RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3124
(463 letters)
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 611 bits (1579), Expect = 0.0
Identities = 208/389 (53%), Positives = 287/389 (73%), Gaps = 2/389 (0%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAITK+ A+ G +KF +++ID APEE+ARGITIN AHVEYS
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS 62
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T RHYAHTDCPGHADY+KNMI+G + +DG I+VVAA++G MPQTREHLLL++QIG+++V
Sbjct: 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHV 122
Query: 165 VVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
VVYVNKAD V D E++ELVELE+R++LT +GY G+ TP + GSAL AL+ ELG S+
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSV 182
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
+LLDA+D +IP P RD+ PF+LP+++ +PGRG+V GT+++G +K+ DE E LG +
Sbjct: 183 QKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHS 242
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
++ I++F K + A AGDN+G L+R +K + + RG+++AK ++Q H + EA++
Sbjct: 243 KNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQV 302
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+L+K EGGR+KP S ++ MFS TW++ R+ LP + MPGE +T+ L M
Sbjct: 303 YILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILP-PGKELAMPGEDLKLTLILRQPMI 361
Query: 404 LSKGQTFTIRENNKLVATGIVTKVLGNME 432
L KGQ FT+R+ N+ + TG+VT E
Sbjct: 362 LEKGQRFTLRDGNRTIGTGLVTDTPAMTE 390
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 575 bits (1485), Expect = 0.0
Identities = 192/395 (48%), Positives = 270/395 (68%), Gaps = 12/395 (3%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKV-AAKIGKSKFITFDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T V AA+ + + ID+APEE+ARGITIN AHVEY
Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 130
Query: 164 VVVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSS------ 216
+VV++NK D+V D E+++LVE+EVRD+L Y + GD P + GSALLAL+
Sbjct: 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 190
Query: 217 --ELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRN 274
I LLDA+D++IP PVRD+ PF++P+++ + GRG+V G I++G +K
Sbjct: 191 GENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 250
Query: 275 DEAELLGFNSK-FTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
DE E++G + ++ +++ +K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSI 310
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGT 393
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP M+MPG++ T
Sbjct: 311 TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLP-PGVEMVMPGDNVT 369
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
T+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 370 FTVELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 404
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 600 bits (1547), Expect = 0.0
Identities = 205/407 (50%), Positives = 278/407 (68%), Gaps = 5/407 (1%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAIT V AK FDQID APEEKARGITIN +HVEY
Sbjct: 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 355
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T TRHYAH DCPGHADY+KNMI+GA+QMDGAI+VVAA++G MPQTREH+LL +Q+G+ +
Sbjct: 356 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 415
Query: 165 VVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
+V++NK D+V D E++ELVE+EVR++L+ Y + GD+TP V GSAL AL+GD+ E I
Sbjct: 416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE--WEAKI 473
Query: 224 HRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN 283
L LD +IP P R I PF+LPI++ + GRG+V G +++G IK +E E++G
Sbjct: 474 LELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 533
Query: 284 SKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEI 343
T + +++F+K + E RAG+NVGVLLR +K ++IERG +LAK T++ H ++E+E+
Sbjct: 534 ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEV 593
Query: 344 YLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMY 403
Y+LSK EGGR+ P Y Q + RT +V ++LP E M+MPG++ + +TL++ +
Sbjct: 594 YILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELP-EGVEMVMPGDNIKMVVTLIHPIA 652
Query: 404 LSKGQTFTIRENNKLVATGIVTKVLGNMEIPQHNLGMIRTKEVKTKR 450
+ G F IRE + V G+V KVL G +K
Sbjct: 653 MDDGLRFAIREGGRTVGAGVVAKVLSGAS-GAAGGGGSGGGGSMSKT 698
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 437 bits (1125), Expect = e-152
Identities = 70/392 (17%), Positives = 147/392 (37%), Gaps = 47/392 (11%)
Query: 40 KSSLV-----HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGI 94
S LV NV IG G+T+L A + K +G
Sbjct: 11 SSGLVPRGSHMANVAIIGTEKSGRTSLAANLGK------------------------KGT 46
Query: 95 TINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLL 154
+ +I R+ D + +K++I+ + D A++ + +G T E ++
Sbjct: 47 SSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPP-QGLDAHTGECII 105
Query: 155 LSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGD 214
+G + ++ + ++D ++ ++ +++ + + G + + + + +
Sbjct: 106 ALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITS--GTVLQDWECISLNTNKSAKNP 163
Query: 215 SSELGEPSIHRLLDALDKHIPNPVRDITS-PFILPIDNAIGVPGRGSVCIGTIKQGTIKR 273
G + ++ + + I ++ S P + ID+A V G+G V +G +KQG K
Sbjct: 164 --FEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKD 221
Query: 274 NDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
D+ ++ + IQ + A AG VG+ L+NV+ K IERG +++ + +
Sbjct: 222 KDKTKIFPLDRDIEIR--SIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEIV 279
Query: 334 QMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDG---MLMPGE 390
E + +K +F + VR++ D PG
Sbjct: 280 TTDYTLECTVSKFTKKIEPASVL-------HLFVGLQSEPVRVEKILVDGNEVEEAKPGS 332
Query: 391 HGTVTMTLLYKMYLSKGQTFTIRENNKLVATG 422
+ ++ K+ SK F + +
Sbjct: 333 TCVLELSGNKKLAYSKQDRFLLANLDLTQRFA 364
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 437 bits (1126), Expect = e-151
Identities = 107/403 (26%), Positives = 177/403 (43%), Gaps = 46/403 (11%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
+ N+G GH+DHGKTTL+ +T++A + D+ PE + RGITI+I +
Sbjct: 19 NINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFK 69
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGHAD I+ ++S A +D A++VV A EG QT EH+L+ I +
Sbjct: 70 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 129
Query: 165 VVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIH 224
VV + K+D E ++ E+ ++ +L + ++ N+ + SA D
Sbjct: 130 VV-ITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVD---------- 177
Query: 225 RLLDALDKHI--PNPVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGF 282
L + + + +R+ S F +P+D+A + G G+V GTI +G +K DE ++L
Sbjct: 178 ELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPI 237
Query: 283 NSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT-LQMHNRYEA 341
N IQ F++ V EA+AGD VG+ ++ V KQI RG +L DT LQ ++ A
Sbjct: 238 NMSTKVR--SIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVA 295
Query: 342 EIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDG----------MLMPGEH 391
+I + + P K + V + ++ G
Sbjct: 296 KIKISDIFKYN-LTP---KMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNE 351
Query: 392 GTVTMTLLYKMYLSKGQTFTIR------ENNKLVATGIVTKVL 428
L K+ G I ++ G++ +
Sbjct: 352 XYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFK 394
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 391 bits (1008), Expect = e-134
Identities = 98/417 (23%), Positives = 168/417 (40%), Gaps = 60/417 (14%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSK---FITFDQIDRAPEEKARGITINIAHV 101
N+G +GHVDHGKTTL AIT + I + + PE +
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGS 67
Query: 102 EYST-NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG-QMPQTREHLLLSKQI 159
+ R + D PGH + M+SGA+ MDGAI+VVAA+E PQTREH + I
Sbjct: 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127
Query: 160 GIDNVVVYVNKADLVDR-EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSEL 218
G+ N+++ NK D+V + E + + G +N P + SAL + DS
Sbjct: 128 GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT---KGTWAENVPIIPVSALHKINIDS--- 181
Query: 219 GEPSIHRLLDALDKHIPNPVRDITSPFILPID-----NAIGVP---GRGSVCIGTIKQGT 270
L++ ++++I P RD++ ++ + N G +G V G+I QG
Sbjct: 182 -------LIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGL 234
Query: 271 IKRNDEAELLGF-----NSKFTC-----TISEIQVFQKKVSEARAGDNVGV---LLRNVK 317
K + E ++L K + IS I+ ++ EA+ G V + L ++
Sbjct: 235 FKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLT 294
Query: 318 LKQIERGMLLAKADTL-QMHNRYEAEIYLLSKA----EGGRYKPITSKYIQQMFSRTWNV 372
G ++ AD + + LL + E + PI +K + +
Sbjct: 295 KADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTT 354
Query: 373 QVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQT-FTI--RENNK--LVATGIV 424
G++ + + + L + + I + + ++ G+V
Sbjct: 355 L----------GIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLV 401
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 382 bits (984), Expect = e-130
Identities = 115/437 (26%), Positives = 172/437 (39%), Gaps = 91/437 (20%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G +GHVDHGKTTLT A+T V D EE RGITI I +
Sbjct: 10 EVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAE 56
Query: 105 T-----------------------NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAA 141
R + D PGH + M++GAS MDGAI+V+AA
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
Query: 142 SEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVDRE-IMELVELEVRDVLTAYGYDGDN 199
+E PQTREHL+ + IG N+++ NK +LVD+E +E + G +N
Sbjct: 117 NEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE---GTVAEN 173
Query: 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRG 259
P + SAL D L+ A++ IP P RD P + + + V G
Sbjct: 174 APIIPISALHGANIDV----------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPG 223
Query: 260 S--------VCIGTIKQGTIKRNDEAELLGF-----NSKFTC-----TISEIQVFQKKVS 301
+ V G+I QG +K DE E+ + + I +Q + V
Sbjct: 224 TPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVE 283
Query: 302 EARAGDNVGV---LLRNVKLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKAEGGR---- 353
EA G VGV L + + G ++ K L + + E++LL + G
Sbjct: 284 EAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELK 343
Query: 354 YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTI- 412
+PI K + + T G++ + + L + G I
Sbjct: 344 VEPIKRKEVLLLNVGTARTM----------GLVTGLGKDEIEVKLQIPVCAEPGDRVAIS 393
Query: 413 RENNK---LVATGIVTK 426
R+ L+ GI+ +
Sbjct: 394 RQIGSRWRLIGYGIIKE 410
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 368 bits (948), Expect = e-125
Identities = 106/436 (24%), Positives = 164/436 (37%), Gaps = 91/436 (20%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G +GHVDHGKT+LT A+T V DR EE RGI+I + + +
Sbjct: 8 EVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCE 54
Query: 105 T-----------------------NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAA 141
R + D PGH + M+SGAS MDGAI+V+AA
Sbjct: 55 IRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAA 114
Query: 142 SEGQ-MPQTREHLLLSKQIGIDNVVVYVNKADLVDRE-IMELVELEVRDVLTAYGYDGDN 199
+E PQT+EHL+ + +GID +++ NK DLVD + E E V G +N
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK---GTIAEN 171
Query: 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRG 259
P + SA +I LL A+ IP P RD + + + + + G
Sbjct: 172 APIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPG 221
Query: 260 S--------VCIGTIKQGTIKRNDEAELLG-----FNSKFTC-----TISEIQVFQKKVS 301
+ V G I QG K DE E+ +K I + +
Sbjct: 222 TEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILR 281
Query: 302 EARAGDNVGV---LLRNVKLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKAEGGR---- 353
+A G +GV L + G ++ TL + + LL + G +
Sbjct: 282 KAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELK 341
Query: 354 YKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTFTI- 412
+P+ + + + T G++ + L + G I
Sbjct: 342 IEPLRTGEVLMLNIGTATTA----------GVITSARGDIADIKLKLPICAEIGDRVAIS 391
Query: 413 -RENNK--LVATGIVT 425
R ++ L+ G +
Sbjct: 392 RRVGSRWRLIGYGTIE 407
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 212 bits (543), Expect = 3e-64
Identities = 119/440 (27%), Positives = 199/440 (45%), Gaps = 75/440 (17%)
Query: 45 HCNVGTIGHVDHGKTTLT---------------AAITKVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVDHGK+TL + A K+GK +DR EE
Sbjct: 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE 65
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQ---- 145
+ RG+TIN+ + + T + D PGH D++KNMI+GASQ D AI+VV+A +G+
Sbjct: 66 RERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125
Query: 146 ---MPQTREHLLLSKQIGIDNVVVYVNKADLV------DR--EIMELVELEVRDVLTAYG 194
QTREH++L+K +G+D ++V VNK DL R EI++ +V + +YG
Sbjct: 126 MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVD----QVSKFMRSYG 181
Query: 195 YDGDNTPFVFGSALLALQGDSSELGEPSIH-------RLLDALDKHIPNPVRDITSPFIL 247
++ + FV A GD+ + S + L + LD+ + P + + P +
Sbjct: 182 FNTNKVRFVPVV---APSGDN--ITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRI 235
Query: 248 PIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGD 307
PI + + G G+V +G ++ G +K D+ + + + I+ K+ +A GD
Sbjct: 236 PIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMP--AGKVGEVRSIETHHTKMDKAEPGD 293
Query: 308 NVGVLLRNVKLKQIERGMLL-AKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMF 366
N+G +R V+ K I+RG ++ + + + + A I ++ + + Y +
Sbjct: 294 NIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPT-----ALANGYTPVLH 348
Query: 367 SRTWNVQVRLDL-----------PGEDD-GMLMPGEHGTVTMTL-------LYKMYLSKG 407
T +V R+ E + L G+ V Y + G
Sbjct: 349 VHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLG 408
Query: 408 QTFTIRENNKLVATGIVTKV 427
+ F +R+ K V GI+ V
Sbjct: 409 R-FAMRDMGKTVGVGIIVDV 427
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 205 bits (525), Expect = 4e-61
Identities = 101/469 (21%), Positives = 180/469 (38%), Gaps = 100/469 (21%)
Query: 40 KSSLVHCNVGTIGHVDHGKTTLT---------------AAITKVAAKIGKSKF----ITF 80
KS+L H + +GHVD GK+TL + + + +GKS F I
Sbjct: 28 KSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWI-- 85
Query: 81 DQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVA 140
+D+ EE+ RG+T++I +ST+ ++ D PGH D++ N I G SQ D AI+ V
Sbjct: 86 --MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVD 143
Query: 141 ASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLV----DR--EIMELVELEVR 187
S QT+EH+LL+ +GI N+++ +NK D V R EI ++
Sbjct: 144 CSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKS----KLL 199
Query: 188 DVLTAYGYDGDNTPFVFGSALLALQGDS-SELGEPSIHR-------LLDALDK-----HI 234
L G+ DN +V S G+ ++ R L+ L+
Sbjct: 200 PYLVDIGFFEDNINWVPIS---GFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISK 256
Query: 235 PNPVRDITSPFILPIDNAIGVP---GRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTI 290
N + PF+ + I ++ G ++ G+I+ + L S+ +C +
Sbjct: 257 ENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGES---LTIYPSEQSCIV 313
Query: 291 SEIQVFQ--------KKVSEARAGDNVGVLLRNVKLKQIERGMLL--AKADTLQMHNRYE 340
+IQV ++ A GD V + LR + I+ G L ++ +
Sbjct: 314 DKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFV 373
Query: 341 AEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVR-------LDLPG----EDDGMLMPG 389
E+ +P+ +F R +D + L
Sbjct: 374 LELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSK 428
Query: 390 EHGTVTMTLL----------YKMYLSKGQTFTIRENNKLVATGIVTKVL 428
+ V + L+ G+ +R++ + +A G ++++
Sbjct: 429 QRAFVEIELIEVKRWIPLLTAHENDRLGR-VVLRKDGRTIAAGKISEIT 476
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 207 bits (529), Expect = 1e-60
Identities = 101/473 (21%), Positives = 181/473 (38%), Gaps = 100/473 (21%)
Query: 36 DASSKSSLVHCNVGTIGHVDHGKTTLT---------------AAITKVAAKIGKSKF--- 77
A KS+L H + +GHVD GK+TL + + + +GKS F
Sbjct: 158 SAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFA 217
Query: 78 -ITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAI 136
I +D+ EE+ RG+T++I +ST+ ++ D PGH D++ N I G SQ D AI
Sbjct: 218 WI----MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAI 273
Query: 137 VVVAASEGQM-------PQTREHLLLSKQIGIDNVVVYVNKADLV----DR--EIMELVE 183
+ V S QT+EH+LL+ +GI N+++ +NK D V R EI
Sbjct: 274 LCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKS--- 330
Query: 184 LEVRDVLTAYGYDGDNTPFVFGSALLALQGDS-SELGEPSIHR-------LLDALDK--- 232
++ L G+ DN +V S G+ ++ R L+ L+
Sbjct: 331 -KLLPYLVDIGFFEDNINWVPIS---GFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAF 386
Query: 233 --HIPNPVRDITSPFILPIDN---AIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKF 286
N + PF+ + + ++ G ++ G+I+ + L S+
Sbjct: 387 KISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGES---LTIYPSEQ 443
Query: 287 TCTISEIQVFQ--------KKVSEARAGDNVGVLLRNVKLKQIERGMLL--AKADTLQMH 336
+C + +IQV ++ A GD V + LR + I+ G L ++
Sbjct: 444 SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSA 503
Query: 337 NRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVR-------LDLPG----EDDGM 385
+ E+ +P+ +F R +D +
Sbjct: 504 QCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRH 558
Query: 386 LMPGEHGTVTMTLL----------YKMYLSKGQTFTIRENNKLVATGIVTKVL 428
L + V + L+ G+ +R++ + +A G ++++
Sbjct: 559 LGSKQRAFVEIELIEVKRWIPLLTAHENDRLGR-VVLRKDGRTIAAGKISEIT 610
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 205 bits (524), Expect = 4e-60
Identities = 112/435 (25%), Positives = 180/435 (41%), Gaps = 72/435 (16%)
Query: 45 HCNVGTIGHVDHGKTTLTAAI---------------TKVAAKIGKSKFITFDQIDRAPEE 89
++ GHVD GK+T+ I AA GK F +D EE
Sbjct: 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEE 236
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM--- 146
+ARG+T+++A + ++ + Y D PGH D+I MI+GAS D A++VV +S+
Sbjct: 237 RARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERG 296
Query: 147 ----PQTREHLLLSKQIGIDNVVVYVNKADLV----DR--EIMELVELEVRDVLT-AYGY 195
QTREH L + +GI +VV VNK DL+ DR EI V D L G+
Sbjct: 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKN----IVSDFLIKMVGF 352
Query: 196 DGDNTPFVFGSALLALQGDSSELGEPSIHR---------LLDALDKHIPNPVRDITSPFI 246
N FV S A+ G + L + LL ALD+ + P + P
Sbjct: 353 KTSNVHFVPIS---AISGTN--LIQKDSSDLYKWYKGPTLLSALDQ-LVPPEKPYRKPLR 406
Query: 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQVF-QKKVSEAR 304
L ID+ P +V G ++ G ++ N L S+ + + + A
Sbjct: 407 LSIDDVYRSPRSVTVT-GRVEAGNVQVNQV---LYDVSSQEDAYVKNVIRNSDPSSTWAV 462
Query: 305 AGDNVGVLLRNVKLKQIERGMLLAKADT-LQMHNRYEAEIYLLSKAEGGRYKPITSKYIQ 363
AGD V + L ++++ Q+ G +L+ + ++ + AEI PI S
Sbjct: 463 AGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDIH-----GPILSGSTL 517
Query: 364 QMFSRTWNVQVRLDLPGEDD---GMLMPGEHGTVTMTLL--------YKMYLSKGQTFTI 412
+ V L + ++ + + V ++ L + + G+ F +
Sbjct: 518 VLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGR-FIL 576
Query: 413 RENNKLVATGIVTKV 427
R + VA GIV ++
Sbjct: 577 RRSGDTVAAGIVKEL 591
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 198 bits (506), Expect = 1e-58
Identities = 107/443 (24%), Positives = 185/443 (41%), Gaps = 78/443 (17%)
Query: 45 HCNVGTIGHVDHGKTTLT---------------AAITKVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVD GK+TL I + A + GK + +D EE
Sbjct: 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEE 102
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM--- 146
+ +G T+ + + T R ++ D PGH Y+ NMI+GASQ D ++V++A G+
Sbjct: 103 REKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAG 162
Query: 147 ----PQTREHLLLSKQIGIDNVVVYVNKADLV------DR--EIMELVELEVRDVLT-AY 193
QTREH +L++ GI+++VV +NK D +R E ++ ++ L
Sbjct: 163 FERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVD----KLSMFLRRVA 218
Query: 194 GYDGD-NTPFVFGSALLALQGDSSELGEPSIHR-------LLDALDKHIPNPVRDITSPF 245
GY+ + ++ S A G + + S LL+ LD + + R + +PF
Sbjct: 219 GYNSKTDVKYMPVS---AYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLERKVNAPF 274
Query: 246 ILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQ-VFQKKVSEA 303
I+PI + G++ G I+ G+IK+N + T ++ I +++S +
Sbjct: 275 IMPIASKYK--DLGTILEGKIEAGSIKKNSN---VLVMPINQTLEVTAIYDEADEEISSS 329
Query: 304 RAGDNVGVLLRNVKLKQIERGMLLAKADT-LQMHNRYEAEIYLLSKAEGGRYKPITSKYI 362
GD V + +R ++ G +L + R+ A+I +L +T+ Y
Sbjct: 330 ICGDQVRLRVRGDD-SDVQTGYVLTSTKNPVHATTRFIAQIAILELP-----SILTTGYS 383
Query: 363 QQMFSRTWNVQVR-------LDLPG----EDDGMLMPGEHGTVTMTLLYKMYLSKGQT-- 409
M T +V LD + G + + + + +
Sbjct: 384 CVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 443
Query: 410 ----FTIRENNKLVATGIVTKVL 428
FT+R+ VA G V K+L
Sbjct: 444 YMGRFTLRDQGTTVAVGKVVKIL 466
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 196 bits (500), Expect = 8e-58
Identities = 126/450 (28%), Positives = 195/450 (43%), Gaps = 84/450 (18%)
Query: 45 HCNVGTIGHVDHGKTTLT---------------AAITKVAAKIGKSKFITFDQIDRAPEE 89
H NV IGHVD GK+T T K AA++GK F +D+ E
Sbjct: 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAE 66
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM--- 146
+ RGITI+IA ++ T D PGH D+IKNMI+G SQ D AI+++A G+
Sbjct: 67 RERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAG 126
Query: 147 ----PQTREHLLLSKQIGIDNVVVYVNKADLV----DR--EIMELVELEVRDVLTAYGYD 196
QTREH LL+ +G+ ++V VNK D V R EI++ E + + GY+
Sbjct: 127 ISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVK----ETSNFIKKVGYN 182
Query: 197 GDNTPFVFGSALLALQGD-----------------SSELGEPSIHRLLDALDKHIPNPVR 239
PFV S GD ++ G LL+A+D I P R
Sbjct: 183 PKTVPFVPIS---GWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSR 238
Query: 240 DITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQVFQK 298
P LP+ + + G G+V +G ++ G IK + F + T + +++ +
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMV---VTFAPAGVTTEVKSVEMHHE 295
Query: 299 KVSEARAGDNVGVLLRNVKLKQIERGMLL--AKADTLQMHNRYEAEIYLLSKAEGGRYKP 356
++ + GDNVG ++NV +K+I RG + AK D + + A + +L+
Sbjct: 296 QLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQ 350
Query: 357 ITSKYIQQMFSRTWNVQVRLDL-----------PGEDD-GMLMPGEHGTVTMTL------ 398
I++ Y + T ++ R D ED L G+ V
Sbjct: 351 ISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCV 410
Query: 399 -LYKMYLSKGQTFTIRENNKLVATGIVTKV 427
+ Y G+ F +R+ + VA G++ V
Sbjct: 411 EAFSEYPPLGR-FAVRDMRQTVAVGVIKSV 439
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 160 bits (407), Expect = 1e-44
Identities = 89/347 (25%), Positives = 147/347 (42%), Gaps = 58/347 (16%)
Query: 33 YSDDASSKSSLVHCNVGTIGHVDHGKTTL---------------TAAITKVAAKIGKSKF 77
Y K L T G+VD GK+TL AIT+ + K G
Sbjct: 15 YLGQHERKEML---RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSG---- 67
Query: 78 ITFDQIDRA------PEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQ 131
T D +D A E+ +GITI++A+ +ST R + D PGH Y +NM +GAS
Sbjct: 68 TTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGAST 127
Query: 132 MDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD--REIMELVELEVRDV 189
D AI++V A G QTR H ++ +GI ++VV +NK DL + E ++ +
Sbjct: 128 CDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKF 187
Query: 190 LTAYGYDGDNTPFVFGSALLALQGD-----SSEL----GEPSIHRLLDALDKHIPNPVRD 240
+ FV + AL+GD S G+ L++ L+ +
Sbjct: 188 AEGIAFKPTTMAFV---PMSALKGDNVVNKSERSPWYAGQS----LMEILE-TVEIASDR 239
Query: 241 ITSPFILPIDNAI--GVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQK 298
+ P+ + RG GT+ G + + DE +L S + + I F+
Sbjct: 240 NYTDLRFPVQYVNRPNLNFRG--FAGTLASGIVHKGDEIVVLP--SGKSSRVKSIVTFEG 295
Query: 299 KVSEARAGDNVGVLL-RNVKLKQIERG-MLLAKADTLQMHNRYEAEI 343
++ +A G V + + + I RG +L+ + Q+ + ++A +
Sbjct: 296 ELEQAGPGQAVTLTMEDEI---DISRGDLLVHADNVPQVSDAFDAML 339
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 92.8 bits (230), Expect = 4e-20
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITI---------- 96
N+ I HVDHGK+TLT ++ + A I +K D +E+ RGITI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 97 ----NIAHVEYSTNTRHYAHT--DCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTR 150
++ ++ T+ + D PGH D+ + + DGA+VVV EG QT
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
Query: 151 EHLLLSKQIGIDNV--VVYVNKADLVDREIMELVELEVRD 188
L +Q + + VV +NK VDR ++EL ++ D
Sbjct: 141 TVL---RQALGERIKPVVVINK---VDRALLEL-QVSKED 173
Score = 29.2 bits (65), Expect = 3.9
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 37/128 (28%)
Query: 221 PSIHRLLDALDKHIPNPVR-------------------------DITSPFILPIDNAIGV 255
P+ LL+ + H+P+PV D + +L + +
Sbjct: 329 PAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPT 388
Query: 256 PGRGS-VCIGTIKQGTIKRNDEAELLGFNSK-------FTCTISEIQVF----QKKVSEA 303
+G G + GT+K + + G N F I + + + + +
Sbjct: 389 SDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDC 448
Query: 304 RAGDNVGV 311
AG+ +G+
Sbjct: 449 PAGNIIGL 456
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 81.2 bits (201), Expect = 3e-18
Identities = 59/168 (35%), Positives = 79/168 (47%), Gaps = 31/168 (18%)
Query: 48 VGTI-GHVDHGKTTLTAAI--TKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
V TI GHVDHGKTTL AI +KV + +A GIT +I + +
Sbjct: 10 VVTIMGHVDHGKTTLLDAIRHSKVTEQ------------------EAGGITQHIGAYQVT 51
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
N + D PGH + GA D I+VVAA +G MPQT E + +K + +
Sbjct: 52 VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-I 110
Query: 165 VVYVNKADL----VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL 208
+V +NK D DR + EL+E + V +G GD T F SA
Sbjct: 111 IVAINKMDKPEANPDRVMQELMEYNL--VPEEWG--GD-TIFCKLSAK 153
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 76.0 bits (188), Expect = 5e-15
Identities = 79/255 (30%), Positives = 103/255 (40%), Gaps = 79/255 (30%)
Query: 48 VGTI-GHVDHGKTTLTAAI--TKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVE 102
V TI GHVDHGKT+L I TKVA+ +A GIT +I HVE
Sbjct: 6 VVTIMGHVDHGKTSLLEYIRSTKVASG------------------EAGGITQHIGAYHVE 47
Query: 103 YSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGID 162
T D PGHA + GA D ++VVAA +G MPQT E + +K +
Sbjct: 48 --TENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP 105
Query: 163 NVVVYVNKADL----VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSA--------LL- 209
VVV VNK D DR EL + + + +G G+ + FV SA LL
Sbjct: 106 -VVVAVNKIDKPEADPDRVKNELSQYGI--LPEEWG--GE-SQFVHVSAKAGTGIDELLD 159
Query: 210 --ALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV-------PGRGS 260
LQ +E+ E L A A G GRG
Sbjct: 160 AILLQ---AEVLE------LKA------VRKG-----------MASGAVIESFLDKGRGP 193
Query: 261 VCIGTIKQGTIKRND 275
V +++GT+ + D
Sbjct: 194 VATVLVREGTLHKGD 208
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 76.1 bits (188), Expect = 5e-15
Identities = 71/254 (27%), Positives = 97/254 (38%), Gaps = 80/254 (31%)
Query: 50 TI-GHVDHGKTTLTAAI--TKVAAKIGKSKFITFDQIDRAPEEKARGITINIA--HVEYS 104
TI GHVDHGKTTL + T+VAA E A GIT +I V
Sbjct: 8 TIMGHVDHGKTTLLDKLRKTQVAAM-----------------E-AGGITQHIGAFLVSLP 49
Query: 105 TNTRHYAHTDCPGHADYIKNMIS-GASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
+ D PGHA + M + G D I+VVAA +G M QT E + +K +
Sbjct: 50 -SGEKITFLDTPGHAAFSA-MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP- 106
Query: 164 VVVYVNKADL----VDREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL----------- 208
+V+ +NK D ++ EL+ +V V YG GD V SAL
Sbjct: 107 IVLAINKCDKAEADPEKVKKELLAYDV--VCEDYG--GD-VQAVHVSALTGENMMALAEA 161
Query: 209 LALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGV-------PGRGSV 261
+E+ E L A +P G GRG V
Sbjct: 162 TIAL---AEMLE------LKA------DPTG-----------AVEGTVIESFTDKGRGPV 195
Query: 262 CIGTIKQGTIKRND 275
I++GT+++
Sbjct: 196 TTAIIQRGTLRKGS 209
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 69.2 bits (170), Expect = 9e-13
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 37/140 (26%)
Query: 52 GHVDHGKTTLTAAI--TKVAAK--------IG--------KSKFITFDQIDRAPEEKARG 93
GHVDHGKTTL I + VA++ IG + E G
Sbjct: 12 GHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPG 71
Query: 94 ITINIAHVEYSTNTRHYAHTDCPGHADYIKNMIS-GASQMDGAIVVVAASEGQMPQTREH 152
+ D PGH + + G + D AI++V +EG PQT+E
Sbjct: 72 LFF----------------IDTPGHEAF-TTLRKRGGALADLAILIVDINEGFKPQTQEA 114
Query: 153 LLLSKQIGIDNVVVYVNKAD 172
L + + VV NK D
Sbjct: 115 LNILRMYRTP-FVVAANKID 133
Score = 35.3 bits (82), Expect = 0.040
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 264 GTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL-KQIE 322
G I+QG ND+ E +G T+ +Q + + A G V + +++ K I
Sbjct: 489 GVIRQGYPLMNDDGETVG-------TVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIH 541
Query: 323 RG 324
G
Sbjct: 542 EG 543
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 61.7 bits (150), Expect = 4e-12
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAG 306
+ ++ + + G+ + IGT++ G I + + I I+ ++KV A AG
Sbjct: 37 VVVEEVVNIMGKDVI-IGTVESGMIGVGFKVK----GPSGIGGIVRIERNREKVEFAIAG 91
Query: 307 DNVGVLLRNVKLKQIERGMLLA 328
D +G+ + K+ ++++G +L
Sbjct: 92 DRIGISIEG-KIGKVKKGDVLE 112
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 66.8 bits (164), Expect = 6e-12
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGKSKFITFD---QIDRAPEEKARGITINIAH 100
V +GH GKTTLT A+ T + G+ + D PE K T+
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGR----VEEGTTTTDYTPEAKLHRTTVRTG- 65
Query: 101 VEYSTNTRHYAHT----DCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQT 149
H D PG+ D++ + D A+V V+A G T
Sbjct: 66 ---VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT 115
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 65.9 bits (162), Expect = 9e-12
Identities = 70/295 (23%), Positives = 122/295 (41%), Gaps = 69/295 (23%)
Query: 51 IGHVDHGKTTL-------TAAITKVAAKIGKSKFITFDQI-DRAPEEKARGITINIAHVE 102
I HVDHGK+TL T AI++ + +Q+ D E+ RGIT+
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISEREKR---------EQLLDTLDVERERGITVK-MQ-- 59
Query: 103 YSTNTRHYAHTDCPGHADYIKNMI--------------SGASQMDGAIVVVAASEGQMPQ 148
Y D G+ Y ++I + A+ +GA++++ AS+G Q
Sbjct: 60 --AVRMFYKAKD--GN-TYKLHLIDTPGHVDFSYEVSRALAA-CEGALLLIDASQGIEAQ 113
Query: 149 TREHLLLSKQIGIDN---VVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205
T + + ++ ++ +NK DL ++ + V+ ++ +VL G D +
Sbjct: 114 TVANFWKA----VEQDLVIIPVINKIDLPSADV-DRVKKQIEEVL---GLDPEEAILA-- 163
Query: 206 SALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGT 265
S++ G I +L+A+ IP P D P I ++ P RG+V
Sbjct: 164 ---------SAKEGI-GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVR 213
Query: 266 IKQGTIKRNDEAELLGFNSKFTCTISEIQVF---QKKVSEARAGDNVGVLLRNVK 317
I G +K D+ L+ ++ T E+ K + AGD VG + ++K
Sbjct: 214 IFDGEVKPGDKIMLMSTGKEYEVT--EVGAQTPKMTKFDKLSAGD-VGYIAASIK 265
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 65.9 bits (162), Expect = 1e-11
Identities = 71/295 (24%), Positives = 118/295 (40%), Gaps = 69/295 (23%)
Query: 51 IGHVDHGKTTL-------TAAITKVAAKIGKSKFITFDQI-DRAPEEKARGITINIAHVE 102
I H+DHGK+TL ++ + Q+ D E+ RGITI V
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDREME---------AQVLDSMDLERERGITIKAQSV- 59
Query: 103 YSTNTRHYAHTDCPGHADYIKNMI--------------SGASQMDGAIVVVAASEGQMPQ 148
T Y +D G Y N I S A+ +GA++VV A +G Q
Sbjct: 60 ----TLDYKASD--GE-TYQLNFIDTPGHVDFSYEVSRSLAA-CEGALLVVDAGQGVEAQ 111
Query: 149 TREHLLLSKQIGIDN---VVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFG 205
T + + ++ VV +NK DL + E V E+ D++ G D +
Sbjct: 112 TLANCYTA----MEMDLEVVPVLNKIDLPAADP-ERVAEEIEDIV---GIDATDAVRC-- 161
Query: 206 SALLALQGDSSELGEPSIHRLLDALDKHIPNPVRDITSPFILPIDNAIGVPGRGSVCIGT 265
S++ G + +L+ L + IP P D P I ++ G V +
Sbjct: 162 ---------SAKTGV-GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIR 211
Query: 266 IKQGTIKRNDEAELLGFNSKFTCTISEIQVF---QKKVSEARAGDNVGVLLRNVK 317
IK GT+++ D+ +++ + + +F Q +E + G+ VG L+ +K
Sbjct: 212 IKNGTLRKGDKVKVMSTGQTYNAD--RLGIFTPKQVDRTELKCGE-VGWLVCAIK 263
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 5e-09
Identities = 65/393 (16%), Positives = 109/393 (27%), Gaps = 148/393 (37%)
Query: 2 LIKYSFQHFNTLLRCKNFKLNSYFK----LLKYNCYSDDASSKS---------------S 42
LIK+S + + L+R F +L++ + K
Sbjct: 187 LIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 43 LVH----CNV-----GTIGHVDHGKTTLTAAITKVAAKIGKSK----FITFDQIDRAPEE 89
L H + G + G T + + A I ++ F F + +A
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESF--FVSVRKA--- 299
Query: 90 KARGITINI-----AHVEYSTNTRHYAHTDCP--GHADYIKNMISGASQMDGAIVVVAAS 142
IT+ + Y +T P D ++N S M + + +
Sbjct: 300 ----ITVLFFIGVRCY-------EAYPNTSLPPSILEDSLENNEGVPSPM---LSISNLT 345
Query: 143 EGQ----MPQTREHLLLSKQIGI------DNVVVYVNKADLVDREIMELVELEVRDVLTA 192
+ Q + +T HL KQ+ I N+VV L + L +R
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL------YGLNLTLRKAKAP 399
Query: 193 YGYDGDNTPF-----VFG-----------SALLA--------------LQGDSSELGEPS 222
G D PF F S LL + ++ ++ P
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 223 IH-------RLLDALDKHIPNPVRDITSPFILPID--------------------NAIG- 254
R+L V I LP+ + +G
Sbjct: 460 YDTFDGSDLRVLSGSI--SERIVDCIIR---LPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 255 -----VPGRGSVCIGTIKQGTIKRNDEAELLGF 282
G G + I GT+ N + + GF
Sbjct: 515 LTHRNKDGTG---VRVIVAGTLDINPDDD-YGF 543
Score = 43.1 bits (101), Expect = 2e-04
Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 100/242 (41%)
Query: 166 VYVNKADLVDREIMELVELEVRDVLTAYGYDGD--------NT-P--FVFGSALLAL--- 211
++ D + E + E+ + T+Y + + T P + A
Sbjct: 1692 IFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 212 ----QGDS-----SELGEPSIHRLLDAL----DKHIPNPVRDITSPFILPIDNAI----- 253
D+ S LGE + AL D ++ I++ +
Sbjct: 1750 KGLIPADATFAGHS-LGEYA------ALASLAD--------------VMSIESLVEVVFY 1788
Query: 254 -G------VP----GRGSVCIGTIKQGTIKR--NDEA-----ELLGFNSKFTCTISEI-- 293
G VP GR + + I G + + EA E +G + + EI
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV---EIVN 1845
Query: 294 ------QVFQKKVSEARAGDNVGV-----LLRNVKLKQIERGMLLAKADTLQMHNRYEAE 342
Q V+ AGD + +L +KL++I+ ++ +L + E
Sbjct: 1846 YNVENQQY----VA---AGDLRALDTVTNVLNFIKLQKID---IIELQKSLSL-EEVEGH 1894
Query: 343 IY 344
++
Sbjct: 1895 LF 1896
Score = 39.6 bits (92), Expect = 0.003
Identities = 61/438 (13%), Positives = 121/438 (27%), Gaps = 152/438 (34%)
Query: 22 NSYFKLLK--YNCYSD------DASSK--SSLVHCNVGTIGHVDHGKTTLTAAITKVAAK 71
+ YF+ L+ Y Y S++ S L+ + G
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-------------- 212
Query: 72 IGKSKFITFDQI------DRAPEEKARGITINIAHVEYS------TNTRHYAHTDC---- 115
+ + P++ + + S HY T
Sbjct: 213 --------LNILEWLENPSNTPDKDY------LLSIPISCPLIGVIQLAHYVVT-AKLLG 257
Query: 116 --PGHADYIKNMISGASQMDGAIVV---VAAS---EGQMPQTREHLLLSKQIGIDNVVVY 167
PG +++ + GA+ +V +A + E R+ + + IG+ Y
Sbjct: 258 FTPGE---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 168 VNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLL 227
N + L + + +E + + P S +L++ L + + +
Sbjct: 315 PNTS-LPPSILEDSLE------------NNEGVP----SPMLSISN----LTQEQVQDYV 353
Query: 228 DALDKHIPNPVRDITSPFILPIDNAIGVP---GRGS-VCIGTIKQGTIKRNDEAELLGFN 283
+ + H LP + + G + V G + L G N
Sbjct: 354 NKTNSH-------------LPAGKQVEISLVNGAKNLVVSGPPQ----------SLYGLN 390
Query: 284 SKF-------TCTISEIQVFQKKVSEARAGDNVGV-----LLRNVK---LKQIERGMLLA 328
S I ++K+ + V LL K + + +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 329 KADTLQMHNRYEAEIYLLSKAEGGRY--KPITSKYIQQMFSRT--WNVQVR------LDL 378
A +Q+ +Y R I+ + + + W + LD
Sbjct: 451 NAKDIQIP------VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 379 -PGEDDGMLMPGEHGTVT 395
PG G+ G +T
Sbjct: 505 GPGGASGL------GVLT 516
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 53.2 bits (128), Expect = 1e-07
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 24/154 (15%)
Query: 51 IGHVDHGKTTLT-------AAITK---VAAKIGKSKFITFD--QIDRAPEEKARGITINI 98
I H D GKTTLT AI + ++ ++ T D ++ EK RGI++
Sbjct: 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSR-KAARHATSDWMEL-----EKQRGISVTT 72
Query: 99 AHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ 158
+ +++ D PGHAD+ ++ + +D A++V+ A++G P+T + + + +
Sbjct: 73 SVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL 132
Query: 159 IGIDNVVVYVNKADLVDREIMELVEL--EVRDVL 190
++ ++NK +DR+ +EL E+ +L
Sbjct: 133 RHTP-IMTFINK---MDRDTRPSIELLDEIESIL 162
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 50.6 bits (122), Expect = 1e-07
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQVFQKKVSE 302
P LPI + G+V +G ++ G+I + + L +K + I +
Sbjct: 6 PIRLPIVDKYK--DMGTVVLGKLESGSICKGQQ---LVMMPNKHNVEVLGILSDDVETDT 60
Query: 303 ARAGDNVGVLLRNVKLKQIERGMLL 327
G+N+ + L+ ++ ++I G +L
Sbjct: 61 VAPGENLKIRLKGIEEEEILPGFIL 85
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 52.8 bits (127), Expect = 2e-07
Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 24/154 (15%)
Query: 51 IGHVDHGKTTLT-------AAITK---VAAKIGKSKFITFD--QIDRAPEEKARGITINI 98
I H D GKTT+T AI V + G ++ D ++ EK RGI+I
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGR-GSNQHAKSDWMEM-----EKQRGISITT 72
Query: 99 AHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQ 158
+ +++ + D PGH D+ ++ + +D ++V+ A++G +TR+ + +++
Sbjct: 73 SVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL 132
Query: 159 IGIDNVVVYVNKADLVDREIMELVEL--EVRDVL 190
++ ++NK +DR+I + +EL EV + L
Sbjct: 133 RDTP-ILTFMNK---LDRDIRDPMELLDEVENEL 162
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 43.6 bits (104), Expect = 1e-04
Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 36/122 (29%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGKSKFITFD---QIDRAPEEKARGITINIAH 100
N+G H+D GKTT T I T KIG+ + +D +E+ RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQERERGITITAA- 68
Query: 101 VEYSTNTRHYAHT----DCPGHADY---------IKNMISGASQMDGAIVVVAASEGQMP 147
T H D PGH D+ + +DGAIVV +S+G P
Sbjct: 69 ---VTTCFWKDHRINIIDTPGHVDFTIEVERSMRV---------LDGAIVVFDSSQGVEP 116
Query: 148 QT 149
Q+
Sbjct: 117 QS 118
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 43.6 bits (104), Expect = 1e-04
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 36/122 (29%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGKSKFITFD---QIDRAPEEKARGITINIAH 100
N+G + H+D GKTT T I T KIG+ T + Q+D +E+ RGITI A
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGE----THEGASQMDWMEQEQDRGITITSA- 66
Query: 101 VEYSTNTRHYAHT----DCPGHADY---------IKNMISGASQMDGAIVVVAASEGQMP 147
+T H D PGH D+ + +DGA+ V+ A G P
Sbjct: 67 ---ATTAAWEGHRVNIIDTPGHVDFTVEVERSLRV---------LDGAVTVLDAQSGVEP 114
Query: 148 QT 149
QT
Sbjct: 115 QT 116
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 42.5 bits (101), Expect = 3e-04
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 35/125 (28%)
Query: 47 NVGTIGHVDHGKTTLTAAI---TKVAAKIGKSKFITFD---QIDRAPEEKARGITINIAH 100
N+G H+D GKTT T I T V KIG+ D +D +E+ RGITI A
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAA 67
Query: 101 VE---YSTNTRHYAHT----DCPGHADY---------IKNMISGASQMDGAIVVVAASEG 144
++ H D PGH D+ + +DGA++V A G
Sbjct: 68 TTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRV---------LDGAVMVYCAVGG 118
Query: 145 QMPQT 149
PQ+
Sbjct: 119 VQPQS 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 42.1 bits (99), Expect = 3e-04
Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 38/175 (21%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
V GH + GK+TL A+T +I F T IN+ E
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTT--------------RGINVGQFED--G 212
Query: 107 TRHYAHTDCPG---HADYIKNMISGAS-----QMDGAIVVV---AASEGQMPQTREHLL- 154
Y D PG +N I + + I+ + + G + + HL
Sbjct: 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFE 272
Query: 155 -LSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL 208
+ + +V +NK D+ D E ++ + + G + SAL
Sbjct: 273 EVHGEFKDLPFLVVINKIDVADEENIK----RLEKFVKEKGL-----NPIKISAL 318
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 37.5 bits (88), Expect = 0.006
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 129 ASQMDGAIVVVAASEGQMPQTREHLL-----LSKQIGIDNVVVYVNKADLVDREIMELVE 183
+ +D I+V P+ +LL + + ++ V+ NK DL++ E + +E
Sbjct: 77 VANVDRVIIVETLKM---PEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEEKKELE 132
Query: 184 LEVRDVLTAYGYD 196
+ GYD
Sbjct: 133 -RWISIYRDAGYD 144
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 37.7 bits (86), Expect = 0.009
Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 23/137 (16%)
Query: 118 HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD-- 175
+ ++ + V+ AS+ R +L + V VN D V
Sbjct: 190 RNELSLGYVNNC---HAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246
Query: 176 --------------REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLAL----QGDSSE 217
+ ++ + + T G + + S++ AL + ++
Sbjct: 247 LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD 306
Query: 218 LGEPSIHRLLDALDKHI 234
L + +D+L+ +
Sbjct: 307 LDGTGFPKFMDSLNTFL 323
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.009
Identities = 58/471 (12%), Positives = 132/471 (28%), Gaps = 128/471 (27%)
Query: 43 LVHCNVGTIGHVDHGKTTLTAAI---TKVAAKIGKSKF-ITFDQIDRAPE--EKARGITI 96
L+ G +G GKT + + KV K+ F + + E + +
Sbjct: 154 LID---GVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 97 NIAHVEYSTNTRHYAHTDCPGHA--DYIKNMISGASQMDGAIV--------VVAASEGQM 146
I +++ + H ++ H+ ++ ++ + +V A
Sbjct: 208 QIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 147 PQTREHLLLSKQIGI-DNVVVYVNKADLVDREIMELVELEVRDVLTAY-GYDGDN----- 199
+ LL ++ + D + +D M L EV+ +L Y +
Sbjct: 267 -KI---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 200 ---TPFVFG--SALLA---------LQGDSSELGEPSIHRLLDALDKHIPNPVRDI-TSP 244
P + + + +L I L+ L+ P R +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLE---PAEYRKMFDRL 378
Query: 245 FILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEAR 304
+ P I + L+ F+ + + + K +
Sbjct: 379 SVFPPS----AH---------IPTILL------SLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 305 AGDNVGVLLRNVKLKQIERGMLLAKADTL-QMHNRYEAEIYLLSKA--EGGRYKPITSKY 361
+ + ++ L+ L K + +H + Y + K P +Y
Sbjct: 420 QPKESTISIPSIYLE------LKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY 472
Query: 362 IQQ----------------MFSRT-----WNVQVRLDLPGEDDGMLMPGEHGTVTMTLL- 399
+F + ++ ++ G++ TL
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDS-----TAWNASGSILNTLQQ 526
Query: 400 ---YKMYLSKGQTFTIRENNKLVATGIVTKVLGNME--IPQHNLGMIRTKE 445
YK Y I +N+ +++ + +P+ +I +K
Sbjct: 527 LKFYKPY--------ICDND-----PKYERLVNAILDFLPKIEENLICSKY 564
Score = 36.4 bits (83), Expect = 0.026
Identities = 55/354 (15%), Positives = 110/354 (31%), Gaps = 110/354 (31%)
Query: 100 HVEYSTNTRHYAHT--------------DCPGHADYIKNMISGASQMDGAIVVVAASEGQ 145
H+++ T Y + DC D K+++S ++D I+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EID-HII-------M 56
Query: 146 MPQTREH------LLLSKQIGIDNVV-VYVNKADLVDRE-IMELVELEVRD---VLTAYG 194
LLSKQ + +V +V + ++ + +M ++ E R + Y
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 195 YDGDNTPFVFGSALLALQGDSSELGEPSIHR--LLDALDKHIPN--PVRDITSPFILPID 250
D L D+ + ++ R L + + P +++ ID
Sbjct: 114 EQRDR-----------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL------ID 156
Query: 251 NAIGVPGRG------SVC------------IGTIKQGTIKRNDE--AELLGFNSKFTC-- 288
GV G G VC I + + L +
Sbjct: 157 ---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 289 ------------TISEIQVFQKKVSEARAGDNVGVLLRNVKLKQIERG------MLLA-- 328
I IQ +++ +++ +N ++L NV+ + +LL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 329 -KADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGE 381
K T + I L + +T ++ + + + + + DLP E
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSLLLKYLDCRPQ-DLPRE 321
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 35.7 bits (82), Expect = 0.014
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 94 ITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGA---SQMDGAIVVV-AASEGQMPQT 149
I + S+ ++ D PG D+ I V+ A + T
Sbjct: 56 NKIYKDDISNSSFV-NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALT 114
Query: 150 REHLLLSKQIGID---NVVVYVNKADLVD----REIMELVELEVRDVLTAYGYDGDNTPF 202
R H+ +SK ++ N V+++K D + E + D L G + + F
Sbjct: 115 RLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 35.7 bits (82), Expect = 0.024
Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 94 ITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQM-----DGAIVVVAASEGQMPQ 148
I + +H+ + N DC G +++N + I V ++ +
Sbjct: 39 IDVEHSHLRFLGNM-TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK 97
Query: 149 TREHL--------LLSKQIGIDNVVVYVNKADLVD----REIMELVELEVRDVLTAYGYD 196
E S + V ++K DLV E+ +++ + + + +G+
Sbjct: 98 DIEIFAKALKQLRKYSPDA---KIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 35.1 bits (81), Expect = 0.026
Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 41/192 (21%)
Query: 57 GKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAH---T 113
GKTT I + K + ++ E R + + ++
Sbjct: 26 GKTTNLKWIYSKVPEGRKGEMVSL------ATEDERTLFFDFLPLDIGEVKGFKTRFHLY 79
Query: 114 DCPGHA---DYIKNMISGASQMDGAIVVVAASEGQMPQTRE------HLLLSKQIGIDNV 164
PG K ++ G DG + V ++ ++ E L + +D+V
Sbjct: 80 TVPGQVFYNASRKLILRGV---DGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDV 136
Query: 165 --VVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPS 222
V+ VNK DL D L VR V+ D + V + A +G
Sbjct: 137 PIVIQVNKRDLPDA----LPVEMVRAVV-----DPEGKFPVLEAV--ATEGKGVFET--- 182
Query: 223 IHRLLDALDKHI 234
L + + +
Sbjct: 183 ----LKEVSRLV 190
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 35.6 bits (83), Expect = 0.026
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 129 ASQMDGAIVVVAASEGQMPQTREHLL-----LSKQIGIDNVVVYVNKADLVDREIMELVE 183
+D A++V +A + P LL L + I ++ + K DL++ + E
Sbjct: 84 ICNVDQAVLVFSAVQ---PSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDTI 139
Query: 184 LEVRDVLTAYGYD 196
+ GYD
Sbjct: 140 QAYAEDYRNIGYD 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 35.2 bits (82), Expect = 0.032
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 129 ASQMDGAIVVVAASEGQMPQTREHLL-----LSKQIGIDNVVVYVNKADLVDREIMELVE 183
+ +D I+VV P+T +++ L+++ ++ V+ +NK DL D + +
Sbjct: 82 VANVDQVILVVTVKM---PETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDDLR--- 134
Query: 184 LEVRDVLTAY--GYD 196
+VR++ Y Y
Sbjct: 135 -KVRELEEIYSGLYP 148
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 34.9 bits (81), Expect = 0.046
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 126 ISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELE 185
+ +DG I +V A Q + + Q+G + ++ + K D+ E +L
Sbjct: 117 LCQRYLLDGVIALVDAVHA-DEQMNQFTIAQSQVGYADRIL-LTKTDVAG----EAEKLH 170
Query: 186 VR 187
R
Sbjct: 171 ER 172
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 34.0 bits (78), Expect = 0.078
Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 31/174 (17%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
+ G + GK++ +++ + F T + + H ++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT--------------KNLYVGHFDH--KL 75
Query: 108 RHYAHTDCPG---HADYIKNMISGASQ-----MDGAIVVV---AASEGQMPQTREHLL-- 154
Y D PG A +N I + ++G I+ + + G + + +L
Sbjct: 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYS 135
Query: 155 LSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL 208
+ ++V+ NK D + + + + + + + F S L
Sbjct: 136 IKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI--KFSSFSTL 187
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 34.2 bits (79), Expect = 0.078
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 129 ASQMDGAIVVVAASEGQMPQTREHLL-----LSKQIGIDNVVVYVNKADLVDREIMELVE 183
A+ +D ++V A P+ +++ + + ++ ++ +NK DL+D E M+ V
Sbjct: 128 AANIDQIVIVSAIL----PELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEGMDFVN 182
Query: 184 LEVRDVLTAYGYD 196
E D+ GY
Sbjct: 183 -EQMDIYRNIGYR 194
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 32.1 bits (74), Expect = 0.44
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 164 VVVYVNKADLV--DREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL 208
VV+ VNK D V D M+ E +RD Y P +F SAL
Sbjct: 289 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSAL 331
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 31.6 bits (71), Expect = 0.54
Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 13/142 (9%)
Query: 73 GKSKFITFDQIDRAPEEKAR-GITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQ 131
GKS + P + T N + +ST A + PG +Y +
Sbjct: 11 GKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLI-DLAVMELPGQLNYFEPSYDSERL 69
Query: 132 MDGAIVVV----AASEGQMPQTREHLLLSKQIGID---NVVVYVNKADLVDR----EIME 180
+V + E T +++ ++ N+ V ++K D + +
Sbjct: 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQR 129
Query: 181 LVELEVRDVLTAYGYDGDNTPF 202
+ + L G DG F
Sbjct: 130 DIMQRTGEELLELGLDGVQVSF 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.5 bits (72), Expect = 0.64
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 22/103 (21%)
Query: 133 DGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTA 192
D I+V ++ +L +I VV VNK D++ E + L
Sbjct: 115 DCGILVTDSAPTPYEDDVVNLFKEMEI---PFVVVVNKIDVLG---------EKAEELKG 162
Query: 193 YGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIP 235
+ S ALQ + + + +P
Sbjct: 163 LYESRYEAKVLLVS---ALQKK-------GFDDIGKTISEILP 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.66
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 9/28 (32%)
Query: 20 KLNSYFKLLKYNCYSDDASS----KSSL 43
KL + KL Y+DD++ K+++
Sbjct: 24 KLQASLKL-----YADDSAPALAIKATM 46
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 31.3 bits (70), Expect = 0.83
Identities = 49/380 (12%), Positives = 103/380 (27%), Gaps = 37/380 (9%)
Query: 77 FITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISG-------- 128
F+ + P + I+I D PG K +S
Sbjct: 139 FLNRFMCAQLPNQVLESISI----------------IDTPGILSGAKQRVSRGYDFPAVL 182
Query: 129 ---ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELE 185
A ++D I++ A + ++ + + + D + V +NKAD+V+ + + V
Sbjct: 183 RWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGA 242
Query: 186 VRDVLTAYGYDGDNTPFVFGSALLA--LQGDSSELGEPSIHRLLDALDKHIPNPVRDITS 243
+ L + GS L D+ L E L + + +
Sbjct: 243 LMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLN 302
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLG-FNSKFTCTISEIQVFQKKVSE 302
+ S + K N + +L+ F E + +
Sbjct: 303 DLVKRARLVRVHAYIISYLKKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPD 362
Query: 303 ARAGDNVGVLLRNVKLKQIERGMLLAKADTLQMHNRYEAEIYLLSKAEGGRYKPITSKYI 362
+ + + K ++ +L A D L + + E +
Sbjct: 363 CQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKLMPLLRQEELESVEAGVAGGAFE 422
Query: 363 QQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVTMTLLYKMYLSKGQTF-TIRENNKLVAT 421
+ ++G E Y + F + + ++
Sbjct: 423 GTRMGPFVERGPDEAIEDGEEGSEDDAEWVVTKDKSKYD------EIFYNLAPADGKLSG 476
Query: 422 GIVTKVLGNMEIPQHNLGMI 441
+ ++P LG I
Sbjct: 477 SKAKTWMVGTKLPNSVLGRI 496
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 30.9 bits (71), Expect = 0.85
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 164 VVVYVNKADLV--DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEP 221
VV NK DLV + + R+ L Y +P +F SA
Sbjct: 295 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY----SPLIFTSADKG-WN-------- 341
Query: 222 SIHRLLDALDK 232
I R++DA++
Sbjct: 342 -IDRMIDAMNL 351
>3ep1_A PGRP-HD - peptidoglycan recognition protein homologue; immune
system, thermophIle, model system; 2.10A {Alvinella
pompejana}
Length = 176
Score = 29.1 bits (65), Expect = 1.9
Identities = 4/14 (28%), Positives = 4/14 (28%)
Query: 108 RHYAHTDCPGHADY 121
R G A Y
Sbjct: 150 RLRTTPAMSGQAFY 163
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 29.5 bits (66), Expect = 2.9
Identities = 10/102 (9%), Positives = 29/102 (28%), Gaps = 28/102 (27%)
Query: 292 EIQVFQKKVSEARAGDNVGVLLRNVK----LKQIERGMLLAKADTLQMHNRYEAEIYLLS 347
+ + + +++ L+ + L ++E+ +A+ + E E++L
Sbjct: 431 KNVQLVHNAEKGQYDNDLAALVATGREMFRLGKLEQ---IAREKVRTLALVDEIEVWL-- 485
Query: 348 KAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPG 389
+ ++ L L M
Sbjct: 486 ------------------AYQN-KLKKSLGLTSVTSEMRFFD 508
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 28.8 bits (65), Expect = 4.2
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 20/98 (20%)
Query: 143 EGQMPQTREHLLLSKQIGIDNV---VVYVNKADLVDREIMELVELEVRDVLTAYGYDGDN 199
+ + E L ++IG+ V NK D ++ ++ + ++L + Y D
Sbjct: 275 IETLQSSFEIL---REIGVSGKPILVTL-NKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330
Query: 200 TPFVFGSALLALQGDSSELGEPSIHRLLDALDKHIPNP 237
+ SAL + L D + +
Sbjct: 331 ---IPISAL-------KRTN---LELLRDKIYQLATQL 355
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131,
NYSGXRC, structural genomics, protein structure
initiative; 2.04A {Pseudomonas syringae PV}
Length = 398
Score = 28.3 bits (63), Expect = 5.6
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 129 ASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRD 188
A+ D V+VA + P +Q+G+D+ Y + + ++E ++
Sbjct: 33 AALRDNTFVLVAGAFDIDPIRGSAF--GEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90
Query: 189 VLT 191
+ T
Sbjct: 91 IAT 93
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.7 bits (61), Expect = 6.1
Identities = 16/124 (12%), Positives = 29/124 (23%), Gaps = 25/124 (20%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITIN-IAHVEYSTN 106
+G+ GKTTL G + + H +
Sbjct: 7 WQVVGYKHSGKTTLMEKW--------------------VAAAVREGWRVGTVKHHGHGGE 46
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVV 166
D H + + + + + L L + +D V+V
Sbjct: 47 PARPEGVDSVRHERAGAVATAVEGDGLLQLH----LRRPLWRLDDVLALYAPLRLDLVLV 102
Query: 167 YVNK 170
K
Sbjct: 103 EGYK 106
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.1 bits (62), Expect = 6.6
Identities = 25/181 (13%), Positives = 44/181 (24%), Gaps = 43/181 (23%)
Query: 50 TIGHVDHGKTTLTAAITKVAAKIGKSKFITFD------------------QIDRAPEEKA 91
+G GKTTLT + K ++ D ++ E
Sbjct: 19 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 78
Query: 92 RGITINIAHVEY--------------STNTRHYAHTDCPGHADYIKNMISGASQMDG--- 134
+ + Y D PG + G M+
Sbjct: 79 GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY 138
Query: 135 --AIVVVAASEGQMPQTREHLLLSK-----QIGIDNVVVYVNKADLVDREIMELVELEVR 187
+ + + P + ++G + +NK DL+ E E
Sbjct: 139 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEKERHRKYFE 197
Query: 188 D 188
D
Sbjct: 198 D 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 28.0 bits (62), Expect = 7.0
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 120 DYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDREIM 179
D+++ + + +V + L + +G + V++ NKADL+ + +
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPG---LHRFVGNNKVLLVGNKADLIPKSVK 114
Query: 180 E 180
Sbjct: 115 H 115
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 27.6 bits (62), Expect = 8.0
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 134 GAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVDR 176
G +V E + L K IG +V+ D
Sbjct: 189 GFRPIVTVR------RDEQIALLKDIGAAHVLNE-KAPDFEAT 224
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 27.4 bits (61), Expect = 9.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 57 GKTTLTAAITKVAAKIGKS 75
GKTT+ A + K+ A
Sbjct: 12 GKTTVAAGLIKIMASDYDK 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,017,497
Number of extensions: 436254
Number of successful extensions: 1232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 70
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)