BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3125
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2
Length = 359
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 100 PDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIM 157
P L+T D+RFS+ + NS + ++I Q+ DAG Y CQV +T K++ +
Sbjct: 69 PVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVK 128
Query: 158 LNV 160
L+V
Sbjct: 129 LSV 131
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 19 DLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAI 76
D L+T D+RFS+ + NS + ++I Q+ DAG Y CQV +T K++ +
Sbjct: 68 DPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEV 127
Query: 77 MLNV 80
L+V
Sbjct: 128 KLSV 131
>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1
Length = 349
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 11 PVSWM-----RKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65
PV WM R+ D ++T D+RF++ + S + ++I Q+ DAG Y+CQ
Sbjct: 52 PVLWMKVDRNRQVDPLPISTGSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQ 111
Query: 66 V 66
V
Sbjct: 112 V 112
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 36 FSVIHPQNSDEWNMKIDYAQKRD-AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPL 94
FSV++ Q + + I Q +D G E + + + + ++ DR R
Sbjct: 13 FSVVYAQRTPTISY-ISQEQIKDIGGTVELECSVQYAQDYPVLWMKVDRNRQVD------ 65
Query: 95 LNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
P ++T D+RF++ + S + ++I Q+ DAG Y+CQV
Sbjct: 66 -----PLPISTGSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQV 112
>sp|P42081|CD86_HUMAN T-lymphocyte activation antigen CD86 OS=Homo sapiens GN=CD86 PE=1
SV=2
Length = 329
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 30 YTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDD 82
Y G +F +H + +SD W +++ Q +D G+Y+C ++ + M +
Sbjct: 69 YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM-----IRI 123
Query: 83 RGRGARLSAGPLLNFAFPDL-----LTTNIY 108
+ LS L NF+ P++ +T N+Y
Sbjct: 124 HQMNSELSV--LANFSQPEIVPISNITENVY 152
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 110 YTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYECQVN 147
Y G +F +H + +SD W +++ Q +D G+Y+C ++
Sbjct: 69 YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIH 113
>sp|Q6PR54|RIF1_MOUSE Telomere-associated protein RIF1 OS=Mus musculus GN=Rif1 PE=1 SV=2
Length = 2419
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 22 ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVD 81
I+T TY DA +V Q N ++ D G+ EC+ ++ +++ L++
Sbjct: 1800 IVTVKEKTYDTDASEAVSEIQGPCSEN----HSPAEDPGLSECKDISQKQLSENGELDIS 1855
Query: 82 DRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 141
D G+ ++ AG + P+ + T DA F + S + ++ +D A + D
Sbjct: 1856 DVGKACKVIAG-----SSPEGVETMELNVRNDA-FVAADSEKSTQMDVSVDVATEEDNKK 1909
Query: 142 YECQ-VNTE 149
EC+ V TE
Sbjct: 1910 DECEAVTTE 1918
>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1
Length = 5100
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 38 VIHPQNSDEWNMKIDYAQKRDAGIYECQ-VNTEPKMNMAIMLNVDDRGRGARLSAGP 93
++ P +S ++I AQ+RDAG+Y C+ VN + I L V G RL+ P
Sbjct: 740 ILAPGDSRSGTLRIPEAQERDAGLYTCKAVNELGDASAEIQLVV---GNAPRLTDPP 793
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 118 VIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
++ P +S ++I AQ+RDAG+Y C+ E
Sbjct: 740 ILAPGDSRSGTLRIPEAQERDAGLYTCKAVNE 771
>sp|A7Z0C3|DNAA_BACA2 Chromosomal replication initiator protein DnaA OS=Bacillus
amyloliquefaciens (strain FZB42) GN=dnaA PE=3 SV=1
Length = 446
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 14 WMRKRDLHILTTNIYTYTGDA-RFSVIHPQNSDEWNM 49
W+ R LH++ IY TG+ + PQN DE N
Sbjct: 53 WLESRYLHLIADTIYELTGEELSVKFVIPQNQDEENF 89
>sp|Q68EV1|CD276_XENLA CD276 antigen homolog OS=Xenopus laevis GN=cd276 PE=2 SV=1
Length = 308
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 35 RFSVIHPQNSDEWNMKIDYAQKR--DAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAG 92
R S+ H + S + NM + Q R D GIY C VN + + ++ L V L
Sbjct: 82 RISLFHEELS-KGNMSVLLQQVRLTDEGIYTCFVNVQNSSSASVSLQVGAPFTKPTLHLE 140
Query: 93 PLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA---GIYECQ 145
P D +T +TY G +++ QN + NM + + A G++ Q
Sbjct: 141 PSEALKPGDQVTVTCHTYDGYPEANILW-QNGEGQNMTENITTSQVANEKGLFHVQ 195
>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2
Length = 5065
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 38 VIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69
++ P+ S ++I AQ+RDAG Y C+ E
Sbjct: 739 ILAPEGSSSGKLRIPAAQERDAGTYTCRAVNE 770
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 118 VIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
++ P+ S ++I AQ+RDAG Y C+ E
Sbjct: 739 ILAPEGSSSGKLRIPAAQERDAGTYTCRAVNE 770
>sp|P29533|VCAM1_MOUSE Vascular cell adhesion protein 1 OS=Mus musculus GN=Vcam1 PE=1 SV=1
Length = 739
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 131 IDYAQKRDAGIYECQVNTEPKMNM-AIMLNVDGK 163
I AQ +DAGIYEC+ TE + ++ L+V GK
Sbjct: 655 IRQAQLQDAGIYECESKTEVGSQLRSLTLDVKGK 688
>sp|Q8AXY6|MUSK_CHICK Muscle, skeletal receptor tyrosine protein kinase OS=Gallus gallus
GN=MUSK PE=2 SV=1
Length = 947
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ CT MG +P VSW++ + +AR +V+ D N++I Q+ DA
Sbjct: 140 LPCTTMGNPKPSVSWIKGETV---------VKENARIAVL-----DSGNLRIHNVQREDA 185
Query: 60 GIYEC 64
G Y C
Sbjct: 186 GQYRC 190
>sp|A8F8Y4|DNAA_BACP2 Chromosomal replication initiator protein DnaA OS=Bacillus
pumilus (strain SAFR-032) GN=dnaA PE=3 SV=1
Length = 446
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 14 WMRKRDLHILTTNIYTYTGDA-RFSVIHPQNSDE 46
W+ R LH++ IY TG+ I PQN DE
Sbjct: 53 WLESRYLHLIADTIYELTGEELSIKFIIPQNQDE 86
>sp|Q02242|PDCD1_MOUSE Programmed cell death protein 1 OS=Mus musculus GN=Pdcd1 PE=1 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC-QVNTEPKMNM 74
DARF +I N +++M I ++ D+GIY C ++ PK +
Sbjct: 92 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKI 134
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC-QVNTEPKMNM 154
DARF +I N +++M I ++ D+GIY C ++ PK +
Sbjct: 92 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKI 134
>sp|Q486J8|GCST_COLP3 Aminomethyltransferase OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=gcvT PE=3 SV=1
Length = 362
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVNT 68
+P ++ DL I TT YTG+ + +I P NS E D+ QK D G+ C +
Sbjct: 172 KPFFGVQVGDLFIATTG---YTGEDGYEIIVPNNSAE-----DFWQKLLDEGVVPCGLGA 223
Query: 69 EPKMNMAIMLNV 80
+ + +N+
Sbjct: 224 RDTLRLEAGMNL 235
>sp|Q5L3Z2|DNAA_GEOKA Chromosomal replication initiator protein DnaA OS=Geobacillus
kaustophilus (strain HTA426) GN=dnaA PE=3 SV=1
Length = 450
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 14 WMRKRDLHILTTNIYTYTGDA-RFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63
W+ R H++ IYT TG+ I P N D+ ++ ++K+ YE
Sbjct: 53 WLDSRYSHLIAETIYTITGEELAVKFIIPPNQDDEELEFQSSKKKQRKPYE 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,586,380
Number of Sequences: 539616
Number of extensions: 2467950
Number of successful extensions: 4722
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4669
Number of HSP's gapped (non-prelim): 65
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)