RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3124
(463 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 231 bits (589), Expect = 1e-74
Identities = 117/201 (58%), Positives = 149/201 (74%), Gaps = 10/201 (4%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKI-GKSKFITFDQIDRAPEEKARGITINIAHVEY 103
H NVGTIGHVDHGKTTLTAA+T VAA + + ID+APEE+ARGITIN AHVEY
Sbjct: 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 62
Query: 104 STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
T RHY+H DCPGHADYIKNMI+GA+QMDGAI+VV+A++G MPQTREH+LL++Q+G+
Sbjct: 63 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPY 122
Query: 164 VVVYVNKADLVDR-EIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQ--------GD 214
+VV++NK D+VD E+++LVE+EVRD+L Y + GD P + GSALLAL+
Sbjct: 123 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRR 182
Query: 215 SSELGEPSIHRLLDALDKHIP 235
I LLDA+D++IP
Sbjct: 183 GENEWVDKIWELLDAIDEYIP 203
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 226 bits (578), Expect = 4e-73
Identities = 130/194 (67%), Positives = 162/194 (83%), Gaps = 1/194 (0%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
H NVGTIGHVDHGKTTLTAAITK+ A+ G +KF +++ID APEE+ARGITIN AHVEYS
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS 62
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
T RHYAHTDCPGHADY+KNMI+G + +DG I+VVAA++G MPQTREHLLL++QIG+++V
Sbjct: 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHV 122
Query: 165 VVYVNKADLV-DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSI 223
VVYVNKAD V D E++ELVELE+R++LT +GY G+ TP + GSAL AL+ ELG S+
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSV 182
Query: 224 HRLLDALDKHIPNP 237
+LLDA+D +IP P
Sbjct: 183 QKLLDAVDTYIPVP 196
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 195 bits (496), Expect = 3e-60
Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 39/234 (16%)
Query: 45 HCNVGTIGHVDHGKTTLTAAIT---------------KVAAKIGKSKFITFDQIDRAPEE 89
H NV IGHVD GK+T T + K AA++GK F +D+ E
Sbjct: 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAE 65
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQM--- 146
+ RGITI+IA ++ T D PGH D+IKNMI+G SQ D AI+++A G+
Sbjct: 66 RERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAG 125
Query: 147 ----PQTREHLLLSKQIGIDNVVVYVNKADLVDR--EIMELVELEVRDVLTAYGYDGDNT 200
QTREH LL+ +G+ ++V VNK D V + + E + + GY+
Sbjct: 126 ISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTV 185
Query: 201 PFVFGSALLAL--------------QGDSSELGEPSIHRLLDALDKHIPNPVRD 240
PFV S ++ G LL+A+D I P R
Sbjct: 186 PFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRP 238
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 163 bits (414), Expect = 2e-48
Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 35/226 (15%)
Query: 45 HCNVGTIGHVDHGKTTLTAAIT---------------KVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVDHGK+TL + + A K+GK +DR EE
Sbjct: 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE 62
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEG----- 144
+ RG+TIN+ + + T + D PGH D++KNMI+GASQ D AI+VV+A +G
Sbjct: 63 RERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 122
Query: 145 --QMPQTREHLLLSKQIGIDNVVVYVNKADLV----DREIMELVELEVRDVLTAYGYDGD 198
QTREH++L+K +G+D ++V VNK DL D + + + +V + +YG++ +
Sbjct: 123 MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTN 182
Query: 199 NTPFVFGSALLALQGD-----SSELGEPSIHRLLDALDKHIPNPVR 239
FV A GD S + + L + LD + P +
Sbjct: 183 KVRFVPVV---APSGDNITHKSENMKWYNGPTLEEYLD-QLELPPK 224
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 132 bits (331), Expect = 9e-37
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 28/209 (13%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAH---- 100
N+G +GHVDHGKTTL AIT + + I E G+ +
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAY 67
Query: 101 -----------VEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVA-ASEGQMPQ 148
+ R + D PGH + M+SGA+ MDGAI+VVA PQ
Sbjct: 68 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 127
Query: 149 TREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL 208
TREH + IG+ N+++ NK D+V +E +++ G +N P + SAL
Sbjct: 128 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK--GTWAENVPIIPVSAL 185
Query: 209 LALQGDSSELGEPSIHRLLDALDKHIPNP 237
+ DS L++ ++++I P
Sbjct: 186 HKINIDS----------LIEGIEEYIKTP 204
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 122 bits (308), Expect = 2e-32
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGK--SKFITFDQIDRAPEEKARGITINIAHVEYS 104
N+G H+D GKTT T I +I K +D +E+ RGITI A
Sbjct: 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 67
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGH D+ + +DGAIVV +S+G PQ+ +++ +
Sbjct: 68 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-R 126
Query: 165 VVYVNKADLVDREIMELVELEVRDVLTA 192
+ + NK D ++ V +++ L A
Sbjct: 127 IAFANKMDKTGADLWL-VIRTMQERLGA 153
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 117 bits (293), Expect = 4e-31
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 45 HCNVGTIGHVDHGKTTLTAAI---------------TKVAAKIGKS--KFITFDQIDRAP 87
T G+VD GK+TL + T+ + K G + +D
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 88 EEKARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP 147
E+ +GITI++A+ +ST R + D PGH Y +NM +GAS D AI++V A G
Sbjct: 69 AEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT 128
Query: 148 QTREHLLLSKQIGIDNVVVYVNKADLVDRE--IMELVELEVRDVLTAYGYDGDNTPFVFG 205
QTR H ++ +GI ++VV +NK DL + + E ++ + + FV
Sbjct: 129 QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPM 188
Query: 206 SAL-----LALQGDSSELGEPSIHRLLDALD 231
SAL + S S+ +L+ ++
Sbjct: 189 SALKGDNVVNKSERSPWYAGQSLMEILETVE 219
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 114 bits (287), Expect = 6e-30
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 38/222 (17%)
Query: 45 HCNVGTIGHVDHGKTTLTAAIT---------------KVAAKIGKSKFITFDQIDRAPEE 89
H N+ IGHVD GK+TL I + A + GK + +D EE
Sbjct: 24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEE 83
Query: 90 KARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMP-- 147
+ +G T+ + + T R ++ D PGH Y+ NMI+GASQ D ++V++A G+
Sbjct: 84 REKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAG 143
Query: 148 -----QTREHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAY-----GYD- 196
QTREH +L++ GI+++VV +NK D + E E D L+ + GY+
Sbjct: 144 FERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNS 203
Query: 197 GDNTPFVFGSALLALQGDSSELGEPSIHR-------LLDALD 231
+ ++ S A G + + S LL+ LD
Sbjct: 204 KTDVKYMPVS---AYTGQNVKDRVDSSVCPWYQGPSLLEYLD 242
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 108 bits (271), Expect = 3e-28
Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 23/202 (11%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKF---------ITFDQIDRAPEEKARGIT 95
N+G +GHVDHGKTTLT A+T V + +I R P +
Sbjct: 5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS 64
Query: 96 INIAHVEY-STNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASE-GQMPQTREHL 153
+ + + R + D PGH + M++GAS MDGAI+V+AA+E PQTREHL
Sbjct: 65 PVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL 124
Query: 154 LLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQG 213
+ + IG N+++ NK +LVD+E ++++ + G +N P + S AL G
Sbjct: 125 MALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE--GTVAENAPIIPIS---ALHG 179
Query: 214 DSSELGEPSIHRLLDALDKHIP 235
+I L+ A++ IP
Sbjct: 180 A-------NIDVLVKAIEDFIP 194
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 112 bits (280), Expect = 3e-28
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYST- 105
N+ I HVDHGK+TLT ++ + A I +K D +E+ RGITI + +
Sbjct: 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 78
Query: 106 ---------------NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTR 150
N+ D PGH D+ + + DGA+VVV EG QT
Sbjct: 79 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 138
Query: 151 EHLLLSKQIGIDNVVVYVNKADLVDREIMELVELEVRDVL 190
L + I VVV +NK D +++ + ++
Sbjct: 139 TVLRQALGERIKPVVV-INKVDRALL-ELQVSKEDLYQTF 176
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 97.7 bits (243), Expect = 2e-25
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 336 HNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVT 395
H + EA++Y+L+K EGGR+KP S ++ MFS TW++ R+ LP + MPGE +T
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILP-PGKELAMPGEDLKLT 59
Query: 396 MTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLGNMEIPQH 436
+ L M L KGQ FT+R+ N+ + TG+VT E ++
Sbjct: 60 LILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKN 100
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 97.3 bits (242), Expect = 2e-25
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 336 HNRYEAEIYLLSKAEGGRYKPITSKYIQQMFSRTWNVQVRLDLPGEDDGMLMPGEHGTVT 395
H ++EA +Y+L K EGGR+ S Y Q + RT +V + LP + M+MPG++ T T
Sbjct: 1 HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE-MVMPGDNVTFT 59
Query: 396 MTLLYKMYLSKGQTFTIRENNKLVATGIVTKVL 428
+ L+ + L +G F IRE + V G+VTK+L
Sbjct: 60 VELIKPVALEEGLRFAIREGGRTVGAGVVTKIL 92
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 97.2 bits (242), Expect = 3e-25
Identities = 37/96 (38%), Positives = 65/96 (67%)
Query: 239 RDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQK 298
RD+ PF+LP+++ +PGRG+V GT+++G +K+ DE E LG + ++ I++F K
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 299 KVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQ 334
+ A AGDN+G L+R +K + + RG+++AK ++Q
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQ 97
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 92.9 bits (231), Expect = 8e-24
Identities = 39/89 (43%), Positives = 61/89 (68%)
Query: 241 ITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKV 300
I PF+LPI++ + GRG+V G +++G IK +E E++G T + +++F+K +
Sbjct: 2 IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 61
Query: 301 SEARAGDNVGVLLRNVKLKQIERGMLLAK 329
E RAG+NVGVLLR +K ++IERG +LAK
Sbjct: 62 DEGRAGENVGVLLRGIKREEIERGQVLAK 90
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 92.3 bits (229), Expect = 2e-23
Identities = 38/99 (38%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 237 PVRDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFN-SKFTCTISEIQV 295
PVRD+ PF++P+++ + GRG+V G I++G +K DE E++G ++ +++
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 296 FQKKVSEARAGDNVGVLLRNVKLKQIERGMLLAKADTLQ 334
+K + E AGDNVGVLLR V +++ERG +LAK ++
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSIT 99
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 86.6 bits (214), Expect = 2e-21
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 239 RDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQK 298
R+ S F +P+D+A + G G+V GTI +G +K DE ++L + + IQ F++
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVL--PINMSTKVRSIQYFKE 58
Query: 299 KVSEARAGDNVGVLLRNVKLKQIERGMLLAKADT 332
V EA+AGD VG+ ++ V KQI RG +L DT
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 79.9 bits (197), Expect = 4e-19
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEA 303
P LP+ + + G G+V +G ++ G IK + T + +++ +++ +
Sbjct: 3 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTF--APAGVTTEVKSVEMHHEQLEQG 60
Query: 304 RAGDNVGVLLRNVKLKQIERGMLLAKAD 331
GDNVG ++NV +K+I RG + A
Sbjct: 61 VPGDNVGFNVKNVSVKEIRRGNVCGDAK 88
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 77.9 bits (192), Expect = 2e-18
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 239 RDITSPFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQV-FQ 297
R + +PFI+PI + G++ G I+ G+IK+N ++ T ++ I
Sbjct: 4 RKVNAPFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVM--PINQTLEVTAIYDEAD 59
Query: 298 KKVSEARAGDNVGVLLRNVKLKQIERGMLLAKAD 331
+++S + GD V + +R ++ G +L
Sbjct: 60 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTK 92
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 77.1 bits (188), Expect = 3e-17
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 45 HCNVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYS 104
+ N+G GH+DHGKTTL+ +T++A+ D+ PE + RGITI+I +
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITIDIGFSAFK 55
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PGHAD I+ ++S A +D A++VV A EG QT EH+L+ I +
Sbjct: 56 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI-PI 114
Query: 165 VVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIH 224
+V + K+D E ++ E+ ++ +L + ++ N+ + S A G +
Sbjct: 115 IVVITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPIS---AKTGF-------GVD 163
Query: 225 RLLDALDKHIPNP 237
L + + + N
Sbjct: 164 ELKNLIITTLNNA 176
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 78.8 bits (193), Expect = 5e-17
Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 3/135 (2%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITF--DQIDRAPEEKARGITINIAHVEYS 104
V +GH GKTTLT A+ + + D PE K T+
Sbjct: 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 63
Query: 105 TNTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNV 164
D PG+ D++ + D A+V V+A G T +++++
Sbjct: 64 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-GLPR 122
Query: 165 VVYVNKADLVDREIM 179
+V V K D
Sbjct: 123 MVVVTKLDKGGDYYA 137
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 77.0 bits (188), Expect = 1e-16
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 3/138 (2%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFIT--FDQIDRAPEEKARGITINIAHVEYST 105
V +GHVDHGKTTL I A ++ IT + + +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 106 NTRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVV 165
D PGH + G + D AI++V +EG PQT+E L + + VV
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 166 VYVNKADLVDREIMELVE 183
NK D + +
Sbjct: 128 A-ANKIDRIHGWRVHEGR 144
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 72.0 bits (176), Expect = 4e-16
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 237 PVRDITSPFILPIDNA--IGVPG------RGSVCIGTIKQGTIKRNDEAELLGFN----- 283
P RD P + + + + PG G V G+I QG +K DE E+
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 284 -----SKFTCTISEIQVFQKKVSEARAGDNVGVLLR---NVKLKQIERGMLLAKADTL 333
T I +Q + V EA G VGV + + + G ++ K L
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL 118
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 74.3 bits (181), Expect = 1e-15
Identities = 30/239 (12%), Positives = 57/239 (23%), Gaps = 54/239 (22%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFD------------------QIDRAPEE 89
V +G GKTTLT + K ++ D ++ E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 90 K--------------ARGITINIAHVEYSTNTRHYAHTDCPGHADYIKNMISGASQMDG- 134
+ + Y D PG + G M+
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 135 ----AIVVVAASEGQMPQTREHLLLSKQIGIDNV----VVYVNKADLVDREIMELVELEV 186
+ + + P + + + + +NK DL+ E E +
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE-RHRKY 181
Query: 187 RDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEP------------SIHRLLDALDKH 233
+ + P + G + +E+ P L +H
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 70.0 bits (171), Expect = 1e-15
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEA 303
P +PI + + G G+V +G ++ G +K D+ + + I+ K+ +A
Sbjct: 5 PLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVF--MPAGKVGEVRSIETHHTKMDKA 62
Query: 304 RAGDNVGVLLRNVKLKQIERGMLLAKAD 331
GDN+G +R V+ K I+RG ++ +
Sbjct: 63 EPGDNIGFNVRGVEKKDIKRGDVVGHPN 90
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 69.3 bits (169), Expect = 4e-15
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 21/116 (18%)
Query: 239 RDITSPFILPIDNAIGV--PG------RGSVCIGTIKQGTIKRNDEAELLG--------- 281
RD + + + + + PG +G V G I QG K DE E+
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 282 -FNSKFTCTISEIQVFQKKVSEARAGDNVGVLLR---NVKLKQIERGMLLAKADTL 333
F T I + + +A G +GV + G ++ TL
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTL 116
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 65.8 bits (160), Expect = 7e-14
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 239 RDITSPFILPIDNAIGV--PG------RGSVCIGTIKQGTIKRNDEAELLGFN------- 283
RD++ ++ + + V PG +G V G+I QG K + E ++L
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 284 ---SKFTCTISEIQVFQKKVSEARAGDNVGVLLR---NVKLKQIERGMLLAKAD 331
IS I+ ++ EA+ G V + ++ G ++ AD
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 114
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 60.3 bits (146), Expect = 3e-12
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 244 PFILPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEA 303
P+ GT+ G + + DE + S + + I F+ ++ +A
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVV--LPSGKSSRVKSIVTFEGELEQA 63
Query: 304 RAGDNVGVLLRNVKLKQIERGMLLAKADTL 333
G V + + + I RG LL AD +
Sbjct: 64 GPGQAVTLTMEDE--IDISRGDLLVHADNV 91
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 57.2 bits (138), Expect = 4e-11
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 247 LPIDNAIGVPGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAG 306
+ ++ + + G V IGT++ G I + + I I+ ++KV A AG
Sbjct: 12 VVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSGIG----GIVRIERNREKVEFAIAG 66
Query: 307 DNVGVLLRNVKLKQIERGMLLAKADT 332
D +G+ + K+ ++++G +L T
Sbjct: 67 DRIGISIEG-KIGKVKKGDVLEIYQT 91
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 52.4 bits (124), Expect = 1e-08
Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 16/190 (8%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
V +G + GK+TL AI + T + V+ +
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV---FVDTAGL 66
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVV 166
R ++ + D ++V+ A++G Q + L ++ G +VVV
Sbjct: 67 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126
Query: 167 YVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRL 226
+ +V RE + + Y D +P +F S A +G +I R+
Sbjct: 127 FNKWDLVVHREKRYDEFTK---LFREKLYFIDYSPLIFTS---ADKGW-------NIDRM 173
Query: 227 LDALDKHIPN 236
+DA++ +
Sbjct: 174 IDAMNLAYAS 183
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 47.8 bits (112), Expect = 4e-07
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 20/194 (10%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
+ G + GK+TL +T + GK +T I+ + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 108 RHYAHTDCPGHADYIK------NMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGI 161
D H ++ + I+ G++P E +++ I
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 162 DNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEP 221
+V NK D + + L + + + F+ S A GD
Sbjct: 123 PTIVAV-NKLDKIKNVQEVINFLAEKFEV---PLSEIDKVFIPIS---AKFGD------- 168
Query: 222 SIHRLLDALDKHIP 235
+I RL + + + I
Sbjct: 169 NIERLKNRIFEVIR 182
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 42.8 bits (99), Expect = 2e-05
Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 24/188 (12%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
+ +G + GK+TL + I K T T Y
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI------HTEGAYQAIYVDTP 61
Query: 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVY 167
+ + K S ++ I VV + E +L + G V++
Sbjct: 62 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILA 119
Query: 168 VNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLL 227
VNK D V + + L + V S A G ++ +
Sbjct: 120 VNKVDNVQEKAD------LLPHLQFLASQMNFLDIVPIS---AETGL-------NVDTIA 163
Query: 228 DALDKHIP 235
+ KH+P
Sbjct: 164 AIVRKHLP 171
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 42.4 bits (98), Expect = 3e-05
Identities = 29/201 (14%), Positives = 49/201 (24%), Gaps = 31/201 (15%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
V +G + GK+TL + G + + +T + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLL------GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVY 167
+ D G + + A VV L +G +++
Sbjct: 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 121
Query: 168 VNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLL 227
NK D + + AY S AL + L
Sbjct: 122 GNKLDAAKYP---------EEAMKAYHELLPEAEPRMLS---ALDER-------QVAELK 162
Query: 228 DALDKHIPNPVRDITSPFILP 248
L +P PF P
Sbjct: 163 ADLLALMPE------GPFFYP 177
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 41.3 bits (97), Expect = 3e-05
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 261 VCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRNVKL-K 319
+ + G I++ + + T+ +Q + + A G V + +++ K
Sbjct: 22 IGGVEVLTGVIRQGYPLMND--DGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGK 79
Query: 320 QIERG 324
I G
Sbjct: 80 TIHEG 84
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 41.5 bits (96), Expect = 7e-05
Identities = 24/190 (12%), Positives = 58/190 (30%), Gaps = 18/190 (9%)
Query: 51 IGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEE-KARGITINIAHVEYSTNTRH 109
G + GKT+L +T G + + R+
Sbjct: 9 AGPQNSGKTSLLTLLT-------TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 110 YAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVN 169
A ++K +I + +E + S + GI ++++ N
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGI-DILIACN 119
Query: 170 KADLVD----REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDS-SELGEPSIH 224
K++L +I + +E E++ V+ + V ++ ++ + +
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKK---SLNEVERKINEEDYAENTLDVLQSTDG 176
Query: 225 RLLDALDKHI 234
L+ +
Sbjct: 177 FKFANLEASV 186
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 41.2 bits (95), Expect = 9e-05
Identities = 28/199 (14%), Positives = 54/199 (27%), Gaps = 34/199 (17%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
V +G D GKT L + T I + I V +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLT------GQYRDTQTSI---------TDSSAIYKVNNNRG 46
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN--- 163
+ + + S + VV ++ Q L + +
Sbjct: 47 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 106
Query: 164 ----VVVYVNKADLVD----REIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDS 215
+++ NK D+ + I + +E E+ + T S L +
Sbjct: 107 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTL--------RVTRSAAPSTLDSSSTAP 158
Query: 216 SELGEPSIHRLLDALDKHI 234
++LG+ L +
Sbjct: 159 AQLGKKGKEFEFSQLPLKV 177
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 40.5 bits (93), Expect = 1e-04
Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 26/194 (13%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
V +G + GK+TL + K K I D+ + + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLV------KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTC 56
Query: 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVY 167
+ + + ++ + D ++ V + + + E L + + ++
Sbjct: 57 GVFDNPQDIISQKMKEVTLNMIREAD-LVLFVVDGKRGITKEDESLADFLRKSTVDTILV 115
Query: 168 VNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLL 227
NKA+ + E + Y + S A ++ +L
Sbjct: 116 ANKAENLREFERE---------VKPELYSLGFGEPIPVS---AEHNI-------NLDTML 156
Query: 228 DALDKHIPNPVRDI 241
+ + K + D+
Sbjct: 157 ETIIKKLEEKGLDL 170
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 40.5 bits (93), Expect = 1e-04
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 8/162 (4%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
V G + GK++ +T + SK Q+ E +++ Y
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY--- 74
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVV 166
+ + + G +V++ ++ + + I +V
Sbjct: 75 -AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV-LV 132
Query: 167 YVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSAL 208
+ KAD + + VR+ + A+ D S+L
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGD---VQVETFSSL 171
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 39.1 bits (90), Expect = 4e-04
Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 33/197 (16%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
+VG +G GK+TL + ++ KI F T + N+ VE +
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTT--------------LVPNLGMVETD-D 47
Query: 107 TRHYAHTDCPGHADY-------IKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQI 159
R + D PG + + + + V+ S + + L Q
Sbjct: 48 GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Query: 160 GIDNVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELG 219
+ + + ++ M++ E ++ D+ P SA+ + G
Sbjct: 108 LSEYNLRLTERPQIIVANKMDMPEAA-ENLEAFKEKLTDDYPVFPISAV-------TREG 159
Query: 220 EPSIHRLLDALDKHIPN 236
+ LL + + N
Sbjct: 160 ---LRELLFEVANQLEN 173
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 37.4 bits (85), Expect = 0.002
Identities = 23/187 (12%), Positives = 52/187 (27%), Gaps = 19/187 (10%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNT 107
+ G + GK++ ++ S Q +++ +
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGF---- 81
Query: 108 RHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVY 167
+ ++ I+ I+ ++ + +V + K V+V
Sbjct: 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-GIPVIVI 140
Query: 168 VNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLL 227
KAD + + + VR L D + S+ ++ G
Sbjct: 141 ATKADKIPKGKWDKHAKVVRQTLNIDPED----ELILFSSE-------TKKG---KDEAW 186
Query: 228 DALDKHI 234
A+ K I
Sbjct: 187 GAIKKMI 193
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 33.4 bits (75), Expect = 0.027
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
+ +G + GK+TL + + + I D + + I I
Sbjct: 2 RMVIVGKPNVGKSTLLNRLL------NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDT 55
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREH 152
+ T+ I+ + + D + V+ AS + R+
Sbjct: 56 AGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI 101
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 33.1 bits (74), Expect = 0.037
Identities = 37/204 (18%), Positives = 75/204 (36%), Gaps = 32/204 (15%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
+VG +G+ + GK++L AA+T+ KI F T ++ N+ VE S
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT--------------LSPNLGVVEVSEE 48
Query: 107 TRHYAHTDCPGH----ADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGID 162
+ D PG ++ + + V++ + + L K++G
Sbjct: 49 -ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Query: 163 NVVVYVNKADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPS 222
+ + + + ++ L E V+ + A +G V S+ G
Sbjct: 108 DPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPV-----------SALTGA-G 155
Query: 223 IHRLLDALDKHIPN-PVRDITSPF 245
+ L +AL + + P ++ P
Sbjct: 156 LPALKEALHALVRSTPPPEMPKPV 179
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.0 bits (72), Expect = 0.13
Identities = 21/208 (10%), Positives = 52/208 (25%), Gaps = 33/208 (15%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
NV G GK++ + + + + + H N
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE------------VTMERHPYKHPN 105
Query: 107 TRHYAHTDCPG---HADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDN 163
+ D PG + + ++ ++ + + +
Sbjct: 106 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEF 165
Query: 164 VVVYVNKADLV----------DREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQG 213
V K D + ++++ + + + +G P +F
Sbjct: 166 YFV-RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL------- 217
Query: 214 DSSELGEPSIHRLLDALDKHIPNPVRDI 241
+ + L+D L +P R
Sbjct: 218 SNKNVCHYDFPVLMDKLISDLPIYKRHN 245
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.7 bits (65), Expect = 0.48
Identities = 27/184 (14%), Positives = 44/184 (23%), Gaps = 28/184 (15%)
Query: 51 IGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHY 110
+G GKTT I +F D P I +V
Sbjct: 8 VGLQYSGKTTFVNVIA-------SGQFNE----DMIPTVGFNMRKITKGNVTIKLWDIGG 56
Query: 111 AHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNK 170
Y + + + +D A + + V+V NK
Sbjct: 57 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNK 113
Query: 171 ADLVDREIMELVELEVRDVLTAYGYDGDNTPFVFGSALLALQGDSSELGEPSIHRLLDAL 230
DL + E+ + + S + D +I L L
Sbjct: 114 RDLPGALDEK----ELIEKMNLSAIQDREICCYSIS---CKEKD-------NIDITLQWL 159
Query: 231 DKHI 234
+H
Sbjct: 160 IQHS 163
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.74
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Query: 57 GKTTLTAAITKVAAKIGKSKF-ITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDC 115
GKTT A + G+ + D A E+ R + + +
Sbjct: 22 GKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIR 81
Query: 116 PGHADYIKNMISGASQMD 133
+ + +D
Sbjct: 82 RRVEEKARLEARDLILVD 99
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 381 EDDGMLMPGEHGTVTMTLLYKMYLSKGQ------TFTIRENNKLVATGIVTKV 427
++ L G+ V + + + K F +R+ K V GI+ V
Sbjct: 53 KNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 105
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 28.5 bits (63), Expect = 1.2
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 129 ASQMDGAIVVVAASEGQMPQTREHLL-----LSKQIGIDNVVVYVNKADLVDREIMELV 182
+ +D I+VV P+T +++ L+++ ++ V+V +NK DL D + + V
Sbjct: 8 VANVDQVILVVTVKM---PETSTYIIDKFLVLAEKNELETVMV-INKMDLYDEDDLRKV 62
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 27.2 bits (60), Expect = 1.8
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 115 CPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLV 174
GH D I + IS A V+ A Q P + + +++ +
Sbjct: 11 GEGHPDKICDQISDA--------VLDAHLQQDPDAK--VACETVAKTGMILLAGE----I 56
Query: 175 DREIMELVELEVRDVLTAYGYDGDNTPF 202
+ VR+ + GYD + F
Sbjct: 57 TSRAAVDYQKVVREAVKHIGYDDSSKGF 84
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 28.4 bits (63), Expect = 1.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFD 81
G +G + GK+TL A+TK + F T +
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIE 38
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.0 bits (61), Expect = 1.9
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 5/126 (3%)
Query: 57 GKTTLTAAITKVAAKIG-KSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHYAHTDC 115
GKT ++ +T+ IG ++ Q R + + + E R
Sbjct: 14 GKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA 73
Query: 116 PGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIGIDNVVVYVNKADLVD 175
+ G A+ + + + V +++
Sbjct: 74 LNDVRKFLSEEGG----HVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIA 129
Query: 176 REIMEL 181
I+++
Sbjct: 130 ANIVQV 135
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 26.7 bits (59), Expect = 2.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 409 TFTIRENNKLVATGIVTKV 427
F +R+ + VA G++ V
Sbjct: 87 RFAVRDMRQTVAVGVIKSV 105
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.2 bits (59), Expect = 4.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 48 VGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFD 81
+G +G + GK+T +A T V +I F T +
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIE 36
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 25.9 bits (57), Expect = 4.9
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 256 PGRGSVCIGTIKQGTIKRNDEAELLGFNSKFTCTISEIQVFQKKVSEARAGDNVGVLLRN 315
G G I G ++++D ++ + I + + + E R +
Sbjct: 16 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLK-PRPLEEMRESRKKFQKVDE 74
Query: 316 VK 317
V
Sbjct: 75 VV 76
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 4.9
Identities = 18/134 (13%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 51 IGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHY 110
IG GKT + ++ A I D R E + I + I
Sbjct: 12 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI------------ 59
Query: 111 AHTDCPGHADYIKNMISGASQMDGAIVVVAA----SEGQMPQTREHLLLSKQIGIDNVVV 166
D G + + G ++V S + ++ ++ +++
Sbjct: 60 --WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 117
Query: 167 YVNKADLVDREIME 180
R++ +
Sbjct: 118 GNKCDVNDKRQVSK 131
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 26.7 bits (58), Expect = 5.1
Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 14/104 (13%)
Query: 51 IGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTNTRHY 110
IG GK++L T + I D + + N
Sbjct: 13 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK--------------TISVDGNKAKL 58
Query: 111 AHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLL 154
A D G + S G I+V + ++ L
Sbjct: 59 AIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWL 102
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.9 bits (55), Expect = 7.7
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 9/134 (6%)
Query: 47 NVGTIGHVDHGKTTLTAAITKVAAKIGKSKFITFDQIDRAPEEKARGITINIAHVEYSTN 106
V G + GK++L A+ G+ I D + I I+ +
Sbjct: 3 KVVIAGRPNAGKSSLLNALA------GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDT 56
Query: 107 TRHYAHTDCPGHADYIKNMISGASQMDGAIVVVAASEGQMPQTREHLLLSKQIG--IDNV 164
+D I+ Q D + +V + E +
Sbjct: 57 AGLREASDEV-ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 115
Query: 165 VVYVNKADLVDREI 178
V NKAD+ +
Sbjct: 116 TVVRNKADITGETL 129
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 112
Score = 25.2 bits (55), Expect = 8.9
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 394 VTMTLLYKMYLSKGQTFTIRENNKLVATGIVTKVLGNMEIPQHNLGMIRTKEVKTKRLPY 453
+T + Y + + + L ++ G++ T++ K
Sbjct: 32 ITFGDAEESY----KIVCEEYGERPRVHSQLWSYLNDLR----EKGIVETRQNKRGEGVR 83
Query: 454 GRTT 457
GRTT
Sbjct: 84 GRTT 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,685,373
Number of extensions: 78494
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 61
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)