344444433321
Q ss_pred c---------------------------------C---------------------------------------------
Q psy3124 193 Y---------------------------------G--------------------------------------------- 194 (463)
Q Consensus 193 ~---------------------------------g--------------------------------------------- 194 (463)
. |
T Consensus 165 ~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~ 244 (704)
T 2rdo_7 165 NPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELT 244 (704)
T ss_pred CceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCC
Confidence 0 0
Q ss_pred ------------CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC--------------------CCC
Q psy3124 195 ------------YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR--------------------DIT 242 (463)
Q Consensus 195 ------------~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~--------------------~~~ 242 (463)
.....+|++++||+++ .|++.||+++..++|+|.. +.+
T Consensus 245 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (704)
T 2rdo_7 245 EAEIKGALRQRVLNNEIILVTCGSAFKN----------KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDD 314 (704)
T ss_pred HHHHHHHHHHHHHhCCeeEEEEeecccC----------ccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCC
Confidence 0012368999999998 8999999999999998854 257
Q ss_pred CCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccc
Q psy3124 243 SPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKL 318 (463)
Q Consensus 243 ~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~ 318 (463)
.||.+.|++++.++++|++++|||.||+|++||.|++.+.+ .+.+|.+|... ..++++|.|||++++. | .
T Consensus 315 ~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--g--l 388 (704)
T 2rdo_7 315 EPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKA--ARERFGRIVQMHANKREEIKEVRAGDIAAAI--G--L 388 (704)
T ss_pred CceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCC--cEEEeceEEEEeCCCceEcceeCCCCEEEEe--C--c
Confidence 79999999999999999999999999999999999987655 34688888764 4689999999999985 4 4
Q ss_pred cCcccceEEecCC
Q psy3124 319 KQIERGMLLAKAD 331 (463)
Q Consensus 319 ~~i~~G~vl~~~~ 331 (463)
+++++||+|++.+
T Consensus 389 ~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 389 KDVTTGDTLCDPD 401 (704)
T ss_pred ccCccCCEEeCCC
Confidence 5789999999865
No 25
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=265.83 Aligned_cols=181 Identities=18% Similarity=0.310 Sum_probs=162.1
Q ss_pred CCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccC
Q psy3124 241 ITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQ 320 (463)
Q Consensus 241 ~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~ 320 (463)
.++||+|+|+++|+ +.|+++.|+|++|+|++||+|.++|.+ .+++|++|+++++++++|.|||+|+++|+|++..+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~--~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK--HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT--EEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC--CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHH
Confidence 47899999999998 799999999999999999999999976 66899999999999999999999999999999999
Q ss_pred cccceEEecCCCc-cccceEEEEEEEeccCCCCCCccccCCcEEEEEEEEEEeeEEEecC-------C-----CCCcccc
Q psy3124 321 IERGMLLAKADTL-QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLP-------G-----EDDGMLM 387 (463)
Q Consensus 321 i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------~-----~~~~~l~ 387 (463)
+++||+|++++.+ +.++.|+|+|.||+++ .+|..||++.+|+|+.+++|++..+ + ..+++|+
T Consensus 79 i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~ 153 (204)
T 3e1y_E 79 ILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVK 153 (204)
T ss_dssp CCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCC
T ss_pred CccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcC
Confidence 9999999999864 7899999999999874 5899999999999999999998732 1 1246899
Q ss_pred CCCEEEEEEEeceEEeeccC------CeEEEEeCCceEEEEEEeeeccC
Q psy3124 388 PGEHGTVTMTLLYKMYLSKG------QTFTIRENNKLVATGIVTKVLGN 430 (463)
Q Consensus 388 ~g~~~~v~~~~~~p~~~~~~------~rfilr~~~~tig~G~V~~~~~~ 430 (463)
+||.+.|+|++.+|+|++++ +||+|||+++|+|+|+|+++.+.
T Consensus 154 ~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 154 QDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp TTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred CCCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 99999999999999999997 89999999999999999998864
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.8e-33 Score=301.88 Aligned_cols=271 Identities=27% Similarity=0.328 Sum_probs=203.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh---hHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV---AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
...+||+++||+|||||||+++|+.. ....|.... ....+|+.+.|+++|+|+......+.+.+..++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~-~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHE-GAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecC-CceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 45799999999999999999999743 222221111 12467889999999999999888888889999999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH-------
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA------- 192 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~------- 192 (463)
+|...+.++++.+|++|+|+|+.++...|+.+++..+...++| +++|+||+|+...+ ++.+.+++++.+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-~~~~~~~l~~~l~~~~~~~~~ 166 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD-LWLVIRTMQERLGARPVVMQL 166 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-HHHHHHHHHHTTCCCEEECEE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC-HHHHHHHHHHHhCCCccceec
Confidence 9999999999999999999999999999999999999999999 77899999997432 22333333332210
Q ss_pred --------------------------------------------------------------------------------
Q psy3124 193 -------------------------------------------------------------------------------- 192 (463)
Q Consensus 193 -------------------------------------------------------------------------------- 192 (463)
T Consensus 167 Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~ 246 (691)
T 1dar_A 167 PIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246 (691)
T ss_dssp EESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence
Q ss_pred --cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC------------------CCCCCceeeeEEE
Q psy3124 193 --YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR------------------DITSPFILPIDNA 252 (463)
Q Consensus 193 --~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~------------------~~~~p~~~~I~~~ 252 (463)
.-.....+|++++||+++ .|++.||++|..++|+|.. +.+.||.+.|+++
T Consensus 247 ~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~ 316 (691)
T 1dar_A 247 RKGTIDLKITPVFLGSALKN----------KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKI 316 (691)
T ss_dssp HHHHHTTSCEEEEECBGGGT----------BSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEE
T ss_pred HHHHHhCcEeEEEEeecccC----------cCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEE
Confidence 000112379999999999 8999999999999999865 3578999999999
Q ss_pred EecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 253 IGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 253 ~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
+.++++|+++++||.+|+|++||.|++...+ ...+|..|... ..++++|.|||++++. | .++++.||+|+
T Consensus 317 ~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~Gdtl~ 390 (691)
T 1dar_A 317 MADPYVGRLTFIRVYSGTLTSGSYVYNTTKG--RKERVARLLRMHANHREEVEELKAGDLGAVV--G--LKETITGDTLV 390 (691)
T ss_dssp EEETTTEEEEEEEEEESEEESSCEEEETTTT--EEEECCEEEEECSSCEEEESEEETTCEEEEE--C--CSSCCTTCEEE
T ss_pred EEcCCCCcEEEEEEeeeeEecCCEEEecCCC--cEEEEceEEEEeCCCceEcceecCCCEEEEe--C--cccCccCCEEe
Confidence 9999999999999999999999999987654 44678888664 4689999999999885 4 45678999999
Q ss_pred cCCC
Q psy3124 329 KADT 332 (463)
Q Consensus 329 ~~~~ 332 (463)
+.+.
T Consensus 391 ~~~~ 394 (691)
T 1dar_A 391 GEDA 394 (691)
T ss_dssp ETTC
T ss_pred cCCC
Confidence 8653
No 27
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.9e-33 Score=302.15 Aligned_cols=267 Identities=22% Similarity=0.258 Sum_probs=219.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH---hcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA---KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
...+|+++||+|||||||+++|++... ..|.. ......+|..+.|+.+|+|+......+.+.+..++|+|||||.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 478999999999999999999985432 22322 11234678889999999999888888888899999999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH---------
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLT--------- 191 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~--------- 191 (463)
|...+..+++.+|++++|+|+.+|+..|+++++..+...++| +++|+||+|+. . ..+++.+++.+.+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~-~~~~~~~~l~~~l~~~~~~~~Pi 163 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-G-DYYALLEDLRSTLGPILPIDLPL 163 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-C-CHHHHHHHHHHHHCSEEECEEEE
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-h-hHHHHHHHHHHHhCCcceEEeee
Confidence 999999999999999999999999999999999999999999 77899999997 2 23333444444332
Q ss_pred --------------------------------------------------------------HcC--------------C
Q psy3124 192 --------------------------------------------------------------AYG--------------Y 195 (463)
Q Consensus 192 --------------------------------------------------------------~~g--------------~ 195 (463)
... .
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~ 243 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 243 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 000 0
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCCC-CCCCceeeeEEEEecCCCceEEEEEEecccccCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRD-ITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~~-~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~g 274 (463)
....+|++++||+++ .|+++|+++|..++|+|... .+.||.+.|++++.++++|++++|||.+|+|++|
T Consensus 244 ~~~~~pv~~~SA~~~----------~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g 313 (665)
T 2dy1_A 244 RGLLYPVALASGERE----------IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPG 313 (665)
T ss_dssp TTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTT
T ss_pred hCCeeEEEEeecccC----------cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecC
Confidence 112379999999999 99999999999999988754 6889999999999999999999999999999999
Q ss_pred CEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCCC
Q psy3124 275 DEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 275 d~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
|.|.+.+ ...+|.+|... ..++++|.|||++++. + .+++++||+|++.+.
T Consensus 314 ~~v~~~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--g--l~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 314 DSLQSEA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--K--AEGLHRGMVLWQGEK 367 (665)
T ss_dssp EEEBCTT----SCEEESSEEEEETTEEEEESCEETTCEEEES--S--CTTCCTTCEEESSSC
T ss_pred CEEEcCC----CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--C--CccCccCCEEecCCC
Confidence 9998765 34688888764 4689999999999884 3 457899999997653
No 28
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.9e-33 Score=298.97 Aligned_cols=270 Identities=25% Similarity=0.341 Sum_probs=204.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhh---HhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVA---AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
...++|+++||+|+|||||+++|+... ...|.... ....+|..+.|+++|+|+......+.+.+..++|||||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~-~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE-GASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccC-CceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 347999999999999999999997432 11111110 12367888999999999998888888889999999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc------
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY------ 193 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~------ 193 (463)
+|...+.++++.+|++|+|+|+.++...++..++..+...++| +++|+||+|+...+ +..+.+++++.+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-~~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-FEYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-HHHHHHHHHHHHCCCEEESEE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccc-hHHHHHHHHHHhCCCceeEEe
Confidence 9999999999999999999999999999999999999999999 78999999998532 233334444433210
Q ss_pred --------------------------C-----------------------------------------------------
Q psy3124 194 --------------------------G----------------------------------------------------- 194 (463)
Q Consensus 194 --------------------------g----------------------------------------------------- 194 (463)
+
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l 244 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAI 244 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHH
Confidence 0
Q ss_pred ----CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC--------------------CCCCCceeeeE
Q psy3124 195 ----YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR--------------------DITSPFILPID 250 (463)
Q Consensus 195 ----~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~--------------------~~~~p~~~~I~ 250 (463)
.....+|++++||+++ .|++.||+++..++|+|.. +.+.||.+.|+
T Consensus 245 ~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~Vf 314 (693)
T 2xex_A 245 RQATTNVEFYPVLCGTAFKN----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314 (693)
T ss_dssp HHHHHTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEE
T ss_pred HHHHHhCCeeeEEEeecccC----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEE
Confidence 0012368999999998 8999999999999999854 25789999999
Q ss_pred EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceE
Q psy3124 251 NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGML 326 (463)
Q Consensus 251 ~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 326 (463)
+++.++++|.+.++||.||+|++||.|++...+ .+.+|.+|... ..++++|.|||++++. | .++++.||+
T Consensus 315 K~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~GdT 388 (693)
T 2xex_A 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKG--KRERVGRLLQMHANSRQEIDTVYSGDIAAAV--G--LKDTGTGDT 388 (693)
T ss_dssp EEEEETTTEEEEEEEEEESEEETTEEEEETTTT--EEEEECCEEEECSSCEEECSEEETTCEEEEE--S--CSSCCTTCE
T ss_pred EeeecCCCceEEEEEEEeeeEecCCEEEecCCC--ceEEeceEEEEeCCCceEccccCcCCEEEEe--C--cccCccCCE
Confidence 999999999999999999999999999987544 45688888665 3689999999999985 4 457889999
Q ss_pred EecCC
Q psy3124 327 LAKAD 331 (463)
Q Consensus 327 l~~~~ 331 (463)
|++.+
T Consensus 389 l~~~~ 393 (693)
T 2xex_A 389 LCGEK 393 (693)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 99865
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=2.9e-33 Score=295.67 Aligned_cols=258 Identities=25% Similarity=0.281 Sum_probs=197.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe------------------c
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS------------------T 105 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~------------------~ 105 (463)
..++|+++||+|||||||+++|++...... ..+|+|.++....+. .
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~----------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR----------------EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc----------------cCCceecccCeEEEeechhhhhcccccccccccc
Confidence 357899999999999999999976422110 012344333222221 1
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH---------
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR--------- 176 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~--------- 176 (463)
....++|+|||||++|...+.++++.+|++|||+|+++|+++||.+++..+...++| +++|+||||+.+.
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~ 146 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPF 146 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCch
Confidence 123599999999999998888889999999999999999999999999999999999 8899999999631
Q ss_pred ------------HHHHHHHHHHHHHHHHcCCC----------CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 177 ------------EIMELVELEVRDVLTAYGYD----------GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 177 ------------~~~~~i~~~i~~~l~~~g~~----------~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.+.+...++.+.|...++. ...+|++++||+++ .|+++|+++|...+
T Consensus 147 ~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG----------~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG----------EGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC----------CCchhHHHHHHhhc
Confidence 12233333455555555553 23469999999999 99999999998755
Q ss_pred CCCC-----CCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeec------------c
Q psy3124 235 PNPV-----RDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVF------------Q 297 (463)
Q Consensus 235 ~~p~-----~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~------------~ 297 (463)
|.+. .+.+.|+++.|++++.+++.|++++|+|.+|+|++||.|.+.+.+....++|++|... .
T Consensus 217 ~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~ 296 (594)
T 1g7s_A 217 QQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKF 296 (594)
T ss_dssp HHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSE
T ss_pred cccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCc
Confidence 4321 2457899999999999999999999999999999999999998776567799999764 3
Q ss_pred ccceEEc--cCCeEEEEeccccccCcccceEEecCCC
Q psy3124 298 KKVSEAR--AGDNVGVLLRNVKLKQIERGMLLAKADT 332 (463)
Q Consensus 298 ~~v~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 332 (463)
.++++|. +|+.+++ . +..++..||+|+..++
T Consensus 297 ~~v~ea~~~aG~~v~~--~--~l~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 297 QKVDEVVAAAGIKIVA--P--GIDDVMAGSPLRVVTD 329 (594)
T ss_dssp EECSEEESSEEEEEEC--S--SCTTBCTTCEEEECSS
T ss_pred eEccEEcCCCCcEEEE--c--ccCCCCCCCEEEecCC
Confidence 5788888 6665443 3 4467799999987653
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=4.4e-34 Score=294.93 Aligned_cols=249 Identities=28% Similarity=0.292 Sum_probs=198.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++||+|||||||+++|.+..... ...+|+|++.....+.+++..++|+|||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~----------------~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS----------------GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB----------------TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc----------------ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 45789999999999999999997642211 12357888877777788888999999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC----CC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG----DN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~----~~ 199 (463)
.+.+++..+|++|||+|+++|.++||.+|+..+...++| +|+++||||+.+.+. +. +...+...++.. ..
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~-~~----v~~~l~~~~~~~~~~~~~ 140 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP-DR----VKNELSQYGILPEEWGGE 140 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC-CC----TTCCCCCCCCCTTCCSSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH-HH----HHHHHHHhhhhHHHhCCC
Confidence 999999999999999999999999999999999999999 899999999974321 11 111111112111 23
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC--CCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI--PNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l--~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
+|++++||+++ .|+++|+++|.... ..+..+.+.|+..+|++++.++++|++++|+|.+|+|++||.+
T Consensus 141 ~~~v~vSAktG----------~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v 210 (501)
T 1zo1_I 141 SQFVHVSAKAG----------TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIV 210 (501)
T ss_dssp CEEEECCTTTC----------TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEE
T ss_pred ccEEEEeeeec----------cCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEE
Confidence 79999999999 89999999987632 3344456788999999999999999999999999999999999
Q ss_pred EEecCCceeeEEEEEEee-ccccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 278 ELLGFNSKFTCTISEIQV-FQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 278 ~i~~~~~~~~~~V~sI~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
.+.+. ..+|++|+. ++.++++|.||+.|.+. |++ .....|++++...
T Consensus 211 ~~g~~----~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 211 LCGFE----YGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEEBS----SCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEccc----eeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 87542 368999986 46799999999998765 443 2247899997544
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=1.1e-34 Score=301.94 Aligned_cols=250 Identities=27% Similarity=0.298 Sum_probs=199.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChhhhHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~f~~ 123 (463)
.++|+++||+|||||||+++|++...... ...|+|.+.....+.+ .+..++|||||||++|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~----------------~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM----------------EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS----------------SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc----------------cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH
Confidence 46799999999999999999986533221 2346777665555555 466899999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC----CCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD----GDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~----~~~ 199 (463)
.+.+++..+|++|||+|+++|.++||.+|+..+...++| +|+|+||+|+.+.+. +.+..++ ..++.. ...
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~-~~v~~~l----~~~~~~~e~~~~~ 141 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP-EKVKKEL----LAYDVVCEDYGGD 141 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC-CSSSSHH----HHTTSCCCCSSSS
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch-HHHHHHH----HhhhhhHHhcCCC
Confidence 999999999999999999999999999999999999999 889999999974321 1111122 222211 124
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC--CCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEE
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI--PNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEA 277 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l--~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v 277 (463)
+|++++||+++ .|+++|+++|...+ +.+..+.+.|++++|++++.+++.|++++|+|.+|+|++||.+
T Consensus 142 ~~iv~vSAktG----------~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 142 VQAVHVSALTG----------ENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp EEECCCCSSSS----------CSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred ceEEEEECCCC----------CCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 68999999999 89999999987753 3445567889999999999999999999999999999999987
Q ss_pred EEecCCceeeEEEEEEeecc-ccceEEccCCeEEEEeccccccCcccceEEecCCCc
Q psy3124 278 ELLGFNSKFTCTISEIQVFQ-KKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333 (463)
Q Consensus 278 ~i~~~~~~~~~~V~sI~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 333 (463)
.. +. ...+|++|+.++ .++++|.||+.|++. |++ +...+||+|+.+++.
T Consensus 212 ~~---g~-~~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 212 VA---GK-SWAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CC---SS-CCEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSCCSS
T ss_pred Ee---CC-ceEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEecCCh
Confidence 43 21 347999999885 799999999999874 554 345899999887654
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.97 E-value=6.8e-30 Score=280.84 Aligned_cols=285 Identities=26% Similarity=0.359 Sum_probs=199.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC----------------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN---------------- 106 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---------------- 106 (463)
...+||+++||+|||||||+++|+................+|..+.|+++|+|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4578999999999999999999975421110000111235788899999999997765554443
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc----------H
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD----------R 176 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~----------~ 176 (463)
+..++|||||||.+|...+.++++.+|++|+|+|+.+|...|+..++..+...++| +++|+||+|+.. .
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~ 175 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLY 175 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHH
Confidence 67899999999999999999999999999999999999999999999999899999 779999999873 2
Q ss_pred HHHHHHHHHHHHHHHHcC--------CCCCCCcEEEccchhhccC---------------C------CCC----------
Q psy3124 177 EIMELVELEVRDVLTAYG--------YDGDNTPFVFGSALLALQG---------------D------SSE---------- 217 (463)
Q Consensus 177 ~~~~~i~~~i~~~l~~~g--------~~~~~~pvi~~Sa~~~~~~---------------~------~~~---------- 217 (463)
..++.+.++++..+..+. +.+...++.+.|++.++.. + ..|
T Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~ 255 (842)
T 1n0u_A 176 QTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTK 255 (842)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTT
T ss_pred HHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCC
Confidence 234555666666665421 3322345777888654210 0 001
Q ss_pred --C-------CC-------------------------------------cc------------------------HHHHH
Q psy3124 218 --L-------GE-------------------------------------PS------------------------IHRLL 227 (463)
Q Consensus 218 --~-------~~-------------------------------------~~------------------------i~~Ll 227 (463)
. .. .. ++.||
T Consensus 256 ~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LL 335 (842)
T 1n0u_A 256 KWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALL 335 (842)
T ss_dssp EEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHH
T ss_pred eEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHH
Confidence 0 00 00 37889
Q ss_pred HHhhhcCCCCCC-------------------------CCCCCceeeeEEEEecCCCce-EEEEEEecccccCCCEEEEec
Q psy3124 228 DALDKHIPNPVR-------------------------DITSPFILPIDNAIGVPGRGS-VCIGTIKQGTIKRNDEAELLG 281 (463)
Q Consensus 228 ~~L~~~l~~p~~-------------------------~~~~p~~~~I~~~~~~~~~G~-vv~G~v~~G~l~~gd~v~i~~ 281 (463)
+++..++|+|.. +.++||.+.|++++..+..|. +.++||.||+|+.||.|.+++
T Consensus 336 d~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~ 415 (842)
T 1n0u_A 336 EMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQG 415 (842)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEEC
T ss_pred HHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecc
Confidence 999999999851 457899999999999999996 999999999999999998864
Q ss_pred CC----cee---eEEEEEEeec----cccceEEccCCeEEEEeccccccCcccceEEecCC
Q psy3124 282 FN----SKF---TCTISEIQVF----QKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331 (463)
Q Consensus 282 ~~----~~~---~~~V~sI~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 331 (463)
.+ ... ..+|..|... ..++++|.|||++++. |++...+..| +||+.+
T Consensus 416 ~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl~~~~ 473 (842)
T 1n0u_A 416 PNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TLTTSE 473 (842)
T ss_dssp TTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EEESCT
T ss_pred ccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-eecCCC
Confidence 32 111 4788888776 3689999999998874 4433222444 898754
No 33
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=3e-21 Score=179.45 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=124.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe-cCCeeEEEEeCCCh---
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS-TNTRHYAHTDCPGH--- 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDtPGh--- 118 (463)
...++|+++|+.|+|||||+++|++... ........|.|.+.....+. ..+..+.|+||||+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKR--------------LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSS--------------SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCc--------------ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 3478999999999999999999976410 00111223455555555554 56788999999995
Q ss_pred -------hh---hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 119 -------AD---YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 119 -------~~---f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
+. +....+.....+|++++|+|+.++......+.+..+...++| +++|+||+|+.+........+++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~ 171 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQK 171 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHH
Confidence 22 334445555668999999999998888888888888888888 8899999999976665555566666
Q ss_pred HHHHc---CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCCC
Q psy3124 189 VLTAY---GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVR 239 (463)
Q Consensus 189 ~l~~~---g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~~ 239 (463)
.+..+ +. ....|++++||+++ .|+++|++.|.+.++.+..
T Consensus 172 ~l~~~~~~~~-~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 172 SLDAYRDAGY-AGKLTVQLFSALKR----------TGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHHTC-CSCEEEEEEBTTTT----------BSHHHHHHHHHHHHC----
T ss_pred HHHhhhhccc-CCCCeEEEeecCCC----------cCHHHHHHHHHHhcCccCC
Confidence 66553 11 13478999999999 9999999999987776544
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.1e-19 Score=177.87 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=121.8
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCCh
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGH 118 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh 118 (463)
++..+.-.|+++|++|+|||||+++|++.... ......+.|.+.....+... +..++|+||||+
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~---------------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS---------------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc---------------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 34556789999999999999999999864111 01112244444444445566 889999999998
Q ss_pred hh----------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHH-HHHHHHcCCCeEEEEEeccCcc-cHHHHHHHHHHH
Q psy3124 119 AD----------YIKNMISGASQMDGAIVVVAASEGQMPQTREH-LLLSKQIGIDNVVVYVNKADLV-DREIMELVELEV 186 (463)
Q Consensus 119 ~~----------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~-l~~~~~l~ip~iivvvNKiD~~-~~~~~~~i~~~i 186 (463)
.+ +...+..++..+|++++|+|++++...++.+. +..+...++| +++|+||+|+. +........+++
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l 148 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEI 148 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHH
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHH
Confidence 43 44666778889999999999999988888887 7777778888 88999999998 554444333333
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.+ .++ ...+++++||+++ .|+++|++.|...++.
T Consensus 149 ~~---~~~---~~~~i~~vSA~~g----------~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 149 HK---KHP---ELTEIVPISALKG----------ANLDELVKTILKYLPE 182 (308)
T ss_dssp HH---HCT---TCCCEEECBTTTT----------BSHHHHHHHHHHHSCB
T ss_pred HH---hcc---CCCeEEEEeCCCC----------CCHHHHHHHHHHhCcc
Confidence 33 332 2367999999999 9999999999987764
No 35
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=2.4e-19 Score=162.39 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=117.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC-----
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG----- 117 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 117 (463)
...++|+++|+.|+|||||+++|++.... ......+.|....... .+..+.++||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA---------------FVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS---------------CCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc---------------cccCCCCCccCeEEEE---ECCcEEEEECCCCcccc
Confidence 34689999999999999999999764210 0011123333322222 234688999999
Q ss_pred -----hhhhH---HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 118 -----HADYI---KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 118 -----h~~f~---~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
++.|. .........+|++++|+|+..+......+.+..+...++| +++|+||+|+.++...+...+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~ 161 (195)
T 3pqc_A 83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAKKLEEHRKV 161 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHHHHHHHHHHHH
Confidence 44444 3444555667999999999988887777778888888988 88999999998665556666777777
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+...+ .++++++||+++ .|+++++++|.+.++
T Consensus 162 ~~~~~----~~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 162 FSKYG----EYTIIPTSSVTG----------EGISELLDLISTLLK 193 (195)
T ss_dssp HHSSC----CSCEEECCTTTC----------TTHHHHHHHHHHHHC
T ss_pred HhhcC----CCceEEEecCCC----------CCHHHHHHHHHHHhh
Confidence 76543 378999999999 999999999987543
No 36
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=2.9e-19 Score=174.18 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=113.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh---
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD--- 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~--- 120 (463)
...+|+++|++|+|||||+++|++..... .. ...+.|.+.....+...+..++|+||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i----------vs-----~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP----------IS-----PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC----------CC-----SSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee----------ec-----CCCCceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 45689999999999999999998641110 00 0112222222223445678999999999876
Q ss_pred -----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 121 -----YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 121 -----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
|......++..+|++++|+|++++...++...+..+... ++| +++|+||+|+.+... + +.+. ++.+
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~-~-~~~~----~~~~ 143 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPE-E-AMKA----YHEL 143 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHH-H-HHHH----HHHT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchH-H-HHHH----HHHh
Confidence 566677888999999999999998877776666677766 788 889999999985433 0 2222 2222
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
. ...+++++||+++ .++++|++.|...+|.
T Consensus 144 -~--~~~~~~~iSA~~g----------~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 144 -L--PEAEPRMLSALDE----------RQVAELKADLLALMPE 173 (301)
T ss_dssp -S--TTSEEEECCTTCH----------HHHHHHHHHHHTTCCB
T ss_pred -c--CcCcEEEEeCCCC----------CCHHHHHHHHHHhccc
Confidence 1 2357999999999 9999999999886653
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=9e-20 Score=187.09 Aligned_cols=147 Identities=24% Similarity=0.331 Sum_probs=108.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh-----
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH----- 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh----- 118 (463)
..++|+++|++|+|||||+++|++.. ....+...|+|.+.....+..++..+.|+||||+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEE---------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 238 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST---------------TEEEC---------CCEEEEETTEEEEETTHHHHTCBTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCC---------------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCcc
Confidence 46899999999999999999998641 1112234577887777778888889999999998
Q ss_pred -----hhhHHH-HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH--HHHHHHHHHHHHH
Q psy3124 119 -----ADYIKN-MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE--IMELVELEVRDVL 190 (463)
Q Consensus 119 -----~~f~~~-~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~--~~~~i~~~i~~~l 190 (463)
+.|... +..++..+|++++|+|++++...|+.+++..+...+.| +++|+||+|+.+.. ..+++.+++.+.+
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 555433 34677889999999999999999999888888888887 89999999998432 2445555665555
Q ss_pred HHcCCCCCCCcEEEccchhh
Q psy3124 191 TAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~ 210 (463)
.... .+|++++||+++
T Consensus 318 ~~~~----~~~~~~~SA~tg 333 (436)
T 2hjg_A 318 QFLD----YAPILFMSALTK 333 (436)
T ss_dssp GGGT----TSCEEECCTTTC
T ss_pred ccCC----CCCEEEEecccC
Confidence 4432 479999999999
No 38
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.81 E-value=2.8e-19 Score=156.73 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh-----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD----- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~----- 120 (463)
.+|+++|+.|+|||||+++|.+... ...+...+.|.+.....+...+..+.++||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS---------------AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe---------------eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 6899999999999999999975411 01112234555555556666788999999999887
Q ss_pred --hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 121 --YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 121 --f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
+...+...+..+|++++|+|++++......+....+...++| +++|+||+|+.+.. +++.++. .+++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~------~~~~~~~-~~~~--- 135 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHE------LYLGPLY-GLGF--- 135 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGG------GGCGGGG-GGSS---
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccch------HhHHHHH-hCCC---
Confidence 455566778899999999999988777666666777777888 88999999998542 1222222 3332
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+++++||+++ .|++++++.|.+.+|
T Consensus 136 -~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 -GDPIPTSSEHA----------RGLEELLEAIWERLP 161 (161)
T ss_dssp -CSCEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred -CCeEEEecccC----------CChHHHHHHHHHhCc
Confidence 37899999999 999999999987654
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=5.6e-20 Score=164.20 Aligned_cols=159 Identities=32% Similarity=0.384 Sum_probs=116.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|+.++|||||+++|++...... ...+++.+.....+..++..+.++||||+++|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ----------------EAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS----------------SCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC----------------CCCceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 3568999999999999999999976411110 111233333333455577889999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC----C
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG----D 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~----~ 198 (463)
..+...+..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+... + ++...+...+.-. .
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~ 143 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEANP-D----RVMQELMEYNLVPEEWGG 143 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH-H----HHHHHHTTTTCCBTTTTS
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH-H----HHHHHHHhcCcChhHcCC
Confidence 7777788899999999999998888999988888778888 889999999985321 1 2222233222211 1
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.++++++||+++ .+++++++.|...
T Consensus 144 ~~~~~~~Sa~~~----------~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 144 DTIFCKLSAKTK----------EGLDHLLEMILLV 168 (178)
T ss_dssp SEEEEECCSSSS----------HHHHHHHHHHHHH
T ss_pred cccEEEEecCCC----------CCHHHHHHHHHHh
Confidence 268999999999 9999999988764
No 40
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.80 E-value=4.9e-19 Score=160.68 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=111.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC-----
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG----- 117 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 117 (463)
...++|+++|++|+|||||+++|++.... .......|.|.+.....+ +..+.++||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAK 83 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEEE---CCcEEEEECCCCCccc
Confidence 35789999999999999999999764110 001112233433333323 34699999999
Q ss_pred -----hhhhHHHHHhhcc---cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 118 -----HADYIKNMISGAS---QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 118 -----h~~f~~~~~~~~~---~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
++.|...+...+. .+|++++|+|++++...+..+.+..+...++| +++|+||+|+.+....+...+++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHHHHHHHHHHHH
Confidence 6666554444444 44999999999998877777777777778888 88999999998665455445555554
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.. ....+++++||+++ .+++++++.|.+.+
T Consensus 163 ~~~----~~~~~~~~~Sa~~~----------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 163 LNI----DPEDELILFSSETK----------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HTC----CTTSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred Hcc----cCCCceEEEEccCC----------CCHHHHHHHHHHHh
Confidence 432 12478999999999 99999999987644
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.80 E-value=2.9e-19 Score=159.96 Aligned_cols=163 Identities=16% Similarity=0.188 Sum_probs=112.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....++|+++|+.++|||||+++|++..... ..+...+.+.......+......+.|+||||+++|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVE--------------FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTT--------------TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCC--------------cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 3457899999999999999999997541110 00111233333333334334567899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
...+...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+.... ..+++.++.+..+
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--- 148 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKV--TAEDAQTYAQENG--- 148 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS--CHHHHHHHHHHTT---
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccC--CHHHHHHHHHHcC---
Confidence 8888888899999999999987543 3334444444443 555 8899999999743211 1234445555544
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+|++++||+++ .++++++++|...++.
T Consensus 149 --~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 --LFFMETSAKTA----------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp --CEEEECCSSSC----------TTHHHHHHHHHHTCC-
T ss_pred --CEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 68999999999 9999999999886654
No 42
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.79 E-value=5e-19 Score=156.33 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=111.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
.+.++|+++|+.++|||||+++|++.... ...+...+.+.......+......+.++||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFH--------------EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 35689999999999999999999753110 0011222444444444444446688999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++++|+|+++... ....+.+..+... ++| +++|.||+|+.++.... .+++.++....+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---- 142 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD--FQEAQSYADDNS---- 142 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC--HHHHHHHHHHTT----
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccC--HHHHHHHHHHcC----
Confidence 888888899999999999987542 2233333444333 455 78889999997432111 123444444443
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .++++++++|.+.++
T Consensus 143 -~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 -LLFMETSAKTS----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHHTSC
T ss_pred -CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 68999999999 999999999988654
No 43
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=2.2e-19 Score=172.87 Aligned_cols=156 Identities=23% Similarity=0.303 Sum_probs=114.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+.++|+++|++|+|||||+++|++..... ....|+|++.....+...+..+.++||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v----------------~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV----------------GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEE----------------EECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCccc----------------CCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 35899999999999999999998752111 12237777777777888888999999999887641
Q ss_pred ---------H---HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 124 ---------N---MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 124 ---------~---~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
. .......+|++++|+|+++ .......+..+..+++| +++|+||+|+.+...... .+..+.+
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~~~---~~~~l~~ 139 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQNIRI---EIDALSA 139 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHTTEEE---CHHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhhhHHH---HHHHHHH
Confidence 1 1112368999999999987 34445555667778999 889999999974322111 1222223
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.+| +|++++||+++ .|+++|+++|...++.
T Consensus 140 ~lg-----~~~i~~SA~~g----------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 140 RLG-----CPVIPLVSTRG----------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHT-----SCEEECCCGGG----------HHHHHHHHHHHTCCCC
T ss_pred hcC-----CCEEEEEcCCC----------CCHHHHHHHHHHHHhc
Confidence 333 68999999999 9999999999986654
No 44
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=7.8e-19 Score=159.42 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=114.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
.+.++|+++|+.++|||||+++|++.... .......|.+.......+......+.|+||||+++|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 34689999999999999999999764110 0011122455554445555566789999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~---- 159 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV--PLKDAKEYAESIG---- 159 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS--CHHHHHHHHHTTT----
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc--CHHHHHHHHHHcC----
Confidence 888888899999999999987543 2233344444443 566 8899999999742211 1234455555443
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+|++++||+++ .+++++++.|.+.++.
T Consensus 160 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 160 -AIVVETSAKNA----------INIEELFQGISRQIPP 186 (192)
T ss_dssp -CEEEECBTTTT----------BSHHHHHHHHHHTCC-
T ss_pred -CEEEEEeCCCC----------cCHHHHHHHHHHHHHh
Confidence 68999999999 9999999999886654
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.78 E-value=9.6e-19 Score=156.00 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=108.9
Q ss_pred ccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCC
Q psy3124 39 SKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCP 116 (463)
Q Consensus 39 ~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtP 116 (463)
+....+..+|+++|+.++|||||+++|++.... .+....++.+.....+..++ ..+.++|||
T Consensus 8 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~ 71 (179)
T 2y8e_A 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71 (179)
T ss_dssp ----CEEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCCSEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCCcceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeEEEEEEEEECCeEEEEEEEECC
Confidence 334456789999999999999999999753111 11122333343333343444 578999999
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
|+++|...+...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.++.... .++...+.+.
T Consensus 72 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~ 148 (179)
T 2y8e_A 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS--TEEGERKAKE 148 (179)
T ss_dssp CSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSC--HHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCC--HHHHHHHHHH
Confidence 999998877778889999999999987432 222233333322 3566 88999999997432111 1233344444
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+ +|++++||+++ .+++++++.|...++
T Consensus 149 ~~-----~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 149 LN-----VMFIETSAKAG----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HT-----CEEEEEBTTTT----------BSHHHHHHHHHHTCC
T ss_pred cC-----CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 43 68999999999 999999999988654
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.78 E-value=8.8e-19 Score=156.34 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChhhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHADY 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~f 121 (463)
++..+|+++|++++|||||+++|++.... .......|.........+.. ....+.++||||+++|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG--------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG 69 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT--------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC--------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc
Confidence 45789999999999999999999764210 00111122223222233321 1268999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
...+...+..+|++++|+|+++.... .....+..+.. .+.|++++|+||+|+.+..... .+++.++.+..+
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~- 146 (178)
T 2hxs_A 70 GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK--PEKHLRFCQENG- 146 (178)
T ss_dssp CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC--HHHHHHHHHHHT-
T ss_pred cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC--HHHHHHHHHHcC-
Confidence 87777888999999999999875332 22233333333 2677788999999997432110 123344444444
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+|++++||+++ .+++++++.|...+.
T Consensus 147 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 147 ----FSSHFVSAKTG----------DSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHHHT
T ss_pred ----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999999 999999999987554
No 47
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=3.8e-19 Score=169.36 Aligned_cols=151 Identities=22% Similarity=0.232 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH-
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN- 124 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~- 124 (463)
++|+++|++|+|||||+++|++.....+ ...|+|++.....+...+..+.++||||+.++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~----------------~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG----------------NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE----------------ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc----------------CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 5799999999999999999987522111 12377777777778878889999999999877531
Q ss_pred ---------HHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 125 ---------MISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 125 ---------~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
....+ ..+|++++|+|++. ..........+..+++| +++|+||+|+.+........+.+. +.+
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~~~~~l~---~~l 139 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGISIDTEKLE---SLL 139 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTCEECHHHHH---HHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCcHHHHHHHH---HHc
Confidence 22233 67999999999987 33344455566677888 889999999974432211122222 233
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
| +|++++||+++ .|+++|++.|...
T Consensus 140 g-----~~vi~~SA~~g----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 G-----CSVIPIQAHKN----------IGIPALQQSLLHC 164 (256)
T ss_dssp C-----SCEEECBGGGT----------BSHHHHHHHHHTC
T ss_pred C-----CCEEEEECCCC----------CCHHHHHHHHHhh
Confidence 3 68999999999 9999999999885
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.78 E-value=1.8e-18 Score=157.27 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=111.1
Q ss_pred cccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 38 SSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 38 ~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
...+.....+|+++|+.++|||||+++|++...... + ...|+......++.....+.|+||||
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------~-------~~~t~~~~~~~~~~~~~~~~i~Dt~G 72 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------H-------ITATVGYNVETFEKGRVAFTVFDMGG 72 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC--------------C-------CCCCSSEEEEEEEETTEEEEEEEECC
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------c-------cccccceeEEEEEeCCEEEEEEECCC
Confidence 334556789999999999999999999975421110 0 00111122234456788999999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc-----------CCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI-----------GIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l-----------~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
+++|...+...+..+|++|+|+|+++... ....+.+..+... ++| +++|+||+|+.+....+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~ 151 (199)
T 4bas_A 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKTAAELVEI 151 (199)
T ss_dssp SGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCCHHHHHHH
T ss_pred CHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCCHHHHHHH
Confidence 99998888888999999999999998653 3333444444333 777 8899999999854333333333
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.... . .....++++++||+++ .+++++++.|...+
T Consensus 152 ~~~~~--~-~~~~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 152 LDLTT--L-MGDHPFVIFASNGLKG----------TGVHEGFSWLQETA 187 (199)
T ss_dssp HTHHH--H-HTTSCEEEEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred hcchh--h-ccCCeeEEEEeeCCCc----------cCHHHHHHHHHHHH
Confidence 22111 0 0113478999999999 99999999987754
No 49
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=7e-19 Score=155.79 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=107.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|+.++|||||+++|.+.... .. ..|+......+...+..+.++||||+++|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV------------TT-------IPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC------------CC-------CCCSSEEEEEEEETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------------Cc-------CCcCccceEEEEECCEEEEEEECCCChhhhH
Confidence 4689999999999999999999653110 00 1111122233445688999999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+++.+ .+........
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~ 141 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTSSEMAN----SLGLPALKDR 141 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHH----HHTGGGCTTS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCHHHHHH----HhCchhccCC
Confidence 88888899999999999987643 333333333322 3666 899999999985422222222 2221112223
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.++++++||+++ .++++++++|.+.+
T Consensus 142 ~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 167 (171)
T 1upt_A 142 KWQIFKTSATKG----------TGLDEAMEWLVETL 167 (171)
T ss_dssp CEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ceEEEECcCCCC----------cCHHHHHHHHHHHH
Confidence 468999999999 99999999987744
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.78 E-value=1.7e-18 Score=153.09 Aligned_cols=160 Identities=20% Similarity=0.202 Sum_probs=111.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+.++|+++|+.++|||||+++|.+.... .......|.+.......+......+.++||||+++|..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFD--------------PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc
Confidence 4689999999999999999999764110 00112234444444445544457889999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.+...+..+|++++|+|+++....+. ...+..+... .+| +++|.||+|+.+.... ..++...+.+..+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~----- 142 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREV--MERDAKDYADSIH----- 142 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCS--CHHHHHHHHHHTT-----
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCcccccccc--CHHHHHHHHHHcC-----
Confidence 77788899999999999987543222 3333444443 344 8889999999753211 1123344444443
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .+++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~~----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 AIFVETSAKNA----------ININELFIEISRRIP 168 (170)
T ss_dssp CEEEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCC----------cCHHHHHHHHHHHHh
Confidence 68999999999 999999999987654
No 51
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.77 E-value=6.8e-19 Score=159.63 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=110.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEE-----EEecCCeeEEEEeC
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV-----EYSTNTRHYAHTDC 115 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~-----~~~~~~~~i~liDt 115 (463)
.....++|+++|++++|||||++.|.+.......... .........|+..... .+......+.++||
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEM--------VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCC--------EEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccc--------cccccccccceeeeecccccccccCCceEEEEEeC
Confidence 3445789999999999999999877654221100000 0000001123322211 22233457899999
Q ss_pred CChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH---------cCCCeEEEEEeccCcccHHHHHHHHHHH
Q psy3124 116 PGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ---------IGIDNVVVYVNKADLVDREIMELVELEV 186 (463)
Q Consensus 116 PGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~---------l~ip~iivvvNKiD~~~~~~~~~i~~~i 186 (463)
||+++|.......+..+|++|+|+|++++...+..+.+..+.. .++| +++|+||+|+.+... .+++
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~----~~~~ 156 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDALP----VEMV 156 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCCC----HHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcccccC----HHHH
Confidence 9999999888889999999999999997655555544433322 3667 889999999975422 2345
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.++++..++ .+++++||+++ .+++++++.|...
T Consensus 157 ~~~~~~~~~----~~~~~~Sa~~~----------~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 157 RAVVDPEGK----FPVLEAVATEG----------KGVFETLKEVSRL 189 (198)
T ss_dssp HHHHCTTCC----SCEEECBGGGT----------BTHHHHHHHHHHH
T ss_pred HHHHHhcCC----ceEEEEecCCC----------cCHHHHHHHHHHH
Confidence 555554442 38999999999 9999999988764
No 52
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.77 E-value=1.9e-18 Score=156.36 Aligned_cols=161 Identities=16% Similarity=0.071 Sum_probs=110.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.++.++|+++|+.++|||||+++|++..... +. ..|+......+...+..+.++||||+++|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE----------------DM--IPTVGFNMRKITKGNVTIKLWDIGGQPRF 80 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------SC--CCCCSEEEEEEEETTEEEEEEEECCSHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC----------------cc--CCCCceeEEEEEeCCEEEEEEECCCCHhH
Confidence 4567999999999999999999997541110 00 11222222335567889999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
...+...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+....+++ .+.+......
T Consensus 81 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~----~~~~~~~~~~ 155 (188)
T 1zd9_A 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDEKEL----IEKMNLSAIQ 155 (188)
T ss_dssp HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCHHHH----HHHTTGGGCC
T ss_pred HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCHHHH----HHHhChhhhc
Confidence 8888888899999999999987532 333334333322 4677 8899999999743221222 2222111122
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
...++++++||+++ .|+++++++|...+.
T Consensus 156 ~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 156 DREICCYSISCKEK----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHTCC
T ss_pred cCCeeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 23478999999999 999999999988654
No 53
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=160.60 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=106.3
Q ss_pred ccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh
Q psy3124 39 SKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 39 ~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh 118 (463)
....+..++|+++|+.++|||||+++|++.... .......|.+.......+......+.|+||||+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 87 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--------------ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCCccceeEEEEEEECCEEEEEEEEECCCC
Confidence 334456799999999999999999999754110 001111233333333444444467899999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHH---HH-HHHHHHHHH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIM---EL-VELEVRDVL 190 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~---~~-i~~~i~~~l 190 (463)
++|...+...+..+|++|+|+|++++...+. .+.+..+.. .++| +++|+||+|+.+.... .. ..++..++.
T Consensus 88 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~ 166 (199)
T 2p5s_A 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLA 166 (199)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHH
T ss_pred cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHH
Confidence 9999888888999999999999987543222 233333333 3677 8899999999743211 00 122334444
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+..+ +|++++||+++ .+++++++.|...+
T Consensus 167 ~~~~-----~~~~~~SA~~g----------~gv~el~~~l~~~i 195 (199)
T 2p5s_A 167 MTYG-----ALFCETSAKDG----------SNIVEAVLHLAREV 195 (199)
T ss_dssp HHHT-----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHcC-----CeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 4444 58999999999 99999999987644
No 54
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=8.6e-19 Score=180.82 Aligned_cols=161 Identities=25% Similarity=0.328 Sum_probs=121.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC-----
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG----- 117 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 117 (463)
....+|+++|++++|||||+++|++.. ....+...|+|.+.....+...+..+.||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE---------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST---------------TEEECC------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC---------------ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 457899999999999999999997531 011122336666665666777888999999999
Q ss_pred -----hhhhHHH-HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc--HHHHHHHHHHHHHH
Q psy3124 118 -----HADYIKN-MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEVRDV 189 (463)
Q Consensus 118 -----h~~f~~~-~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~--~~~~~~i~~~i~~~ 189 (463)
+++|... +..++..+|++|+|+|+.++...++.+++..+...++| +|+|+||+|+.+ ....+++.+.+++.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 5777554 44578899999999999999999999999999999988 889999999984 33445556666665
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+...+ .+|++++||+++ .++++|++.+...
T Consensus 337 ~~~~~----~~~~~~~SA~~g----------~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 337 FQFLD----YAPILFMSALTK----------KRIHTLMPAIIKA 366 (456)
T ss_dssp CGGGT----TSCEEECCTTTC----------TTGGGHHHHHHHH
T ss_pred cccCC----CCCEEEEcCCCC----------cCHHHHHHHHHHH
Confidence 55433 378999999999 7777777777653
No 55
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.1e-18 Score=154.14 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
.+.++|+++|++++|||||+++|++..... .+....++.+.....+..++ ..+.++||||+++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---------------GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---------------CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---------------CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 457899999999999999999997641110 01111223333222333343 4788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|...+...+..+|++++|+|+++....+ ..+.+..+.. .++| +++|+||+|+.++.... .++..++.+..+
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~-- 147 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK--REDGEKLAKEYG-- 147 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC--HHHHHHHHHHHT--
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccC--HHHHHHHHHHcC--
Confidence 9888888899999999999998754322 2333333333 4566 88999999997432110 123334444444
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .++++++++|...+
T Consensus 148 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 ---LPFMETSAKTG----------LNVDLAFTAIAKEL 172 (180)
T ss_dssp ---CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999987754
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=1.3e-18 Score=153.67 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=108.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+.++|+++|+.|+|||||+++|.+..... ......|.+.......+......+.++||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 46899999999999999999997541110 0011123333333344433445789999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeccCcccHHH-HHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ---IGIDNVVVYVNKADLVDREI-MELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~---l~ip~iivvvNKiD~~~~~~-~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++++|+|+++....+ ..+.+..+.. .++| +++|+||+|+.+... .+...++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEKG---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHcC----
Confidence 8888889999999999998753322 2222323322 2566 889999999974310 0011123334444444
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .+++++++.|.+.++
T Consensus 143 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 -LLFFETSAKTG----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 58999999999 999999999987553
No 57
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.77 E-value=2.9e-18 Score=152.88 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=110.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++.... .......+.+.......+......+.++||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh
Confidence 34789999999999999999999764110 0011122344444444444344678999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.++... ..++++++++..+
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---- 151 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV--TYEEAKQFAEENG---- 151 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--CHHHHHHHHHHTT----
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc--CHHHHHHHHHHcC----
Confidence 888888999999999999987543222 222222332 4566 8899999999743211 1234455555544
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .++++++++|.+.
T Consensus 152 -~~~~~~Sa~~~----------~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 152 -LLFLEASAKTG----------ENVEDAFLEAAKK 175 (179)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 68999999999 9999999988764
No 58
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1e-18 Score=157.78 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=106.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+...+|+++|+.++|||||+++|++.... . .. .|+......+..++..+.++||||+++|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------~---------~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------H---------TS----PTIGSNVEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------E---------EE----CCSCSSCEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------c---------Cc----CCCccceEEEEECCEEEEEEECCCCHhHH
Confidence 45789999999999999999999753110 0 00 01111122334467899999999999987
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+ ++.+.+....+..
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~i~~~~~~~~~~~ 149 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVA----EISQFLKLTSIKD 149 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCCHH----HHHHHHTGGGCCS
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCCHH----HHHHHhChhhhcC
Confidence 777777889999999999988643 334444444433 3566 89999999997532222 2333332221222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV 238 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~ 238 (463)
..++++++||+++ .|+++++++|.+.++.+.
T Consensus 150 ~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 150 HQWHIQACCALTG----------EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp SCEEEEECBTTTT----------BTHHHHHHHHHHHHCC--
T ss_pred CCcEEEEccCCCC----------cCHHHHHHHHHHHHHHHh
Confidence 3478999999999 999999999988665543
No 59
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=3.2e-18 Score=150.57 Aligned_cols=156 Identities=18% Similarity=0.106 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNM 125 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~ 125 (463)
++|+++|+.++|||||+++|++.... +. ..|+......+...+..+.++||||+++|...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS------------CC-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC------------cc-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 47999999999999999999754110 00 011112223345567889999999999998888
Q ss_pred HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 126 ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 126 ~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+++. +.+.........+
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~ 136 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNAAEIT----DKLGLHSLRHRNW 136 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHH----HHTTGGGCSSCCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCCHHHHH----HHhCcccccCccE
Confidence 888999999999999987542 222333333322 2566 89999999997532222222 2221111222347
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
|++++||+++ .|+++++++|...+.
T Consensus 137 ~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 137 YIQATCATSG----------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred EEEEcccCCC----------cCHHHHHHHHHHHHh
Confidence 8999999999 999999999987553
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=153.18 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=108.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|++++|||||+++|++.... .+...+++.+.....+...+ ..+.++||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 35689999999999999999999653111 11223444444444444455 6789999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH-c-CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ-I-GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~-l-~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
|...+...+..+|++++|+|++++...+. ...+..+.. . ++| +++|+||+|+.+..... ..+...+....+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~--- 144 (181)
T 3tw8_B 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVE--TEDAYKFAGQMG--- 144 (181)
T ss_dssp CSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSC--HHHHHHHHHHHT---
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccC--HHHHHHHHHHcC---
Confidence 98878888899999999999988533222 222222222 2 355 88999999987432211 123344444444
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|++++++.|...+
T Consensus 145 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 --IQLFETSAKEN----------VNVEEMFNCITELV 169 (181)
T ss_dssp --CCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999987644
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.76 E-value=6e-18 Score=151.88 Aligned_cols=165 Identities=16% Similarity=0.076 Sum_probs=108.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+..++|+++|++|+|||||+++|++...... .. ...+... .....+......+.++||||+++|.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~-----------~~---~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------YI---PTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSS-----------CC---CCSCCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCC-----------cC---Cccccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 3578999999999999999999975411100 00 0001111 1112233333467799999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeccCcccHHH-HHHH---------HHHHHH
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQI--GIDNVVVYVNKADLVDREI-MELV---------ELEVRD 188 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~l--~ip~iivvvNKiD~~~~~~-~~~i---------~~~i~~ 188 (463)
......+..+|++++|+|++++...+.. ..+..+... ++| +++|+||+|+.+... .+.+ .++...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 7777788899999999999875432222 233344433 677 889999999974322 1111 123344
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
+.+..+. .|++++||+++ .|++++++.|...+..+
T Consensus 147 ~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 147 MAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHSCC
T ss_pred HHHhcCC----cEEEEecCCCc----------cCHHHHHHHHHHHHhcc
Confidence 4444442 48999999999 99999999998866544
No 62
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=155.02 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=109.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|+.++|||||+++|++... ..+...+++.+.....+..++ ..+.|+||||+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY----------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC----------------CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC----------------CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3468999999999999999999975311 111222344444444444444 5788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|...+...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+..... ..+...+...++
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~-- 152 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVD--YTTAKEFADSLG-- 152 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC--HHHHHHHHHHTT--
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccC--HHHHHHHHHHcC--
Confidence 98888888899999999999987432 2223333333333 566 88999999997432211 123344444444
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .+++++++.|...+
T Consensus 153 ---~~~~~~Sa~~g----------~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 ---IPFLETSAKNA----------TNVEQSFMTMAAEI 177 (196)
T ss_dssp ---CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CcEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 89999988887644
No 63
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=7.9e-18 Score=152.00 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=107.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee-EEEEecC-----------CeeE
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA-HVEYSTN-----------TRHY 110 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~-----------~~~i 110 (463)
...++|+++|++++|||||+++|++..... +....+..+.. ...+... ...+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNS----------------KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcccccceeeeeEEEEEecCCcccccccCcEEEE
Confidence 346899999999999999999997641110 01111222222 1222222 3579
Q ss_pred EEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 111 AHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 111 ~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
.++||||+++|...+...+..+|++++|+|+++....+. .+.+..+.. .++| +++|+||+|+.+.... ..++
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~ 149 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAV--KEEE 149 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCS--CHHH
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc--CHHH
Confidence 999999999999999999999999999999987543222 333333333 4667 8899999999753211 1133
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.++....+ +|++++||+++ .+++++++.|...+
T Consensus 150 ~~~~~~~~~-----~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYG-----IPYFETSAANG----------TNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHT-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHcC-----CCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 444555544 57999999999 99999999887643
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=2.5e-18 Score=151.14 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=103.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+..+|+++|++|+|||||+++|.+.... ... ....+ +.......+......+.++||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~--~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI------------EKY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC------------SCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc------------ccC--CCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 4689999999999999999999754110 000 00001 11122223333334588999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHH-H---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMP-QTREHLLLS-K---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~-~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.....+..+|++++|+|+.+.... ...+.+..+ . ..++| +++|+||+|+.+..... .++..++.+..+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---- 139 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVS--SSEGRALAEEWG---- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSC--HHHHHHHHHHHT----
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCC--HHHHHHHHHHhC----
Confidence 888888999999999999874321 122222222 2 23677 88999999987432111 123344444444
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+++ .|++++++.|...
T Consensus 140 -~~~~~~Sa~~~----------~gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 -CPFMETSAKSK----------TMVDELFAEIVRQ 163 (167)
T ss_dssp -SCEEEECTTCH----------HHHHHHHHHHHHH
T ss_pred -CCEEEecCCCC----------cCHHHHHHHHHHH
Confidence 57999999999 9999999988763
No 65
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.76 E-value=6.3e-18 Score=152.01 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|+.++|||||+++|++.... .+....++.+.....+..++ ..+.++||||+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK----------------DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 34689999999999999999999754111 11122334444333444444 5788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHH---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSK---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|...+...+..+|++++|+|+++....+. ...+..+. ..++| +++|+||+|+.+..... ..+..++....+
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~-- 146 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVT--FLEASRFAQENE-- 146 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC--HHHHHHHHHHTT--
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC--HHHHHHHHHHcC--
Confidence 99988899999999999999987443222 22222222 23566 89999999997432111 123344444443
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 147 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 147 ---LMFLETSALTG----------ENVEEAFVQCARKI 171 (186)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 89999999887644
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.76 E-value=3.6e-18 Score=155.43 Aligned_cols=107 Identities=19% Similarity=0.133 Sum_probs=78.3
Q ss_pred eeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
..+.|+||||+++|...+...+..+|++++|+|++++...+. .+.+..+.. .+.| +++|+||+|+.... ...++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~---~~~~~ 168 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQ---VDILE 168 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CC---SCHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCccccc---CCHHH
Confidence 679999999999998888888899999999999988643332 233333333 4555 99999999942111 11234
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+.++++..+ +|++++||+++ .++++++++|...
T Consensus 169 ~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~l~~~l~~~ 201 (208)
T 3clv_A 169 VQKYAQDNN-----LLFIQTSAKTG----------TNIKNIFYMLAEE 201 (208)
T ss_dssp HHHHHHHTT-----CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHHHHcC-----CcEEEEecCCC----------CCHHHHHHHHHHH
Confidence 555565544 58999999999 9999999988763
No 67
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.76 E-value=6e-18 Score=148.87 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=102.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+.++|+++|+.|+|||||+++|.+..... +.. ...+.+. .....+......+.++||||+++|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------~~~---~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------DYE---PTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------CCC---TTCCEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC-----------CCC---CCcceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 56899999999999999999997541100 000 0011111 11122333335788999999999998
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++++|+|+++.... ...+.+..+.. .++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---- 140 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV--SVEEAKNRADQWN---- 140 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS--CHHHHHHHHHHHT----
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc--CHHHHHHHHHHcC----
Confidence 888888999999999999874321 12222222222 2667 8899999999743211 1234444555544
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+++ .++++++++|...
T Consensus 141 -~~~~~~Sa~~~----------~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 141 -VNYVETSAKTR----------ANVDKVFFDLMRE 164 (168)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred -CeEEEeCCCCC----------CCHHHHHHHHHHH
Confidence 57999999999 9999999988763
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.76 E-value=1e-17 Score=149.19 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=107.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHA 119 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~ 119 (463)
....++|+++|++|+|||||+++|++.... .+....++.+.....+..++ ..+.++||||++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 445789999999999999999999754110 11122233333333344444 478999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ-------IGIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~-------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
+|...+...+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+... ..+++.++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~---~~~~~~~~~~ 143 (177)
T 1wms_A 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQV---STEEAQAWCR 143 (177)
T ss_dssp GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSS---CHHHHHHHHH
T ss_pred hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccccccc---CHHHHHHHHH
Confidence 999988888999999999999987543221 222222221 4567 889999999973211 1123344443
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.. ..+|++++||+++ .+++++++.|...+
T Consensus 144 ~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 144 DN----GDYPYFETSAKDA----------TNVAAAFEEAVRRV 172 (177)
T ss_dssp HT----TCCCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred hc----CCceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 22 2478999999999 99999999887643
No 69
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=2.5e-18 Score=155.51 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=111.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++..... ......|.+.......+......+.++||||+++|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 346899999999999999999997541110 001122444444444444445688999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+..... .++++++.+.++
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---- 158 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVP--AEDGRRLADDLG---- 158 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC--HHHHHHHHHHHT----
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCC--HHHHHHHHHHcC----
Confidence 777888899999999999987432 2233444444443 566 89999999997432111 133444555554
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 159 -~~~~~~Sa~~g----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 -FEFFEASAKEN----------INVKQVFERLVDVI 183 (189)
T ss_dssp -CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred -CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999987643
No 70
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=1.3e-18 Score=167.12 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=111.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+.++|+++|++|+|||||+++|++.....| ...|+|++.....+.+.+..+.++||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----------------NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----------------ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 468999999999999999999987522211 2336777777777888888999999999887643
Q ss_pred ------HHHhh--cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 124 ------NMISG--ASQMDGAIVVVAASEGQMPQTREHLLLSKQIG-IDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 124 ------~~~~~--~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~-ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
..... ...+|++++|+|++.+ .+....+..+..++ +| +++|+||+|+.+...... +...+.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~l~~~lg 139 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGAKI---DIKKMRKELG 139 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTCCC---CHHHHHHHHS
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcccccHH---HHHHHHHHcC
Confidence 11122 2579999999999874 34555556666777 77 889999999874322111 1222223333
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|+.++++.|...+
T Consensus 140 -----~~~~~~Sa~~g----------~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 140 -----VPVIPTNAKKG----------EGVEELKRMIALMA 164 (271)
T ss_dssp -----SCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred -----CcEEEEEeCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 99999999987744
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=154.36 Aligned_cols=161 Identities=13% Similarity=0.082 Sum_probs=107.4
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCC
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPG 117 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG 117 (463)
.+....++|+++|+.++|||||+++|++.... .+....++.+.....+...+ ..+.++||||
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 84 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCC
Confidence 34455789999999999999999999653111 11112233333333333333 5789999999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
+++|...+...+..+|++|+|+|+++....+. .+.+..+... ++| +++|+||+|+.+.... ..+++.++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v--~~~~~~~~~~~~ 161 (192)
T 2il1_A 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREI--TRQQGEKFAQQI 161 (192)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS--CHHHHHHHHHTS
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc--CHHHHHHHHHhc
Confidence 99999888888999999999999987543222 2333333332 566 8999999999743211 112334444432
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
. ..+++++||+++ .|++++++.|...
T Consensus 162 ~----~~~~~~~SA~~g----------~gi~~l~~~l~~~ 187 (192)
T 2il1_A 162 T----GMRFCEASAKDN----------FNVDEIFLKLVDD 187 (192)
T ss_dssp T----TCEEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred C----CCeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 1 368999999999 9999999988763
No 72
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.76 E-value=1.8e-18 Score=155.89 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=108.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++..+|+++|++++|||||+++|++.. . . .. ....+.+ ...+..++..+.++||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~----------~~---~~t~~~~----~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-V-D----------TI---SPTLGFN----IKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-C-S----------SC---CCCSSEE----EEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-C-C----------cc---cccCccc----eEEEEECCEEEEEEECCCCHhHH
Confidence 457999999999999999999997542 0 0 00 0011212 22344467899999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.++...++ +.+.+.......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~ 151 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALSCNA----IQEALELDSIRS 151 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHH----HHHHTTGGGCCS
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCCHHH----HHHHhChhhccC
Confidence 888888899999999999987643 333334433332 3566 899999999975422222 222222111222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..+|++++||+++ .+++++++.|.+.+
T Consensus 152 ~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 152 HHWRIQGCSAVTG----------EDLLPGIDWLLDDI 178 (186)
T ss_dssp SCEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 3578999999999 99999999987754
No 73
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.76 E-value=4.7e-18 Score=150.27 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.|+|||||+++|++...... .....+.+.......+......+.++||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK--------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS--------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC--------------CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 3468999999999999999999975411100 00111222222233333334568899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
......+..+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+.++.... .+++.++.+..+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---- 142 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS--IQEAESYAESVG---- 142 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC--HHHHHHHHHHTT----
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccC--HHHHHHHHHHcC----
Confidence 8888888999999999999875432 22223333322 4566 88999999997532111 134444555544
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|.+.+
T Consensus 143 -~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 -AKHYHTSAKQN----------KGIEELFLDLCKRM 167 (170)
T ss_dssp -CEEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred -CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 99999999987643
No 74
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=2.6e-19 Score=181.70 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=115.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe-eEEEEeCCChhhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR-HYAHTDCPGHADY 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPGh~~f 121 (463)
...++|+++|++|+|||||+++|++.. ....+...|+|.+.....++..+. .+.++||||+.+|
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 346899999999999999999997531 112234557777776666766655 8999999999876
Q ss_pred -------HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 122 -------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 122 -------~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
...+...+..+|++|+|+|+ +...++.+.+..+...++| +++|+||+|+.+.... +...++.+.
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~----~~~~~l~~~-- 167 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE----ELKGLYESR-- 167 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT----HHHHHSSCC--
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH----HHHHHHHHH--
Confidence 34456678889999999999 7788999999999999999 8899999999854321 111221111
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
..+|++++||+++ .+++++++.|...++.+
T Consensus 168 ---~g~~v~~vSAktg----------~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 ---YEAKVLLVSALQK----------KGFDDIGKTISEILPGD 197 (423)
T ss_dssp ---TTCCCCCCSSCCT----------TSTTTHHHHHHHHSCCC
T ss_pred ---cCCCEEEEECCCC----------CCHHHHHHHHHHhhhhh
Confidence 2368999999999 89999999998877543
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=6.2e-18 Score=149.51 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
..+|+++|+.|+|||||+++|++...... . ....+.+.. ...........+.++||||+++|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------~---~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES-----------Y---IPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS-----------C---CCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------C---CCCccccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 57999999999999999999976311100 0 000111111 11222333456899999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
+...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+..... ..+...+....+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~--~~~~~~~~~~~~---- 140 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQ--SSEAEALARTWK---- 140 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSC--HHHHHHHHHHHT----
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccC--HHHHHHHHHHhC----
Confidence 8888899999999999986432 222333333333 2577 88999999997432211 122233334433
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+|++++||+++ .++++++++|.+.+..
T Consensus 141 -~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 -CAFMETSAKLN----------HNVKELFQELLNLEKR 167 (172)
T ss_dssp -CEEEECBTTTT----------BSHHHHHHHHHHTCCS
T ss_pred -CeEEEecCCCC----------cCHHHHHHHHHHHHhh
Confidence 68999999999 9999999999886544
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.76 E-value=7.1e-18 Score=154.80 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=106.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCCh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGH 118 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh 118 (463)
...+.++|+++|+.|+|||||+++|++..... .....+.+.....+..++ ..+.++||||+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPG-----------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCC-----------------CcCCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 34567999999999999999999997531100 001112222222233333 45669999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeccCcccHHHHHHH----------HH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQI--GIDNVVVYVNKADLVDREIMELV----------EL 184 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i----------~~ 184 (463)
++|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+. .+
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHH
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHH
Confidence 99988888888999999999999875433222 233344444 777 8899999999854322111 12
Q ss_pred HHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 185 EVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 185 ~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+...+.+.++. .|++++||+++ .|++++++.|.+.
T Consensus 168 ~~~~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHT
T ss_pred HHHHHHHhcCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 34445555543 57999999999 9999999998763
No 77
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=3.8e-18 Score=166.38 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh-hhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA-DYI 122 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~-~f~ 122 (463)
...+|+++|++|+|||||+++|++..... ..+. .+.|.+.....+...+..++++||||+. ++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i---------~s~~------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI---------TSRK------AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE---------CCCC------SSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc---------cCCC------CCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 35689999999999999999998652110 0000 1122111122345567889999999997 332
Q ss_pred --------HHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc-HHHHHHHHHHHHHHHHHc
Q psy3124 123 --------KNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-REIMELVELEVRDVLTAY 193 (463)
Q Consensus 123 --------~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l~~~ 193 (463)
.....++..+|++++|+|+.+ +..+++..+..+...+.| +++++||+|+.. ...+ .+.+.++.+.+
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~~~---~~~l~~l~~~~ 146 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKADL---LPHLQFLASQM 146 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHHH---HHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHHHH---HHHHHHHHHhc
Confidence 222456678999999999988 888888777777777888 778999999986 3332 23333333333
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
++ .+++++||+++ .++++|++.|...+|.
T Consensus 147 ~~----~~~i~iSA~~g----------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NF----LDIVPISAETG----------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CC----SEEEECCTTTT----------TTHHHHHHHHHTTCCB
T ss_pred Cc----CceEEEECCCC----------CCHHHHHHHHHHhCCc
Confidence 32 36899999999 9999999999987653
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=149.88 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=98.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY-- 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f-- 121 (463)
+.++|+++|++|+|||||+++|++..... .....|.+.......+......+.++||||++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD---------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc---------------ccCccccceeEEEEEECCEEEEEEEEecCCCCccch
Confidence 46899999999999999999997542110 0012344444433444333457889999999884
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI----GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l----~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.......++.+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+..... .++...+....+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~--~~~~~~~~~~~~-- 142 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVS--VEEGRACAVVFD-- 142 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSC--HHHHHHHHHHHT--
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccC--HHHHHHHHHHcC--
Confidence 3333455678999999999987432 2222333334433 677 88999999997432111 122333334433
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|+++++++|...+
T Consensus 143 ---~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 ---CKFIETSATLQ----------HNVAELFEGVVRQL 167 (175)
T ss_dssp ---SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 99999999987644
No 79
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=7.5e-18 Score=154.05 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=108.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|+.++|||||+++|++..... ......|.+.......+......+.|+||||+++|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS--------------CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc
Confidence 36899999999999999999997541110 0011124444444444444456889999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.+...+..+|++|+|+|++++.. ......+..+.. .++| +++|+||+|+.+.... ..+++.++.+.++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~----- 144 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVV--SSERGRQLADHLG----- 144 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCS--CHHHHHHHHHHHT-----
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCccccc--CHHHHHHHHHHCC-----
Confidence 88889999999999999987533 222333334433 2556 8999999999742211 1123444445544
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .++++++++|...
T Consensus 145 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 145 FEFFEASAKDN----------INVKQTFERLVDV 168 (203)
T ss_dssp CEEEECBTTTT----------BSSHHHHHHHHHH
T ss_pred CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 57999999999 8888888887663
No 80
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=2.9e-18 Score=153.90 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=84.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f 121 (463)
..++|+++|++++|||||+++|++.... .+...+++.+.....+..++ ..+.|+||||+++|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70 (183)
T ss_dssp EEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh
Confidence 4689999999999999999999753111 11122233333333333444 67899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
...+...+..+|++++|+|+++... ....+++..+... ++| +++|+||+|+.+.... ..+++.++.+..+
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQV--SKERGEKLALDYG--- 144 (183)
T ss_dssp ---CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCS--CHHHHHHHHHHHT---
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcC--CHHHHHHHHHHcC---
Confidence 8877788899999999999987432 2233344444432 566 8899999999742111 1123444455544
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .+++++++.|...+
T Consensus 145 --~~~~~~Sa~~~----------~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 --IKFMETSAKAN----------INVENAFFTLARDI 169 (183)
T ss_dssp --CEEEECCC-------------CCHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999999 99999999887644
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=3.2e-18 Score=150.91 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=105.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|+.|+|||||+++|.+...... .....+.+.......+......+.++||||+++|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--------------SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH
Confidence 468999999999999999999976411100 001112222222233333345789999999999877
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
.+...+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+.... ..+++.++.+..+ +
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-----~ 141 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCI--KNEEAEGLAKRLK-----L 141 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSS--CHHHHHHHHHHHT-----C
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccccc--CHHHHHHHHHHcC-----C
Confidence 77777889999999999987432 222233333322 3677 8899999999743211 1123444555544 5
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
|++++||+++ .+++++++.|.+.
T Consensus 142 ~~~~~Sa~~~----------~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 142 RFYRTSVKED----------LNVSEVFKYLAEK 164 (168)
T ss_dssp EEEECBTTTT----------BSSHHHHHHHHHH
T ss_pred eEEEEecCCC----------CCHHHHHHHHHHH
Confidence 8999999999 8999999988763
No 82
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.75 E-value=6e-18 Score=149.01 Aligned_cols=157 Identities=14% Similarity=0.114 Sum_probs=104.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+..+|+++|++|+|||||+++|.+..... +....+.... ....+......+.++||||+++|.
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE----------------KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC----------------SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCCccceEEEEEEECCEEEEEEEEECCChHHHH
Confidence 46899999999999999999997531100 0000111111 122233345578899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.++... ..+++.++.+.++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--- 139 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV--GKEQGQNLARQWC--- 139 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS--CHHHHHHHHHHTT---
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC--CHHHHHHHHHHcc---
Confidence 887788889999999999987422 112222222222 3677 8899999999743211 1133444444442
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
..|++++||+++ .|++++++.|.+.
T Consensus 140 -~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 140 -NCAFLESSAKSK----------INVNEIFYDLVRQ 164 (167)
T ss_dssp -SCEEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred -CCcEEEecCCCC----------CCHHHHHHHHHHH
Confidence 378999999999 9999999998764
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=153.75 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=109.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|+.|+|||||+++|++..... . + ...|+......+..++..+.++||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------~----~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQS-----------Q----N--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCC-----------S----S--CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-----------C----C--cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 457899999999999999999997542100 0 0 0112222233445567899999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..+...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+....+ ++.+.+....+
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~ 156 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVTSV----KVSQLLCLENI 156 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCCHH----HHHHHHTGGGC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCCHH----HHHHHhChhhc
Confidence 888888899999999999987532 223333333333 3667 88999999997532222 33333321222
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
....++++++||+++ .|+++++++|.+.+
T Consensus 157 ~~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 185 (190)
T 2h57_A 157 KDKPWHICASDAIKG----------EGLQEGVDWLQDQI 185 (190)
T ss_dssp CSSCEEEEECBTTTT----------BTHHHHHHHHHHHC
T ss_pred cCCceEEEEccCCCC----------cCHHHHHHHHHHHH
Confidence 223578999999999 99999999998754
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=5.4e-18 Score=153.80 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=106.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
.+..+|+++|++|+|||||+++|++.... . ...|+......+..++..+.++||||+++|.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA------------T-------LQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC------------C-------CCCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------c-------cccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 34679999999999999999999753110 0 0111111223455567899999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC---
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG--- 194 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g--- 194 (463)
..+...+..+|++++|+|++++.. ....+.+.... ..++| +++|+||+|+.+.... +++.+.+....
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAVSE----AELRSALGLLNTTG 156 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCH----HHHHHHTTCSSCCC
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCCCCH----HHHHHHhCCccccc
Confidence 777778889999999999998643 22333333332 24667 8999999999752111 23333333211
Q ss_pred ----CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 195 ----YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 195 ----~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.....++++++||+++ .|++++++.|.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 157 SQRIEGQRPVEVFMCSVVMR----------NGYLEAFQWLSQY 189 (190)
T ss_dssp ---CCSSCCEEEEECBTTTT----------BSHHHHHHHHHTT
T ss_pred cccccccceEEEEEeECCcC----------CCHHHHHHHHHhh
Confidence 0113478999999999 9999999998763
No 85
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.75 E-value=1.1e-17 Score=150.04 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
..+.++|+++|+.++|||||+++|.+.... ... ....+.+. .....+......+.|+||||+++|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~------------~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV------------EDY--EPTKADSY-RKKVVLDGEEVQIDILDTAGQEDY 79 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC------------CSC--CTTCCEEE-EEEEEETTEEEEEEEEECCCTTCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC------------CcC--CCccceEE-EEEEEECCEEEEEEEEECCCCccc
Confidence 456799999999999999999999754110 000 00011111 111222222347889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
...+...+..+|++++|+|+++.... ...+.+..+.. .++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 154 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV--SVEEAKNRAEQWN-- 154 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCS--CHHHHHHHHHHTT--
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc--CHHHHHHHHHHcC--
Confidence 98888888999999999999874321 22222222222 2677 8899999999753211 1234455555554
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .++++++++|.+.+
T Consensus 155 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 155 ---VNYVETSAKTR----------ANVDKVFFDLMREI 179 (187)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 58999999999 99999999987643
No 86
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=5.6e-18 Score=149.98 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI-- 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~-- 122 (463)
..+|+++|++|+|||||+++|++..... +...++|++.....+...+..+.++||||+++|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI----------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC----------------C-----CCCCCEEEEEETTEEEEEEECCCCSCSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec----------------cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCc
Confidence 5789999999999999999997642110 0112344443334455567889999999988763
Q ss_pred ----HHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 ----KNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ----~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
......+ ..+|++++|+|+.+ .....+.+..+...++| +++|.||+|+....... .+..++.+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 138 (165)
T 2wji_A 67 SIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGIE---IDVDKLEKILG-- 138 (165)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTCC---CCHHHHHHHHT--
T ss_pred chhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCC-EEEEEEchHhccccChh---hHHHHHHHHhC--
Confidence 1112222 37999999999976 23333344455556888 88999999986432111 11223333333
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|++++++.|...+
T Consensus 139 ---~~~~~~SA~~~----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 ---VKVVPLSAAKK----------MGIEELKKAISIAV 163 (165)
T ss_dssp ---SCEEECBGGGT----------BSHHHHHHHHHHHT
T ss_pred ---CCEEEEEcCCC----------CCHHHHHHHHHHHh
Confidence 57999999999 99999999987644
No 87
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.75 E-value=3.8e-18 Score=154.95 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=107.6
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee-EEEEecCCeeEEEEeCCCh
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA-HVEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~~~~i~liDtPGh 118 (463)
...+..++|+++|+.|+|||||+++|++..... +....+..... ...+......+.++||||+
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPT----------------AYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------SCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCC----------------ccCCeeeeeeEEEEEECCEEEEEEEEECCCc
Confidence 345567999999999999999999997642100 00011111111 1222223345689999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
++|.......+..+|++++|+|+++...... ...+..+... ++| +++|+||+|+.+........+++.++.+.++
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG 160 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCCcccHHHHHHHHHhcC
Confidence 9998888888899999999999987533222 2233333333 456 8899999999743211122344555666655
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+ .+++++||+++ .|++++++.|.+.+
T Consensus 161 ~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 186 (194)
T 3reg_A 161 C----VAYIEASSVAK----------IGLNEVFEKSVDCI 186 (194)
T ss_dssp C----SCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred C----CEEEEeecCCC----------CCHHHHHHHHHHHH
Confidence 3 23999999999 99999999987754
No 88
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=154.00 Aligned_cols=160 Identities=21% Similarity=0.138 Sum_probs=109.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....++|+++|++|+|||||+++|++..... ......|.+.......+......+.|+||||+++|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSH--------------DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCS--------------SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 3457899999999999999999997641110 00111233443334444445567899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
...+...+..+|++|+|+|+++... ......+..+... ++| +++|+||+|+.+.... ..++++.+....+
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--- 161 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREV--PTEEARMFAENNG--- 161 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCS--CHHHHHHHHHHTT---
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCccccccc--CHHHHHHHHHHcC---
Confidence 8777888899999999999987433 2223333334332 555 8899999999743211 1123444554443
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .+++++++.|...
T Consensus 162 --~~~~~~Sa~~~----------~gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 --LLFLETSALDS----------TNVELAFETVLKE 185 (193)
T ss_dssp --CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 68999999999 9999999988663
No 89
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=9e-18 Score=153.97 Aligned_cols=158 Identities=17% Similarity=0.103 Sum_probs=107.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.|+||||+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP----------------PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 45689999999999999999999764111 01112233333333344444 4788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|...+...+..+|++++|+|+++.... ...+.+..+.. .++| +++|+||+|+.+..... .+++..+.+..+
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~--~~~~~~~~~~~~-- 162 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS--QQRAEEFSEAQD-- 162 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC--HHHHHHHHHHHT--
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC--HHHHHHHHHHcC--
Confidence 998888899999999999999874321 12333333333 2455 88999999997432111 123333444443
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 163 ---~~~~~~Sa~~g----------~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 163 ---MYYLETSAKES----------DNVEKLFLDLACRL 187 (201)
T ss_dssp ---CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 99999999887644
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.75 E-value=3.4e-18 Score=153.60 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=106.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.....+|+++|+.++|||||+++|++.... . .....|.+ ...+...+..+.++||||+++|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~---------~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV------H---------TSPTIGSN----VEEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE------E---------EECCSSSS----CEEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC------c---------cCCcCcee----eEEEEECCEEEEEEECCCCHhH
Confidence 345789999999999999999999764110 0 00011111 1233446789999999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
...+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+ ++.+.+......
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~----~i~~~~~~~~~~ 153 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVA----EISQFLKLTSIK 153 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHH----HHHHHTTGGGCC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCCHH----HHHHHhCccccc
Confidence 8888888899999999999988643 333444444332 4566 89999999997532222 222222211122
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...++++++||+++ .|+++++++|.+
T Consensus 154 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 DHQWHIQACCALTG----------EGLCQGLEWMMS 179 (181)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHT
T ss_pred CCceEEEEccCCCC----------cCHHHHHHHHHh
Confidence 23468999999999 999999999876
No 91
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.9e-18 Score=153.39 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|+.++|||||+++|++...... .....|.+.......+......+.|+||||+++|..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 87 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPA--------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCC--------------EEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcc--------------cCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 468999999999999999999976421100 011224455555556666778899999999999999
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.....+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+.... ..++...+.+..+
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~----- 159 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVV--PTEKGQLLAEQLG----- 159 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--CHHHHHHHHHHHT-----
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc--CHHHHHHHHHHcC-----
Confidence 88889999999999999987432 222333444444 3566 8899999999643211 1123344444444
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|.+.+
T Consensus 160 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKEN----------ISVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999887643
No 92
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=5.4e-18 Score=152.14 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
...+.++|+++|+.|+|||||+++|++..... +. ....+... .....+......+.++||||+++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------~~---~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-----------DY---DPTIEDSY-LKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------CC---CTTCCEEE-EEEEEETTEEEEEEEEECCSCGG
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------CC---CCCcccee-EEEEEeCCcEEEEEEEECCCchh
Confidence 34568999999999999999999997531100 00 00111111 12222222233466799999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHH----HHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLL----SKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~----~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
|.......+..+|++++|+|+++....+ ..+.+.. ....++| +++|+||+|+.+.... ..+++.++.+.++
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~- 154 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKV--TRDQGKEMATKYN- 154 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCS--CHHHHHHHHHHHT-
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCc--CHHHHHHHHHHhC-
Confidence 9877777888899999999998753211 1222222 2235677 8899999998742111 1133444555544
Q ss_pred CCCCCcEEEccch-hhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 196 DGDNTPFVFGSAL-LALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 196 ~~~~~pvi~~Sa~-~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+ ++ .+++++++.|.+.
T Consensus 155 ----~~~~~~Sa~~~~----------~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 155 ----IPYIETSAKDPP----------LNVDKTFHDLVRV 179 (183)
T ss_dssp ----CCEEEEBCSSSC----------BSHHHHHHHHHHH
T ss_pred ----CeEEEeccCCCC----------CCHHHHHHHHHHH
Confidence 679999999 88 8999999988763
No 93
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=152.41 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
+..+.++|+++|+.|+|||||+++|.+..... +. ....+.+. .....+......+.|+||||+++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------~~---~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------DY---EPTKADSY-RKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------TC---CTTCCEEE-EEEEEETTEEEEEEEEECCCTTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCC-----------CC---CCccceEE-EEEEEECCEEEEEEEEcCCChhh
Confidence 44567999999999999999999997541100 00 00111111 11222222234788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
|...+...+..+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 150 (206)
T 2bov_A 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV--SVEEAKNRAEQWN- 150 (206)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCS--CHHHHHHHHHHHT-
T ss_pred hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccc--cHHHHHHHHHHhC-
Confidence 998888888999999999999874321 22222222222 2677 8899999999753211 1234445555544
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|+++++++|...+
T Consensus 151 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 175 (206)
T 2bov_A 151 ----VNYVETSAKTR----------ANVDKVFFDLMREI 175 (206)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999999887644
No 94
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=4e-18 Score=162.52 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=111.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|++|+|||||+++|++..... ....|+|++.....+...+..+.|+||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~----------------~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYV----------------ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEE----------------EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 46899999999999999999998642211 11237788877777777888999999999877642
Q ss_pred -----HH-Hhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 124 -----NM-ISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 124 -----~~-~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
.+ ...+ ..+|++++|+|++.. ......+..+..+++| +++|+||+|+....... .++.++.+.+|
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i~---~~~~~l~~~lg- 140 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEAKKTGMK---IDRYELQKHLG- 140 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTCC---BCHHHHHHHHC-
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCCCccchH---HHHHHHHHHcC-
Confidence 11 1222 579999999999873 2333455566677888 88999999997432211 12233334444
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|+++|++.|...+
T Consensus 141 ----~~vi~~SA~~g----------~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 141 ----IPVVFTSSVTG----------EGLEELKEKIVEYA 165 (258)
T ss_dssp ----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CCEEEEEeeCC----------cCHHHHHHHHHHHh
Confidence 68999999999 99999999988754
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.75 E-value=1.3e-17 Score=149.90 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=108.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|+.|+|||||+++|.+... .......|.+. ..+..++..+.++||||+++|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~---------------~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI---------------SHITPTQGFNI----KSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC---------------EEEEEETTEEE----EEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC---------------CcccCcCCeEE----EEEEECCEEEEEEECCCCHHHH
Confidence 4578999999999999999999965310 00011112221 2334457889999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ....+.+.... ..++| +++|.||+|+.+....++ +.+.+.......
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 149 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAPASE----IAEGLNLHTIRD 149 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCCHHH----HHHHTTGGGCCS
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCCHHH----HHHHhCchhccC
Confidence 888888899999999999987543 22333333222 23567 889999999975322222 222221111222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
..++++++||+++ .|+++++++|.+.+.
T Consensus 150 ~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 150 RVWQIQSCSALTG----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp SCEEEEECCTTTC----------TTHHHHHHHHHHTC-
T ss_pred CceEEEEccCCCC----------CCHHHHHHHHHHHHH
Confidence 3478999999999 999999999988654
No 96
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.74 E-value=6.8e-18 Score=152.99 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=107.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....++|+++|+.++|||||+++|++.... .......|.+.......+......+.|+||||+++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 83 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCC--------------C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 345789999999999999999999754110 001112233333333333333357899999999998
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
...+...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+..... .+++.++.+..+
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~--- 157 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVK--REEGEAFAREHG--- 157 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC--HHHHHHHHHHHT---
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccC--HHHHHHHHHHcC---
Confidence 7777777889999999999987432 2223333344332 566 88999999997432111 123444444444
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++++++||+++ .+++++++.|...
T Consensus 158 --~~~~~~Sa~~~----------~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 158 --LIFMETSAKTA----------CNVEEAFINTAKE 181 (191)
T ss_dssp --CEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 57999999999 9999999988763
No 97
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=151.45 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=107.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|+.++|||||+++|++.... .+....++.+.....+..++ ..+.|+||||+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS----------------ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC----------------CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 44689999999999999999999754110 11111222222223333344 5789999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|...+...+..+|++|+|+|+++... ....+.+..+.. .++| +++|+||+|+.+.... ..+++.++.+..++
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~- 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREV--SLAEAQSLAEHYDI- 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--CHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccccc--CHHHHHHHHHHcCC-
Confidence 99888888999999999999987432 222333333333 3466 8899999999743211 12344555555542
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+++++||+++ .+++++++.|...+
T Consensus 167 ---~~~~~~SA~~g----------~gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 ---LCAIETSAKDS----------SNVEEAFLRVATEL 191 (201)
T ss_dssp ---SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 28999999999 99999999987754
No 98
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=152.18 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=92.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEE-eeEEEEecCCeeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITIN-IAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
..+.++|+++|+.|+|||||+++|++..... +....+... .....+......+.|+||||+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPE----------------SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-----------------------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 3457899999999999999999997542110 000011111 11122222334788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHH--cCCCeEEEEEeccCcccHHHHHHH----------HHHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQ--IGIDNVVVYVNKADLVDREIMELV----------ELEV 186 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i----------~~~i 186 (463)
|...+...+..+|++++|+|+++....+.. ..+..+.. .++| +++|+||+|+.+.....+. .++.
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 988888888999999999999874322221 22333333 2677 8899999999854322221 1344
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.++.+.+++ .+++++||+++ .+++++++.|...+
T Consensus 174 ~~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 QEMARSVGA----VAYLECSARLH----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHTTC----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 555555542 48999999999 99999999887643
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=4.8e-18 Score=154.41 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=102.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++..+|+++|++|+|||||+++|++.. +. . .. .|+......+...+..+.++||||+++|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-------~~-----~---~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-------IV-----T---TI----PTIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-------CE-----E---EE----EETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-------cc-----c---cC----CcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 457899999999999999999996431 00 0 00 11112223445577899999999999987
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+++. +.+.......
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~----~~~~~~~~~~ 162 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMPVSELT----DKLGLQHLRS 162 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHH----HHTTGGGCSS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCCHHHHH----HHhCcccccC
Confidence 777778889999999999987643 223333333322 2566 89999999997532222222 2222111222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..++++++||+++ .|+++++++|...+
T Consensus 163 ~~~~~~~~SA~~g----------~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 163 RTWYVQATCATQG----------TGLYDGLDWLSHEL 189 (192)
T ss_dssp CCEEEEECBTTTT----------BTHHHHHHHHHHHT
T ss_pred CceEEEECcCCCc----------CCHHHHHHHHHHHH
Confidence 3478999999999 99999999998754
No 100
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.74 E-value=8.8e-18 Score=155.33 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=105.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee--EEEEecC----------CeeE
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYSTN----------TRHY 110 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~----------~~~i 110 (463)
...++|+++|+.++|||||+++|++.... .+....++.+.. ...+... ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC----------------cCCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 45689999999999999999999753110 001111222222 2223322 4679
Q ss_pred EEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHH
Q psy3124 111 AHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTR-EHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELE 185 (463)
Q Consensus 111 ~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~ 185 (463)
.|+||||+++|...+...+..+|++|+|+|+++....+.. +.+..+.. .++| +++|+||+|+.+..... .++
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~--~~~ 163 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN--ERQ 163 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC--HHH
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC--HHH
Confidence 9999999999998888899999999999999874332222 22221211 3455 89999999997532111 234
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.++.+..+ ++++++||+++ .++++++++|...+
T Consensus 164 ~~~~~~~~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ARELADKYG-----IPYFETSAATG----------QNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHTT-----CCEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHHHHCC-----CcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 445555544 57999999999 89999999887643
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.74 E-value=1.3e-17 Score=149.01 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=95.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec---CCeeEEEEeCCChh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST---NTRHYAHTDCPGHA 119 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtPGh~ 119 (463)
+..++|+++|+.|+|||||+++|++.... .+....++.+.....+.. ....+.++||||++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS----------------QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC----------------TTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC----------------cccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 45789999999999999999999764111 001111112222222332 24678999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH-------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHH
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ-------IGIDNVVVYVNKADLVDREIMELVELEVRDVLT 191 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~-------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~ 191 (463)
+|...+...+..+|++++|+|+++....+ ..+.+..+.. .++| +++|+||+|+.+.... ...+++.++.+
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-v~~~~~~~~~~ 147 (182)
T 1ky3_A 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKI-VSEKSAQELAK 147 (182)
T ss_dssp -------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCC-SCHHHHHHHHH
T ss_pred HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcccccccc-CCHHHHHHHHH
Confidence 99988888889999999999998754322 2222222222 4667 8899999999633210 01123333333
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.. ...|++++||+++ .|++++++.|...
T Consensus 148 ~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 148 SL----GDIPLFLTSAKNA----------INVDTAFEEIARS 175 (182)
T ss_dssp HT----TSCCEEEEBTTTT----------BSHHHHHHHHHHH
T ss_pred hc----CCCeEEEEecCCC----------CCHHHHHHHHHHH
Confidence 22 2478999999999 9999999988763
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.74 E-value=1.7e-17 Score=153.02 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=101.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~ 120 (463)
++..++|+++|+.|+|||||+++|++.... . ....++.+.....+... ...+.++||||+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~------------~-----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYR------------D-----TQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCC------------C-----BCCCCSCEEEEEECSSTTCCEEEEEECCCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc------------c-----ccCCcceeeEEEEecCCCccEEEEEECCCChh
Confidence 345789999999999999999999764210 0 00112222222223222 57899999999999
Q ss_pred hHH-HHHhhcccCCEEEEEEeCCCCCcHHHHHH---HHHH-H-----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHH
Q psy3124 121 YIK-NMISGASQMDGAIVVVAASEGQMPQTREH---LLLS-K-----QIGIDNVVVYVNKADLVDREIMELVELEVRDVL 190 (463)
Q Consensus 121 f~~-~~~~~~~~aD~ailVVda~~g~~~qt~e~---l~~~-~-----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l 190 (463)
|.. .+...+..+|++++|+|+++ ...+..+. +... . ..++| +++|+||+|+.+....+.+.+.+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~l~~~l 144 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKSAKLIQQQLEKEL 144 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCcccHHHHHHHHHHHH
Confidence 987 45556788999999999976 21222222 2211 1 12456 899999999985443455555555544
Q ss_pred HH-------------------cCCC-----------CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 191 TA-------------------YGYD-----------GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 191 ~~-------------------~g~~-----------~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.. .-.. +..++++++||+++.+.+ ...|+++++++|.+
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~----~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT----GSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHH
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc----cccChHHHHHHHHH
Confidence 41 0010 015789999999872221 11578899988865
No 103
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.74 E-value=1.4e-17 Score=149.90 Aligned_cols=157 Identities=19% Similarity=0.181 Sum_probs=100.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+.++|+++|++|+|||||+++|++..... ...+ ...+.......+......+.++||||+++|..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 67 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD-----------EYDP----TIEDSYRKQVVIDGETCLLDILDTAGQEEYSA 67 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCC-----------CCCT----TCCEEEEEEEEETTEEEEEEEEECCCC---CT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCC-----------CCCC----CchheEEEEEEECCcEEEEEEEECCCcHHHHH
Confidence 46899999999999999999997541100 0000 00111112222322334577899999999888
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.+..... +++..+.+.++
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~---~~~~~~~~~~~---- 139 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVDT---KQAQDLARSYG---- 139 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSCH---HHHHHHHHHHT----
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccCH---HHHHHHHHHcC----
Confidence 7778888999999999998743222 2222222222 3677 88999999997432111 23333444444
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .|+++++++|...+
T Consensus 140 -~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 -IPFIETSAKTR----------QGVDDAFYTLVREI 164 (189)
T ss_dssp -CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999887744
No 104
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.74 E-value=1.6e-17 Score=146.33 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=89.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.++|+++|++|+|||||+++|++.... ......|.+.. ....+......+.++||||+++|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 578999999999999999999643111 01111233332 22233344457889999999999888
Q ss_pred HHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
....+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+..... .++...+....+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~----- 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVS--VDEGRACAVVFD----- 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSC--HHHHHHHHHHTT-----
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccC--HHHHHHHHHHhC-----
Confidence 8788899999999999987432 222233333333 3677 88999999997432111 122333344433
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+++ .|++++++.|.+.
T Consensus 138 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 161 (166)
T 3q72_A 138 CKFIETSAALH----------HNVQALFEGVVRQ 161 (166)
T ss_dssp CEEEECBGGGT----------BSHHHHHHHHHHH
T ss_pred CcEEEeccCCC----------CCHHHHHHHHHHH
Confidence 68999999999 9999999988763
No 105
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.74 E-value=5.7e-18 Score=151.59 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=101.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+...+|+++|+.|+|||||+++|.+..... +..+ ..+.... ....+......+.++||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~-----------~~~~---t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-----------DYVP---TVFDNFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCCC---eeeeeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 457899999999999999999997541100 0000 0000000 001122233456799999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeccCcccHHHHHH--------HHHHHHHHH
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQI--GIDNVVVYVNKADLVDREIMEL--------VELEVRDVL 190 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~--------i~~~i~~~l 190 (463)
..+...+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+...... ..++..++.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 8878888999999999999874332222 233333332 677 889999999975432100 123444555
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+.++. .+++++||+++ .|++++++.|...+.
T Consensus 150 ~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGA----PAYIECSSKSQ----------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHS
T ss_pred HHcCC----CEEEEEECCCC----------CCHHHHHHHHHHHHh
Confidence 55542 58999999999 999999999877543
No 106
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.74 E-value=1.7e-17 Score=145.49 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=103.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
+..+|+++|+.|+|||||+++|.+..... ... ...+... .....+......+.++||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------~~~--~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD------------ECD--PTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS------------CCC--TTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc------------ccC--CccceEE-EEEEEECCEEEEEEEEECCCchhhhH
Confidence 35789999999999999999997541110 000 0001111 11222222335678999999999888
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI----GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l----~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+... ..+++.++.+..+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~---- 138 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTV---ESRQAQDLARSYG---- 138 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCS---CHHHHHHHHHHHT----
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhccc---CHHHHHHHHHHcC----
Confidence 88788889999999999986432 2223333333322 677 889999999875211 1223444444444
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+++ .++++++++|...
T Consensus 139 -~~~~~~Sa~~~----------~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 139 -IPYIETSAKTR----------QGVEDAFYTLVRE 162 (166)
T ss_dssp -CCEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred -CeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 57999999999 9999999998764
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=9.2e-18 Score=153.37 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=102.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
.+..+|+++|++|+|||||+++|++..... ...|+......+..++..+.++||||+++|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-------------------HVPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-------------------cCCCCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 346789999999999999999997531100 0011111123444566889999999999987
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC---
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG--- 194 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g--- 194 (463)
..+...+..+|++++|+|+++... ....+.+.... ..++| +++|+||+|+.+.... +++.+.+....
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~ 158 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEAISE----ERLREMFGLYGQTT 158 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTCCCH----HHHHHHHTCTTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCccccCCH----HHHHHHhCcccccc
Confidence 777777889999999999987542 33333333332 24677 8899999999742111 23444443221
Q ss_pred ------CC---CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 195 ------YD---GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 195 ------~~---~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+. ...++++++||+++ .|+++++++|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 159 GKGSVSLKELNARPLEVFMCSVLKR----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp CSSCCCTTTCCSCCEEEEECBTTTT----------BSHHHHHHHHHTTC
T ss_pred cccccccccccCceEEEEEEECCCC----------CCHHHHHHHHHHhc
Confidence 11 12468999999999 99999999987643
No 108
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.73 E-value=2.3e-17 Score=148.98 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=95.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.++.++|+++|+.|+|||||+++|++.... ... ....+... .....+......+.++||||+++|
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~------------~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV------------DEY--DPTIEDSY-RKQVVIDGETCLLDILDTAGQEEY 82 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCC------------SCC--CTTCCEEE-EEEEEETTEEEEEEEEECCC----
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCc------------ccc--CCccceEE-EEEEEECCEEEEEEEEECCChHHH
Confidence 356789999999999999999999754110 000 00001111 111222222345889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
...+...+..+|++++|+|+.+....+ ....+..+.. .++| +++|+||+|+.+... ..+++.++.+..+
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~-- 156 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTV---DTKQAHELAKSYG-- 156 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCS---CHHHHHHHHHHHT--
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccC---CHHHHHHHHHHcC--
Confidence 888888889999999999998754322 2222333332 2677 889999999874211 1234444555544
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .++++++++|...+
T Consensus 157 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 181 (190)
T 3con_A 157 ---IPFIETSAKTR----------QGVEDAFYTLVREI 181 (190)
T ss_dssp ---CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999999887643
No 109
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.73 E-value=1.6e-17 Score=158.43 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=109.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....++|+++|++|+|||||+++|++... +. . .....++|.+.....+.+.+..+.|+||||+.++
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~------~~------~--~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQA------FE------S--KLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCC------SC------C--CTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCC------cc------c--CCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence 34578999999999999999999975410 00 0 0011124444444556678889999999998765
Q ss_pred -----------HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEEe-ccCcccHHHHHHHH-
Q psy3124 122 -----------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI-----GIDNVVVYVN-KADLVDREIMELVE- 183 (463)
Q Consensus 122 -----------~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l-----~ip~iivvvN-KiD~~~~~~~~~i~- 183 (463)
...+...+..+|++|+|+|+.. ...+....+..+... +.| .++++| |+|+.+....+.+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~-~i~vv~nK~Dl~~~~~~~~i~~ 162 (260)
T 2xtp_A 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGH-TIVLFTHKEDLNGGSLMDYMHD 162 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGG-EEEEEECGGGGTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhcc-EEEEEEcccccCCccHHHHHHh
Confidence 2333446788999999999985 666666666666554 567 456666 99998433222121
Q ss_pred ---HHHHHHHHHcCCCCC-CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 184 ---LEVRDVLTAYGYDGD-NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 184 ---~~i~~~l~~~g~~~~-~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.++.+.+..++.... ..+ +++||+++ .++++|++.|...++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 163 SDNKALSKLVAACGGRICAFNN-RAEGSNQD----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp CCCHHHHHHHHHTTTCEEECCT-TCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCeEEEecC-cccccccH----------HHHHHHHHHHHHHHH
Confidence 334556666542110 112 78899999 899999999887554
No 110
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=6e-18 Score=151.55 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=102.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.|+|||||+++|++.... .+. ....+.+. .....+......+.++||||+++|.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----------~~~---~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-----------DSY---DPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------SCC---CTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC-----------CCC---CCCccccE-EEEEEECCEEEEEEEEeCCCchhhh
Confidence 35789999999999999999999743110 000 01112222 2222232233567899999999986
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHH-HHHH----HHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQT-REHL----LLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l----~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
......+..+|++++|+|+++...... ...+ ..+...++| +++|+||+|+.+.... ..+++.++.+.++
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--- 142 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVI--SYEEGKALAESWN--- 142 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCS--CHHHHHHHHHHTT---
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhccee--cHHHHHHHHHHhC---
Confidence 666677788999999999987432111 1111 122223677 8899999999632211 1234445555554
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .+++++++.|...+
T Consensus 143 --~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 143 --AAFLESSAKEN----------QTAVDVFRRIILEA 167 (181)
T ss_dssp --CEEEECCTTSH----------HHHHHHHHHHHHHH
T ss_pred --CcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 58999999999 99999999887754
No 111
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.73 E-value=3.3e-17 Score=157.61 Aligned_cols=167 Identities=13% Similarity=0.185 Sum_probs=100.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChh--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHA-- 119 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~-- 119 (463)
..++|+++|++|+|||||+|+|++........ .........+++++.....+..++ ..++++||||+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY--------PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCC--------CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 36899999999999999999996431110000 000011133444444444554444 389999999983
Q ss_pred -------------------hhHHHHHhh------cccCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 120 -------------------DYIKNMISG------ASQMDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 120 -------------------~f~~~~~~~------~~~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
.|+...... -..+|+++++|++. ++......+.+..+.. ++| +|+|+||+|+
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~ 156 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 156 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGG
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCC
Confidence 222221111 12267898888655 4778888887777766 778 8899999999
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 174 VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 174 ~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+....+..++.+.+.+...+ ++++++||.++ .++.++++.|...+|
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-----CCCCCC---------------------CHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHHHHHcC-----CeEEcCCCCCC----------hhHHHHHHHHhcCCC
Confidence 977767777777877777655 56888999998 899999999988554
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2e-17 Score=150.34 Aligned_cols=161 Identities=19% Similarity=0.119 Sum_probs=106.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....++|+++|+.++|||||+++|++..... .. ....+.+.. ....+......+.|+||||+++|
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------------~~--~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRD------------TY--IPTIEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCC------------TT--SCCCCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCC------------cc--cCcccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 4457899999999999999999997631110 00 000111111 11223333457899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
...+...+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+.... .++...+...++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~- 144 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVD---TREAQAVAQEWK- 144 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSC---HHHHHHHHHHHT-
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccC---HHHHHHHHHHhC-
Confidence 8888888899999999999986432 111222322222 2567 8999999999742211 123333444444
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
++++++||+++ .|+++++++|...+..
T Consensus 145 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 145 ----CAFMETSAKMN----------YNVKELFQELLTLETR 171 (199)
T ss_dssp ----CEEEECBTTTT----------BSHHHHHHHHHHHCSS
T ss_pred ----CeEEEEecCCC----------CCHHHHHHHHHHHHhh
Confidence 57999999999 9999999999886543
No 113
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=6.5e-18 Score=150.82 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=103.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|+.|+|||||+++|++..... +. ....+.... ..+..++ ..+.++||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~---~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------DY---DPTIEDSYT---KICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------SC---CTTCCEEEE---EEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------cc---CCCcCceEE---EEEEECCEEEEEEEEECCCchh
Confidence 457899999999999999999997641100 00 001111111 2233333 5788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHH----HHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLS----KQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~----~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
|.......+..+|++++|+|+++... ....+.+..+ ...++| +++|+||+|+.+..... .++...+....+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~- 145 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVP--RSEASAFGASHH- 145 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSC--HHHHHHHHHHTT-
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC--HHHHHHHHHHcC-
Confidence 87767777788999999999987432 1222222222 224677 88999999997532111 122333334433
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .|++++++.|...+
T Consensus 146 ----~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 146 ----VAYFEASAKLR----------LNVDEAFEQLVRAV 170 (181)
T ss_dssp ----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 99999999887644
No 114
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.2e-17 Score=151.15 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=109.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
.+.++|+++|+.++|||||+++|++..... ......+.+.......+......+.|+||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 356899999999999999999997641110 011122344444444454445678999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++|+|+|+++..... ....+..+.. .++| +++|+||+|+.+... ..++..++.+..+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~--- 151 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREV---DRNEGLKFARKHS--- 151 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCS---CHHHHHHHHHHTT---
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCccccc---CHHHHHHHHHHcC---
Confidence 77788889999999999998753322 2223333333 2455 889999999963211 1123344454443
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .++++++++|...+.
T Consensus 152 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 152 --MLFIEASAKTC----------DGVQCAFEELVEKII 177 (195)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred --CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 67999999999 999999999887553
No 115
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=8.1e-18 Score=148.62 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=103.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.++|+++|++++|||||+++|.+.... .......+.+.......+......+.++||||+++|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN--------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC--------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh
Confidence 579999999999999999999754110 001111122222222333323357889999999998777
Q ss_pred HHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
+...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+.... .++..++.+..+ +
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 139 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVT---ADQGEALAKELG-----I 139 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSC---HHHHHHHHHHHT-----C
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccC---HHHHHHHHHHcC-----C
Confidence 7777889999999999987532 2223333333332 566 8899999999532111 123344444444 5
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
|++++||+++ .+++++++.|...+
T Consensus 140 ~~~~~Sa~~~----------~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 140 PFIESSAKND----------DNVNEIFFTLAKLI 163 (170)
T ss_dssp CEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred eEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 7999999999 99999999887644
No 116
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=1.8e-17 Score=149.86 Aligned_cols=164 Identities=14% Similarity=0.069 Sum_probs=103.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.++.++|+++|+.++|||||+++|++...... .....+.+.......+......+.|+||||+++|
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--------------TEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--------------CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCCcceEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 45679999999999999999999975311100 0111123333333333333357899999999998
Q ss_pred H-HHHHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 I-KNMISGASQMDGAIVVVAASEGQMP-QTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 ~-~~~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
. ......+..+|++|+|+|+++.... ...+.+..+. ..++| +++|+||+|+.+..... .++..++....+
T Consensus 83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~- 158 (189)
T 1z06_A 83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVP--TDLAQKFADTHS- 158 (189)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSC--HHHHHHHHHHTT-
T ss_pred hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeC--HHHHHHHHHHcC-
Confidence 8 5566678899999999999874321 1222222222 23667 88999999997432111 123344444444
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++. +..+++++++.|...+
T Consensus 159 ----~~~~~~Sa~~~~-------~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 ----MPLFETSAKNPN-------DNDHVEAIFMTLAHKL 186 (189)
T ss_dssp ----CCEEECCSSSGG-------GGSCHHHHHHHHC---
T ss_pred ----CEEEEEeCCcCC-------cccCHHHHHHHHHHHH
Confidence 579999999861 1257889999887654
No 117
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=4.1e-17 Score=167.44 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh-----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD----- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~----- 120 (463)
.+|+++|.+|+|||||+|+|++... ...+...|+|.+.....+.+.++.+.++||||.+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~---------------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK---------------AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---------------ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 4799999999999999999986411 01123447888877777888899999999999764
Q ss_pred ----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHH-HHHHHHcCC
Q psy3124 121 ----YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEV-RDVLTAYGY 195 (463)
Q Consensus 121 ----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i-~~~l~~~g~ 195 (463)
+...+..++..||++++|+|+..+......+....++..++| +++|+||+|+.+.. ..++ .++ ..+++
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D~~~~~-----~~~~~~~~-~~lg~ 139 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENLREF-----EREVKPEL-YSLGF 139 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSHHHH-----HHHTHHHH-GGGSS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCcccc-----HHHHHHHH-HhcCC
Confidence 344556678999999999999999887776666667777888 88999999986321 1122 222 24453
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
.+++++||+++ .|+.+|++.|...++
T Consensus 140 ----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 140 ----GEPIPVSAEHN----------INLDTMLETIIKKLE 165 (439)
T ss_dssp ----CSCEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCC----------CCHHHHHHHHHHhcc
Confidence 25789999999 999999999987665
No 118
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.9e-18 Score=155.97 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=105.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++..... ......|.+.....+.+......+.|+||||+++|.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEECCEEEEEEEEECCCccchh
Confidence 346899999999999999999997641100 011112233332223332223578999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++|+|+|+++....+ ..+.+..+... ++| +++|+||+|+.+..... .+++.++.+..+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~---- 149 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVP--TEESKTFAQENQ---- 149 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSC--HHHHHHHHHHTT----
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccC--HHHHHHHHHHcC----
Confidence 77778889999999999998754322 22333334333 566 88999999997432111 123444444443
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .++++++++|...+.
T Consensus 150 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 -LLFTETSALNS----------ENVDKAFEELINTIY 175 (223)
T ss_dssp -CEEEECCCC-C----------CCHHHHHHHHHHHHT
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 68999999999 999999999887554
No 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3e-17 Score=150.87 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=106.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
.+..++|+++|+.|+|||||+++|.+..... . .....+.+.. ....+......+.|+||||+++|
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------------~--~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPE------------V--YVPTVFENYV-ADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE-EEEEETTEEEEEEEEECTTCTTC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCC------------c--CCCcccceEE-EEEEECCEEEEEEEEECCCcHHH
Confidence 3457899999999999999999997631100 0 0001111211 11222222357889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHH-H-HHHHHHHHHc--CCCeEEEEEeccCcccHHHHHH-H---------HHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQ-T-REHLLLSKQI--GIDNVVVYVNKADLVDREIMEL-V---------ELEVR 187 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~q-t-~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~-i---------~~~i~ 187 (463)
.......+..+|++++|+|+++....+ . ...+..+... ++| +++|+||+|+.+.....+ + .++..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhhcccCCCCHHHHH
Confidence 877777888999999999998743211 2 2333444443 777 889999999985432211 1 11233
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++....+. .+++++||+++ .|+++++++|.+.+.
T Consensus 166 ~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 166 AMAVRIQA----YDYLECSAKTK----------EGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHhcCC----CEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 34444432 47999999999 999999999987543
No 120
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.73 E-value=1e-17 Score=153.57 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=106.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|+.++|||||+++|++..... ......+.+.......+......+.|+||||+++|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN--------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT--------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 46899999999999999999997641110 0011122333333333332335789999999999987
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~ 199 (463)
.+...+..+|++|+|+|+++....+. ...+..+.. .++| +++|+||+|+.+.... ..++..++....+
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~----- 144 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVV--EYDVAKEFADANK----- 144 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS--CHHHHHHHHHHTT-----
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc--CHHHHHHHHHHcC-----
Confidence 77788899999999999987543222 223333333 2455 8899999999753211 1123344444443
Q ss_pred CcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 200 ~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .+++++++.|...+
T Consensus 145 ~~~~~~Sa~~g----------~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 145 MPFLETSALDS----------TNVEDAFLTMARQI 169 (206)
T ss_dssp CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 89999998887644
No 121
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.73 E-value=9.7e-18 Score=153.34 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=103.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++...... .....+.+.......+......+.|+||||+++|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--------------SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------------------CCEEEEEEEETTEEEEEEEECCTTHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--------------CCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH
Confidence 4578999999999999999999975421110 00111222222222332223678999999999987
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++|+|+|+++....+ ....+..+.. .++| +++|+||+|+.+..... ..+..++.+..+
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~---- 161 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVT--FLEASRFAQENE---- 161 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSC--HHHHHHHHHHTT----
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccC--HHHHHHHHHHcC----
Confidence 77777788999999999998754322 2233333332 3566 89999999997432111 123344444443
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .|++++++.|...+
T Consensus 162 -~~~~~~SA~~g----------~gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 -LMFLETSALTG----------ENVEEAFLKCARTI 186 (200)
T ss_dssp -CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999999 99999999887644
No 122
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.7e-17 Score=151.92 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=105.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec--CCeeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST--NTRHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDtPGh~~ 120 (463)
...++|+++|+.|+|||||+++|++.... ......++.+.....+.. ....+.|+||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC----------------SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45789999999999999999999764111 011112333333333333 345789999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHH-H------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSK-Q------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~-~------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
|...+...+..+|++|+|+|++++...+. ...+..+. . .++| +++|+||+|+.+... ..+++..+...
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---~~~~~~~~~~~ 145 (207)
T 1vg8_A 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQV---ATKRAQAWCYS 145 (207)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCS---CHHHHHHHHHH
T ss_pred HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCccccc---CHHHHHHHHHh
Confidence 88777778889999999999987543222 22222221 1 3667 889999999973211 11233333332
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
. ..+|++++||+++ .|+++++++|...+
T Consensus 146 ~----~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 K----NNIPYFETSAKEA----------INVEQAFQTIARNA 173 (207)
T ss_dssp T----TSCCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred c----CCceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 2 2478999999999 99999999887654
No 123
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1e-17 Score=152.01 Aligned_cols=162 Identities=15% Similarity=0.059 Sum_probs=108.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++...... .. ...+.... ....+......+.++||||+++|.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~-----------~~---~t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEE-----------YV---PTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYD 80 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCS-----------CC---CSSCCCEE-EEEESSSCEEEEEEECCCCSSSST
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC-----------CC---CcccceeE-EEEEECCEEEEEEEEECCCCcchh
Confidence 3568999999999999999999986411100 00 00011111 112222233578899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HH-HHHHHHHHc--CCCeEEEEEeccCcccHHHHH-H---------HHHHHHH
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TR-EHLLLSKQI--GIDNVVVYVNKADLVDREIME-L---------VELEVRD 188 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~-e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~-~---------i~~~i~~ 188 (463)
..+...+..+|++++|+|+++...-+ .. .++..+... ++| +++|+||+|+.+..... . ..++..+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 87778889999999999998754322 22 334444444 677 88999999998532111 0 1234455
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.+.+++ .+++++||+++ .|++++++.|...+
T Consensus 160 ~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGA----CCYVECSALTQ----------KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTC----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHcCC----cEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 5555553 47999999999 99999999987643
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=9.2e-18 Score=172.13 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=107.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh-----
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA----- 119 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~----- 119 (463)
..+|+++|.+|+|||||+++|++.. ....+...|+|.+.....+++.+..+.++||||++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~---------------~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 67 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGER---------------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP 67 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEE---------------CC-----------CEEEECTTCSSCCEEEC---------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---------------ceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh
Confidence 3689999999999999999997531 01123345888888778888888999999999985
Q ss_pred ---hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 120 ---DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 120 ---~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
.+...+..++..||++|+|+|+.++......+....+...++| +++|+||+|+.+.. .++.++. .+++
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~~~~------~~~~~~~-~lg~- 138 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMR------ANIYDFY-SLGF- 138 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC-----------CCCSSG-GGSS-
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCccch------hhHHHHH-HcCC-
Confidence 5666667788899999999999999988887777777778888 88999999997431 1111111 2333
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.+++++||+++ .|+.+|++.|...++.
T Consensus 139 ---~~~~~iSA~~g----------~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 ---GEPYPISGTHG----------LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ---CCCEECBTTTT----------BTHHHHHHHHHHTGGG
T ss_pred ---CCeEEEeCcCC----------CChHHHHHHHHHhcCc
Confidence 26799999999 9999999999887753
No 125
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.72 E-value=6.6e-17 Score=147.22 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=103.4
Q ss_pred cCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEE--EEe-cCCeeEEEEeCC
Q psy3124 40 KSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV--EYS-TNTRHYAHTDCP 116 (463)
Q Consensus 40 ~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~-~~~~~i~liDtP 116 (463)
.+.+...+|+++|..++|||||+++|.+..... ...+.+...... .+. .....+.++|||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~ 77 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-----------------ETLFLESTNKIYKDDISNSSFVNFQIWDFP 77 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG-----------------GGGGCCCCCSCEEEEECCTTSCCEEEEECC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc-----------------ceeeeccccceeeeeccCCCeeEEEEEECC
Confidence 344567899999999999999999886531110 111111111112 222 345789999999
Q ss_pred ChhhhHHHH---HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHH----HHHHHH
Q psy3124 117 GHADYIKNM---ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREI----MELVEL 184 (463)
Q Consensus 117 Gh~~f~~~~---~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~----~~~i~~ 184 (463)
|+++|...+ ...+..+|++|+|+|+++............+.. .++| +++|.||+|+.+++. ...+..
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~ 156 (196)
T 3llu_A 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQ 156 (196)
T ss_dssp SSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHH
Confidence 999987666 677788999999999998733322222222222 2666 889999999985432 223333
Q ss_pred HHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 185 EVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 185 ~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+..+.+.........++++++||++ .+++++++.|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~e~Sa~~-----------~~v~~~f~~l~~ 193 (196)
T 3llu_A 157 RANDDLADAGLEKLHLSFYLTSIYD-----------HSIFEAFSKVVQ 193 (196)
T ss_dssp HHHHHHHHTTCTTSCEEEEEECTTS-----------THHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCcceEEEEech-----------hhHHHHHHHHHH
Confidence 3333444433323457899999986 478888888765
No 126
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=153.98 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=104.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
+..+.++|+++|..|+|||||+++|++....... . ...+.+. .....+......+.|+||||+++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---------~-----~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY---------D-----PTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC---------C-----CCSEEEE-EEEEC----CEEEEEEEECCCCT
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC---------C-----CccceEE-EEEEEECCEEEEEEEEECCCccc
Confidence 3456899999999999999999999864111000 0 0001111 22233334567789999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
|...+...+..+|++++|+|+++....+. .+.+..+.. .++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~- 160 (201)
T 3oes_A 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQ--AVEGKKLAESWG- 160 (201)
T ss_dssp TCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSC--HHHHHHHHHHHT-
T ss_pred hHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccC--HHHHHHHHHHhC-
Confidence 88777788889999999999987432222 222222222 3677 88999999997432211 123344444444
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .+++++++.|...+
T Consensus 161 ----~~~~~~Sa~~~----------~~v~~l~~~l~~~i 185 (201)
T 3oes_A 161 ----ATFMESSAREN----------QLTQGIFTKVIQEI 185 (201)
T ss_dssp ----CEEEECCTTCH----------HHHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999999 99999999887754
No 127
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=6.8e-18 Score=151.36 Aligned_cols=158 Identities=19% Similarity=0.115 Sum_probs=104.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++.++|+++|+.|+|||||+++|++.... ... ...|.+ ...+..++..+.++||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~----------~~~-----~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV----------TTK-----PTIGFN----VETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE----------EEC-----SSTTCC----EEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC----------ccC-----CcCccc----eEEEEECCEEEEEEECCCCHhHH
Confidence 45799999999999999999999643110 000 011211 12344467889999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+ ++.+.+.......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~ 151 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALSAS----EVSKELNLVELKD 151 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCCHH----HHHHHTTTTTCCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCCHH----HHHHHhCcccccC
Confidence 777888899999999999987643 333444443332 4566 89999999997532222 2333332222233
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..++++++||+++ .|+++++++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 152 RSWSIVASSAIKG----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SCEEEEEEBGGGT----------BTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCC----------cCHHHHHHHHHHHH
Confidence 3468999999999 99999999987643
No 128
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.72 E-value=3.9e-18 Score=154.10 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=106.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++..+|+++|++++|||||+++|...... .. ....+.+ ...+...+..+.++||||+++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------------~~---~~t~~~~----~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV------------TT---VPTVGVN----LETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE------------EE---CSSTTCC----EEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC------------Cc---CCCCceE----EEEEEECCEEEEEEECCCCHhHH
Confidence 45789999999999999999999542100 00 0011222 22344467899999999999987
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++++|+|+++... ....+.+..... .++| +++|+||+|+.+....+++. +.+.......
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~----~~~~~~~~~~ 155 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAASEAEIA----EQLGVSSIMN 155 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCCHHHHH----HHTTGGGCCS
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCCHHHHH----HHhChhhccC
Confidence 777777889999999999987643 333333333332 2566 89999999997542222222 2222111222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..+|++++||+++ .+++++++.|.+.+
T Consensus 156 ~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 182 (189)
T 2x77_A 156 RTWTIVKSSSKTG----------DGLVEGMDWLVERL 182 (189)
T ss_dssp SCEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCc----------cCHHHHHHHHHHHH
Confidence 3468999999999 99999999987754
No 129
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=1.5e-17 Score=149.95 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=109.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+...+|+++|+.|+|||||+++|++.... .+...++|.+.....+...+..+.++||||+++|.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc----------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence 35689999999999999999999764110 11123556665555666678899999999998773
Q ss_pred ------HHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 123 ------KNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 123 ------~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
......+ ..+|++++|+|+.. .......+..+...++| +++|.||+|+.+..... .+..++.+.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 142 (188)
T 2wjg_A 69 ANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGIE---IDVDKLEKILG 142 (188)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTCC---CCHHHHHHHHT
T ss_pred cccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-EEEEEEhhhccccccch---HHHHHHHHHhC
Confidence 1122222 35899999999975 34444555566667888 88999999986432111 12333333444
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
++++++||+++ .+++++++.|...+..
T Consensus 143 -----~~~~~~Sa~~~----------~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 -----VKVVPLSAAKK----------MGIEELKKAISIAVKD 169 (188)
T ss_dssp -----SCEEECBGGGT----------BSHHHHHHHHHHHHTT
T ss_pred -----CCeEEEEecCC----------CCHHHHHHHHHHHHHh
Confidence 57999999999 9999999999876543
No 130
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.9e-17 Score=152.32 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=104.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~ 120 (463)
...++|+++|++++|||||+++|++.... .+....++.+.....+...+ ..+.|+||||+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 34689999999999999999999754110 01111222223223334444 5789999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
|...+...+..+|++++|+|+.+... ....+.+..+... ++| +++|+||+|+.+.... .++..++.+.++
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 155 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVT---ADQGEALAKELG-- 155 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSC---HHHHHHHHHHHT--
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccC---HHHHHHHHHHcC--
Confidence 98777778889999999999987432 2223333333332 566 8899999999532111 123334444444
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+|++++||+++ .++++++++|...+
T Consensus 156 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 ---IPFIESSAKND----------DNVNEIFFTLAKLI 180 (213)
T ss_dssp ---CCEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999988887644
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.72 E-value=1.8e-17 Score=152.65 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=108.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....++|+++|++++|||||+++|++..... +.. ...+.... ....+......+.|+||||+++|
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~-----------~~~---~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPT-----------DYI---PTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------SCC---CSSCCCEE-EEEECSSCEEEEEEECCCCCCCC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCc-----------cCC---CccceeEE-EEEEECCEEEEEEEEECCCcHHH
Confidence 3457999999999999999999997541100 000 00111111 11223333457899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHH-H-HHHHHHHHc--CCCeEEEEEeccCcccHHHHH-H-----HHHHHHHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQT-R-EHLLLSKQI--GIDNVVVYVNKADLVDREIME-L-----VELEVRDVLT 191 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt-~-e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~-~-----i~~~i~~~l~ 191 (463)
...+...+..+|++++|+|+++....+. . ..+..+... ++| +++|+||+|+.+..... . ..+++.++.+
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 8777778899999999999987432222 1 233344433 677 88999999997533210 0 1234455555
Q ss_pred HcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 192 AYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 192 ~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
.++. .+++++||+++ .+++++++.|...+..+
T Consensus 150 ~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 150 QIGA----AAYIECSSKTQ----------QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHHCC
T ss_pred HcCC----ceEEEccCCCC----------CCHHHHHHHHHHHHhhh
Confidence 5552 58999999999 99999999988755433
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.72 E-value=1.9e-17 Score=170.71 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=95.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|++|+|||||+++|++.. ........|+|.+.....+..++..+.|+||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 35789999999999999999997541 111222346777776667777889999999999987643
Q ss_pred H--------HHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc-CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 124 N--------MISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI-GIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 124 ~--------~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l-~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
. +...+..+|++++|+|++++...+ ..+...++..+ ++| +++|+||+|+.+....+. +++ ...
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~~~--~~l----~~~ 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADALI--RAI----ADG 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHHHH--HHH----HHH
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccchhH--HHH----Hhc
Confidence 2 344678899999999999887542 22222333333 455 899999999985543321 222 221
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++ .|++++||+++ .|+++|+++|...++
T Consensus 370 ~~----~~~i~vSAktg----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 TG----TEVIGISALNG----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp HT----SCEEECBTTTT----------BSHHHHHHHHTHHHH
T ss_pred CC----CceEEEEECCC----------CCHHHHHHHHHHHHh
Confidence 22 57999999999 999999999988665
No 133
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.72 E-value=6.4e-17 Score=147.88 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=106.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++....... . ...+.... ....+......+.++||||+++|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------~---~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----------V---PTVFENYI-ADIEVDGKQVELALWDTAGQEDYD 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----------C---CSSCCCCE-EEEEETTEEEEEEEECCCCSGGGT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-----------C---CcccceEE-EEEEECCEEEEEEEEECCCchhHH
Confidence 45689999999999999999999764211000 0 00011111 112222223478899999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeccCcccHHHH-HHH---------HHHHHH
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQI--GIDNVVVYVNKADLVDREIM-ELV---------ELEVRD 188 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~-~~i---------~~~i~~ 188 (463)
......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+.... +.+ .++..+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 777778899999999999987432221 2333444443 777 8899999999853221 111 124445
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+.+.++. .+++++||+++ .|++++++.|.+
T Consensus 167 ~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~i~~ 196 (201)
T 2gco_A 167 MANRISA----FGYLECSAKTK----------EGVREVFEMATR 196 (201)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHH
T ss_pred HHHhCCC----cEEEEeeCCCC----------CCHHHHHHHHHH
Confidence 5555542 47999999999 999999998865
No 134
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=1.3e-17 Score=160.01 Aligned_cols=153 Identities=21% Similarity=0.243 Sum_probs=106.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI-- 122 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~-- 122 (463)
..+|+++|++|+|||||+++|++.....+ ...|+|++.....+.. +..+.++||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~----------------~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG----------------NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC----------------SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc----------------CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 47899999999999999999986421111 1126676655555655 7789999999998764
Q ss_pred ----HHHHhhc--ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 ----KNMISGA--SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ----~~~~~~~--~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
......+ ..+|++++|+|++.. .........+...++| +++|+||+|+....... .+...+.+.++
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg-- 137 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGKK---INVDKLSYHLG-- 137 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTCC---CCHHHHHHHHT--
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCcH---HHHHHHHHHcC--
Confidence 1112223 369999999999762 2333444555667988 88999999986432111 12222333334
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+|++++||+++ .|+++|++.|...+.
T Consensus 138 ---~~vi~~SA~~g----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ---VPVVATSALKQ----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ---SCEEECBTTTT----------BSHHHHHHHHHHSCT
T ss_pred ---CCEEEEEccCC----------CCHHHHHHHHHHHHh
Confidence 68999999999 999999999988554
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=5.4e-17 Score=166.59 Aligned_cols=160 Identities=24% Similarity=0.265 Sum_probs=111.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|++|+|||||+++|++.... ......|.|.+.....+..++..+.++||||..++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~---------------~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA---------------LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE---------------EECCCC------CCEEEEETTEEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc---------------ccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccc
Confidence 4589999999999999999999865210 0111235666665566777888999999999865432
Q ss_pred H------------HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHH--HHHHHHHHHHH
Q psy3124 124 N------------MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREI--MELVELEVRDV 189 (463)
Q Consensus 124 ~------------~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~--~~~i~~~i~~~ 189 (463)
. ....+..+|.+++|+|+..+...+..+....+...+.| +++|+||+|+.+... .+++.+++.+.
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 322 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREK 322 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHH
Confidence 1 23456779999999999998887776666777778887 889999999985322 34444444444
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+...+ ..|++++||+++ .++++|++.+...
T Consensus 323 ~~~~~----~~~~~~~SA~~g----------~gv~~l~~~i~~~ 352 (439)
T 1mky_A 323 LYFID----YSPLIFTSADKG----------WNIDRMIDAMNLA 352 (439)
T ss_dssp CGGGT----TSCEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred hccCC----CCcEEEEECCCC----------CCHHHHHHHHHHH
Confidence 43332 378999999999 8999999888763
No 136
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.71 E-value=4.4e-17 Score=143.96 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=94.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.++|+++|++++|||||+++|++...... .+...+.........+......+.++||||+++|...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA--------------HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEETTEEEEEEEECCCCC------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc--------------ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh
Confidence 47899999999999999999975321110 0001111122222233333456789999999998763
Q ss_pred H-HhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 125 M-ISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQI----GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 125 ~-~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~l----~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
+ ...+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+.... ..++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---- 140 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREV--SLEEGRHLAGTLS---- 140 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCS--CHHHHHHHHHHTT----
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccC--CHHHHHHHHHHcC----
Confidence 3 334677999999999987432 1222333333322 677 8899999999743211 1133444455544
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+|++++||+++ .+++++++.|...
T Consensus 141 -~~~~~~Sa~~~----------~~v~~l~~~l~~~ 164 (169)
T 3q85_A 141 -CKHIETSAALH----------HNTRELFEGAVRQ 164 (169)
T ss_dssp -CEEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred -CcEEEecCccC----------CCHHHHHHHHHHH
Confidence 58999999999 9999999988763
No 137
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.71 E-value=7e-18 Score=156.10 Aligned_cols=159 Identities=18% Similarity=0.099 Sum_probs=101.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-C--eeEEEEeCCCh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-T--RHYAHTDCPGH 118 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~--~~i~liDtPGh 118 (463)
....++|+++|+.|+|||||+++|++..... ......+.+.. ...+... + ..+.++||||+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~ 71 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEK--------------NYNATVGAVNH--PVTFLDDQGNVIKFNVWDTAGQ 71 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTC--------------EEETTTTEEEE--EEEEEBTTSCEEEEEEEEECSG
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeeE--EEEEEeCCCcEEEEEEEecCCc
Confidence 3457899999999999999999987431110 00011122222 2222222 2 56899999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHH-HHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTR-EHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~-e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
++|.......+..+|++|+|+|++++...+.. +.+..+.. .++| +++|+||+|+.+..... .+++..+...
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~-- 146 (218)
T 4djt_A 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKIS--KKLVMEVLKG-- 146 (218)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----CC--HHHHHHHTTT--
T ss_pred hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC--HHHHHHHHHH--
Confidence 99876666777889999999999986443322 22233322 3567 88999999997542211 1233333332
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..++++++||+++ .|++++++.|...+
T Consensus 147 ---~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 147 ---KNYEYFEISAKTA----------HNFGLPFLHLARIF 173 (218)
T ss_dssp ---CCCEEEEEBTTTT----------BTTTHHHHHHHHHH
T ss_pred ---cCCcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 2478999999999 88888888887754
No 138
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.71 E-value=1.6e-16 Score=148.26 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=105.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh----
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH---- 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh---- 118 (463)
...++|+++|.+|+|||||+++|++..... ....+.|.+.....+...+..+.|+||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV----------------QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEE----------------ECC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 346899999999999999999997541110 011233444444455556788999999999
Q ss_pred --hhh---HHHHHhhcccCCEEEEEEeCCCCCc---HHHHHHHHHHHHc--CCCeEEEEEeccCcccHHHH-HHHHHHHH
Q psy3124 119 --ADY---IKNMISGASQMDGAIVVVAASEGQM---PQTREHLLLSKQI--GIDNVVVYVNKADLVDREIM-ELVELEVR 187 (463)
Q Consensus 119 --~~f---~~~~~~~~~~aD~ailVVda~~g~~---~qt~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~-~~i~~~i~ 187 (463)
+.. ...+......+|++|+|+|+++... ....+.+..+... ++| +++|+||+|+.+.... ....+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~ 169 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIK 169 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHH
Confidence 431 1222334577899999999987643 2223444445544 677 8999999999854322 12223444
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++....+ ..++++++||+++ .|++++++.|...+
T Consensus 170 ~~~~~~~---~~~~~~~~SA~~g----------~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 170 QILDNVK---NPIKFSSFSTLTG----------VGVEQAKITACELL 203 (228)
T ss_dssp HHHHHCC---SCEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEEecccC----------CCHHHHHHHHHHHH
Confidence 5554443 2368999999999 99999999887644
No 139
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.71 E-value=2e-17 Score=151.29 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=81.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC----CeeEEEEeCCCh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN----TRHYAHTDCPGH 118 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----~~~i~liDtPGh 118 (463)
+..++|+++|+.++|||||+++|++..... ..+....+..+.....+... ...+.|+||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKF--------------LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcc--------------cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 456899999999999999999997541000 00011111122222333334 457899999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeccCccc-HHHHHHHHHHHHHHH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ------IGIDNVVVYVNKADLVD-REIMELVELEVRDVL 190 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~------l~ip~iivvvNKiD~~~-~~~~~~i~~~i~~~l 190 (463)
++|...+...+..+|++++|+|++++.. ....+++..+.. .++| +++|+||+|+.+ .... ..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v--~~~~~~~~~ 160 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV--RLDMAQDWA 160 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC--CHHHHHHHH
Confidence 9999888888999999999999987543 233334444443 3566 899999999975 2211 123455566
Q ss_pred HHcCCCCCCCcEEEccchh-hccCCCCCCCCccHHHHHHHhhhc
Q psy3124 191 TAYGYDGDNTPFVFGSALL-ALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~-~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+.++ ++++++||++ + .+++++++.|...
T Consensus 161 ~~~~-----~~~~~~Sa~~~~----------~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 161 TTNT-----LDFFDVSANPPG----------KDADAPFLSIATT 189 (208)
T ss_dssp HHTT-----CEEEECCC-----------------CHHHHHHHHH
T ss_pred HHcC-----CEEEEeccCCCC----------cCHHHHHHHHHHH
Confidence 6554 6899999999 9 8888888888664
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=7.9e-17 Score=152.55 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=108.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh---
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH--- 118 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh--- 118 (463)
..+.++|+++|++|+|||||+++|++...... .....+.|.......+.+.+..++|+||||.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFS--------------RLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccc--------------cCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 34679999999999999999999986411100 0011234544445566778899999999997
Q ss_pred -----hhhHHHHHhhc----ccCCEEEEEEeCCCCCcHHHHHHHHHHHHc------CCCeEEEEEeccCcccHHHHHHHH
Q psy3124 119 -----ADYIKNMISGA----SQMDGAIVVVAASEGQMPQTREHLLLSKQI------GIDNVVVYVNKADLVDREIMELVE 183 (463)
Q Consensus 119 -----~~f~~~~~~~~----~~aD~ailVVda~~g~~~qt~e~l~~~~~l------~ip~iivvvNKiD~~~~~~~~~i~ 183 (463)
+++...+..++ ..+|++|+|+|+.. ........+..+... +.| +|++.||+|+.+...-+.+.
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~~l~ 161 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGGSLHDYVS 161 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCCCHHHHHh
Confidence 55666665555 88999999999975 555666656555553 566 88999999997533222222
Q ss_pred ----HHHHHHHHHcCCCCCCCcEEEccch-----hhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 184 ----LEVRDVLTAYGYDGDNTPFVFGSAL-----LALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 184 ----~~i~~~l~~~g~~~~~~pvi~~Sa~-----~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++.+++.+|. +++++++. .+ .++.+|++.+...++
T Consensus 162 ~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~~~----------~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 162 NTENRALRELVAECGG-----RVCAFDNRATGREQE----------AQVEQLLGMVEGLVL 207 (247)
T ss_dssp HCCCHHHHHHHHHTTT-----CEEECCTTCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCC-----eEEEEeCCCCccccH----------HHHHHHHHHHHHHHH
Confidence 357777777763 24444432 24 689999999887654
No 141
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=4e-16 Score=152.51 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=107.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEec-CCeeEEEEeCCChhhhHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST-NTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPGh~~f~~ 123 (463)
..+|+++|.+|+|||||+++|++... .......+.|++.....+.. .+..+.++||||+++|..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~---------------~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYS---------------AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCC---------------TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---------------CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 57899999999999999999865310 11112335565554444443 567899999999999954
Q ss_pred HH-----HhhcccCCEEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEeccCcccHHHHH----HHHHHHHH
Q psy3124 124 NM-----ISGASQMDGAIVVVAASEGQMPQTREHL-LLSKQ-----IGIDNVVVYVNKADLVDREIME----LVELEVRD 188 (463)
Q Consensus 124 ~~-----~~~~~~aD~ailVVda~~g~~~qt~e~l-~~~~~-----l~ip~iivvvNKiD~~~~~~~~----~i~~~i~~ 188 (463)
.. ...+..+|++|+|+|+++....+..+.+ ..+.. .++| +++|+||+|+.+++... ...+++.+
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~ 146 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSE 146 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHH
Confidence 33 3445789999999999987644433322 22222 2667 89999999998643333 44467777
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+.+.+|+. .+|++++||++. ++.+++..+..
T Consensus 147 ~~~~~g~~--~~~~~~tSa~~~-----------~i~e~~~~iv~ 177 (307)
T 3r7w_A 147 TSSEFGFP--NLIGFPTSIWDE-----------SLYKAWSQIVC 177 (307)
T ss_dssp HHHTTTCC--SCEEEECCTTSS-----------HHHHHHHHHHH
T ss_pred HHHHcCCC--CeEEEEeeecCC-----------hHHHHHHHHHH
Confidence 77776642 478999999874 55556555554
No 142
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.69 E-value=8.6e-17 Score=145.12 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=101.4
Q ss_pred cccCCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC
Q psy3124 38 SSKSSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG 117 (463)
Q Consensus 38 ~~~~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 117 (463)
......+.++|+++|..|+|||||+++|++..... ...+ .+... .....+......+.++||||
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-----------~~~~----t~~~~-~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ-----------EESP----EGGRF-KKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC-----------CCCT----TCEEE-EEEEEETTEEEEEEEEECSS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CcCC----CcceE-EEEEEECCEEEEEEEEECCC
Confidence 33455678999999999999999999997541110 0000 01111 12222322234567899999
Q ss_pred hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 118 h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
+++|. .+..+|++++|+|+++....+. ...+..+.. .++| +++|.||+|+.+........+++.++...
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~~~~~~~~~~~ 150 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPRVIDDSRARKLSTD 150 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccccCHHHHHHHHHH
Confidence 99876 4567999999999987543333 333333333 3567 88999999995211101112344455555
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++ .++++.+||+++ .+++++++.|...
T Consensus 151 ~~----~~~~~e~Sa~~~----------~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 151 LK----RCTYYETCATYG----------LNVERVFQDVAQK 177 (184)
T ss_dssp TT----TCEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred cC----CCeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 44 368999999999 9999999988763
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.69 E-value=2.5e-16 Score=141.68 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=103.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....+|+++|+.++|||||+++|++..... . ....+.... ....+......+.++||||+++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------~-----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------N-----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------S-----CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC-----------C-----CCCccceeEEEEEEECCEEEEEEEEECCCChhh
Confidence 457899999999999999999997641100 0 000111111 11223334467889999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHH--cCCCeEEEEEeccCcccH-HHHHHH---------HHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQ--IGIDNVVVYVNKADLVDR-EIMELV---------ELEVR 187 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~--l~ip~iivvvNKiD~~~~-~~~~~i---------~~~i~ 187 (463)
.......+..+|++++|+|+++....+.. ..+..+.. .++| +++|.||+|+.+. ....++ .++..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 77777778899999999999874322221 22223333 2556 8999999999742 111111 13445
Q ss_pred HHHHHcCCCCCCCcEEEccch-hhccCCCCCCCCccHHHHHHHhhh
Q psy3124 188 DVLTAYGYDGDNTPFVFGSAL-LALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~-~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++.+.++ .++++++||+ ++ .+++++++.|..
T Consensus 148 ~~~~~~~----~~~~~e~Sa~~~~----------~gi~~l~~~i~~ 179 (184)
T 1m7b_A 148 NMAKQIG----AATYIECSALQSE----------NSVRDIFHVATL 179 (184)
T ss_dssp HHHHHHT----CSEEEECBTTTBH----------HHHHHHHHHHHH
T ss_pred HHHHHcC----CcEEEEeeecCCC----------cCHHHHHHHHHH
Confidence 5555554 2689999998 67 899999998865
No 144
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=4.1e-17 Score=145.58 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=101.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY-- 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f-- 121 (463)
+..+|+++|.+|+|||||+++|++.... . .....+.|.+.....+..++..+.++||||++++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~-----~----------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA-----I----------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS-----C----------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-----e----------eeCCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 4578999999999999999999764110 0 0011234444333445556778999999998653
Q ss_pred ------HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 122 ------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 122 ------~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
+..+...+..+|++++|+|+++....+..+.+..+... ++| +++|+||+|+.++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~---------~~~-- 135 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL---------GMS-- 135 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC---------EEE--
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh---------hhh--
Confidence 11233457889999999999876643333443333332 577 889999999853210 000
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.....+++++||+++ .+++++++.|.+.+..
T Consensus 136 ---~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 136 ---EVNGHALIRLSARTG----------EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ---EETTEEEEECCTTTC----------TTHHHHHHHHHHHC--
T ss_pred ---hccCCceEEEeCCCC----------CCHHHHHHHHHHHhhh
Confidence 002368999999999 9999999999886543
No 145
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=1.5e-17 Score=154.32 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=109.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.....++|+++|+.|+|||||+++|+...... ......|.+.......+......+.++||||+++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK--------------KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTC--------------EEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 34567899999999999999999954321110 0112235666655555555667899999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT-REHLLLSKQI--GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt-~e~l~~~~~l--~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
|...+...+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+..... +...+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~--- 148 (221)
T 3gj0_A 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVKA----KSIVFHRKKN--- 148 (221)
T ss_dssp TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSSCG----GGCCHHHHHT---
T ss_pred HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccccccH----HHHHHHHHcC---
Confidence 87777777889999999999997543222 2222333222 677 88999999997432111 2222333333
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .|++++++.|...+
T Consensus 149 --~~~~~~Sa~~~----------~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 149 --LQYYDISAKSN----------YNFEKPFLWLARKL 173 (221)
T ss_dssp --CEEEECBGGGT----------BTTTHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 88989988887654
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=6.8e-17 Score=166.60 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=112.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC-----
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG----- 117 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 117 (463)
+...+|+++|.+|+|||||+++|++... ...+...|+|.+......++.+..+.++||||
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~---------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI---------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE---------------C-----------CEEEECTTCSSCCEEECCCC-----
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc
Confidence 4467899999999999999999976310 01223457888887788888899999999999
Q ss_pred ---hhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcC
Q psy3124 118 ---HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYG 194 (463)
Q Consensus 118 ---h~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g 194 (463)
++.+...+..++..+|++|+|+|+.++......+.+..+...+.| +++|+||+|+.+.. .++.++ ..++
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~~~~~------~~~~e~-~~lg 157 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMR------ANIYDF-YSLG 157 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC---------------CCS-GGGS
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccchhhh------hhHHHH-HHcC
Confidence 777888888888999999999999999999888888888888888 88999999986321 111111 1233
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+ -+++++||.++ .++.+|++.+...++
T Consensus 158 ~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 158 F----GEPYPISGTHG----------LGLGDLLDAVAEHFK 184 (456)
T ss_dssp S----SSEEECCTTTC----------TTHHHHHHHHHTTGG
T ss_pred C----CceEEeecccc----------cchHHHHHHHHhhcc
Confidence 3 24679999999 999999999988664
No 147
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=163.96 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=104.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|++++|||||+++|++... .. . ..|+......+...+..+.|+||||+++|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~------------~~---~----~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI------------VT---T----IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC------------EE---E----EEETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC------------CC---c----ccccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 457999999999999999999964310 00 0 0133333345666788999999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHH-HHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 124 NMISGASQMDGAIVVVAASEGQM-PQTREHLL-LSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~-~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
.+...+..+|++|+|+|+++... ....+.+. ++... ++| +++|+||+|+.+....++ +...+........
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~----i~~~~~~~~~~~~ 299 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNAAE----ITDKLGLHSLRHR 299 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHH----HHHHHTCTTCCSS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccCHHH----HHHHhchhhhhcC
Confidence 88888899999999999976443 22333332 22222 666 899999999985432222 2222222222334
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+|++++||+++ .|+++|++.|...+
T Consensus 300 ~~~~~~vSAk~g----------~gi~el~~~l~~~l 325 (329)
T 3o47_A 300 NWYIQATCATSG----------DGLYEGLDWLSNQL 325 (329)
T ss_dssp CEEEEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 578999999999 99999999988754
No 148
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=143.23 Aligned_cols=162 Identities=13% Similarity=0.035 Sum_probs=102.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCCh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGH 118 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh 118 (463)
......+|+++|+.++|||||+++|++..... +.. ..+.+.....+..++ ..+.++||||+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 78 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT----------------EYI-PTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCC-CcccceeEEEEEECCEEEEEEEEECCCC
Confidence 34567899999999999999999997542110 000 111111112233344 45779999999
Q ss_pred hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeccCcccHHH-HHH---------HHH
Q psy3124 119 ADYIKNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQI--GIDNVVVYVNKADLVDREI-MEL---------VEL 184 (463)
Q Consensus 119 ~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~l--~ip~iivvvNKiD~~~~~~-~~~---------i~~ 184 (463)
++|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+... ... ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 99877667778899999999999874332222 233333332 677 889999999974321 111 112
Q ss_pred HHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 185 EVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 185 ~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+...+.+.+++ .+++++||+++ .+++++++.|...+
T Consensus 158 ~~~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 158 AAKLLAEEIKA----ASYIECSALTQ----------KNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC----cEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 34444444442 48999999999 99999999887644
No 149
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=1.3e-16 Score=147.85 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=105.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeE--EEEecCCeeEEEEeCCChh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH--VEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~~~~i~liDtPGh~ 119 (463)
..+..+|+++|..++|||||+.+++.... ..+....+..+... ..+......+.|+||+|++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f----------------~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF----------------DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCC----------------C----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCC----------------CCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 34468999999999999999999975311 11111122222222 2233334567899999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH---HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSK---QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~---~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
+|.......++.+|++++|.|.+.... ......+..+. .-++| +++|.||+|+.+...+ ..++..++.+.++
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V--~~~e~~~~a~~~~- 149 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV--SIEEGERKAKELN- 149 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS--CHHHHHHHHHHHT-
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc--cHHHHhhHHHHhC-
Confidence 998888888899999999999987432 22233333332 23566 8899999999753211 1234455555655
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++.+||+++ .+++++++.|...++
T Consensus 150 ----~~~~e~SAktg----------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 ----VMFIETSAKAG----------YNVKQLFRRVAAALP 175 (216)
T ss_dssp ----CEEEEEBTTTT----------BSHHHHHHHHHHHC-
T ss_pred ----CeeEEEeCCCC----------cCHHHHHHHHHHHHH
Confidence 67999999999 999999999987664
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.9e-16 Score=144.05 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=101.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
++..+|+++|+.++|||||+++|++..... .. ....+... .....+......+.++||||+++ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------~~---~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW-----------EY---DPTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS-----------CC---CTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc-----------cc---CCCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 457899999999999999999997641100 00 00111111 11223333346788999999988 4
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
......+..+|++++|+|+++... ....+.+..+. ..++| +++|+||+|+.+.... ..++..++.+..+
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--- 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV--STEEGEKLATELA--- 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS--CHHHHHHHHHHHT---
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc--CHHHHHHHHHHhC---
Confidence 455666788999999999987322 22222233222 24677 8899999999753111 1123334444443
Q ss_pred CCCcEEEccchhhccCCCCCCCCc-cHHHHHHHhhhcC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEP-SIHRLLDALDKHI 234 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~-~i~~Ll~~L~~~l 234 (463)
++++++||+++ . +++++++.|...+
T Consensus 164 --~~~~~~Sa~~g----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 --CAFYECSACTG----------EGNITEIFYELCREV 189 (196)
T ss_dssp --SEEEECCTTTC----------TTCHHHHHHHHHHHH
T ss_pred --CeEEEECCCcC----------CcCHHHHHHHHHHHH
Confidence 68999999999 8 9999999887643
No 151
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.68 E-value=1.3e-16 Score=147.53 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=106.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~ 120 (463)
....++|+++|..++|||||+++|++..... +....+.... ....+......+.|+||||+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPE----------------TYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCS----------------SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCC----------------CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHh
Confidence 3457899999999999999999997641110 0001111111 1222333446788999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeccCcccHHH-H---------HHHHHHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQI--GIDNVVVYVNKADLVDREI-M---------ELVELEV 186 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~l--~ip~iivvvNKiD~~~~~~-~---------~~i~~~i 186 (463)
|.......+..+|++|+|+|+++...-.. ...+..+... ++| +++|.||+|+.+... . ....++.
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 98877788899999999999987543222 3333444443 666 889999999974210 0 0112344
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCcc-HHHHHHHhhhcC
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPS-IHRLLDALDKHI 234 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~-i~~Ll~~L~~~l 234 (463)
.++.+.+++ .+++++||+++ .+ ++++++.|...+
T Consensus 167 ~~~~~~~~~----~~~~e~SA~~g----------~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 167 CAIAKQLGA----EIYLEGSAFTS----------EKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHHHTC----SEEEECCTTTC----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CEEEEeccCCC----------cccHHHHHHHHHHHH
Confidence 555555552 38999999999 88 999999887754
No 152
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.68 E-value=2.4e-18 Score=157.15 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=100.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.++|||||+++|++.. .........+.+.......+......+.|+||||+++|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 96 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT--------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 96 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC--------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 346899999999999999999986420 011112222333433333333333578999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQI---GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGD 198 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~l---~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~ 198 (463)
..+...+..+|++++|+|+++....+ ..+.+..+... ++| +++|+||+|+.+..... .++...+...++
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~--~~~~~~~~~~~~---- 169 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVD--YTTAKEFADSLG---- 169 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCC--SCC-CHHHHTTT----
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCC--HHHHHHHHHHcC----
Confidence 77777888999999999998854322 23333334333 566 88999999997432111 012233333333
Q ss_pred CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 199 NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 199 ~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+|++++||+++ .++++++++|.+.+.
T Consensus 170 -~~~~~vSA~~g----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 -IPFLETSAKNA----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp -CCBCCCCC-------------HHHHHHHHHHTTTTT
T ss_pred -CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 67999999999 999999999987553
No 153
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=144.11 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=101.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|.+|+|||||+++|++..... ......+.+.......+......+.++||||+++|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 86 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG 86 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG--------------GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc--------------cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch
Confidence 456899999999999999999996431100 000111222222222233233467789999998875
Q ss_pred H-HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 K-NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ~-~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
. .....+..+|++|+|+|+++... ....+.+..+.. .++| +++|.||+|+.+..... .++..++.+..+
T Consensus 87 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~a~~~~-- 161 (195)
T 3cbq_A 87 GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVS--LEEGRHLAGTLS-- 161 (195)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSC--HHHHHHHHHHTT--
T ss_pred hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcC--HHHHHHHHHHhC--
Confidence 4 33345678999999999986332 222233333332 3677 88999999997432111 123344444443
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
++++++||+++ .+++++++.|...+.
T Consensus 162 ---~~~~e~Sa~~~----------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 162 ---CKHIETSAALH----------HNTRELFEGAVRQIR 187 (195)
T ss_dssp ---CEEEEEBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ---CEEEEEcCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999999 999999999887554
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=142.25 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=99.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 41 SSLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 41 ~~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.+....+|+++|..++|||||+++|++..... +.. ...+.+.. ....+......+.|+||||+++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-----------~~~---~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFIS-----------EYD---PNLEDTYS-SEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------CCC---TTCCEEEE-EEEEETTEEEEEEEEECCC---
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCc-----------ccC---CCccceee-EEEEECCEEEEEEEEECCCCCc
Confidence 34567999999999999999999997641100 000 01111111 1122333345688999999988
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
|.. +...+..+|++++|+|+++... ....+.+..+.. .++| +++|.||+|+.+.... ..+++.++.+.+
T Consensus 82 ~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v--~~~~~~~~~~~~ 157 (187)
T 3c5c_A 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQV--TKAEGVALAGRF 157 (187)
T ss_dssp CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSS--CHHHHHHHHHHH
T ss_pred chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCcc--CHHHHHHHHHHc
Confidence 754 3456788999999999986432 222233333332 3677 8899999999743211 113344455555
Q ss_pred CCCCCCCcEEEccc-hhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 194 GYDGDNTPFVFGSA-LLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 194 g~~~~~~pvi~~Sa-~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+ ++++.+|| +++ .+++++++.|...
T Consensus 158 ~-----~~~~e~Sa~~~g----------~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 158 G-----CLFFEVSACLDF----------EHVQHVFHEAVRE 183 (187)
T ss_dssp T-----CEEEECCSSSCS----------HHHHHHHHHHHHH
T ss_pred C-----CcEEEEeecCcc----------ccHHHHHHHHHHH
Confidence 4 57999999 888 8999999988763
No 155
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.66 E-value=9.1e-16 Score=140.95 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=103.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe-eEEEEecCCeeEEEEeCCChhhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI-AHVEYSTNTRHYAHTDCPGHADY 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPGh~~f 121 (463)
....+|+++|..++|||||+++|++..... +....+..+. ....+......+.|+||||+++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE----------------NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh
Confidence 456899999999999999999997641110 0001111111 11222333467899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHH--HHHHHHHHH--cCCCeEEEEEeccCcccH-HHHHHH---------HHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQT--REHLLLSKQ--IGIDNVVVYVNKADLVDR-EIMELV---------ELEVR 187 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt--~e~l~~~~~--l~ip~iivvvNKiD~~~~-~~~~~i---------~~~i~ 187 (463)
.......+..+|++|+|+|+++...... ...+..+.. .++| +++|.||+|+.+. ....++ .++..
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 168 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 168 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence 7777777889999999999987432221 122233333 2556 8999999999742 111111 13445
Q ss_pred HHHHHcCCCCCCCcEEEccch-hhccCCCCCCCCccHHHHHHHhhh
Q psy3124 188 DVLTAYGYDGDNTPFVFGSAL-LALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~-~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++.+.++ .++++++||+ ++ .+++++++.|..
T Consensus 169 ~~~~~~~----~~~~~e~SAk~~~----------~gv~~lf~~l~~ 200 (205)
T 1gwn_A 169 NMAKQIG----AATYIECSALQSE----------NSVRDIFHVATL 200 (205)
T ss_dssp HHHHHHT----CSEEEECCTTTCH----------HHHHHHHHHHHH
T ss_pred HHHHHcC----CCEEEEeeeccCC----------cCHHHHHHHHHH
Confidence 5555554 2689999998 57 799999988865
No 156
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.66 E-value=4.6e-16 Score=140.12 Aligned_cols=153 Identities=22% Similarity=0.299 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCC--------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPG-------- 117 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG-------- 117 (463)
.+|+++|++|+|||||+++|++..... +...|+|.+.....+ . .+.++||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR----------------GKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS----------------SSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc----------------CCCCCccceeEEEec--C--CEEEEECCCccccccCC
Confidence 589999999999999999997642110 111233333332333 2 689999999
Q ss_pred ---hhhhHHHHHhh----cccCCEEEEEEeCCCC-----------CcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHH
Q psy3124 118 ---HADYIKNMISG----ASQMDGAIVVVAASEG-----------QMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIM 179 (463)
Q Consensus 118 ---h~~f~~~~~~~----~~~aD~ailVVda~~g-----------~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~ 179 (463)
++.|...+... +..+++++.|+|+... ...+..+.+..+...++| +++|+||+|+.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 56665444333 5567888888887642 112233445556667888 88999999998543
Q ss_pred HHHHHHHHHHHHHcCCCCC--CCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 180 ELVELEVRDVLTAYGYDGD--NTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 180 ~~i~~~i~~~l~~~g~~~~--~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+++.++.+.++.... ..+++++||+++ .|++++++.|.+.+
T Consensus 139 ---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 139 ---QEVINFLAEKFEVPLSEIDKVFIPISAKFG----------DNIERLKNRIFEVI 182 (190)
T ss_dssp ---HHHHHHHHHHHTCCGGGHHHHEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhhhhhccCCcEEEEecCCC----------CCHHHHHHHHHHhc
Confidence 1233444444554211 146899999999 99999999987754
No 157
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=1.5e-16 Score=164.03 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=109.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh-hh--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA-DY-- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~-~f-- 121 (463)
..+|+++|.+|+|||||+++|++.... ......|.|.+.....+..++..+.|+||||+. ++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a---------------~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRA---------------IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBC---------------CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCC---------------ccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 379999999999999999999864110 011122555555555566678899999999998 54
Q ss_pred ------HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 122 ------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 122 ------~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
+..+...+..+|++|+|+|++++...+..+.+..+ .+.| +++|+||+|+.+.... +++.+++ +
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~~----~~~~~~~---~- 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKINE----EEIKNKL---G- 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCCH----HHHHHHH---T-
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccCH----HHHHHHh---c-
Confidence 24455677889999999999988766655555443 3666 8899999999743111 2233322 2
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
..+|++++||+++ .|+++|++.|...+
T Consensus 377 --~~~~~i~iSAktg----------~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 --TDRHMVKISALKG----------EGLEKLEESIYRET 403 (482)
T ss_dssp --CSTTEEEEEGGGT----------CCHHHHHHHHHHHT
T ss_pred --CCCcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 2368999999999 99999999998754
No 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.66 E-value=2.7e-16 Score=140.32 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=96.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
.+..+|+++|..++|||||+++|++.... +. ....+... .....+......+.++||||++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~------------~~---~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQ------------VL---EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCC------------CC---SSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC------------Cc---CCCcceeE-EEEEEECCEEEEEEEEECCCCchh-
Confidence 46789999999999999999999764111 00 00111111 112223223356789999999873
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHHHHHH-HHHHHH------cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQTREH-LLLSKQ------IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~qt~e~-l~~~~~------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..++.+|++++|+|+++....+..+. +..+.. .++| +++|.||+|+.+........+++.++.+..+
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~- 141 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPRVVGDARARALXADMK- 141 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccCcCCHHHHHHHHHhhc-
Confidence 34567999999999987443222222 112222 2556 8899999999411000001123334444432
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
.+|++++||+++ .+++++++.|...
T Consensus 142 ---~~~~~~~Sa~~~----------~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 142 ---RCSYYETXATYG----------LNVDRVFQEVAQK 166 (178)
T ss_dssp ---SEEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred ---CCeEEEEecccc----------CCHHHHHHHHHHH
Confidence 368999999999 9999999988763
No 159
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.46 E-value=9e-18 Score=153.81 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=102.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEe--eEEEEecCCeeEEEEeCCChhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINI--AHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPGh~~ 120 (463)
+..++|+++|++|+|||||+++|++...... ....+.+. ....+......+.++||||+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4578999999999999999999975321100 00001111 1112222344567999999999
Q ss_pred hHHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeccCcccHHHH-H---------HHHHHH
Q psy3124 121 YIKNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQI--GIDNVVVYVNKADLVDREIM-E---------LVELEV 186 (463)
Q Consensus 121 f~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~l--~ip~iivvvNKiD~~~~~~~-~---------~i~~~i 186 (463)
|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.... + ...++.
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 988888888999999999999876432222 233333333 667 8899999999743211 1 011222
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.++.+..+ ..|++++||+++ .|++++++.|.+
T Consensus 170 ~~~~~~~~----~~~~~~vSA~~g----------~gi~~l~~~l~~ 201 (204)
T 3th5_A 170 LAMAKEIG----AVKYLECSALTQ----------RGLKTVFDEAIR 201 (204)
Confidence 23333322 138999999999 899999988765
No 160
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.64 E-value=4.6e-16 Score=162.22 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=110.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
+..++|+++|.+++|||||+++|++... ... ..|+......+...+..+.|+||||+++|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~------------~~~-------~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS------------VTT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC------------CCC-------CCCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC------------CCc-------CCccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 4568999999999999999999976410 000 113333334566678899999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 123 KNMISGASQMDGAIVVVAASEGQMPQ-TREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 123 ~~~~~~~~~aD~ailVVda~~g~~~q-t~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
..+...+..+|++|+|+|+++....+ ..+.+..... .++| +|+|+||+|+.+....++ +.+.+.......
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~ 455 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPHE----IQEKLGLTRIRD 455 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCCHHH----HHHHTTCTTCCS
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCCHHH----HHHHhchhhhhc
Confidence 88888899999999999998864322 2222222222 3667 889999999975322222 222222111222
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
..++++++||+++ .|+++++++|.+.+.
T Consensus 456 ~~~~~~~~SA~~g----------~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 456 RNWYVQPSCATSG----------DGLYEGLTWLTSNYK 483 (497)
T ss_dssp SCEEEEECBTTTT----------BTHHHHHHHHHHHCC
T ss_pred CCeEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 3468999999999 999999999988654
No 161
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=2.9e-15 Score=140.85 Aligned_cols=162 Identities=12% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh---
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH--- 118 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh--- 118 (463)
....++|+++|++|+|||||+++|++.... .......++|.+.....+.+.+..+.|+||||.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVF--------------HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCS--------------CC-------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcC--------------ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 345799999999999999999999864111 011112245555555566778889999999994
Q ss_pred --------hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHH-----HcCCCeEEEEEeccCcccHHHHHHH---
Q psy3124 119 --------ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSK-----QIGIDNVVVYVNKADLVDREIMELV--- 182 (463)
Q Consensus 119 --------~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~-----~l~ip~iivvvNKiD~~~~~~~~~i--- 182 (463)
+.+...+......+|++|+|+|++... ....+.+..+. ....| +++|+||+|+.+...+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~ 169 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLRE 169 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC-----------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHh
Confidence 345555556667889999999997533 33333333322 23345 8899999999854433322
Q ss_pred -HHHHHHHHHHcCCCCCCCcEEEccch-----hhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 183 -ELEVRDVLTAYGYDGDNTPFVFGSAL-----LALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 183 -~~~i~~~l~~~g~~~~~~pvi~~Sa~-----~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+.++++++.++. .++++++. .. .++.+|++.+...+
T Consensus 170 ~~~~l~~l~~~~~~-----~~~~~~~~~~~~~~~----------~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 170 APEDIQDLMDIFGD-----RYCALNNKATGAEQE----------AQRAQLLGLIQRVV 212 (239)
T ss_dssp -CHHHHHHHHHHSS-----SEEECCTTCCHHHHH----------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCC-----EEEEEECCCCccccH----------HHHHHHHHHHHHHH
Confidence 2356777777663 35555443 22 57888888876644
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=2.7e-16 Score=161.56 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=101.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK 123 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~ 123 (463)
..++|+++|++|+|||||+++|++..... .....|.|.+.....+..++..+.|+||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---------------v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI---------------VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC---------------CSCCTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc---------------ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 35789999999999999999998642110 001124444443334556788999999999877532
Q ss_pred --------HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC
Q psy3124 124 --------NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 124 --------~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~ 195 (463)
.+...+..+|++++|+|++++...+..+.+..+. ..| +++|+||+|+.+..... .++. +
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~~--------~~~~--~ 354 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLIT--------SLEY--P 354 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGST--------TCCC--C
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhhH--------HHHH--h
Confidence 2344677899999999999988777766655543 345 88999999998543221 1111 1
Q ss_pred CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 196 DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 196 ~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
. ...|++++||+++ .|+++|++.|.+.+..
T Consensus 355 ~-~~~~~i~iSAktg----------~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 355 E-NITQIVHTAAAQK----------QGIDSLETAILEIVQT 384 (462)
T ss_dssp T-TCCCEEEEBTTTT----------BSHHHHHHHHHHHHTT
T ss_pred c-cCCcEEEEECCCC----------CCHHHHHHHHHHHHhc
Confidence 1 2468999999999 9999999999886544
No 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.62 E-value=2.3e-15 Score=147.99 Aligned_cols=159 Identities=14% Similarity=0.081 Sum_probs=106.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe--eEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR--HYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPGh~~f 121 (463)
...+|+++|.+|+|||||+++|++..... . ..+.+.+.....+..++. .+.++||||+++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~------------~-----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 216 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPG------------E-----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCC------------S-----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCc------------c-----cCCcccceeEEEEEECCEEEEEEEEeCCCchhh
Confidence 46899999999999999999997541100 0 011122222223333444 4559999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeccCcccHH-HHHHH---------HHHHH
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQMPQTR--EHLLLSKQI--GIDNVVVYVNKADLVDRE-IMELV---------ELEVR 187 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~~qt~--e~l~~~~~l--~ip~iivvvNKiD~~~~~-~~~~i---------~~~i~ 187 (463)
.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.. ..+.+ .++..
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 88777888999999999999875432222 222333333 677 88999999997432 11111 12344
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++.+..++ .|++++||+++ .|++++++.|...+
T Consensus 296 ~~~~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 296 AMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHcCC----cEEEEecCCCC----------cCHHHHHHHHHHHH
Confidence 55555542 48999999999 99999999987644
No 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=2.4e-15 Score=135.43 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=98.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe-----cCCeeEEEEeCCChh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS-----TNTRHYAHTDCPGHA 119 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-----~~~~~i~liDtPGh~ 119 (463)
..+|+++|.+|+|||||+++|++..... ..+....+.++.....+. .....+.++||||++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~--------------~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSD--------------LGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCcc--------------CCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 3689999999999999999997631100 000011122222222221 135578999999999
Q ss_pred hhHHHHHhhcccCCEEEEEEeCCCCC--cHHHHHHHHHHHH--cCCCeEEEEEeccCcccHHHHHHHHHH-HHHHHHHcC
Q psy3124 120 DYIKNMISGASQMDGAIVVVAASEGQ--MPQTREHLLLSKQ--IGIDNVVVYVNKADLVDREIMELVELE-VRDVLTAYG 194 (463)
Q Consensus 120 ~f~~~~~~~~~~aD~ailVVda~~g~--~~qt~e~l~~~~~--l~ip~iivvvNKiD~~~~~~~~~i~~~-i~~~l~~~g 194 (463)
+|.......++.+|++++|+|.+++. +....+.+..+.. .++| +++|.||+|+.+.........+ ..++.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 98765555667899999999998753 2222333333332 2566 8889999999865433222222 222222222
Q ss_pred CCCCCCcEEEccchhhccCCCCCCCCc-cHHHHHHHhhhcCC
Q psy3124 195 YDGDNTPFVFGSALLALQGDSSELGEP-SIHRLLDALDKHIP 235 (463)
Q Consensus 195 ~~~~~~pvi~~Sa~~~~~~~~~~~~~~-~i~~Ll~~L~~~l~ 235 (463)
+. ...+++++||+++ . ++++|++.|.+.++
T Consensus 147 ~~-~~~~~~~~Sa~~~----------~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 147 FP-AIRDYHFVNATEE----------SDALAKLRKTIINESL 177 (184)
T ss_dssp SC-EEEEEEECCTTSC----------CHHHHHHHHHHHHHHH
T ss_pred Cc-chhheEEEecccC----------chhHHHHHHHHHHHHh
Confidence 21 0013899999998 6 89999988876443
No 165
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=9.3e-15 Score=134.87 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=97.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh-
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY- 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f- 121 (463)
....+|+++|.+++|||||+++|++.... + ... ....|.+.......+......+.++||+|.+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~-----~------~~~--~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~ 101 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDS-----M------DSD--CEVLGEDTYERTLMVDGESATIILLDMWENKGEN 101 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCT-----T------CCC-----CCTTEEEEEEEETTEEEEEEEECCTTTTHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-----C------CCc--CCccceeeEEEEEEECCeeeEEEEeecCCCcchh
Confidence 45689999999999999999999743110 0 000 001222222222223222335678999998773
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
........+.+|++|+|+|.++... ....+.+..+.. .++| +|+|.||+|+.+..... .++...+....+
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~--~~e~~~~a~~~~-- 176 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVS--VSEGRACAVVFD-- 176 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSC--HHHHHHHHHHHT--
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEe--HHHHHHHHHHcC--
Confidence 2223334577999999999986322 122222232332 2677 89999999997421111 112222333333
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 177 ---~~~~e~SAk~g----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ---CKFIETSAAVQ----------HNVKELFEGIVRQV 201 (211)
T ss_dssp ---CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 67999999999 99999999887644
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.60 E-value=5.5e-15 Score=147.46 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCCh------
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGH------ 118 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh------ 118 (463)
...|+++|++|+|||||+++|++.... .+...+.|.+.....+..++..+.++||||+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~----------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~ 242 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK----------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP 242 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc----------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH
Confidence 445999999999999999999865221 1112234544444455667788999999997
Q ss_pred ---hhhHHHHHhhcccCCEEEEEEeCCCCC--c-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 119 ---ADYIKNMISGASQMDGAIVVVAASEGQ--M-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 119 ---~~f~~~~~~~~~~aD~ailVVda~~g~--~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
+.| ..+...+..+|.+++|+|++++. . .+.......+.. .+.| +++|.||+|+.+.. .......+..+
T Consensus 243 ~lve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~-~~~~~~~~~~l 319 (364)
T 2qtf_A 243 QIVDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGD-LYKKLDLVEKL 319 (364)
T ss_dssp GGHHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSC-HHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCch-HHHHHHHHHHH
Confidence 223 34556788999999999998764 2 222222233333 3566 88999999998533 12212233233
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p 237 (463)
...+.. ...+++++||+++ .|+++|++.|...+..|
T Consensus 320 ~~~l~~--~~~~~~~~SA~~g----------~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 320 SKELYS--PIFDVIPISALKR----------TNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHCS--CEEEEEECBTTTT----------BSHHHHHHHHHHHHHHH
T ss_pred HHHhcC--CCCcEEEEECCCC----------cCHHHHHHHHHHHhccc
Confidence 333311 1356899999999 99999999998755433
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=1.6e-14 Score=132.45 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=105.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD-- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~-- 120 (463)
.+..+|+++|++|+|||||+++|++.... .......|.+.......+. + .+.++||||+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~ 86 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAE 86 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEEE--T-TEEEEECCCCC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeEEEEec--C-CEEEEECcCCcccc
Confidence 34678999999999999999999764210 0001122444333223232 2 678999999842
Q ss_pred --------hHHH---HHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 121 --------YIKN---MISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 121 --------f~~~---~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
|... .......+|.+++|+|+..+......+....+...++| ++++.||+|+.+....+.....++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 87 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCchhHHHHHHHHHHH
Confidence 3222 22233568999999999988766555555666778888 77889999998654333323455666
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+...+ ..++++++||+++ .+++++++.|.+.+
T Consensus 166 ~~~~~---~~~~~~~~Sal~~----------~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 166 VLAFN---GDVQVETFSSLKK----------QGVDKLRQKLDTWF 197 (210)
T ss_dssp HGGGC---SCEEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHhcC---CCCceEEEeecCC----------CCHHHHHHHHHHHH
Confidence 65543 2367899999999 89999999988754
No 168
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=1.3e-15 Score=150.45 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-eeEEEEeCCChhh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-RHYAHTDCPGHAD---- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPGh~~---- 120 (463)
.+|+++|.+++|||||+++|++........ ...|.......+...+ ..+.++||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~----------------~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADY----------------HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESST----------------TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccC----------------CccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 479999999999999999997642111100 1123322223344443 7899999999754
Q ss_pred ---hHHHHHhhcccCCEEEEEEeCCC---C-CcHHHHHHHHHHHH-----cCCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 121 ---YIKNMISGASQMDGAIVVVAASE---G-QMPQTREHLLLSKQ-----IGIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 121 ---f~~~~~~~~~~aD~ailVVda~~---g-~~~qt~e~l~~~~~-----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
+....+..+..+|++|+|+|++. . ...+....+..+.. .++| +++|+||+|+.+... .+.+
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e------~~~~ 295 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAE------NLEA 295 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHH------HHHH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHH------HHHH
Confidence 34555666677999999999975 2 22333333444444 3567 789999999985421 2222
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+.+.++. ..+++++||+++ .++++|++.|...+..
T Consensus 296 l~~~l~~---~~~v~~iSA~tg----------~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 296 FKEKLTD---DYPVFPISAVTR----------EGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHCCS---CCCBCCCSSCCS----------STTHHHHHHHHHHHTS
T ss_pred HHHHhhc---CCCEEEEECCCC----------cCHHHHHHHHHHHHhh
Confidence 3333321 267999999999 8999999999876643
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=3.1e-14 Score=142.04 Aligned_cols=156 Identities=22% Similarity=0.181 Sum_probs=102.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|++|+|||||+++|++.....+. ..+.|.+.....+...+..+.++||||+.++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----------------CTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 35679999999999999999999764211110 01223223333444457789999999985531
Q ss_pred --------HHHHhh-cccCCEEEEEEeCCCCC--cHH-HHHHHHHHHH-c-CCCeEEEEEeccCcccHHHHHHHHHHHHH
Q psy3124 123 --------KNMISG-ASQMDGAIVVVAASEGQ--MPQ-TREHLLLSKQ-I-GIDNVVVYVNKADLVDREIMELVELEVRD 188 (463)
Q Consensus 123 --------~~~~~~-~~~aD~ailVVda~~g~--~~q-t~e~l~~~~~-l-~ip~iivvvNKiD~~~~~~~~~i~~~i~~ 188 (463)
...... ...+|.+++|+|++.+. ..+ ..+.+..+.. . +.| +++|+||+|+.+...++ ++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~~~----~~~~ 303 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEENIK----RLEK 303 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHHHH----HHHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHHHH----HHHH
Confidence 122223 34699999999987643 222 2333333332 3 677 88999999998654433 2333
Q ss_pred HHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 189 VLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 189 ~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.++.. .+|++++||+++ .|+++|+++|...+
T Consensus 304 ~~~~~-----~~~~~~iSA~~g----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 304 FVKEK-----GLNPIKISALKG----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHT-----TCCCEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHhc-----CCCeEEEeCCCC----------cCHHHHHHHHHHHH
Confidence 44433 368999999999 99999999987754
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=3.2e-15 Score=138.13 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=85.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|++|+|||||+++|++...... . .....++. .......+.++||||+++|.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~--------~-------~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--------V-------VSQEPLSA-----ADYDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB--------C-------CCSSCEEE-----TTGGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe--------e-------eecCceEE-----EEeeCceEEEEECCCcHHHH
Confidence 3568999999999999999999976421100 0 00011111 11145678999999999987
Q ss_pred HHHHhhccc----CCEEEEEEeCC-CC-CcHHHHHHHHHHHH-------cCCCeEEEEEeccCcccHHHHHHH----HHH
Q psy3124 123 KNMISGASQ----MDGAIVVVAAS-EG-QMPQTREHLLLSKQ-------IGIDNVVVYVNKADLVDREIMELV----ELE 185 (463)
Q Consensus 123 ~~~~~~~~~----aD~ailVVda~-~g-~~~qt~e~l~~~~~-------l~ip~iivvvNKiD~~~~~~~~~i----~~~ 185 (463)
..+...+.. +|++++|+|+. .. .+....+++..... .++| +++|+||+|+.+....+.+ .++
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~~ 148 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALESE 148 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHHH
Confidence 776666655 89999999998 22 23333333333222 3677 8999999999854333333 333
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhh
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
+..+....+ .+++++||+++
T Consensus 149 ~~~~~~~~~-----~~~~~~Sa~~~ 168 (218)
T 1nrj_B 149 IQKVIERRK-----KSLNEVERKIN 168 (218)
T ss_dssp HHHHHHHHH-----HHHHC------
T ss_pred HHHHHHHHh-----ccccccccccc
Confidence 444433332 56889999987
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.56 E-value=7.9e-15 Score=146.20 Aligned_cols=175 Identities=17% Similarity=0.102 Sum_probs=109.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccc-----------cCCChhh---hhcCceEEeeEE-------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQ-----------IDRAPEE---KARGITINIAHV------- 101 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~-----------~d~~~~e---~~~g~Ti~~~~~------- 101 (463)
....+|+++|++|+|||||+++|+......|..-...... -+....+ ...+..+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 3467899999999999999999987765544321110000 0000000 011221110000
Q ss_pred ---------EEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 102 ---------EYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 102 ---------~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
.++..+..+.|+||||..+-. ...+..+|.+++|+|+..+...+... ...+.+| +++|+||+|
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p-~ivVlNK~D 228 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK----KGVLELA-DIVVVNKAD 228 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGC-SEEEEECCC
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcC-CEEEEECCC
Confidence 113357889999999965422 22347899999999998765332211 1113456 678999999
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCC--CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 173 LVDREIMELVELEVRDVLTAYGYD--GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g~~--~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+.+....+...+++.+.+...+.. ....|++++||+++ .|+++|++.|..+++
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEG----------RGLAELWDTVERHRQ 283 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT----------BSHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 987666666666777766554321 12478999999999 999999999987553
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=145.32 Aligned_cols=174 Identities=17% Similarity=0.208 Sum_probs=90.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe--eEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR--HYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPGh~~f 121 (463)
..++|+++|++|+|||||+++|.+...-... .......+...+++++.....+...+. .++++||||+.++
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~-------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPER-------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC-------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 4688999999999999999998653111000 011111122233444333333333333 6899999999432
Q ss_pred HH-----------------HHHhhcc----------cCCEEEEEEeC-CCCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 122 IK-----------------NMISGAS----------QMDGAIVVVAA-SEGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 122 ~~-----------------~~~~~~~----------~aD~ailVVda-~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
.. ....... .+|+++++|++ .++......+.+..+ ..++| +|+|+||+|+
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~p-iIlV~NK~Dl 186 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVN-IVPVIAKADT 186 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SC-EEEEEECCSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCC-EEEEEECCCC
Confidence 21 1111111 13578888886 556655555544443 35677 8999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCCCC
Q psy3124 174 VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPV 238 (463)
Q Consensus 174 ~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~p~ 238 (463)
.+...+...++++.+.++..+ +|++++||+++.+ .+.+..+++.|...+|.+.
T Consensus 187 ~~~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~-------~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 187 LTLKERERLKKRILDEIEEHN-----IKIYHLPDAESDE-------DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp SCHHHHHHHHHHHHHHTTCC------CCSCCCC----------------CHHHHHHHHHTCSCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc-------chhHHHHHHHHHhcCCCCE
Confidence 876655555566666655443 6899999998722 1455677777777666543
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.55 E-value=2.5e-14 Score=154.29 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=80.7
Q ss_pred eeEEEEeCCChhh---hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHH-HHHHcCCCeEEEEEeccCcccHH------
Q psy3124 108 RHYAHTDCPGHAD---YIKNMISGASQMDGAIVVVAASEGQMPQTREHLL-LSKQIGIDNVVVYVNKADLVDRE------ 177 (463)
Q Consensus 108 ~~i~liDtPGh~~---f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~-~~~~l~ip~iivvvNKiD~~~~~------ 177 (463)
..+.|+||||+.+ ....+...+..+|++|+|+|++.+......+.+. .+...+.| +++|+||+|+.+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGGCSSTTC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccccccChhh
Confidence 4699999999766 3455566778899999999999887777666664 34456777 88999999997432
Q ss_pred --HHHHHHHHHH----HHHHHc----CCCCCCCcEEEccchhhcc----CCCCCCCCccHHHHHHHhhhcC
Q psy3124 178 --IMELVELEVR----DVLTAY----GYDGDNTPFVFGSALLALQ----GDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 178 --~~~~i~~~i~----~~l~~~----g~~~~~~pvi~~Sa~~~~~----~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.++...+.+. ..+... |+.....+++++||+.++. ....-..+.|+++|.+.|...+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 2333333333 223222 1111235799999993211 1111112278888888877644
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=2.5e-15 Score=157.99 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=101.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEee------EE--EEecCCeeEEEEe
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIA------HV--EYSTNTRHYAHTD 114 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~------~~--~~~~~~~~i~liD 114 (463)
....+|+++|.+|+|||||+++|++...... .....|.++... .. ........+.++|
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~D 104 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWD 104 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEEE
Confidence 4578999999999999999999986522110 001112222211 00 1112357899999
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC--CCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG--IDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~--ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
|||++.|.......++.+|++|+|+|++.. ......+..+...+ .| +|+|+||+|+.+..... .+++++.+..
T Consensus 105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~--~~~~~~~~~~ 179 (535)
T 3dpu_A 105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIE--QKKINERFPA 179 (535)
T ss_dssp CCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCC--HHHHHHHCGG
T ss_pred CCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccC--HHHHHHHHHh
Confidence 999998877666677789999999999864 34445555565554 77 88999999997432111 1344445444
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
.+ .|++++||+++ .|+++|++.|...+..
T Consensus 180 ~~-----~~~~~vSA~~g----------~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 180 IE-----NRFHRISCKNG----------DGVESIAKSLKSAVLH 208 (535)
T ss_dssp GT-----TCEEECCC---------------CTTHHHHHHHHHTC
T ss_pred cC-----CceEEEecCcc----------cCHHHHHHHHHHHHhc
Confidence 43 57999999999 8888888888775543
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=1.9e-14 Score=137.29 Aligned_cols=117 Identities=11% Similarity=0.065 Sum_probs=77.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh-
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY- 121 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f- 121 (463)
+..++|+++|++|+|||||+++|++.... ......+.|.......+...+..++|+||||+.+|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV---------------RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCS---------------CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 45799999999999999999999863110 00112234444455566778889999999999765
Q ss_pred ------HHHHHhhc--ccCCEEEEEEeCCCC-CcHHHHHHHHHHHHc-C---CCeEEEEEeccCcc
Q psy3124 122 ------IKNMISGA--SQMDGAIVVVAASEG-QMPQTREHLLLSKQI-G---IDNVVVYVNKADLV 174 (463)
Q Consensus 122 ------~~~~~~~~--~~aD~ailVVda~~g-~~~qt~e~l~~~~~l-~---ip~iivvvNKiD~~ 174 (463)
...+...+ ..+|++++|+|.+.. ......+.+..+... + ..++++|+||+|+.
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 22222222 368999999887653 333444445444432 3 12488999999996
No 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.53 E-value=4.7e-14 Score=127.98 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=93.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
....+|+++|.+++|||||+++|++.... + .. .....|.+.......+......+.++||+|.+...
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~-----~------~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDS-----M------DS--DXEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCC-----C------------GGGCTTEEEEEEEETTEEEEEEEECCCCC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCC-----c------Cc--cccccceeEEEEEEEECCeEEEEEEEEeccCcchh
Confidence 34689999999999999999999753100 0 00 00112333222222232223356789999976521
Q ss_pred H-HHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCC
Q psy3124 123 K-NMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ----IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYD 196 (463)
Q Consensus 123 ~-~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~----l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~ 196 (463)
. ......+.+|++++|.|.++... ....+.+..+.. .++| +++|.||+|+.+..... .++...+....+
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~--~~~~~~~a~~~~-- 145 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVS--VSEGRAXAVVFD-- 145 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSC--HHHHHHHHHHTT--
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhcccccc--HHHHHHHHHHhC--
Confidence 1 11223456899999999986322 112222222322 2677 88999999997421111 112222223332
Q ss_pred CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 197 GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 197 ~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++++++||+++ .+++++++.|...+
T Consensus 146 ---~~~~e~SA~~g----------~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 146 ---XKFIETSAAVQ----------HNVKELFEGIVRQV 170 (192)
T ss_dssp ---CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CceEEeccccC----------CCHHHHHHHHHHHH
Confidence 57999999999 99999999887644
No 177
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=3.4e-14 Score=140.83 Aligned_cols=174 Identities=14% Similarity=0.080 Sum_probs=103.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcccccccc-----------ccCCChhhh----hcCceEEeeE-------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFD-----------QIDRAPEEK----ARGITINIAH------- 100 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~-----------~~d~~~~e~----~~g~Ti~~~~------- 100 (463)
.....|+++|++|+|||||++.|++.....|..-..... ..+....+. .++.-.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 346789999999999999999998776544321111000 000000000 0111000000
Q ss_pred --------EEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 101 --------VEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 101 --------~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
..+.+.+..++|+||||+.++...+ ...+|.+++|+|+..+...+.... ...++| .++|+||+|
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p-~ivv~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVA-DLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHC-SEEEECCCC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhccc-CEEEEECCC
Confidence 0112457889999999987765443 478999999999976543221111 113457 678999999
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCC--CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 173 LVDREIMELVELEVRDVLTAYGYD--GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g~~--~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+.+...+....+++++.+..++.. ....|++++||+++ .|+++|++.|...+
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEK----------RGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 987655555555666666554321 11357899999999 99999999987744
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.52 E-value=1.7e-14 Score=141.15 Aligned_cols=119 Identities=16% Similarity=0.061 Sum_probs=72.8
Q ss_pred CCeeEEEEeCCChhh-------------hHHHHHhhcccCCEEEEEEeC-CCCCcHHH-HHHHHHHHHcCCCeEEEEEec
Q psy3124 106 NTRHYAHTDCPGHAD-------------YIKNMISGASQMDGAIVVVAA-SEGQMPQT-REHLLLSKQIGIDNVVVYVNK 170 (463)
Q Consensus 106 ~~~~i~liDtPGh~~-------------f~~~~~~~~~~aD~ailVVda-~~g~~~qt-~e~l~~~~~l~ip~iivvvNK 170 (463)
....+.|+||||+.+ +...+..++..+|++++|+|+ +.+...+. .+.+..+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 457899999999753 455566778899999999997 55544333 3555566667888 8899999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 171 ADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 171 iD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+|+.+... .. .+.++.. ......+++++|+..+.+.+ ...++.++++.+..+++.
T Consensus 208 ~Dl~~~~~--~~----~~~~~~~-~~~~~~~~~~v~~~sa~~~~----~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT--DA----MEVLTGR-VIPLTLGFIGVINRSQEDII----AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC--CC----HHHHTTS-SSCCTTCEEECCCCCHHHHS----SSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch--HH----HHHHhCC-CccCCCCeEEEecCChhhhc----cCCCHHHHHHHHHHHHhC
Confidence 99984322 01 1122211 11111345555544432111 116888898888776643
No 179
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.52 E-value=2e-14 Score=139.44 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=100.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHh-cCccc-ccccc---c----------c---C---CChh----h------hh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAK-IGKSK-FITFD---Q----------I---D---RAPE----E------KA 91 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~-~g~~~-~~~~~---~----------~---d---~~~~----e------~~ 91 (463)
...++|+++|.+++|||||+++|++.... .+... ..... . . . .... + +-
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999865321 10000 00000 0 0 0 0000 0 00
Q ss_pred ----cCceEEeeEEEEec-CCeeEEEEeCCChh-------------hhHHHHHhhcccCCEEE-EEEeCCCCCcHHHH-H
Q psy3124 92 ----RGITINIAHVEYST-NTRHYAHTDCPGHA-------------DYIKNMISGASQMDGAI-VVVAASEGQMPQTR-E 151 (463)
Q Consensus 92 ----~g~Ti~~~~~~~~~-~~~~i~liDtPGh~-------------~f~~~~~~~~~~aD~ai-lVVda~~g~~~qt~-e 151 (463)
.|++.+........ ....+.|+||||+. .+...+..++..+|.++ +|+|++.+...+.. +
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 22322221122222 24789999999963 34455566777888776 69999987766654 3
Q ss_pred HHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 152 HLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 152 ~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.+..+...+.| +++|+||+|+.+... ...+.++..+ ..+.....|++++||+++ .++++|++.|.
T Consensus 184 ~~~~~~~~~~~-~i~V~NK~Dl~~~~~--~~~~~~~~~~--~~~~~~~~~v~~~SA~~~----------~gi~~l~~~l~ 248 (299)
T 2aka_B 184 IAKEVDPQGQR-TIGVITKLDLMDEGT--DARDVLENKL--LPLRRGYIGVVNRSQKDI----------DGKKDITAALA 248 (299)
T ss_dssp HHHHHCTTCSS-EEEEEECGGGSCTTC--CCHHHHTTCS--SCCTTCEEECCCCCCBCT----------TSCBCHHHHHH
T ss_pred HHHHhCCCCCe-EEEEEEccccCCCCc--hHHHHHhCCc--CcCCCCcEEEECCChhhc----------cccccHHHHHH
Confidence 55555556777 889999999985322 0111111110 011111257889999998 77777777765
Q ss_pred h
Q psy3124 232 K 232 (463)
Q Consensus 232 ~ 232 (463)
.
T Consensus 249 ~ 249 (299)
T 2aka_B 249 A 249 (299)
T ss_dssp H
T ss_pred H
Confidence 4
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.52 E-value=6.1e-14 Score=127.77 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=99.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKN 124 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~ 124 (463)
.++|+++|+.|+|||||+++|++..... ......|.+.....+.+......+.++||||++.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 5899999999999999999998642110 00011122222233333222245678999999988655
Q ss_pred HHhhcccCCEEEEEEeCCCCCcH-HHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy3124 125 MISGASQMDGAIVVVAASEGQMP-QTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNT 200 (463)
Q Consensus 125 ~~~~~~~aD~ailVVda~~g~~~-qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 200 (463)
.......+|++++|+|+...... .....+..+.. .+.| +++++||+|+.+.... ..++.+.+....+ +
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~--~~~~a~~l~~~~~-----~ 142 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV--PTDEARAFAEKNN-----L 142 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS--CHHHHHHHHHHTT-----C
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCc--CHHHHHHHHHHcC-----C
Confidence 45556779999999999864322 22223332322 2455 8899999999742110 0123444454443 6
Q ss_pred cEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 201 PFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 201 pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++.+||+++ .+++++++.|...+
T Consensus 143 ~~~d~Sal~~----------~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 143 SFIETSALDS----------TNVEEAFKNILTEI 166 (199)
T ss_dssp EEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7899999998 89999988887643
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.52 E-value=8.4e-14 Score=133.41 Aligned_cols=178 Identities=12% Similarity=0.039 Sum_probs=101.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|++|+|||||+++|++.... ......+.|.+.....+...+..+.++||||+.++.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVV---------------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 45789999999999999999999864110 000112333333344566678899999999986652
Q ss_pred -------HHHHhh--cccCCEEEEEEeCCC-CCcHHHHHHHHHHHH-cC----CCeEEEEEeccCcccHH--HHHH----
Q psy3124 123 -------KNMISG--ASQMDGAIVVVAASE-GQMPQTREHLLLSKQ-IG----IDNVVVYVNKADLVDRE--IMEL---- 181 (463)
Q Consensus 123 -------~~~~~~--~~~aD~ailVVda~~-g~~~qt~e~l~~~~~-l~----ip~iivvvNKiD~~~~~--~~~~---- 181 (463)
..+... ...+|++++|+|++. .......+.+..+.. .+ .| +++|+||+|+.+++ .+++
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCGGGCCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCcCCCCHHHHHHH
Confidence 222222 236899999988764 344444455554433 24 35 89999999997432 2333
Q ss_pred HHHHHHHHHHH-cCCC----CCCCcEEEccchhhcc--CCCC---CCCCccHHHHHHHhhhcCCC
Q psy3124 182 VELEVRDVLTA-YGYD----GDNTPFVFGSALLALQ--GDSS---ELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 182 i~~~i~~~l~~-~g~~----~~~~pvi~~Sa~~~~~--~~~~---~~~~~~i~~Ll~~L~~~l~~ 236 (463)
..+++++.++. .++. ...+|+..+++..... .... -...+....|++.|...+..
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~ 245 (270)
T 1h65_A 181 RSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALN 245 (270)
T ss_dssp HHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhc
Confidence 23444444432 1221 1226777765542211 0000 01112245788877775443
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.50 E-value=6e-14 Score=136.52 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhHH---
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIK--- 123 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~--- 123 (463)
+|+++|..++|||||+.++.+..... .....+.|+......+. ...++.||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~---------------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL---------------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG---------------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC---------------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 48999999999999998875431100 00112333333222232 346799999999999953
Q ss_pred HHHhhcccCCEEEEEEeCCCCCcHHHHHHHH----HHHH--cCCCeEEEEEeccCcccHHHH----HHHHHHHHHHHHHc
Q psy3124 124 NMISGASQMDGAIVVVAASEGQMPQTREHLL----LSKQ--IGIDNVVVYVNKADLVDREIM----ELVELEVRDVLTAY 193 (463)
Q Consensus 124 ~~~~~~~~aD~ailVVda~~g~~~qt~e~l~----~~~~--l~ip~iivvvNKiD~~~~~~~----~~i~~~i~~~l~~~ 193 (463)
......+.++++|+|+|+++. +....+.+. .+.. -++| ++++.||+|+.+++.. ..+..+..+.+.+.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 345567899999999999986 444444332 2221 3567 8899999999854322 22333333333333
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
+++...++++.+||++. ++.+.+..+...+
T Consensus 143 ~~~~~~i~f~eTSAkd~-----------nV~eAFs~iv~~l 172 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFDH-----------SIYEAFSRIVQKL 172 (331)
T ss_dssp SCSCCCEEEECCCSSSS-----------HHHHHHHHHHTTS
T ss_pred cccccCceEEEeccCCC-----------cHHHHHHHHHHHH
Confidence 32223589999999863 5666666655533
No 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-14 Score=131.11 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=77.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYI 122 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 122 (463)
...++|+++|+.|+|||||+++|++..... .......+++. ......+.++||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-------------~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------------TVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-------------ccccCCCceee-------eecCCeEEEEECCCCchHH
Confidence 456899999999999999999997642100 00000111111 1145678999999998874
Q ss_pred HHHHhhc----ccCCEEEEEEeCCCCC--cHHHHHHHHHHHH-------cCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 123 KNMISGA----SQMDGAIVVVAASEGQ--MPQTREHLLLSKQ-------IGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 123 ~~~~~~~----~~aD~ailVVda~~g~--~~qt~e~l~~~~~-------l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
..+...+ ..+|++++|+|++... +....+.+..... .++| +++|+||+|+.+....+++.+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~~ 184 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALESE 184 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcCCCCHHHHHHHHHHH
Confidence 4443333 3489999999998221 1222233322211 3677 88999999998544444555555444
Q ss_pred HH
Q psy3124 190 LT 191 (463)
Q Consensus 190 l~ 191 (463)
+.
T Consensus 185 l~ 186 (193)
T 2ged_A 185 IQ 186 (193)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=2.2e-13 Score=137.28 Aligned_cols=83 Identities=22% Similarity=0.180 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEE--EEe-------------------
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHV--EYS------------------- 104 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~------------------- 104 (463)
++|+++|.+|+|||||+++|++.....+. ..+.|++.... .+.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~----------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN----------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 47999999999999999999865311111 01122221111 110
Q ss_pred cC---CeeEEEEeCCChhhhH-------HHHHhhcccCCEEEEEEeCCCC
Q psy3124 105 TN---TRHYAHTDCPGHADYI-------KNMISGASQMDGAIVVVAASEG 144 (463)
Q Consensus 105 ~~---~~~i~liDtPGh~~f~-------~~~~~~~~~aD~ailVVda~~g 144 (463)
.. ...+.|+||||+.+.. ...+..++.+|++++|+|+.++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 2468999999986531 2223456889999999999875
No 185
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.44 E-value=9.6e-14 Score=131.88 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=57.2
Q ss_pred cCCEEEEEEeCCCC--C-cHHHHHHHHHHH----HcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEE
Q psy3124 131 QMDGAIVVVAASEG--Q-MPQTREHLLLSK----QIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFV 203 (463)
Q Consensus 131 ~aD~ailVVda~~g--~-~~qt~e~l~~~~----~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi 203 (463)
.+|++|+|+|+++. . +....+.+..+. ..++| +++|.||+|+.+.... +++.++.... ..++++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v----~~~~~~~~~~----~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERYI----RDAHTFALSK----KNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHHH----HHHHHHHHTS----SSCCEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHHH----HHHHHHHHhc----CCCeEE
Confidence 68999999999875 2 333333333332 24677 8899999999765333 2444444332 136899
Q ss_pred EccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 204 FGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 204 ~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++||+++ .+++++++.|...
T Consensus 233 e~SAk~g----------~gv~elf~~l~~~ 252 (255)
T 3c5h_A 233 ETSARSN----------VNVDLAFSTLVQL 252 (255)
T ss_dssp ECBTTTT----------BSHHHHHHHHHHH
T ss_pred EEECCCC----------CCHHHHHHHHHHH
Confidence 9999999 9999999988753
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.43 E-value=9.5e-13 Score=130.70 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=95.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhh----------------hhcCceEEe----eEE--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEE----------------KARGITINI----AHV-- 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e----------------~~~g~Ti~~----~~~-- 101 (463)
+...|+++|++|||||||+++|++.....+..-... ..|..... .....-+.. ...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~--~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL--AVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCC----------------CCSTTCTTEEEECC--------
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE--eecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 467899999999999999999998654432211100 00100000 000111100 000
Q ss_pred ----------EEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Q psy3124 102 ----------EYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 102 ----------~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKi 171 (463)
.++..+..+.|+||||..+.. ......+|++++|+|+..+...+ .+.. ..+..| .++|+||+
T Consensus 151 ~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~-~ivVlNK~ 222 (349)
T 2www_A 151 VTRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQ---GIKR-GIIEMA-DLVAVTKS 222 (349)
T ss_dssp -CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSC-SEEEECCC
T ss_pred chHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHH---HhHH-HHHhcC-CEEEEeee
Confidence 112366789999999964322 22246799999999998764322 1111 224667 57889999
Q ss_pred CcccHHHHHHHHHHHHHHHHHcCC--CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 172 DLVDREIMELVELEVRDVLTAYGY--DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 172 D~~~~~~~~~i~~~i~~~l~~~g~--~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
|+.+.........++...++.... .....|++++||+++ .|+++|+++|...+
T Consensus 223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g----------~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSG----------EGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 998644333333444444432211 011368999999999 99999999987743
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.43 E-value=4.1e-13 Score=121.56 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=98.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCe--eEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTR--HYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPGh~~f 121 (463)
...+|+++|+.|+|||||+++|++..... +....++.+.....+..++. .+.++|+||+++|
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~----------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 91 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEECCCCcch
Confidence 45899999999999999999998652110 01112223332233334444 4557999999887
Q ss_pred HHHHHhhcccCCEEEEEEeCCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCC
Q psy3124 122 IKNMISGASQMDGAIVVVAASEGQM-PQTREHLLLSKQ---IGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDG 197 (463)
Q Consensus 122 ~~~~~~~~~~aD~ailVVda~~g~~-~qt~e~l~~~~~---l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~ 197 (463)
...+......+|.+++|+|...... ......+..+.. .+.| +++++||+|+.+.... ...+.+.+....+
T Consensus 92 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~--~~~~a~~l~~~~~--- 165 (191)
T 1oix_A 92 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV--PTDEARAFAEKNG--- 165 (191)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS--CHHHHHHHHHHTT---
T ss_pred hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc--CHHHHHHHHHHcC---
Confidence 6555555677899999999876322 111222222222 2445 8899999999742110 0123344444433
Q ss_pred CCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 198 DNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 198 ~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
++++.+||+++ .+++++++.|.+
T Consensus 166 --~~~ld~Sald~----------~~v~~l~~~l~~ 188 (191)
T 1oix_A 166 --LSFIETSALDS----------TNVEAAFQTILT 188 (191)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHH
Confidence 67899999999 899999998865
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.41 E-value=7.5e-13 Score=138.95 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=64.2
Q ss_pred eeEEEEeCCChhh-----------hHHHHHhhcccCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 108 RHYAHTDCPGHAD-----------YIKNMISGASQMDGAIVVVAASE-GQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 108 ~~i~liDtPGh~~-----------f~~~~~~~~~~aD~ailVVda~~-g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
..++||||||+.+ |...+...+..+|++++|+|+.+ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCccC
Confidence 4689999999875 66677777889999999999988 5778888888887777777 889999999997
Q ss_pred HHHHHHHHHHHH
Q psy3124 176 REIMELVELEVR 187 (463)
Q Consensus 176 ~~~~~~i~~~i~ 187 (463)
.+.+..+...+.
T Consensus 233 ~~el~~~~~~l~ 244 (550)
T 2qpt_A 233 TQQLMRVYGALM 244 (550)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 666665555554
No 189
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.40 E-value=4.8e-13 Score=123.69 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=97.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC----hhh-hhcCceEEe-eE---EEE----------e
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA----PEE-KARGITINI-AH---VEY----------S 104 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~----~~e-~~~g~Ti~~-~~---~~~----------~ 104 (463)
...+|+++|++|+|||||+++|+.......+..... .|.. ... ...|.+... .. ..+ .
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~---~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML---GDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE---CSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe---cCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHh
Confidence 467899999999999999999987643221111100 0110 011 112333211 10 011 3
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHH--HHHHH
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDRE--IMELV 182 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~--~~~~i 182 (463)
..+..+.++||||...- +. ..-..++.+++|+|+..+...+. ......+.| +++|+||+|+.+.. ..+.
T Consensus 106 ~~~~d~iiidt~G~~~~-~~--~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~- 176 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLIC-PV--DFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVA-DLIVINKVALAEAVGADVEK- 176 (221)
T ss_dssp GTTCSEEEEEEEEBSSG-GG--GCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTC-SEEEEECGGGHHHHTCCHHH-
T ss_pred cCCCCEEEEeCCCCCCC-Cc--hhccccCcEEEEEeCCCcchhhh----hhhhhhhcC-CEEEEecccCCcchhhHHHH-
Confidence 35678999999994110 00 00124688999999988753221 223335677 67899999997431 2233
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 183 ELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 183 ~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+.+.++..+ ...|++++||+++ .++++++++|...+.
T Consensus 177 ---~~~~~~~~~---~~~~i~~~Sa~~g----------~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 177 ---MKADAKLIN---PRAKIIEMDLKTG----------KGFEEWIDFLRGILN 213 (221)
T ss_dssp ---HHHHHHHHC---TTSEEEECBTTTT----------BTHHHHHHHHHHHHC
T ss_pred ---HHHHHHHhC---CCCeEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 333444433 2478999999999 999999999987543
No 190
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=2.2e-11 Score=115.54 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=73.1
Q ss_pred eeEEEEeCCChhhhHH------HHHhhcccCCEEEEEEeCCCCCcHHHHH-H----HHHHHHcCCCeEEEEEeccCcccH
Q psy3124 108 RHYAHTDCPGHADYIK------NMISGASQMDGAIVVVAASEGQMPQTRE-H----LLLSKQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 108 ~~i~liDtPGh~~f~~------~~~~~~~~aD~ailVVda~~g~~~qt~e-~----l~~~~~l~ip~iivvvNKiD~~~~ 176 (463)
..+.|+||||..++.. .+...+.. +.+++|+|+.......... . +......++| +++|+||+|+.+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCC-eEEEEeccccccc
Confidence 4799999999887642 23345566 8999999987665433322 1 1223345788 7799999999865
Q ss_pred HHHHHHHHHHH---H---H------------------HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 177 EIMELVELEVR---D---V------------------LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 177 ~~~~~i~~~i~---~---~------------------l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
...+++.+.++ . . ++.++ ...+++++||+++ .++++|+++|..
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~SA~~~----------~gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL---PPVRVLYLSAKTR----------EGFEDLETLAYE 253 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS---CCCCCEECCTTTC----------TTHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc---CcccceEEEecCc----------ccHHHHHHHHHH
Confidence 43332222211 1 1 23333 1357899999999 999999999877
Q ss_pred cC
Q psy3124 233 HI 234 (463)
Q Consensus 233 ~l 234 (463)
.+
T Consensus 254 ~~ 255 (262)
T 1yrb_A 254 HY 255 (262)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.35 E-value=3e-12 Score=129.38 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhh----
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHAD---- 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~---- 120 (463)
..|+++|++|||||||+++|++.........+ ......... +... ...++++|+||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~f--------------tTl~p~~G~--V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPF--------------TTLSPNLGV--VEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTT--------------CSSCCEEEE--EECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCccc--------------ceecceeeE--EEecCcceEEEEeccccccchhh
Confidence 45899999999999999999765221111000 011112222 2333 36799999999743
Q ss_pred ---hHHHHHhhcccCCEEEEEEeCCCCCcHHHH----HHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH
Q psy3124 121 ---YIKNMISGASQMDGAIVVVAASEGQMPQTR----EHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192 (463)
Q Consensus 121 ---f~~~~~~~~~~aD~ailVVda~~g~~~qt~----e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~ 192 (463)
+.......+..+|.+++|+|+......+.. +...++.. ...| .++++||+|+..... .+++.+.++.
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~~~~~----~~~l~~~l~~ 296 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEEEA----VKALADALAR 296 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCHHH----HHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChhhHHH----HHHHHHHHHh
Confidence 112334445679999999999721122211 22222222 3567 667889999986532 2344444443
Q ss_pred cCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 193 ~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
. ..+++++||+++ .++++|++.|...+.
T Consensus 297 ~-----g~~vi~iSA~~g----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 297 E-----GLAVLPVSALTG----------AGLPALKEALHALVR 324 (416)
T ss_dssp T-----TSCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred c-----CCeEEEEECCCc----------cCHHHHHHHHHHHHH
Confidence 3 367999999999 999999999887553
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.32 E-value=1.1e-12 Score=130.56 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=94.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccc-ccccc-------------c--------cCCC--hhh------hh-
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSK-FITFD-------------Q--------IDRA--PEE------KA- 91 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~-~~~~~-------------~--------~d~~--~~e------~~- 91 (463)
...+|+++|.+++|||||+++|++... ..+.+. .+... . .++. ..+ +-
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 357899999999999999999986532 111000 00000 0 0110 000 11
Q ss_pred ---cCceEEeeEEEEe-cCCeeEEEEeCCChh-------------hhHHHHHhhccc-CCEEEEEEeCCCCCcHHHH-HH
Q psy3124 92 ---RGITINIAHVEYS-TNTRHYAHTDCPGHA-------------DYIKNMISGASQ-MDGAIVVVAASEGQMPQTR-EH 152 (463)
Q Consensus 92 ---~g~Ti~~~~~~~~-~~~~~i~liDtPGh~-------------~f~~~~~~~~~~-aD~ailVVda~~g~~~qt~-e~ 152 (463)
.|+........+. .....++|+||||.. .+...+...+.. .|++++|+|++.+...+.. +.
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 3333322222222 235789999999963 233334445544 4566667888776655544 24
Q ss_pred HHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCC--CCCCCcEEEccchhhccCCCCCCCCccHHHHHHHh
Q psy3124 153 LLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGY--DGDNTPFVFGSALLALQGDSSELGEPSIHRLLDAL 230 (463)
Q Consensus 153 l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~--~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L 230 (463)
+..+...+.| +++|+||+|+.+... . +.+.+....+ .....+++++||+++ .++++|++++
T Consensus 190 ~~~~~~~~~~-~i~V~NK~Dl~~~~~--~----~~~~~~~~~~~l~~~~~~v~~~SA~~~----------~~i~~l~~~l 252 (353)
T 2x2e_A 190 AKEVDPQGQR-TIGVITKLDLMDEGT--D----ARDVLENKLLPLRRGYIGVVNRSQKDI----------DGKKDITAAL 252 (353)
T ss_dssp HHHHCTTCTT-EEEEEECGGGSCTTC--C----CHHHHTTCSSCCTTCEEECCCCCHHHH----------HTTCCHHHHH
T ss_pred HHHhCcCCCc-eEEEeccccccCcch--h----HHHHHhCCcccccCCceEEEeCCcccc----------cccccHHHHH
Confidence 4555556778 889999999985321 0 1111211111 111257889999998 5655666655
Q ss_pred hh
Q psy3124 231 DK 232 (463)
Q Consensus 231 ~~ 232 (463)
..
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.28 E-value=5.2e-12 Score=126.04 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=60.7
Q ss_pred CCeeEEEEeCCChhhh-------------HHHHHhhcccCCEEEEEEeCCCCC-c-HHHHHHHHHHHHcCCCeEEEEEec
Q psy3124 106 NTRHYAHTDCPGHADY-------------IKNMISGASQMDGAIVVVAASEGQ-M-PQTREHLLLSKQIGIDNVVVYVNK 170 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f-------------~~~~~~~~~~aD~ailVVda~~g~-~-~qt~e~l~~~~~l~ip~iivvvNK 170 (463)
....++|+||||..++ ...+..++..+|++|+|+|+.... . ....+.+..+...+.| +|+|+||
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK 212 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK 212 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence 3567999999998776 455566778999999999875322 2 2223333334445677 8899999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhh
Q psy3124 171 ADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 171 iD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
+|+.++... ..+.++.... ....+++++|+..+
T Consensus 213 ~Dl~~~~~~------~~~~~~~~~~-~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 213 IDLMDKGTD------AVEILEGRSF-KLKYPWVGVVNRSQ 245 (360)
T ss_dssp GGGCCTTCC------SHHHHTTSSS-CCSSCCEEECCCCH
T ss_pred CccCCCccc------HHHHHcCccc-cccCCeEEEEECCh
Confidence 999853210 1112222111 12367888888765
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=5.1e-11 Score=120.45 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=85.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEecC--CeeEEEEeCCChhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN--TRHYAHTDCPGHAD 120 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPGh~~ 120 (463)
-.++|+++|+.|+|||||++.|++... ..+.... ..+ ....+........+... ...++++|+||..+
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~----~~~-----~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP----SHR-----IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC----C----------CCEEEEEECC------CEEEEEEECC----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc----ccC-----CccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 457899999999999999999987532 1111000 000 00111111111111111 23689999999876
Q ss_pred hHH------HHH------------------h-hccc--CCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 121 YIK------NMI------------------S-GASQ--MDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 121 f~~------~~~------------------~-~~~~--aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
+.. .+. + .+.. +|+++++++++ +++.+...+.+..+.. +++ +|+|+||+|
T Consensus 101 ~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~D 178 (418)
T 2qag_C 101 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKAD 178 (418)
T ss_dssp -------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTT
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEccc
Confidence 531 110 1 1122 45577777776 6777777666665543 666 899999999
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 173 LVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 173 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
+.+...+...++++.+.+...+ ++++.+|+.++ .+..+++..|..
T Consensus 179 ll~~~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~----------~~v~~~~~~l~~ 223 (418)
T 2qag_C 179 TLTPEECQQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKD 223 (418)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHT-----CCCCCCC--------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHcC-----CeEEeCCCCCC----------cCHHHHHHHHHh
Confidence 9977667777788888888765 56888899887 666665555544
No 195
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.25 E-value=3.3e-12 Score=137.16 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=93.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCcccc-c-------------cccccCC------C----hhh------h--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKF-I-------------TFDQIDR------A----PEE------K-- 90 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~-~-------------~~~~~d~------~----~~e------~-- 90 (463)
..++|+++|.+++|||||+|+|++... ..|.+.. + ....+.. . ..+ .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 467999999999999999999987522 1111100 0 0000000 0 000 0
Q ss_pred --hcCceEEeeEEEEe-cCCeeEEEEeCCChhh-------------hHHHHHhhc-ccCCEEEEEEeCCCCCcHHHH-HH
Q psy3124 91 --ARGITINIAHVEYS-TNTRHYAHTDCPGHAD-------------YIKNMISGA-SQMDGAIVVVAASEGQMPQTR-EH 152 (463)
Q Consensus 91 --~~g~Ti~~~~~~~~-~~~~~i~liDtPGh~~-------------f~~~~~~~~-~~aD~ailVVda~~g~~~qt~-e~ 152 (463)
..+++-+.....+. -....++|+||||..+ +...+...+ ..+|++++|+||+.+...+.. +.
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 12333222223322 2445799999999533 222333344 468999999999988766665 56
Q ss_pred HHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHH--cCCCCCCCcEEEccchhh
Q psy3124 153 LLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA--YGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 153 l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~--~g~~~~~~pvi~~Sa~~~ 210 (463)
+..+...+.| +|+|+||+|+.+..... ..++.. +.+.....+++++||+++
T Consensus 210 l~~L~~~g~p-vIlVlNKiDlv~~~~~~------~~il~~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 210 AKEVDPQGQR-TIGVITKLDLMDEGTDA------RDVLENKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHHHCTTCSS-EEEEEECTTSSCTTCCS------HHHHTTCSSCCSSCEEECCCCCCEES
T ss_pred HHHHHhcCCC-EEEEEeCcccCCcchhh------HHHHHHHhhhhhccCCceEEeccccc
Confidence 6666777888 88999999998543210 111111 111112257889999998
No 196
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.18 E-value=9.3e-11 Score=115.73 Aligned_cols=173 Identities=18% Similarity=0.116 Sum_probs=93.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhc-CccccccccccCC-----Chhhhh------cCceEEeeE-----------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDR-----APEEKA------RGITINIAH----------- 100 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~-----~~~e~~------~g~Ti~~~~----------- 100 (463)
+...++++|++|||||||++.|.+..... |+........... ....+. .........
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 45689999999999999999998775543 2221110000000 000000 000000000
Q ss_pred -------EEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 101 -------VEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 101 -------~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
..++..+..+.|+||||..+-... ....+|.+++|+|+..+...+ .+.. ....++ .++++||+|+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~-~ivvlNK~Dl 205 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQ---GIKK-GIFELA-DMIAVNKADD 205 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---------CCT-THHHHC-SEEEEECCST
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHH---HHHH-HHhccc-cEEEEEchhc
Confidence 002346788999999997542211 236799999999987543211 0000 001235 3567899997
Q ss_pred cc-HHHHHHHHHHHHHHHHHcCCC--CCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 174 VD-REIMELVELEVRDVLTAYGYD--GDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 174 ~~-~~~~~~i~~~i~~~l~~~g~~--~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
.+ ........+++...+....-. ....|++++||+++ .++++|++.|....
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g----------~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG----------KGLDSLWSRIEDHR 259 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 63 332223334444433322210 01357999999999 99999999887743
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.13 E-value=2.4e-10 Score=111.00 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=79.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh-h-HhcCccccccccccCCChhhhhcCceEEeeEEEEec--CCeeEEEEeCCCh-
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV-A-AKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST--NTRHYAHTDCPGH- 118 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~-~-~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDtPGh- 118 (463)
-.++|+++|+.|+|||||+++|.+. . ...| ... +.. ....++........+.. ....++++||||.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~------~g~--~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISG------AAE--KIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-ccc------CCc--ccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 3578999999999999999998764 2 2222 100 000 00001111111111221 2357899999998
Q ss_pred ------hhh---HH-------HHHhhcc----------cCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEEEecc
Q psy3124 119 ------ADY---IK-------NMISGAS----------QMDGAIVVVAASE-GQMPQTREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 119 ------~~f---~~-------~~~~~~~----------~aD~ailVVda~~-g~~~qt~e~l~~~~~l~ip~iivvvNKi 171 (463)
+.| .. .....++ .++++++++++.. ++.+...+.+..+. .+++ +++|+||.
T Consensus 88 ~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~ 165 (301)
T 2qnr_A 88 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKA 165 (301)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCG
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeC
Confidence 332 11 1122221 2355677777644 57666655544433 2456 88999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccchhh
Q psy3124 172 DLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLA 210 (463)
Q Consensus 172 D~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~ 210 (463)
|+.+.......++++.+.++..+ ++++++||+++
T Consensus 166 Dl~~~~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 166 DTLTLKERERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 99865555555667778877765 57899999886
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.09 E-value=6.9e-11 Score=117.59 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=78.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh--
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD-- 120 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~-- 120 (463)
....+|+++|.+|+|||||+|+|++.....+ ...+.|.+.....+.+.+.++.|+||||..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~----------------~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a 133 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAA----------------EYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGA 133 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGG----------------GTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCccc----------------CCCCceeeeeeEEEEeCCcEEEEEeCCCccCCc
Confidence 3457999999999999999999987522211 1225666666666777889999999999643
Q ss_pred -----hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH-HHHHHc-----CCCeEEEEEeccCcc
Q psy3124 121 -----YIKNMISGASQMDGAIVVVAASEGQMPQTREHL-LLSKQI-----GIDNVVVYVNKADLV 174 (463)
Q Consensus 121 -----f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l-~~~~~l-----~ip~iivvvNKiD~~ 174 (463)
.....+..++.||++++|||++++... .+.+ ..+... ..| .++++||+|..
T Consensus 134 ~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 134 KDGRGRGKQVIAVARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp ----CHHHHHHHHHHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCC-CCEEEEECSSS
T ss_pred hhhhHHHHHHHHHHHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCC-hhhhhhHhhhh
Confidence 234566777889999999999874321 1111 112222 234 56899999973
No 199
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=3.3e-10 Score=112.10 Aligned_cols=82 Identities=21% Similarity=0.177 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC-----------------e
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT-----------------R 108 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----------------~ 108 (463)
.+|+++|.+|+|||||+++|++.....+..+ +.|++.....+...+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p----------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYP----------------FCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------C----------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCC----------------CceECceEEEEecCCcccceeeeeecccceeee
Confidence 6799999999999999999987522111111 112221111122222 4
Q ss_pred eEEEEeCCChhhhHHH-------HHhhcccCCEEEEEEeCCC
Q psy3124 109 HYAHTDCPGHADYIKN-------MISGASQMDGAIVVVAASE 143 (463)
Q Consensus 109 ~i~liDtPGh~~f~~~-------~~~~~~~aD~ailVVda~~ 143 (463)
.+.++||||..++... ....++.+|++++|+|+.+
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 6899999998876432 3345688999999999986
No 200
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.05 E-value=1.1e-09 Score=88.41 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=68.7
Q ss_pred CCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccccCc
Q psy3124 242 TSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQI 321 (463)
Q Consensus 242 ~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i 321 (463)
..|..+.|..++..-. |+++.|+|++|+|++|+.| |.+. ...+|+||+++++++++|.+||+|+++++|+.. ++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 4577777777444434 8899999999999999998 5431 457899999999999999999999999999877 99
Q ss_pred ccceEEec
Q psy3124 322 ERGMLLAK 329 (463)
Q Consensus 322 ~~G~vl~~ 329 (463)
++||+|..
T Consensus 106 ~~GdVLyv 113 (116)
T 1xe1_A 106 KKGDVLEI 113 (116)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 99999853
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.04 E-value=4.6e-10 Score=115.89 Aligned_cols=130 Identities=20% Similarity=0.156 Sum_probs=75.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC-------hhhhhcCceEEeeEE-------------E
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA-------PEEKARGITINIAHV-------------E 102 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-------~~e~~~g~Ti~~~~~-------------~ 102 (463)
.+..+|+++|++|+||||+++.|.......|...........+. ......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999877665554322111000000 111223444322100 0
Q ss_pred EecCCeeEEEEeCCChhh----hHHHHHhh--cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 103 YSTNTRHYAHTDCPGHAD----YIKNMISG--ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 103 ~~~~~~~i~liDtPGh~~----f~~~~~~~--~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
+.+.++.+.||||||... +...+... +..+|.+++||||..|.. ..+.+...... +|-.++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 123677899999999753 33333222 237899999999998753 22222222221 452268899999873
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=1.6e-09 Score=109.08 Aligned_cols=145 Identities=11% Similarity=0.178 Sum_probs=84.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCC--eeEEEEeCCChhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--RHYAHTDCPGHADY 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPGh~~f 121 (463)
..++++++|+.|+|||||++.|++.... |.. . .....+.+.....+.+.... ..++++|+||....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~-g~~-------~----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFE-GEP-------A----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcccc-CCc-------C----CCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 3567999999999999999999876211 100 0 00011223222222222222 26889999985421
Q ss_pred -------------HHH-----HHh--hcc-------cC--C-EEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Q psy3124 122 -------------IKN-----MIS--GAS-------QM--D-GAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 122 -------------~~~-----~~~--~~~-------~a--D-~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKi 171 (463)
+.. +.. ++. .+ | ++++|+|+.+++.....+.+..+. .++| +|+|+||+
T Consensus 109 ~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~Kt 186 (427)
T 2qag_B 109 INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKA 186 (427)
T ss_dssp CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcch
Confidence 111 111 111 12 2 466788998888877766666554 4555 99999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEccc
Q psy3124 172 DLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA 207 (463)
Q Consensus 172 D~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~Sa 207 (463)
|..++.....+.+.+++.|+..| ++++++|.
T Consensus 187 D~Lt~~E~~~l~~~I~~~L~~~g-----i~I~~is~ 217 (427)
T 2qag_B 187 DAISKSELTKFKIKITSELVSNG-----VQIYQFPT 217 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHBTTB-----CCCCCCC-
T ss_pred hccchHHHHHHHHHHHHHHHHcC-----CcEEecCC
Confidence 99977667777777777665544 66777774
No 203
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.98 E-value=6.3e-09 Score=102.00 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=84.8
Q ss_pred ceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH----
Q psy3124 94 ITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASE-----------GQMPQTREHLLLSKQ---- 158 (463)
Q Consensus 94 ~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~-----------g~~~qt~e~l~~~~~---- 158 (463)
.|+-+....+...+..+.++||+|++.|...+......++++|+|+|.++ .-+....+.+.....
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 34444455667778899999999999999999999999999999999872 112333333333322
Q ss_pred cCCCeEEEEEeccCcccHHH-----------------HHHHHHHHHHHH------HHcCCCC------------CCCcEE
Q psy3124 159 IGIDNVVVYVNKADLVDREI-----------------MELVELEVRDVL------TAYGYDG------------DNTPFV 203 (463)
Q Consensus 159 l~ip~iivvvNKiD~~~~~~-----------------~~~i~~~i~~~l------~~~g~~~------------~~~pvi 203 (463)
.++| ++++.||+|+..+.. +++..+.+.+.+ ..+.... ..+.+.
T Consensus 227 ~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 227 KGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp TTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred CCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 3566 899999999864321 233333344433 2222111 236778
Q ss_pred EccchhhccCCCCCCCCccHHHHHHHhhh
Q psy3124 204 FGSALLALQGDSSELGEPSIHRLLDALDK 232 (463)
Q Consensus 204 ~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~ 232 (463)
.+||... .+++.+++.+..
T Consensus 306 ~TsA~dt----------~nv~~vF~~v~~ 324 (340)
T 4fid_A 306 PTNATDG----------SNIKRVFMLAVD 324 (340)
T ss_dssp EECTTCH----------HHHHHHHHHHHH
T ss_pred EEEeeCc----------HHHHHHHHHHHH
Confidence 8999998 888887777655
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.97 E-value=1.7e-09 Score=99.97 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=90.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccc---cCCChhhhhcCce-EEee---EEEE------------e
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQ---IDRAPEEKARGIT-INIA---HVEY------------S 104 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~---~d~~~~e~~~g~T-i~~~---~~~~------------~ 104 (463)
...+|+++|+.|+|||||+++|+.......+........ .|....+. .|.. +.+. ...+ .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEK-HGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHT-TTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHh-cCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 468999999999999999999986643321111110000 00000000 0111 1110 0000 0
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHH
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVEL 184 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~ 184 (463)
..+..+.++|++|...- . ...-...+..+.|+|+..+..... .....++.| .++|+||+|+.+... ...+
T Consensus 116 ~~~~d~~~id~~g~i~~-~--~s~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~-~iiv~NK~Dl~~~~~--~~~~ 185 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC-P--ADFDLGTHKRIVVISTTEGDDTIE----KHPGIMKTA-DLIVINKIDLADAVG--ADIK 185 (226)
T ss_dssp GGGCSEEEEECCSCSSG-G--GGCCCSCSEEEEEEEGGGCTTTTT----TCHHHHTTC-SEEEEECGGGHHHHT--CCHH
T ss_pred cCCCCEEEEeCCCCccC-c--chhhhccCcEEEEEecCcchhhHh----hhhhHhhcC-CEEEEeccccCchhH--HHHH
Confidence 11236889999994111 0 011134577788898754332111 011224667 678999999974321 0112
Q ss_pred HHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 185 EVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 185 ~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
++.+.++.++ ...|++++||+++ .+++++++.|...
T Consensus 186 ~~~~~~~~~~---~~~~~~~~Sa~~g----------~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 186 KMENDAKRIN---PDAEVVLLSLKTM----------EGFDKVLEFIEKS 221 (226)
T ss_dssp HHHHHHHHHC---TTSEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCCeEEEEEecCC----------CCHHHHHHHHHHH
Confidence 3444444433 2478999999999 9999999988653
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.96 E-value=8.3e-10 Score=109.82 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEe-------------------cC
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS-------------------TN 106 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-------------------~~ 106 (463)
++|+++|.+|+|||||+++|++........++. .....+.. ..+. ..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~----------Ti~pn~g~----~~v~~~~l~~~~~~~~~~~~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFA----------TIDKNVGV----VPLEDERLYALQRTFAKGERVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG----------GGSTTEEE----EECCCHHHHHHHHHHCBTTBCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCc----------eeccceee----EecChHHHHHHHHHhcccccccccC
Confidence 468999999999999999998763211111110 00001111 1110 12
Q ss_pred CeeEEEEeCCChhhh-------HHHHHhhcccCCEEEEEEeCCC
Q psy3124 107 TRHYAHTDCPGHADY-------IKNMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 107 ~~~i~liDtPGh~~f-------~~~~~~~~~~aD~ailVVda~~ 143 (463)
...+.++||||..++ .......++.+|++++|+|+.+
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 346899999998664 2345566789999999999986
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=4.8e-09 Score=100.08 Aligned_cols=143 Identities=19% Similarity=0.235 Sum_probs=87.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHh-cCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAK-IGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD--- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~--- 120 (463)
.++++++|+.|||||||++.|++.... .|....... +.......+++..-... ..-...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~---~i~~~~~~~~i~~v~q~---~~~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREE---KIPKTVEIKAIGHVIEE---GGVKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSB
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCc---ccCcceeeeeeEEEeec---CCCcCCceEEechhhhhhcc
Confidence 468999999999999999999876532 222111000 00000011111110000 01123678999998432
Q ss_pred ----------hH-----HHHHh----------hcccCCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 121 ----------YI-----KNMIS----------GASQMDGAIVVVAAS-EGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 121 ----------f~-----~~~~~----------~~~~aD~ailVVda~-~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
|+ ..... .+..+++.++++|.. +|..+...+.+..+... ++ +|+|+||+|..
T Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l 153 (270)
T 3sop_A 76 NENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTM 153 (270)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGS
T ss_pred cHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccC
Confidence 11 11111 123368899999954 88888888888877766 55 99999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCC
Q psy3124 175 DREIMELVELEVRDVLTAYGY 195 (463)
Q Consensus 175 ~~~~~~~i~~~i~~~l~~~g~ 195 (463)
..+.....++.+++.++..+.
T Consensus 154 t~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 154 TLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCc
Confidence 877778888888888888764
No 207
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.90 E-value=1.1e-08 Score=99.83 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=86.4
Q ss_pred ceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCC-------CCC----cHHHHHHHHHHHH----
Q psy3124 94 ITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAAS-------EGQ----MPQTREHLLLSKQ---- 158 (463)
Q Consensus 94 ~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~-------~g~----~~qt~e~l~~~~~---- 158 (463)
.|+.+....+...+..+.++||+|++.|...+....+.++++|+|+|.+ +.. +....+.+.....
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3443444566677889999999999999999999999999999999765 211 2233333333322
Q ss_pred cCCCeEEEEEeccCcccHH------------------HHHHHHHHHHHHHHHcCCC-CCCCcEEEccchhhccCCCCCCC
Q psy3124 159 IGIDNVVVYVNKADLVDRE------------------IMELVELEVRDVLTAYGYD-GDNTPFVFGSALLALQGDSSELG 219 (463)
Q Consensus 159 l~ip~iivvvNKiD~~~~~------------------~~~~i~~~i~~~l~~~g~~-~~~~pvi~~Sa~~~~~~~~~~~~ 219 (463)
.++| ++++.||+|+..+. ..++..+-+...+...... ...+.+..+||+++
T Consensus 233 ~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~--------- 302 (327)
T 3ohm_A 233 QNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT--------- 302 (327)
T ss_dssp TTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH---------
T ss_pred CCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC---------
Confidence 3566 89999999986432 2333344444444433322 23366788999999
Q ss_pred CccHHHHHHHhhhc
Q psy3124 220 EPSIHRLLDALDKH 233 (463)
Q Consensus 220 ~~~i~~Ll~~L~~~ 233 (463)
.+++.+++.+...
T Consensus 303 -~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 303 -ENIRFVFAAVKDT 315 (327)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 8998888887653
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.73 E-value=1.8e-08 Score=100.58 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=48.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecC-----------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN----------------- 106 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------------- 106 (463)
...+|+++|.+|+|||||+++|++....... ..+.|++.....+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~----------------~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~ 84 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAEN----------------FPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccC----------------CCccccCceeEEEEECCccceeeccccCccccc
Confidence 3578999999999999999999865221111 1122332222222211
Q ss_pred CeeEEEEeCCChhhhHH-------HHHhhcccCCEEEEEEeCCC
Q psy3124 107 TRHYAHTDCPGHADYIK-------NMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~-------~~~~~~~~aD~ailVVda~~ 143 (463)
...+.++||||..++.. .....++.+|++++|+|+.+
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23589999999887654 44567789999999999975
No 209
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.72 E-value=2.8e-08 Score=98.31 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=87.6
Q ss_pred ceEEeeEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----
Q psy3124 94 ITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-----------MPQTREHLLLSKQ---- 158 (463)
Q Consensus 94 ~Ti~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-----------~~qt~e~l~~~~~---- 158 (463)
.|+.+....+...+..+.++||+|+++|.+.+......+|++|+|+|.++-. +....+.+.....
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3433344556667889999999999999999999999999999999998621 2333344433332
Q ss_pred cCCCeEEEEEeccCcccHH-----------------HHHHHHHHHHHHHHHcCCC--CCCCcEEEccchhhccCCCCCCC
Q psy3124 159 IGIDNVVVYVNKADLVDRE-----------------IMELVELEVRDVLTAYGYD--GDNTPFVFGSALLALQGDSSELG 219 (463)
Q Consensus 159 l~ip~iivvvNKiD~~~~~-----------------~~~~i~~~i~~~l~~~g~~--~~~~pvi~~Sa~~~~~~~~~~~~ 219 (463)
.++| +|++.||+|+..+. ..++..+.+...+..+... ...++++.+||+++
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--------- 328 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--------- 328 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH---------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc---------
Confidence 3566 99999999985321 1233333333333333211 23578899999999
Q ss_pred CccHHHHHHHhhhc
Q psy3124 220 EPSIHRLLDALDKH 233 (463)
Q Consensus 220 ~~~i~~Ll~~L~~~ 233 (463)
.++.++++++...
T Consensus 329 -~nV~~vF~~v~~~ 341 (353)
T 1cip_A 329 -KNVQFVFDAVTDV 341 (353)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHH
Confidence 8999999887653
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.72 E-value=3.2e-07 Score=92.35 Aligned_cols=163 Identities=16% Similarity=0.136 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHh-cCccccccccccCCChhhhhcCceEEeeEEEEecC-CeeEEEEeCCChhh--
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAK-IGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN-TRHYAHTDCPGHAD-- 120 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPGh~~-- 120 (463)
...++++|+.|||||||++.|++.... .|.... +.....+ .+. .+... ...++++|+||...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~------~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~ 134 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT------GVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTN 134 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC------CC----C-CCE-------EEECSSCTTEEEEECCCGGGSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE------CCeecce-eEE-------eccccccCCeeehHhhcccchH
Confidence 348999999999999999999885432 222211 1100000 111 12212 23689999999532
Q ss_pred -hHHHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc--cH-------HHHHHHHHHHHH
Q psy3124 121 -YIKNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV--DR-------EIMELVELEVRD 188 (463)
Q Consensus 121 -f~~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~--~~-------~~~~~i~~~i~~ 188 (463)
-....+. ++...|..++ +|... .+.|-...+..+...+.| +++|+||.|+. |+ ...+.+.+.+++
T Consensus 135 ~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 1222222 3444565554 78764 355666666666667877 88999999976 22 112333344444
Q ss_pred HH----HHcCCCCCCCcEEEccc--hhhccCCCCCCCCccHHHHHHHhhhcCCC
Q psy3124 189 VL----TAYGYDGDNTPFVFGSA--LLALQGDSSELGEPSIHRLLDALDKHIPN 236 (463)
Q Consensus 189 ~l----~~~g~~~~~~pvi~~Sa--~~~~~~~~~~~~~~~i~~Ll~~L~~~l~~ 236 (463)
+. .+.|.+ ...++++|+ ..+ .++++|.+.+...+|.
T Consensus 212 l~~~~l~~~g~~--~~~iiliSsh~l~~----------~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 212 NCVNTFRENGIA--EPPIFLLSNKNVCH----------YDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHTTCS--SCCEEECCTTCTTS----------TTHHHHHHHHHHHSCG
T ss_pred HHHHHHHhcCCC--CCcEEEEecCcCCc----------cCHHHHHHHHHHhCcc
Confidence 33 333322 235889999 444 5799999999887764
No 211
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.61 E-value=7.1e-08 Score=95.73 Aligned_cols=123 Identities=12% Similarity=0.207 Sum_probs=76.2
Q ss_pred eEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cCCCe
Q psy3124 99 AHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-----------MPQTREHLLLSKQ----IGIDN 163 (463)
Q Consensus 99 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-----------~~qt~e~l~~~~~----l~ip~ 163 (463)
....+...+..+.++||+|++.|...+......++++|+|+|.++-. +......+..... .++|
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p- 270 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS- 270 (362)
T ss_dssp EEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-
T ss_pred EEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-
Confidence 33456667889999999999999999999999999999999998721 2333333333322 3566
Q ss_pred EEEEEeccCcccHH------------------HHHHHHHHHHHHHHHcCCC--CCCCcEEEccchhhccCCCCCCCCccH
Q psy3124 164 VVVYVNKADLVDRE------------------IMELVELEVRDVLTAYGYD--GDNTPFVFGSALLALQGDSSELGEPSI 223 (463)
Q Consensus 164 iivvvNKiD~~~~~------------------~~~~i~~~i~~~l~~~g~~--~~~~pvi~~Sa~~~~~~~~~~~~~~~i 223 (463)
+|+++||+|+..+. ..++..+.+...+..+.-. ...++++++||+++ .++
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~----------~nV 340 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT----------ENI 340 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH----------HHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc----------hhH
Confidence 99999999986321 1233332232222222111 23478899999999 899
Q ss_pred HHHHHHhhh
Q psy3124 224 HRLLDALDK 232 (463)
Q Consensus 224 ~~Ll~~L~~ 232 (463)
.++++++..
T Consensus 341 ~~vF~~v~~ 349 (362)
T 1zcb_A 341 RLVFRDVKD 349 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.59 E-value=1.9e-09 Score=107.60 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--- 121 (463)
..+|+++|.+|+|||||+|+|++....... ........|.|.+.....+. ..+.++||||..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~----------~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGN----------VITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQM 228 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTC----------CCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcc----------ceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHH
Confidence 357999999999999999999876322111 01111223566655444332 24899999995321
Q ss_pred ---H-HHHHhhc---ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccH
Q psy3124 122 ---I-KNMISGA---SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR 176 (463)
Q Consensus 122 ---~-~~~~~~~---~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~ 176 (463)
+ ...+..+ ...|.+++++++....+....+.+..+...++| +++++||+|....
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 1 1112222 568999999999543211111112223344666 8999999999843
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.58 E-value=1.6e-07 Score=95.46 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=72.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccc------cccCCChh-hhhcCceEEeeE--------E----EEe
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITF------DQIDRAPE-EKARGITINIAH--------V----EYS 104 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~------~~~d~~~~-e~~~g~Ti~~~~--------~----~~~ 104 (463)
+..+|+++|++|+||||+++.|.......|....... ...+.... ....|+.+.... . --.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999877655443211100 00111111 011122221110 0 001
Q ss_pred cCCeeEEEEeCCChhh----hHHHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CeEEEEEeccCccc
Q psy3124 105 TNTRHYAHTDCPGHAD----YIKNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI-DNVVVYVNKADLVD 175 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~----f~~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~i-p~iivvvNKiD~~~ 175 (463)
..++.+.||||||... +...+.. .+..+|.+++|+||..|. .....+.... .++ +...+|+||+|...
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc
Confidence 2567899999999654 3333322 233689999999998763 2222222221 235 54678999999864
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.57 E-value=3.2e-07 Score=92.81 Aligned_cols=128 Identities=20% Similarity=0.137 Sum_probs=74.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC---------hhhhhcCceEEeeEE-------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA---------PEEKARGITINIAHV------------- 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---------~~e~~~g~Ti~~~~~------------- 101 (463)
+...|+++|.+|+||||++..|...+...|....... .|.. ......|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~--~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC--SDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE--CCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe--CCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 4678999999999999999999877766654322111 1111 111222443322100
Q ss_pred EEecCCeeEEEEeCCChhh----hHHHH--HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 102 EYSTNTRHYAHTDCPGHAD----YIKNM--ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 102 ~~~~~~~~i~liDtPGh~~----f~~~~--~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+...+..+.||||||... ...++ +..+..+|.++||+||..|.. .......... .++...||+||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 0112457899999999432 22222 123345899999999987532 2222222221 2333468899999974
Q ss_pred H
Q psy3124 176 R 176 (463)
Q Consensus 176 ~ 176 (463)
.
T Consensus 254 ~ 254 (443)
T 3dm5_A 254 K 254 (443)
T ss_dssp S
T ss_pred c
Confidence 3
No 215
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=1.2e-07 Score=91.97 Aligned_cols=103 Identities=21% Similarity=0.196 Sum_probs=75.8
Q ss_pred eEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCC-c-HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHH
Q psy3124 109 HYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ-M-PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEV 186 (463)
Q Consensus 109 ~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~-~-~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i 186 (463)
.+.++|+ +++|.......++.+|++|+|+|+++.. . ....+.+..+...++| +++|+||+|+.+.... +++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~v----~~~ 136 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDDL----RKV 136 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHH----HHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchhH----HHH
Confidence 7899999 8888766667889999999999999764 2 3334445555566787 7899999999865432 234
Q ss_pred HHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 187 ~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
.++++.++- . .+++++||+++ .+++++++.+.
T Consensus 137 ~~~~~~~~~--~-~~~~~~SAktg----------~gv~~lf~~l~ 168 (301)
T 1u0l_A 137 RELEEIYSG--L-YPIVKTSAKTG----------MGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHTT--T-SCEEECCTTTC----------TTHHHHHHHHS
T ss_pred HHHHHHHhh--h-CcEEEEECCCC----------cCHHHHHHHhc
Confidence 444444431 1 68999999999 89999988764
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.54 E-value=5.5e-09 Score=104.24 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=68.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh---
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY--- 121 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f--- 121 (463)
..+|+++|.+|+|||||+|+|++....... +........|.|.+.....+. ..+.++||||..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~---------~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETE---------NVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQM 227 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCS---------SCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSG
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccc---------cceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHH
Confidence 357999999999999999999875311100 001111223555554443332 23899999995331
Q ss_pred ----HHHHHhh---cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHH
Q psy3124 122 ----IKNMISG---ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIME 180 (463)
Q Consensus 122 ----~~~~~~~---~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~ 180 (463)
....+.. ....+..++++++...........+..+...++| +++++||+|.......+
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~~~~~ 292 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHRTKLE 292 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEEEEHH
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCccccccccHH
Confidence 1222222 3567899999998543211111112223334666 89999999998544333
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.43 E-value=1.1e-06 Score=84.73 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC-h--h------hhhcCceEEeeEE-------------E
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA-P--E------EKARGITINIAHV-------------E 102 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-~--~------e~~~g~Ti~~~~~-------------~ 102 (463)
...|+++|+.|+||||++..|.......|..-... ..|.. + . ....|+.+-.... .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~--~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV--GADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE--ECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--ecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 56789999999999999999987766554321111 11111 0 0 1112333321100 0
Q ss_pred EecCCeeEEEEeCCChhh--hHHHHH------hhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 103 YSTNTRHYAHTDCPGHAD--YIKNMI------SGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 103 ~~~~~~~i~liDtPGh~~--f~~~~~------~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
+...++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+..+.+..... .++...+|+||+|..
T Consensus 176 ~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 112567899999999766 322222 234578999999999865 233333333222 355456789999986
Q ss_pred c
Q psy3124 175 D 175 (463)
Q Consensus 175 ~ 175 (463)
.
T Consensus 253 ~ 253 (297)
T 1j8m_F 253 A 253 (297)
T ss_dssp T
T ss_pred c
Confidence 3
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=1.2e-06 Score=88.62 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh---------hhhhcCceEEeeEE-------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP---------EEKARGITINIAHV------------- 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~~------------- 101 (463)
+...|+++|+.|+||||++..|...+...|..-.... .|... .....|+.......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~--~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA--ADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE--ECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--cCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 4678999999999999999999877766553221110 11110 00112332221100
Q ss_pred EEecCCeeEEEEeCCChhh------hHHHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccC
Q psy3124 102 EYSTNTRHYAHTDCPGHAD------YIKNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKAD 172 (463)
Q Consensus 102 ~~~~~~~~i~liDtPGh~~------f~~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD 172 (463)
.+...+..+.|+||||... +..++.. ....+|.++||+||..|.. ..+.+... ..+++ ..|++||+|
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~--~gVIlTKlD 249 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPI--GSVIITKMD 249 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSS--EEEEEECGG
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCC--cEEEEeccc
Confidence 1112467899999999644 3333322 2235799999999987632 12222222 23343 457899999
Q ss_pred ccc
Q psy3124 173 LVD 175 (463)
Q Consensus 173 ~~~ 175 (463)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 873
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.38 E-value=9.9e-07 Score=88.34 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=56.8
Q ss_pred eEEEEecCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCC----------CC-cHHHHHHHHHHHH----cCCCe
Q psy3124 99 AHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASE----------GQ-MPQTREHLLLSKQ----IGIDN 163 (463)
Q Consensus 99 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~----------g~-~~qt~e~l~~~~~----l~ip~ 163 (463)
....+...+..+.++||+|+++|...+......++++|+|+|.++ .. +......+..... .++|
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p- 286 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS- 286 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC-
T ss_pred EEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe-
Confidence 334556677889999999999999999999999999999999986 11 2333333433332 2466
Q ss_pred EEEEEeccCccc
Q psy3124 164 VVVYVNKADLVD 175 (463)
Q Consensus 164 iivvvNKiD~~~ 175 (463)
+++|.||+|+..
T Consensus 287 iiLvgNK~DL~~ 298 (402)
T 1azs_C 287 VILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEEChhhhh
Confidence 899999999863
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.35 E-value=8.8e-07 Score=84.88 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=65.6
Q ss_pred EEeCCChh-hhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH-cCCCeEEEEEeccCcccHHHHHHHHHHHHHH
Q psy3124 112 HTDCPGHA-DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ-IGIDNVVVYVNKADLVDREIMELVELEVRDV 189 (463)
Q Consensus 112 liDtPGh~-~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~-l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~ 189 (463)
+-+.|||. +..+.+...+..+|+++.|+||+.+......+ +... .+.| .++|+||+|+++.... +...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~---l~~~l~~kp-~ilVlNK~DL~~~~~~----~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM---IEDILKNKP-RIMLLNKADKADAAVT----QQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH---HHHHCSSSC-EEEEEECGGGSCHHHH----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH---HHHHHCCCC-EEEEEECcccCCHHHH----HHHHHH
Confidence 45689997 56788888999999999999999876533211 1122 3455 7899999999975432 223344
Q ss_pred HHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcC
Q psy3124 190 LTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHI 234 (463)
Q Consensus 190 l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l 234 (463)
++..+ +|++++||.++ .++.+|++.+...+
T Consensus 75 ~~~~g-----~~~i~iSA~~~----------~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FENQG-----IRSLSINSVNG----------QGLNQIVPASKEIL 104 (282)
T ss_dssp HHTTT-----CCEEECCTTTC----------TTGGGHHHHHHHHH
T ss_pred HHhcC-----CcEEEEECCCc----------ccHHHHHHHHHHHH
Confidence 44333 57999999988 78877777766543
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.29 E-value=2.5e-06 Score=86.56 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=73.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhc-CccccccccccCCC---h------hhhhcCceEEeeE------------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRA---P------EEKARGITINIAH------------ 100 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~---~------~e~~~g~Ti~~~~------------ 100 (463)
++...|+++|+.|+||||++..|...+... |..-... ..|.. . .....|+.+-...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv--d~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV--SADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE--ECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE--ecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 456789999999999999999998777666 5422111 01110 0 0122333332110
Q ss_pred -EEEecCCeeEEEEeCCChhhhHHHHHh------hcccCCEEEEEEeCCCCCcHHHHHHHHH-HHHcCCCeEEEEEeccC
Q psy3124 101 -VEYSTNTRHYAHTDCPGHADYIKNMIS------GASQMDGAIVVVAASEGQMPQTREHLLL-SKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 101 -~~~~~~~~~i~liDtPGh~~f~~~~~~------~~~~aD~ailVVda~~g~~~qt~e~l~~-~~~l~ip~iivvvNKiD 172 (463)
..+...++.+.||||||...+...+.. .+..+|.+++|+|+..|.. ....+.. ...+++. -||+||+|
T Consensus 176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~~l~i~--gvVlnK~D 251 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNEALPLT--GVVLTKVD 251 (433)
T ss_dssp HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHHHSCCC--CEEEECTT
T ss_pred HHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhccCCCe--EEEEecCC
Confidence 011225678999999996554222222 2446899999999987632 2222221 2234444 36899999
Q ss_pred cc
Q psy3124 173 LV 174 (463)
Q Consensus 173 ~~ 174 (463)
..
T Consensus 252 ~~ 253 (433)
T 2xxa_A 252 GD 253 (433)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.25 E-value=4.2e-06 Score=81.01 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=63.6
Q ss_pred hhcccCCEEEEEEeCCCCC-cH-HHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEE
Q psy3124 127 SGASQMDGAIVVVAASEGQ-MP-QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVF 204 (463)
Q Consensus 127 ~~~~~aD~ailVVda~~g~-~~-qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~ 204 (463)
..++.+|.+++|+|++++. .. ...+.+..+...++| +++|+||+|+.++...+. .+++.+..+..+ +++++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~g-----~~~~~ 147 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEEKKE-LERWISIYRDAG-----YDVLK 147 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHHHH-HHHHHHHHHHTT-----CEEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCccccHH-HHHHHHHHHHCC-----CeEEE
Confidence 4688999999999999764 33 334556666778888 779999999986542221 234445555554 57999
Q ss_pred ccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 205 GSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 205 ~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
+||+++ .|+++|++.+.
T Consensus 148 ~SA~~g----------~gi~~L~~~l~ 164 (302)
T 2yv5_A 148 VSAKTG----------EGIDELVDYLE 164 (302)
T ss_dssp CCTTTC----------TTHHHHHHHTT
T ss_pred EECCCC----------CCHHHHHhhcc
Confidence 999999 88888887764
No 223
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.25 E-value=1.6e-06 Score=85.58 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=73.5
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCC----------C-CCcHHHHHHHHHHHH----cCCCeEEEEEecc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAAS----------E-GQMPQTREHLLLSKQ----IGIDNVVVYVNKA 171 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~----------~-g~~~qt~e~l~~~~~----l~ip~iivvvNKi 171 (463)
...+.++||+|+++|...+......+|++|+|+|.+ . .-+......+..... .++| +++|.||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 467899999999999999999999999999999986 1 112333333333322 3566 99999999
Q ss_pred CcccHHH-----------------------HHHHHHHHHHHHHHc---CCC----CCCCcEEEccchhhccCCCCCCCCc
Q psy3124 172 DLVDREI-----------------------MELVELEVRDVLTAY---GYD----GDNTPFVFGSALLALQGDSSELGEP 221 (463)
Q Consensus 172 D~~~~~~-----------------------~~~i~~~i~~~l~~~---g~~----~~~~pvi~~Sa~~~~~~~~~~~~~~ 221 (463)
|+..+.. .++..+-+.+.+..+ +-. ...++++.+||+++ .
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~----------~ 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ----------K 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH----------H
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc----------h
Confidence 9853211 122222212211111 110 12356789999999 8
Q ss_pred cHHHHHHHhhh
Q psy3124 222 SIHRLLDALDK 232 (463)
Q Consensus 222 ~i~~Ll~~L~~ 232 (463)
+++++++.+..
T Consensus 331 nV~~vF~~v~~ 341 (354)
T 2xtz_A 331 LVKKTFKLVDE 341 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99998888765
No 224
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.24 E-value=1.3e-06 Score=87.33 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=54.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH-hcCccccccccccCCChhhhhcCceEEeeEEEEecCC---------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA-KIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT--------------- 107 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--------------- 107 (463)
...+++++|++|+|||||+++|++... ..+..+ +.|++.....+...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p----------------~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~ 82 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP----------------YATIDPEEAKVAVPDERFDWLCEAYKPKSR 82 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS----------------SCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC----------------ceeecceeeeeeeCCcchhhhhhhcccccc
Confidence 457899999999999999999987422 111111 122222111121221
Q ss_pred --eeEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCCC
Q psy3124 108 --RHYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAASE 143 (463)
Q Consensus 108 --~~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~ 143 (463)
..+.++|+||... +.......++.+|.+++|+|+.+
T Consensus 83 v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999543 23345566788999999999875
No 225
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=98.21 E-value=3.3e-06 Score=66.20 Aligned_cols=80 Identities=18% Similarity=0.379 Sum_probs=71.0
Q ss_pred eeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce-eeEEEEEEeeccccceEEccCCeEEEEeccccccCcccce
Q psy3124 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGM 325 (463)
Q Consensus 247 ~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 325 (463)
..|.++|.++..|++...+|.+|.++.+..+.++..+.- ...++.||..+..+|.++.+|.-||+.+.+. +|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 467788999999999999999999999999999976643 3678999999999999999999999998754 6999999
Q ss_pred EEe
Q psy3124 326 LLA 328 (463)
Q Consensus 326 vl~ 328 (463)
+|-
T Consensus 87 ~Ie 89 (99)
T 1d1n_A 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=2.1e-06 Score=81.29 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCChhhh-HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHc
Q psy3124 115 CPGHADY-IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY 193 (463)
Q Consensus 115 tPGh~~f-~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~ 193 (463)
-|||... .+.+...+..+|.++.|+||+.+......+ +.++ +.| .++|+||+|+++....+ ...++++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~-~iivlNK~DL~~~~~~~----~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKE-TIILLNKVDIADEKTTK----KWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSE-EEEEEECGGGSCHHHHH----HHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCC-cEEEEECccCCCHHHHH----HHHHHHHHc
Confidence 3888764 457778889999999999999876533211 1111 666 77999999999764332 333445444
Q ss_pred CCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 194 GYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 194 g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
| .|+ ++||.++ .++++|++.|...
T Consensus 75 g-----~~v-~iSa~~~----------~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 G-----KRV-ITTHKGE----------PRKVLLKKLSFDR 98 (262)
T ss_dssp T-----CCE-EECCTTS----------CHHHHHHHHCCCT
T ss_pred C-----CeE-EEECCCC----------cCHHHHHHHHHHh
Confidence 4 467 9999998 8999999988663
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.04 E-value=1.4e-05 Score=81.55 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=70.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC-ccccccccccCCChh---------hhhcCceEEeeEEE-----------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG-KSKFITFDQIDRAPE---------EKARGITINIAHVE----------- 102 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g-~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~~----------- 102 (463)
+.-.|+++|..|+|||||++.|.+.....+ +.... ..|.... ...+++.+-.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~---g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA---AGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE---CCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe---cCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 356789999999999999999988765443 22211 1122110 02234433221100
Q ss_pred --EecCCeeEEEEeCCChhh----hHHH---HHhhc-----ccCCEEEEEEeCCCCCcHHHHHHHH-HHHHcCCCeEEEE
Q psy3124 103 --YSTNTRHYAHTDCPGHAD----YIKN---MISGA-----SQMDGAIVVVAASEGQMPQTREHLL-LSKQIGIDNVVVY 167 (463)
Q Consensus 103 --~~~~~~~i~liDtPGh~~----f~~~---~~~~~-----~~aD~ailVVda~~g~~~qt~e~l~-~~~~l~ip~iivv 167 (463)
....+..+.|+||+|... ++.. +...+ ...+-++||+|+..|.. ....+. +...+++. . ++
T Consensus 369 ~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~it-g-vI 444 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGLT-G-IT 444 (503)
T ss_dssp HHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCCS-E-EE
T ss_pred HHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCCC-E-EE
Confidence 012456789999999633 2222 11111 13678899999987621 122222 33456777 3 68
Q ss_pred EeccCcc
Q psy3124 168 VNKADLV 174 (463)
Q Consensus 168 vNKiD~~ 174 (463)
+||+|..
T Consensus 445 lTKLD~t 451 (503)
T 2yhs_A 445 LTKLDGT 451 (503)
T ss_dssp EECGGGC
T ss_pred EEcCCCc
Confidence 9999975
No 228
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.04 E-value=1.5e-05 Score=64.73 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=71.4
Q ss_pred eeeeEEEEecCCCce---EEEEEEecccccCCCEEEEecCCce-eeEEEEEEeeccccceEEccCCeEEEEecccccc-C
Q psy3124 246 ILPIDNAIGVPGRGS---VCIGTIKQGTIKRNDEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLK-Q 320 (463)
Q Consensus 246 ~~~I~~~~~~~~~G~---vv~G~v~~G~l~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~~-~ 320 (463)
...|.++|.++..|+ +...+|..|.|+.+..++++..+.- ...++.||.++..+|.++.+|.-|++.+.+ -+ |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCCC
Confidence 467889999988888 9999999999999999999976643 366899999999999999999999999874 46 8
Q ss_pred cccceEEec
Q psy3124 321 IERGMLLAK 329 (463)
Q Consensus 321 i~~G~vl~~ 329 (463)
++.||+|-.
T Consensus 90 ik~GDiIE~ 98 (120)
T 2crv_A 90 FKPGDQVIC 98 (120)
T ss_dssp CCTTEEEEE
T ss_pred CCCCCEEEE
Confidence 999998853
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1.5e-05 Score=77.79 Aligned_cols=128 Identities=19% Similarity=0.149 Sum_probs=72.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCcc-ccccccccCCChhh------hhcCceEEeeEEEE------------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKS-KFITFDQIDRAPEE------KARGITINIAHVEY------------ 103 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~-~~~~~~~~d~~~~e------~~~g~Ti~~~~~~~------------ 103 (463)
.+.-.++++|+.|+|||||++.|.+.....+.. .............+ +..|+.+-......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345789999999999999999998876654322 11111111111111 22343322110000
Q ss_pred -ecCCeeEEEEeCCChhh----hHHHHHh--hcccCCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCeEEEEEeccCcc
Q psy3124 104 -STNTRHYAHTDCPGHAD----YIKNMIS--GASQMDGAIVVVAASEGQMPQTREHLLLS-KQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 104 -~~~~~~i~liDtPGh~~----f~~~~~~--~~~~aD~ailVVda~~g~~~qt~e~l~~~-~~l~ip~iivvvNKiD~~ 174 (463)
...+..+.++||+|... +...+.. .+-.+|-.++|+|+..+. +..+.+... ...++. ++++||+|..
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it--~iilTKlD~~ 281 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID--GIILTKLDAD 281 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC--EEEEECGGGC
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC--EEEEeCcCCc
Confidence 01245678899999633 3333221 123479999999998763 333333333 346665 4789999975
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.00 E-value=6.7e-06 Score=81.84 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=68.8
Q ss_pred EEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc-CCCeEEEEEeccCcccHH-HHHHHHHHHH
Q psy3124 110 YAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI-GIDNVVVYVNKADLVDRE-IMELVELEVR 187 (463)
Q Consensus 110 i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l-~ip~iivvvNKiD~~~~~-~~~~i~~~i~ 187 (463)
+.-+|+| +++|...+......+|++++|+|+.+.......+. ...+ +.| +++|+||+|+.+.+ ..+.+.+.+.
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l---~~~l~~~p-iilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGL---PRFAADNP-ILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSH---HHHCTTSC-EEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHH---HHHhCCCC-EEEEEEChhcCCCccCHHHHHHHHH
Confidence 4445555 77888877666688999999999987542111111 1112 556 88999999998542 1234445556
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+.++..|+. ..+++++||+++ .++++|++.|...
T Consensus 126 ~~~~~~g~~--~~~v~~iSA~~g----------~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 126 RMAEELGLC--PVDVCLVSAAKG----------IGMAKVMEAINRY 159 (369)
T ss_dssp HHHHTTTCC--CSEEEECBTTTT----------BTHHHHHHHHHHH
T ss_pred HHHHHcCCC--cccEEEEECCCC----------CCHHHHHHHHHhh
Confidence 666666653 246899999999 8999999998764
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.99 E-value=3.2e-06 Score=88.66 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=58.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEE-ecCCeeEEEEeCCChhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY-STNTRHYAHTDCPGHAD 120 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-~~~~~~i~liDtPGh~~ 120 (463)
..+..+|+++|.+++|||||+|+|++... + +. .... .....+|+..- ...+ ...+..+.|+||||..+
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~--~---~~---~~~t-t~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKK--G---FS---LGST-VQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSS--C---SC---CCCS-SSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCC--c---cc---cCCC-CCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence 34678999999999999999999986411 0 00 0000 00011122110 0011 23567899999999654
Q ss_pred hHH------HHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH
Q psy3124 121 YIK------NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ 158 (463)
Q Consensus 121 f~~------~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~ 158 (463)
..+ ..+.++...-..++|+|+..++..+..+++..+..
T Consensus 104 ~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 104 VEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp GGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred ccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 211 11111111111267888888888777776655433
No 232
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=2e-05 Score=76.80 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=69.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChh-------hh-----hcCceEE-eeEE--------
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPE-------EK-----ARGITIN-IAHV-------- 101 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~-------e~-----~~g~Ti~-~~~~-------- 101 (463)
.+...|+++|+.|+||||++..|.......|..-... ..|.... +. ..++.+- ....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli--d~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~ 180 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA--AADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVV 180 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHH
Confidence 3456799999999999999999988766554321110 1111100 00 2233322 0000
Q ss_pred --EE---ecCCeeEEEEeCCChhhhHHHHHhh-------c-----ccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE
Q psy3124 102 --EY---STNTRHYAHTDCPGHADYIKNMISG-------A-----SQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164 (463)
Q Consensus 102 --~~---~~~~~~i~liDtPGh~~f~~~~~~~-------~-----~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~i 164 (463)
.+ ...++.+.||||||.......++.. + ..+|.+++|+|+..+ ..+.+.+.... ..++..
T Consensus 181 ~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~ 257 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVS 257 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCC
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCc
Confidence 00 1246789999999965542222111 1 247999999999865 22222222111 112323
Q ss_pred EEEEeccCccc
Q psy3124 165 VVYVNKADLVD 175 (463)
Q Consensus 165 ivvvNKiD~~~ 175 (463)
-+|+||+|...
T Consensus 258 GvVltk~d~~~ 268 (320)
T 1zu4_A 258 GIILTKMDSTS 268 (320)
T ss_dssp EEEEECGGGCS
T ss_pred EEEEeCCCCCC
Confidence 36899999763
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.94 E-value=2.1e-05 Score=78.23 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=68.3
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc-CCCeEEEEEeccCcccHH-HHHHHHHHHHHHH
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI-GIDNVVVYVNKADLVDRE-IMELVELEVRDVL 190 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l-~ip~iivvvNKiD~~~~~-~~~~i~~~i~~~l 190 (463)
+++ ..++|.+.+....+.+|++++|+|+.+.. .+. .-.+...+ +.| +++|+||+|+.+.. ..+.+.+.+...+
T Consensus 52 v~~-~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~-~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 52 VSL-TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSW-LPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp -----CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHC-CTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccH-HHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHH
Confidence 343 35778877777777889999999998721 110 00111112 566 88999999998532 2234445556666
Q ss_pred HHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhc
Q psy3124 191 TAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKH 233 (463)
Q Consensus 191 ~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~ 233 (463)
+..|+. ..+++++||+++ .|+++|++.|...
T Consensus 127 ~~~g~~--~~~v~~iSA~~g----------~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 127 KQLGLK--PEDVFLISAAKG----------QGIAELADAIEYY 157 (368)
T ss_dssp HHTTCC--CSEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHcCCC--cccEEEEeCCCC----------cCHHHHHhhhhhh
Confidence 676653 246899999999 9999999998763
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.90 E-value=1.8e-05 Score=76.47 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred hcccCCEEEEEEeCCCCCcH--HHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 128 GASQMDGAIVVVAASEGQMP--QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~~~--qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
.+.++|.+++|+|+..+.+. ...+.+..+...++| .++|+||+|++++...++..+++.+.++..| .+++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-----~~v~~~ 156 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDTIQAYAEDYRNIG-----YDVYLT 156 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-----CCEEEC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhhHHHHHHHHHHHHhCC-----CeEEEE
Confidence 57889999999999976653 333455555667888 5789999999965332122234455555555 468999
Q ss_pred cchhh
Q psy3124 206 SALLA 210 (463)
Q Consensus 206 Sa~~~ 210 (463)
||.++
T Consensus 157 sa~~~ 161 (307)
T 1t9h_A 157 SSKDQ 161 (307)
T ss_dssp CHHHH
T ss_pred ecCCC
Confidence 99988
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.86 E-value=6.4e-05 Score=72.62 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=68.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCc-cccccccccCCCh-hh------hhcCceEEeeEEE----------E--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGK-SKFITFDQIDRAP-EE------KARGITINIAHVE----------Y-- 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~-~~~~~~~~~d~~~-~e------~~~g~Ti~~~~~~----------~-- 103 (463)
+.-.|+++|+.|||||||++.|.+.....+. ...... ...+.. .+ +..++.+-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~-D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG-DTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC-CCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee-cCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999877654432 111110 111110 00 1123322111000 0
Q ss_pred -ecCCeeEEEEeCCChhhh----HHHH---H----hh-cccCCEEEEEEeCCCCCcHHHHHHH-HHHHHcCCCeEEEEEe
Q psy3124 104 -STNTRHYAHTDCPGHADY----IKNM---I----SG-ASQMDGAIVVVAASEGQMPQTREHL-LLSKQIGIDNVVVYVN 169 (463)
Q Consensus 104 -~~~~~~i~liDtPGh~~f----~~~~---~----~~-~~~aD~ailVVda~~g~~~qt~e~l-~~~~~l~ip~iivvvN 169 (463)
...+..+.++||+|..+. ..+. . ++ ...++.+++++|+..+.. ..+.+ .+....++. ++++|
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t--~iivT 255 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT--GVIVT 255 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS--EEEEE
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc--EEEEE
Confidence 012345779999995432 2111 1 11 234788899999987643 22223 233455766 47899
Q ss_pred ccCcc
Q psy3124 170 KADLV 174 (463)
Q Consensus 170 KiD~~ 174 (463)
|.|..
T Consensus 256 h~d~~ 260 (304)
T 1rj9_A 256 KLDGT 260 (304)
T ss_dssp CTTSS
T ss_pred CCccc
Confidence 99976
No 236
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.86 E-value=1.4e-05 Score=76.43 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=34.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHA 119 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~ 119 (463)
...+++++|.+|+|||||+|+|++... .......|.|.+.....+ +..+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI---------------AKTGDRPGITTSQQWVKV---GKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC---------------C------------CCEEE---TTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce---------------eecCCCCCeeeeeEEEEe---CCCEEEEECcCcC
Confidence 468999999999999999999975410 111122355555433322 3478999999963
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.85 E-value=4.8e-05 Score=73.51 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=68.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCCh---------hhhhcCceEEeeE-------E------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAP---------EEKARGITINIAH-------V------ 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~-------~------ 101 (463)
+...|+++|+.|+||||++..|.+.....|..-... ..|... .-...|+.+-... .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv--~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA--AADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE--ccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 456789999999999999999988776554321110 011110 0011233321100 0
Q ss_pred EEecCCeeEEEEeCCChhhhHHH-------HHhhc-----ccCCEEEEEEeCCCCCcHHHHHHHH-HHHHcCCCeEEEEE
Q psy3124 102 EYSTNTRHYAHTDCPGHADYIKN-------MISGA-----SQMDGAIVVVAASEGQMPQTREHLL-LSKQIGIDNVVVYV 168 (463)
Q Consensus 102 ~~~~~~~~i~liDtPGh~~f~~~-------~~~~~-----~~aD~ailVVda~~g~~~qt~e~l~-~~~~l~ip~iivvv 168 (463)
.....+..+.|+||||....... ....+ ..+|.+++|+|+..+. ...+... +....++. -+|+
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i~--gvVl 256 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNVT--GIIL 256 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCCC--EEEE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCCC--EEEE
Confidence 00124567999999995332222 12222 2478999999997431 1222222 22345665 3678
Q ss_pred eccCcc
Q psy3124 169 NKADLV 174 (463)
Q Consensus 169 NKiD~~ 174 (463)
||+|..
T Consensus 257 Tk~D~~ 262 (306)
T 1vma_A 257 TKLDGT 262 (306)
T ss_dssp ECGGGC
T ss_pred eCCCCc
Confidence 999986
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.84 E-value=9.1e-05 Score=66.67 Aligned_cols=122 Identities=12% Similarity=0.081 Sum_probs=75.0
Q ss_pred EEEEE-cCCCCCHHHHHHHHHhhhHhcCccccccccccCCChh------hhhcCceEEeeEE-EE------ecCCeeEEE
Q psy3124 47 NVGTI-GHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPE------EKARGITINIAHV-EY------STNTRHYAH 112 (463)
Q Consensus 47 ~I~i~-G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~------e~~~g~Ti~~~~~-~~------~~~~~~i~l 112 (463)
.|+++ +..|+||||+.-.|...+...|..-... ..|.... ....+..+-.... .+ -...+.+.+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli--D~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVV--DTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE--ECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 46666 5578999999999987776665321110 0111000 0111111110000 00 013578999
Q ss_pred EeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC-----CCeEEEEEeccCcc
Q psy3124 113 TDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG-----IDNVVVYVNKADLV 174 (463)
Q Consensus 113 iDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~-----ip~iivvvNKiD~~ 174 (463)
+|||+... ..+...+..+|.+++++.++... ..+...+..+...+ ++ +.+|+|+.|..
T Consensus 81 iD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~ 143 (206)
T 4dzz_A 81 VDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIEM 143 (206)
T ss_dssp EECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCTT
T ss_pred EECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCCC
Confidence 99998763 34455667799999999998877 77777777777654 45 58899999964
No 239
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=8.5e-05 Score=78.75 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=40.5
Q ss_pred CeeEEEEeCCChhh------------hHHHHHhh-ccc-CCEEEEEEeCCCCCcHH-HHHHHHHHHHcCCCeEEEEEecc
Q psy3124 107 TRHYAHTDCPGHAD------------YIKNMISG-ASQ-MDGAIVVVAASEGQMPQ-TREHLLLSKQIGIDNVVVYVNKA 171 (463)
Q Consensus 107 ~~~i~liDtPGh~~------------f~~~~~~~-~~~-aD~ailVVda~~g~~~q-t~e~l~~~~~l~ip~iivvvNKi 171 (463)
...+.++|.||... -+..++.. +.. ...++++++++.....+ ..+.+..+...|.+ .|+|+||.
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecch
Confidence 35699999997432 23344444 333 46677777776554322 22333333344666 78999999
Q ss_pred CcccH
Q psy3124 172 DLVDR 176 (463)
Q Consensus 172 D~~~~ 176 (463)
|+++.
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 99854
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.75 E-value=8.4e-05 Score=74.96 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=70.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC---hhh------hhcCceEEeeEE-------------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA---PEE------KARGITINIAHV------------- 101 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~e------~~~g~Ti~~~~~------------- 101 (463)
+...|+++|+.|+||||++..|.......|..-... ..|.. ..+ ...|+.+-....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv--d~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV--AADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe--eccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 456789999999999999999987776554321110 01111 001 112333221100
Q ss_pred EEecCCeeEEEEeCCChhhh----HHHH--HhhcccCCEEEEEEeCCCCCcHHHHHHHHH-HHHcCCCeEEEEEeccCcc
Q psy3124 102 EYSTNTRHYAHTDCPGHADY----IKNM--ISGASQMDGAIVVVAASEGQMPQTREHLLL-SKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 102 ~~~~~~~~i~liDtPGh~~f----~~~~--~~~~~~aD~ailVVda~~g~~~qt~e~l~~-~~~l~ip~iivvvNKiD~~ 174 (463)
.+...++.+.||||||.... ...+ +..+..+|.++||+|+..+. ...+.+.. ...+++. -||+||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~~l~i~--GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKVGVT--GLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHTCCC--EEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHhcCCce--EEEEeCcCCc
Confidence 01125678999999996432 2222 12233689999999998652 12222222 2234443 4689999976
No 241
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.73 E-value=3.7e-05 Score=69.38 Aligned_cols=103 Identities=12% Similarity=0.021 Sum_probs=63.6
Q ss_pred ChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH----HHH-HH---cCCCeEEEEEecc-CcccHHHHHHHHHHHH
Q psy3124 117 GHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHL----LLS-KQ---IGIDNVVVYVNKA-DLVDREIMELVELEVR 187 (463)
Q Consensus 117 Gh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l----~~~-~~---l~ip~iivvvNKi-D~~~~~~~~~i~~~i~ 187 (463)
|+..+.+.+..+...+|++|+|||+++......++-+ .++ .. .++| ++|+.||. |+...-...+ +.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams~~E----I~ 185 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPCFY----LA 185 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCCHHH----HH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCCHHH----HH
Confidence 7777777888888999999999999875432244433 122 11 3677 88889995 6753222222 22
Q ss_pred HHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 188 DVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 188 ~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+.|.-..++ ...-+.++||++| +|+.+-+++|.+.+.
T Consensus 186 e~L~L~~l~-R~W~Iq~csA~TG----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHTTTTT
T ss_pred HHcCCcCCC-CCEEEEEeECCCC----------cCHHHHHHHHHHHHH
Confidence 322211122 3566889999999 999999999987553
No 242
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.65 E-value=0.00013 Score=75.07 Aligned_cols=104 Identities=17% Similarity=0.325 Sum_probs=81.4
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCCCceEEEEEEecccccCCCEEEEecCCce-eeEEEEEEeeccccce
Q psy3124 223 IHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSK-FTCTISEIQVFQKKVS 301 (463)
Q Consensus 223 i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~-~~~~V~sI~~~~~~v~ 301 (463)
++++.+++...++ |.....---...|..+|+.+..|.++..+|..|+|+.|..+.+...+.. ...+|.||+.++++|+
T Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~ 466 (501)
T 1zo1_I 388 IDEVKAAMSGMLS-PELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVN 466 (501)
T ss_dssp HHHTHHHHTTTSS-TTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEES
T ss_pred HHHHHHHHHhhcC-ceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCcccc
Confidence 4555556655443 3333333334567789999888999999999999999999999866542 3678999999999999
Q ss_pred EEccCCeEEEEeccccccCcccceEEec
Q psy3124 302 EARAGDNVGVLLRNVKLKQIERGMLLAK 329 (463)
Q Consensus 302 ~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 329 (463)
++..|+-|++.+.+. ++++.||+|-.
T Consensus 467 e~~~g~ecgi~~~~~--~~~~~gd~~~~ 492 (501)
T 1zo1_I 467 EVRNGMECGIGVKNY--NDVRTGDVIEV 492 (501)
T ss_dssp EEETTCCEEEEBCCC--TTCCTTCEEEE
T ss_pred EECCCCEEEEEEcCc--CCCCCCCEEEE
Confidence 999999999999854 59999998854
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.55 E-value=6.9e-05 Score=72.13 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=68.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHh-cCcc-ccccccccCCChhh------hhcCceEEeeE-------EEEecCCe
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAK-IGKS-KFITFDQIDRAPEE------KARGITINIAH-------VEYSTNTR 108 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~-~g~~-~~~~~~~~d~~~~e------~~~g~Ti~~~~-------~~~~~~~~ 108 (463)
+...|+++|+.|+||||++..|...... .|.. .............| ...|+...... .--...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3568999999999999999999887763 5521 11100000000000 01122111000 00012456
Q ss_pred eEEEEeCCChhhh----HHHHHhhcc--cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 109 HYAHTDCPGHADY----IKNMISGAS--QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 109 ~i~liDtPGh~~f----~~~~~~~~~--~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+.|+||||.... +..+...+. .+|.+++|+|+..+.. ...+.......+++. -+++||+|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~--giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN--QYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC--EEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC--EEEEeCCCccc
Confidence 8999999996543 223333332 3678899999987531 111212222223444 35679999873
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.48 E-value=0.00056 Score=65.91 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=70.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC-ccccccccccCCCh------hh-hhcCceEEeeEEE-E-----------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG-KSKFITFDQIDRAP------EE-KARGITINIAHVE-Y----------- 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g-~~~~~~~~~~d~~~------~e-~~~g~Ti~~~~~~-~----------- 103 (463)
+.-.++++|+.|||||||++.|.+.....+ +...... ...+.. .- ...++.+-..... .
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~-d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG-DTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC-CCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee-cccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 346789999999999999999988765443 2221111 111110 00 1224443221111 0
Q ss_pred --ecCCeeEEEEeCCChhhhH----HHH---Hh----h-cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEe
Q psy3124 104 --STNTRHYAHTDCPGHADYI----KNM---IS----G-ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVN 169 (463)
Q Consensus 104 --~~~~~~i~liDtPGh~~f~----~~~---~~----~-~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvN 169 (463)
...+....++|+.|..++. .++ .. + +..++-.+||+|+..|...... ...+....++. ++++|
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t--~iiiT 254 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT--GLILT 254 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC--EEEEE
T ss_pred HHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCC--EEEEe
Confidence 0123456789999964432 111 11 1 1346778999998877644332 12233456776 46799
Q ss_pred ccCcc
Q psy3124 170 KADLV 174 (463)
Q Consensus 170 KiD~~ 174 (463)
|+|..
T Consensus 255 hlD~~ 259 (302)
T 3b9q_A 255 KLDGS 259 (302)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 99986
No 245
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.48 E-value=0.00012 Score=67.83 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=50.4
Q ss_pred cCCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 105 ~~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
...+.+.|||||+.... .+...+..+|.+++|+.++......+...+..+..++++.+.+++||.+.
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 35678999999986543 33455678999999999865444555566667778888878899999984
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.46 E-value=5.5e-05 Score=71.50 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHAD 120 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~ 120 (463)
.+++++|.+|+|||||+|+|.+.... ......|.|........ +..+.++||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~---------------~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS---------------SVGAQPGITKGIQWFSL---ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCEEEC---TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc---------------ccCCCCCCccceEEEEe---CCCEEEEECCCccc
Confidence 68999999999999999999854210 00111244433322221 34689999999654
No 247
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.41 E-value=0.0011 Score=62.21 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=49.1
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
..+.+.|||||+...........+..+|.+|+|+.+.......+.+.+..+...+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45789999999865432222222336899999999887666667777777888898844489999874
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.41 E-value=0.00043 Score=66.52 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=68.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCC------h-hhhhcCceEEeeEE-------------EE
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRA------P-EEKARGITINIAHV-------------EY 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~------~-~e~~~g~Ti~~~~~-------------~~ 103 (463)
+...++++|+.|+||||++..|.+.....|..-........+. . .....++.+-.... ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999877665432111000000000 0 00112333221100 00
Q ss_pred ecCCeeEEEEeCCChhhh----HHHHHhh--cccCCEEEEEEeCCCCCcHHHHHHHHHHH-HcCCCeEEEEEeccCccc
Q psy3124 104 STNTRHYAHTDCPGHADY----IKNMISG--ASQMDGAIVVVAASEGQMPQTREHLLLSK-QIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 104 ~~~~~~i~liDtPGh~~f----~~~~~~~--~~~aD~ailVVda~~g~~~qt~e~l~~~~-~l~ip~iivvvNKiD~~~ 175 (463)
...++.+.|+||||.... +..+... ...+|.+++|+|+..+ ..+.+.+.... .+++. -+++||+|...
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~--givlnk~d~~~ 251 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGDA 251 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCC--EEEEECGGGCS
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCC--EEEEECCCCCc
Confidence 114678999999985322 2222111 1258999999998754 22223332222 34443 36899999863
No 249
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.39 E-value=0.0007 Score=70.30 Aligned_cols=106 Identities=13% Similarity=0.208 Sum_probs=85.4
Q ss_pred ccHHHHHHHhhhcCCCCCCCCCCCceeeeEEEEecCC---CceEEEEEEecccccCCCEEEEecCCce-eeEEEEEEeec
Q psy3124 221 PSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPG---RGSVCIGTIKQGTIKRNDEAELLGFNSK-FTCTISEIQVF 296 (463)
Q Consensus 221 ~~i~~Ll~~L~~~l~~p~~~~~~p~~~~I~~~~~~~~---~G~vv~G~v~~G~l~~gd~v~i~~~~~~-~~~~V~sI~~~ 296 (463)
.-++++.+++...++ |.....-.-.+.|..+|.++. .|+++.++|..|+|+.|..+.++..+.. ...++.||..+
T Consensus 425 ~l~~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~ 503 (537)
T 3izy_P 425 RLIEDLQEELSSRLP-CIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHH 503 (537)
T ss_dssp CSHHHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHhccC-CceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhccc
Confidence 456788788777554 443334445778899999874 6799999999999999999999986642 46789999999
Q ss_pred cccceEEccCCeEEEEeccccccCcccceEEe
Q psy3124 297 QKKVSEARAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 297 ~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
.++|.++..|.-||+.+.+ .-.+++.||+|-
T Consensus 504 k~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 504 KDDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp SCCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred CcccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 9999999999999999985 135999999873
No 250
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00067 Score=66.87 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=70.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC-ccccccccccCCChh---h------hhcCceEEeeEEE--E--------
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG-KSKFITFDQIDRAPE---E------KARGITINIAHVE--Y-------- 103 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g-~~~~~~~~~~d~~~~---e------~~~g~Ti~~~~~~--~-------- 103 (463)
+.-.++++|+.|||||||++.|.+.....+ +.... ..|.... + ...++.+-..... +
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~---g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA---AGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE---CCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe---cccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 456789999999999999999988765443 22111 1121110 0 1234433221110 0
Q ss_pred ----ecCCeeEEEEeCCChhhhHHHH-------H----hh-cccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEE
Q psy3124 104 ----STNTRHYAHTDCPGHADYIKNM-------I----SG-ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVY 167 (463)
Q Consensus 104 ----~~~~~~i~liDtPGh~~f~~~~-------~----~~-~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivv 167 (463)
...+....++|+.|..++.... . ++ +..++-++||+|+..|...... ...+....++. +++
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~t--~ii 309 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT--GLI 309 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC--EEE
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCCe--EEE
Confidence 0123456799999964432111 1 11 2347788999998877543322 22333456776 468
Q ss_pred EeccCcc
Q psy3124 168 VNKADLV 174 (463)
Q Consensus 168 vNKiD~~ 174 (463)
+||+|..
T Consensus 310 iThlD~~ 316 (359)
T 2og2_A 310 LTKLDGS 316 (359)
T ss_dssp EESCTTC
T ss_pred EecCccc
Confidence 9999986
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.35 E-value=0.0011 Score=65.26 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=55.6
Q ss_pred hcccCCEEEEEEeCCCCCc--HHHHHHHHHHHHcCCCeEEEEEeccCcccHHHHHHHHHHHHHHHHHcCCCCCCCcEEEc
Q psy3124 128 GASQMDGAIVVVAASEGQM--PQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205 (463)
Q Consensus 128 ~~~~aD~ailVVda~~g~~--~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~~~i~~~i~~~l~~~g~~~~~~pvi~~ 205 (463)
-+.++|.+++| +|..+.. ....+.|..+...++| .++|+||+|+++++..+.+ +++...+...| ++++++
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~~~~~-~~~~~~y~~~G-----~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEGMDFV-NEQMDIYRNIG-----YRVLMV 198 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHHHHHHH-HHHHHHHHTTT-----CCEEEC
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCchhHHHH-HHHHHHHHhCC-----CcEEEE
Confidence 35789999876 4444432 2334455566778998 5789999999976432222 23334444555 469999
Q ss_pred cchhhccCCCCCCCCccHHHHHHHh
Q psy3124 206 SALLALQGDSSELGEPSIHRLLDAL 230 (463)
Q Consensus 206 Sa~~~~~~~~~~~~~~~i~~Ll~~L 230 (463)
||.++ .++++|...+
T Consensus 199 Sa~~~----------~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQ----------DGLKPLEEAL 213 (358)
T ss_dssp BTTTT----------BTHHHHHHHH
T ss_pred ecCCC----------cCHHHHHHhc
Confidence 99998 7777776543
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.28 E-value=0.0018 Score=58.74 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=72.7
Q ss_pred EEEEE-cCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhh---h-cCceEEeeE---EEEecCCeeEEEEeCCCh
Q psy3124 47 NVGTI-GHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEK---A-RGITINIAH---VEYSTNTRHYAHTDCPGH 118 (463)
Q Consensus 47 ~I~i~-G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~---~-~g~Ti~~~~---~~~~~~~~~i~liDtPGh 118 (463)
.|+++ +..|+||||+.-.|...+...|+.-.. .+|....-. . .....++.. ..--...+.+.++|||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g~Vlli---D~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~ 78 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQGETLLI---DGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQAR 78 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTSCEEEE---EECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEE---ECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCC
Confidence 35565 568999999999998877766621111 111110000 0 000000000 000023567999999997
Q ss_pred -hhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHc-CCCeEEEEEeccCccc
Q psy3124 119 -ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI-GIDNVVVYVNKADLVD 175 (463)
Q Consensus 119 -~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l-~ip~iivvvNKiD~~~ 175 (463)
... .+...+..+|.+|+++.++......+...+..+... +.+ +.+++|+.|...
T Consensus 79 ~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 79 PEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp CSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred cCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 443 234456789999999998765455566666666664 666 779999999753
No 253
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.00022 Score=67.46 Aligned_cols=105 Identities=11% Similarity=-0.003 Sum_probs=67.6
Q ss_pred CCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHH----HHH---H-HcCCCeEEEEEec-cCcccHHHHHHHHHH
Q psy3124 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHL----LLS---K-QIGIDNVVVYVNK-ADLVDREIMELVELE 185 (463)
Q Consensus 115 tPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l----~~~---~-~l~ip~iivvvNK-iD~~~~~~~~~i~~~ 185 (463)
..|+..+...+..+...+|++|+|||+++......++-+ .++ . ..++| ++|+.|| .|+...-...+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams~~E---- 268 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPCFY---- 268 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCCHHH----
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCCHHH----
Confidence 346778888888888999999999999875432233311 222 1 14788 8888997 57763322222
Q ss_pred HHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhhhcCC
Q psy3124 186 VRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235 (463)
Q Consensus 186 i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~~~l~ 235 (463)
+.+.|.-..+. ...-|.++||.+| +|+.+-+++|.+.+.
T Consensus 269 I~e~L~L~~l~-r~W~Iq~csA~tG----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 269 LAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHHHHSC
T ss_pred HHHHcCCccCC-CcEEEEecccCCC----------cCHHHHHHHHHHHHH
Confidence 22322211122 3466889999999 999999999988654
No 254
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.08 E-value=0.0021 Score=67.68 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=70.4
Q ss_pred CceeeeE--EEEecCCCceEEEEEEecccccCCCEEEEecCCceeeEEEEEEeeccccceEEccCCeEEEEeccccc-cC
Q psy3124 244 PFILPID--NAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL-KQ 320 (463)
Q Consensus 244 p~~~~I~--~~~~~~~~G~vv~G~v~~G~l~~gd~v~i~~~~~~~~~~V~sI~~~~~~v~~a~aG~~v~l~l~~~~~-~~ 320 (463)
|..+.|. .+|+.+. |.|+..+|..|.|+.|..+.+ +.+. ...+|.||+.++++|+++..|+-||+.+.+... .+
T Consensus 463 ~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~-~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~ 539 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE-TVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKT 539 (594)
T ss_dssp CEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC-EEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc-EEEEEehhcccCccccccCCCCEEEEEEeCcccCCC
Confidence 4455554 6898877 899999999999999999988 6554 678999999999999999999999999986322 68
Q ss_pred cccceEEecC
Q psy3124 321 IERGMLLAKA 330 (463)
Q Consensus 321 i~~G~vl~~~ 330 (463)
++.||+|-..
T Consensus 540 ~~~~d~~~~~ 549 (594)
T 1g7s_A 540 IHEGDTLYVD 549 (594)
T ss_dssp BCTTCEEEEC
T ss_pred CCCCCEEEEE
Confidence 9999998643
No 255
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.06 E-value=0.00097 Score=67.53 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
+.+..-|+|+|..++|||||+|.|.+..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 4567889999999999999999998764
No 256
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.05 E-value=0.0026 Score=59.51 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=49.9
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCccc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~ 175 (463)
.+.+.|||+|+... ......+..+|.+|+|+.+.......+...+..+...+.+.+-+|+|+.|...
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccc
Confidence 56799999998654 34455667899999999886544455566666666678777779999998754
No 257
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.91 E-value=0.002 Score=61.55 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=52.4
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.++|||||....... ....+..+|.+|+|+.+.........+.+..+...+++.+-+|+|++|.-
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 35699999999754422 22334669999999999877777788888888888988778999999875
No 258
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.87 E-value=0.0048 Score=59.24 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=43.5
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEEeccCc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ----IGIDNVVVYVNKADL 173 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~----l~ip~iivvvNKiD~ 173 (463)
.+.+.|||||+..... .+...+..+|.+|+|+.+...-...+.+.+..+.. .+++.+-+|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 5789999999854321 22345678999999998765333444455555554 345534489999985
No 259
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.85 E-value=0.003 Score=57.98 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=50.2
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.+.++|+|+... ..+...+..+|.+++|+.+.......+.+.+..+...+.+.+-+|+|+.|..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46799999998654 3445667889999999988754445566666777777888788999999865
No 260
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.85 E-value=0.009 Score=57.28 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=50.9
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.++|||||+....... ...+..+|.+|+|+.+......+..+.+..+...+++.+-+|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d~-~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTHH-HHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHHH-HHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 356899999997543222 2234679999999999887777888888888888887555889999864
No 261
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.84 E-value=0.0052 Score=58.09 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=50.0
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.++|||||+...... ....+..+|.+|+|+.+.........+.+..+...+++.+-+|+|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 35789999999654321 12223568999999999887777788888888888888555899999875
No 262
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.71 E-value=0.002 Score=59.48 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=48.9
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC--CCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG--IDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~--ip~iivvvNKiD~~ 174 (463)
.+.+.|+|||+.... .....+..+|.+++|+.+.......+...+..+...+ .+.+-+|+|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 467999999986543 3344577899999999987544455666777777776 45578999999865
No 263
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.70 E-value=0.012 Score=56.04 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=45.6
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH------cCCCeEEEEEeccCccc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ------IGIDNVVVYVNKADLVD 175 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~------l~ip~iivvvNKiD~~~ 175 (463)
.+.+.|||||+..... +...+..+|.+|+|+.+.......+...+..+.. .+++.+-+|+|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4679999999875543 2334456999999999876655545444444433 25664558999999754
No 264
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.60 E-value=0.0059 Score=56.76 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=45.5
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCC--------CeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI--------DNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~i--------p~iivvvNKiD~~ 174 (463)
.+.+.++|||+.... .+...+..+|.+++|+++...-...+...+..+...+. ..+.+|+|+.|..
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 678999999985542 44556678999999999865433444445555544431 3477899999853
No 265
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.51 E-value=0.0019 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...++++|..|||||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 557899999999999999999875
No 266
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.32 E-value=0.013 Score=54.81 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcC--CCeEEEEEeccCcc
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG--IDNVVVYVNKADLV 174 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~--ip~iivvvNKiD~~ 174 (463)
..+.+.|||||+.... .+...+..+|.+|+|+.++..-.......+..+..++ ++ +.+|+|+.+..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECTT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccCc
Confidence 3567999999986543 2445566799999999986544444555556666664 45 67899999543
No 267
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.20 E-value=0.0022 Score=61.02 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.8
Q ss_pred CeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCC
Q psy3124 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAAS 142 (463)
Q Consensus 107 ~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~ 142 (463)
.+.+.|||||+.. ...+...+..+|.+|+|+.+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4679999999875 334556778899999999875
No 268
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.83 E-value=0.0017 Score=62.48 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
...++++|++|+|||||++.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3578999999999999999997653
No 269
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.82 E-value=0.044 Score=51.13 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=40.0
Q ss_pred CeeEEEEeCCChhhh---HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEEeccCcc
Q psy3124 107 TRHYAHTDCPGHADY---IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ----IGIDNVVVYVNKADLV 174 (463)
Q Consensus 107 ~~~i~liDtPGh~~f---~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~----l~ip~iivvvNKiD~~ 174 (463)
.+.+.||||||.... ...+ ....+|.+++|+.+.......+...+..+.. .+++.+-+|+|+.+..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~--~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPI--REGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHH--HTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CCCEEEEeCCchhhhhhhhhhh--hHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 478999999985321 1111 1246999999998864333333333344433 2566556899998753
No 270
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.78 E-value=0.0054 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.+++++|+.|+|||||++.|.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 271
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=95.60 E-value=0.11 Score=48.01 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=61.6
Q ss_pred CeeEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcccHHHH
Q psy3124 107 TRHYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIM 179 (463)
Q Consensus 107 ~~~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~~~~~~ 179 (463)
...+.+||.||.-- ....+... ...-+|||+++..|....+...+..+...+++ .=+|+|+.+-.+ ...
T Consensus 131 ~~D~vlIEGagGl~~pl~~~~~~adlA~~--l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~-~~~ 206 (242)
T 3qxc_A 131 TYDLVIVEGAGGLCVPITLEENMLDFALK--LKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT-AFH 206 (242)
T ss_dssp TCSEEEEECCSCTTCBSSSSCBHHHHHHH--HTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC-HHH
T ss_pred cCCEEEEECCCCccccccccchHHHHHHH--cCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc-chh
Confidence 56789999997321 11111111 12348999999888666666667777788999 889999998653 222
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEccchhhccCCCCCCCCccHHHHHHHhh
Q psy3124 180 ELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALD 231 (463)
Q Consensus 180 ~~i~~~i~~~l~~~g~~~~~~pvi~~Sa~~~~~~~~~~~~~~~i~~Ll~~L~ 231 (463)
+ ....+|++.+- ....|++++- ..++.|++.+.
T Consensus 207 ~----~~~p~le~~~~-~~~~~~~~~~--------------~~~~~l~~~~~ 239 (242)
T 3qxc_A 207 S----ISLPYIELFNT-RSNNPIVIFQ--------------QSLKVLMSFAL 239 (242)
T ss_dssp H----HTHHHHHHHHH-HCSSCCEEGG--------------GCHHHHHHHHH
T ss_pred h----hhHHHHHHhcC-cccCCceecc--------------ccHHHHHHHHh
Confidence 2 33344443321 1235565542 56777777654
No 272
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.57 E-value=0.02 Score=54.30 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=39.1
Q ss_pred CeeEEEEeCCChhh---hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEEeccCc
Q psy3124 107 TRHYAHTDCPGHAD---YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ----IGIDNVVVYVNKADL 173 (463)
Q Consensus 107 ~~~i~liDtPGh~~---f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~----l~ip~iivvvNKiD~ 173 (463)
.+.+.||||||... +... .....+|.+++|+.+.......+...+..+.. .+++.+-+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~--~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMP--IRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHH--HHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhh--hhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 57899999998532 1111 11256999999998764322323333333332 366655688999874
No 273
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.43 E-value=0.01 Score=56.92 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAIT 66 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~ 66 (463)
...++++|++|+|||||++.|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999998
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.40 E-value=0.0069 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..++++|+.|||||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998764
No 275
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.34 E-value=0.0085 Score=52.66 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..++++|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.26 E-value=0.014 Score=52.60 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
.+...|+|+|++|||||||++.|.+....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999887654
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.23 E-value=0.0099 Score=51.29 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=24.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcCc
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGK 74 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~ 74 (463)
--.++++|+.|||||||++.|.+.....|.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~ 62 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGN 62 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCCe
Confidence 446899999999999999999987633343
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.11 E-value=0.011 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998865
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.08 E-value=0.011 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
.++++|+.|||||||++.|.+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 479999999999999999987654
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.07 E-value=0.013 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
+...|+++|+.|||||||++.|.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998754
No 281
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.04 E-value=0.032 Score=56.95 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=56.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcCccccccccccCCChhhhhcCceEEeeEEEEecCCeeEEEEeCCChhhh--
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADY-- 121 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPGh~~f-- 121 (463)
....|+++|.+|+||||+...|.......+...... ..+....+. .|. .....++|..|.+.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~--~~d~~r~~~-~g~------------~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF--NVGQYRRDM-VKT------------YKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EHHHHHHHH-HCS------------CCCGGGGCTTCHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE--ecchhhhhh-ccC------------CCcccccCCCCHHHHHH
Confidence 357899999999999999999976543221100000 000000000 010 012245788887332
Q ss_pred HHHH--------HhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC
Q psy3124 122 IKNM--------ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGID 162 (463)
Q Consensus 122 ~~~~--------~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip 162 (463)
.... ...+...++.++|+|++......-...+..++..+.+
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~ 151 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK 151 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCc
Confidence 2222 3334446788999999876443333444556666766
No 282
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.02 E-value=0.66 Score=45.15 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=35.5
Q ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 132 MDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 132 aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+.+++|+-+..-....+++.+..+...++|..-+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 4788888887765567788888999999999888999998764
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.02 E-value=0.014 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..++++|+.|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998763
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.01 E-value=0.015 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456999999999999999999775
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.98 E-value=0.014 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
+...|+++|++|||||||++.|.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999997653
No 286
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.92 E-value=0.44 Score=44.16 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=73.2
Q ss_pred eeEEEEEcC-CCCCHHHHHHHHHhhhHhcCccc--ccc----c--cccCCChhhhhcCceEEeeEEEEe-----------
Q psy3124 45 HCNVGTIGH-VDHGKTTLTAAITKVAAKIGKSK--FIT----F--DQIDRAPEEKARGITINIAHVEYS----------- 104 (463)
Q Consensus 45 ~~~I~i~G~-~~aGKSTLi~~L~~~~~~~g~~~--~~~----~--~~~d~~~~e~~~g~Ti~~~~~~~~----------- 104 (463)
...|.|.|. .|+|||++.-.|...+.+.|..- ++. . ...|..-.....|.......+.|.
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~ 105 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEH 105 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHH
Confidence 456888887 69999999999988877766321 110 0 001111111222322211111110
Q ss_pred ------------------cCCeeEEEEeCCChh------h-h-HHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH
Q psy3124 105 ------------------TNTRHYAHTDCPGHA------D-Y-IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ 158 (463)
Q Consensus 105 ------------------~~~~~i~liDtPGh~------~-f-~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~ 158 (463)
.....+.+||.||.- + + ...+.. ...+-+|||+|+..|....+...+..+..
T Consensus 106 ~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~--~l~~pVILV~~~~~g~i~~~~lt~~~l~~ 183 (251)
T 3fgn_A 106 AGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAV--DVAAAALVVVTADLGTLNHTKLTLEALAA 183 (251)
T ss_dssp TTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHH--HTTCEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHH--HcCCCEEEEEcCCCccHHHHHHHHHHHHh
Confidence 134678999999732 1 1 111111 22456899999987766666666666777
Q ss_pred cCCCeEEEEEeccC
Q psy3124 159 IGIDNVVVYVNKAD 172 (463)
Q Consensus 159 l~ip~iivvvNKiD 172 (463)
.+++-.=+|+||..
T Consensus 184 ~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 184 QQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCCEEEEEEEEEC
T ss_pred CCCCEEEEEEECCC
Confidence 88886678899984
No 287
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.89 E-value=1 Score=43.17 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=34.5
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 133 DGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
+.+++|+-+..-....+++.+..+...|+|..-+|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 588888887655567788888899999999878999998754
No 288
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.83 E-value=0.014 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..++++|+.|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999998865
No 289
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.79 E-value=0.056 Score=54.49 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhHhc-Ccc-----c--cccccccCCChhhhhcCceEEeeEEEEec---CCeeE
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAAKI-GKS-----K--FITFDQIDRAPEEKARGITINIAHVEYST---NTRHY 110 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~~~-g~~-----~--~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i 110 (463)
+.+..-|+|+|...+|||+|+|.|.+..... |.. . ...+.. .....-..+|+-+-...+.... .+..+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~-~~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSW-RGGSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCC-CCSSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCcee-CCCCCCcCceEEEecCcccccCCCCCeeEE
Confidence 4577889999999999999999886543211 100 0 000000 0011223345544322222222 23458
Q ss_pred EEEeCCChhhh-----HHHHHhhcc--cCCEEEEEEeCCCCCcHHHHHHHHHH
Q psy3124 111 AHTDCPGHADY-----IKNMISGAS--QMDGAIVVVAASEGQMPQTREHLLLS 156 (463)
Q Consensus 111 ~liDtPGh~~f-----~~~~~~~~~--~aD~ailVVda~~g~~~qt~e~l~~~ 156 (463)
.++||.|..+- ....+.++. .++..|+=+. ..+..+..++|.+.
T Consensus 143 lllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~--~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLS--QNVQEDDLQHLQLF 193 (457)
T ss_dssp EEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEE--SSCCHHHHHHHHHH
T ss_pred EEEeccCCCCcccCccccHHHHHHHHHHhhheeeccc--ccCCHHHHHHHHHH
Confidence 89999995432 122333333 2555554443 34556666666543
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.77 E-value=0.015 Score=52.97 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-..++++|+.|||||||++.|.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34689999999999999999988654
No 291
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.72 E-value=0.15 Score=53.44 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=33.3
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 133 DGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
+.+++|+.+.......+...+..+...|++..-+|+|+++..
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 478999988765556777778888888988777889999854
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.70 E-value=0.023 Score=49.25 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|++|||||||.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 293
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.65 E-value=0.015 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999998763
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.59 E-value=0.022 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
...|+++|++|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998764
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.55 E-value=0.023 Score=50.82 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
+..-|+++|++|+|||||++.|.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998653
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.53 E-value=0.015 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
...++++|++|+|||||+.++.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999987754
No 297
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.51 E-value=0.018 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998763
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.50 E-value=0.024 Score=50.37 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
.++++|+.|+|||||++.|.+...+.|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 489999999999999999998776444
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.50 E-value=0.027 Score=49.06 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
...++++|+.|||||||+.+|...+...|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 45789999999999999999987765544
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.49 E-value=0.022 Score=51.45 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCc
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGK 74 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~ 74 (463)
-.++++|+.|||||||++.|.+...+.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl~p~~G~ 51 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQALQSKQ 51 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcCCe
Confidence 35899999999999999999887333343
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.45 E-value=0.032 Score=49.70 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
+...|+++|++|||||||...|.+.+...|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G 53 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKG 53 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 356799999999999999999987765434
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.44 E-value=0.024 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..-|+++|++|||||||++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998764
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.43 E-value=0.02 Score=49.87 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAIT 66 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~ 66 (463)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458999999999999999753
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.39 E-value=0.022 Score=52.70 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998764
No 305
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.39 E-value=0.021 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999988754
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.33 E-value=0.023 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..|+++|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 307
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.33 E-value=0.032 Score=48.83 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
...++++|+.|+|||||+++|.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3568999999999999999998765443
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.24 E-value=0.022 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998763
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.22 E-value=0.026 Score=49.61 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
..++++|++|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999965
No 310
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.21 E-value=0.023 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998763
No 311
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.18 E-value=0.022 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.++++|+.|||||||++.|++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 312
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.17 E-value=0.023 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|++..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998764
No 313
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.17 E-value=0.021 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|++..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998763
No 314
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.16 E-value=0.024 Score=52.55 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.14 E-value=0.022 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|++..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998764
No 316
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.14 E-value=2.3 Score=40.84 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=32.8
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 133 DGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
+.+++|+.+.......+.+.+..+...|++..-+|+|+..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~ 261 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLL 261 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 4788888876655567788888889999997778999998
No 317
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.12 E-value=0.024 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999998764
No 318
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.10 E-value=0.025 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.08 E-value=0.038 Score=53.22 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=24.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
++...|+|+|++|||||||++.|.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 44678999999999999999999876543
No 320
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.06 E-value=0.028 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-.++++|+.|||||||++.|.+.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999885
No 321
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.05 E-value=0.026 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998764
No 322
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.05 E-value=0.03 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..|+++|.+||||||+...|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999654
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.04 E-value=0.04 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.....|+++|.+||||||+...|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999643
No 324
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.03 E-value=0.029 Score=48.12 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAI 65 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L 65 (463)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 325
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.99 E-value=0.027 Score=55.24 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..++++|++|+|||||++.|.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999998753
No 326
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.97 E-value=0.05 Score=47.66 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=24.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
+...|+++|.+||||||+...|...+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999998765543
No 327
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.95 E-value=0.027 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 458999999999999999998764
No 328
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.95 E-value=0.031 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++|+|++|+|||||++.|.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4579999999999999999999876
No 329
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.93 E-value=0.028 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3589999999999999999988753
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.92 E-value=0.032 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
.+|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999976
No 331
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.92 E-value=0.028 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|++..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.90 E-value=0.02 Score=50.02 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
..++++|+.|||||||++.|.+.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 368999999999999999998876543
No 333
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.86 E-value=0.032 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-.++++|+.|||||||++.|++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999886
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.82 E-value=0.03 Score=50.06 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
...|+++|++|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999997654
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.80 E-value=0.043 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
..|+++|.+||||||+...|.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999977554
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.80 E-value=0.042 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.005 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
..|++.|.+||||||+...|.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999976544
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.77 E-value=0.038 Score=49.30 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 338
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.77 E-value=0.031 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998764
No 339
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.76 E-value=0.034 Score=55.23 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhcCc
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKIGK 74 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~g~ 74 (463)
-.++++|+.|||||||++.|.+.....|.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~~~G~ 76 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLNTEGE 76 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSEEEEE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCeE
Confidence 45899999999999999999987653343
No 340
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.76 E-value=0.045 Score=51.28 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
+.-.++++|+.|||||||++.|.+....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3457999999999999999999887643
No 341
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.75 E-value=0.031 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|++..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999998764
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.75 E-value=0.031 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999998764
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.73 E-value=0.036 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.70 E-value=0.035 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAIT 66 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~ 66 (463)
...|+++|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 345
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.69 E-value=0.038 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.|+++|.+||||||+...|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999764
No 346
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.68 E-value=0.032 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998763
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.63 E-value=0.043 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
...|+++|+.|||||||++.|.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997753
No 348
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.62 E-value=0.043 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 349
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.60 E-value=0.037 Score=49.28 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+|||||||...|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.59 E-value=0.045 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+|+++|++||||||+...|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.58 E-value=0.052 Score=48.47 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+...|+++|.+|||||||++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999765
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.57 E-value=0.05 Score=48.45 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
...|++.|.+||||||+...|.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999976543
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.56 E-value=0.056 Score=48.19 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
+...|+++|..|||||||++.|.+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999987654
No 354
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.55 E-value=0.54 Score=49.18 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=34.8
Q ss_pred cCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 131 QMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 131 ~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
.+|.+++|+.+.......+...+..+...|++..-+|+|+.+-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 45899999887655556677777888889998778899998854
No 355
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.53 E-value=0.22 Score=45.34 Aligned_cols=29 Identities=14% Similarity=-0.151 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
-.-+.+.|++|+||||++-.+.......|
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45678899999999998877765554444
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.46 E-value=0.041 Score=48.74 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q psy3124 48 VGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~ 68 (463)
|+++|++|+|||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999754
No 357
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.46 E-value=0.22 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
..-|+++|.+||||||+...|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999865
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.45 E-value=0.043 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
++|+++|.+||||||+...|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999954
No 359
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.44 E-value=0.052 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
...|+++|.+||||||+...|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.43 E-value=0.054 Score=52.30 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
+...-|+++|++|||||||++.|.+...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467899999999999999999976643
No 361
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.38 E-value=0.051 Score=47.07 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..|+++|.+||||||+...|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.37 E-value=0.027 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAIT-KVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~-~~~ 69 (463)
..++++|+.|||||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999998 653
No 363
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.34 E-value=0.054 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999654
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.33 E-value=0.061 Score=48.05 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
...|+++|.+||||||+.+.|......
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999765443
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.33 E-value=0.04 Score=51.65 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.++++|+.|||||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998875
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.31 E-value=0.047 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
++|+++|.+||||||+...|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999954
No 367
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.28 E-value=0.31 Score=47.59 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
..+.+.|++|+|||||+-.+......
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999998765443
No 368
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.28 E-value=0.053 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+|+++|++||||||+...|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999654
No 369
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.27 E-value=0.24 Score=45.80 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=42.8
Q ss_pred CCeeEEEEeCCChhhhHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHH------cCCCeEEEEEeccCcc
Q psy3124 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ------IGIDNVVVYVNKADLV 174 (463)
Q Consensus 106 ~~~~i~liDtPGh~~f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~------l~ip~iivvvNKiD~~ 174 (463)
..+.+.|||||+..... +...+..+|.+|+|+.+.......+...+..+.. .+++.+-+|+|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 45789999999865432 3345567999999999875333333333333322 2455334889999864
No 370
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.24 E-value=0.053 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998643
No 371
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.24 E-value=0.049 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
++...|++.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999998764
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.22 E-value=0.068 Score=50.87 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=24.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
++...|+|+|++|||||||++.|.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34678999999999999999999876654
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.18 E-value=0.071 Score=47.54 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
...|+++|.+||||||+.+.|.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999976543
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.17 E-value=0.053 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+..+|+++|.+||||||+...|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999654
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.15 E-value=0.044 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998763
No 376
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.15 E-value=0.063 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+|+++|.+||||||+...|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999654
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.14 E-value=0.066 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
.|++.|.+||||||+.+.|.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999976543
No 378
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.14 E-value=0.042 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..++++|++|+|||||++.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 46899999999999999999765
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.13 E-value=0.034 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+....|+++|++||||||+...|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999764
No 380
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.12 E-value=0.051 Score=46.16 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
...++++|++|+|||||+..+.+....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999876543
No 381
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=93.10 E-value=0.13 Score=39.51 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=44.8
Q ss_pred ecccccCCCEEEEe-cCCceeeEEEEEEee-ccccceEE-ccCCeEEEEeccccccCcccceEEe
Q psy3124 267 KQGTIKRNDEAELL-GFNSKFTCTISEIQV-FQKKVSEA-RAGDNVGVLLRNVKLKQIERGMLLA 328 (463)
Q Consensus 267 ~~G~l~~gd~v~i~-~~~~~~~~~V~sI~~-~~~~v~~a-~aG~~v~l~l~~~~~~~i~~G~vl~ 328 (463)
....+.+||.|.++ |.+.....+|..|.. .+++++.| .||+.+.+.+. ..+..||+|-
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dilR 86 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMMR 86 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEEE
Confidence 47789999999975 555466778889874 56789998 99999988653 4567788774
No 382
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.10 E-value=0.062 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|.+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 568999999999999999999753
No 383
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.07 E-value=0.046 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 458999999999999999998764
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.06 E-value=0.067 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
.|++.|..||||||+++.|......
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999776543
No 385
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.06 E-value=0.048 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.....|+++|++|||||||...|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 386
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.05 E-value=0.049 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-.++++|++|||||||+..|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 387
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.05 E-value=0.17 Score=49.44 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
..+.|.|++|+|||||+.++......
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999765443
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.02 E-value=0.077 Score=46.11 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
...|+++|..||||||+.+.|.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999999876543
No 389
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.00 E-value=0.061 Score=52.77 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
.-.++++|+.|||||||++.|.+.....
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3489999999999999999998876654
No 390
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.97 E-value=0.074 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999643
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.95 E-value=0.05 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
-.++++|+.|||||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 392
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.93 E-value=0.032 Score=53.57 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3568999999999999999998764
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.92 E-value=0.064 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 394
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.91 E-value=0.066 Score=51.32 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
+...|+++|+.|||||||++.|.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999987643
No 395
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.86 E-value=0.051 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357999999999999999998764
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.79 E-value=0.067 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999643
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.75 E-value=0.072 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+.++|+++|.+||||||+...|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999643
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.68 E-value=0.12 Score=46.72 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=24.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
....+.+.|++|+|||||+..+.......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999997765543
No 399
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.67 E-value=0.057 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3589999999999999999987643
No 400
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.67 E-value=0.049 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..+++++|+.|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.64 E-value=0.071 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+|++.|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999653
No 402
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.62 E-value=0.059 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3589999999999999999988643
No 403
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.57 E-value=0.083 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
....|+++|.+||||||+...|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.56 E-value=0.071 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAIT 66 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~ 66 (463)
...|+++|+.|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 405
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.55 E-value=0.053 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
.-.++++|+.|||||||++.|.+...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34799999999999999999987643
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.50 E-value=0.061 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3589999999999999999988643
No 407
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.50 E-value=0.05 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4799999999999999999987643
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.49 E-value=0.071 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
++|+++|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999653
No 409
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.47 E-value=0.062 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3589999999999999999988653
No 410
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.39 E-value=0.074 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
...|+++|.+||||||+...|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999964
No 411
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.38 E-value=0.065 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 358999999999999999998764
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.35 E-value=0.032 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
.|++.|..||||||+++.|......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999876543
No 413
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.33 E-value=0.066 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4589999999999999999988653
No 414
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.28 E-value=0.094 Score=51.75 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
+.-.++++|+.|||||||++.|.+.....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 34579999999999999999998876543
No 415
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.24 E-value=0.075 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+|+++|.+|+||||+...|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999654
No 416
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.21 E-value=0.071 Score=46.18 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+|+++|.+||||||+...|.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999654
No 417
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.14 E-value=0.086 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
++|+++|++||||+|....|.+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999643
No 418
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.12 E-value=0.11 Score=48.38 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
...|+++|.+||||||+...|...+...|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 35799999999999999999977644433
No 419
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.01 E-value=4 Score=39.56 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=33.4
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCc
Q psy3124 133 DGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADL 173 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~ 173 (463)
+.+++|+.+..-....+++.+..+..+|++..-+|+|+..-
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 272 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLF 272 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcc
Confidence 57888887765555677888888999999988899999875
No 420
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.94 E-value=0.24 Score=46.87 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
.++...+.+.|++|+|||||+..|.+...
T Consensus 44 ~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 44 NRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 44556899999999999999999987643
No 421
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.88 E-value=0.11 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
...|+++|..||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999964
No 422
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.87 E-value=0.11 Score=46.19 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-+..|+++|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999998643
No 423
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.86 E-value=0.96 Score=44.31 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
..+.+.|++++|||||+-.+.....
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH
Confidence 3578899999999999999875543
No 424
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.79 E-value=0.098 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999653
No 425
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.79 E-value=1.4 Score=42.30 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
.+-+.|++|+|||||+-++......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999998887654433
No 426
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.74 E-value=1.8 Score=41.85 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccC
Q psy3124 133 DGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKAD 172 (463)
Q Consensus 133 D~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD 172 (463)
+.+++|..+..-....+++.+..+...|++..-+|+|++.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~ 262 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLL 262 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCc
Confidence 4778888776545577888889999999998889999986
No 427
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.73 E-value=0.056 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 358999999999999999998764
No 428
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.70 E-value=0.11 Score=48.06 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
....|+|.|.+||||||+...|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999653
No 429
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.69 E-value=0.076 Score=46.12 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=16.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|+++|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999643
No 430
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.66 E-value=0.077 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.+++++|+.|||||||+++|++.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999998764
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.62 E-value=0.11 Score=46.94 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.++|+++|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999654
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.62 E-value=0.11 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.|+++|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 433
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.62 E-value=0.095 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.+|+|+.|+|||||+.+|...+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997654
No 434
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.57 E-value=0.094 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..|+++|.+||||||+...|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999654
No 435
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.54 E-value=0.11 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-+|++.|.+||||||+...|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
No 436
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.52 E-value=0.61 Score=42.44 Aligned_cols=67 Identities=13% Similarity=-0.019 Sum_probs=44.6
Q ss_pred CCeeEEEEeCCChhh-------hHHHHHhhcccCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEEeccCcc
Q psy3124 106 NTRHYAHTDCPGHAD-------YIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174 (463)
Q Consensus 106 ~~~~i~liDtPGh~~-------f~~~~~~~~~~aD~ailVVda~~g~~~qt~e~l~~~~~l~ip~iivvvNKiD~~ 174 (463)
..+.+.+||+||.-. ....+... ...-+|||+++..+....+...+..+...+++-.=+++|+.|-.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~--l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKA--LQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHH--HTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHH--cCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 456799999997321 11111111 12348999999877666666666777788988666889999753
No 437
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.52 E-value=0.12 Score=46.58 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
-.++++|++|+|||||+..|......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999865443
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.52 E-value=0.15 Score=45.65 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
...|+++|.+||||||+...|.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999987654
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.49 E-value=0.15 Score=46.49 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
....|++.|.+||||||+++.|.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3567999999999999999999876544
No 440
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.42 E-value=0.6 Score=45.59 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
..+.+.|.+|+|||||+-.|......
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999998765443
No 441
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.40 E-value=1 Score=43.54 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
--+.+.|.+|+|||||+-.+......
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999988765443
No 442
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.33 E-value=0.13 Score=51.54 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
+.-.++++|+.|||||||++.|.+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 445799999999999999999987653
No 443
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.17 E-value=0.11 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..|+++|.+||||||+...|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999653
No 444
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.16 E-value=0.056 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999998764
No 445
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.08 E-value=0.79 Score=40.29 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.+.+.|++|+|||+|+..+....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999997654
No 446
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.01 E-value=0.1 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.+|+++|.+||||||+...|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998653
No 447
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.97 E-value=0.14 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.|+++|++|||||||...|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999654
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.88 E-value=0.15 Score=46.85 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|++.|++||||||+...|.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 449
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.12 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
--.++++|+.|||||||++.|++...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 45699999999999999999988754
No 450
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.77 E-value=0.27 Score=48.42 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=24.3
Q ss_pred CCceeEEEEEc-CCCCCHHHHHHHHHhhhHhcC
Q psy3124 42 SLVHCNVGTIG-HVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 42 ~~~~~~I~i~G-~~~aGKSTLi~~L~~~~~~~g 73 (463)
.+....|++++ ..|+||||+.-.|...+...|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g 172 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMG 172 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCC
Confidence 34456788886 788999999999976665554
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.65 E-value=0.14 Score=43.32 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.+|+|+.|+|||||+.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999996443
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.64 E-value=0.16 Score=46.28 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+|+++|.+||||||+...|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.51 E-value=0.14 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998865
No 454
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.49 E-value=0.13 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+|+++|.+||||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999653
No 455
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.49 E-value=0.15 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
--+++++|+.|+|||||++.|++.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999876
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.44 E-value=0.14 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
-.++++|+.|||||||++.|.+...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4689999999999999999987653
No 457
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.42 E-value=1.4 Score=42.21 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+...|.+.|++|+|||+|+.++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4457999999999999999999654
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.40 E-value=0.22 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
...|.++|++||||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999643
No 459
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.33 E-value=0.2 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAIT 66 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~ 66 (463)
....|+++|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999986
No 460
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.26 E-value=0.18 Score=47.79 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhHhc
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAAKI 72 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~~~ 72 (463)
--++++|++|+|||||+..|.+.....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 358999999999999999998776543
No 461
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.13 E-value=0.16 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.+++.|++|+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999765
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.04 E-value=0.13 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
+--.++++|+.|||||||++.|++..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578999999999999999998764
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.78 E-value=0.21 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
.+...|+++|.+|+||||+...|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.76 E-value=0.16 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 48 VGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 48 I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
++|+|+.|||||||+++|+-.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999986543
No 465
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.64 E-value=1.3 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
...|+++|.+|+||||+...|...+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999997654
No 466
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.59 E-value=1.7 Score=41.45 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
--+.+.|.+|+|||||+-.+.....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999875443
No 467
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.58 E-value=0.18 Score=46.39 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.+.++|++|+|||||+..|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999765
No 468
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.53 E-value=0.18 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4468999999999999999998764
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.51 E-value=0.21 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-+++++++|.+||||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999653
No 470
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.51 E-value=0.16 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3468999999999999999998764
No 471
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.48 E-value=0.17 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
--.++++|+.|||||||++.|.+...
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999987643
No 472
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.26 E-value=0.54 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.+.+.|++|+|||||..++...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999998654
No 473
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.20 E-value=0.23 Score=49.00 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+...++++|++|+|||||+..|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999864
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.19 E-value=0.2 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|||||||++.|.+..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998864
No 475
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.16 E-value=0.21 Score=50.40 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
--+++++|+.|+|||||++.|.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999999875
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.16 E-value=0.3 Score=44.06 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=24.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
...-|++.|..||||||++..|...+...|
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 346799999999999999999977655433
No 477
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.12 E-value=0.24 Score=43.83 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.|++.|.+||||||+...|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999653
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.03 E-value=0.87 Score=42.23 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 42 SLVHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 42 ~~~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
..+...+.+.|++|+|||+|+.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999999654
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.02 E-value=0.19 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3468999999999999999998865
No 480
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.94 E-value=0.22 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.227 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
..+++.|++|+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998764
No 481
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.89 E-value=0.94 Score=42.51 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+...+.+.|++|+|||||+.++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.78 E-value=0.2 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
.++++|+.|||||||++.|++..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.73 E-value=1.5 Score=42.52 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
....+.+.|++|+|||||+..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999997654
No 484
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.70 E-value=0.16 Score=53.30 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3468999999999999999998764
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.63 E-value=0.16 Score=48.26 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
...|+|.|+.||||||+.+.|....
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999997643
No 486
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.62 E-value=0.23 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
-.++++|+.|+|||||++.|.+..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998864
No 487
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.61 E-value=0.83 Score=42.56 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+...+.+.|++|+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999999999654
No 488
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.61 E-value=0.31 Score=42.95 Aligned_cols=25 Identities=36% Similarity=0.256 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
..+.+.|++|+|||||+.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999976644
No 489
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.57 E-value=0.24 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.+.++|++|+|||||+..|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999765
No 490
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.52 E-value=0.18 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4578999999999999999998764
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.52 E-value=0.99 Score=43.27 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 43 LVHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 43 ~~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
.+...|.+.|++|+|||+|+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34578999999999999999999764
No 492
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.49 E-value=0.36 Score=41.46 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhHh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVAAK 71 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~~~ 71 (463)
...+.+.|++|+|||||+..+......
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999776443
No 493
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.47 E-value=0.25 Score=44.00 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.41 E-value=0.28 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITK 67 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~ 67 (463)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.37 E-value=0.18 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
+...|++.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998654
No 496
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.36 E-value=0.25 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q psy3124 46 CNVGTIGHVDHGKTTLTAAITKV 68 (463)
Q Consensus 46 ~~I~i~G~~~aGKSTLi~~L~~~ 68 (463)
-.++++|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999763
No 497
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.36 E-value=0.36 Score=44.31 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=25.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 44 VHCNVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 44 ~~~~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
...-|++.|..||||||++..|...+...|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 346799999999999999999987765544
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.34 E-value=1.4 Score=38.42 Aligned_cols=27 Identities=19% Similarity=0.030 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhHhcC
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAAKIG 73 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~~~g 73 (463)
-+.+.|++|+||||++-.+.......|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g 31 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 468999999999999866654433333
No 499
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.96 E-value=0.15 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhh
Q psy3124 45 HCNVGTIGHVDHGKTTLTAAITKVA 69 (463)
Q Consensus 45 ~~~I~i~G~~~aGKSTLi~~L~~~~ 69 (463)
--.++++|+.|||||||++.|.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3468999999999999999997764
No 500
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.96 E-value=0.27 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhH
Q psy3124 47 NVGTIGHVDHGKTTLTAAITKVAA 70 (463)
Q Consensus 47 ~I~i~G~~~aGKSTLi~~L~~~~~ 70 (463)
.++++|+.|||||||++.|.+...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 479999999999999999988643
Done!