Query psy3125
Match_columns 163
No_of_seqs 118 out of 1121
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 17:04:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.8 2.1E-19 4.5E-24 142.5 16.8 145 1-162 351-515 (1051)
2 KOG3513|consensus 99.8 6.1E-20 1.3E-24 145.5 12.0 148 1-162 446-613 (1051)
3 PHA02826 IL-1 receptor-like pr 99.8 7.2E-19 1.6E-23 121.4 13.0 101 46-146 97-207 (227)
4 KOG4194|consensus 99.7 1.5E-16 3.2E-21 120.0 14.0 151 1-161 632-796 (873)
5 KOG4221|consensus 99.7 3.8E-16 8.3E-21 124.7 13.0 148 1-162 160-327 (1381)
6 PHA02785 IL-beta-binding prote 99.7 3.8E-15 8.2E-20 108.5 13.0 144 1-161 46-216 (326)
7 cd05892 Ig_Myotilin_C C-termin 99.6 3.3E-15 7.2E-20 86.0 8.6 71 1-80 3-75 (75)
8 cd05882 Ig1_Necl-1 First (N-te 99.6 5.2E-15 1.1E-19 89.0 9.6 78 1-80 17-95 (95)
9 KOG4194|consensus 99.6 1E-14 2.2E-19 110.2 11.6 160 1-162 523-705 (873)
10 PHA02785 IL-beta-binding prote 99.6 4.3E-14 9.4E-19 103.0 14.6 134 7-157 152-322 (326)
11 KOG4221|consensus 99.6 1.3E-14 2.9E-19 116.1 11.7 147 1-160 257-415 (1381)
12 cd05852 Ig5_Contactin-1 Fifth 99.6 6.5E-15 1.4E-19 84.4 6.6 66 1-80 6-73 (73)
13 cd05893 Ig_Palladin_C C-termin 99.6 3E-14 6.6E-19 82.0 7.8 71 1-80 3-75 (75)
14 cd05762 Ig8_MLCK Eighth immuno 99.6 7.3E-14 1.6E-18 84.6 9.8 74 1-85 20-95 (98)
15 cd05748 Ig_Titin_like Immunogl 99.5 9.4E-14 2E-18 79.9 8.9 69 1-80 4-74 (74)
16 cd05881 Ig1_Necl-2 First (N-te 99.5 1.9E-13 4.1E-18 81.8 9.5 78 1-80 17-95 (95)
17 cd05723 Ig4_Neogenin Fourth im 99.5 6.4E-14 1.4E-18 79.9 7.1 66 1-80 4-71 (71)
18 cd07701 Ig1_Necl-3 First (N-te 99.5 1.2E-13 2.5E-18 83.2 8.5 78 1-80 17-95 (95)
19 cd05745 Ig3_Peroxidasin Third 99.5 4.9E-14 1.1E-18 81.1 6.3 66 1-80 7-74 (74)
20 cd05744 Ig_Myotilin_C_like Imm 99.5 1.8E-13 3.8E-18 78.9 8.5 71 1-80 3-75 (75)
21 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.5E-13 3.3E-18 83.3 8.5 76 1-80 21-98 (98)
22 cd05735 Ig8_DSCAM Eight immuno 99.5 3.5E-13 7.5E-18 80.1 9.7 77 1-85 6-86 (88)
23 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.9E-13 6.3E-18 80.0 9.1 70 1-80 15-86 (86)
24 cd05726 Ig4_Robo Fhird immunog 99.5 1.5E-13 3.2E-18 82.0 7.8 77 1-83 6-84 (90)
25 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.5E-13 5.5E-18 76.3 7.1 62 1-81 3-66 (67)
26 cd04969 Ig5_Contactin_like Fif 99.5 2.1E-13 4.5E-18 78.2 6.9 66 1-80 6-73 (73)
27 cd05763 Ig_1 Subgroup of the i 99.5 3E-13 6.5E-18 78.0 7.3 70 1-80 3-74 (75)
28 cd05746 Ig4_Peroxidasin Fourth 99.5 2.5E-13 5.3E-18 77.1 6.6 64 1-78 3-68 (69)
29 cd04974 Ig3_FGFR Third immunog 99.5 1.8E-13 3.8E-18 81.7 6.3 75 1-80 6-89 (90)
30 KOG4222|consensus 99.5 2.4E-13 5.1E-18 108.6 8.6 141 7-163 158-315 (1281)
31 cd05737 Ig_Myomesin_like_C C-t 99.5 6E-13 1.3E-17 79.7 8.5 70 1-80 21-92 (92)
32 cd05725 Ig3_Robo Third immunog 99.5 3.3E-13 7.1E-18 76.5 7.0 65 1-80 3-69 (69)
33 cd04976 Ig2_VEGFR Second immun 99.5 4.2E-13 9.2E-18 76.5 7.3 66 1-81 3-70 (71)
34 cd05854 Ig6_Contactin-2 Sixth 99.4 1.7E-12 3.7E-17 76.6 9.3 76 1-83 5-84 (85)
35 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 7.4E-13 1.6E-17 76.1 7.4 68 1-80 3-73 (74)
36 cd05743 Ig_Perlecan_D2_like Im 99.4 9.3E-13 2E-17 76.5 7.8 66 1-77 6-73 (78)
37 cd05876 Ig3_L1-CAM Third immun 99.4 6.2E-13 1.3E-17 75.8 6.9 66 1-80 3-70 (71)
38 cd05853 Ig6_Contactin-4 Sixth 99.4 1.2E-12 2.7E-17 76.8 7.7 77 1-84 5-85 (85)
39 cd05760 Ig2_PTK7 Second immuno 99.4 1.9E-12 4.1E-17 75.0 8.5 69 1-81 3-75 (77)
40 cd05865 Ig1_NCAM-1 First immun 99.4 2.1E-12 4.5E-17 77.9 8.7 72 1-80 20-95 (96)
41 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 2.2E-12 4.8E-17 75.3 8.6 69 1-78 3-78 (81)
42 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.1E-12 2.4E-17 74.4 7.1 65 1-81 3-69 (70)
43 cd05867 Ig4_L1-CAM_like Fourth 99.4 1.5E-12 3.3E-17 75.2 7.8 68 1-80 6-75 (76)
44 PF07679 I-set: Immunoglobulin 99.4 1.8E-12 3.9E-17 77.2 8.4 69 1-80 20-90 (90)
45 cd05855 Ig_TrkB_d5 Fifth domai 99.4 2.1E-12 4.6E-17 74.7 8.2 69 1-78 3-76 (79)
46 cd04975 Ig4_SCFR_like Fourth i 99.4 1.9E-12 4.1E-17 78.7 8.2 72 1-81 23-100 (101)
47 cd05736 Ig2_Follistatin_like S 99.4 2.4E-12 5.2E-17 74.3 8.3 71 1-82 3-75 (76)
48 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.4E-12 5.1E-17 77.9 8.3 74 1-80 22-97 (97)
49 cd05717 Ig1_Necl-1-3_like Firs 99.4 3.4E-12 7.5E-17 76.9 8.9 78 1-80 17-95 (95)
50 cd05851 Ig3_Contactin-1 Third 99.4 1.3E-12 2.8E-17 77.6 6.8 65 1-80 21-87 (88)
51 cd05734 Ig7_DSCAM Seventh immu 99.4 1.8E-12 3.8E-17 75.5 7.2 74 1-80 3-79 (79)
52 cd05859 Ig4_PDGFR-alpha Fourth 99.4 2.2E-12 4.8E-17 78.4 7.8 72 1-81 23-100 (101)
53 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.6E-12 7.7E-17 76.9 8.4 74 1-80 21-96 (96)
54 cd05747 Ig5_Titin_like M5, fif 99.4 4.3E-12 9.3E-17 76.0 8.5 67 1-78 23-91 (92)
55 KOG4222|consensus 99.4 5.4E-12 1.2E-16 101.0 10.9 147 1-161 245-411 (1281)
56 cd04970 Ig6_Contactin_like Six 99.4 2.7E-12 5.8E-17 75.8 7.1 77 1-84 5-85 (85)
57 cd05891 Ig_M-protein_C C-termi 99.4 5.4E-12 1.2E-16 75.5 8.5 70 1-80 21-92 (92)
58 cd05858 Ig3_FGFR-2 Third immun 99.4 4.4E-12 9.5E-17 75.7 7.8 75 1-80 6-89 (90)
59 cd04972 Ig_TrkABC_d4 Fourth do 99.4 8.8E-12 1.9E-16 74.3 8.8 69 1-80 20-90 (90)
60 cd07702 Ig2_VEGFR-1 Second imm 99.4 4.3E-12 9.4E-17 72.2 7.1 54 1-68 3-57 (72)
61 cd05730 Ig3_NCAM-1_like Third 99.4 8.2E-12 1.8E-16 75.2 8.3 70 1-82 23-94 (95)
62 cd05866 Ig1_NCAM-2 First immun 99.4 1E-11 2.3E-16 74.2 8.6 70 1-80 20-91 (92)
63 cd05868 Ig4_NrCAM Fourth immun 99.3 4E-12 8.6E-17 73.4 6.5 69 1-81 6-76 (76)
64 cd05731 Ig3_L1-CAM_like Third 99.3 4.9E-12 1.1E-16 72.0 6.8 66 1-80 3-70 (71)
65 cd05728 Ig4_Contactin-2-like F 99.3 5E-12 1.1E-16 74.6 6.8 65 1-80 19-85 (85)
66 cd05773 Ig8_hNephrin_like Eigh 99.3 2.3E-11 4.9E-16 75.1 9.3 76 1-84 28-108 (109)
67 cd04978 Ig4_L1-NrCAM_like Four 99.3 7.1E-12 1.5E-16 72.3 6.5 68 1-80 6-75 (76)
68 cd05764 Ig_2 Subgroup of the i 99.3 1.1E-11 2.4E-16 71.1 7.3 67 1-80 6-74 (74)
69 cd05857 Ig2_FGFR Second immuno 99.3 1.4E-11 3.1E-16 72.5 7.9 70 1-80 14-85 (85)
70 cd04977 Ig1_NCAM-1_like First 99.3 1.6E-11 3.5E-16 73.5 8.1 70 1-79 20-91 (92)
71 cd05851 Ig3_Contactin-1 Third 99.3 1.1E-11 2.3E-16 73.7 7.2 78 84-161 8-88 (88)
72 cd05762 Ig8_MLCK Eighth immuno 99.3 3.9E-11 8.5E-16 72.6 9.6 79 83-163 6-93 (98)
73 cd04968 Ig3_Contactin_like Thi 99.3 1.6E-11 3.6E-16 72.8 7.8 65 1-80 21-87 (88)
74 cd05765 Ig_3 Subgroup of the i 99.3 1.2E-11 2.7E-16 72.1 6.9 73 1-80 6-81 (81)
75 cd05856 Ig2_FGFRL1-like Second 99.3 1.6E-11 3.6E-16 71.7 6.7 66 1-79 14-81 (82)
76 cd04973 Ig1_FGFR First immunog 99.3 2.2E-11 4.9E-16 70.8 6.8 64 1-79 14-78 (79)
77 cd05740 Ig_CEACAM_D4 Fourth im 99.2 6.8E-11 1.5E-15 70.6 7.8 66 1-80 23-90 (91)
78 cd05889 Ig1_DNAM-1_like First 99.2 1.9E-10 4.1E-15 69.1 9.6 81 1-82 5-95 (96)
79 cd05737 Ig_Myomesin_like_C C-t 99.2 9.2E-11 2E-15 70.2 8.3 77 83-160 7-92 (92)
80 cd05750 Ig_Pro_neuregulin Immu 99.2 6E-11 1.3E-15 68.2 7.1 66 1-74 3-71 (75)
81 cd05894 Ig_C5_MyBP-C C5 immuno 99.2 1.3E-10 2.9E-15 68.6 8.5 74 87-160 5-86 (86)
82 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 6.5E-11 1.4E-15 67.0 6.8 61 1-78 6-68 (69)
83 cd04968 Ig3_Contactin_like Thi 99.2 6.6E-11 1.4E-15 70.2 6.9 78 84-161 8-88 (88)
84 cd05888 Ig1_Nectin-4_like Frst 99.2 2.5E-10 5.4E-15 69.4 9.4 80 1-80 5-99 (100)
85 cd05735 Ig8_DSCAM Eight immuno 99.2 2.5E-10 5.4E-15 67.7 9.2 71 93-163 2-84 (88)
86 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1.7E-10 3.6E-15 66.6 8.0 61 1-68 3-65 (76)
87 cd05854 Ig6_Contactin-2 Sixth 99.2 2.1E-10 4.4E-15 67.6 8.4 38 126-163 46-84 (85)
88 cd05875 Ig6_hNeurofascin_like 99.2 2.3E-10 5.1E-15 66.1 8.2 57 1-68 3-64 (77)
89 cd05865 Ig1_NCAM-1 First immun 99.2 3.8E-10 8.2E-15 68.0 9.0 76 84-160 7-95 (96)
90 cd05870 Ig5_NCAM-2 Fifth immun 99.2 3.9E-10 8.4E-15 68.3 9.1 73 86-160 10-98 (98)
91 cd05892 Ig_Myotilin_C C-termin 99.2 8.7E-11 1.9E-15 67.5 5.8 59 101-160 9-75 (75)
92 cd05887 Ig1_Nectin-3_like Firs 99.2 4E-10 8.7E-15 67.6 8.9 79 1-80 5-95 (96)
93 cd05852 Ig5_Contactin-1 Fifth 99.2 8.6E-11 1.9E-15 67.2 5.6 68 93-160 2-73 (73)
94 cd05869 Ig5_NCAM-1 Fifth immun 99.2 4.8E-10 1E-14 67.7 9.1 74 87-160 12-97 (97)
95 cd04973 Ig1_FGFR First immunog 99.2 1.1E-10 2.4E-15 67.9 6.0 75 86-160 3-79 (79)
96 cd05863 Ig2_VEGFR-3 Second imm 99.2 9.8E-11 2.1E-15 65.7 5.5 57 101-161 9-66 (67)
97 cd05853 Ig6_Contactin-4 Sixth 99.2 1.6E-10 3.5E-15 67.8 6.6 69 95-163 3-84 (85)
98 cd05775 Ig_SLAM-CD84_like_N N- 99.2 1.3E-10 2.7E-15 70.3 6.4 80 1-80 9-96 (97)
99 cd05713 Ig_MOG_like Immunoglob 99.2 4.6E-10 9.9E-15 68.2 8.9 80 1-80 6-99 (100)
100 cd05866 Ig1_NCAM-2 First immun 99.2 3.2E-10 7E-15 67.7 8.0 78 82-160 5-91 (92)
101 cd05745 Ig3_Peroxidasin Third 99.2 8.4E-11 1.8E-15 67.5 5.3 69 92-160 2-74 (74)
102 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 4.4E-10 9.6E-15 66.1 8.4 74 1-81 6-83 (84)
103 cd04975 Ig4_SCFR_like Fourth i 99.2 2.2E-10 4.8E-15 69.6 7.3 77 86-162 12-101 (101)
104 cd05733 Ig6_L1-CAM_like Sixth 99.2 1.6E-10 3.4E-15 66.9 6.2 57 1-68 3-64 (77)
105 cd05756 Ig1_IL1R_like First im 99.1 1.5E-10 3.3E-15 69.5 6.2 69 1-80 19-94 (94)
106 cd05724 Ig2_Robo Second immuno 99.1 2.2E-10 4.8E-15 67.5 6.8 66 1-79 16-85 (86)
107 cd05848 Ig1_Contactin-5 First 99.1 2.2E-10 4.7E-15 68.8 6.8 55 1-68 24-80 (94)
108 cd05893 Ig_Palladin_C C-termin 99.1 3.1E-10 6.7E-15 65.3 7.1 59 101-160 9-75 (75)
109 cd04972 Ig_TrkABC_d4 Fourth do 99.1 3.8E-10 8.3E-15 67.2 7.8 77 84-160 7-90 (90)
110 cd05874 Ig6_NrCAM Sixth immuno 99.1 3.4E-10 7.4E-15 65.4 7.2 57 1-68 3-64 (77)
111 cd04977 Ig1_NCAM-1_like First 99.1 7.3E-10 1.6E-14 66.3 8.9 81 80-160 3-92 (92)
112 cd05726 Ig4_Robo Fhird immunog 99.1 5.1E-10 1.1E-14 66.7 8.1 36 127-162 47-83 (90)
113 cd05886 Ig1_Nectin-1_like Firs 99.1 8.9E-10 1.9E-14 66.6 9.1 79 1-80 5-98 (99)
114 cd05857 Ig2_FGFR Second immuno 99.1 3.6E-10 7.7E-15 66.5 7.3 73 88-160 5-85 (85)
115 cd05742 Ig1_VEGFR_like First i 99.1 3E-10 6.6E-15 66.8 6.6 74 1-80 6-83 (84)
116 cd05730 Ig3_NCAM-1_like Third 99.1 3.2E-10 7E-15 68.2 6.9 77 87-163 13-95 (95)
117 cd05714 Ig_CSPGs_LP Immunoglob 99.1 8.7E-10 1.9E-14 67.7 8.8 81 1-82 7-104 (106)
118 PF07679 I-set: Immunoglobulin 99.1 5.7E-10 1.2E-14 66.3 7.8 77 84-160 7-90 (90)
119 cd05728 Ig4_Contactin-2-like F 99.1 1.2E-10 2.6E-15 68.6 4.7 77 84-160 6-85 (85)
120 cd05729 Ig2_FGFR_like Second i 99.1 8.1E-10 1.8E-14 64.8 8.2 69 1-79 14-84 (85)
121 cd04970 Ig6_Contactin_like Six 99.1 6.9E-10 1.5E-14 65.4 7.9 58 106-163 18-84 (85)
122 cd05867 Ig4_L1-CAM_like Fourth 99.1 1.9E-10 4.1E-15 66.3 5.4 69 93-161 2-76 (76)
123 cd04978 Ig4_L1-NrCAM_like Four 99.1 2.2E-10 4.8E-15 65.9 5.5 69 93-161 2-76 (76)
124 cd05732 Ig5_NCAM-1_like Fifth 99.1 1E-09 2.2E-14 66.1 8.5 72 87-160 11-96 (96)
125 cd05877 Ig_LP_like Immunoglobu 99.1 2.3E-09 5E-14 65.8 10.2 80 1-81 7-103 (106)
126 cd05856 Ig2_FGFRL1-like Second 99.1 3.8E-10 8.2E-15 65.8 6.4 72 89-160 6-82 (82)
127 cd05722 Ig1_Neogenin First imm 99.1 5.2E-10 1.1E-14 67.3 7.1 68 1-80 19-95 (95)
128 cd07701 Ig1_Necl-3 First (N-te 99.1 1.4E-09 3E-14 65.4 8.7 73 87-160 7-95 (95)
129 cd05718 Ig1_PVR_like First imm 99.1 1.6E-09 3.6E-14 65.4 9.1 79 1-80 5-97 (98)
130 cd04983 IgV_TCR_alpha_like Imm 99.1 1.2E-09 2.5E-14 67.4 8.5 68 1-68 18-91 (109)
131 cd05871 Ig_Semaphorin_classIII 99.1 8.7E-10 1.9E-14 65.8 7.5 72 1-82 16-90 (91)
132 cd05744 Ig_Myotilin_C_like Imm 99.1 4.8E-10 1E-14 64.5 6.2 59 101-160 9-75 (75)
133 cd05725 Ig3_Robo Third immunog 99.1 1.9E-10 4.1E-15 65.0 4.3 54 102-160 10-69 (69)
134 cd04976 Ig2_VEGFR Second immun 99.1 1.9E-10 4.1E-15 65.4 4.3 60 102-161 10-70 (71)
135 cd05748 Ig_Titin_like Immunogl 99.1 1.1E-09 2.3E-14 62.8 7.4 63 96-160 3-74 (74)
136 cd04969 Ig5_Contactin_like Fif 99.1 3.8E-10 8.2E-15 64.5 5.5 68 93-160 2-73 (73)
137 cd04974 Ig3_FGFR Third immunog 99.1 9.9E-10 2.1E-14 65.4 7.4 35 127-161 55-90 (90)
138 cd05849 Ig1_Contactin-1 First 99.1 1.2E-09 2.6E-14 65.5 7.7 54 1-68 24-79 (93)
139 cd05891 Ig_M-protein_C C-termi 99.1 1.9E-09 4E-14 64.5 8.4 76 84-160 8-92 (92)
140 cd05879 Ig_P0 Immunoglobulin ( 99.1 2.3E-09 5E-14 66.7 9.0 71 1-71 18-104 (116)
141 cd05850 Ig1_Contactin-2 First 99.1 1.5E-09 3.2E-14 65.2 7.9 65 1-78 24-92 (94)
142 cd05771 IgC_Tapasin_R Tapasin- 99.1 4.7E-09 1E-13 67.6 10.8 99 48-146 2-127 (139)
143 cd05758 Ig5_KIRREL3-like Fifth 99.1 1.7E-09 3.7E-14 65.4 8.1 71 1-78 21-97 (98)
144 cd07693 Ig1_Robo First immunog 99.1 1.5E-09 3.3E-14 65.5 7.8 74 1-80 21-99 (100)
145 cd05876 Ig3_L1-CAM Third immun 99.1 3.7E-10 8.1E-15 64.2 4.7 60 102-161 10-71 (71)
146 cd07690 Ig1_CD4 First immunogl 99.0 5.6E-10 1.2E-14 66.8 5.5 68 1-68 12-86 (94)
147 cd05747 Ig5_Titin_like M5, fif 99.0 2.5E-09 5.3E-14 64.0 8.3 75 82-158 8-91 (92)
148 cd04979 Ig_Semaphorin_C Immuno 99.0 1.2E-09 2.7E-14 64.9 6.8 71 1-82 16-88 (89)
149 cd05882 Ig1_Necl-1 First (N-te 99.0 4.1E-09 9E-14 63.3 9.1 73 87-160 7-95 (95)
150 cd05846 Ig1_MRC-OX-2_like Firs 99.0 2.7E-09 5.8E-14 64.5 8.1 79 1-80 6-96 (97)
151 cd05756 Ig1_IL1R_like First im 99.0 1.6E-09 3.6E-14 65.0 7.1 74 87-160 9-94 (94)
152 cd05868 Ig4_NrCAM Fourth immun 99.0 1.2E-09 2.7E-14 62.9 6.2 68 93-160 2-75 (76)
153 cd05858 Ig3_FGFR-2 Third immun 99.0 2.3E-09 5E-14 63.8 7.6 35 127-161 55-90 (90)
154 cd05878 Ig_Aggrecan_like Immun 99.0 7.9E-09 1.7E-13 63.8 10.2 82 1-82 7-108 (110)
155 smart00406 IGv Immunoglobulin 99.0 1.5E-09 3.2E-14 63.0 6.5 66 1-66 4-81 (81)
156 cd05902 Ig_Neurocan Immunoglob 99.0 5.3E-09 1.1E-13 64.4 8.9 81 1-81 7-107 (110)
157 cd05859 Ig4_PDGFR-alpha Fourth 99.0 1.2E-09 2.7E-14 66.4 6.0 74 88-161 14-100 (101)
158 cd05723 Ig4_Neogenin Fourth im 99.0 2.6E-09 5.7E-14 60.7 6.9 66 95-160 2-71 (71)
159 cd05731 Ig3_L1-CAM_like Third 99.0 7.8E-10 1.7E-14 62.7 4.5 60 102-161 10-71 (71)
160 cd05873 Ig_Sema4D_like Immunog 99.0 2.6E-09 5.7E-14 62.9 6.7 55 1-69 16-70 (87)
161 cd05900 Ig_Aggrecan Immunoglob 99.0 1.5E-08 3.2E-13 62.7 10.2 81 1-81 7-109 (112)
162 cd05901 Ig_Versican Immunoglob 99.0 2E-08 4.2E-13 62.2 10.7 81 1-81 7-114 (117)
163 cd05763 Ig_1 Subgroup of the i 99.0 2.5E-09 5.4E-14 61.4 6.3 65 97-161 3-75 (75)
164 cd05881 Ig1_Necl-2 First (N-te 99.0 1.2E-08 2.7E-13 61.1 9.4 48 112-160 48-95 (95)
165 cd05855 Ig_TrkB_d5 Fifth domai 99.0 4.1E-09 8.9E-14 61.0 7.0 61 100-160 8-78 (79)
166 cd05764 Ig_2 Subgroup of the i 99.0 3.5E-09 7.7E-14 60.6 6.7 68 93-160 2-74 (74)
167 cd00099 IgV Immunoglobulin var 99.0 3.5E-09 7.6E-14 64.7 7.0 69 1-69 11-89 (105)
168 cd05742 Ig1_VEGFR_like First i 99.0 2.9E-09 6.4E-14 62.5 6.4 36 125-160 47-83 (84)
169 cd05760 Ig2_PTK7 Second immuno 99.0 1.6E-09 3.5E-14 62.6 5.1 61 102-162 10-76 (77)
170 cd05740 Ig_CEACAM_D4 Fourth im 99.0 2.7E-09 5.8E-14 63.7 6.2 74 87-161 13-91 (91)
171 cd05752 Ig1_FcgammaR_like Frst 99.0 1.7E-09 3.7E-14 62.6 5.1 57 1-80 20-78 (78)
172 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.6E-08 3.4E-13 60.8 9.6 36 125-160 60-95 (95)
173 cd05752 Ig1_FcgammaR_like Frst 99.0 6.5E-09 1.4E-13 60.2 7.5 70 83-160 6-78 (78)
174 PF07686 V-set: Immunoglobulin 99.0 5.9E-09 1.3E-13 64.3 7.8 80 1-80 21-114 (114)
175 cd05741 Ig_CEACAM_D1_like Firs 99.0 2.7E-09 5.9E-14 63.7 5.9 65 1-70 6-80 (92)
176 cd05754 Ig3_Perlecan_like Thir 98.9 7.4E-09 1.6E-13 60.9 7.6 73 84-158 8-84 (85)
177 cd05765 Ig_3 Subgroup of the i 98.9 7.7E-09 1.7E-13 60.2 7.5 68 93-160 2-81 (81)
178 cd05724 Ig2_Robo Second immuno 98.9 4.7E-09 1E-13 61.8 6.6 76 85-160 4-86 (86)
179 cd04971 Ig_TrKABC_d5 Fifth dom 98.9 6.5E-09 1.4E-13 60.6 6.8 60 101-160 9-80 (81)
180 cd05715 Ig_P0-like Immunoglobu 98.9 1.5E-08 3.3E-13 63.2 8.9 70 1-70 18-103 (116)
181 cd05746 Ig4_Peroxidasin Fourth 98.9 2.1E-09 4.6E-14 60.7 4.5 63 97-159 3-69 (69)
182 cd05757 Ig2_IL1R_like Second i 98.9 5.4E-09 1.2E-13 62.4 5.8 72 89-160 7-86 (92)
183 cd04967 Ig1_Contactin First Ig 98.9 9.6E-09 2.1E-13 61.2 6.8 55 1-68 24-80 (91)
184 cd05716 Ig_pIgR Immunoglobulin 98.9 9.6E-09 2.1E-13 62.1 6.8 70 1-70 12-87 (98)
185 PF00047 ig: Immunoglobulin do 98.9 1.4E-08 3E-13 56.3 6.8 57 1-66 6-64 (64)
186 cd05864 Ig2_VEGFR-2 Second imm 98.9 3.8E-09 8.2E-14 59.8 4.4 60 101-161 9-69 (70)
187 cd05895 Ig_Pro_neuregulin-1 Im 98.9 1.1E-08 2.4E-13 58.9 6.4 62 96-157 2-75 (76)
188 cd07693 Ig1_Robo First immunog 98.9 3.2E-08 6.9E-13 59.7 8.8 78 83-160 7-99 (100)
189 cd05862 Ig1_VEGFR First immuno 98.9 1.4E-08 3E-13 59.9 7.0 77 1-82 6-86 (86)
190 cd04979 Ig_Semaphorin_C Immuno 98.9 9.2E-09 2E-13 61.1 6.2 77 86-162 5-88 (89)
191 cd05872 Ig_Sema4B_like Immunog 98.9 1.3E-08 2.8E-13 59.6 6.5 66 1-81 16-83 (85)
192 smart00409 IG Immunoglobulin. 98.9 5.1E-08 1.1E-12 56.5 9.1 70 1-80 14-85 (86)
193 smart00410 IG_like Immunoglobu 98.9 5.1E-08 1.1E-12 56.5 9.1 70 1-80 14-85 (86)
194 cd07700 IgV_CD8_beta Immunoglo 98.9 2.3E-08 5.1E-13 61.4 7.9 67 1-67 11-92 (107)
195 cd05899 IgV_TCR_beta Immunoglo 98.9 1.3E-08 2.8E-13 62.9 6.7 66 1-68 18-93 (110)
196 cd05753 Ig2_FcgammaR_like Seco 98.9 2.4E-08 5.1E-13 58.5 7.4 71 86-160 8-83 (83)
197 cd04984 IgV_L_lambda Immunoglo 98.8 2.8E-08 6.1E-13 60.1 7.9 66 1-68 11-84 (98)
198 cd04982 IgV_TCR_gamma Immunogl 98.8 1.4E-08 3E-13 63.3 6.7 68 1-68 18-98 (116)
199 cd05880 Ig_EVA1 Immunoglobulin 98.8 3.7E-08 8.1E-13 61.3 8.6 70 1-70 18-102 (115)
200 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 5.5E-08 1.2E-12 57.1 8.8 36 126-161 45-83 (84)
201 cd05734 Ig7_DSCAM Seventh immu 98.8 1.5E-08 3.2E-13 58.8 6.2 34 127-160 44-79 (79)
202 cd05750 Ig_Pro_neuregulin Immu 98.8 1.7E-08 3.6E-13 57.8 6.3 56 102-157 11-74 (75)
203 cd05739 Ig3_RPTP_IIa_LAR_like 98.8 1.3E-08 2.8E-13 57.5 5.7 64 93-158 2-68 (69)
204 cd07706 IgV_TCR_delta Immunogl 98.8 1.5E-08 3.2E-13 63.2 6.3 68 1-68 19-93 (116)
205 cd05773 Ig8_hNephrin_like Eigh 98.8 5.6E-08 1.2E-12 59.9 8.5 72 92-163 23-107 (109)
206 cd05743 Ig_Perlecan_D2_like Im 98.8 1.1E-08 2.4E-13 59.2 5.0 66 93-160 2-76 (78)
207 cd05738 Ig2_RPTP_IIa_LAR_like 98.8 1.1E-08 2.3E-13 58.6 4.8 59 103-161 11-74 (74)
208 cd05736 Ig2_Follistatin_like S 98.8 1.8E-08 4E-13 57.9 5.7 60 103-162 11-75 (76)
209 cd04980 IgV_L_kappa Immunoglob 98.8 5.1E-08 1.1E-12 59.8 7.8 66 1-68 20-92 (106)
210 PHA02826 IL-1 receptor-like pr 98.8 3E-08 6.5E-13 68.8 7.5 55 1-68 149-209 (227)
211 cd05873 Ig_Sema4D_like Immunog 98.8 1.2E-08 2.7E-13 60.1 4.8 61 86-146 5-67 (87)
212 cd05757 Ig2_IL1R_like Second i 98.8 4.7E-08 1E-12 58.4 6.9 43 10-67 30-72 (92)
213 PHA03376 BARF1; Provisional 98.8 2.7E-07 5.8E-12 61.1 10.8 67 1-69 31-109 (221)
214 cd05722 Ig1_Neogenin First imm 98.8 5.2E-08 1.1E-12 58.5 7.1 77 84-160 6-95 (95)
215 cd05720 Ig_CD8_alpha Immunoglo 98.8 4.8E-08 1E-12 59.7 7.0 65 1-67 11-89 (104)
216 cd05898 Ig5_KIRREL3 Fifth immu 98.8 8.7E-08 1.9E-12 57.7 8.0 71 1-78 21-97 (98)
217 cd05729 Ig2_FGFR_like Second i 98.8 1.1E-07 2.3E-12 55.7 8.1 72 89-160 6-85 (85)
218 cd05862 Ig1_VEGFR First immuno 98.8 4.5E-08 9.8E-13 57.7 6.4 37 125-161 48-85 (86)
219 cd07702 Ig2_VEGFR-1 Second imm 98.7 1.4E-08 3.1E-13 57.7 3.8 58 101-158 9-68 (72)
220 cd05712 Ig_Siglec_N Immunoglob 98.7 6.7E-08 1.4E-12 60.6 7.1 68 1-68 19-101 (119)
221 cd05754 Ig3_Perlecan_like Thir 98.7 3E-08 6.6E-13 58.3 5.1 59 1-76 21-82 (85)
222 smart00408 IGc2 Immunoglobulin 98.7 5.1E-08 1.1E-12 53.2 5.6 53 1-68 7-60 (63)
223 cd05877 Ig_LP_like Immunoglobu 98.7 1.4E-07 3.1E-12 57.7 7.8 48 114-162 56-104 (106)
224 cd05758 Ig5_KIRREL3-like Fifth 98.7 5.6E-07 1.2E-11 54.3 10.1 73 86-158 10-97 (98)
225 cd05849 Ig1_Contactin-1 First 98.7 1.8E-07 3.9E-12 56.0 7.3 67 93-159 20-92 (93)
226 PHA02987 Ig domain OX-2-like p 98.6 2.7E-07 5.9E-12 61.1 8.2 82 1-83 35-124 (189)
227 cd05845 Ig2_L1-CAM_like Second 98.6 3.1E-08 6.6E-13 59.2 3.5 55 1-68 23-80 (95)
228 cd05753 Ig2_FcgammaR_like Seco 98.6 5.8E-08 1.3E-12 56.9 4.6 61 1-80 19-83 (83)
229 cd05749 Ig2_Tyro3_like Second 98.6 2.5E-07 5.4E-12 53.9 7.1 49 1-68 18-68 (81)
230 cd05871 Ig_Semaphorin_classIII 98.6 1.6E-07 3.5E-12 56.0 6.3 73 89-161 8-89 (91)
231 cd04983 IgV_TCR_alpha_like Imm 98.6 3.5E-07 7.6E-12 56.2 8.1 33 114-146 57-89 (109)
232 cd05848 Ig1_Contactin-5 First 98.6 2E-07 4.3E-12 55.9 6.7 67 92-158 19-92 (94)
233 cd05727 Ig2_Contactin-2-like S 98.6 6.2E-08 1.3E-12 58.0 4.1 57 1-68 23-81 (96)
234 smart00409 IG Immunoglobulin. 98.6 1.4E-06 3E-11 50.3 9.9 72 87-160 4-85 (86)
235 smart00410 IG_like Immunoglobu 98.6 1.4E-06 3E-11 50.3 9.9 72 87-160 4-85 (86)
236 cd05850 Ig1_Contactin-2 First 98.6 4E-07 8.8E-12 54.6 7.6 67 93-159 20-93 (94)
237 cd05759 Ig2_KIRREL3-like Secon 98.6 6E-07 1.3E-11 52.3 8.1 60 1-68 4-67 (82)
238 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 2.1E-07 4.5E-12 56.2 6.0 23 46-68 69-91 (104)
239 cd05774 Ig_CEACAM_D1 First imm 98.6 5.3E-07 1.2E-11 55.1 7.7 42 33-79 61-104 (105)
240 cd05749 Ig2_Tyro3_like Second 98.6 3.7E-07 8E-12 53.2 6.6 71 84-158 5-80 (81)
241 cd05713 Ig_MOG_like Immunoglob 98.6 9.5E-07 2.1E-11 53.5 8.5 46 115-160 52-99 (100)
242 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.5E-07 3.3E-12 57.6 4.8 40 123-162 64-104 (106)
243 cd05900 Ig_Aggrecan Immunoglob 98.5 9.9E-07 2.1E-11 54.5 8.0 48 115-162 61-110 (112)
244 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 4.1E-07 8.8E-12 55.0 5.9 73 88-160 11-104 (104)
245 cd04981 IgV_H Immunoglobulin ( 98.5 1.3E-06 2.9E-11 54.5 8.1 68 1-68 17-97 (117)
246 PF07686 V-set: Immunoglobulin 98.5 5.9E-07 1.3E-11 55.2 6.4 37 124-160 76-114 (114)
247 cd05860 Ig4_SCFR Fourth immuno 98.5 1.6E-06 3.5E-11 52.2 7.9 74 1-81 23-100 (101)
248 cd05898 Ig5_KIRREL3 Fifth immu 98.5 5.1E-06 1.1E-10 50.1 10.1 71 88-158 12-97 (98)
249 cd05872 Ig_Sema4B_like Immunog 98.5 4.2E-07 9.1E-12 53.3 5.2 74 87-160 6-82 (85)
250 cd05888 Ig1_Nectin-4_like Frst 98.5 6.7E-07 1.5E-11 54.2 6.2 47 115-161 52-100 (100)
251 cd05897 Ig2_IL1R2_like Second 98.5 5.2E-07 1.1E-11 54.0 5.3 72 90-161 8-94 (95)
252 cd05715 Ig_P0-like Immunoglobu 98.5 2.6E-06 5.6E-11 53.1 8.6 37 124-160 77-116 (116)
253 cd05885 Ig2_Necl-4 Second immu 98.4 1.9E-06 4E-11 49.9 7.2 58 1-68 4-64 (80)
254 cd05897 Ig2_IL1R2_like Second 98.4 1.3E-06 2.7E-11 52.4 6.6 46 10-67 30-75 (95)
255 cd05751 Ig1_LILRB1_like First 98.4 1.4E-06 3E-11 51.9 6.7 74 87-160 11-90 (91)
256 smart00408 IGc2 Immunoglobulin 98.4 5.7E-07 1.2E-11 48.9 4.7 57 92-148 2-61 (63)
257 cd05880 Ig_EVA1 Immunoglobulin 98.4 2.5E-06 5.4E-11 53.1 7.8 37 124-160 76-115 (115)
258 PF13895 Ig_2: Immunoglobulin 98.4 2.5E-06 5.5E-11 49.0 7.4 59 1-80 19-80 (80)
259 cd05878 Ig_Aggrecan_like Immun 98.4 1.2E-06 2.7E-11 54.0 6.3 48 115-162 59-108 (110)
260 cd05774 Ig_CEACAM_D1 First imm 98.4 4.1E-06 8.8E-11 51.2 8.1 74 87-160 8-105 (105)
261 PF00047 ig: Immunoglobulin do 98.4 3.1E-06 6.6E-11 46.7 6.9 55 92-146 1-64 (64)
262 cd05902 Ig_Neurocan Immunoglob 98.4 1.3E-06 2.8E-11 53.9 5.7 48 115-162 59-108 (110)
263 cd07690 Ig1_CD4 First immunogl 98.4 1.7E-06 3.6E-11 51.8 6.0 25 125-149 63-88 (94)
264 cd05886 Ig1_Nectin-1_like Firs 98.4 1.8E-06 4E-11 52.2 6.1 46 114-160 51-98 (99)
265 cd05716 Ig_pIgR Immunoglobulin 98.4 7.5E-06 1.6E-10 49.3 8.7 37 114-150 51-87 (98)
266 cd05733 Ig6_L1-CAM_like Sixth 98.4 1.4E-06 3.1E-11 50.1 5.3 62 97-158 3-76 (77)
267 cd05874 Ig6_NrCAM Sixth immuno 98.3 2E-06 4.4E-11 49.5 5.6 63 96-158 2-76 (77)
268 cd05879 Ig_P0 Immunoglobulin ( 98.3 1.7E-05 3.7E-10 49.4 10.0 46 115-160 68-116 (116)
269 cd05846 Ig1_MRC-OX-2_like Firs 98.3 6.7E-06 1.5E-10 49.5 8.0 38 123-160 57-96 (97)
270 cd05887 Ig1_Nectin-3_like Firs 98.3 2.6E-06 5.6E-11 51.2 6.0 45 115-160 49-95 (96)
271 cd05741 Ig_CEACAM_D1_like Firs 98.3 6.2E-06 1.3E-10 49.0 7.7 34 127-160 57-92 (92)
272 cd05727 Ig2_Contactin-2-like S 98.3 1.8E-06 3.8E-11 51.8 5.2 64 86-149 12-83 (96)
273 cd05875 Ig6_hNeurofascin_like 98.3 3E-06 6.4E-11 48.8 5.7 58 96-153 2-70 (77)
274 cd05775 Ig_SLAM-CD84_like_N N- 98.3 1.1E-05 2.4E-10 48.6 8.3 36 125-160 59-96 (97)
275 cd05899 IgV_TCR_beta Immunoglo 98.3 5.4E-06 1.2E-10 51.1 7.1 22 125-146 70-91 (110)
276 cd05718 Ig1_PVR_like First imm 98.3 4.6E-06 1E-10 50.2 6.6 36 125-160 60-97 (98)
277 cd07706 IgV_TCR_delta Immunogl 98.3 5.1E-06 1.1E-10 51.7 7.0 33 114-146 59-91 (116)
278 cd04980 IgV_L_kappa Immunoglob 98.3 7.9E-06 1.7E-10 50.0 7.4 23 124-146 68-90 (106)
279 cd05889 Ig1_DNAM-1_like First 98.2 4.7E-06 1E-10 50.0 6.0 37 125-161 58-94 (96)
280 PF13895 Ig_2: Immunoglobulin 98.2 8.8E-06 1.9E-10 46.7 7.1 68 87-160 9-80 (80)
281 cd04982 IgV_TCR_gamma Immunogl 98.2 3.9E-06 8.4E-11 52.2 5.8 33 114-146 64-96 (116)
282 cd05901 Ig_Versican Immunoglob 98.2 5.9E-06 1.3E-10 51.2 6.4 39 124-162 76-115 (117)
283 cd00099 IgV Immunoglobulin var 98.2 7.3E-06 1.6E-10 49.9 6.5 36 114-149 54-90 (105)
284 cd05721 IgV_CTLA-4 Immunoglobu 98.2 6.4E-06 1.4E-10 50.7 6.0 66 1-66 18-93 (115)
285 cd04967 Ig1_Contactin First Ig 98.2 5.1E-06 1.1E-10 49.4 5.5 61 93-153 20-86 (91)
286 cd05845 Ig2_L1-CAM_like Second 98.2 1.1E-05 2.3E-10 48.3 6.6 65 85-149 11-82 (95)
287 PF13927 Ig_3: Immunoglobulin 98.2 1.7E-06 3.8E-11 49.0 3.2 53 1-67 20-74 (75)
288 cd07700 IgV_CD8_beta Immunoglo 98.2 1.1E-05 2.4E-10 49.5 6.6 33 114-146 59-91 (107)
289 cd05711 Ig_FcalphaRI Immunoglo 98.2 1.6E-05 3.4E-10 47.6 7.1 75 86-160 9-94 (94)
290 cd05860 Ig4_SCFR Fourth immuno 98.1 3.3E-05 7.2E-10 46.5 7.8 37 125-161 63-100 (101)
291 cd00096 Ig Immunoglobulin doma 98.1 1.3E-05 2.8E-10 44.0 5.9 62 1-69 3-65 (74)
292 cd04984 IgV_L_lambda Immunoglo 98.1 1.9E-05 4.2E-10 47.5 6.8 31 114-146 52-82 (98)
293 PHA02987 Ig domain OX-2-like p 98.1 6.6E-05 1.4E-09 49.9 9.0 38 125-162 83-123 (189)
294 cd05751 Ig1_LILRB1_like First 98.0 3.1E-05 6.7E-10 46.0 6.1 25 44-68 50-74 (91)
295 cd05712 Ig_Siglec_N Immunoglob 98.0 8E-05 1.7E-09 46.6 7.9 32 115-146 68-99 (119)
296 cd05885 Ig2_Necl-4 Second immu 97.9 2.9E-05 6.3E-10 44.9 5.0 66 95-160 2-80 (80)
297 cd00098 IgC Immunoglobulin Con 97.9 2.9E-05 6.2E-10 46.3 5.2 60 1-69 18-84 (95)
298 cd07694 Ig2_CD4 Second immunog 97.9 0.00018 4E-09 42.0 8.0 73 87-161 9-86 (88)
299 smart00406 IGv Immunoglobulin 97.9 1.4E-05 3.1E-10 46.0 3.4 34 113-146 48-81 (81)
300 cd07705 Ig2_Necl-1 Second immu 97.9 0.00012 2.7E-09 42.7 7.4 59 1-68 4-67 (83)
301 KOG3515|consensus 97.9 0.0001 2.3E-09 58.7 8.6 144 1-160 27-200 (741)
302 cd05883 Ig2_Necl-2 Second immu 97.9 0.00027 5.8E-09 41.1 8.2 72 1-81 4-80 (82)
303 cd05761 Ig2_Necl-1-4_like Seco 97.9 0.0002 4.3E-09 41.7 7.6 58 1-68 4-66 (82)
304 PF13927 Ig_3: Immunoglobulin 97.8 5.1E-05 1.1E-09 42.8 3.9 52 95-146 18-73 (75)
305 cd07694 Ig2_CD4 Second immunog 97.7 0.00023 5E-09 41.6 6.2 38 44-81 48-86 (88)
306 PHA02633 hypothetical protein; 97.7 0.00013 2.9E-09 39.4 4.4 39 45-83 16-55 (63)
307 cd05711 Ig_FcalphaRI Immunoglo 97.7 0.00026 5.6E-09 42.4 6.2 55 1-66 20-74 (94)
308 cd04981 IgV_H Immunoglobulin ( 97.7 0.00022 4.8E-09 44.5 6.1 22 125-146 74-95 (117)
309 cd05759 Ig2_KIRREL3-like Secon 97.5 0.00057 1.2E-08 39.6 6.0 34 127-160 46-82 (82)
310 PHA02633 hypothetical protein; 97.4 0.00054 1.2E-08 37.1 4.2 36 126-161 17-53 (63)
311 cd05884 Ig2_Necl-3 Second immu 97.4 0.0014 3E-08 38.2 6.4 59 1-68 4-67 (83)
312 smart00407 IGc1 Immunoglobulin 97.4 0.0026 5.6E-08 36.2 7.4 59 1-68 4-69 (75)
313 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00037 8E-09 42.5 3.7 32 113-146 57-88 (104)
314 cd05883 Ig2_Necl-2 Second immu 97.2 0.0034 7.4E-08 36.5 6.8 68 95-162 2-81 (82)
315 cd05771 IgC_Tapasin_R Tapasin- 97.1 0.0041 8.9E-08 39.8 7.2 61 1-68 58-129 (139)
316 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0034 7.4E-08 37.5 6.2 60 1-69 19-85 (94)
317 PF08204 V-set_CD47: CD47 immu 97.1 0.00068 1.5E-08 42.7 3.1 77 1-80 32-119 (130)
318 PHA03376 BARF1; Provisional 97.0 0.011 2.3E-07 39.8 8.5 22 125-146 85-106 (221)
319 cd07703 Ig2_Nectin-2_like Seco 97.0 0.0052 1.1E-07 36.8 6.3 59 1-68 20-80 (95)
320 cd00096 Ig Immunoglobulin doma 96.8 0.0074 1.6E-07 32.5 6.0 26 124-149 40-66 (74)
321 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0064 1.4E-07 36.5 5.9 60 1-68 19-84 (96)
322 cd07699 IgC_L Immunoglobulin C 96.8 0.0055 1.2E-07 37.0 5.7 59 1-68 22-87 (100)
323 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0031 6.8E-08 35.0 4.0 34 46-82 32-65 (69)
324 cd07698 IgC_MHC_I_alpha3 Class 96.8 0.0088 1.9E-07 35.6 6.3 16 1-16 19-37 (93)
325 cd05719 Ig2_PVR_like Second im 96.7 0.012 2.5E-07 35.3 6.3 58 2-68 21-80 (95)
326 cd05767 IgC_MHC_II_alpha Class 96.7 0.015 3.4E-07 34.7 6.8 57 1-69 20-83 (94)
327 cd07692 Ig_CD3_epsilon Immunog 96.6 0.032 6.8E-07 30.8 7.1 48 91-146 6-53 (65)
328 PHA02982 hypothetical protein; 96.6 0.0042 9.1E-08 42.2 4.1 66 1-68 44-121 (251)
329 cd05755 Ig2_ICAM-1_like Second 96.5 0.0097 2.1E-07 36.0 5.2 56 1-67 21-82 (100)
330 PF07354 Sp38: Zona-pellucida- 96.5 0.004 8.7E-08 43.7 3.9 45 10-67 13-57 (271)
331 cd05721 IgV_CTLA-4 Immunoglobu 96.5 0.026 5.6E-07 34.9 7.1 34 113-146 60-93 (115)
332 cd05766 IgC_MHC_II_beta Class 96.5 0.027 5.9E-07 33.6 7.0 57 1-69 19-82 (94)
333 PF11465 Receptor_2B4: Natural 96.4 0.013 2.7E-07 35.6 5.1 43 34-80 62-106 (108)
334 cd07697 IgC_TCR_gamma T cell r 96.4 0.032 6.9E-07 33.5 6.8 16 1-16 21-39 (96)
335 cd05770 IgC_beta2m Class I maj 96.4 0.027 5.8E-07 33.6 6.4 56 1-69 20-82 (93)
336 cd05768 IgC_CH4 CH4 domain (fo 95.9 0.034 7.3E-07 33.7 5.5 59 1-68 21-89 (102)
337 cd05772 IgC_SIRP Signal-regula 95.8 0.05 1.1E-06 33.6 5.9 59 1-69 26-91 (111)
338 cd04985 IgC_CH1 CH1 domain (fi 95.8 0.036 7.8E-07 33.2 5.0 60 1-70 21-87 (95)
339 PF07654 C1-set: Immunoglobuli 95.7 0.057 1.2E-06 31.2 5.5 56 1-68 13-75 (83)
340 cd05769 IgC_TCR_beta T cell re 95.3 0.12 2.5E-06 32.2 6.2 61 1-70 23-92 (115)
341 PF08204 V-set_CD47: CD47 immu 95.3 0.096 2.1E-06 33.2 5.8 70 90-160 25-119 (130)
342 cd04986 IgC_CH2 CH2 domain (se 95.2 0.12 2.5E-06 31.2 5.7 17 1-17 24-44 (99)
343 cd07691 Ig_CD3_gamma_delta Imm 95.0 0.14 3E-06 28.5 5.3 45 94-146 8-52 (69)
344 cd05755 Ig2_ICAM-1_like Second 95.0 0.25 5.4E-06 29.9 6.8 61 88-148 12-84 (100)
345 KOG4597|consensus 95.0 0.051 1.1E-06 41.5 4.5 75 1-81 216-292 (560)
346 PF08205 C2-set_2: CD80-like C 94.7 0.38 8.2E-06 28.0 7.1 60 1-68 19-82 (89)
347 KOG3515|consensus 94.6 0.15 3.3E-06 41.4 6.6 101 47-147 163-286 (741)
348 cd07704 Ig2_Nectin-3-4_like Se 94.6 0.19 4.2E-06 30.2 5.6 57 3-68 24-82 (97)
349 PF11465 Receptor_2B4: Natural 94.4 0.11 2.4E-06 31.6 4.2 27 126-152 70-97 (108)
350 cd00098 IgC Immunoglobulin Con 94.3 0.12 2.6E-06 30.4 4.4 24 127-150 62-86 (95)
351 cd07705 Ig2_Necl-1 Second immu 94.1 0.23 5E-06 28.8 5.1 34 127-160 46-83 (83)
352 cd05761 Ig2_Necl-1-4_like Seco 94.0 0.63 1.4E-05 26.7 7.0 23 127-149 45-68 (82)
353 PF07354 Sp38: Zona-pellucida- 93.8 0.095 2.1E-06 37.0 3.6 45 102-146 10-56 (271)
354 PHA03042 CD47-like protein; Pr 93.0 1.7 3.6E-05 31.1 8.6 67 90-159 29-103 (286)
355 cd05719 Ig2_PVR_like Second im 92.8 1.2 2.7E-05 26.5 7.1 69 92-160 15-95 (95)
356 PHA02914 Immunoglobulin-like d 91.8 0.54 1.2E-05 35.4 5.3 37 45-81 79-117 (500)
357 KOG1480|consensus 90.6 0.13 2.9E-06 41.6 1.3 49 6-68 155-204 (909)
358 PHA03042 CD47-like protein; Pr 89.7 2.5 5.3E-05 30.3 6.8 61 1-79 36-103 (286)
359 PHA03271 envelope glycoprotein 89.5 8 0.00017 29.7 11.8 71 44-114 204-287 (490)
360 PHA02982 hypothetical protein; 89.0 0.63 1.4E-05 32.0 3.4 23 124-146 97-119 (251)
361 cd07703 Ig2_Nectin-2_like Seco 88.4 3.7 8.1E-05 24.5 7.3 68 92-159 15-94 (95)
362 PHA02914 Immunoglobulin-like d 88.3 1.3 2.7E-05 33.6 4.8 37 125-161 79-117 (500)
363 PHA03282 envelope glycoprotein 87.3 1.8 3.8E-05 33.5 5.1 44 33-82 116-162 (540)
364 PF08205 C2-set_2: CD80-like C 87.3 2.3 5E-05 24.5 4.8 58 92-149 14-84 (89)
365 PF05790 C2-set: Immunoglobuli 86.1 4.7 0.0001 23.2 6.5 19 129-147 45-63 (80)
366 cd07704 Ig2_Nectin-3-4_like Se 86.0 5.6 0.00012 23.9 6.2 76 85-160 9-97 (97)
367 PF01688 Herpes_gI: Alphaherpe 85.5 2.1 4.5E-05 28.3 4.2 35 126-160 123-158 (161)
368 PHA02865 MHC-like TNF binding 84.8 2.5 5.5E-05 31.4 4.8 17 1-17 219-238 (338)
369 KOG4597|consensus 83.1 1.3 2.9E-05 34.2 2.8 36 126-161 256-292 (560)
370 PHA03283 envelope glycoprotein 83.0 5.8 0.00013 31.2 6.2 37 126-162 133-170 (542)
371 cd07689 Ig2_VCAM-1 Second immu 80.2 6.2 0.00013 23.8 4.5 13 55-67 70-83 (99)
372 PHA03282 envelope glycoprotein 79.6 3.5 7.7E-05 31.9 4.0 36 126-161 123-161 (540)
373 PF05790 C2-set: Immunoglobuli 75.0 14 0.00029 21.3 4.8 32 49-80 45-78 (80)
374 PHA03269 envelope glycoprotein 72.6 46 0.00099 26.4 12.1 73 42-115 284-370 (566)
375 cd07689 Ig2_VCAM-1 Second immu 72.6 18 0.0004 21.8 5.7 57 89-146 12-82 (99)
376 PHA03289 envelope glycoprotein 72.5 8.6 0.00019 28.3 4.2 35 126-160 121-156 (352)
377 PHA03290 envelope glycoprotein 72.3 8.6 0.00019 28.5 4.2 35 124-158 126-161 (357)
378 PHA03189 UL14 tegument protein 70.6 40 0.00088 24.9 8.5 18 53-70 139-156 (348)
379 PHA03286 envelope glycoprotein 70.5 23 0.0005 27.5 6.3 66 95-163 98-165 (492)
380 PF01688 Herpes_gI: Alphaherpe 70.0 20 0.00044 23.7 5.2 24 45-68 122-145 (161)
381 PHA03292 envelope glycoprotein 69.2 10 0.00022 28.6 4.1 35 125-159 126-161 (413)
382 KOG1480|consensus 68.2 3.8 8.2E-05 33.8 1.9 61 89-149 141-206 (909)
383 PHA03273 envelope glycoprotein 63.3 72 0.0016 25.1 9.6 101 46-146 197-321 (486)
384 PHA03290 envelope glycoprotein 62.3 26 0.00056 26.1 5.0 24 45-68 127-150 (357)
385 KOG3611|consensus 60.4 22 0.00048 29.7 4.9 24 47-70 612-635 (737)
386 PF06214 SLAM: Signaling lymph 55.5 14 0.0003 22.8 2.3 29 34-66 94-122 (126)
387 cd05890 Ig2_Nectin-1_like Seco 54.8 45 0.00098 20.1 5.1 58 2-68 26-85 (98)
388 PHA03291 envelope glycoprotein 54.2 27 0.00059 26.2 4.0 35 126-160 128-163 (401)
389 PF02480 Herpes_gE: Alphaherpe 52.0 19 0.00041 28.0 3.2 38 45-82 87-126 (439)
390 PHA03281 envelope glycoprotein 51.2 35 0.00075 27.4 4.4 37 126-162 297-335 (642)
391 KOG0200|consensus 51.1 1.2E+02 0.0026 24.8 7.6 24 45-68 11-34 (609)
392 PF11327 DUF3129: Protein of u 50.5 44 0.00096 22.7 4.4 37 45-81 91-129 (184)
393 PF02440 Adeno_E3_CR1: Adenovi 49.7 30 0.00066 19.0 2.9 15 3-17 8-23 (63)
394 PHA03289 envelope glycoprotein 48.8 52 0.0011 24.5 4.7 24 45-68 120-143 (352)
395 PHA03292 envelope glycoprotein 48.3 61 0.0013 24.7 5.1 24 45-68 126-149 (413)
396 PF02480 Herpes_gE: Alphaherpe 44.0 50 0.0011 25.8 4.4 24 45-68 267-290 (439)
397 PF11327 DUF3129: Protein of u 43.3 63 0.0014 22.0 4.3 21 126-146 92-112 (184)
398 PHA03270 envelope glycoprotein 43.0 1.6E+02 0.0035 23.1 10.8 69 46-115 181-262 (466)
399 PHA03281 envelope glycoprotein 40.4 51 0.0011 26.5 3.9 21 126-146 474-494 (642)
400 PHA03291 envelope glycoprotein 37.6 56 0.0012 24.7 3.5 25 45-69 127-151 (401)
401 PHA03240 envelope glycoprotein 35.4 18 0.00038 25.2 0.7 22 45-66 103-124 (258)
402 PHA02935 Hypothetical protein; 32.3 73 0.0016 22.0 3.3 18 129-146 104-121 (349)
403 PF01082 Cu2_monooxygen: Coppe 32.0 86 0.0019 19.8 3.4 26 46-71 3-29 (132)
404 KOG3611|consensus 30.8 45 0.00097 28.0 2.4 25 129-153 614-638 (737)
405 PF03921 ICAM_N: Intercellular 30.5 1.2E+02 0.0027 18.0 7.1 79 79-161 5-86 (91)
406 PF11781 RRN7: RNA polymerase 27.9 29 0.00063 16.6 0.6 10 56-65 20-29 (36)
407 PHA03269 envelope glycoprotein 27.7 2.4E+02 0.0051 22.7 5.5 23 124-146 286-308 (566)
408 PF06651 DUF1163: Protein of u 23.6 85 0.0018 17.4 1.9 20 127-146 23-44 (70)
409 PF15096 G6B: G6B family 23.1 75 0.0016 21.7 2.0 27 55-83 82-108 (224)
No 1
>KOG3513|consensus
Probab=99.84 E-value=2.1e-19 Score=142.55 Aligned_cols=145 Identities=20% Similarity=0.319 Sum_probs=113.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+.. ...++|+.+.. ..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 351 ~eC~a~g~P~p~v~Wlk--Ng~pl~~----~~r~~~~~i~~------g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 351 LECKASGKPNPTVKWLK--NGEPLEP----AERDPRYKIDD------GTLIISNVQESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred EEEEecCCCCCceEEee--CCeecCc----cCCCcceEEeC------CEEEEEecccccCeEEEeeeecccceEeeeeEE
Confidence 579999999 9999998 5554431 12456688774 46999999999999999999 567788889999
Q ss_pred EEEcCCCc---------eEeeCCCeEEEecC--CCCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCee
Q psy3125 79 NVDDRGRG---------ARLSAGPLLNFAFP--DLLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~~~---------~~v~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~ 141 (163)
.|+...+. ..+..|..+.+.|. ..+.+...|...+. |+.+.. ..+|.|.+++++|+|.
T Consensus 419 ~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e-----dGtL~I~n~t~~DaG~ 493 (1051)
T KOG3513|consen 419 KVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE-----DGTLEISNVTRSDAGK 493 (1051)
T ss_pred EEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC-----CCcEEecccCcccCcE
Confidence 99976221 23445677888886 34567788877765 333332 4459999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.| |..|.+...+.|.|+.
T Consensus 494 YtC~A~N~~G~a~~~~~L~Vkd 515 (1051)
T KOG3513|consen 494 YTCVAENKLGKAESTGNLIVKD 515 (1051)
T ss_pred EEEEEEcccCccceEEEEEEec
Confidence 99999 9999999999999975
No 2
>KOG3513|consensus
Probab=99.83 E-value=6.1e-20 Score=145.54 Aligned_cols=148 Identities=19% Similarity=0.270 Sum_probs=115.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
+.|...+.| +.+.|.| +...+...+|+.+.. +++|.|.+++++|+|.|+|.+ |..++.....+|
T Consensus 446 i~C~~~asP~p~~~W~k---------~~~~~~~~~r~~i~e-----dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L 511 (1051)
T KOG3513|consen 446 IDCKPFASPKPKVSWLK---------GGEKLLQSGRIRILE-----DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNL 511 (1051)
T ss_pred EeeccCCCCcceEEEEc---------CCcccccCceEEECC-----CCcEEecccCcccCcEEEEEEEcccCccceEEEE
Confidence 579999999 9999998 222344578998875 678999999999999999999 667888999999
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC----CCceeEEEEeCCCeEEEecCC-------CCceEEEEecccCcCCCee
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD----LLTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~ 141 (163)
.|.+++ ....+..|..+.+.|.. .+.....|..++.-+.+.... ..+...|+|.+++..|+|.
T Consensus 512 ~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~ 591 (1051)
T KOG3513|consen 512 IVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGK 591 (1051)
T ss_pred EEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCce
Confidence 998763 44456678899999964 456778898877644433211 1122569999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|.|+| ...-+++..+.|.|+|
T Consensus 592 Y~C~aqT~~Ds~s~~A~l~V~g 613 (1051)
T KOG3513|consen 592 YTCVAQTALDSASARADLLVRG 613 (1051)
T ss_pred EEEEEEEeecchhcccceEEec
Confidence 99999 5556888888888876
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.81 E-value=7.2e-19 Score=121.39 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=76.3
Q ss_pred eEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEEEEcCCCceEeeCCCeEEEecCCC-------CceeEEEEeCCCeEE
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDL-------LTTNIYTYTGDARFS 117 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 117 (163)
+.+|.|.+++.+|+|.|.|++.+ .......+.|.|..+.....+..|..+.+.|... +.+.+.|++++..+.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 56899999999999999999954 4455667778887665556677889999999743 357889999876543
Q ss_pred EecC--CCCceEEEEecccCcCCCeeEEEEc
Q psy3125 118 VIHP--QNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 118 ~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.... .......|.|.+++.+|+|.|+|.|
T Consensus 177 ~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a 207 (227)
T PHA02826 177 YTDRIQLRNNNSTLVIKSATHDDSGIYTCNL 207 (227)
T ss_pred CCCCEEEeCCCCEEEECcCCHHhCEEEEEEE
Confidence 1110 0012346999999999999999999
No 4
>KOG4194|consensus
Probab=99.73 E-value=1.5e-16 Score=119.97 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=114.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.++|.| |.|.|.|....... .....|.++..+ +-.+-|.||..+|.|.|+|.+ +..+..+..++|
T Consensus 632 l~CaAtG~P~PeIawqkdggtdFP------AA~eRRl~Vmpe----dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL 701 (873)
T KOG4194|consen 632 LECAATGHPRPEIAWQKDGGTDFP------AARERRLHVMPE----DDVFFITNVKIEDQGIYTCTAQNVAGQISANATL 701 (873)
T ss_pred eeeeccCCCCcceeehhcCCCCCc------hhhhheeeecCC----CCEEEEecccccccceeEEeeeccccceeeceEE
Confidence 679999999 99999984322111 123557776653 335899999999999999999 567888999999
Q ss_pred EEEcCC------CceEeeCCCeEEEecCC--C-CceeEEEEeCCCeEEEec--CCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 79 NVDDRG------RGARLSAGPLLNFAFPD--L-LTTNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 79 ~V~~~~------~~~~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.|.+-| +...|..|....+.|.. . ..+...|++.++-+.+.. +.....--|.+++...+|+|.|+|..
T Consensus 702 ~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~ 781 (873)
T KOG4194|consen 702 TVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMS 781 (873)
T ss_pred EEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEE
Confidence 999764 33456678888888853 2 337889999988777664 44556677999999999999999999
Q ss_pred CCCCCccEEEEEEEe
Q psy3125 147 NTEPKMNMAIMLNVD 161 (163)
Q Consensus 147 ~~~~~~~~~~~L~V~ 161 (163)
++.+.-...+.|.|.
T Consensus 782 ~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 782 NTLGTERIHICLLVY 796 (873)
T ss_pred eeccceeeEEEEEEe
Confidence 887777666666654
No 5
>KOG4221|consensus
Probab=99.70 E-value=3.8e-16 Score=124.72 Aligned_cols=148 Identities=19% Similarity=0.271 Sum_probs=108.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~ 77 (163)
|.|.+.+.+ +.|.|.|.+ .++ ..++|+.++. +..|.|.+++.+|.|.|.|.+... ...+..+.
T Consensus 160 f~c~vn~e~~p~i~w~kn~-~pl--------~~~~r~i~lp-----sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ 225 (1381)
T KOG4221|consen 160 FSCEVNAEPVPTIMWLKND-QPL--------PLDSRVIVLP-----SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAE 225 (1381)
T ss_pred EEEEEcCccCceeEEeccc-ccc--------cCCCcEEEcC-----CCcEEecccccCCCceEEEEEecCCcCCccceeE
Confidence 689999988 889998732 212 2356777765 456999999999999999999542 23456666
Q ss_pred EEEEc------------CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCee
Q psy3125 78 LNVDD------------RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 78 l~V~~------------~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~ 141 (163)
|+|.. .+....+..|..+.++|. ..+.+.+.|.+++..+...... -.....|.|++++..|+|.
T Consensus 226 ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~ 305 (1381)
T KOG4221|consen 226 LTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGK 305 (1381)
T ss_pred EEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCce
Confidence 77662 234456677889999996 4567899999977655443210 0123459999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEec
Q psy3125 142 YECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+|.| |+.-....++.|.|..
T Consensus 306 YtC~Atn~~D~idasaev~V~a 327 (1381)
T KOG4221|consen 306 YTCRATNTNDSIDASAEVTVLA 327 (1381)
T ss_pred EEEEecCCCcccccceEEEEEc
Confidence 99999 8777777778887764
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.65 E-value=3.8e-15 Score=108.53 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=89.8
Q ss_pred CceEE-----ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee
Q psy3125 1 MACTV-----MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN 73 (163)
Q Consensus 1 l~C~~-----~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~ 73 (163)
|.|.+ .|.| +.|.|+|.+.. ..|..... +...|.|.++..+|+|.|+|.+.+ .+...
T Consensus 46 l~C~~~~~~~~g~p~~~i~W~K~g~~------------~~~~~~~~----~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~ 109 (326)
T PHA02785 46 LPCPQINTLSSGYNILDILWEKRGAD------------NDRIIPID----NGSNMLILNPTQSDSGIYICITKNETYCDM 109 (326)
T ss_pred EECCCccccccCCCCceEEEEECCCc------------cceEEEcc----CCceEEEcccCcccCeEEEEEEECCCcceE
Confidence 46876 5778 99999983210 11211111 223588999999999999999954 34455
Q ss_pred EEEEEEEEcCCC--------ceEeeCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCC
Q psy3125 74 MAIMLNVDDRGR--------GARLSAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 74 ~~~~l~V~~~~~--------~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 138 (163)
..+.|+|....+ ...+..|....+.|.. .+.+.+.|+... ..............|.|.+++.+|
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhh
Confidence 667777765421 1234466778888862 345678886543 111000000112469999999999
Q ss_pred CeeEEEEc-CCCCCcc----EEEEEEEe
Q psy3125 139 AGIYECQV-NTEPKMN----MAIMLNVD 161 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~----~~~~L~V~ 161 (163)
+|.|+|.| +..+... ..+.|.|.
T Consensus 189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 189 AGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred CeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 99999999 7666543 34455554
No 7
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.63 E-value=3.3e-15 Score=85.97 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=53.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ....|+.+... ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 l~C~v~G~P~P~i~W~k--~~~~i~------~~~~r~~~~~~-~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 3 LECQISAIPPPKIFWKR--NNEMVQ------YNTDRISLYQD-NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred EEEEEEecCCCeEEEEE--CCEECc------CCCCeEEEEEc-CCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence 689999999 9999998 332221 12357777653 234468999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (75)
T cd05892 74 DV 75 (75)
T ss_pred eC
Confidence 65
No 8
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.63 E-value=5.2e-15 Score=88.96 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=61.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.| +.|.|+|. +..++.++......++|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.+..+..+.|.
T Consensus 17 L~C~v~g~~~~~v~W~k~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~ 94 (95)
T cd05882 17 LKCGVKEHDNSSLQWSNT-AQQTLYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVT 94 (95)
T ss_pred EEEEEeCCCCCeEEEecc-CccEEEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence 689999999 99999984 33455566666667889987653 2457999999999999999999998766666666554
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 v 95 (95)
T cd05882 95 V 95 (95)
T ss_pred C
Confidence 3
No 9
>KOG4194|consensus
Probab=99.61 E-value=1e-14 Score=110.24 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=105.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEE-e---cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCC-C
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILT-T---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEP-K 71 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~-~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~-~ 71 (163)
|.|.+.++. -.+.|.|.+. ++. . +...+....|.....+.......|++.||.-.|.|.|+|.+. ..+ .
T Consensus 523 ftC~a~sssasplsi~WR~dne--vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGSt 600 (873)
T KOG4194|consen 523 FTCNAYSSSASPLSIEWRKDNE--VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGST 600 (873)
T ss_pred EEEEeccCCCCCceeEeeeccc--cCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcc
Confidence 578888754 6888987432 221 0 001111111111111111235579999999999999999994 333 4
Q ss_pred eeEEEEEEEEcC------CCceEeeCCCeEEEecCC--CCceeEEEEeCCCe-EEEecC----CCCceEEEEecccCcCC
Q psy3125 72 MNMAIMLNVDDR------GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR-FSVIHP----QNSDEWNMKIDYAQKRD 138 (163)
Q Consensus 72 ~~~~~~l~V~~~------~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~----~~~~~~~L~i~~v~~~D 138 (163)
.+.++.|+|... |....+..|....+.|.. .+.+.+.|-+.++. |....+ --...-.+.|.+|+.+|
T Consensus 601 ysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD 680 (873)
T KOG4194|consen 601 YSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIED 680 (873)
T ss_pred hhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccc
Confidence 677778888765 455678888889999964 56678888766542 321110 00122348999999999
Q ss_pred CeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 139 AGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 139 ~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+|.|+|.| |..|..+.+++|.|-.
T Consensus 681 ~GiYtC~A~n~AG~isanAtL~V~e 705 (873)
T KOG4194|consen 681 QGIYTCTAQNVAGQISANATLTVLE 705 (873)
T ss_pred cceeEEeeeccccceeeceEEEEec
Confidence 99999999 9999999999999864
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.61 E-value=4.3e-14 Score=103.01 Aligned_cols=134 Identities=18% Similarity=0.266 Sum_probs=84.2
Q ss_pred cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe----eEEEEEEE
Q psy3125 7 GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM----NMAIMLNV 80 (163)
Q Consensus 7 ~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~----~~~~~l~V 80 (163)
+.+ +.|.|.| +..+ .+.|+.... +..|.|.+++.+|+|.|+|.+.+ .+.. ...+.|.|
T Consensus 152 ~~~~~~i~W~k--~~~~---------~~~r~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V 215 (326)
T PHA02785 152 SNVNADIIWSG--HRRL---------RNKRLKQRT-----PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEV 215 (326)
T ss_pred CCCCceEEEcc--CCcc---------CCcceEecC-----CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEE
Confidence 456 8999976 2211 234555432 34799999999999999999943 3322 23445666
Q ss_pred EcC--------CCceEeeCCCeEEEecCCC--Cc---eeEEEEeCCCeE-----------EEecCCC------CceEEEE
Q psy3125 81 DDR--------GRGARLSAGPLLNFAFPDL--LT---TNIYTYTGDARF-----------SVIHPQN------SDEWNMK 130 (163)
Q Consensus 81 ~~~--------~~~~~v~~~~~~~~~~~~~--~~---~~~~~~~~~~~~-----------~~~~~~~------~~~~~L~ 130 (163)
..+ +....+..|..+.+.|... +. ..+.|..++..+ ....... .....|+
T Consensus 216 ~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 295 (326)
T PHA02785 216 RDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLN 295 (326)
T ss_pred eccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEE
Confidence 532 2223445688899999643 11 357888775432 1111110 1135699
Q ss_pred ecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 131 IDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 131 i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
|.+++.+|+|.|+|.| |.. +.+..++
T Consensus 296 I~~V~~~D~G~Y~C~A~n~~-~~~~~~~ 322 (326)
T PHA02785 296 INPVKEEDATTFTCMAFTIP-SISKTVT 322 (326)
T ss_pred ECCcchhcCeeeEEEEEecc-CceEeee
Confidence 9999999999999999 554 5554444
No 11
>KOG4221|consensus
Probab=99.60 E-value=1.3e-14 Score=116.15 Aligned_cols=147 Identities=21% Similarity=0.314 Sum_probs=107.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|+|.+.+.| +.|.|+| ++..+.++. -|+.+.. ..+|.|.+++..|+|.|+|.+ ++.......+.|
T Consensus 257 leCvvs~~p~p~v~Wlr--ng~~i~~ds------~rivl~g-----~~slliS~a~~~dSg~YtC~Atn~~D~idasaev 323 (1381)
T KOG4221|consen 257 LECVVSGVPKPSVKWLR--NGEKISVDS------YRIVLVG-----GSSLLISNATDDDSGKYTCRATNTNDSIDASAEV 323 (1381)
T ss_pred EEEEecCCCCCceEEee--CCeeeeecc------eEEEEec-----ccceEEeccccccCceEEEEecCCCcccccceEE
Confidence 689999999 9999999 544444322 3555553 446999999999999999999 556677788889
Q ss_pred EEEcCCC------ceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 79 NVDDRGR------GARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 79 ~V~~~~~------~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
+|+.++. ......+..+.+.|. ..+.+.+.|++++.+..-.... -.....|+|-.+-..|.|.|+|.+ |.
T Consensus 324 ~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~ 403 (1381)
T KOG4221|consen 324 TVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAEND 403 (1381)
T ss_pred EEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccC
Confidence 9988742 223344677888886 3467899999988755322100 011112899999999999999999 88
Q ss_pred CCCccEEEEEEE
Q psy3125 149 EPKMNMAIMLNV 160 (163)
Q Consensus 149 ~~~~~~~~~L~V 160 (163)
.|.+...+.|.|
T Consensus 404 ~G~a~a~a~l~v 415 (1381)
T KOG4221|consen 404 AGSAQAAAQLEV 415 (1381)
T ss_pred cccccchhhhee
Confidence 899988887754
No 12
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=6.5e-15 Score=84.42 Aligned_cols=66 Identities=26% Similarity=0.439 Sum_probs=51.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| +...+ ..+.|+.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 l~C~~~g~P~p~v~W~k--~~~~l-------~~~~r~~~~~-----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 6 IECKPKAAPKPKFSWSK--GTELL-------VNNSRISIWD-----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred EEEecceeCCCEEEEEe--CCEec-------ccCCCEEEcC-----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence 689999999 9999998 32222 2356777754 347999999999999999999 556677777776
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 72 ~~ 73 (73)
T cd05852 72 SV 73 (73)
T ss_pred EC
Confidence 64
No 13
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.56 E-value=3e-14 Score=82.02 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=51.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ....|+.+... .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 3 l~C~v~G~P~P~v~W~k--~~~~l~------~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 3 LECRVSGVPHPQIFWKK--ENESLT------HNTDRVSMHQD-NCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred EEEEEeEecCCEEEEEE--CCEECC------CCCCeEEEEEc-CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence 689999999 9999998 322221 12357776542 123347999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (75)
T cd05893 74 DV 75 (75)
T ss_pred eC
Confidence 64
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.56 E-value=7.3e-14 Score=84.61 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=58.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|+| ++..+ ..+.|+.+... .....|.|.++.++|+|.|+|.+ |..+.....+.|
T Consensus 20 l~C~~~G~p~p~v~W~k--dg~~l-------~~~~~~~~~~~--~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l 88 (98)
T cd05762 20 LFCKVTGTQPITCTWMK--FRKQI-------QEGEGIKIENT--ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL 88 (98)
T ss_pred EEEEEcccCCCceEEEE--CCEEe-------cCCCcEEEEec--CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence 689999999 9999998 33332 23456666642 24678999999999999999999 567788889999
Q ss_pred EEEcCCC
Q psy3125 79 NVDDRGR 85 (163)
Q Consensus 79 ~V~~~~~ 85 (163)
.|.+.+.
T Consensus 89 ~V~~~P~ 95 (98)
T cd05762 89 TVVDKPD 95 (98)
T ss_pred EEecCCC
Confidence 9988754
No 15
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.54 E-value=9.4e-14 Score=79.87 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.+.|+| ++..+ ..++|+.+.. .....+|.|.++..+|+|.|+|.+ |..+..+..+.|
T Consensus 4 l~c~~~G~P~p~v~W~k--~g~~l-------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 4 LEVPISGRPTPTVTWSK--DGKPL-------KLSGRVQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred EEeeEeeeCCCeEEEEE--CCEEc-------CCCCeEEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 689999999 9999998 32222 2355777664 234778999999999999999999 446666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~V 74 (74)
T cd05748 73 KV 74 (74)
T ss_pred EC
Confidence 54
No 16
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.53 E-value=1.9e-13 Score=81.82 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=62.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|+|.+.+.. ..+.|++.+ ..++.++......++||.+... +++.++|.|.+++.+|+|.|+|++...+..+..+.+.
T Consensus 17 L~C~v~~~~~~~v~w~~~~-~~~i~~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 17 ISCRVKNNDDSVIQLLNPN-RQTIYFRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred EEEEEccCCccEEEEEecC-CcEEEecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 689999998 889999755 3344445556668999998863 3579999999999999999999998888777766655
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 ~ 95 (95)
T cd05881 95 V 95 (95)
T ss_pred C
Confidence 3
No 17
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.52 E-value=6.4e-14 Score=79.92 Aligned_cols=66 Identities=23% Similarity=0.467 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|. ... +.+..++.+.. +..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 4 l~C~~~G~P~p~v~W~k~--g~~-------~~~~~~~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 4 FECEVTGKPTPTVKWVKN--GDM-------VIPSDYFKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred EEEEEEEeCCCEEEEEEC--CeE-------CCCCCCEEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 689999999 99999982 221 22345666553 234888899999999999999 556667777666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 70 ~V 71 (71)
T cd05723 70 II 71 (71)
T ss_pred EC
Confidence 54
No 18
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.52 E-value=1.2e-13 Score=83.23 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=58.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+++.| +.|.|+|.+ +..+..++.....++|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.+..+..+.|.
T Consensus 17 L~C~~~~~p~~~v~W~~~~-~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~ 94 (95)
T cd07701 17 LTCRVDQNDNTSLQWSNPA-QQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLT 94 (95)
T ss_pred EEEEEecCCceEEEEeCCC-CeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEE
Confidence 689999999 999999643 3444444444456789887542 2357899999999999999999997766667777776
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 v 95 (95)
T cd07701 95 V 95 (95)
T ss_pred C
Confidence 4
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=4.9e-14 Score=81.08 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=48.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+ ..+.++.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 7 l~C~~~g~P~p~i~W~k--~g~~~-------~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 7 FLCEAQGYPQPVIAWTK--GGSQL-------SVDRRHLVLS-----SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred EEeECCEecCCEEEEEE--CCEEC-------CCCCCeEEcc-----CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 689999999 9999998 33222 2334554432 347999999999999999999 556667777666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 54
No 20
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.52 E-value=1.8e-13 Score=78.92 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=51.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ....|+.+... ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 L~C~v~G~P~P~v~W~k--~~~~i~------~~~~r~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 3 LECRVSAIPPPQIFWKK--NNEMLT------YNTDRISLYQD-NCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred EEEEEeecCCCeEEEEE--CCEECC------CCCCcEEEEEc-CCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 689999999 9999998 322221 11346666542 234568999999999999999999 556677777766
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~v 75 (75)
T cd05744 74 DV 75 (75)
T ss_pred eC
Confidence 54
No 21
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=1.5e-13 Score=83.30 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=54.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+++..+..+. ...++|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 21 LSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVKG--QHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 96 (98)
T ss_pred EEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEee--cCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEE
Confidence 689999999 999999854433222111 12346777754 234678999999999999999999 556666677766
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 97 ~~ 98 (98)
T cd05870 97 DI 98 (98)
T ss_pred eC
Confidence 54
No 22
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.51 E-value=3.5e-13 Score=80.06 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=57.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccC--CCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.|.| +.+.|+| +..++. ....||.+.... .....+|.|.++..+|+|.|+|.+ |..+.....+
T Consensus 6 l~C~~~g~p~~~i~W~k--~~~~i~------~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 6 MSCTAHGEKPIIVRWEK--EDRIIN------PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred EEEEEECCCCCEEEEee--CCEECC------CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 689999999 9999998 333221 112467665321 122467999999999999999999 5677788888
Q ss_pred EEEEEcCCC
Q psy3125 77 MLNVDDRGR 85 (163)
Q Consensus 77 ~l~V~~~~~ 85 (163)
.|.|.++|.
T Consensus 78 ~L~V~~~P~ 86 (88)
T cd05735 78 QLTVQEPPD 86 (88)
T ss_pred EEEEeCCCC
Confidence 999988754
No 23
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.50 E-value=2.9e-13 Score=80.03 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=51.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| +...+. ..+.|+.+... ....+|.|.++..+|+|.|+|.+ |..+.....+.|
T Consensus 15 l~c~~~G~P~P~v~W~k--~~~~i~------~~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 15 LDVPISGEPAPTVTWSR--GDKAFT------ETEGRVRVESY--KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEeeEeecCCCeEEEEE--CCEECc------cCCCeEEEEEc--CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 689999999 9999998 332221 12347776642 34678999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
+|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 54
No 24
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.50 E-value=1.5e-13 Score=82.05 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=56.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+.. ++.+.........||.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 L~C~~~g~P~p~v~W~k~g~~-~~~~~~~~~~~~~r~~v~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (90)
T cd05726 6 FQCEATGNPQPAIFWQKEGSQ-NLLFSYQPPQSSSRFSVSQ-----TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYL 79 (90)
T ss_pred EEEECCccCCCEEEEEeCCCc-ceeecccCCCCCCeEEECC-----CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 689999999 99999984322 2211111112356777653 346999999999999999999 557778888899
Q ss_pred EEEcC
Q psy3125 79 NVDDR 83 (163)
Q Consensus 79 ~V~~~ 83 (163)
.|...
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 98865
No 25
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.48 E-value=2.5e-13 Score=76.26 Aligned_cols=62 Identities=16% Similarity=0.364 Sum_probs=46.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.+.|+| ++..+. .+ ....+|.|.++..+|+|.|+|.+ |..+..+..+.|
T Consensus 3 l~c~v~g~P~P~v~W~k--dg~~l~---------~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 63 (67)
T cd05863 3 LPVKVAAYPPPEFQWYK--DGKLIS---------GK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL 63 (67)
T ss_pred EEEEEEEeCCCEEEEEE--CCEECc---------cc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence 689999999 9999998 333321 01 12457999999999999999999 555666666666
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
+|.
T Consensus 64 ~l~ 66 (67)
T cd05863 64 ELI 66 (67)
T ss_pred EEE
Confidence 654
No 26
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=2.1e-13 Score=78.21 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=49.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| +... +..+.|+.+.. +.+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 L~C~~~g~P~p~v~W~k--~~~~-------~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 6 IECKPKAAPKPTISWSK--GTEL-------LTNSSRICIWP-----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred EEEeeeEcCCCEEEEEE--CCEE-------cccCCCEEECC-----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 689999999 9999998 3222 22455666543 346999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 72 ~V 73 (73)
T cd04969 72 SV 73 (73)
T ss_pred EC
Confidence 54
No 27
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=3e-13 Score=77.96 Aligned_cols=70 Identities=19% Similarity=0.401 Sum_probs=50.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+..... .....|+.+.. ....|.|.+++.+|+|.|.|.+. ..+..+..+.|
T Consensus 3 l~C~~~G~P~P~v~W~k~~~~~~~------~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 3 LECAATGHPTPQIAWQKDGGTDFP------AARERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred eEeecccccCCEEEEEeCCCccCC------cccccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 689999999 99999984321111 01234555543 23479999999999999999994 46667777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 76
No 28
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.5e-13 Score=77.06 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ....++.+.. +.+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 3 L~C~~~g~P~p~i~W~k--~g~~~-------~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 3 IPCSAQGDPEPTITWNK--DGVQV-------TESGKFHISP-----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred eEecceEeCCCEEEEEE--CCEEC-------CCCCCEEECC-----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 689999999 9999998 32222 2345666543 347999999999999999999 445555555544
No 29
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.47 E-value=1.8e-13 Score=81.70 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=49.4
Q ss_pred CceEEecCC-CcEEEEEec--CCeeEEecceEecCCCeEEEecc-----CCCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKR--DLHILTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+.| |.|.|+|.+ ++..+..+ ..++..+... .......|.|.+++.+|+|.|+|.+ |..+.
T Consensus 6 l~C~v~g~P~P~i~W~k~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 6 FHCKVYSDAQPHIQWLKHVEVNGSKYGPD-----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred EEEEEeCCCCCeEEEEEecccCCceeCCC-----CCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 689999999 999999842 11111101 1122222110 0123457999999999999999999 55677
Q ss_pred eeEEEEEEE
Q psy3125 72 MNMAIMLNV 80 (163)
Q Consensus 72 ~~~~~~l~V 80 (163)
....+.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 777777876
No 30
>KOG4222|consensus
Probab=99.47 E-value=2.4e-13 Score=108.57 Aligned_cols=141 Identities=22% Similarity=0.362 Sum_probs=101.6
Q ss_pred cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEEEEEcC
Q psy3125 7 GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIMLNVDDR 83 (163)
Q Consensus 7 ~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~V~~~ 83 (163)
+.| +.|.|.| ++..+.++ -.+++.+.. .+.|.|.+++.+|+|.|.|.+++. ...+....|+|.++
T Consensus 158 ghpeptvSw~K--dg~pl~~~-----~~~~~~lis-----gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~ 225 (1281)
T KOG4222|consen 158 GHPEPTVSWVK--DGKPLDHY-----DVPIIALIS-----GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK 225 (1281)
T ss_pred CCCCCcceeec--CCCccccc-----cceeEEEec-----CCcEEEeccccCCCceeeeeecccccccccccceeeeccC
Confidence 566 9999998 44444321 123443332 456999999999999999999652 34567778888876
Q ss_pred C------CceEeeCCCeEEEecCC--CCceeEEEEeCCC-----eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 84 G------RGARLSAGPLLNFAFPD--LLTTNIYTYTGDA-----RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 84 ~------~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
+ ....+..|..+.+.|.. .+.+.+.|...+. |+.+.. +..+|.|.+++..|.|.|.|.+ |..
T Consensus 226 P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~v 301 (1281)
T KOG4222|consen 226 PWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLV 301 (1281)
T ss_pred CccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeee----ccccccccccCCCcccceeeeccccc
Confidence 4 34466777778888864 4456677766554 334333 2245999999999999999999 999
Q ss_pred CCccEEEEEEEecC
Q psy3125 150 PKMNMAIMLNVDGK 163 (163)
Q Consensus 150 ~~~~~~~~L~V~~~ 163 (163)
|......+|.|.+.
T Consensus 302 G~l~asa~ltV~ap 315 (1281)
T KOG4222|consen 302 GGLEASATLTVQAP 315 (1281)
T ss_pred cccccccceEEecC
Confidence 99999999999763
No 31
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.47 E-value=6e-13 Score=79.72 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=50.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+ ....++.+.... ....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 L~C~v~G~P~p~v~W~k--~g~~l-------~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 21 LTCTVFGDPDPEVSWLK--NDQAL-------ALSDHYNVKVEQ-GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEEEEecCCCeEEEEE--CCEEC-------ccCCCEEEEEcC-CCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 689999999 9999998 33222 234566665421 23568999999999999999999 546666666555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 91 ~v 92 (92)
T cd05737 91 SV 92 (92)
T ss_pred eC
Confidence 53
No 32
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=3.3e-13 Score=76.52 Aligned_cols=65 Identities=25% Similarity=0.451 Sum_probs=48.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+. . .+.+|+.+.. ..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~~-~---------~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 3 FQCEVGGDPVPTVLWRKEDG-E---------LPKGRAEILD-----DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred EEEECccCCCCEEEEEECCc-c---------CCCCcEEEee-----CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 689999999 9999998321 1 1345666552 347999999999999999999 555666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 68 ~V 69 (69)
T cd05725 68 TV 69 (69)
T ss_pred EC
Confidence 54
No 33
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.46 E-value=4.2e-13 Score=76.48 Aligned_cols=66 Identities=14% Similarity=0.328 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|+| ++..+. .+.++.. ...+|.|.+++.+|+|.|+|.+. ..+.....+.+
T Consensus 3 l~c~v~g~P~p~v~W~k--~g~~l~-------~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 67 (71)
T cd04976 3 LPVKVKAYPPPEIQWYK--NGKLIS-------EKNRTKK------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF 67 (71)
T ss_pred EEeEEEEeCCCEEEEEE--CCEECC-------CCCEEEc------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence 689999999 9999998 333222 2233321 24579999999999999999994 45555666666
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
+|.
T Consensus 68 ~~~ 70 (71)
T cd04976 68 TLV 70 (71)
T ss_pred EEE
Confidence 654
No 34
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.45 E-value=1.7e-12 Score=76.56 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=53.2
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEE
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~ 76 (163)
|.|.+.+.| + .+.|+| ++..+.... .+.++..... .....+|.|.+++.+|+|.|+|.+ +..+..+..+
T Consensus 5 L~C~a~g~P~p~~~v~W~~--~g~~i~~~~----~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 5 LQCHASHDPTMDLTFTWSL--DDFPIDLDK----PNGHYRRMEV-KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred EEEEEecCCCCCeEEEEEE--CCeEccccC----CCCcEEEEEe-cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 689999999 5 579998 333332111 1334432211 123568999999999999999999 5567788888
Q ss_pred EEEEEcC
Q psy3125 77 MLNVDDR 83 (163)
Q Consensus 77 ~l~V~~~ 83 (163)
.|.|..+
T Consensus 78 ~L~V~~~ 84 (85)
T cd05854 78 TLVVRGP 84 (85)
T ss_pred EEEEECC
Confidence 9998865
No 35
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.44 E-value=7.4e-13 Score=76.12 Aligned_cols=68 Identities=24% Similarity=0.491 Sum_probs=48.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.|.| |.|.|+| +...+.. ..+.|+.... +.+|.|.+++.+|+|.|+|.+.+ .+. .+..+.
T Consensus 3 l~C~~~G~P~p~v~W~k--~~~~~~~-----~~~~~~~~~~-----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~ 70 (74)
T cd05738 3 MLCAASGNPDPEITWFK--DFLPVDT-----TSNGRIKQLR-----SGALQIENSEESDQGKYECVATNSAGTRYSAPAN 70 (74)
T ss_pred EEEEEeEecCCEEEEEE--CCEECcc-----CCCCCEEEcC-----CcEEEECCCChhhCEEEEEEEECCCCceEcccEE
Confidence 689999999 9999998 3222210 1345666542 34699999999999999999954 443 456666
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 71 l~v 73 (74)
T cd05738 71 LYV 73 (74)
T ss_pred EEE
Confidence 665
No 36
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.44 E-value=9.3e-13 Score=76.48 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=47.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.|.| |.|.|+|. ... +...+|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.
T Consensus 6 l~C~~~g~P~p~v~W~~~--~~~-------~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 6 FTCVATGVPTPIINWRLN--WGH-------VPDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred EEEEEEEecCCEEEEEEC--CeE-------CCCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 689999999 99999872 211 12345676654 234678999999999999999999 44554444333
No 37
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.44 E-value=6.2e-13 Score=75.81 Aligned_cols=66 Identities=23% Similarity=0.423 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+.. +. ..+..... ...+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 3 L~C~~~G~P~P~v~W~k~~~~-~~---------~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 3 LECIAEGLPTPEVHWDRIDGP-LS---------PNRTKKLN----NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred EEEEeeEecCCeEEEEECCcC-CC---------CCceeEEc----CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 689999999 99999984321 11 11222221 3567999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 69 ~V 70 (71)
T cd05876 69 TV 70 (71)
T ss_pred EE
Confidence 65
No 38
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.43 E-value=1.2e-12 Score=76.78 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=55.3
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+.+ +.+.|+| ++..+.+. ....||..... .....+|.|.+++.+|+|.|+|.+. .....+..+
T Consensus 5 l~C~v~~d~~l~~~~~W~~--dg~~i~~~----~~~~~~~~~~~-~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a 77 (85)
T cd05853 5 LPCQVSHDHSLDIVFTWSF--NGHLIDFQ----KDGDHFERVGG-QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA 77 (85)
T ss_pred EEEEeccCCCCCcEEEEEE--CCEECccc----CCCccEEEecc-CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence 689998755 8899998 54444321 12336665421 1234579999999999999999994 466788888
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|..+|
T Consensus 78 ~L~V~~pP 85 (85)
T cd05853 78 DLIVRGPP 85 (85)
T ss_pred EEEEecCC
Confidence 99998764
No 39
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.43 E-value=1.9e-12 Score=74.98 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=47.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCe--eEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM--NMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~--~~~~ 76 (163)
|.|.+.|.| |.|.|+| ++..+.. ...++.+.. ...+|.|.+++.+|+|.|+|.+ |..+.. +..+
T Consensus 3 L~C~~~g~P~p~v~W~k--~g~~l~~------~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 70 (77)
T cd05760 3 LRCHIDGHPRPTYQWFR--DGTPLSD------GQGNYSVSS----KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF 70 (77)
T ss_pred EEEEeeecCCCcEEEEE--CCEECCC------CCccEEEeC----CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence 689999999 9999998 3332211 123444432 2347999999999999999999 444544 3455
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 71 ~l~v~ 75 (77)
T cd05760 71 TLSII 75 (77)
T ss_pred EEEEe
Confidence 66654
No 40
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.42 E-value=2.1e-12 Score=77.86 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=51.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCCeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~~~~~~ 76 (163)
|.|.+.|.| +.|.|+|.++..+.. .+.|+.+... +....+|.|.+++.+|+|.|+|.+.+ .+.....+
T Consensus 20 l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 20 FLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV 91 (96)
T ss_pred EEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEeC-CCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence 689999998 599999743332221 1346665432 22357899999999999999999954 36667777
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 92 ~l~v 95 (96)
T cd05865 92 NVKI 95 (96)
T ss_pred EEEE
Confidence 7765
No 41
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.42 E-value=2.2e-12 Score=75.31 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEE--ecc---CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCee
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSV--IHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 73 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~--~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~ 73 (163)
|+|.+.|.| |.|.|+| ++..+. .+.+... ... ......+|.|.+++.+|+|.|+|.| |..+..+
T Consensus 3 i~~~v~G~P~P~v~W~k--~g~~i~-------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 3 IPFTVRGNPKPTLTWYH--NGAVLN-------ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEeEeeCCCcEEEEE--CCEECc-------CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 589999999 9999998 443332 1222211 110 1123667999999999999999999 5455555
Q ss_pred EEEEE
Q psy3125 74 MAIML 78 (163)
Q Consensus 74 ~~~~l 78 (163)
..++|
T Consensus 74 ~~~~~ 78 (81)
T cd04971 74 KSISA 78 (81)
T ss_pred eEEEe
Confidence 55444
No 42
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.42 E-value=1.1e-12 Score=74.37 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=45.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|+|.+.|.| |.|.|+| ++..+. .+.++ . ...+|.|.++..+|+|.|+|.+ |..+......++
T Consensus 3 ~~c~v~G~P~P~v~W~k--~g~~l~-------~~~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~ 66 (70)
T cd05864 3 IPVKYYGYPPPEVKWYK--NGQLIV-------LNHTF--K-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF 66 (70)
T ss_pred EEeEEEEeCCCEEEEEE--CCEECC-------CCCEE--c-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence 689999999 9999998 333322 12222 1 1346999999999999999999 555555555555
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.+.
T Consensus 67 ~l~ 69 (70)
T cd05864 67 QLV 69 (70)
T ss_pred EEE
Confidence 543
No 43
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=1.5e-12 Score=75.17 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=49.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+.... ...++.+. +.+|.|.+++.+|+|.|+|.+ |..+.....++|
T Consensus 6 l~C~~~G~P~p~i~W~k--~g~~i~~~~----~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 6 LDCQVEGIPTPNITWSI--NGAPIEGTD----PDPRRHVS------SGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred EEEEeeEeCCCeEEEEE--CCEECCCCC----CCceEEee------CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 689999999 9999998 333332110 12344432 346999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 76
No 44
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.42 E-value=1.8e-12 Score=77.18 Aligned_cols=69 Identities=23% Similarity=0.489 Sum_probs=53.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|++ ++..+ ..+.++.+... ....+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 20 l~c~~~~~p~~~v~W~~--~~~~l-------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 20 LECEVSGNPPPTVTWYK--NGRPL-------TSSQRYQIESD--GGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp EEEEEEESSSSEEEEEE--TTEEE-------ESSSSEEEEEE--TTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCcccccc--cccce-------eeeeeeeeecc--cceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 689999999 9999998 33333 34677777763 368999999999999999999994 45555666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 89 ~V 90 (90)
T PF07679_consen 89 TV 90 (90)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 45
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.42 E-value=2.1e-12 Score=74.73 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=46.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEE--ec-cCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSV--IH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~--~~-~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|+|.+.|.| |.|.|+| ++..+. .+.+... .. .......+|.|.++..+|+|.|+|.| |..+.....
T Consensus 3 i~~~v~G~P~Pti~W~k--ng~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFH--EGAILN-------ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEE--CCEECC-------CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 579999999 9999998 444332 2233211 11 11123568999999999999999999 445555555
Q ss_pred EEE
Q psy3125 76 IML 78 (163)
Q Consensus 76 ~~l 78 (163)
+.+
T Consensus 74 ~~~ 76 (79)
T cd05855 74 VSA 76 (79)
T ss_pred EEe
Confidence 443
No 46
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.41 E-value=1.9e-12 Score=78.71 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=50.1
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEecc---CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+++ .| |.|.|+| ++..+. .+.+..+... ......+|.|..+..+|+|.|+|.| |..+..+.
T Consensus 23 L~c~v~g~~P~p~v~W~K--dg~~i~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 23 LVVEVEAYPPPPHINWTY--DNRTLT-------NKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSL 93 (101)
T ss_pred EEEEEEecCCCCccEEEe--CCeeCC-------CCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEE
Confidence 6899999 88 9999999 443332 1222222211 0112467999999999999999999 55667777
Q ss_pred EEEEEEE
Q psy3125 75 AIMLNVD 81 (163)
Q Consensus 75 ~~~l~V~ 81 (163)
.+.|.|.
T Consensus 94 t~~L~V~ 100 (101)
T cd04975 94 TFELYVN 100 (101)
T ss_pred EEEEEEE
Confidence 7777775
No 47
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.41 E-value=2.4e-12 Score=74.33 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=50.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| +...+..+ ...++.+.. +...|.|.+++.+|.|.|+|.+ +..+.....+.|
T Consensus 3 L~C~v~g~P~p~v~W~k--~~~~l~~~-----~~~~~~~~~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 3 LRCHAEGIPLPRLTWLK--NGMDITPK-----LSKQLTLIA----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred eEeEeeecCCCEEEEEE--CCEECCCC-----CCccEEEeC----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 689999999 9999998 22222111 123444432 2347999999999999999999 446666777777
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|.+
T Consensus 72 ~V~~ 75 (76)
T cd05736 72 FVED 75 (76)
T ss_pred EEEc
Confidence 7753
No 48
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.41 E-value=2.4e-12 Score=77.90 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=52.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|. ...+..... ...+|+.+.. .....+|.|.+++.+|+|.|+|.+ |..+..+..++|
T Consensus 22 l~C~~~G~P~P~v~W~~~--~~~~~~~~~--~~~~~~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 22 LTCEASGDPIPSITWRTS--TRNISSEEK--TLDGHIVVRS--HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred EEEEeeEeCCCEEEEEEC--CccccCCcc--ccCccEEEEc--CccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence 689999999 99999983 222211111 1245665553 233568999999999999999999 556777777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 96 ~v 97 (97)
T cd05869 96 EV 97 (97)
T ss_pred EC
Confidence 65
No 49
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.40 E-value=3.4e-12 Score=76.87 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 79 (163)
|.|.+.+.+ +.+.|++.+ +.++..+......++||.+... ....++|.|.+++.+|+|.|.|.+.........+.|.
T Consensus 17 L~C~~~~~~~~~v~W~~p~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~ 94 (95)
T cd05717 17 LKCRVKNNDNSSLQWSNPN-QQTLYFNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVT 94 (95)
T ss_pred EEEEECCCCCceEEEeCCC-CcEEEeccccccccCcEEEEcC-CCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence 689999988 999998643 3333334333334679888542 3457889999999999999999996654445555555
Q ss_pred E
Q psy3125 80 V 80 (163)
Q Consensus 80 V 80 (163)
|
T Consensus 95 v 95 (95)
T cd05717 95 V 95 (95)
T ss_pred C
Confidence 4
No 50
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.40 E-value=1.3e-12 Score=77.64 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=47.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+. .+ ....++.+ .+..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 l~C~~~G~P~P~v~W~k~~~--~~-------~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 21 LECFALGNPVPVIRWRKILE--PM-------PATAEISM------SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred EEEEecccCCCEEEEEECCc--CC-------CCCCEEec------CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 689999999 9999998321 11 11223321 1347999999999999999999 556667777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 86 ~V 87 (88)
T cd05851 86 YV 87 (88)
T ss_pred EE
Confidence 66
No 51
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.40 E-value=1.8e-12 Score=75.48 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=48.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~~ 77 (163)
|.|.+.|.| |.|.|+|.+...... .......++|+.+.. +.+|.|.+++.+|+|.|.|.+.+ .+. .+..+.
T Consensus 3 l~C~~~G~P~P~v~W~~~~~~~~~~-~~~~~~~~~r~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 3 LNCSAEGYPPPTIVWKHSKGRGHPQ-HTHTCCLAGRIQLLS-----NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred eEeeCeEeCCCEEEEEECCCccccc-cccccccCCCEEEec-----CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 689999999 999999843321110 000011345666543 46799999999999999999944 333 355555
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 543
No 52
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.40 E-value=2.2e-12 Score=78.44 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=49.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEecc----CCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.|.| |.+.|+| ++..+..+ .+...... ......+|.|.+++.+|+|.|+|.+ |..+..+.
T Consensus 23 l~~~v~g~P~P~v~W~k--dg~~l~~~-------~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 23 FVVEVEAYPPPQIRWLK--DNRTLIEN-------LTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EEEEEEEeCCCceEEEE--CCEECcCC-------cceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 689999999 9999998 43333211 11111110 0112457999999999999999999 45566677
Q ss_pred EEEEEEE
Q psy3125 75 AIMLNVD 81 (163)
Q Consensus 75 ~~~l~V~ 81 (163)
.+.|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 7777764
No 53
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.39 E-value=3.6e-12 Score=76.89 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=52.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+ ..+.... ...++|+.+.. .....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 21 l~C~~~g~p~p~v~W~~~~--~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 21 LTCEAEGDPIPEITWRRAT--RNFSEGD--KSLDGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred EEEEEeEcCCCcEEEEECC--cccCCCC--ccccceEEEeC--CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 689999999 999999832 2221111 11245666553 234678999999999999999999 556666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 95 ~v 96 (96)
T cd05732 95 EV 96 (96)
T ss_pred eC
Confidence 54
No 54
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.39 E-value=4.3e-12 Score=76.00 Aligned_cols=67 Identities=28% Similarity=0.463 Sum_probs=49.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+| ++..+ ..+.|+.+.. ..+..+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 23 L~C~~~g~P~p~v~W~k--~g~~l-------~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 23 FSCDVDGEPAPTVTWMR--EGQII-------VSSQRHQITS--TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEeecCCCEEEEEE--CCEEC-------CCCCcEEEEE--cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 689999999 9999998 32222 2345777664 234688999999999999999999 445555554443
No 55
>KOG4222|consensus
Probab=99.38 E-value=5.4e-12 Score=101.05 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=105.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| ++|.|.|.+.. .+.+||.+.. ++.+|.|.+++..|.|+|.|.+ +..+.......|
T Consensus 245 f~c~v~GdP~P~Vrwkk~~~~----------~P~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~l 310 (1281)
T KOG4222|consen 245 FDCRVGGDPQPTVRWKKDDPS----------LPRSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATL 310 (1281)
T ss_pred cccccCCCCCCceeeeccCCC----------CCccceeeee----ccccccccccCCCcccceeeeccccccccccccce
Confidence 689999999 99999873322 2467898886 2578999999999999999999 667788888899
Q ss_pred EEEcCCCc------eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-CCC--------CceEEEEecccCcCCCee
Q psy3125 79 NVDDRGRG------ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQN--------SDEWNMKIDYAQKRDAGI 141 (163)
Q Consensus 79 ~V~~~~~~------~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~L~i~~v~~~D~G~ 141 (163)
+|..++.- ..+..|..+.+.|.. .+.+.+.|...+....+.. ... ....+|+|.+++..|.|.
T Consensus 311 tV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~ 390 (1281)
T KOG4222|consen 311 TVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGY 390 (1281)
T ss_pred EEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccce
Confidence 99987522 234456678888863 4556777776655332211 000 112369999999999999
Q ss_pred EEEEc-CCCCCccEEEEEEEe
Q psy3125 142 YECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 142 Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
|.|+. +..+......+|.|.
T Consensus 391 Yvcq~~~~~~ss~~~a~~~qt 411 (1281)
T KOG4222|consen 391 YVCQTQTSAGSSLTKAYLEQT 411 (1281)
T ss_pred EeecccccccccccceeEEEE
Confidence 99997 555555555555543
No 56
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=2.7e-12 Score=75.77 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=51.8
Q ss_pred CceEEecCC-C--cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG-R--PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+.| + .+.|+| ++..+.... .+.++..... .....+|.|.+++.+|+|.|+|.+. ..+..+..+
T Consensus 5 L~C~~~g~P~p~i~~~W~~--~g~~i~~~~----~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 77 (85)
T cd04970 5 LQCHASHDPTLDLTFTWSF--NGVPIDFDK----DGGHYRRVGG-KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77 (85)
T ss_pred EEEEEecCCCCCeEEEEEE--CCeEeeccC----CCccEEEEec-ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence 689999999 6 568998 333332111 1223322211 1235689999999999999999994 456677888
Q ss_pred EEEEEcCC
Q psy3125 77 MLNVDDRG 84 (163)
Q Consensus 77 ~l~V~~~~ 84 (163)
.|.|..+|
T Consensus 78 ~l~V~~pP 85 (85)
T cd04970 78 DLIVRGPP 85 (85)
T ss_pred EEEEECCC
Confidence 88888753
No 57
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.38 E-value=5.4e-12 Score=75.54 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=49.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.+.| +.+.|+|.+ ..+..++++.+... .....+|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 21 L~C~v~g~P~p~i~W~k~~---------~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 21 LTCTVFGNPDPEVIWFKND---------QDIELSEHYSVKLE-QGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred EEEEEEEeCCCeEEEEECC---------EECCCCCCEEEEEc-CCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 689999999 999999832 12223456655432 223468999999999999999999 445555555555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
+|
T Consensus 91 ~~ 92 (92)
T cd05891 91 SV 92 (92)
T ss_pred EC
Confidence 43
No 58
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.37 E-value=4.4e-12 Score=75.65 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred CceEEecCC-CcEEEEEec--CCeeEEecceEecCCCeEEEeccC-----CCCeEEEEEcccCcCCCeeEEEEe-eCCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKR--DLHILTTNIYTYTGDARFSVIHPQ-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPK 71 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~--~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~ 71 (163)
|.|.+.+.| |.|.|+|.+ ++..+..++ .++..+.... .....+|.|.+++.+|+|.|+|.+ |..+.
T Consensus 6 L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 6 FVCKVYSDAQPHIQWLKHVEKNGSKYGPDG-----LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred EEEEEecCCCCEEEEEEecccCCcEeCCCC-----CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 689999999 999999842 111111110 1112221110 112367999999999999999999 66677
Q ss_pred eeEEEEEEE
Q psy3125 72 MNMAIMLNV 80 (163)
Q Consensus 72 ~~~~~~l~V 80 (163)
....+.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 777778876
No 59
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.36 E-value=8.8e-12 Score=74.34 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=48.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+. ...+..... .....+|.|.++..+|.|.|+|.+ |..+.....+.|
T Consensus 20 l~C~~~G~P~p~v~W~~--~g~~~~-------~~~~~~~~~--~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 20 IRCTAEGSPLPKVEWII--AGLIVI-------QTRTDTLET--TVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred EEEEEEEcCCCeEEEEE--CCEEcc-------CCccEEEEe--cCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 689999999 9999998 332221 111211211 123678999999999999999999 556666676666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 54
No 60
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.36 E-value=4.3e-12 Score=72.22 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=39.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.+.|+| ++..+.. ...++... ..+|.|.+++.+|+|.|+|.+.+
T Consensus 3 l~c~v~g~P~P~v~W~k--dg~~l~~------~~~~~~~~------~~~L~I~~v~~~D~G~YtC~a~~ 57 (72)
T cd07702 3 LTPKVKAFPAPEVIWLK--DGLPAAE------KCSRYHVD------GYSLVIKDVTEEDAGIYTILLGI 57 (72)
T ss_pred EEeeEEEcCCCeEEEEE--CCEECCC------CCcEEEeC------CCEEEECcCCHHHCEEEEEEEEc
Confidence 689999999 9999998 3322211 11344322 34799999999999999999954
No 61
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.35 E-value=8.2e-12 Score=75.20 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=51.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+.. ...++.+.. ....|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 23 L~C~~~g~P~p~v~W~k--~g~~~~~------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 23 LACDADGFPEPTMTWTK--DGEPIES------GEEKYSFNE----DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEEeccEeCCCEEEEEE--CCEECcC------CCCEEEEeC----CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 689999999 9999998 3332221 124555432 2346999999999999999999 556677788888
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 8764
No 62
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.35 E-value=1e-11 Score=74.16 Aligned_cols=70 Identities=24% Similarity=0.495 Sum_probs=49.2
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l 78 (163)
|.|.+.|.|..|.|+|.++..+ ....|+.+.. .....+|.|.++..+|+|.|+|.+.+ .+.. ...+.|
T Consensus 20 l~C~~~G~P~~v~W~k~~g~~~--------~~~~r~~~~~--~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l 89 (92)
T cd05866 20 FTCTAIGEPESIDWYNPQGEKI--------VSSQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL 89 (92)
T ss_pred EEEEEEEeCCeEEEEeCCCeEe--------cCCCCEEEEe--CCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 6899999998899997433222 2345777653 23456899999999999999999954 4332 445555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 90 ~~ 91 (92)
T cd05866 90 EI 91 (92)
T ss_pred EE
Confidence 44
No 63
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.35 E-value=4e-12 Score=73.43 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=48.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+| ++..+.... .+.++. . +...|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 l~C~a~G~P~P~i~W~k--~g~~i~~~~----~~~~~~-~-----~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd05868 6 LICRANGNPKPSISWLT--NGVPIEIAP----TDPSRK-V-----DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFV 73 (76)
T ss_pred EEEEeeEeCCCeEEEEE--CCEEccccC----CCceEE-e-----cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEE
Confidence 689999999 9999998 333332110 011111 1 1236899999999999999999 567778888888
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 74 ~v~ 76 (76)
T cd05868 74 NVL 76 (76)
T ss_pred EeC
Confidence 773
No 64
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.35 E-value=4.9e-12 Score=71.98 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=46.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|.+ . .+. ..+.... ....+|.|.+++.+|+|.|+|.+ |..+..+..+.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~-~-~~~--------~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 3 LECIAEGLPTPEISWIKIG-G-ELP--------ADRTKFE----NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred EEEEeeEecCCeEEEEECC-e-ECC--------CCceeEe----cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 689999999 999999832 1 111 1222222 12457999999999999999999 555666666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 69 ~V 70 (71)
T cd05731 69 TV 70 (71)
T ss_pred EE
Confidence 65
No 65
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.35 E-value=5e-12 Score=74.62 Aligned_cols=65 Identities=22% Similarity=0.436 Sum_probs=47.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.+.|+| ++..+ ..+.++... +..|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 19 l~C~~~g~p~p~v~W~k--~g~~~-------~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 19 WECKASGNPRPAYRWLK--NGQPL-------ASENRIEVE------AGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred EEEEeeEeCCCEEEEEE--CCEEC-------CCCCeEEEe------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 689999999 9999998 32222 234455543 236999999999999999999 445566666666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~V 85 (85)
T cd05728 84 AV 85 (85)
T ss_pred EC
Confidence 54
No 66
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.33 E-value=2.3e-11 Score=75.12 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=54.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCC--CCeEEEEEcccC-cCCCeeEEEEe-eCCCCeeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQN--SDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~i~~v~-~~D~G~Y~C~~-~~~~~~~~~ 75 (163)
|.|.+.|.| +.+.|+| ++..+.. .++|+.+..... ....+|.|.++. .+|.|.|+|.| |..+.....
T Consensus 28 L~C~a~G~P~p~i~W~k--~g~~l~~------~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 28 LVCQAQGVPRVQFRWAK--NGVPLDL------GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred EEEECcccCCCEEEEEE--CCEECCC------CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 689999999 9999998 3333321 234665442211 224679999997 69999999999 567777888
Q ss_pred EEEEEEcCC
Q psy3125 76 IMLNVDDRG 84 (163)
Q Consensus 76 ~~l~V~~~~ 84 (163)
+.|.|..+|
T Consensus 100 i~L~~~~~p 108 (109)
T cd05773 100 IQLVSTSRP 108 (109)
T ss_pred EEEEecCCC
Confidence 888887664
No 67
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.32 E-value=7.1e-12 Score=72.27 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=47.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|++ ++..+.... ...... .....|.|.+++.+|+|.|+|.+ |..+.....+.|
T Consensus 6 l~C~~~g~P~p~i~W~~--~g~~~~~~~------~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd04978 6 LDCEAEGIPQPTITWRL--NGVPIEELP------PDPRRR----VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFV 73 (76)
T ss_pred EEEEceeeCCCEEEEEE--CCEECCCCC------CcceEE----ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEE
Confidence 689999999 9999997 332222111 110111 12457999999999999999999 456677777777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 74 ~V 75 (76)
T cd04978 74 HV 75 (76)
T ss_pred EE
Confidence 76
No 68
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.1e-11 Score=71.12 Aligned_cols=67 Identities=15% Similarity=0.391 Sum_probs=47.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|++.++. ++ ....++.... +.+|.|.++..+|+|.|.|.+. ..+..+..+.|
T Consensus 6 l~C~~~g~P~p~v~W~~~~~~-~~-------~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 6 LRCKARGDPEPAIHWISPDGK-LI-------SNSSRTLVYD-----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred EEEEccCcCCCEEEEEeCCCE-Ee-------cCCCeEEEec-----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 689999999 99999974332 22 2234444432 3469999999999999999994 45555666555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 53
No 69
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.32 E-value=1.4e-11 Score=72.54 Aligned_cols=70 Identities=20% Similarity=0.439 Sum_probs=48.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+| ++..+..+.. ..++... ...++|.|.++..+|+|.|+|.+ |..+.....+.|
T Consensus 14 L~C~~~g~P~p~i~W~k--~g~~l~~~~~----~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 14 FRCPAAGNPTPTMRWLK--NGKEFKQEHR----IGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEEEcCCCCCCEEEEEE--CCEECCCCCc----eeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 689999999 9999998 3332221110 0112222 23678999999999999999999 556677777666
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 54
No 70
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.32 E-value=1.6e-11 Score=73.47 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=48.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l 78 (163)
|.|.+.|.|+.|.|++.++..+. ..+++.+... .....+|.|.+++.+|+|.|+|.+.+. ......+.|
T Consensus 20 l~C~~~G~p~~i~W~~~~~~~~~--------~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l 90 (92)
T cd04977 20 FLCQVIGEPKDISWFSPNGEKLV--------TQQQISVVQN-DDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL 90 (92)
T ss_pred EEEEeEeeCCeEEEECCCCCEec--------cCCCEEEEeC-CCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEE
Confidence 68999999988999974433222 2234444331 234678999999999999999999553 334555555
Q ss_pred E
Q psy3125 79 N 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 91 ~ 91 (92)
T cd04977 91 K 91 (92)
T ss_pred E
Confidence 4
No 71
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.32 E-value=1.1e-11 Score=73.65 Aligned_cols=78 Identities=17% Similarity=0.058 Sum_probs=57.9
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+....+.......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 335567788999999964 456789999876533211101112236999999999999999999 99999999999988
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
+
T Consensus 88 ~ 88 (88)
T cd05851 88 Q 88 (88)
T ss_pred C
Confidence 5
No 72
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.31 E-value=3.9e-11 Score=72.63 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+....+..|..+.+.|. ..+.+.+.|++++..+. +.. ....+.|.|.++.++|+|.|+|.| |..|...
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~--~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN--TENSSKLTITEGQQEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe--cCCeeEEEECCCChhhCEEEEEEEEcCCCcee
Confidence 345567888999999996 44567899988765442 222 133567999999999999999999 9999999
Q ss_pred EEEEEEEecC
Q psy3125 154 MAIMLNVDGK 163 (163)
Q Consensus 154 ~~~~L~V~~~ 163 (163)
.++.|.|.++
T Consensus 84 ~~~~l~V~~~ 93 (98)
T cd05762 84 AQVNLTVVDK 93 (98)
T ss_pred EEEEEEEecC
Confidence 9999999875
No 73
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.31 E-value=1.6e-11 Score=72.84 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=46.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| +.|.|+|.+.. +. ...++.. .+.+|.|.+++.+|+|.|.|.+ |..+.....+.|
T Consensus 21 l~C~~~g~P~p~v~W~k~~~~-~~--------~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 21 LECFALGNPVPQIKWRKVDGS-MP--------SSAEISM------SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred EEEEeeEeCCCEEEEEECCCc-CC--------CccEEEE------eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 689999999 99999983321 11 1122221 2457999999999999999999 556666677777
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 86 ~V 87 (88)
T cd04968 86 YV 87 (88)
T ss_pred EE
Confidence 65
No 74
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=1.2e-11 Score=72.11 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=47.4
Q ss_pred CceEEecCC-CcEEEEEecC-CeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRD-LHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~ 77 (163)
|.|.+.+.| +.|.|+|... ...+..... ....++... +..+|.|.+++.+|+|.|+|.+ |..+.....+.
T Consensus 6 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 6 FHCDVTGRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred EEeeccccCCCcEEEEecCCCCcceeecCC--cccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 689999999 9999998522 111100000 001222222 2467999999999999999999 54666666666
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 654
No 75
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.28 E-value=1.6e-11 Score=71.68 Aligned_cols=66 Identities=18% Similarity=0.489 Sum_probs=44.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+|.+. .+. ....... .....+|.|.+++.+|+|.|+|.+. ..+.....+.|
T Consensus 14 L~C~~~g~p~p~i~W~k~~~--~~~-------~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 14 LKCVASGNPRPDITWLKDNK--PLT-------PTEIGES----RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred EEEEeeEeCCCcEEEEECCc--CCc-------CCcccee----cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 689999999 9999998322 111 1111111 1235789999999999999999994 45555555555
Q ss_pred E
Q psy3125 79 N 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 4
No 76
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.27 E-value=2.2e-11 Score=70.79 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=44.7
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLN 79 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~ 79 (163)
|.|.+.+.++.|.|+| ++..+ ..+.|+.+.. .+|.|.+++.+|+|.|+|.+.+ .+.....+.|.
T Consensus 14 l~C~~~~~~~~v~W~k--~g~~l-------~~~~~~~~~~------~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 14 LRCRLRDDVQSINWTK--DGVQL-------GENNRTRITG------EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EEEEecCCCceEEEee--CCcCC-------CCCceEEEeC------CEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 6799999778899998 33222 2345665542 2699999999999999999944 44444444444
No 77
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.24 E-value=6.8e-11 Score=70.58 Aligned_cols=66 Identities=20% Similarity=0.472 Sum_probs=47.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC-CeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP-KMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~-~~~~~~~l 78 (163)
|.|.+.+.++.|.|+| ++..+ ...|+.+.. ...+|.|.+++++|+|.|+|.+.+ .+ ..+..+.|
T Consensus 23 l~C~a~g~~p~i~W~k--ng~~l--------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 23 LTCEAEGQATYIWWVN--NGSLL--------VPPRLQLSN----DNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred EEEEeCCCCCEEEEEE--CCEEC--------CCCCEEEeC----CCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 6899998888999998 33222 134554442 245799999999999999999944 44 34566667
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 66
No 78
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=99.24 E-value=1.9e-10 Score=69.05 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=56.2
Q ss_pred CceEEecCC--CcEEEEEecCC---eeEEe---cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---HILTT---NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~~~~~---~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|...... .+|.|.|.+++ .+..+ .+..+.. .+|..+.... ..+.+|.|.|++.+|+|.|+|.+.+.|
T Consensus 5 L~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~-~~d~sI~i~nvt~~D~G~Y~C~~~t~P 83 (96)
T cd05889 5 LECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST-REDMSLSFNNATEEDVGLYCCSLVTYP 83 (96)
T ss_pred EEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC-CCccEEEEcCCCcccCEEEEEEEEeCC
Confidence 678887654 89999986431 22221 1222222 2577776432 368899999999999999999999888
Q ss_pred CeeEEEEEEEEc
Q psy3125 71 KMNMAIMLNVDD 82 (163)
Q Consensus 71 ~~~~~~~l~V~~ 82 (163)
..+....+.|..
T Consensus 84 ~g~~~~~i~~~~ 95 (96)
T cd05889 84 QGSWEKVIEVVQ 95 (96)
T ss_pred CCCeEEEEEEEc
Confidence 887777777653
No 79
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.24 E-value=9.2e-11 Score=70.20 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=58.5
Q ss_pred CCCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEE------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc
Q psy3125 83 RGRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFS------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~ 153 (163)
.++...+..|..+.+.|. ..+.+.+.|++++..+. +... ......|.|.+++.+|+|.|+|.| |..|..+
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVE-QGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEc-CCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 345567888999999996 34567889998865432 2211 123457999999999999999999 9999999
Q ss_pred EEEEEEE
Q psy3125 154 MAIMLNV 160 (163)
Q Consensus 154 ~~~~L~V 160 (163)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 9988876
No 80
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.23 E-value=6e-11 Score=68.16 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=43.0
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNM 74 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~ 74 (163)
|.|.+.+ .| +.+.|+| ++..+..... ...+.+.. .....+|.|.+++.+|+|.|+|.+. ..+....
T Consensus 3 l~C~~~g~~P~p~~~W~k--~g~~l~~~~~----~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 3 LKCEATSEYPSLRFKWFK--DGKELNRKNK----PRNIKIRN--KKKNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred EEEEccCCCCCceEEEEc--CCeeccccCC----cceEEEEe--cCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 6899999 88 9999998 3322221110 01122222 2346789999999999999999994 4444443
No 81
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.23 E-value=1.3e-10 Score=68.60 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=56.0
Q ss_pred eEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 87 ARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 87 ~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+..|..+.+.|. ..+.+.+.|++++..+... .........|.|+++.++|+|.|+|.| |..|..+..+.|
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 45677888888886 3567888998876533211 011123567999999999999999999 999999999988
Q ss_pred EE
Q psy3125 159 NV 160 (163)
Q Consensus 159 ~V 160 (163)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 76
No 82
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.23 E-value=6.5e-11 Score=66.99 Aligned_cols=61 Identities=16% Similarity=0.349 Sum_probs=40.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe-eCCCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~~~~~~~~~~~l 78 (163)
|.|.+.|.| |.|.|+|. ...+ ....++.. ....|.|.++. |+|.|+|.+ |..+.....+.|
T Consensus 6 L~C~a~G~P~P~v~W~k~--g~~l-------~~~~~~~~------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 6 LTCVAVGAPMPYVKWMKG--GEEL-------TKEDEMPV------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred EEEEeeecCCCEEEEEEC--CEEC-------CCccceec------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 689999999 99999982 2222 12223321 13368999974 899999999 555555555444
No 83
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.22 E-value=6.6e-11 Score=70.22 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=57.4
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++.+...............|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 345667788889999964 345678898876533211111112356999999999999999999 99999999999988
Q ss_pred e
Q psy3125 161 D 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 88 ~ 88 (88)
T cd04968 88 Q 88 (88)
T ss_pred C
Confidence 4
No 84
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.21 E-value=2.5e-10 Score=69.36 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=52.5
Q ss_pred CceEEecCC----CcEEEEEecCC----ee--EEe--cceEecC-CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL----HI--LTT--NIYTYTG-DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~----~~--~~~--~~~~~~~-~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.....+ ..|.|+|...+ .+ +.. +...+.. .+|..+......++.+|.|.+++.+|+|+|.|.+.
T Consensus 5 L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~ 84 (100)
T cd05888 5 LPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKCRVI 84 (100)
T ss_pred EEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEEEEE
Confidence 689887543 58999996432 11 111 2222211 25777765434568899999999999999999996
Q ss_pred C--CCCeeEEEEEEE
Q psy3125 68 T--EPKMNMAIMLNV 80 (163)
Q Consensus 68 ~--~~~~~~~~~l~V 80 (163)
+ .+.....+.|.|
T Consensus 85 ~~p~g~~~~~~~L~V 99 (100)
T cd05888 85 TFPAGNFEAELVLTV 99 (100)
T ss_pred eCCCCCeeeEEEEEe
Confidence 5 444566666766
No 85
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.21 E-value=2.5e-10 Score=67.73 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=50.3
Q ss_pred CeEEEecC--CCCceeEEEEeCCC-------eEEEecC--CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDA-------RFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|.+++. ++.+... .......|.|.++..+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V 81 (88)
T cd05735 2 QKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV 81 (88)
T ss_pred CeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence 44556664 23445677776652 3333321 1222467999999999999999999 99999999999999
Q ss_pred ecC
Q psy3125 161 DGK 163 (163)
Q Consensus 161 ~~~ 163 (163)
+.+
T Consensus 82 ~~~ 84 (88)
T cd05735 82 QEP 84 (88)
T ss_pred eCC
Confidence 753
No 86
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.21 E-value=1.7e-10 Score=66.56 Aligned_cols=61 Identities=16% Similarity=0.400 Sum_probs=41.1
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+ .| +.+.|+| ++. .+.... ....|+.+.. .....+|.|.+++.+|+|.|.|.+.+
T Consensus 3 L~C~a~~~~p~~~~~W~~-~g~-~i~~~~---~~~~~~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~N 65 (76)
T cd05895 3 LRCETVSEYPSLRFKWFK-NGK-EIGAKN---KPDNKIKIRK--KKKSSELQISKASLADNGEYKCMVSS 65 (76)
T ss_pred EEEecccCCCCCceEEEE-CCc-ccccCC---CCCceEEEEe--CCcEEEEEECcCCcccCEEEEEEEEe
Confidence 6899874 57 8999998 232 222111 1133444433 23467899999999999999999954
No 87
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.20 E-value=2.1e-10 Score=67.65 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=35.5
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
...|.|.+++..|+|.|+|.| |..|..+.++.|.|.|+
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~ 84 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP 84 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence 457999999999999999999 99999999999999875
No 88
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.19 E-value=2.3e-10 Score=66.13 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=39.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC----cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ----KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~----~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.|.|+| ++..+. ...++|+.+.. .+.+|.|.++. .+|+|.|+|.+.+
T Consensus 3 l~C~~~G~P~P~v~W~k--~g~~~~-----~~~~~~~~~~~----~~~~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05875 3 IECEAKGNPVPTFQWTR--NGKFFN-----VAKDPRVSMRR----RSGTLVIDFSGGGRPEDYEGEYQCFARN 64 (77)
T ss_pred EEEeccccCCCEEEEEE--CCEEcc-----CcCCCcEEEeC----CCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence 689999999 9999998 333221 12355666543 24578888764 2469999999954
No 89
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.18 E-value=3.8e-10 Score=67.99 Aligned_cols=76 Identities=20% Similarity=0.342 Sum_probs=54.5
Q ss_pred CCceEeeCCCeEEEecC--CCC-ceeEEEEe-CCCeEE-------EecCCCCceEEEEecccCcCCCeeEEEEc-CCC-C
Q psy3125 84 GRGARLSAGPLLNFAFP--DLL-TTNIYTYT-GDARFS-------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-P 150 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~-~~~~~~~~-~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~ 150 (163)
+....+..|..+.+.|. ..+ .+.+.|++ ++..+. +.. .......|.|.+++.+|+|.|+|.| |.. +
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR-NDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe-CCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 34456778888999995 333 35889987 443222 111 1122467999999999999999999 875 8
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+.++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8899998887
No 90
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.18 E-value=3.9e-10 Score=68.26 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=53.0
Q ss_pred ceEeeCCCeEEEecCC--CCceeEEEEeCCC-------------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 86 GARLSAGPLLNFAFPD--LLTTNIYTYTGDA-------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
...+..|..+.+.|.. .+.+.+.|++... |+.+.. ......|.|.+++.+|+|.|+|.| |..
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG--QHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee--cCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 3556677888888863 3456788876421 222221 122457999999999999999999 999
Q ss_pred CCccEEEEEEE
Q psy3125 150 PKMNMAIMLNV 160 (163)
Q Consensus 150 ~~~~~~~~L~V 160 (163)
|..+.++.|+|
T Consensus 88 G~~~~~~~l~~ 98 (98)
T cd05870 88 GGHQKSMYLDI 98 (98)
T ss_pred CcceeEEEEeC
Confidence 99999999986
No 91
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.18 E-value=8.7e-11 Score=67.53 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=44.5
Q ss_pred CCCceeEEEEeCCCeE-------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDARF-------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++..+ .+.. .......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 9 G~P~P~i~W~k~~~~i~~~~~r~~~~~-~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQYNTDRISLYQ-DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred ecCCCeEEEEECCEECcCCCCeEEEEE-cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 3466788888875433 2222 1122347999999999999999999 99999999999986
No 92
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=99.18 E-value=4e-10 Score=67.60 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=52.5
Q ss_pred CceEEecCC--CcEEEEEecCC--eeEE-ec---ceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL--HILT-TN---IYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~--~~~~-~~---~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.....+ .+|.|.|..++ ..+. .. +..+ .-.+|..+. .++..+.+|.|.+++.+|+|.|+|++.+.|
T Consensus 5 L~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP 83 (96)
T cd05887 5 LKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVTFP 83 (96)
T ss_pred EEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEeCC
Confidence 689998665 89999986432 1221 11 1111 113577775 345568999999999999999999997655
Q ss_pred Ce--eEEEEEEE
Q psy3125 71 KM--NMAIMLNV 80 (163)
Q Consensus 71 ~~--~~~~~l~V 80 (163)
.. ...+.|.|
T Consensus 84 ~G~~~~~~~l~~ 95 (96)
T cd05887 84 LGNTQSSTTVTV 95 (96)
T ss_pred CCCeeEEEEEEE
Confidence 44 45555555
No 93
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.17 E-value=8.6e-11 Score=67.24 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=47.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCCC-CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQN-SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|.. .+.+.+.|++++..+....+.. .....|.|.+++++|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 2 GRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 456667753 3456778887654321110000 11346999999999999999999 99999999999876
No 94
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.17 E-value=4.8e-10 Score=67.73 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=52.8
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec---------CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH---------PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
..+..|..+.+.|.. .+.+.+.|+.++..+.... ........|.|++++.+|+|.|+|.| |..|..+.
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 344456778888863 3456788887654322110 01123467999999999999999999 99999999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
+++|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 999986
No 95
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.17 E-value=1.1e-10 Score=67.87 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=51.7
Q ss_pred ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 86 GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...+..|..+.+.|... ..+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|.....+.|+|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDDVQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred cEEecCCCCEEEEEEecCCCceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 45567788888888532 23468898876543211000001235999999999999999999 88888888877765
No 96
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.16 E-value=9.8e-11 Score=65.71 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=45.0
Q ss_pred CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.+.|++++..+... .....|.|+++..+|+|.|+|.| |..|..+.++.|.|.
T Consensus 9 g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 9 AYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 3456789999987755421 23457999999999999999999 999988888888764
No 97
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.16 E-value=1.6e-10 Score=67.83 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=50.6
Q ss_pred EEEecCC----CCceeEEEEeCCCeEEEecCC--------CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 95 LNFAFPD----LLTTNIYTYTGDARFSVIHPQ--------NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 95 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
+.+.|.. .+...+.|++++..+...... ......|+|++++..|+|.|+|.| +..+..+.++.|.|+
T Consensus 3 ~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 3 IVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred EEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 5566652 345677888887655321100 012346999999999999999999 889999999999998
Q ss_pred cC
Q psy3125 162 GK 163 (163)
Q Consensus 162 ~~ 163 (163)
|.
T Consensus 83 ~p 84 (85)
T cd05853 83 GP 84 (85)
T ss_pred cC
Confidence 74
No 98
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.16 E-value=1.3e-10 Score=70.28 Aligned_cols=80 Identities=16% Similarity=0.345 Sum_probs=48.6
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--Ce
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KM 72 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~ 72 (163)
|+|.+.. .. ..|.|+|.....+.... ......+++|.-...-..++++|.|.+++.+|+|.|.|++...+ ..
T Consensus 9 L~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~ 88 (97)
T cd05775 9 LPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTI 88 (97)
T ss_pred EeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeE
Confidence 5787766 44 88999986443343332 12222233332211112357999999999999999999995433 33
Q ss_pred eEEEEEEE
Q psy3125 73 NMAIMLNV 80 (163)
Q Consensus 73 ~~~~~l~V 80 (163)
...+.|.|
T Consensus 89 ~~~f~L~v 96 (97)
T cd05775 89 TKEFTLHI 96 (97)
T ss_pred EEEEEEEe
Confidence 45555555
No 99
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.16 E-value=4.6e-10 Score=68.17 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=50.1
Q ss_pred CceEEecCC----CcEEEEEecCCeeE-Eecce--Ee-----cCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLHIL-TTNIY--TY-----TGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~~~-~~~~~--~~-----~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.+.... ..|.|+|.+...+. ..... .. ...+|+.+... ...++.+|.|.+++.+|+|.|.|.+.
T Consensus 6 L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~ 85 (100)
T cd05713 6 LPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQ 85 (100)
T ss_pred EEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEEEe
Confidence 689986332 57999986543332 11111 11 11257776542 22457899999999999999999996
Q ss_pred CCC-CeeEEEEEEE
Q psy3125 68 TEP-KMNMAIMLNV 80 (163)
Q Consensus 68 ~~~-~~~~~~~l~V 80 (163)
+.+ .....+.|+|
T Consensus 86 ~~~~~~~~~i~l~v 99 (100)
T cd05713 86 SDGFYEEATVELKV 99 (100)
T ss_pred cCCcEEEEEEEEEE
Confidence 433 3445555554
No 100
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.16 E-value=3.2e-10 Score=67.72 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=53.3
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCc-
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM- 152 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~- 152 (163)
..+....+..|..+.+.|.. .+. .+.|+.+++...... ........|.|+++..+|+|.|+|.| |..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 33445667788899999953 334 788887543221111 11123457999999999999999999 887775
Q ss_pred cEEEEEEE
Q psy3125 153 NMAIMLNV 160 (163)
Q Consensus 153 ~~~~~L~V 160 (163)
.+++.|.|
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 67777776
No 101
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.16 E-value=8.4e-11 Score=67.48 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=50.7
Q ss_pred CCeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 92 GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 G~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 2 GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5667788863 456778898876543221100 012346999999999999999999 99999999999986
No 102
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.16 E-value=4.4e-10 Score=66.08 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=45.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CC--CeeEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EP--KMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~--~~~~~~ 76 (163)
|.|.+.+.| +.+.|.+.+... +.. .....+..+. ......+|.|.+++.+|+|.|.|.+.+ .. ..+..+
T Consensus 6 l~C~~~~~~~~~~~W~~~~~~~----~~~-~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 6 VNCIVQGNEVVDFSWTYPGKDI----GKG-IPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred EEEEEECCCccEEEEEECCccC----CCC-ceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 689999999 999998632110 000 0000011111 112256899999999999999999954 32 345555
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 66654
No 103
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.16 E-value=2.2e-10 Score=69.60 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=57.3
Q ss_pred ceEeeCCCeEEEecC--C-CCceeEEEEeCCCeEEEecC---------CCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 86 GARLSAGPLLNFAFP--D-LLTTNIYTYTGDARFSVIHP---------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
...+..|..+.+.|. . .+.+.+.|++++..+.-... .......|.|.+++++|+|.|+|.| |..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 345667888888885 3 45667899988764431110 0112467999999999999999999 999999
Q ss_pred cEEEEEEEec
Q psy3125 153 NMAIMLNVDG 162 (163)
Q Consensus 153 ~~~~~L~V~~ 162 (163)
+..+.|.|..
T Consensus 92 ~~t~~L~V~v 101 (101)
T cd04975 92 SLTFELYVNV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9999999863
No 104
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.15 E-value=1.6e-10 Score=66.88 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=39.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC----cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ----KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~----~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.|.|+| ++..+..+ .++++.+.. .+.+|.|.++. .+|+|.|+|.+.+
T Consensus 3 l~C~~~G~P~P~v~W~k--~g~~l~~~-----~~~~~~~~~----~~g~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05733 3 IKCEAKGNPPPTFSWTR--NGTHFDPE-----KDPRVTMKP----DSGTLVIDNMNGGRAEDYEGEYQCYASN 64 (77)
T ss_pred EEeeCcccCCCeEEEEE--CCeECCCC-----CCCCEEEeC----CCCEEEEeccCCCCCcCCCEEEEEEEEc
Confidence 689999999 9999998 33332211 234554432 35578888875 4799999999954
No 105
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.15 E-value=1.5e-10 Score=69.47 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=45.2
Q ss_pred CceEEec-----CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCee
Q psy3125 1 MACTVMG-----LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMN 73 (163)
Q Consensus 1 l~C~~~~-----~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~ 73 (163)
|.|.+.+ .| +.|.|+|.+....+.. ....|+.. .+.+|.|.+++.+|+|.|+|.+. ..+...
T Consensus 19 L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~~------~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 19 IKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-----EERSRMHQ------QKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EECCCCCcccccCCCceEEEEEcCCCCcccc-----cccceeee------cCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 6799998 57 8999999432211110 01233322 13579999999999999999994 445555
Q ss_pred EEEEEEE
Q psy3125 74 MAIMLNV 80 (163)
Q Consensus 74 ~~~~l~V 80 (163)
..+.|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 5666654
No 106
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.15 E-value=2.2e-10 Score=67.54 Aligned_cols=66 Identities=27% Similarity=0.474 Sum_probs=44.9
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCC-eeEEE
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPK-MNMAI 76 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~-~~~~~ 76 (163)
|.|.+ .+.| +.+.|+| ++..+. ....|+.+.. +.+|.|.+++.+|+|.|+|.+.+ .+. .+..+
T Consensus 16 l~C~~~~g~p~p~i~W~k--~g~~~~------~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 16 LECSPPRGHPEPTVSWRK--DGQPLN------LDNERVRIVD-----DGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred EEEECCCCCCCCEEEEEE--CCEECC------CCCCCEEEcc-----CCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 67998 6888 9999998 332221 1134555442 34799999999999999999954 333 34455
Q ss_pred EEE
Q psy3125 77 MLN 79 (163)
Q Consensus 77 ~l~ 79 (163)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
No 107
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.15 E-value=2.2e-10 Score=68.85 Aligned_cols=55 Identities=27% Similarity=0.570 Sum_probs=38.8
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| +.|.|+| ++..+..+ .+.++.+. +.+|.|.++. .+|+|.|+|.+.+
T Consensus 24 l~C~~~G~P~P~i~W~k--~g~~l~~~-----~~~~~~~~------~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 24 LNCEARGNPVPTYRWLR--NGTEIDTE-----SDYRYSLI------DGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred EEEEeeecCCCEEEEEE--CCeECccC-----CCceEEee------CCeEEEccCCccCcCEEEEEEEEc
Confidence 689999999 9999998 33333211 12244332 2368999985 6999999999954
No 108
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.14 E-value=3.1e-10 Score=65.26 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=44.0
Q ss_pred CCCceeEEEEeCCC-------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDA-------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++. ++.+.. .......|.|.+++.+|+|.|+|.| |..|..+.++.|.|
T Consensus 9 G~P~P~v~W~k~~~~l~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 9 GVPHPQIFWKKENESLTHNTDRVSMHQ-DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EecCCEEEEEECCEECCCCCCeEEEEE-cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 34556788887643 333322 1122346999999999999999999 99999999999986
No 109
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.14 E-value=3.8e-10 Score=67.20 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+....+..|..+.+.|. ..+.+.+.|+.++..+.... ........|.|.+++.+|.|.|+|.| |..|..+..+
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 34455778899999996 35678999998876442111 11123457999999999999999999 9999999999
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|+|
T Consensus 87 ~L~v 90 (90)
T cd04972 87 QVTV 90 (90)
T ss_pred EEeC
Confidence 9876
No 110
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.14 E-value=3.4e-10 Score=65.43 Aligned_cols=57 Identities=18% Similarity=0.416 Sum_probs=37.7
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc----CCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK----RDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~----~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| |.|.|+| ++..+.. ..++++.+.. .+.+|.|..+.. .|.|.|+|.+.+
T Consensus 3 l~C~a~G~P~P~i~W~k--~g~~l~~-----~~~~~~~~~~----~~g~l~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05874 3 IQCEAKGKPPPSFSWTR--NGTHFDI-----DKDPKVTMKP----NTGTLVINIMNGEKAEAYEGVYQCTARN 64 (77)
T ss_pred EEeeCcccCCCeEEEEE--CCeECCC-----cCCCCEEEeC----CCceEEEeccccCCCCCCCEEEEEEEEc
Confidence 689999999 9999998 3332211 1234444432 244677766654 478999999954
No 111
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.14 E-value=7.3e-10 Score=66.28 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=54.5
Q ss_pred EEcCCCceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEe------cCCCCceEEEEecccCcCCCeeEEEEc-CCC-C
Q psy3125 80 VDDRGRGARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVI------HPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-P 150 (163)
Q Consensus 80 V~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~ 150 (163)
|...+....+..|..+.+.|... .+..+.|+.++...... .........|+|.+++.+|+|.|+|.| |.. +
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44445567788899999999632 12478888644322111 112234567999999999999999999 774 5
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+.++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 5677777765
No 112
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.14 E-value=5.1e-10 Score=66.68 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=33.7
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
..|.|.+++.+|+|.|+|.| |..|..+..+.|.|.+
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 83 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD 83 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence 35999999999999999999 9999999999999986
No 113
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=99.14 E-value=8.9e-10 Score=66.61 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=51.9
Q ss_pred CceEEecCC-----CcEEEEEecC--C-eeEEecce---Ee--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD--L-HILTTNIY---TY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~--~-~~~~~~~~---~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|+|.....+ .+|.|.|..+ . .+..+... .+ .-.+|..+.. +..++.+|.|.+++.+|+|.|.|++.
T Consensus 5 L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~C~v~ 83 (99)
T cd05886 5 LHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSFEDGTISLSRLELEDEGVYICEFA 83 (99)
T ss_pred EEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCCCcceEEEcCCccccCEEEEEEEE
Confidence 689998532 3799998532 1 22222211 11 1236777763 34578999999999999999999997
Q ss_pred CCC--CeeEEEEEEE
Q psy3125 68 TEP--KMNMAIMLNV 80 (163)
Q Consensus 68 ~~~--~~~~~~~l~V 80 (163)
+.| ..+..+.|.|
T Consensus 84 t~P~g~~~~~~~L~V 98 (99)
T cd05886 84 TFPTGNRESQLNLTV 98 (99)
T ss_pred eCCCCCeEEEEEEEE
Confidence 644 4566666766
No 114
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.13 E-value=3.6e-10 Score=66.53 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=54.4
Q ss_pred EeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC-----CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 88 RLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 88 ~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.+..|..+.+.|.. .+.+.+.|++++..+...... ....+.|.|.++..+|+|.|+|.| |..|..+..+.|+
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 45667888888863 355678998876644321110 123457999999999999999999 9999999999998
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 6
No 115
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.12 E-value=3e-10 Score=66.75 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=45.3
Q ss_pred CceEEecC--C-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+.+. | +.+.|.+.+... ..+.. ...+.. .........+|.|.+++.+|+|.|.|.+.+ .+..+..+
T Consensus 6 L~C~~~g~~~~~~~i~W~~~~~~~--~~~~~---~~~~~~-~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 6 LNCTVLTELNEGVDFQWTYPGKKR--GRGKS---MVTRQS-LSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred EEEEEEeCCCccEEEEEecCCccc--CCceE---eecccc-cccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 68999999 7 899998632211 00100 011111 111112356899999999999999999944 45556665
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5554
No 116
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.12 E-value=3.2e-10 Score=68.18 Aligned_cols=77 Identities=21% Similarity=0.177 Sum_probs=56.7
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec---CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH---PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+..|..+.+.|.. .+.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.| |..|.....+.|.|
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 456678888888864 3567788887764322110 00112346999999999999999999 99999999999999
Q ss_pred ecC
Q psy3125 161 DGK 163 (163)
Q Consensus 161 ~~~ 163 (163)
..|
T Consensus 93 ~~~ 95 (95)
T cd05730 93 FAK 95 (95)
T ss_pred EeC
Confidence 765
No 117
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.12 E-value=8.7e-10 Score=67.67 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=51.4
Q ss_pred CceEEecC------C-CcEEEEEec--C--C-eeEE-ecceEe-c--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGL------G-RPVSWMRKR--D--L-HILT-TNIYTY-T--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~------~-~~v~W~k~~--~--~-~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+... . ..|.|+|.. . . .++. .+.... . ...|+.+. ....++.+|.|.+++.+|+|.|.|
T Consensus 7 L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD~G~Y~C 85 (106)
T cd05714 7 LPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLEDSGRYRC 85 (106)
T ss_pred EeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHHCEEEEE
Confidence 68998864 2 799999962 1 1 1222 122211 1 12244332 123568999999999999999999
Q ss_pred EeeC-CCCeeEEEEEEEEc
Q psy3125 65 QVNT-EPKMNMAIMLNVDD 82 (163)
Q Consensus 65 ~~~~-~~~~~~~~~l~V~~ 82 (163)
.+.. .......+.|+|..
T Consensus 86 ~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 86 EVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEcCCCceEEEEEEEEEE
Confidence 9954 34456777777764
No 118
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.12 E-value=5.7e-10 Score=66.26 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
+....+..|..+.+.|.. .+.+.+.|+.++..+.... ........|.|.+++.+|+|.|+|.| |..|..+..+
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 345677888889998863 3556888998865443211 11125778999999999999999999 8889999999
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8876
No 119
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.12 E-value=1.2e-10 Score=68.64 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+....+..|..+.+.|.. .+.+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|..+.++.|.|
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 344567778888888863 345678888876533211100112236999999999999999999 99999999998876
No 120
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.11 E-value=8.1e-10 Score=64.80 Aligned_cols=69 Identities=17% Similarity=0.461 Sum_probs=45.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.| +.|.|+| ++..+. .+.++.... .....+.|.|.++..+|+|.|.|.+.+ .+.....+.|
T Consensus 14 l~C~~~~~p~~~v~W~k--~~~~~~-------~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 14 LKCPASGNPRPTITWLK--DGKPFK-------KEHRIGGYK-VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred EEEEcCCCCCCeEEEEE--CCEECc-------ccCceeEEE-ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 679999999 9999998 322221 122222211 112457899999999999999999944 4455555555
Q ss_pred E
Q psy3125 79 N 79 (163)
Q Consensus 79 ~ 79 (163)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 121
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.11 E-value=6.9e-10 Score=65.38 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=43.5
Q ss_pred eEEEEeCCCeEEEecC--------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEecC
Q psy3125 106 NIYTYTGDARFSVIHP--------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 106 ~~~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~~ 163 (163)
...|++++..+..... .......|.|.+++..|+|.|+|.| |..+..+.++.|.|.|.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p 84 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP 84 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence 4567776654432211 1123456999999999999999999 88899999999999874
No 122
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.11 E-value=1.9e-10 Score=66.34 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=49.0
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|.....++|.|.
T Consensus 2 ~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 2 ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 456667752 34567888877653321110 0012346999999999999999999 999999999999883
No 123
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.11 E-value=2.2e-10 Score=65.94 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=49.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.|.. .+.+.+.|+.++..+..... .......|.|++++.+|+|.|+|.| |..|..+..+.|+|.
T Consensus 2 ~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 2 ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 445666643 34566888877654322110 1122356999999999999999999 999999999999984
No 124
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.11 E-value=1e-09 Score=66.07 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=51.6
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCe-----------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDAR-----------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
..+..|..+.+.|.. .+.+.+.|+.++.. +.+. .......|.|++++.+|+|.|+|.| |..|..
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR--GHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe--CCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 345566777777753 34456777765422 2211 1233567999999999999999999 999999
Q ss_pred cEEEEEEE
Q psy3125 153 NMAIMLNV 160 (163)
Q Consensus 153 ~~~~~L~V 160 (163)
+.++.|.|
T Consensus 89 ~~s~~l~v 96 (96)
T cd05732 89 QQSMYLEV 96 (96)
T ss_pred EEEEEEeC
Confidence 99999976
No 125
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.10 E-value=2.3e-09 Score=65.78 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=52.3
Q ss_pred CceEEecC-----C--CcEEEEEecCC-----eeEEecceE--e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGL-----G--RPVSWMRKRDL-----HILTTNIYT--Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~-----~--~~v~W~k~~~~-----~~~~~~~~~--~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+... . ..|.|+|.+.. .++...... . ...+|+.+... ..++.+|.|.+++.+|+|+|.|
T Consensus 7 L~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C 85 (106)
T cd05877 7 LPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLEDYGRYRC 85 (106)
T ss_pred EEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHHCEEEEE
Confidence 68988765 2 67999996432 112111111 1 12367777542 3568899999999999999999
Q ss_pred Eee-CCCCeeEEEEEEEE
Q psy3125 65 QVN-TEPKMNMAIMLNVD 81 (163)
Q Consensus 65 ~~~-~~~~~~~~~~l~V~ 81 (163)
.+. ..+.....+.|+|.
T Consensus 86 ~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 86 EVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEecccceEEEEEEEEE
Confidence 994 34456667777765
No 126
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.10 E-value=3.8e-10 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.326 Sum_probs=52.9
Q ss_pred eeCCCeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 89 LSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 89 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...|..+.+.|.. .+.+.+.|++++..+..... .....+.|.|.+++.+|+|.|+|.| |..|..+..+.|+|
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 3456777888853 34567889888775533211 1123467999999999999999999 88898888888875
No 127
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.10 E-value=5.2e-10 Score=67.29 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=43.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEccc-----CcCCCeeEEEEeeCC--CCe
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYA-----QKRDAGIYECQVNTE--PKM 72 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v-----~~~D~G~Y~C~~~~~--~~~ 72 (163)
|.|.+.+.| +.|.|+| ++..+... .+.++.+.. +.+|.|.++ ..+|.|.|+|.+.+. +..
T Consensus 19 l~C~v~g~P~p~i~W~k--~g~~l~~~-----~~~~~~~~~-----~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 19 LNCSAEGEPPPKIEWKK--DGVLLNLV-----SDERRQQLP-----NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred EeeecccCCCCEEEEEE--CCeECccc-----cCcceEEcc-----CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 689999999 9999998 33333211 122344332 234677766 689999999999544 443
Q ss_pred -eEEEEEEE
Q psy3125 73 -NMAIMLNV 80 (163)
Q Consensus 73 -~~~~~l~V 80 (163)
+..+.|.|
T Consensus 87 ~s~~~~l~v 95 (95)
T cd05722 87 VSRTARLTV 95 (95)
T ss_pred EEeeeEEeC
Confidence 55555543
No 128
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.09 E-value=1.4e-09 Score=65.42 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=49.1
Q ss_pred eEeeCCCeEEEecC--CCCceeEEEEeC--------------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC
Q psy3125 87 ARLSAGPLLNFAFP--DLLTTNIYTYTG--------------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150 (163)
Q Consensus 87 ~~v~~~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~ 150 (163)
..+..|..+.+.|. ..+...+.|+.+ ++|+.+.. .....++|.|.+++.+|+|.|+|.+.+..
T Consensus 7 v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 7 VTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred EEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 45566777777773 334455667532 23444322 12345789999999999999999995566
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+..++|.|
T Consensus 86 ~~~~~~~l~v 95 (95)
T cd07701 86 VKTSKAYLTV 95 (95)
T ss_pred CccEEEEEEC
Confidence 6688888876
No 129
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=99.09 E-value=1.6e-09 Score=65.40 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=50.1
Q ss_pred CceEEecCC----CcEEEEEecCC--eeE-Ee---cceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG----RPVSWMRKRDL--HIL-TT---NIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~--~~~-~~---~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+...+ ..|.|+|.+.. ..+ .. .+..+.+ .+|..+.... .++.+|.|.+++.+|+|.|.|++..
T Consensus 5 L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~v~~ 83 (98)
T cd05718 5 LECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYICEFAT 83 (98)
T ss_pred EEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEEEEEe
Confidence 689888653 57999996542 111 11 0111111 3465555422 2688999999999999999999954
Q ss_pred --CCCeeEEEEEEE
Q psy3125 69 --EPKMNMAIMLNV 80 (163)
Q Consensus 69 --~~~~~~~~~l~V 80 (163)
.+.....+.|.|
T Consensus 84 ~~~g~~~~~~~l~V 97 (98)
T cd05718 84 FPQGNRQKVTTLTV 97 (98)
T ss_pred CCCCcEEEEEEEEe
Confidence 345556666665
No 130
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.09 E-value=1.2e-09 Score=67.36 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=48.9
Q ss_pred CceEEecCC-CcEEEEEecCC---eeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ ..+.|+|.... ..+..... .....+|+.+......+.++|.|.+++.+|+|.|.|.+..
T Consensus 18 L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 91 (109)
T cd04983 18 LNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSE 91 (109)
T ss_pred EEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEec
Confidence 689999877 99999986421 11111111 1124678988765456799999999999999999999954
No 131
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.09 E-value=8.7e-10 Score=65.76 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=46.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-C-CCCeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-T-EPKMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~-~~~~~~~~~ 77 (163)
|.|.. +.| +.|.|+|.++..... .......|+... ..+|.|.+++.+|+|.|+|.+. + .......+.
T Consensus 16 L~C~~-~~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~ 85 (91)
T cd05871 16 LECLP-KSPQASVKWLFQRGGDQRK---EEVKTEERLIHT------ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYT 85 (91)
T ss_pred EEEEC-CCCCceEEEEEECCCCCcc---ccccccccEEEe------cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEE
Confidence 68996 467 999999854322111 011123455543 2459999999999999999994 3 333345667
Q ss_pred EEEEc
Q psy3125 78 LNVDD 82 (163)
Q Consensus 78 l~V~~ 82 (163)
|.|.+
T Consensus 86 l~v~~ 90 (91)
T cd05871 86 LHVIE 90 (91)
T ss_pred EEEec
Confidence 77764
No 132
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.09 E-value=4.8e-10 Score=64.48 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=43.5
Q ss_pred CCCceeEEEEeCCCeEE-------EecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDARFS-------VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++..+. +.. .......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 9 G~P~P~v~W~k~~~~i~~~~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTYNTDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred ecCCCeEEEEECCEECCCCCCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 34456777887754332 211 1123446999999999999999999 99999999999976
No 133
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.08 E-value=1.9e-10 Score=65.04 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=41.2
Q ss_pred CCceeEEEEeCCCe-----EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 102 LLTTNIYTYTGDAR-----FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 102 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.+.+.+.|++++.. +... ....|.|++++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 10 DPVPTVLWRKEDGELPKGRAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CCCCEEEEEECCccCCCCcEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 34456788776542 2222 2335999999999999999999 99999999998876
No 134
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.08 E-value=1.9e-10 Score=65.45 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.+.+.+.|++++..+............|.|.+++.+|+|.|+|.| |..|..+.++.+.|.
T Consensus 10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 10 YPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred eCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 345677888876543211111122356999999999999999999 988988888887764
No 135
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.08 E-value=1.1e-09 Score=62.79 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred EEecC--CCCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 96 NFAFP--DLLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
.+.|. ..+.+.+.|++++..+ .+.. ......|.|.++..+|+|.|+|.| |..|..+.++.|.|
T Consensus 3 ~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 3 RLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET--TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE--CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 44443 3455678888776543 2222 233567999999999999999999 99999999998876
No 136
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.07 E-value=3.8e-10 Score=64.54 Aligned_cols=68 Identities=19% Similarity=0.079 Sum_probs=47.7
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+.++.|+|
T Consensus 2 ~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 2 GDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 456666742 345678888876543211100 011235999999999999999999 99999999999986
No 137
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.07 E-value=9.9e-10 Score=65.43 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..|.|.+++.+|+|.|+|.| |..|..+.++.|.|.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 46999999999999999999 999999999999984
No 138
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.07 E-value=1.2e-09 Score=65.46 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=39.0
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| +.|.|+| +...+. ....|+.+. +..|.|.++. .+|+|.|+|.+.+
T Consensus 24 l~C~a~G~P~P~i~W~k--~~~~i~------~~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 24 VNCRARANPFPIYKWRK--NNLDID------LTNDRYSMV------GGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred EeCcCccCCCCEEEEEE--CCEEcc------CCCCeEEEE------CCEEEECcCCcCCCCEEEEEEEEe
Confidence 689999999 9999998 322221 123466543 2469999985 6999999999944
No 139
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.07 E-value=1.9e-09 Score=64.51 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred CCceEeeCCCeEEEecC--CCCceeEEEEeCCCeE------EEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 84 GRGARLSAGPLLNFAFP--DLLTTNIYTYTGDARF------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
|+.+.+..|..+.+.|. ..+.+.+.|++++..+ .+.... .....|.|.+++.+|+|.|+|.| |..|..+.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-GKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-CCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 44567788999999996 3456788999886533 221111 22357999999999999999999 99999999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 888876
No 140
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.07 E-value=2.3e-09 Score=66.69 Aligned_cols=71 Identities=17% Similarity=0.407 Sum_probs=48.8
Q ss_pred CceEEecCC-----CcEEEEEecC-----CeeEEecc-eEec-C----CCeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD-----LHILTTNI-YTYT-G----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~-----~~~~~~~~-~~~~-~----~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.... ..|.|..... ..++...+ ..+. . .+|..+..+...++.+|.|.+++.+|+|+|+|
T Consensus 18 L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C 97 (116)
T cd05879 18 LSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTC 97 (116)
T ss_pred EEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccCEEEEE
Confidence 689998643 6899954211 12333322 2322 1 24888877666779999999999999999999
Q ss_pred EeeCCCC
Q psy3125 65 QVNTEPK 71 (163)
Q Consensus 65 ~~~~~~~ 71 (163)
++.+.+.
T Consensus 98 ~v~n~p~ 104 (116)
T cd05879 98 DVKNPPD 104 (116)
T ss_pred EEEcCCC
Confidence 9976443
No 141
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.06 E-value=1.5e-09 Score=65.21 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=43.1
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccC-cCCCeeEEEEeeC-CCCe-eEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDAGIYECQVNT-EPKM-NMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~~-~~~~-~~~~ 76 (163)
|.|.+.|.| +.|.|+| ++..+.. ..+.++.+. +.+|.|.++. .+|+|.|+|.+.+ .+.. +..+
T Consensus 24 l~C~a~g~P~p~i~W~~--~g~~l~~-----~~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a 90 (94)
T cd05850 24 LGCRARASPPATYRWKM--NGTEIKF-----APESRYTLV------AGNLVINNPQKARDAGSYQCLAINRCGTVVSREA 90 (94)
T ss_pred EEeEceeCCCCEEEEEE--CCEECcc-----CCCceEEEE------CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEE
Confidence 689999999 9999998 3333321 123455544 2358998865 5999999999944 4433 3444
Q ss_pred EE
Q psy3125 77 ML 78 (163)
Q Consensus 77 ~l 78 (163)
.|
T Consensus 91 ~l 92 (94)
T cd05850 91 NL 92 (94)
T ss_pred EE
Confidence 44
No 142
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.06 E-value=4.7e-09 Score=67.55 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred EEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEEEEcCCCce------EeeCCCeEEEecCCC---C-ceeEEEEeCCCeE
Q psy3125 48 NMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLNVDDRGRGA------RLSAGPLLNFAFPDL---L-TTNIYTYTGDARF 116 (163)
Q Consensus 48 ~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~------~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~ 116 (163)
+|.|.+++.+|+|.|.|++.+ .+.....+.|.|..+|... ....+..+.+.|... + ...+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 699999999999999999954 3456677788888765321 111345577888642 2 2478898876421
Q ss_pred E----------Ee---cCCC---CceEEEEecccCcCCCeeEEEEc
Q psy3125 117 S----------VI---HPQN---SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 117 ~----------~~---~~~~---~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
. .. .... ...+.|.|..-...+.+.|.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V 127 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRV 127 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEE
Confidence 1 00 0011 11345777766667788999999
No 143
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=1.7e-09 Score=65.45 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=47.1
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCC--CCeEEEEEcccCcCC-CeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQN--SDEWNMKIDYAQKRD-AGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~i~~v~~~D-~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.|.| + .|.|++ +...+..+ .++||.+..... ....+|.|.++..+| .|.|.|.+ |..+....
T Consensus 21 L~C~~~g~P~P~~v~W~~--~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~ 93 (98)
T cd05758 21 VECFIFSTPPPDRIVWTW--KENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTA 93 (98)
T ss_pred EEEEEcccCCCCEeEEEE--CCEEccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccE
Confidence 689999999 7 599998 33222211 135777664211 223589999999955 89999999 44555555
Q ss_pred EEEE
Q psy3125 75 AIML 78 (163)
Q Consensus 75 ~~~l 78 (163)
.+.|
T Consensus 94 ~~~L 97 (98)
T cd05758 94 IISL 97 (98)
T ss_pred EEEe
Confidence 5544
No 144
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.05 E-value=1.5e-09 Score=65.54 Aligned_cols=74 Identities=16% Similarity=0.354 Sum_probs=42.6
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEc--ccCcCCCeeEEEEee-CCCC-eeEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKID--YAQKRDAGIYECQVN-TEPK-MNMA 75 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~--~v~~~D~G~Y~C~~~-~~~~-~~~~ 75 (163)
|.|.+.|.| +.|.|+| ++..+..+.. ....+..+.. ......+.|. .++.+|+|.|+|.+. ..+. .+..
T Consensus 21 l~C~~~g~P~p~i~W~k--~g~~l~~~~~--~~~~~~~~~~--~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~ 94 (100)
T cd07693 21 LNCKAEGRPTPTIQWLK--NGQPLETDKD--DPRSHRIVLP--SGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRN 94 (100)
T ss_pred EEeeCCcCCCCEEEEEE--CCEECccccC--CCCcceEEec--CCcEEEEEeeccCCCcCcCEEEEEEEEccccceecce
Confidence 689999999 9999998 3333321100 0112222222 1222333333 347999999999994 4444 5566
Q ss_pred EEEEE
Q psy3125 76 IMLNV 80 (163)
Q Consensus 76 ~~l~V 80 (163)
+.|.|
T Consensus 95 ~~l~v 99 (100)
T cd07693 95 ASLEV 99 (100)
T ss_pred EEEEe
Confidence 66665
No 145
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.05 E-value=3.7e-10 Score=64.24 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=44.1
Q ss_pred CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 102 LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.+.+.+.|++++..+.... ........|.|++++.+|+|.|+|.| |..|..+..+.|.|+
T Consensus 10 ~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 10 LPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred ecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4556788887765332110 01122457999999999999999999 999999999999885
No 146
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.04 E-value=5.6e-10 Score=66.83 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=43.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceE-----ecCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYT-----YTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~-----~~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|...+.+ +.|.|++.+.+.++...... ....+|+.+... ...++++|.|.+++.+|+|+|.|.+.+
T Consensus 12 L~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~ 86 (94)
T cd07690 12 LPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVED 86 (94)
T ss_pred EEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECC
Confidence 689999888 99999863222111100000 012455555431 124578899999999999999999943
No 147
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.04 E-value=2.5e-09 Score=63.97 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=56.0
Q ss_pred cCCCceEeeCCCeEEEecCC--CCceeEEEEeCCCe------EEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 82 DRGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDAR------FSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 82 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
..+....+..|..+.+.|.. .+.+.+.|++++.. +.+.. ......|.|.+++.+|+|.|+|.| |..|..
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS--TEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE--cCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 34456778889999999963 45567899887542 22221 223467999999999999999999 999998
Q ss_pred cEEEEE
Q psy3125 153 NMAIML 158 (163)
Q Consensus 153 ~~~~~L 158 (163)
+..+.|
T Consensus 86 ~~~~~l 91 (92)
T cd05747 86 EAQFTL 91 (92)
T ss_pred eEEEEe
Confidence 888776
No 148
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.04 E-value=1.2e-09 Score=64.87 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=44.5
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l 78 (163)
|+|.+.+.++.+.|+|.+.. +..... ...|+.... ..|.|.+++.+|+|.|+|.+.+. ........|
T Consensus 16 L~C~~~~p~~~i~W~k~~~~--~~~~~~---~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 16 LECSPKSNLASVVWLFQGGP--LQRKEE---PEERLLVTE------DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred EEEeCCCCCceEEEEECCcc--cccccC---cCceEEEcC------CCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 68999883399999984322 111100 123444332 23999999999999999999543 334455556
Q ss_pred EEEc
Q psy3125 79 NVDD 82 (163)
Q Consensus 79 ~V~~ 82 (163)
.|.+
T Consensus 85 ~V~~ 88 (89)
T cd04979 85 NVLE 88 (89)
T ss_pred EEec
Confidence 6653
No 149
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.04 E-value=4.1e-09 Score=63.30 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=48.8
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCC--------------eEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDA--------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~ 150 (163)
..+..|..+.+.|.. .+.+.+.|++++. |+.+.. .....+.|.|.+++.+|+|.|+|.+.+..
T Consensus 7 ~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~nV~~~D~G~YtC~~~t~~ 85 (95)
T cd05882 7 ETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK-STPTELIISISNVQLSDEGEYTCSIFTMP 85 (95)
T ss_pred EEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe-CCCceEEEEECCCCcccCEEEEEEEEeec
Confidence 456667777777752 3345677765543 332222 12245789999999999999999996666
Q ss_pred CccEEEEEEE
Q psy3125 151 KMNMAIMLNV 160 (163)
Q Consensus 151 ~~~~~~~L~V 160 (163)
..+..+.|.|
T Consensus 86 ~~~~~~~~~v 95 (95)
T cd05882 86 VRTAKATVTV 95 (95)
T ss_pred cccEEEEEEC
Confidence 6666776654
No 150
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=99.03 E-value=2.7e-09 Score=64.46 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=50.4
Q ss_pred CceEEecCC--CcEEEEEecCC---eeEEe---cceEec--CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---HILTT---NIYTYT--GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~~~~~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|...... ..|.|+|.+.+ .+... .+.... ..+|+.+.. .+.++.+|.|.+++.+|+|.|.|.+...|
T Consensus 6 L~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p 84 (97)
T cd05846 6 LSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS-LGLNSTSITIWNVTLEDEGCYKCIFNTFP 84 (97)
T ss_pred EEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC-CCCCccEEEEeCCceeeeEEEEEEEEeCC
Confidence 679877555 57999985432 22211 111111 124555542 34568899999999999999999996544
Q ss_pred --CeeEEEEEEE
Q psy3125 71 --KMNMAIMLNV 80 (163)
Q Consensus 71 --~~~~~~~l~V 80 (163)
.....+.|+|
T Consensus 85 ~g~~~~~~~L~v 96 (97)
T cd05846 85 DGSKSGTMCLTV 96 (97)
T ss_pred CCCeeeEEEEEE
Confidence 4566666766
No 151
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.03 E-value=1.6e-09 Score=64.97 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=53.7
Q ss_pred eEeeCCCeEEEecCCC-------CceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 87 ARLSAGPLLNFAFPDL-------LTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
..+..|..+.+.|... +.+.+.|++++....... +.......|.|.++..+|+|.|+|.+ |..+..+.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence 3455688888999533 356789998875432211 01112356999999999999999999 88899999
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 89 ~~~L~v 94 (94)
T cd05756 89 SISLTV 94 (94)
T ss_pred EEEEEC
Confidence 998876
No 152
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.02 E-value=1.2e-09 Score=62.90 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=49.0
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|++++..+...... ......|.|.+++..|+|.|+|.| |..|....++.|+|
T Consensus 2 ~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 2 EDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 34556664 3456788888877654322111 011236999999999999999999 99999999999998
No 153
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.02 E-value=2.3e-09 Score=63.83 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=32.9
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..|.|.+++.+|+|.|+|.| |..|..+.+++|+|.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 90 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL 90 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence 57999999999999999999 999999999999983
No 154
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.02 E-value=7.9e-09 Score=63.82 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=53.5
Q ss_pred CceEEecCC-----------CcEEEEEecC---CeeE-EecceEe---cCCCeEEEecc-CCCCeEEEEEcccCcCCCee
Q psy3125 1 MACTVMGLG-----------RPVSWMRKRD---LHIL-TTNIYTY---TGDARFSVIHP-QNSDEWNMKIDYAQKRDAGI 61 (163)
Q Consensus 1 l~C~~~~~~-----------~~v~W~k~~~---~~~~-~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~ 61 (163)
|+|.+...+ ..|.|+|.+. ..++ ..++... .-.+|+.+... ...++.+|.|.+++.+|+|+
T Consensus 7 LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~ 86 (110)
T cd05878 7 LPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGV 86 (110)
T ss_pred EeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEE
Confidence 688887533 5699999632 1222 2222211 12358877542 23568899999999999999
Q ss_pred EEEEeeC-CCCeeEEEEEEEEc
Q psy3125 62 YECQVNT-EPKMNMAIMLNVDD 82 (163)
Q Consensus 62 Y~C~~~~-~~~~~~~~~l~V~~ 82 (163)
|.|.+.. .......+.|+|..
T Consensus 87 Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 87 YRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred EEEEEEeCCCcceEEEEEEEEE
Confidence 9999954 34556777777764
No 155
>smart00406 IGv Immunoglobulin V-Type.
Probab=99.02 E-value=1.5e-09 Score=63.03 Aligned_cols=66 Identities=26% Similarity=0.483 Sum_probs=46.8
Q ss_pred CceEEecCC-C--cEEEEEecC---CeeEEec---ceEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-R--PVSWMRKRD---LHILTTN---IYTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-~--~v~W~k~~~---~~~~~~~---~~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|+|.+.... . .|.|+|... ...+... ...+ ...+|+.+......+.++|.|.+++.+|+|.|.|.+
T Consensus 4 l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 4 LSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 689998776 3 899999643 1222221 1122 235788887654467899999999999999999974
No 156
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=99.01 E-value=5.3e-09 Score=64.41 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=52.6
Q ss_pred CceEEec------CC--CcEEEEEecC------CeeEEecceE--e--cCCCeEEEeccC-CCCeEEEEEcccCcCCCee
Q psy3125 1 MACTVMG------LG--RPVSWMRKRD------LHILTTNIYT--Y--TGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGI 61 (163)
Q Consensus 1 l~C~~~~------~~--~~v~W~k~~~------~~~~~~~~~~--~--~~~~r~~~~~~~-~~~~~~L~i~~v~~~D~G~ 61 (163)
|+|.+.- .+ +.|.|.|... ..++...+.. + .-.+|.++...+ ..++.+|.|.+++.+|+|.
T Consensus 7 LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~ 86 (110)
T cd05902 7 LPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGT 86 (110)
T ss_pred EeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEE
Confidence 6899662 21 7999998621 1112211211 1 124688887533 2468999999999999999
Q ss_pred EEEEeeC-CCCeeEEEEEEEE
Q psy3125 62 YECQVNT-EPKMNMAIMLNVD 81 (163)
Q Consensus 62 Y~C~~~~-~~~~~~~~~l~V~ 81 (163)
|.|.+.. .......+.|+|.
T Consensus 87 Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 87 YRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred EEEEEEECCcccEEEEEEEEE
Confidence 9999954 3345667777775
No 157
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.01 E-value=1.2e-09 Score=66.38 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=53.0
Q ss_pred EeeCCCeEEEecC--CCCceeEEEEeCCCeEEEecC-----C-----CCceEEEEecccCcCCCeeEEEEc-CCCCCccE
Q psy3125 88 RLSAGPLLNFAFP--DLLTTNIYTYTGDARFSVIHP-----Q-----NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154 (163)
Q Consensus 88 ~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~ 154 (163)
.+..+..+.+.|. ..+.+.+.|++++..+.-... . ......|.|.+++.+|+|.|+|.| |..|..+.
T Consensus 14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred EEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 3444555666664 445668899988765431110 0 112357999999999999999999 99999999
Q ss_pred EEEEEEe
Q psy3125 155 AIMLNVD 161 (163)
Q Consensus 155 ~~~L~V~ 161 (163)
++.|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 9999886
No 158
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.00 E-value=2.6e-09 Score=60.69 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred EEEecC--CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 95 LNFAFP--DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 95 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+.+.|. ..+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|..+.++.|.|
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 345553 3455678888776533211000 001224889999999999999999 99999999999976
No 159
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.99 E-value=7.8e-10 Score=62.75 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=43.1
Q ss_pred CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 102 LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
.+.+.+.|++.+..+.... ........|.|.+++.+|+|.|+|.| |..|..+..+.|.|+
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 10 LPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred ecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 3445678877765332110 01122346999999999999999999 999999999999884
No 160
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.99 E-value=2.6e-09 Score=62.94 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=38.9
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+..+.|.|.| ++..+..+ .+|+.+.. ..|.|.+++.+|+|.|+|.+...
T Consensus 16 L~C~~~~~~~~i~W~~--ng~~i~~~------~~r~~~~~------~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 16 LKCSPKSNLARVVWKF--DGKVLTPE------SAKYLLYR------DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEECCCCCCeEEEEE--CCEECCCC------CceEEEEC------CcEEEeCCCHHHCEEEEEEEEec
Confidence 6799865338999998 44333211 24665542 35999999999999999999543
No 161
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.98 E-value=1.5e-08 Score=62.65 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=52.2
Q ss_pred CceEEecCC-------------CcEEEEEecC---CeeEE-ecceE-ec--CCCeEEEeccC-CCCeEEEEEcccCcCCC
Q psy3125 1 MACTVMGLG-------------RPVSWMRKRD---LHILT-TNIYT-YT--GDARFSVIHPQ-NSDEWNMKIDYAQKRDA 59 (163)
Q Consensus 1 l~C~~~~~~-------------~~v~W~k~~~---~~~~~-~~~~~-~~--~~~r~~~~~~~-~~~~~~L~i~~v~~~D~ 59 (163)
|+|.+.... +.|.|+|... ..++. .++.. +. ..+|+++...+ ..++.+|.|.+++.+|+
T Consensus 7 LpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDs 86 (112)
T cd05900 7 IPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSNDS 86 (112)
T ss_pred EeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccccC
Confidence 578877432 5899999632 22332 22221 11 12488886532 34689999999999999
Q ss_pred eeEEEEeeCC-CCeeEEEEEEEE
Q psy3125 60 GIYECQVNTE-PKMNMAIMLNVD 81 (163)
Q Consensus 60 G~Y~C~~~~~-~~~~~~~~l~V~ 81 (163)
|+|+|.+... ......+.|+|.
T Consensus 87 G~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 87 GTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred EEEEEEEecCCCCceeEEEEEEE
Confidence 9999999643 445555566654
No 162
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.98 E-value=2e-08 Score=62.22 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=53.0
Q ss_pred CceEEecCC------------CcEEEEEec---------CCeeEE-ecceEec---CCCeEEEeccC-CCCeEEEEEccc
Q psy3125 1 MACTVMGLG------------RPVSWMRKR---------DLHILT-TNIYTYT---GDARFSVIHPQ-NSDEWNMKIDYA 54 (163)
Q Consensus 1 l~C~~~~~~------------~~v~W~k~~---------~~~~~~-~~~~~~~---~~~r~~~~~~~-~~~~~~L~i~~v 54 (163)
|+|.+.-.| ..|.|+|.. ...++. .++.... -.+|..+...+ ..++.+|.|.++
T Consensus 7 LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~~v 86 (117)
T cd05901 7 LPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIVKL 86 (117)
T ss_pred EeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEccc
Confidence 689888332 589999851 122332 2322221 23577776432 246899999999
Q ss_pred CcCCCeeEEEEee-CCCCeeEEEEEEEE
Q psy3125 55 QKRDAGIYECQVN-TEPKMNMAIMLNVD 81 (163)
Q Consensus 55 ~~~D~G~Y~C~~~-~~~~~~~~~~l~V~ 81 (163)
+.+|+|.|.|++. ........+.|+|.
T Consensus 87 ~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 87 RASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999994 34455666677765
No 163
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.98 E-value=2.5e-09 Score=61.44 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=44.7
Q ss_pred EecC--CCCceeEEEEeCCCeEEEecC-----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 97 FAFP--DLLTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
+.|. ..+.+.+.|++++........ .......|.|.+++.+|+|.|+|.| |..|..+..+.|.|.
T Consensus 3 l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred eEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 4453 344567888877642110000 0112236999999999999999999 989999999999883
No 164
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.98 E-value=1.2e-08 Score=61.06 Aligned_cols=48 Identities=27% Similarity=0.503 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEE
Q psy3125 112 GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160 (163)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V 160 (163)
.+.||.... .....++|+|++++.+|+|.|+|++...+..+..+++.|
T Consensus 48 ~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~~ 95 (95)
T cd05881 48 KDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTITV 95 (95)
T ss_pred CCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEEC
Confidence 456776654 235688999999999999999999977788777777764
No 165
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.97 E-value=4.1e-09 Score=61.01 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCCCceeEEEEeCCCeEEEec---------CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 100 PDLLTTNIYTYTGDARFSVIH---------PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
...+.+.+.|++++..+.-.. ......+.|.|.++..+|+|.|+|.| |..|.++.++.++.
T Consensus 8 ~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 8 KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 345667888998876442111 11123567999999999999999999 99999999888763
No 166
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.97 E-value=3.5e-09 Score=60.59 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=46.9
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|++.+......... ......|.|..+..+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 2 QRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 45666675 2355678887654433211100 012346999999999999999999 99999999988876
No 167
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.97 E-value=3.5e-09 Score=64.71 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=48.4
Q ss_pred CceEEecC-C-CcEEEEEecCC----eeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL----HILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~----~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+... + ..+.|+|.... .++..... .....+|+.+......+.++|.|.+++.+|+|.|.|.+...
T Consensus 11 L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 89 (105)
T cd00099 11 LSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLS 89 (105)
T ss_pred EEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 68999987 5 89999996431 12221111 11235688877654347899999999999999999999543
No 168
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.97 E-value=2.9e-09 Score=62.52 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.1
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
....|.|.+++.+|+|.|+|.| |..+..+.++.|.|
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 3567999999999999999999 88888888888876
No 169
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.96 E-value=1.6e-09 Score=62.58 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCCc--cEEEEEEEec
Q psy3125 102 LLTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM--NMAIMLNVDG 162 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~--~~~~~L~V~~ 162 (163)
.+.+.+.|++++..+..... .......|.|.+++++|+|.|+|.| |..|.. +..++|.|..
T Consensus 10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 10 HPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred cCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 34567888887654321110 0112346999999999999999999 888876 5677777753
No 170
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.96 E-value=2.7e-09 Score=63.66 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=50.7
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
..+..|..+.+.|.. . .+.+.|++++..+.... ........|.|.+++++|+|.|+|.| |..|. .+..+.|.|.
T Consensus 13 ~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V~ 91 (91)
T cd05740 13 QPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNVN 91 (91)
T ss_pred cccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEeC
Confidence 356677888888853 3 56777877654321100 00112346999999999999999999 88875 5668888873
No 171
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.96 E-value=1.7e-09 Score=62.62 Aligned_cols=57 Identities=21% Similarity=0.460 Sum_probs=39.9
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l 78 (163)
|.|.+.+.| ..+.|+| ++..+. . ...+|.|.++ .+|+|.|+|++.+. ..+..+.|
T Consensus 20 L~C~~~~~p~~~~~~W~k--ng~~l~---------------~----~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l 76 (78)
T cd05752 20 LTCNGFNSPEQNSTQWYH--NGKLLE---------------T----TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHL 76 (78)
T ss_pred EEEeCCCCCCCccEEEEE--CCEEee---------------c----cCCeEEEeec-ccCCEEeEEECCCC-cCCCCEEE
Confidence 689999977 5799998 333221 0 1335899999 99999999999543 44555555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 77 ~V 78 (78)
T cd05752 77 EV 78 (78)
T ss_pred eC
Confidence 43
No 172
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.96 E-value=1.6e-08 Score=60.81 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=29.0
Q ss_pred ceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V 160 (163)
..+.|.|++++.+|+|.|+|.+...+..+..+.|.|
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 456799999999999999999944345677777765
No 173
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.96 E-value=6.5e-09 Score=60.15 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred CCCceEeeCCCeEEEecCCCC---ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEE
Q psy3125 83 RGRGARLSAGPLLNFAFPDLL---TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLN 159 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~ 159 (163)
.|+...+..|..+.+.|.... ...+.|++++..+.. ....|.|.++ .+|+|.|+|.|.+ ...+..++|.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~-~~~S~~v~l~ 77 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQG-SSLSDPVHLE 77 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCC-CcCCCCEEEe
Confidence 455677889999999997532 245889998765421 2345999999 9999999999933 3777777776
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 78 V 78 (78)
T cd05752 78 V 78 (78)
T ss_pred C
Confidence 5
No 174
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.96 E-value=5.9e-09 Score=64.31 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=51.8
Q ss_pred CceEEe-cCC-CcEEEEEecC----CeeE-Ee---cceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRD----LHIL-TT---NIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~----~~~~-~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|... ... ..+.|++... ..++ .. ..... ...+|+.+......++++|.|.+++.+|+|.|.|++..
T Consensus 21 L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~ 100 (114)
T PF07686_consen 21 LPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVST 100 (114)
T ss_dssp EEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEE
T ss_pred EEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEE
Confidence 579999 445 8999999543 1122 11 11111 12457777765556799999999999999999999954
Q ss_pred CC--CeeEEEEEEE
Q psy3125 69 EP--KMNMAIMLNV 80 (163)
Q Consensus 69 ~~--~~~~~~~l~V 80 (163)
.. .....+.|.|
T Consensus 101 ~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 101 SNEQSFGNGTKLTV 114 (114)
T ss_dssp SSEEEEEEEEEEEE
T ss_pred CCCCEECCcEEEEC
Confidence 32 2334444544
No 175
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.95 E-value=2.7e-09 Score=63.67 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=42.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEe-----cceEec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTT-----NIYTYT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~-----~~~~~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.+...+ ..|.|+|.+.+..... +..... ..+|+.+.. +++|.|.+++.+|+|.|+|++....
T Consensus 6 L~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-----~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 6 LPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-----NGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred EEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-----CceEEEccCCchhcEEEEEEEEcCC
Confidence 578877766 8999998654322110 011111 134555543 4889999999999999999996543
No 176
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.95 E-value=7.4e-09 Score=60.92 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=54.8
Q ss_pred CCceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
+....+..|..+.+.|.. .+...+.|++.+..+.. ........|.|.+++.+|+|.|+|.| |..|..+..+.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 445677889999999964 24567899888754211 11122456999999999999999999 888888888776
No 177
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.94 E-value=7.7e-09 Score=60.16 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=46.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCC---eEEEecCC------CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDA---RFSVIHPQ------NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|.. .+.+.+.|++... .+.+.... ......|.|.+++.+|+|.|+|.| |..|..+..+.|.|
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred CcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 445666653 3445677876521 22211110 012356999999999999999999 99999999999976
No 178
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.94 E-value=4.7e-09 Score=61.79 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=52.6
Q ss_pred CceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecCC--CCceEEEEecccCcCCCeeEEEEc-CCCCCc-cEEEE
Q psy3125 85 RGARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQKRDAGIYECQV-NTEPKM-NMAIM 157 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~~~~ 157 (163)
....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.| |..|.. +..+.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 34567788889999953 345678898876543221100 011346999999999999999999 877764 66777
Q ss_pred EEE
Q psy3125 158 LNV 160 (163)
Q Consensus 158 L~V 160 (163)
|.|
T Consensus 84 l~V 86 (86)
T cd05724 84 LSV 86 (86)
T ss_pred EEC
Confidence 765
No 179
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.93 E-value=6.5e-09 Score=60.62 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=43.7
Q ss_pred CCCceeEEEEeCCCeEEEec--------C---CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 101 DLLTTNIYTYTGDARFSVIH--------P---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.+.|++++..+.... . .......|.|.+++..|+|.|+|.| |..|.++..+.|..
T Consensus 9 G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 44567788888765332111 0 1123456999999999999999999 99999999888763
No 180
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.93 E-value=1.5e-08 Score=63.20 Aligned_cols=70 Identities=23% Similarity=0.393 Sum_probs=44.7
Q ss_pred CceEEecCC-----CcEEEEEecC--C---eeEEecceE-ec-CC----CeEEEeccCCCCeEEEEEcccCcCCCeeEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKRD--L---HILTTNIYT-YT-GD----ARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 64 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~~--~---~~~~~~~~~-~~-~~----~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 64 (163)
|+|.+.... ..|.|++... . .++...... .. .. +|+.+......++.+|.|.+++.+|+|.|.|
T Consensus 18 L~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 97 (116)
T cd05715 18 LKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTC 97 (116)
T ss_pred EEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCEEEEE
Confidence 689887542 4699987532 1 122222111 11 12 4566655444568999999999999999999
Q ss_pred EeeCCC
Q psy3125 65 QVNTEP 70 (163)
Q Consensus 65 ~~~~~~ 70 (163)
++.+.+
T Consensus 98 ~v~~~~ 103 (116)
T cd05715 98 DVKNPP 103 (116)
T ss_pred EEEeCC
Confidence 996543
No 181
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.92 E-value=2.1e-09 Score=60.72 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=42.4
Q ss_pred EecC--CCCceeEEEEeCCCeEEEecCC-CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 97 FAFP--DLLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
+.|. ..+.+.+.|++++..+...... -.....|.|.+++.+|+|.|+|.| |..|..+.++.|.
T Consensus 3 L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 3 IPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred eEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 4454 2344567888765432211100 011346999999999999999999 9999998888773
No 182
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.90 E-value=5.4e-09 Score=62.44 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=47.8
Q ss_pred eeCCCeEEEecCCC-------CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 89 LSAGPLLNFAFPDL-------LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 89 v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+..|....+.|+.. +.+.+.|++++..+............|.|.++..+|+|.|+|.| +..+.....+++.+
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 44566677777532 35688999887644311111013356999999999999999999 87776666555444
No 183
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.89 E-value=9.6e-09 Score=61.25 Aligned_cols=55 Identities=25% Similarity=0.538 Sum_probs=38.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCc-CCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK-RDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~~~~ 68 (163)
|.|.+.+.| +.|.|+| +...+.. ....++.+. +..|.|.++.. +|+|.|+|.+.+
T Consensus 24 l~C~~~g~p~p~i~W~k--~~~~l~~-----~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 24 LNCRARGSPPPTYRWLM--NGTEIDD-----EPDSRYSLV------GGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred EEEeeeEcCCCEEEEEE--CCEECCC-----CCCCCEEEE------CCEEEEecCCccCCCEEEEEEEEc
Confidence 679999999 9999998 3322211 123345443 23689998875 999999999954
No 184
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.89 E-value=9.6e-09 Score=62.08 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=47.6
Q ss_pred CceEEecC-C-CcEEEEEecCC---eeEEe-cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL---HILTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~---~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|+|.+... . ..+.|+|.... .++.. +.......+|+.+......+.++|.|.+++.+|+|.|.|.+...+
T Consensus 12 l~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 12 IPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 57988763 4 78899986432 22211 111112357888765445678999999999999999999995543
No 185
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.88 E-value=1.4e-08 Score=56.33 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=35.6
Q ss_pred CceEE-ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTV-MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~-~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+ .+.+ ..+.|+|.+....... .............+|.|.+++.+|+|.|+|.|
T Consensus 6 L~C~~~~~~~~~~~~W~~~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 6 LTCSVSSGPPPTTVTWSKNGQSLPEGS---------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEESSSTSEEEEEETTTTTSEEE---------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEeecCCCCCCcEEEEEECCccccCcc---------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 67999 5556 9999998543322211 11111100111124999999999999999986
No 186
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.88 E-value=3.8e-09 Score=59.84 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=42.7
Q ss_pred CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.+.+.|++++..+.... .......|.|.++..+|+|.|+|.| |..|..+...++.|.
T Consensus 9 G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 9 GYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 34567788988876443111 1112346999999999999999999 988877776666654
No 187
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.88 E-value=1.1e-08 Score=58.89 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=41.8
Q ss_pred EEecCC---CCceeEEEEeCCCeEEEecC--------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 96 NFAFPD---LLTTNIYTYTGDARFSVIHP--------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 96 ~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.+.|.. .+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+.++.
T Consensus 2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 355542 24457778887664432111 1123467999999999999999999 88887776654
No 188
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.87 E-value=3.2e-08 Score=59.70 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEec---------CCCCceEEEEe--cccCcCCCeeEEEEc-CC
Q psy3125 83 RGRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIH---------PQNSDEWNMKI--DYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~i--~~v~~~D~G~Y~C~a-~~ 148 (163)
.+....+..|..+.+.|.. .+.+.+.|++++..+.... ...+....+.| ..+..+|+|.|+|.| |.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~ 86 (100)
T cd07693 7 HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNS 86 (100)
T ss_pred cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcc
Confidence 3445677788899999964 4556789998865443210 01111222333 334789999999999 88
Q ss_pred CCC-ccEEEEEEE
Q psy3125 149 EPK-MNMAIMLNV 160 (163)
Q Consensus 149 ~~~-~~~~~~L~V 160 (163)
.|. .+..+.|.|
T Consensus 87 ~G~~~s~~~~l~v 99 (100)
T cd07693 87 LGEAVSRNASLEV 99 (100)
T ss_pred ccceecceEEEEe
Confidence 888 788888887
No 189
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.87 E-value=1.4e-08 Score=59.92 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=45.1
Q ss_pred CceEEecCC---CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEE
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~ 76 (163)
|.|.+.+.+ ..+.|...+....... .....|..... ......+|.|.+++.+|+|.|+|.+.+ .+.....+
T Consensus 6 L~C~~~~~~~~~~~~~W~~p~~~~~~~~----~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 6 LNCTARTELNVGIDFQWDYPGKKEQRAK----SVSENRRSLQE-HTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred EEEEEEeCCCCcEEEEEEcCCcccccce----ecccccccccc-cceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 679998765 5779976332211000 00011111110 112356799999999999999999954 44455666
Q ss_pred EEEEEc
Q psy3125 77 MLNVDD 82 (163)
Q Consensus 77 ~l~V~~ 82 (163)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 677653
No 190
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.87 E-value=9.2e-09 Score=61.05 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=52.3
Q ss_pred ceEeeCCCeEEEecCC-CCceeEEEEeCCCeEEEec----CCCCceEEEEecccCcCCCeeEEEEc-C-CCCCccEEEEE
Q psy3125 86 GARLSAGPLLNFAFPD-LLTTNIYTYTGDARFSVIH----PQNSDEWNMKIDYAQKRDAGIYECQV-N-TEPKMNMAIML 158 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L 158 (163)
...+..|..+.+.|.. .+...+.|++++....... +.......|.|.+++.+|+|.|+|.| + ..+..+..+.|
T Consensus 5 ~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 5 VVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred EEEEECCCcEEEEEeCCCCCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 3456778889999964 3445789998875432210 00111234999999999999999999 4 34566777888
Q ss_pred EEec
Q psy3125 159 NVDG 162 (163)
Q Consensus 159 ~V~~ 162 (163)
+|..
T Consensus 85 ~V~~ 88 (89)
T cd04979 85 NVLE 88 (89)
T ss_pred EEec
Confidence 8753
No 191
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.86 E-value=1.3e-08 Score=59.64 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=44.8
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCCCee--EEEEE
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN--MAIML 78 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~--~~~~l 78 (163)
|+|...+..+.|.|++.+ .. +..+.|+..... .|.|..++.+|+|.|.|.+...+... ....|
T Consensus 16 L~C~~~s~~A~v~W~~ng--~~-------l~~~~r~~~~~~------GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l 80 (85)
T cd05872 16 LPCQLRSNLASPVWLFNG--TP-------LNAQFSYRVGTD------GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSL 80 (85)
T ss_pred EECCCCCCCccEEEEECC--cc-------cCCCcceEEeCC------CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEE
Confidence 578888877999999832 21 234566665532 28899999999999999995443333 34445
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.|.
T Consensus 81 ~v~ 83 (85)
T cd05872 81 NVV 83 (85)
T ss_pred EEe
Confidence 443
No 192
>smart00409 IG Immunoglobulin.
Probab=98.86 E-value=5.1e-08 Score=56.48 Aligned_cols=70 Identities=23% Similarity=0.471 Sum_probs=48.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.+ +.+.|++.+ ... .....++.+... ....+|.|.+++.+|+|.|.|.+.. .......+.|
T Consensus 14 l~C~~~~~~~~~~~W~~~~-~~~-------v~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 14 LSCEVSGSPPPEVTWYKQG-GKL-------LAESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEEEccCCCCeEEEEECC-CEE-------cCCCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 579999987 999999841 221 123556666652 2267899999999999999999953 3333444555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 54
No 193
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.86 E-value=5.1e-08 Score=56.48 Aligned_cols=70 Identities=23% Similarity=0.471 Sum_probs=48.3
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
|.|.+.+.+ +.+.|++.+ ... .....++.+... ....+|.|.+++.+|+|.|.|.+.. .......+.|
T Consensus 14 l~C~~~~~~~~~~~W~~~~-~~~-------v~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 14 LSCEVSGSPPPEVTWYKQG-GKL-------LAESGRFSVSRS--GSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEEEccCCCCeEEEEECC-CEE-------cCCCCcEEEEEc--CCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 579999987 999999841 221 123556666652 2267899999999999999999953 3333444555
Q ss_pred EE
Q psy3125 79 NV 80 (163)
Q Consensus 79 ~V 80 (163)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 54
No 194
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.86 E-value=2.3e-08 Score=61.42 Aligned_cols=67 Identities=22% Similarity=0.495 Sum_probs=45.4
Q ss_pred CceEEecCC--CcEEEEEecCC---e-e---EEe---cceEec---CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDL---H-I---LTT---NIYTYT---GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~---~-~---~~~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|.|.+.+.. ..+.|+|+..+ . + +.. +..... ..+||.+....+.+.+.|.|.+++.+|+|.|.|.
T Consensus 11 L~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa 90 (107)
T cd07700 11 LSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCM 90 (107)
T ss_pred EEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEEEEEe
Confidence 679998744 78999997543 1 1 111 111111 1468877544445688999999999999999999
Q ss_pred ee
Q psy3125 66 VN 67 (163)
Q Consensus 66 ~~ 67 (163)
..
T Consensus 91 ~~ 92 (107)
T cd07700 91 TV 92 (107)
T ss_pred Ec
Confidence 84
No 195
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.86 E-value=1.3e-08 Score=62.86 Aligned_cols=66 Identities=23% Similarity=0.440 Sum_probs=45.4
Q ss_pred CceEEecCC-CcEEEEEecCC---eeE-Eecc--eEe---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---HIL-TTNI--YTY---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~~~-~~~~--~~~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+ + ..|.|+|+..+ ..+ .... ... ...+||.+.... ...++|.|.+++.+|+|.|.|.+..
T Consensus 18 l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 18 LRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred EEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCChhhCEEEEEEeeC
Confidence 6899988 7 89999996432 122 1111 111 124688876532 3578999999999999999999954
No 196
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.85 E-value=2.4e-08 Score=58.54 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=51.2
Q ss_pred ceEeeCCCeEEEecCCC---CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEE
Q psy3125 86 GARLSAGPLLNFAFPDL---LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNV 160 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V 160 (163)
...+..|..+.+.|... ......|++++..+.. ......|.|.+++.+|+|.|+|.| +..+ ..|..+.|.|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 34678899999999852 3456888887754421 123456999999999999999999 5553 4566666654
No 197
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.85 E-value=2.8e-08 Score=60.05 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=45.8
Q ss_pred CceEEecC--C-CcEEEEEecCC---e-eEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G-RPVSWMRKRDL---H-ILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~-~~v~W~k~~~~---~-~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. . ..+.|+|+..+ . ++...... ....+||.+.. ..+..+|.|.+++.+|+|+|.|.+..
T Consensus 11 l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 11 ITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEEEEEcc
Confidence 57999876 5 78999997532 1 22211111 11246888765 34688999999999999999999853
No 198
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.85 E-value=1.4e-08 Score=63.31 Aligned_cols=68 Identities=18% Similarity=0.373 Sum_probs=46.8
Q ss_pred CceEEec--CC-CcEEEEEecCCe----eEEe-cc-eE-e---cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMG--LG-RPVSWMRKRDLH----ILTT-NI-YT-Y---TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~--~~-~~v~W~k~~~~~----~~~~-~~-~~-~---~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+ .+ ..|.|+|...+. ++.. .. .. . ...+||.+........++|.|.+++.+|+|.|.|.+.
T Consensus 18 l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~ 97 (116)
T cd04982 18 ISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYW 97 (116)
T ss_pred EEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEe
Confidence 6799988 55 899999964321 1211 11 11 1 1246888876433368999999999999999999995
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 98 ~ 98 (116)
T cd04982 98 E 98 (116)
T ss_pred c
Confidence 3
No 199
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.85 E-value=3.7e-08 Score=61.31 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=44.1
Q ss_pred CceEEecCC-----CcEEEEEec---CC--eeEEecceE-ecCC----CeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGLG-----RPVSWMRKR---DL--HILTTNIYT-YTGD----ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~~-----~~v~W~k~~---~~--~~~~~~~~~-~~~~----~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|+|.+...+ ..|.|++.. .. .++...... .... +|+.+......++.+|.|.+++.+|+|.|.|.
T Consensus 18 L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (115)
T cd05880 18 LKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNGTYTCQ 97 (115)
T ss_pred EEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCEEEEEE
Confidence 689987543 359997632 11 233222211 1122 45555544445688999999999999999999
Q ss_pred eeCCC
Q psy3125 66 VNTEP 70 (163)
Q Consensus 66 ~~~~~ 70 (163)
+.+.+
T Consensus 98 v~~~~ 102 (115)
T cd05880 98 VKNPP 102 (115)
T ss_pred EEeCC
Confidence 96533
No 200
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.84 E-value=5.5e-08 Score=57.12 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=29.6
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V~ 161 (163)
...|.|.+++.+|+|.|.|.| +... ..+.++.|.|-
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 567999999999999999999 6554 56777777763
No 201
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.84 E-value=1.5e-08 Score=58.82 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=29.6
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCCCc-cEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEPKM-NMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~~~-~~~~~L~V 160 (163)
..|.|.++..+|+|.|+|.| |..|.. +..+.|.|
T Consensus 44 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 44 GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 56999999999999999999 887766 77888875
No 202
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.84 E-value=1.7e-08 Score=57.83 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCceeEEEEeCCCeEEEecC-------CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEE
Q psy3125 102 LLTTNIYTYTGDARFSVIHP-------QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~ 157 (163)
.+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|..+..+.
T Consensus 11 ~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 11 YPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 34567788877654432211 1123467999999999999999999 88888776654
No 203
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.83 E-value=1.3e-08 Score=57.53 Aligned_cols=64 Identities=6% Similarity=0.075 Sum_probs=43.8
Q ss_pred CeEEEecC--CCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+.+.|. ..+.+.+.|++++..+............|.|.+++ |+|.|+|.| |..|..+.++.|
T Consensus 2 ~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 2 GSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 45677775 35667888988875432111111123469999974 899999999 999988888776
No 204
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.83 E-value=1.5e-08 Score=63.19 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=47.4
Q ss_pred CceEEecC-C-CcEEEEEecCC---eeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDL---HILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~---~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|.+... . ..|.|+|...+ ..+....... ...+||.+......++++|.|.+++.+|+|.|.|.+..
T Consensus 19 L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 19 LNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 68998865 4 78999996432 1222111111 22579988754445689999999999999999999964
No 205
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.81 E-value=5.6e-08 Score=59.93 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=50.5
Q ss_pred CCeEEEecCC--CCceeEEEEeCCCeE-------EEec--CCCCceEEEEecccC-cCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 92 GPLLNFAFPD--LLTTNIYTYTGDARF-------SVIH--PQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
|..+.+.|.. .+.+.+.|++++..+ .... ........|.|.++. .+|+|.|+|.| |..|.....+.|
T Consensus 23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence 4556777753 445677887765432 1111 111124679999997 69999999999 999999999999
Q ss_pred EEecC
Q psy3125 159 NVDGK 163 (163)
Q Consensus 159 ~V~~~ 163 (163)
.|..+
T Consensus 103 ~~~~~ 107 (109)
T cd05773 103 VSTSR 107 (109)
T ss_pred EecCC
Confidence 99764
No 206
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.81 E-value=1.1e-08 Score=59.17 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=43.3
Q ss_pred CeEEEecC--CCCceeEEEEeCCC------eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 93 PLLNFAFP--DLLTTNIYTYTGDA------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..+.+.|. ..+.+.+.|+.++. ++.+.. ......|.|++++.+|+|.|+|.| |..|.....+.+.+
T Consensus 2 ~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 2 ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 34555554 23445677766543 232222 123567999999999999999999 88887776665544
No 207
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.81 E-value=1.1e-08 Score=58.63 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred CceeEEEEeCCCeEEEecC---CCCceEEEEecccCcCCCeeEEEEc-CCCCC-ccEEEEEEEe
Q psy3125 103 LTTNIYTYTGDARFSVIHP---QNSDEWNMKIDYAQKRDAGIYECQV-NTEPK-MNMAIMLNVD 161 (163)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~-~~~~~~L~V~ 161 (163)
+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|. .+..+.|.|+
T Consensus 11 P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 11 PDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred cCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4457788876543221000 0012345999999999999999999 88776 5788888874
No 208
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.80 E-value=1.8e-08 Score=57.91 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred CceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 103 LTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
+.+.+.|++++..+..... .......|.|.+++.+|+|.|+|.| |..|.....+.|.|+.
T Consensus 11 P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 11 PLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 3456777766543221100 0112346999999999999999999 9999999999999974
No 209
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.79 E-value=5.1e-08 Score=59.77 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=45.0
Q ss_pred CceEEecCC--CcEEEEEecC---CeeEEecceEe--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRD---LHILTTNIYTY--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~---~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.. ..+.|+|+.. ...+....... ...+||.+.. ....++|.|.+++.+|+|.|.|.+..
T Consensus 20 L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 20 ISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCChHHCEEEEEEEeC
Confidence 679998665 7899999642 22222221111 1235787754 34678999999999999999999843
No 210
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.79 E-value=3e-08 Score=68.80 Aligned_cols=55 Identities=20% Similarity=0.452 Sum_probs=39.7
Q ss_pred CceEEe-----cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-----GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-----~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+. +.| +.|.|+| +...+ ..++|+.+.. ++.+|.|.+++.+|+|.|+|.+..
T Consensus 149 L~C~~~~~~~~~~p~p~I~WyK--ng~~l-------~~~~r~~~~~----~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 149 LHCYGTDGISSTFKDYTLTWYK--NGNIV-------LYTDRIQLRN----NNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred EEeeCCCCccccCCCceEEEEE--CCEEC-------CCCCCEEEeC----CCCEEEECcCCHHhCEEEEEEEEE
Confidence 578876 346 8999998 32222 2345666553 245799999999999999999943
No 211
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.79 E-value=1.2e-08 Score=60.07 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=41.6
Q ss_pred ceEeeCCCeEEEecCCC-CceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 86 GARLSAGPLLNFAFPDL-LTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...+..|..+.+.|... +...+.|.+++..+.... ........|.|.+++.+|+|.|+|.|
T Consensus 5 ~~~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a 67 (87)
T cd05873 5 QRTFKLGNNAELKCSPKSNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLS 67 (87)
T ss_pred eEEEECCCCEEEEEECCCCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEE
Confidence 45677788899999743 335688888865432110 00011234999999999999999999
No 212
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.77 E-value=4.7e-08 Score=58.35 Aligned_cols=43 Identities=33% Similarity=0.699 Sum_probs=30.1
Q ss_pred CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
+.|.|+| +...+. .+ +..+. .+.+|.|.++..+|+|.|+|.+.
T Consensus 30 p~i~Wyk--~~~~i~-------~~-~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 30 PPVQWYK--DCKLLE-------GD-RKRFV-----KGSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred CcEEEeE--CCEECC-------CC-ccEEe-----cCCEEEEeeCChhhCEEEEEEEE
Confidence 7999998 333322 11 22222 24579999999999999999994
No 213
>PHA03376 BARF1; Provisional
Probab=98.77 E-value=2.7e-07 Score=61.06 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=45.8
Q ss_pred CceEEecC---C-CcEEEEEe---cCCeeEEecce-----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL---G-RPVSWMRK---RDLHILTTNIY-----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~---~-~~v~W~k~---~~~~~~~~~~~-----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|+|..+.. + ..|.|+|. +...++..... ++...+|+.+..+ .++.+|.|.+++.+|.|+|+|.+..
T Consensus 31 LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~--~gnvsLvI~~l~lSDdGtY~C~fQk 108 (221)
T PHA03376 31 LTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS--ANTFFLVVTAANISHDGNYLCRMKL 108 (221)
T ss_pred EEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEec--CCeEEEEEEeeeecCCceEEEEEEc
Confidence 56777622 2 78999994 23334432221 2334567777653 4899999999999999999999964
Q ss_pred C
Q psy3125 69 E 69 (163)
Q Consensus 69 ~ 69 (163)
.
T Consensus 109 g 109 (221)
T PHA03376 109 G 109 (221)
T ss_pred C
Confidence 3
No 214
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.77 E-value=5.2e-08 Score=58.51 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCceEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCC---CCceEEEEeccc-----CcCCCeeEEEEc-CC-CCC
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYA-----QKRDAGIYECQV-NT-EPK 151 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v-----~~~D~G~Y~C~a-~~-~~~ 151 (163)
|....+..|..+.+.|.. .+.+.+.|++++..+...... ......|.|.++ .+.|+|.|+|.| |. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 334556678888898864 456788999877644321110 001234677666 689999999999 88 776
Q ss_pred c-cEEEEEEE
Q psy3125 152 M-NMAIMLNV 160 (163)
Q Consensus 152 ~-~~~~~L~V 160 (163)
. ++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 6 77888875
No 215
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.76 E-value=4.8e-08 Score=59.74 Aligned_cols=65 Identities=22% Similarity=0.418 Sum_probs=45.0
Q ss_pred CceEEecCC-CcEEEEEecCC---e---eEEecc--eE-ec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG-RPVSWMRKRDL---H---ILTTNI--YT-YT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~---~---~~~~~~--~~-~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.... ..+.|+|+..+ . ++.... .. .. ..+||.+.. ..+.++|.|.+++.+|+|+|.|.+
T Consensus 11 L~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~sDsgtY~Ca~ 88 (104)
T cd05720 11 LKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKENEGYYFCSV 88 (104)
T ss_pred EEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHHHCEEEEEEE
Confidence 679987666 88999997543 1 111111 11 11 146788754 347889999999999999999998
Q ss_pred e
Q psy3125 67 N 67 (163)
Q Consensus 67 ~ 67 (163)
.
T Consensus 89 ~ 89 (104)
T cd05720 89 A 89 (104)
T ss_pred c
Confidence 5
No 216
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.76 E-value=8.7e-08 Score=57.74 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=48.2
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEecc--CCCCeEEEEEcccCcCC-CeeEEEEe-eCCCCeeE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRD-AGIYECQV-NTEPKMNM 74 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~i~~v~~~D-~G~Y~C~~-~~~~~~~~ 74 (163)
|.|.+.+.| ..|.|...+ ..+.. ..++||.+... ......+|.|.++.++| .|.|.|.+ |..+....
T Consensus 21 L~C~~~s~P~P~~i~W~w~~--~~i~~-----~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~ 93 (98)
T cd05898 21 VKCFIGSTPPPDRIAWAWKE--NVLES-----GTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTA 93 (98)
T ss_pred EEEEEccCCCCcEEEEEEcc--ccccC-----CCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceE
Confidence 679998777 567888632 22211 12568888753 22457789999998877 79999999 55555555
Q ss_pred EEEE
Q psy3125 75 AIML 78 (163)
Q Consensus 75 ~~~l 78 (163)
.+.|
T Consensus 94 ~i~L 97 (98)
T cd05898 94 IIQL 97 (98)
T ss_pred EEEe
Confidence 5444
No 217
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.76 E-value=1.1e-07 Score=55.67 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=49.7
Q ss_pred eeCCCeEEEecCC--CCceeEEEEeCCCeEEEe-----cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 89 LSAGPLLNFAFPD--LLTTNIYTYTGDARFSVI-----HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 89 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
+..|..+.+.|.. .+.+.+.|++++..+... .......+.|.|.++..+|+|.|.|.| |..|..+.++.|+|
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 4456667777753 334567888775433211 011123457999999999999999999 88888888888875
No 218
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.75 E-value=4.5e-08 Score=57.73 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.8
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.|.|.+++.+|+|.|+|.| |..+....++.|.|.
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 3567999999999999999999 878888888888885
No 219
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.74 E-value=1.4e-08 Score=57.70 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCCceeEEEEeCCCeEEEe-cCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 101 DLLTTNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
..+.+.+.|++++..+... .........|.|.+++.+|+|.|+|.| +..........+
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 9 AFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred EcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 3455678888876432211 000012236999999999999999999 665544444333
No 220
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.74 E-value=6.7e-08 Score=60.55 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=45.0
Q ss_pred CceEEecC------C-CcEEEEEecCC----eeEEecceE----ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEE
Q psy3125 1 MACTVMGL------G-RPVSWMRKRDL----HILTTNIYT----YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65 (163)
Q Consensus 1 l~C~~~~~------~-~~v~W~k~~~~----~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 65 (163)
|+|..... . ..+.|+|++.. .+....... ....+||.+..+...++++|.|.+++.+|+|+|.|+
T Consensus 19 L~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~ 98 (119)
T cd05712 19 IPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFR 98 (119)
T ss_pred EEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCeEEEEE
Confidence 57877632 2 45899996533 222111111 112368888655456789999999999999999999
Q ss_pred eeC
Q psy3125 66 VNT 68 (163)
Q Consensus 66 ~~~ 68 (163)
+..
T Consensus 99 ~~~ 101 (119)
T cd05712 99 VEL 101 (119)
T ss_pred EEc
Confidence 843
No 221
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.73 E-value=3e-08 Score=58.28 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=39.5
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.+.+ .| +.|.|+|.+.. + + .+.. ..+.+|.|.+++.+|+|.|.|.+. ..+.....+
T Consensus 21 L~C~~~~~~~~~~i~W~~~~~~-~---------~-~~~~------~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 21 FICRAKSKSPAYTLVWTRVGGG-L---------P-SRAM------DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EEEEcCCCCCCcEEEEEECCCc-C---------C-Cccc------ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 6899975 57 89999984322 1 0 1111 124579999999999999999994 344444433
No 222
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.72 E-value=5.1e-08 Score=53.23 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=37.2
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+.+ +.+.|+| +...+ . .+.... .....|.|.+++.+|+|.|+|++.+
T Consensus 7 l~C~~~~~~~~~v~W~~--~~~~~-------~--~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 7 LTCPAEGDPVPNITWLK--DGKPL-------P--ESNRLS----ASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred EEeeCccCCCCeEEEEE--CCEEC-------C--CCCEEe----cCCcEEEEeeCCcccCEEEEEEEec
Confidence 579988888 8999998 22211 1 111111 2355799999999999999999954
No 223
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.70 E-value=1.4e-07 Score=57.73 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=38.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.|+.+.. ......+|+|++++.+|+|.|+|.+ +..+.....+.|.|+|
T Consensus 56 ~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 56 GRVFLRR-AHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEecC-CCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 3555533 2244677999999999999999999 7778889999999987
No 224
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.69 E-value=5.6e-07 Score=54.32 Aligned_cols=73 Identities=15% Similarity=0.023 Sum_probs=50.8
Q ss_pred ceEeeCCCeEEEecCC--CCce-eEEEEeCCC--------eEEEecC--CCCceEEEEecccCcC-CCeeEEEEc-CCCC
Q psy3125 86 GARLSAGPLLNFAFPD--LLTT-NIYTYTGDA--------RFSVIHP--QNSDEWNMKIDYAQKR-DAGIYECQV-NTEP 150 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~--------~~~~~~~--~~~~~~~L~i~~v~~~-D~G~Y~C~a-~~~~ 150 (163)
...+..|..+.+.|.. .+.+ .+.|..++. ++.+... .......|+|.+++.+ |+|.|.|.| |..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 3456678888898864 2344 477876653 3333221 1123457999999995 599999999 9999
Q ss_pred CccEEEEE
Q psy3125 151 KMNMAIML 158 (163)
Q Consensus 151 ~~~~~~~L 158 (163)
.....+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 99988877
No 225
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.67 E-value=1.8e-07 Score=56.00 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=45.1
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEec-CCCCceEEEEecccC-cCCCeeEEEEc-CCCCCc-cEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKM-NMAIMLN 159 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~-~~~~~L~ 159 (163)
..+.+.|.. .+.+.+.|++++..+.... ........|.|.++. .+|+|.|+|.| |..|.. ++.++|.
T Consensus 20 ~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 358888864 5677899998865442111 000112469999885 69999999999 888866 4466654
No 226
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.65 E-value=2.7e-07 Score=61.05 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=53.6
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEE-ecceEecC--CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---Ce
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILT-TNIYTYTG--DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KM 72 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~-~~~~~~~~--~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~ 72 (163)
|.|... +.. +.|.|+|.+...... ..+..+.. .+|+.+.. +...+.+|.|.+|+.+|+|.|.|.++..| ..
T Consensus 35 LsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~ 113 (189)
T PHA02987 35 ISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNE 113 (189)
T ss_pred EEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecCCCCCc
Confidence 578885 444 899999854322211 12222322 24776432 23457889999999999999999997654 44
Q ss_pred eEEEEEEEEcC
Q psy3125 73 NMAIMLNVDDR 83 (163)
Q Consensus 73 ~~~~~l~V~~~ 83 (163)
+..+-|.|..+
T Consensus 114 ~gt~CLtVt~~ 124 (189)
T PHA02987 114 KGVVCLNVTTD 124 (189)
T ss_pred eeEEEEEEEch
Confidence 56666777765
No 227
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.65 E-value=3.1e-08 Score=59.23 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=41.2
Q ss_pred CceE-EecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeC
Q psy3125 1 MACT-VMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNT 68 (163)
Q Consensus 1 l~C~-~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~ 68 (163)
|.|. ..+.| +.|.|++.. ... +..+.|+.+.. +++|.|.+|+.+|+| .|.|.+.+
T Consensus 23 L~C~pP~g~P~P~i~W~~~~-~~~-------i~~~~Ri~~~~-----~GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 23 LPCNPPKSAVPLRIYWMNSD-LLH-------ITQDERVSMGQ-----NGNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred EEecCCCCCCCCEEEEECCC-Ccc-------ccccccEEECC-----CceEEEEEEehhhCCCCeEEEEEc
Confidence 6797 68999 999999632 111 12356776553 478999999999999 79999954
No 228
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.65 E-value=5.8e-08 Score=56.87 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=39.9
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCCeeEEE
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~~~~~~ 76 (163)
|.|.+.+ .+ ..+.|+|. +..+. . ......|.|.+++.+|+|.|+|.+.+ .+..+..+
T Consensus 19 L~C~~~~~~~~~~~~w~k~--g~~~~---------------~--~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 19 LRCHGWKNKPVYKVTYYRD--GKAKK---------------Y--SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred EEeeCCCCCcceEEEEEEC--CeEcc---------------c--cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence 5799864 45 78999983 22111 0 11245699999999999999999943 23345555
Q ss_pred EEEE
Q psy3125 77 MLNV 80 (163)
Q Consensus 77 ~l~V 80 (163)
.|.|
T Consensus 80 ~i~~ 83 (83)
T cd05753 80 SITV 83 (83)
T ss_pred EEEC
Confidence 5543
No 229
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.64 E-value=2.5e-07 Score=53.89 Aligned_cols=49 Identities=10% Similarity=0.299 Sum_probs=33.9
Q ss_pred CceEEecCC-C-cEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG-R-PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~-~-~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|.| | .|.|+| ++..+.. ++. .....|.|.++ .|+|.|+|.+.+
T Consensus 18 l~C~a~G~P~P~~I~W~k--~g~~l~~---------~~~------~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 18 LTCQAVGPPEPVEILWWQ--GGSPLGD---------PPA------PSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred EEEEeeeecCCeEEEEEE--CCEECCC---------CCC------CCCCEEEEccc--cCCeEEEEEEEe
Confidence 689999999 8 699998 3332210 111 12346888887 488999999944
No 230
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.63 E-value=1.6e-07 Score=55.95 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=47.1
Q ss_pred eeCCCeEEEecCC-CCceeEEEEeCCCe--EE--E--ecCCCCceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEE
Q psy3125 89 LSAGPLLNFAFPD-LLTTNIYTYTGDAR--FS--V--IHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLN 159 (163)
Q Consensus 89 v~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~ 159 (163)
...|..+.+.|.. .+.+.+.|++.... .. . ..........|.|++++++|+|.|+|.| +..+.....+.|.
T Consensus 8 ~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~ 87 (91)
T cd05871 8 GVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLH 87 (91)
T ss_pred EecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEE
Confidence 4567778888853 33467888863221 00 0 0000011234999999999999999999 4556666788888
Q ss_pred Ee
Q psy3125 160 VD 161 (163)
Q Consensus 160 V~ 161 (163)
|.
T Consensus 88 v~ 89 (91)
T cd05871 88 VI 89 (91)
T ss_pred Ee
Confidence 85
No 231
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.63 E-value=3.5e-07 Score=56.21 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=26.0
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|+|.|.|.+
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 89 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL 89 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence 455554433446778999999999999999999
No 232
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.63 E-value=2e-07 Score=55.90 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCeEEEecC--CCCceeEEEEeCCCeEEEecC--CCCceEEEEecccC-cCCCeeEEEEc-CCCCCc-cEEEEE
Q psy3125 92 GPLLNFAFP--DLLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKM-NMAIML 158 (163)
Q Consensus 92 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~-~~~~~L 158 (163)
|..+.+.|. ..+.+.+.|++++..+..... .......|.|.++. .+|+|.|+|.| |..|.. ++.+.|
T Consensus 19 g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 19 EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 567888886 346678999987764431110 00122468999875 69999999999 888876 445554
No 233
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.61 E-value=6.2e-08 Score=58.05 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=38.1
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|... +.| +.+.|+|.+....+ ..+.|..+.. .+++|.+.+|+.+|+|.|.|.+.+
T Consensus 23 L~C~pP~g~P~p~~~W~k~~~~~~~-------~~d~r~~~~~----~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 23 LFCDPPPHYPDLSYRWLLNEFPNFI-------PEDGRRFVSQ----TNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred EeeCCCCCCCCCEEEEEECCccccc-------ccCCCeEEeC----CCCcEEEeecCHhhCceeEEEEEe
Confidence 567554 667 99999984221111 1233433332 356799999999999999999954
No 234
>smart00409 IG Immunoglobulin.
Probab=98.61 E-value=1.4e-06 Score=50.26 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=48.5
Q ss_pred eEeeCCCeEEEecCCC--CceeEEEEeC-------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 87 ARLSAGPLLNFAFPDL--LTTNIYTYTG-------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
..+..|..+.+.|... ....+.|+.. ..++....... ...|.|++++..|+|.|.|.+ +..+.....+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 3445566677777422 3456677776 33444333222 567999999999999999999 6766666667
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
No 235
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.61 E-value=1.4e-06 Score=50.26 Aligned_cols=72 Identities=19% Similarity=0.329 Sum_probs=48.5
Q ss_pred eEeeCCCeEEEecCCC--CceeEEEEeC-------CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEE
Q psy3125 87 ARLSAGPLLNFAFPDL--LTTNIYTYTG-------DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~ 156 (163)
..+..|..+.+.|... ....+.|+.. ..++....... ...|.|++++..|+|.|.|.+ +..+.....+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 3445566677777422 3456677776 33444333222 567999999999999999999 6766666667
Q ss_pred EEEE
Q psy3125 157 MLNV 160 (163)
Q Consensus 157 ~L~V 160 (163)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
No 236
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.60 E-value=4e-07 Score=54.56 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=44.9
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecCC--CCceEEEEecccC-cCCCeeEEEEc-CCCCCc-cEEEEEE
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHPQ--NSDEWNMKIDYAQ-KRDAGIYECQV-NTEPKM-NMAIMLN 159 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~-~~D~G~Y~C~a-~~~~~~-~~~~~L~ 159 (163)
..+.+.|.. .+.+.+.|++++..+...... ......|.|.++. ..|+|.|+|.| |..|.. ++.+.|+
T Consensus 20 ~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 20 EKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 468888864 456789999887654322100 0112458998765 69999999999 888866 4566664
No 237
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.60 E-value=6e-07 Score=52.33 Aligned_cols=60 Identities=17% Similarity=0.406 Sum_probs=36.5
Q ss_pred CceEEec-CC-CcEEEEEecCCeeEEecceE--ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMG-LG-RPVSWMRKRDLHILTTNIYT--YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~-~~-~~v~W~k~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+ .| +.|.|+| ++..+..+... ...++.+.. ....|.|.....+|.|.|+|++.+
T Consensus 4 L~C~v~g~~P~~~v~W~~--~g~~l~~~~~~~~~~~~~~~~~------~~s~L~i~~~~~~~~~~y~C~a~n 67 (82)
T cd05759 4 LTCRARGAKPAAEIIWFR--DGEVLDGATYSKELLKDGKRET------TVSTLPITPSDHDTGRTFTCRARN 67 (82)
T ss_pred EEEEEeCccCCCEEEEEE--CCEEccCceeeeeEecCCCeEE------EEEEEEEeCceecCCCEEEEEEcC
Confidence 6899997 57 8999998 44443322110 011111100 123578887778888999999954
No 238
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.59 E-value=2.1e-07 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEcccCcCCCeeEEEEeeC
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
...|.|..+..+|+|.|.|.+.+
T Consensus 69 ~~~Lwf~Pa~~eDSG~Y~C~~rN 91 (104)
T cd05896 69 EDSIWFRPAELQDSGLYTCVLRN 91 (104)
T ss_pred CCEEEEEeCChhhCeEEEEEECC
Confidence 34599999999999999999954
No 239
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.58 E-value=5.3e-07 Score=55.08 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEEEE
Q psy3125 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIMLN 79 (163)
Q Consensus 33 ~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~ 79 (163)
.+|..+.. +.+|.|++++.+|+|.|.|++.+.. .....+.|.
T Consensus 61 ~gR~~~~~-----ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 61 SGRETIYP-----NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcEEEeC-----CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 35666654 5689999999999999999995433 333444443
No 240
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.57 E-value=3.7e-07 Score=53.16 Aligned_cols=71 Identities=10% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCceEeeCCCeEEEecCC--CCce-eEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCcc-EEEEE
Q psy3125 84 GRGARLSAGPLLNFAFPD--LLTT-NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN-MAIML 158 (163)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~-~~~~L 158 (163)
+....+..|..+.+.|.. .+.+ .+.|++++..+.. ........|.|.++ .|+|.|.|.| |..|... +.++|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 445677889999999974 4556 6999998875432 12223456999887 4889999999 8887554 45554
No 241
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.56 E-value=9.5e-07 Score=53.47 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=33.3
Q ss_pred eEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 115 RFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
|+.+.. .......+|+|++++.+|+|.|+|.+ +..+..+..+.|.|
T Consensus 52 R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 52 RTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred eEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 555432 12234678999999999999999999 56566666667766
No 242
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.55 E-value=1.5e-07 Score=57.63 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=35.1
Q ss_pred CCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 123 NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 123 ~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
.....+|+|++++.+|+|.|+|.+ +..+.....+.|.|+|
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 345778999999999999999999 6667788999999986
No 243
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.53 E-value=9.9e-07 Score=54.54 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=37.8
Q ss_pred eEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 RFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+.+.. .......+|+|.+++.+|+|.|+|.+ ......+..+.|.|+|
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 666543 12345678999999999999999999 5557778888888887
No 244
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.52 E-value=4.1e-07 Score=54.96 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred EeeCCCeEEEecCCC-------------CceeEEEEeCCCeEEEec-------CCCCceEEEEecccCcCCCeeEEEEc-
Q psy3125 88 RLSAGPLLNFAFPDL-------------LTTNIYTYTGDARFSVIH-------PQNSDEWNMKIDYAQKRDAGIYECQV- 146 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a- 146 (163)
.+.+|+.+.+.|... ....+.|++++....... +.......|.|.++..+|+|.|+|++
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 344566677777641 123678888753222111 01112335999999999999999999
Q ss_pred CCCCCccEEEEEEE
Q psy3125 147 NTEPKMNMAIMLNV 160 (163)
Q Consensus 147 ~~~~~~~~~~~L~V 160 (163)
|........+.|.|
T Consensus 91 N~t~C~~~~i~l~V 104 (104)
T cd05896 91 NSTYCMKVSMSLTV 104 (104)
T ss_pred CCCcceEEEEEEEC
Confidence 77666666776665
No 245
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.50 E-value=1.3e-06 Score=54.46 Aligned_cols=68 Identities=19% Similarity=0.424 Sum_probs=44.6
Q ss_pred CceEEecCC---CcEEEEEecCCe---eEE-ec---ceE-e--cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG---RPVSWMRKRDLH---ILT-TN---IYT-Y--TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~---~~v~W~k~~~~~---~~~-~~---~~~-~--~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|...+.. ..+.|+|+..+. ++. .. ... . ...+||.+.........+|.|.+++.+|+|+|.|.+.
T Consensus 17 L~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~ 96 (117)
T cd04981 17 LSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARG 96 (117)
T ss_pred EEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEE
Confidence 579887543 679999975322 121 11 111 0 1236888875433456789999999999999999985
Q ss_pred C
Q psy3125 68 T 68 (163)
Q Consensus 68 ~ 68 (163)
.
T Consensus 97 ~ 97 (117)
T cd04981 97 L 97 (117)
T ss_pred c
Confidence 3
No 246
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.49 E-value=5.9e-07 Score=55.24 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=28.1
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CC-CCCccEEEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NT-EPKMNMAIMLNV 160 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~-~~~~~~~~~L~V 160 (163)
....+|.|++++.+|+|.|.|.+ .. .......+.|.|
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 44678999999999999999999 33 344455666655
No 247
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.49 E-value=1.6e-06 Score=52.20 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=46.2
Q ss_pred CceEEecCC-Cc-EEEEEecCCeeEEecceEecCCCeEEEecc-CCCCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEE
Q psy3125 1 MACTVMGLG-RP-VSWMRKRDLHILTTNIYTYTGDARFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~-~~-v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~ 76 (163)
|.|.++++| +. +.|.+.+. .+... .+..+..... .......|.|..+..+|.|.|+|.+. .....+..+
T Consensus 23 L~V~ieAYP~p~~~~W~~~~~--~l~~~-----~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF 95 (101)
T cd05860 23 LIVEYEAYPKPEHQQWIYMNR--TLTNT-----SDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTF 95 (101)
T ss_pred EEEEEEeCCCCeeeEEEcCCc--ccCcc-----ccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEE
Confidence 578999999 76 99998322 11100 0111111100 01123569999999999999999994 455667777
Q ss_pred EEEEE
Q psy3125 77 MLNVD 81 (163)
Q Consensus 77 ~l~V~ 81 (163)
.|.|.
T Consensus 96 ~l~v~ 100 (101)
T cd05860 96 NVYVN 100 (101)
T ss_pred EEEEe
Confidence 77764
No 248
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.49 E-value=5.1e-06 Score=50.06 Aligned_cols=71 Identities=15% Similarity=0.038 Sum_probs=47.1
Q ss_pred EeeCCCeEEEecCCC--C-ceeEEEEeC--------CCeEEEec--CCCCceEEEEecccCcCC-CeeEEEEc-CCCCCc
Q psy3125 88 RLSAGPLLNFAFPDL--L-TTNIYTYTG--------DARFSVIH--PQNSDEWNMKIDYAQKRD-AGIYECQV-NTEPKM 152 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~--~-~~~~~~~~~--------~~~~~~~~--~~~~~~~~L~i~~v~~~D-~G~Y~C~a-~~~~~~ 152 (163)
....|..+.+.|... + +..+.|... ..|+.+.. ......+.|.|.++.+.| .|.|.|.| |..|..
T Consensus 12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 344566666666431 1 122344322 24555543 234567789999998877 89999999 999999
Q ss_pred cEEEEE
Q psy3125 153 NMAIML 158 (163)
Q Consensus 153 ~~~~~L 158 (163)
+..+.|
T Consensus 92 ~~~i~L 97 (98)
T cd05898 92 TAIIQL 97 (98)
T ss_pred eEEEEe
Confidence 999887
No 249
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.48 E-value=4.2e-07 Score=53.26 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=47.7
Q ss_pred eEeeCCCeEEEecCCCC-ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCCCc--cEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLL-TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM--NMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~~~--~~~~~L~V 160 (163)
..+..|..+.++|.... ...+.|+.++..+....+......-|.|.+++.+|+|.|.|.+...|.. -..+.|.|
T Consensus 6 ~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 6 RTVAPGADVVLPCQLRSNLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred EEEecCCCEEEECCCCCCCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 45677888999997543 4588898887754321100011112889999999999999999433433 34445544
No 250
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.48 E-value=6.7e-07 Score=54.24 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=35.0
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc-C-CCCCccEEEEEEEe
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N-TEPKMNMAIMLNVD 161 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L~V~ 161 (163)
|..+.........+|+|++++.+|+|.|.|.+ + ..|..+..+.|.|.
T Consensus 52 Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 52 RVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW 100 (100)
T ss_pred cEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence 44444433345677999999999999999998 3 45667778888774
No 251
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.46 E-value=5.2e-07 Score=54.04 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=45.2
Q ss_pred eCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCC---CCceEEEEecccCcCCCeeEEEEc-CCCC----CccE
Q psy3125 90 SAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQ---NSDEWNMKIDYAQKRDAGIYECQV-NTEP----KMNM 154 (163)
Q Consensus 90 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~----~~~~ 154 (163)
..+....+.|+. ...+.+.|++++..+...... ......|.|.++..+|+|.|+|+| +..+ +..+
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr 87 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITR 87 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEE
Confidence 344555666653 234578899887543211100 012345999999999999999999 6543 4456
Q ss_pred EEEEEEe
Q psy3125 155 AIMLNVD 161 (163)
Q Consensus 155 ~~~L~V~ 161 (163)
.+.|.|.
T Consensus 88 ~~~l~v~ 94 (95)
T cd05897 88 IIKLRIV 94 (95)
T ss_pred EEEEEEc
Confidence 6667664
No 252
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.45 E-value=2.6e-06 Score=53.07 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=27.0
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
....+|+|.+++.+|+|.|.|.+ +... .....+.|.|
T Consensus 77 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 77 RKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred CCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 34578999999999999999999 4422 1234566654
No 253
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.45 E-value=1.9e-06 Score=49.90 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=36.9
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE-ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT-YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...+. | +.|.|+| ++..+. +... ...+.+|.. ..+|.+.-...+|.+.|.|++.+
T Consensus 4 L~C~s~~skP~a~i~W~k--~~~~l~-~~~~~~~~~~~~t~-------~s~L~~~~~~~Ddg~~~~C~A~n 64 (80)
T cd05885 4 LTCLSPRSKPAATLRWYR--DRKELK-GVISQQENGKTVSV-------SNTIRFPVDRKDDGAILSCEASH 64 (80)
T ss_pred EEEeCCCccCCCeEEEEE--CCEECC-CCcccccCCceEEE-------EEEEEEEeeeccCCcEEEEEEEC
Confidence 57888854 5 9999998 443332 1110 011122221 34689988899999999999954
No 254
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.44 E-value=1.3e-06 Score=52.37 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=30.6
Q ss_pred CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
+.|.|+| +...+.. ...++.... +...|.|.+|..+|+|.|+|++.
T Consensus 30 ~~v~WYK--d~~~l~~------~~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~~~ 75 (95)
T cd05897 30 VELQWYK--DSVLLDK------DNEKFYSLK----GSTYLHIIDVSLNDSGYYTCKLQ 75 (95)
T ss_pred CcEEEcc--CCEECcC------CCcceEecC----CCCEEEEEEcChhhCEEEEEEEE
Confidence 7999998 3333321 112333211 23359999999999999999994
No 255
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.43 E-value=1.4e-06 Score=51.89 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=49.7
Q ss_pred eEeeCCCeEEEecCCCCc-eeEEEEeCCCeEEEe-cCCCCceEEEEecccCcCCCeeEEEEc-CCC---CCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLT-TNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAGIYECQV-NTE---PKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~---~~~~~~~~L~V 160 (163)
..+..|..+.+.|..... ....|++++...... .........|.|.+|+.+|+|.|+|.+ +.. ...+..+.|.|
T Consensus 11 ~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 11 SVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred CccCCCCcEEEEEecCCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 467789999999986543 344555554422211 122345667999999999999999999 542 24556677766
No 256
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.43 E-value=5.7e-07 Score=48.93 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 92 GPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
|..+.+.|.. .+...+.|++++..+............|.|.+++.+|+|.|+|.+ +.
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 4456666652 334567888766544310011123456999999999999999999 54
No 257
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.42 E-value=2.5e-06 Score=53.09 Aligned_cols=37 Identities=32% Similarity=0.328 Sum_probs=27.6
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
....+|.|++++.+|+|.|+|.+ +... .....+.|+|
T Consensus 76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 76 RRDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred CCceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 34567999999999999999999 4433 2345666664
No 258
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.42 E-value=2.5e-06 Score=48.98 Aligned_cols=59 Identities=19% Similarity=0.460 Sum_probs=39.4
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIM 77 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~ 77 (163)
|.|.+.+.| ..+.|++ +...+. . ..+. |.|.++..+|.|.|+|.+.+.. ..+..+.
T Consensus 19 l~C~~~~~p~~~~~w~~--~~~~~~---------------~--~~~~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 19 LTCSVSGNPPPQVQWYK--NGSPIN---------------S--SQNG--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp EEEEEESSSSSEEEEEE--TTEEEE---------------E--ESSE--EEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEcccceeeeeee--eeeeee---------------e--eeee--eeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 579999988 9999998 322221 0 0111 7778899999999999995432 3344444
Q ss_pred EEE
Q psy3125 78 LNV 80 (163)
Q Consensus 78 l~V 80 (163)
|.|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 543
No 259
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.41 E-value=1.2e-06 Score=54.02 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=37.8
Q ss_pred eEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 RFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+.+.. .......+|+|++++.+|+|.|.|.+ .........+.|.|.|
T Consensus 59 R~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 59 RVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred eEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 665543 23345677999999999999999999 5556788899999976
No 260
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.39 E-value=4.1e-06 Score=51.19 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=44.3
Q ss_pred eEeeCCCeEEEecCCCCc--eeEEEEeCCC---eEEEe---cC---------CC-----CceEEEEecccCcCCCeeEEE
Q psy3125 87 ARLSAGPLLNFAFPDLLT--TNIYTYTGDA---RFSVI---HP---------QN-----SDEWNMKIDYAQKRDAGIYEC 144 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~---~~---------~~-----~~~~~L~i~~v~~~D~G~Y~C 144 (163)
..+..|..+.+.|...+. ..+.|++... +..+. .. .. ....+|.|++++.+|+|.|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 345567777887765443 3778887521 11110 00 00 113469999999999999999
Q ss_pred Ec-CCC-CCccEEEEEEE
Q psy3125 145 QV-NTE-PKMNMAIMLNV 160 (163)
Q Consensus 145 ~a-~~~-~~~~~~~~L~V 160 (163)
.+ +.. ......+.|.|
T Consensus 88 ~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 88 QTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEeCCccEEEEEEEEEC
Confidence 99 544 34444555543
No 261
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.38 E-value=3.1e-06 Score=46.73 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCeEEEecCC---CCceeEEEEeCCCeEEEe-----cCCCCce-EEEEecccCcCCCeeEEEEc
Q psy3125 92 GPLLNFAFPD---LLTTNIYTYTGDARFSVI-----HPQNSDE-WNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 92 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~L~i~~v~~~D~G~Y~C~a 146 (163)
|..+.+.|.. .......|++++...... ....... ..|.|.+++++|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 3456666754 344688888886632111 1111111 23999999999999999986
No 262
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.38 E-value=1.3e-06 Score=53.85 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=37.1
Q ss_pred eEEEecC-CCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 115 RFSVIHP-QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 115 ~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
|+.+... ......+|+|++++.+|+|.|.|.+ .........+.|.|.|
T Consensus 59 Rvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 59 RVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred EEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 5555432 2235678999999999999999999 5556677888999876
No 263
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.37 E-value=1.7e-06 Score=51.82 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
...+|.|++++.+|+|.|+|.| +..
T Consensus 63 g~~~L~I~~l~~sDsgtY~C~v~~~~ 88 (94)
T cd07690 63 GSFPLIIKNLKIEDSDTYICEVEDKK 88 (94)
T ss_pred CeEEEEECCCCHHHCEEEEEEECCcc
Confidence 4567999999999999999999 543
No 264
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.36 E-value=1.8e-06 Score=52.17 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=34.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-C-CCCCccEEEEEEE
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N-TEPKMNMAIMLNV 160 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~-~~~~~~~~~~L~V 160 (163)
+|+.+.. ......+|.|++++.+|.|.|.|.+ + ..|+.+..+.|.|
T Consensus 51 ~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFKN-PSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEcC-CCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 3444432 2235667999999999999999999 4 3567778888877
No 265
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.36 E-value=7.5e-06 Score=49.32 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=27.3
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~ 150 (163)
.|+.+..........|+|.+++.+|+|.|.|.+...+
T Consensus 51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 4555543344567789999999999999999994333
No 266
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.35 E-value=1.4e-06 Score=50.13 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=37.4
Q ss_pred EecC--CCCceeEEEEeCCCeEEEecC----CCCceEEEEecccCc----CCCeeEEEEc-CCCCCcc-EEEEE
Q psy3125 97 FAFP--DLLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQK----RDAGIYECQV-NTEPKMN-MAIML 158 (163)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~----~D~G~Y~C~a-~~~~~~~-~~~~L 158 (163)
+.|. ..+.+.+.|++++..+..... .......|.|..+.. +|+|.|+|.| |..|... +.+.|
T Consensus 3 l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 4454 345567888876553321110 012245688888754 7999999999 8877543 34444
No 267
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.34 E-value=2e-06 Score=49.55 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=38.7
Q ss_pred EEecC--CCCceeEEEEeCCCeEEEecCC----CCceEEEEecccCc----CCCeeEEEEc-CCCCCccE-EEEE
Q psy3125 96 NFAFP--DLLTTNIYTYTGDARFSVIHPQ----NSDEWNMKIDYAQK----RDAGIYECQV-NTEPKMNM-AIML 158 (163)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~----~D~G~Y~C~a-~~~~~~~~-~~~L 158 (163)
.+.|. ..+.+.+.|++++..+...... ....+.|.|..+.. .|+|.|+|.| |..|.... .++|
T Consensus 2 ~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 2 VIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 34554 4566788898876644221110 11234688877764 4889999999 88776543 5554
No 268
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.33 E-value=1.7e-05 Score=49.36 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=31.5
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEEE
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~V 160 (163)
|+.+.........+|.|++++.+|.|.|+|.+ |... .....+.|.|
T Consensus 68 Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 68 RIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred ceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 55554444455678999999999999999999 4433 2334555543
No 269
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.33 E-value=6.7e-06 Score=49.50 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEEE
Q psy3125 123 NSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLNV 160 (163)
Q Consensus 123 ~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~V 160 (163)
.....+|+|++++.+|+|.|+|.+ ...|..+..+.|+|
T Consensus 57 ~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 57 GLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 345677999999999999999998 44567777888877
No 270
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.33 E-value=2.6e-06 Score=51.16 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=33.7
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEcCC--CCCccEEEEEEE
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMAIMLNV 160 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~--~~~~~~~~~L~V 160 (163)
|+.+.. ......+|.|++++.+|+|.|.|.+.+ .|+.+.++.|+|
T Consensus 49 Rv~~~~-~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 49 RVSFKN-YSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred cEEEcC-CCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 444432 334467899999999999999999944 567777777776
No 271
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.32 E-value=6.2e-06 Score=48.96 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=26.0
Q ss_pred EEEEecccCcCCCeeEEEEc-CC-CCCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NT-EPKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~-~~~~~~~~~L~V 160 (163)
.+|.|++++.+|+|.|+|.+ .. .......+.|.|
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 56999999999999999999 33 244555555554
No 272
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.32 E-value=1.8e-06 Score=51.79 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=44.2
Q ss_pred ceEeeCCCeEEEecCC---CCceeEEEEeCCCeEEEecC----CCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 86 GARLSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
...+..|..+.+.|.. .+...+.|+.++....+... .....+.|.|++|+++|+|.|+|.| |..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence 3557778889999953 35578889887542211110 1123456999999999999999999 553
No 273
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.30 E-value=3e-06 Score=48.84 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=36.2
Q ss_pred EEecC--CCCceeEEEEeCCCeEEEecC----CCCceEEEEecccC----cCCCeeEEEEc-CCCCCcc
Q psy3125 96 NFAFP--DLLTTNIYTYTGDARFSVIHP----QNSDEWNMKIDYAQ----KRDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 96 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~----~~D~G~Y~C~a-~~~~~~~ 153 (163)
.+.|. ..+.+.+.|++++..+..... .......|.|..+. .+|+|.|+|.| |..|...
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred EEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 34554 456778889887653321110 01224569998764 24799999999 8887553
No 274
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.29 E-value=1.1e-05 Score=48.59 Aligned_cols=36 Identities=17% Similarity=0.485 Sum_probs=28.0
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V 160 (163)
..++|+|++++.+|+|.|.|.+ ...+ .....+.|.|
T Consensus 59 ~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 59 NDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3577999999999999999999 4444 3356667766
No 275
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.29 E-value=5.4e-06 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.4
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...+|.|++++++|+|.|+|.+
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~ 91 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCAS 91 (110)
T ss_pred CccEEEECCCChhhCEEEEEEe
Confidence 4678999999999999999999
No 276
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.28 E-value=4.6e-06 Score=50.17 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=29.8
Q ss_pred ceEEEEecccCcCCCeeEEEEcC--CCCCccEEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVN--TEPKMNMAIMLNV 160 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~--~~~~~~~~~~L~V 160 (163)
...+|+|++++.+|+|.|.|.+. ..|.....+.|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 56789999999999999999983 4567777777776
No 277
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.28 E-value=5.1e-06 Score=51.71 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=25.8
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+........+.|+|.+++.+|+|.|.|.+
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~ 91 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCAL 91 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEE
Confidence 455554333345678999999999999999999
No 278
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.27 E-value=7.9e-06 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=20.6
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|+|++++.+|+|.|.|.+
T Consensus 68 ~~~~~L~I~~~~~~Dsg~Y~Ca~ 90 (106)
T cd04980 68 GTDFTLTISRVEPEDAAVYYCQQ 90 (106)
T ss_pred CCEEEEEECCCChHHCEEEEEEE
Confidence 34677999999999999999998
No 279
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.25 E-value=4.7e-06 Score=50.05 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=31.4
Q ss_pred ceEEEEecccCcCCCeeEEEEcCCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~~~~~~~~~~~L~V~ 161 (163)
...+|.|++++.+|+|.|+|.+.+.+.-+.+..+.|.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV 94 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence 4677999999999999999999887777777777664
No 280
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.25 E-value=8.8e-06 Score=46.68 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=48.1
Q ss_pred eEeeCCCeEEEecCC--CCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC-CCccEEEEEEE
Q psy3125 87 ARLSAGPLLNFAFPD--LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE-PKMNMAIMLNV 160 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~-~~~~~~~~L~V 160 (163)
..+..|..+.+.|.. .+.....|+.++..+.-.. . . |.|..+..+|+|.|+|.| +.. +..+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--~--~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--N--G--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--S--E--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--e--e--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 457778889999853 3346788988765444221 1 1 888999999999999999 533 46667777765
No 281
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.24 E-value=3.9e-06 Score=52.19 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.6
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+..........|+|++++.+|+|.|.|.+
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 96 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAY 96 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEE
Confidence 455554433235788999999999999999998
No 282
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.24 E-value=5.9e-06 Score=51.24 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=34.5
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
....+|.|.+++.+|+|.|.|.+ .........+.|.|.|
T Consensus 76 ~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 76 QGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 34678999999999999999999 6777888999999986
No 283
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.22 E-value=7.3e-06 Score=49.86 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=26.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.|+.+.........+|+|++++.+|+|.|.|.+ +..
T Consensus 54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 90 (105)
T cd00099 54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSG 90 (105)
T ss_pred CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 355544433335778999999999999999999 443
No 284
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.21 E-value=6.4e-06 Score=50.65 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=47.7
Q ss_pred CceEEecCC----CcEEEEEecCCe--eEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLG----RPVSWMRKRDLH--ILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~----~~v~W~k~~~~~--~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|.+.+.. ..+.|+|..++. ++.. ++......+|+.+..+...+..+|.|.+++.+|++.|.|..
T Consensus 18 LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 18 LVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 679998766 578999975442 1211 22111235688777766678999999999999999999986
No 285
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.21 E-value=5.1e-06 Score=49.37 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=39.9
Q ss_pred CeEEEecCC--CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCc-CCCeeEEEEc-CCCCCcc
Q psy3125 93 PLLNFAFPD--LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQK-RDAGIYECQV-NTEPKMN 153 (163)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~-~D~G~Y~C~a-~~~~~~~ 153 (163)
..+.+.|.. .+.+.+.|++++..+..... .......|.|.++.. +|+|.|+|.| |..|...
T Consensus 20 ~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 20 GKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 457777763 45678899887654421110 001124689988874 9999999999 8877553
No 286
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.19 E-value=1.1e-05 Score=48.35 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=44.4
Q ss_pred CceEeeCCCeEEEecC---CCCceeEEEEeCCCeEEEec-CC-CCceEEEEecccCcCCCe-eEEEEc-CCC
Q psy3125 85 RGARLSAGPLLNFAFP---DLLTTNIYTYTGDARFSVIH-PQ-NSDEWNMKIDYAQKRDAG-IYECQV-NTE 149 (163)
Q Consensus 85 ~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~L~i~~v~~~D~G-~Y~C~a-~~~ 149 (163)
..+.+..|..+.+.|. ..+.+.+.|......+.... +. .+..+.|.|++|..+|+| .|.|.| +..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 3456788999999995 24567888886644321110 00 012356999999999999 799999 554
No 287
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.19 E-value=1.7e-06 Score=48.95 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=34.7
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|.|.+.+.+ +.+.|+....... . ..+.. .....+|.|.++..+|.|.|+|.+.
T Consensus 20 l~C~~~~~~~~~~~~W~~~~~~~~---~------~~~~~-----~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 20 LTCSAEGGPPPPSISWYDSNPSFN---S------NSRGS-----SSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp EEEEESSEESSEEEEEETEEEEEE---E------EEEEE-----EEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred EEEEEccccCCeEEEEEecCCcee---e------eeeec-----cceeeEEEEccCCHHhCcEEEEEEE
Confidence 579999886 8899981000000 0 00111 1135679999999999999999984
No 288
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.17 E-value=1.1e-05 Score=49.50 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=25.9
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.++.+..........|+|++++.+|+|.|.|..
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~ 91 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMT 91 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeE
Confidence 456554334455678999999999999999998
No 289
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.17 E-value=1.6e-05 Score=47.65 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=48.8
Q ss_pred ceEeeCCCeEEEecCCCC-ceeEEEEeCCCeEEE----ecCCCCceEEEEecccCcCCCeeEEEEc--CCCC----CccE
Q psy3125 86 GARLSAGPLLNFAFPDLL-TTNIYTYTGDARFSV----IHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEP----KMNM 154 (163)
Q Consensus 86 ~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~----~~~~ 154 (163)
...+..|..+.+.|.... .....|++.+..... ..........+.|.+++.+|+|.|+|.. ...+ ..+.
T Consensus 9 ~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sd 88 (94)
T cd05711 9 SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSD 88 (94)
T ss_pred CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCC
Confidence 456788999999996433 235667776653221 1111334667999999999999999997 2222 4455
Q ss_pred EEEEEE
Q psy3125 155 AIMLNV 160 (163)
Q Consensus 155 ~~~L~V 160 (163)
.+.|.|
T Consensus 89 pl~l~V 94 (94)
T cd05711 89 PLKIVV 94 (94)
T ss_pred CeEEeC
Confidence 555543
No 290
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.13 E-value=3.3e-05 Score=46.54 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=33.0
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+.|.|.+++.+|+|.|+|.| |.....+..+.|.|.
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 3567999999999999999999 888898888888875
No 291
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.13 E-value=1.3e-05 Score=44.05 Aligned_cols=62 Identities=18% Similarity=0.396 Sum_probs=38.9
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+.+ ..+.|++.+..... .... +.............|.|.+++.+|.|.|.|.+...
T Consensus 3 l~C~~~~~~~~~~~W~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 3 LTCLASGPPPPTITWLKNGKPLPS--SVLT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred EEEEecCCCCCcEEEEECCEECCC--cccE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 579999966 99999983221110 1000 00011111234677999999999999999999543
No 292
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.11 E-value=1.9e-05 Score=47.54 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=24.4
Q ss_pred CeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 114 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|+.+.. ......|+|++++.+|+|.|.|.+
T Consensus 52 ~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 52 DRFSGSK--SGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred CCEEEEc--cCCEEEEEECCCChhhCEEEEEEE
Confidence 3555443 235678999999999999999998
No 293
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.07 E-value=6.6e-05 Score=49.94 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=31.1
Q ss_pred ceEEEEecccCcCCCeeEEEEcCCC--C-CccEEEEEEEec
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQVNTE--P-KMNMAIMLNVDG 162 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a~~~--~-~~~~~~~L~V~~ 162 (163)
....|+|++++++|+|.|.|.++.. | +.+..+-|+|.+
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 4567999999999999999999554 4 667778888865
No 294
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.00 E-value=3.1e-05 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.....|.|.+|+.+|+|.|+|+..+
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEEC
Confidence 3467799999999999999999954
No 295
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.98 E-value=8e-05 Score=46.57 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=24.6
Q ss_pred eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 115 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
|+.+.........+|+|.+++.+|+|.|.|.+
T Consensus 68 R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~ 99 (119)
T cd05712 68 RFRLLGDLGKKNCSLLISDAQPEDSGKYFFRV 99 (119)
T ss_pred cEEEecCCCCCEEEEEEccCChhhCeEEEEEE
Confidence 44443333445678999999999999999988
No 296
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.94 E-value=2.9e-05 Score=44.93 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=43.4
Q ss_pred EEEecC---CCCceeEEEEeCCCeEEEecC--CC----CceEEEEecccCcCCCeeEEEEc-CCCC---CccEEEEEEE
Q psy3125 95 LNFAFP---DLLTTNIYTYTGDARFSVIHP--QN----SDEWNMKIDYAQKRDAGIYECQV-NTEP---KMNMAIMLNV 160 (163)
Q Consensus 95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~L~i~~v~~~D~G~Y~C~a-~~~~---~~~~~~~L~V 160 (163)
+.+.|. ..+...+.||.++..+..... .. ...+.|+|...+.+|++.|+|+| |..+ ....+..|+|
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 456675 345678899988775532110 11 22346999999999999999999 6644 3445556654
No 297
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.94 E-value=2.9e-05 Score=46.34 Aligned_cols=60 Identities=22% Similarity=0.463 Sum_probs=36.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+. | +.|.|+| ++..+..+. .....++.|.+. ..|.|......|.|.|+|++.+.
T Consensus 18 L~C~a~g~~P~~~~i~W~~--~g~~~~~~~~~~~~~~~~~gt~~~~-------s~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 18 LTCLATGFYPPDITVTWLK--NGKELTSGVTTTPPVPNSDGTYSVS-------SQLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred EEEEEeeEECCCcEEEEEE--CCEECCCceeccccccCCCCCEEEE-------EEEEECHHHhCCCCCEEEEEEeC
Confidence 57999998 5 6899998 333332111 111223333332 24677776777999999999653
No 298
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.92 E-value=0.00018 Score=42.00 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=49.4
Q ss_pred eEeeCCCeEEEecCCCC----ceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 87 ARLSAGPLLNFAFPDLL----TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 87 ~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
..+..|..+.+.|...+ ...+.|..++....-. ......+|.+..+...|+|.++|.+ .........+.+.|.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 45677888999987533 3377888776643211 2234556999999999999999999 443344445555554
No 299
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.91 E-value=1.4e-05 Score=45.99 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=27.2
Q ss_pred CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|+.+........++|+|++++.+|+|.|.|.+
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 4567666544466888999999999999999974
No 300
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.91 E-value=0.00012 Score=42.67 Aligned_cols=59 Identities=19% Similarity=0.368 Sum_probs=33.5
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE--ecCC-CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT--YTGD-ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~--~~~~-~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+| ++..+..+... ...+ +.|++. ..|.+.-....|...|.|++.+
T Consensus 4 LtC~a~g~~P~~~ItW~k--~g~~l~~~~~~~~~~~~~~t~~~~-------s~l~~~~~~~d~g~~~tC~v~h 67 (83)
T cd07705 4 LRCTSSGSKPAANIKWRK--GDQELEGAPTSVLEDGNGKTFTVS-------SSVEFQVTREDDGAEITCSVGH 67 (83)
T ss_pred EEEEecCccCCCEeEEEE--CCEECCCcceeEEECCCCCEEEEE-------EEEEEEecchhCCCEEEEEEEC
Confidence 57999986 7 9999998 43333211100 0111 122222 2355545556666799999965
No 301
>KOG3515|consensus
Probab=97.88 E-value=0.0001 Score=58.69 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=84.7
Q ss_pred CceEEecCC--CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC--CCeeEEE
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAI 76 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~ 76 (163)
|+|.+.+.| ..++|++.+.+.. +|+.... +-+|...+..+.--+.|.|++.+. ......+
T Consensus 27 l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~ 90 (741)
T KOG3515|consen 27 LPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIA-----DPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPM 90 (741)
T ss_pred eeeecCCCCCCcceEEEecCcccc-----------ccccccc-----CCceeeecchhhhhhhhhhhhcccccCceecce
Confidence 689999888 8999998433322 3444333 334777777888889999999543 2234455
Q ss_pred EEEEEcCCC------ceEeeCCCeEEEec-C---CCCceeEEEEeCCCeEEE-e--------cCCC---CceEEEEeccc
Q psy3125 77 MLNVDDRGR------GARLSAGPLLNFAF-P---DLLTTNIYTYTGDARFSV-I--------HPQN---SDEWNMKIDYA 134 (163)
Q Consensus 77 ~l~V~~~~~------~~~v~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~--------~~~~---~~~~~L~i~~v 134 (163)
.+.|..++. +.....+..+...| . ..+.....|..++.-... . .-.. .....|.+...
T Consensus 91 ~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~ 170 (741)
T KOG3515|consen 91 ILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS 170 (741)
T ss_pred eeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE
Confidence 566665531 12233455666666 2 233456667655432111 1 0011 12445888899
Q ss_pred CcCCCeeEEEEc-CC---CCCccEEEEEEE
Q psy3125 135 QKRDAGIYECQV-NT---EPKMNMAIMLNV 160 (163)
Q Consensus 135 ~~~D~G~Y~C~a-~~---~~~~~~~~~L~V 160 (163)
+..|.|.|+|.| +. ....-....+.|
T Consensus 171 Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v 200 (741)
T KOG3515|consen 171 RKADNGNYTCPANNRNSPGLSFAKQLTIIV 200 (741)
T ss_pred EecCCceeEcccccccCccccccceeEeec
Confidence 999999999999 42 233334444444
No 302
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.87 E-value=0.00027 Score=41.07 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=37.8
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecce-EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC--CCCeeEE
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIY-TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT--EPKMNMA 75 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~~~~~~ 75 (163)
|.|.+.|. | +.|.|+| ++..+..... .....+++.. ..+|.+.--...|...|.|++.+ .......
T Consensus 4 L~C~s~gSkP~A~I~W~k--~~~~l~~~~~~~~~~~~~~t~-------~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~ 74 (82)
T cd05883 4 LNCTAMASKPAATIRWFK--GNKELTGKSTVEETWSRMFTV-------TSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQ 74 (82)
T ss_pred EEEEecCCCCCCEEEEEE--CCEECcCcccceeccCCCcEE-------EEEEEEECchhhCCCEEEEEEcCcccCCceee
Confidence 57999876 4 9999998 3333321111 0011122222 23466644444454589999954 2224455
Q ss_pred EEEEEE
Q psy3125 76 IMLNVD 81 (163)
Q Consensus 76 ~~l~V~ 81 (163)
..|.|.
T Consensus 75 ~~L~V~ 80 (82)
T cd05883 75 RYLEVQ 80 (82)
T ss_pred EEEEEE
Confidence 556654
No 303
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.85 E-value=0.0002 Score=41.68 Aligned_cols=58 Identities=17% Similarity=0.400 Sum_probs=32.3
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE--e-cCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT--Y-TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~--~-~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+| ++..+. +... . ..++.|.+. ..|.+.-....|.+.|.|++.+
T Consensus 4 L~C~~~~~~P~~~v~W~~--~~~~l~-~~~~~~~~~~~~~~~~~-------s~l~~~~~~~d~g~~~~C~v~h 66 (82)
T cd05761 4 LTCTSSGSKPAATIRWFK--GDKELK-GVKLKEEDENGKTFTVT-------SSLRFQVDREDDGAPIICRVDH 66 (82)
T ss_pred EEEEecCcCcCCeEEEEE--CCEEcc-CceeeEecCCCCEEEEE-------EEEEEEcchhhCCCEEEEEEeC
Confidence 57999876 7 9999998 333332 1110 0 011223322 1355544445556799999954
No 304
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.75 E-value=5.1e-05 Score=42.75 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=33.0
Q ss_pred EEEecCCC--C-ceeEEEEeCCC-eEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 95 LNFAFPDL--L-TTNIYTYTGDA-RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 95 ~~~~~~~~--~-~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
+.+.|... . ...+.|+.... ..............|.|+++..+|.|.|+|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence 77888632 2 45677771111 11111122234667999999999999999998
No 305
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.71 E-value=0.00023 Score=41.59 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCeEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEEEE
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLNVD 81 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~V~ 81 (163)
.+..+|.+..+...|+|+.+|.+. ........+.+.|.
T Consensus 48 ~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 48 QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 457889999999999999999994 33233455555554
No 306
>PHA02633 hypothetical protein; Provisional
Probab=97.67 E-value=0.00013 Score=39.40 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=27.9
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCC-CeeEEEEEEEEcC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEP-KMNMAIMLNVDDR 83 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~ 83 (163)
+...|+|.++..+|+|.|.|.+.+.. .....+.|+|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 34569999999999999999996432 2334555666544
No 307
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.66 E-value=0.00026 Score=42.35 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=33.0
Q ss_pred CceEEecCCCcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 1 l~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
|.|........+.|+|.+....... . + ..........+.|.+++.+|+|.|.|..
T Consensus 20 L~C~~~~~~~~f~l~k~g~~~~~~~-----~-~-----~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 20 LQCHSDIRFDRFILYKEGRSKPVLH-----L-Y-----EKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred EEEecCCCCCEEEEEECCCCCCcee-----c-c-----cccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 5676665227788998443211100 0 0 0000122456999999999999999997
No 308
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.66 E-value=0.00022 Score=44.46 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=19.8
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
....|+|.+++.+|+|.|.|.+
T Consensus 74 ~~~~L~I~~~~~~Dsa~YyCa~ 95 (117)
T cd04981 74 STVYLQLNSLTPEDTAVYYCAR 95 (117)
T ss_pred CEEEEEECCCCHHHCEEEEEEE
Confidence 3457999999999999999988
No 309
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.50 E-value=0.00057 Score=39.60 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=26.6
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC--CCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE--PKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~--~~~~~~~~L~V 160 (163)
+.|.|.....+|.|.|+|.| +.. .....+++|+|
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 46889888889999999999 554 45567777765
No 310
>PHA02633 hypothetical protein; Provisional
Probab=97.36 E-value=0.00054 Score=37.10 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=27.8
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
...|-|-++..+|+|.|.|.+ |..-....++.|.|-
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 334888899999999999999 665566666766664
No 311
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.36 E-value=0.0014 Score=38.21 Aligned_cols=59 Identities=15% Similarity=0.353 Sum_probs=32.9
Q ss_pred CceEEecC-C-CcEEEEEecCCeeEEecceE---ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G-RPVSWMRKRDLHILTTNIYT---YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~-~~v~W~k~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+| ++..+...... ...++.|+.. .+|.+..-...|...|+|++.+
T Consensus 4 LtC~a~gf~P~~~itW~k--ng~~l~~~~~~~~~~~~~~t~~~~-------s~L~~~~~~~d~g~~ytC~v~h 67 (83)
T cd05884 4 LTCKTSGSKPAADIRWFK--NDKEIKDVKYLKEEDANRKTFTVS-------STLDFRVDRSDDGVAIICRVDH 67 (83)
T ss_pred EEEEeCCccCCCEEEEEE--CCEECcCceeeEeeCCCCCEEEEE-------EEEEEEcccccCCCEEEEEEec
Confidence 57999974 5 8999998 43333211110 1122333332 2366654445556689999954
No 312
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.35 E-value=0.0026 Score=36.25 Aligned_cols=59 Identities=20% Similarity=0.462 Sum_probs=35.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|+| ++..+..+.. ....++.|++.. .|.|......+...|+|.+..
T Consensus 4 L~C~a~gf~P~~i~v~W~k--~g~~~~~~~~~~~~~~~~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H 69 (75)
T smart00407 4 LVCLVSGFYPPDITVTWLR--NGQEVTSGVSTTDPLKNSDGTYFLSS-------YLTVSASTWESGDTYTCQVTH 69 (75)
T ss_pred EEEEEEeEeCCCCEEEEEE--CCEECCCCEEECceEECCCCCEEEEE-------EEEEccccCCCCCEEEEEEEE
Confidence 57999987 4 6899998 3332211111 112344454432 366655566677899999954
No 313
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.30 E-value=0.00037 Score=42.48 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.2
Q ss_pred CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|+.+... .....|+|++++.+|+|.|.|.+
T Consensus 57 ~~rf~~~~~--~~~~~L~I~~~~~sDsgtY~Ca~ 88 (104)
T cd05720 57 SKRFSGSRS--SNSFVLTLKNFQKENEGYYFCSV 88 (104)
T ss_pred CceEEEEec--CCEEEEEECCCCHHHCEEEEEEE
Confidence 356665432 35778999999999999999988
No 314
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.21 E-value=0.0034 Score=36.47 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=45.7
Q ss_pred EEEecC---CCCceeEEEEeCCCeEEEec-------CCCCceEEEEecccCcCCCeeEEEEc-CC-CCCccEEEEEEEec
Q psy3125 95 LNFAFP---DLLTTNIYTYTGDARFSVIH-------PQNSDEWNMKIDYAQKRDAGIYECQV-NT-EPKMNMAIMLNVDG 162 (163)
Q Consensus 95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~-~~~~~~~~~L~V~~ 162 (163)
+.+.|. ..+...+.|+.++..+.-.. ......+.|.|..-..+|...|+|+| +. ......+..|+|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 345564 34567889998876543211 11223567999888888888899999 43 34577888888865
No 315
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.11 E-value=0.0041 Score=39.84 Aligned_cols=61 Identities=18% Similarity=0.399 Sum_probs=34.5
Q ss_pred CceEEecC-C--CcEEEEEecCCe-e---EEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLH-I---LTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~-~---~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | +.|.|+|.+... . ...+ ......++.|++.. .|.|..-...+.+.|.|.+.+
T Consensus 58 L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s-------~L~v~~~~~~~g~~ytC~V~H 129 (139)
T cd05771 58 LICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSS-------HLTLEPGTEDAGATYTCRVSH 129 (139)
T ss_pred EEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEE-------EEEecCCccCCCCEEEEEEEc
Confidence 57999995 4 489999843221 1 1001 11122344454432 466665555556799999964
No 316
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.08 E-value=0.0034 Score=37.50 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=34.2
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+..+ ......++.|++.. .|.|..-...+...|.|++...
T Consensus 19 L~C~a~gFyP~~I~vtW~~--dg~~~~~~~~~s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 19 LLCLISGYTPGTIEVEWLV--DGQVATLVAASTAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred EEEEEEeEECCCCEEEEEE--CCEECcCceeecccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEEEEC
Confidence 57999984 5 7889998 43333111 11122334444332 3556544445667999999653
No 317
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.07 E-value=0.00068 Score=42.72 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=40.3
Q ss_pred CceEEecCC------CcEEEEEecCCeeEEecceE----ecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee-CC
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLHILTTNIYT----YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN-TE 69 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~-~~ 69 (163)
|+|.+...+ ..|.|..+ +..++.+++.. ....++..+ .+-..++.+|.+...+.- .|.|+|.+. ..
T Consensus 32 IPC~v~n~~~~ni~~m~VkWk~~-~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~ 108 (130)
T PF08204_consen 32 IPCFVNNLEANNISEMYVKWKFK-NKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTELS 108 (130)
T ss_dssp E--BBSS---SSGGGEEEEEEET-TEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEETT
T ss_pred EEeEeccccccccceEEEEEEEC-CeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEecC
Confidence 578887643 45889863 44444433321 112334444 322356888999886555 799999994 33
Q ss_pred CCeeEEEEEEE
Q psy3125 70 PKMNMAIMLNV 80 (163)
Q Consensus 70 ~~~~~~~~l~V 80 (163)
......+.|+.
T Consensus 109 ~ege~~i~Lk~ 119 (130)
T PF08204_consen 109 REGETTIELKY 119 (130)
T ss_dssp EEEEEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 34555666654
No 318
>PHA03376 BARF1; Provisional
Probab=97.03 E-value=0.011 Score=39.80 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=20.7
Q ss_pred ceEEEEecccCcCCCeeEEEEc
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
++.+|.|.+++.+|.|.|+|.+
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~f 106 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRM 106 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEE
Confidence 5778999999999999999999
No 319
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.98 E-value=0.0052 Score=36.81 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=31.9
Q ss_pred CceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
+.|... +.| +.|.|++...+..- .......++++.+.. .|.+.--...|...|.|++.+
T Consensus 20 a~C~s~~gkPaa~IsW~~~~~g~~~--~~~~~~~~gt~tv~S-------~l~~~P~~~d~Gk~ltC~v~h 80 (95)
T cd07703 20 AKCVSANGRPPARISWSSTLGGNAN--TTSKENGDGTVTVTS-------EYSLVPTPEANGKEVTCKVEH 80 (95)
T ss_pred EEEEcCCCCCCcEEEEEcCCCCCee--EEEEeCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeC
Confidence 368776 667 99999983111110 111112233444332 355544445555589999965
No 320
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.84 E-value=0.0074 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.8
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
.....|.|.+++..|+|.|.|.+ +..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 34667999999999999999999 443
No 321
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.84 E-value=0.0064 Score=36.49 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=32.4
Q ss_pred CceEEecC--C--CcEEEEEecCCeeEEecce--EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL--G--RPVSWMRKRDLHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~--~--~~v~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|+|.+ +........ ....++.|++.. .|.+..-...+.-.|.|.+..
T Consensus 19 LtC~v~gf~yP~~i~v~W~r~~-~~~~~~~~~~~~~~~dgty~~~s-------~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 19 LTCLVTNLTSPEGVNVTWTRGS-GEPVKASIQPPESHNNATLSVTS-------TLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred EEEEEeCCCCCCCcEEEEEECC-eEeeeEEecccccCCCCCEEEEE-------EEEeCHHHccCCCcEEEEEEC
Confidence 57999998 6 788999832 232221111 112233444332 244443333334489999965
No 322
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.83 E-value=0.0055 Score=37.03 Aligned_cols=59 Identities=15% Similarity=0.380 Sum_probs=34.3
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEec----ceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTN----IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|+| ++..+..+ ......++.|++.. .|.+..-...+...|.|++..
T Consensus 22 L~C~~~gfyP~~i~v~W~~--~g~~~~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H 87 (100)
T cd07699 22 LVCLINDFYPGFATVQWKV--DGATVSSGVQTSTTEQQSDNTYSLSS-------YLTLTKSDWNKHKVYTCEVTH 87 (100)
T ss_pred EEEEEEeEECCCCEEEEEE--CCEECcccEeccccEECCCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEe
Confidence 57999985 4 7889998 33333211 11122245555432 355655554556799999964
No 323
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.81 E-value=0.0031 Score=35.00 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.2
Q ss_pred eEEEEEcccCcCCCeeEEEEeeCCCCeeEEEEEEEEc
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDD 82 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~ 82 (163)
+.+|.+..+...-.|.|.|++.. ......|+|..
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQVyY 65 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE---PNKEKTLQVYY 65 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc---CCCcEEEEEEE
Confidence 45688888999999999999843 22344566543
No 324
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.80 E-value=0.0088 Score=35.56 Aligned_cols=16 Identities=31% Similarity=0.943 Sum_probs=13.3
Q ss_pred CceEEecC-C--CcEEEEE
Q psy3125 1 MACTVMGL-G--RPVSWMR 16 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k 16 (163)
|.|.+.|. | ..|.|+|
T Consensus 19 L~C~a~gF~P~~i~v~W~~ 37 (93)
T cd07698 19 LSCHATGFYPRDIEVTWLR 37 (93)
T ss_pred EEEEEEEEeCCCcEEEEEE
Confidence 57999995 5 5889998
No 325
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.70 E-value=0.012 Score=35.31 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=29.7
Q ss_pred ceEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 2 ACTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 2 ~C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.|... +.| +.|.|++.-.+... .......++.+.+.. .|.+.-....|.-.|+|++.+
T Consensus 21 ~C~s~~gkP~a~ItW~~~~~~~~~--~~~~~~~~g~~tv~S-------~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 21 TCVSANGKPPATISWETTLGGEAE--TQSKENPNGTVTVTS-------EYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred EEECCCCcCCCEEEEEeCCCCcce--eEeecCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeC
Confidence 58884 778 99999983111110 000111222333322 355544444444589999954
No 326
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.68 E-value=0.015 Score=34.68 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=33.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+.. .......|+.|++.. .|.+. .++...|.|++...
T Consensus 20 L~C~a~gFyP~~I~v~W~~--~g~~~~~~~~~~~~~~~~Dgty~~~s-------~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 20 LICFVDNFFPPVLNVTWLK--NGVPVTDGVSETRYYPRQDLSFQKFS-------YLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred EEEEEEEEECCcCEEEEEE--CCeEccCceEEeeeEeCCCCcEEEEE-------EEEEE---CCCCCeEEEEEEeC
Confidence 57999984 5 7889998 3333221 112223455555442 25443 34556999999653
No 327
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.62 E-value=0.032 Score=30.78 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 91 AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.|..+.+.|+..... +.|..++.... . ....+.+.+-. +++|.|.|.+
T Consensus 6 sGTtVtlTCP~~~~~-i~W~~n~~~~~--g----~~~~~~~~~~~-e~~G~Y~C~~ 53 (65)
T cd07692 6 SGTTVTVTCPLSGDD-IKWKKNDQVSQ--G----SDEKYLSLNHF-SSSGYYHCTA 53 (65)
T ss_pred eccEEEEECCCCCCC-ceEEeCCccCC--C----CCceEEeeccC-CCCceEEEEe
Confidence 367788899865333 88888873211 1 12234444555 8999999999
No 328
>PHA02982 hypothetical protein; Provisional
Probab=96.58 E-value=0.0042 Score=42.15 Aligned_cols=66 Identities=8% Similarity=0.314 Sum_probs=41.1
Q ss_pred CceEEecCC--CcEEEEEecCCeeEE--ecce-----EecCCC---eEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGLG--RPVSWMRKRDLHILT--TNIY-----TYTGDA---RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~~--~~v~W~k~~~~~~~~--~~~~-----~~~~~~---r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|...... ..+.|++.++..+-. .+.. .+.+.+ .+.+.. +.+..+|.|+++..+..|.|+|++..
T Consensus 44 L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv--~g~~STLTIkk~~i~N~GCYtc~~ks 121 (251)
T PHA02982 44 LQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV--SGNSSTFTMKKPDPQNLGCFTCEAKD 121 (251)
T ss_pred EEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE--eccceeEEeccCCcccCCceEEEEec
Confidence 467766655 788898744322221 1111 111222 233333 35688999999999999999999965
No 329
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.54 E-value=0.0097 Score=35.98 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=30.7
Q ss_pred CceEEecC-C-Cc--EEEEEecCCeeEEecceEecCCCeEEEe-ccCCCCeEEEEEcccCcCCCe-eEEEEee
Q psy3125 1 MACTVMGL-G-RP--VSWMRKRDLHILTTNIYTYTGDARFSVI-HPQNSDEWNMKIDYAQKRDAG-IYECQVN 67 (163)
Q Consensus 1 l~C~~~~~-~-~~--v~W~k~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~ 67 (163)
|.|.+.+. | +. |.|+| +...+.... +... ........+|.+. +.++|.| .|.|++.
T Consensus 21 L~C~v~g~~P~a~L~i~W~r--G~~~l~~~~--------~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~ 82 (100)
T cd05755 21 LQCDVPGVAPRQNLTVVLLR--GNETLSRQP--------FGDNTKSPVNAPATITIT-VDREDHGANFSCETE 82 (100)
T ss_pred EEEEEcCcCCCCcEEEEEee--CCEEcccce--------eccccCCCceeEEEEEEe-cchhhCCcEEEEEEE
Confidence 57999975 4 54 79998 443332111 1100 0001124456654 5566666 8999994
No 330
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.53 E-value=0.004 Score=43.71 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=32.6
Q ss_pred CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEee
Q psy3125 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67 (163)
Q Consensus 10 ~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 67 (163)
|...|.-. ++.+ +...++..+.. ++.|.+.+.+++++|.|+|.+.
T Consensus 13 P~y~W~GP-~g~~-------l~gn~~~nIT~-----TG~L~~~~F~esmSG~YTCtLs 57 (271)
T PF07354_consen 13 PTYLWTGP-NGKP-------LSGNSYVNITE-----TGKLMFKNFQESMSGSYTCTLS 57 (271)
T ss_pred CceEEECC-CCcc-------cCCCCeEEEcc-----CceEEeeccccccCCceEEEEE
Confidence 78889852 2222 23445666664 5669999999999999999883
No 331
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.53 E-value=0.026 Score=34.91 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..|+.+....+.....|+|.+++.+|++.|.|..
T Consensus 60 ~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 60 LDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred CCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 4566677666777889999999999999999976
No 332
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.51 E-value=0.027 Score=33.59 Aligned_cols=57 Identities=19% Similarity=0.424 Sum_probs=31.7
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.|. | ..|.|+| ++..+.. .......++.|++.. .|.+ ...+...|.|++...
T Consensus 19 L~C~~~gFyP~~i~v~W~~--~g~~~~~~~~~~~~~~~~dgTy~~~s-------~L~~---~~~~~~~ysC~V~H~ 82 (94)
T cd05766 19 LVCHVWGFYPPEITVKWFK--NGQEETEGVVSTELIPNGDWTYQILV-------MLET---TPSRGDTYTCVVEHS 82 (94)
T ss_pred EEEEEeeecCCCCEEEEEE--CCeecCCCceecceEECCCCcEEEEE-------EEEE---cCCCCCEEEEEEEeC
Confidence 57999985 5 6889998 3333221 111122333444432 2433 334566899999653
No 333
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.42 E-value=0.013 Score=35.56 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=28.9
Q ss_pred CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCe-eEEEEEEE
Q psy3125 34 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKM-NMAIMLNV 80 (163)
Q Consensus 34 ~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l~V 80 (163)
.||.+.. .+++|.|+.++..|+|.|.-++.. .+.. ...+.+.|
T Consensus 62 ~r~~F~~----enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 62 NRFNFTS----ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHEEEET----TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEeeec----cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4777764 478999999999999999999943 3433 23344444
No 334
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.40 E-value=0.032 Score=33.47 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=12.9
Q ss_pred CceEEec-CC--CcEEEEE
Q psy3125 1 MACTVMG-LG--RPVSWMR 16 (163)
Q Consensus 1 l~C~~~~-~~--~~v~W~k 16 (163)
|.|.+.+ +| ..|.|+|
T Consensus 21 L~C~a~gFyP~~I~v~W~k 39 (96)
T cd07697 21 YLCLLENFFPDVIQVHWRE 39 (96)
T ss_pred EEEEEEEEeCCCeEEEEEE
Confidence 5699998 45 7889998
No 335
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.37 E-value=0.027 Score=33.59 Aligned_cols=56 Identities=14% Similarity=0.382 Sum_probs=33.2
Q ss_pred CceEEec-CC--CcEEEEEecCCeeEEecce----EecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 1 MACTVMG-LG--RPVSWMRKRDLHILTTNIY----TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~-~~--~~v~W~k~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
|.|.+.+ +| ..|.|+| ++..+. +.. ....|+.|++.. .|.+ ...+...|.|++...
T Consensus 20 L~C~a~gFyP~~i~v~W~~--dg~~~~-~~~~~~~~p~~d~tyq~~s-------~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 20 LNCYVTGFHPPDIEIRLLK--NGVKIP-KVEQSDLSFSKDWTFYLLK-------STEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred EEEEEEEEeCCCCEEEEEE--CCEECC-CcEECcEEECCCCCEEEEE-------EEEE---CCCCCCeEEEEEEEC
Confidence 5799998 45 7889998 444332 221 122344555432 2333 456777899999653
No 336
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.94 E-value=0.034 Score=33.73 Aligned_cols=59 Identities=17% Similarity=0.415 Sum_probs=30.9
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc-eE--ec----CCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI-YT--YT----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~-~~--~~----~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.|. | ..|.|+| ++..+..+. .. .. .++-|++.. .|.|..-...+...|.|++..
T Consensus 21 L~C~a~gFyP~~i~v~W~k--~g~~~~~~~~~~~~~~~~~~~dgTy~~~s-------~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 21 LTCLVKGFSPSDIFVKWLQ--NGQPLSKQKYVTTAPMQEPGGNESYFLYS-------KLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred EEEEEeeEeCCCCEEEEEE--CCEECCcccccccCcccccCCCCeEEEEE-------EEEEcHHHhcCCCcEEEEeEe
Confidence 57999985 4 6789998 332221111 00 00 123444332 355533333455689999965
No 337
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=95.82 E-value=0.05 Score=33.57 Aligned_cols=59 Identities=20% Similarity=0.492 Sum_probs=32.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecceEec--CC-CeEEEeccCCCCeEEEEEcccCcCCCe-eEEEEeeCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIYTYT--GD-ARFSVIHPQNSDEWNMKIDYAQKRDAG-IYECQVNTE 69 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~~~~--~~-~r~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~~~~~ 69 (163)
|.|.+.+. | ..|.|+| ++..+..+..... .+ +.|++.. .|.+. +...|.| .|.|++...
T Consensus 26 L~C~a~gF~P~~i~v~W~k--ng~~~~~~~~~~~p~~d~~ty~~~S-------~L~~~-~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 26 FTCSAHGFSPRDITVKWLK--NGNELSAEQPNITPEGDSVSYNVTS-------TVQVK-LTEDDVHSQVTCEVQHR 91 (111)
T ss_pred EEEEEeeEeCCCCEEEEEE--CCEECcccccceeeCCCCCcEEEEE-------EEEEE-CccccccCceEEEEEeC
Confidence 57999975 3 6899998 4443332211111 22 1344332 24444 4555655 599999653
No 338
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.78 E-value=0.036 Score=33.16 Aligned_cols=60 Identities=10% Similarity=0.334 Sum_probs=32.4
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecc----eEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNI----YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|+| ++.. ..+. .....++.|++.. .|.+..-.-...-.|.|++...+
T Consensus 21 L~C~a~gFyP~~i~vtW~k--~g~~-~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 21 LGCLATGFLPEPVTFTWNS--GSNS-TSGVKTYPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEEEeeEECCCcEEEEeE--CCEE-CCCcEECCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 56999985 4 7889998 3332 2121 1111245555432 25544332222457999996543
No 339
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.68 E-value=0.057 Score=31.20 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=33.1
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEe----cceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+.+. | ..|.|++ ++..+.. .......++.|.+.. .|.+. ..+...|.|++..
T Consensus 13 L~C~v~~f~P~~i~v~W~~--~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~H 75 (83)
T PF07654_consen 13 LTCLVSGFYPKDITVTWLK--NGKEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVTH 75 (83)
T ss_dssp EEEEEEEEBSSTEEEEEEE--TTEEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEEE
T ss_pred EEEEEEEEECCCcEEEEEe--ccceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEEE
Confidence 57999975 4 6899987 3332211 111113466666553 25555 5555689999954
No 340
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.30 E-value=0.12 Score=32.18 Aligned_cols=61 Identities=13% Similarity=0.326 Sum_probs=33.0
Q ss_pred CceEEecC-C--CcEEEEEecCCeeEEecce----EecC-CCeEEEeccCCCCeEEEEEcccCcCC-CeeEEEEeeCCC
Q psy3125 1 MACTVMGL-G--RPVSWMRKRDLHILTTNIY----TYTG-DARFSVIHPQNSDEWNMKIDYAQKRD-AGIYECQVNTEP 70 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~~~~~~~~~~~~----~~~~-~~r~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~~~~~~ 70 (163)
|.|.+.+. | ..|.|+| ++..+..+.. .... ++.|++.. .|.|......| .-.|.|++...+
T Consensus 23 L~Cla~gFyP~~I~V~W~k--ng~~l~~g~~~~~~~~~~~~gTYs~~S-------~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 23 LVCLATGFYPDHVSLSWKV--NGKEVTDGVATDPQALRENTSTYSISS-------RLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEEEEEeEeCCCcEEEEEE--CCEECCCCcccccceecCCCCeEEEEE-------EEEEChHHhccCCCeEEEEEEEeC
Confidence 57999985 4 6889998 3333222211 1111 13344332 36665444434 458999996543
No 341
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.27 E-value=0.096 Score=33.17 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=39.0
Q ss_pred eCCCeEEEecCC-------CCceeEEEEeCCCeEEEecCC-----------------CCceEEEEecccCcCCCeeEEEE
Q psy3125 90 SAGPLLNFAFPD-------LLTTNIYTYTGDARFSVIHPQ-----------------NSDEWNMKIDYAQKRDAGIYECQ 145 (163)
Q Consensus 90 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~L~i~~v~~~D~G~Y~C~ 145 (163)
.+...+.++|.. .....+.|..++..+...... .....+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 355667777743 234567888776644322111 112345888776655 9999999
Q ss_pred c-CCCCCccEEEEEEE
Q psy3125 146 V-NTEPKMNMAIMLNV 160 (163)
Q Consensus 146 a-~~~~~~~~~~~L~V 160 (163)
| ......+..+.|..
T Consensus 104 Vt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGETTIELKY 119 (130)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 9 66556666666665
No 342
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.16 E-value=0.12 Score=31.24 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=13.2
Q ss_pred CceEEec-C-C--CcEEEEEe
Q psy3125 1 MACTVMG-L-G--RPVSWMRK 17 (163)
Q Consensus 1 l~C~~~~-~-~--~~v~W~k~ 17 (163)
|.|.+.+ + | ..|.|.+.
T Consensus 24 LtClV~~f~~P~~i~V~W~~~ 44 (99)
T cd04986 24 LTCTLSGLRDPEGAVFTWTPS 44 (99)
T ss_pred EEEEEeccCCCCCeEEEEEEC
Confidence 5699998 4 4 78999873
No 343
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.04 E-value=0.14 Score=28.53 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred eEEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc
Q psy3125 94 LLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.+.+.|... ..+.|+. +.+..... ..+|.|.....+-.|.|.|.+
T Consensus 8 ~V~L~C~~~--tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~ 52 (69)
T cd07691 8 KVFLKCNGA--TNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKE 52 (69)
T ss_pred eEEEEecCC--CcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecC
Confidence 355667542 4588888 44333211 445999999999999999999
No 344
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=94.99 E-value=0.25 Score=29.87 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=38.0
Q ss_pred EeeCCCeEEEecCCC---Cce--eEEEEeCCCeEEEec------CCCCceEEEEecccCcCCCeeEEEEc-CC
Q psy3125 88 RLSAGPLLNFAFPDL---LTT--NIYTYTGDARFSVIH------PQNSDEWNMKIDYAQKRDAGIYECQV-NT 148 (163)
Q Consensus 88 ~v~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~ 148 (163)
.+..|..+.+.|... +.. .+.|++++..+.-.. .......+|++..-+.+|.-.|+|+| +.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 457788899999632 223 368998876553221 11223556777655555555799999 44
No 345
>KOG4597|consensus
Probab=94.96 E-value=0.051 Score=41.47 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=44.5
Q ss_pred CceEEecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEE
Q psy3125 1 MACTVMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIML 78 (163)
Q Consensus 1 l~C~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l 78 (163)
+.|-+.|.+ +.|.|.+.- ..+..... .+.-.+....-.....|.|-+....|+|.|+|.+.. .+.....+.+
T Consensus 216 ~tCg~~G~q~r~V~c~qv~-----anr~~vv~-~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c 289 (560)
T KOG4597|consen 216 STCGVQGRQYRVVTCEQVF-----ANRENVVM-RPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPC 289 (560)
T ss_pred ccccccCCcCceeeeehhh-----ccccceee-cCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecccee
Confidence 468889999 999998621 00111111 111111111113467799999999999999999943 4444445555
Q ss_pred EEE
Q psy3125 79 NVD 81 (163)
Q Consensus 79 ~V~ 81 (163)
.+.
T Consensus 290 ~s~ 292 (560)
T KOG4597|consen 290 SSV 292 (560)
T ss_pred eee
Confidence 443
No 346
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=94.70 E-value=0.38 Score=27.96 Aligned_cols=60 Identities=12% Similarity=0.307 Sum_probs=30.7
Q ss_pred CceEEe-cCC-CcEEEEEecCCee--EEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 1 MACTVM-GLG-RPVSWMRKRDLHI--LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 1 l~C~~~-~~~-~~v~W~k~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|.|.+. +.| +.|.|+..+ ..+ ..........++.+.+. .+|.+..-...+...++|++..
T Consensus 19 ~~C~s~~~~P~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~-------S~l~~~~~~~~~~~~~~C~~~~ 82 (89)
T PF08205_consen 19 LTCSSSGGYPPPQITWYLDG-GPVVASNTTQSSSPDNGLFTVS-------STLTLTPTREDHGKTLTCRASH 82 (89)
T ss_dssp EEEEEEEEBS-EEEEEEETT-CEECEEEEEEEEETTTTTEEEE-------EEEEEETTGGGTTEEEEEEEEE
T ss_pred EEEEeCCeECCeEEEEEECC-CceeeeeeeeeeccCCCcceEE-------EEEEEEcChHHCCeEEEEEEEC
Confidence 468655 667 999999732 222 11111111222223222 2356544444555689999954
No 347
>KOG3515|consensus
Probab=94.62 E-value=0.15 Score=41.43 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEEEcccCcCCCeeEEEEeeCC--CCeeEEEEEEEEcC--C---------CceEeeCCCeEEEecC---CCCceeEEEE
Q psy3125 47 WNMKIDYAQKRDAGIYECQVNTE--PKMNMAIMLNVDDR--G---------RGARLSAGPLLNFAFP---DLLTTNIYTY 110 (163)
Q Consensus 47 ~~L~i~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~V~~~--~---------~~~~v~~~~~~~~~~~---~~~~~~~~~~ 110 (163)
..|.+...+.+|.|.|+|.+++. +..+....+.+... . ....+..+..+.+-|. ..+.....|+
T Consensus 163 s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 163 SLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred cceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence 34788888999999999999553 33444334433322 1 1234556777888884 2456778888
Q ss_pred eCCCeEEEe----cCCCCc--eEEEEecccCcCCCeeEEEEc-C
Q psy3125 111 TGDARFSVI----HPQNSD--EWNMKIDYAQKRDAGIYECQV-N 147 (163)
Q Consensus 111 ~~~~~~~~~----~~~~~~--~~~L~i~~v~~~D~G~Y~C~a-~ 147 (163)
.+...+... .+..+. ...+.+..-+..+.-...|.+ |
T Consensus 243 ~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n 286 (741)
T KOG3515|consen 243 KDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN 286 (741)
T ss_pred cccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC
Confidence 776644332 122221 222333333344444477999 5
No 348
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.61 E-value=0.19 Score=30.15 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=30.7
Q ss_pred eEEe-cCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 3 CTVM-GLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 3 C~~~-~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
|... +.| +.|.|+....+.. . -......++.+.+.. +|.+..-+..|.-.++|++..
T Consensus 24 C~sa~gkPaa~IsW~~~~~G~~-~-~~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 24 CCAAEGRPAADVTWETNVYGTS-E-SHSQEHPNGTTTVTS-------EYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred EEccCCccCCEeEEeCCCCCcc-c-eeeecCCCCCEEEEE-------EEEEEeCHHHCCcEEEEEEeC
Confidence 4444 667 9999996322211 0 011112234444442 366655555666689999964
No 349
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.42 E-value=0.11 Score=31.56 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKM 152 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~ 152 (163)
...|.|+.++.+|+|.|.=++ +..|.+
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcE
Confidence 345999999999999999999 777766
No 350
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=94.33 E-value=0.12 Score=30.43 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=18.8
Q ss_pred EEEEecccCcCCCeeEEEEc-CCCC
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTEP 150 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~~ 150 (163)
+.|.|......|.|.|+|+| +...
T Consensus 62 s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 62 SQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEEECHHHhCCCCCEEEEEEeCCC
Confidence 45778877788999999999 5433
No 351
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=94.05 E-value=0.23 Score=28.77 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=22.8
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC---CCccEEEEEEE
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE---PKMNMAIMLNV 160 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~---~~~~~~~~L~V 160 (163)
..|.|.....+|...|+|+| +.. ...+.+..|.|
T Consensus 46 s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~ 83 (83)
T cd07705 46 SSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV 83 (83)
T ss_pred EEEEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence 45777677778889999999 443 23445556554
No 352
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=94.04 E-value=0.63 Score=26.75 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=17.0
Q ss_pred EEEEecccCcCCCeeEEEEc-CCC
Q psy3125 127 WNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
+.|.+.....+|.+.|+|.| +..
T Consensus 45 s~l~~~~~~~d~g~~~~C~v~h~~ 68 (82)
T cd05761 45 SSLRFQVDREDDGAPIICRVDHPA 68 (82)
T ss_pred EEEEEEcchhhCCCEEEEEEeChh
Confidence 34777666777788999999 544
No 353
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.82 E-value=0.095 Score=37.05 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCceeEEEEeCCCeEEEecC--CCCceEEEEecccCcCCCeeEEEEc
Q psy3125 102 LLTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
..++...|..++++..-... .-..++.|.+.+..+.+||.|+|..
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtL 56 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTL 56 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEE
Confidence 34566777766554321110 0012455999999999999999987
No 354
>PHA03042 CD47-like protein; Provisional
Probab=92.96 E-value=1.7 Score=31.15 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=40.7
Q ss_pred eCCCeEEEecCCC-------CceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 90 SAGPLLNFAFPDL-------LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
.+..++..+|... ....+.|..+++........ ...+|.+.-... =.|.|+|+| +........+.|+
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecccc-CCCceeEEEeecccCccEEEEEE
Confidence 3556677777432 35678898888766544322 445677654332 389999999 4444445555544
No 355
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=92.84 E-value=1.2 Score=26.51 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=40.4
Q ss_pred CCeEEEecCC---CCceeEEEEeCC-CeEEEe--cCCCC---ceEEEEecccCcCCCeeEEEEc-CCC--CCccEEEEEE
Q psy3125 92 GPLLNFAFPD---LLTTNIYTYTGD-ARFSVI--HPQNS---DEWNMKIDYAQKRDAGIYECQV-NTE--PKMNMAIMLN 159 (163)
Q Consensus 92 ~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~--~~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~--~~~~~~~~L~ 159 (163)
.+.....|.. .+...+.|+.+. +..... ....+ ..+.|.+.....+|.-.|+|.| +.. .....++.|+
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 3456677753 456788888762 211111 11111 2456888777777778899999 443 3555566665
Q ss_pred E
Q psy3125 160 V 160 (163)
Q Consensus 160 V 160 (163)
|
T Consensus 95 V 95 (95)
T cd05719 95 V 95 (95)
T ss_pred C
Confidence 4
No 356
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.82 E-value=0.54 Score=35.44 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=26.6
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCCC--eeEEEEEEEE
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEPK--MNMAIMLNVD 81 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~--~~~~~~l~V~ 81 (163)
..+++.+.|+.++|.|.|.|.+..... ....+.|.|.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 478899999999999999999944333 3344444443
No 357
>KOG1480|consensus
Probab=90.57 E-value=0.13 Score=41.60 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=32.1
Q ss_pred ecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 6 MGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 6 ~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.+.| ..+.|+|+ ..+.. ++..+... ....|.|..+++.|+|.|+|++.+
T Consensus 155 e~~paae~~w~k~--e~~~~-------pd~n~~~~-----~d~~li~~~arlsd~~nytc~a~n 204 (909)
T KOG1480|consen 155 EGDPKAEVEWLKN--EVVID-------PDANVIRA-----SDHNLIISQARLSDSGNYTCEATN 204 (909)
T ss_pred ccchhhhhhcccc--CCCCC-------ccccchhh-----hcCCccccchhhhhcccceeeeeh
Confidence 3556 78889983 32222 12222222 244599999999999999999954
No 358
>PHA03042 CD47-like protein; Provisional
Probab=89.72 E-value=2.5 Score=30.34 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=32.6
Q ss_pred CceEEecCC------CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC-CCCee
Q psy3125 1 MACTVMGLG------RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT-EPKMN 73 (163)
Q Consensus 1 l~C~~~~~~------~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~ 73 (163)
++|.++... ..|.|.. ++..+..+++. +..+|.+.. ...=.|.|+|++.. .....
T Consensus 36 IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t----------------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 36 IVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT----------------NTSSLKFNF-SKNLSGNYTCEAINKFNKIK 97 (286)
T ss_pred EEeecCChhhcCccceEEEEEe-CCeeEEEecCC----------------cceEEEEec-cccCCCceeEEEeecccCcc
Confidence 467777652 6688976 33334332221 223455533 33447999999943 22334
Q ss_pred EEEEEE
Q psy3125 74 MAIMLN 79 (163)
Q Consensus 74 ~~~~l~ 79 (163)
..+.|+
T Consensus 98 ~~IeLk 103 (286)
T PHA03042 98 NTIELQ 103 (286)
T ss_pred EEEEEE
Confidence 444444
No 359
>PHA03271 envelope glycoprotein C; Provisional
Probab=89.48 E-value=8 Score=29.65 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCeEEEEEcccCcCCCeeEEEEee---CCCCeeEEEEEEEEcCCCceEeeC-----CCeEEEecC-----CCCceeEEEE
Q psy3125 44 SDEWNMKIDYAQKRDAGIYECQVN---TEPKMNMAIMLNVDDRGRGARLSA-----GPLLNFAFP-----DLLTTNIYTY 110 (163)
Q Consensus 44 ~~~~~L~i~~v~~~D~G~Y~C~~~---~~~~~~~~~~l~V~~~~~~~~v~~-----~~~~~~~~~-----~~~~~~~~~~ 110 (163)
.++..|.|.++.-.|+|.|+-... +.+.....+.+.|...++.+.+.. |......|. ........|+
T Consensus 204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 467889999999999996633332 234455666777777666555443 445555664 3345678888
Q ss_pred eCCC
Q psy3125 111 TGDA 114 (163)
Q Consensus 111 ~~~~ 114 (163)
.++.
T Consensus 284 ~nG~ 287 (490)
T PHA03271 284 QNGN 287 (490)
T ss_pred eCCc
Confidence 8755
No 360
>PHA02982 hypothetical protein; Provisional
Probab=89.02 E-value=0.63 Score=31.98 Aligned_cols=23 Identities=9% Similarity=0.429 Sum_probs=21.0
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...++|+|+.+..+..|.|+|+|
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ 119 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEA 119 (251)
T ss_pred ccceeEEeccCCcccCCceEEEE
Confidence 45677999999999999999999
No 361
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=88.41 E-value=3.7 Score=24.47 Aligned_cols=68 Identities=7% Similarity=-0.028 Sum_probs=39.1
Q ss_pred CCeEEEecC---CCCceeEEEEeCCCe-E-EEe-cCCCC---ceEEEEecccCcCCCeeEEEEc-CCCC--CccEEEEEE
Q psy3125 92 GPLLNFAFP---DLLTTNIYTYTGDAR-F-SVI-HPQNS---DEWNMKIDYAQKRDAGIYECQV-NTEP--KMNMAIMLN 159 (163)
Q Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~~~~-~-~~~-~~~~~---~~~~L~i~~v~~~D~G~Y~C~a-~~~~--~~~~~~~L~ 159 (163)
.+.+.+.|. ..+...+.|+.+... . ... ....+ ..+.|.+.....+|.-.|+|+| +... .....+.|.
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~ 94 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTLS 94 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEEe
Confidence 355667775 345678889876321 1 111 11111 1456888777777888899999 5543 333444443
No 362
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=88.27 E-value=1.3 Score=33.56 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=29.2
Q ss_pred ceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEEEe
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLNVD 161 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~V~ 161 (163)
....+.+.++.+.|.|.|+|.. +..-...+.+.|.|.
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 3456889999999999999998 555566777777764
No 363
>PHA03282 envelope glycoprotein E; Provisional
Probab=87.32 E-value=1.8 Score=33.47 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeCCC---CeeEEEEEEEEc
Q psy3125 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIMLNVDD 82 (163)
Q Consensus 33 ~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~~~~l~V~~ 82 (163)
++|..+. +.+|.|.+++.+|+|.|.-.+...+ .....+.|.|..
T Consensus 116 ~~rvs~~------n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 116 PPRVAVV------NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred CcceeEe------cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 4555544 5579999999999999999883322 234445666653
No 364
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=87.31 E-value=2.3 Score=24.53 Aligned_cols=58 Identities=7% Similarity=0.132 Sum_probs=34.9
Q ss_pred CCeEEEecC---CCCceeEEEEeCCCeE---EEe----cCCCC--ceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 92 GPLLNFAFP---DLLTTNIYTYTGDARF---SVI----HPQNS--DEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~----~~~~~--~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
+..+.+.|. ..+.+.+.|+.++... ... ..... ..+.|.+..-+..+...++|.| +..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 456777774 3456788898887765 111 11111 2356777766666777799999 443
No 365
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=86.13 E-value=4.7 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=15.7
Q ss_pred EEecccCcCCCeeEEEEcC
Q psy3125 129 MKIDYAQKRDAGIYECQVN 147 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a~ 147 (163)
+.......+|+|.+.|.|.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 5566778899999999993
No 366
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=85.97 E-value=5.6 Score=23.90 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=43.4
Q ss_pred CceEeeCCCeEEE-ecC---CCCceeEEEEeCCC-eEEE--ecCCC---CceEEEEecccCcCCCeeEEEEc-CCC--CC
Q psy3125 85 RGARLSAGPLLNF-AFP---DLLTTNIYTYTGDA-RFSV--IHPQN---SDEWNMKIDYAQKRDAGIYECQV-NTE--PK 151 (163)
Q Consensus 85 ~~~~v~~~~~~~~-~~~---~~~~~~~~~~~~~~-~~~~--~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a-~~~--~~ 151 (163)
..+.+.+|..+.+ .|. ..+...+.|+.+.. .... ....+ ...+.|.+...+..|.-.++|.+ ... ..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCC
Confidence 3445556666665 674 34567888987622 1111 11111 12456888777778888899999 332 24
Q ss_pred ccEEEEEEE
Q psy3125 152 MNMAIMLNV 160 (163)
Q Consensus 152 ~~~~~~L~V 160 (163)
......|+|
T Consensus 89 ~~~~~~L~V 97 (97)
T cd07704 89 FRITHILNV 97 (97)
T ss_pred ceeeEEeeC
Confidence 445555554
No 367
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=85.46 E-value=2.1 Score=28.29 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.5
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..-|+|.+.+.+|+|.|.=.+ -...+....+.+.|
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 445999999999999999988 55455555555544
No 368
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=84.84 E-value=2.5 Score=31.37 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=13.6
Q ss_pred CceEEecC-C--CcEEEEEe
Q psy3125 1 MACTVMGL-G--RPVSWMRK 17 (163)
Q Consensus 1 l~C~~~~~-~--~~v~W~k~ 17 (163)
|.|.+.|. | ..|.|.|.
T Consensus 219 L~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 219 LFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred EEEEEEeEeCCccEEEEEec
Confidence 57999976 4 88899984
No 369
>KOG4597|consensus
Probab=83.12 E-value=1.3 Score=34.20 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=30.9
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~ 161 (163)
+-.|.|=+.+..|+|.|+|.| +..|...+.+.+.+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred eeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 456999999999999999999 888888888777664
No 370
>PHA03283 envelope glycoprotein E; Provisional
Probab=82.96 E-value=5.8 Score=31.20 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=28.9
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEEec
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V~~ 162 (163)
...|+|.++..+++|.|+=.. +..+.....+.|.|.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 345999999999999999988 5555555666777765
No 371
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=80.17 E-value=6.2 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred CcCCCe-eEEEEee
Q psy3125 55 QKRDAG-IYECQVN 67 (163)
Q Consensus 55 ~~~D~G-~Y~C~~~ 67 (163)
.++|.| .|.|++.
T Consensus 70 treD~g~~fsC~A~ 83 (99)
T cd07689 70 TIEDIGKVLVCRAK 83 (99)
T ss_pred chhhCCcEEEEEEE
Confidence 477777 8999983
No 372
>PHA03282 envelope glycoprotein E; Provisional
Probab=79.57 E-value=3.5 Score=31.91 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=25.6
Q ss_pred eEEEEecccCcCCCeeEEEEcC---CCCCccEEEEEEEe
Q psy3125 126 EWNMKIDYAQKRDAGIYECQVN---TEPKMNMAIMLNVD 161 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a~---~~~~~~~~~~L~V~ 161 (163)
+.+|.|.+++.+|+|.|+-.+. +.......+.|.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 3459999999999999998772 22334455666663
No 373
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=75.03 E-value=14 Score=21.33 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEcccCcCCCeeEEEEe-eCCCCe-eEEEEEEE
Q psy3125 49 MKIDYAQKRDAGIYECQV-NTEPKM-NMAIMLNV 80 (163)
Q Consensus 49 L~i~~v~~~D~G~Y~C~~-~~~~~~-~~~~~l~V 80 (163)
+.+......|+|...|.| ...++. ...+.|.|
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 566788889999999999 554433 33334443
No 374
>PHA03269 envelope glycoprotein C; Provisional
Probab=72.64 E-value=46 Score=26.36 Aligned_cols=73 Identities=10% Similarity=0.021 Sum_probs=45.5
Q ss_pred CCCCeEEEEEcccCcCCCeeEEEEeeC--CC--CeeEEEEEEEEcCCCceE-----eeCCCeEEEecC-----CCCceeE
Q psy3125 42 QNSDEWNMKIDYAQKRDAGIYECQVNT--EP--KMNMAIMLNVDDRGRGAR-----LSAGPLLNFAFP-----DLLTTNI 107 (163)
Q Consensus 42 ~~~~~~~L~i~~v~~~D~G~Y~C~~~~--~~--~~~~~~~l~V~~~~~~~~-----v~~~~~~~~~~~-----~~~~~~~ 107 (163)
.+.++..|.|.++...++|.|.=.+.+ .. .....+.+.+.-++ .+. +..|....-.|. .......
T Consensus 284 a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P-sVsV~p~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 284 KTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP-NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC-CccccCCccccCCCceEEEEeeeecCCCceEE
Confidence 345688899999999999999866522 11 22344445544444 333 334555666674 3345788
Q ss_pred EEEeCCCe
Q psy3125 108 YTYTGDAR 115 (163)
Q Consensus 108 ~~~~~~~~ 115 (163)
.|+.++..
T Consensus 363 rWf~ng~~ 370 (566)
T PHA03269 363 KWTSNFGN 370 (566)
T ss_pred EEEeCCcc
Confidence 89988553
No 375
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=72.61 E-value=18 Score=21.80 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=32.1
Q ss_pred eeCCCeEEEecCCC-----CceeEEEEeCCCeEEEe---c-----CCCCceEEEEecccCcCCCe-eEEEEc
Q psy3125 89 LSAGPLLNFAFPDL-----LTTNIYTYTGDARFSVI---H-----PQNSDEWNMKIDYAQKRDAG-IYECQV 146 (163)
Q Consensus 89 v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~-----~~~~~~~~L~i~~v~~~D~G-~Y~C~a 146 (163)
+..|..+.+.|... ....+.|++++..+.-. . ........+++... ++|.| .|.|+|
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A 82 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRA 82 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEE
Confidence 45677788888643 22456777655432211 1 11122344666554 66777 699998
No 376
>PHA03289 envelope glycoprotein I; Provisional
Probab=72.49 E-value=8.6 Score=28.33 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=25.3
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..-|+|.+.+.+|+|.|.=.+ -...+....+.|.|
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 346999999999999999988 44444444444443
No 377
>PHA03290 envelope glycoprotein I; Provisional
Probab=72.26 E-value=8.6 Score=28.49 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=24.7
Q ss_pred CceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEE
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L 158 (163)
....-|+|.+.+.+|+|.|.=.+ -...+...-+.|
T Consensus 126 e~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~l 161 (357)
T PHA03290 126 DAEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFL 161 (357)
T ss_pred CcceEEEeCCCCcccCeeEEEEEEeCCCcccceEEE
Confidence 34556999999999999999988 433334344433
No 378
>PHA03189 UL14 tegument protein; Provisional
Probab=70.56 E-value=40 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=14.3
Q ss_pred ccCcCCCeeEEEEeeCCC
Q psy3125 53 YAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 53 ~v~~~D~G~Y~C~~~~~~ 70 (163)
++..+-+|.|.|.+.+..
T Consensus 139 ~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEecccceEEEEecccc
Confidence 667788999999996543
No 379
>PHA03286 envelope glycoprotein E; Provisional
Probab=70.52 E-value=23 Score=27.55 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=0.0
Q ss_pred EEEecCCCCceeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEc--CCCCCccEEEEEEEecC
Q psy3125 95 LNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEPKMNMAIMLNVDGK 163 (163)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a--~~~~~~~~~~~L~V~~~ 163 (163)
+...-..+.......+.+...+.+.. .....|+|.+++.+++|.|+=.. .+.......+.|.|.||
T Consensus 98 F~V~~gsL~rie~~yf~n~p~~~I~t---~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 98 FVVNSGSLKRIESSQLHYIPNVIIGT---GRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred EEEeccccccccccccccCCceEecc---CCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
No 380
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=69.98 E-value=20 Score=23.74 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
+..-|.|.+.+.+|+|.|.-++.-
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEE
Confidence 456699999999999999998853
No 381
>PHA03292 envelope glycoprotein I; Provisional
Probab=69.24 E-value=10 Score=28.63 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=25.3
Q ss_pred ceEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEE
Q psy3125 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159 (163)
Q Consensus 125 ~~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~ 159 (163)
...-|.|.+.+.+|+|.|.=.+ -........+.|.
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~ls 161 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLS 161 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCceeEEE
Confidence 3456999999999999999988 4444444444443
No 382
>KOG1480|consensus
Probab=68.18 E-value=3.8 Score=33.81 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=34.7
Q ss_pred eeCCCeEEEecCC---CCceeEEEEeCCCeEEEec-CCCCceEEEEecccCcCCCeeEEEEc-CCC
Q psy3125 89 LSAGPLLNFAFPD---LLTTNIYTYTGDARFSVIH-PQNSDEWNMKIDYAQKRDAGIYECQV-NTE 149 (163)
Q Consensus 89 v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a-~~~ 149 (163)
|..+..+.+.|.. .+.....|+.++.-..... ........|.|..++..|+|.|+|+| |..
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~ 206 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIV 206 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhh
Confidence 3444445555542 2334556666554322211 00111234999999999999999999 554
No 383
>PHA03273 envelope glycoprotein C; Provisional
Probab=63.31 E-value=72 Score=25.09 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=55.6
Q ss_pred eEEEEEcccCcCCCeeEEEEeeC-CCCeeEEEEEEEEc-CCCceE-----eeCCCeEEEecC-----CCCceeEEEEeCC
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVNT-EPKMNMAIMLNVDD-RGRGAR-----LSAGPLLNFAFP-----DLLTTNIYTYTGD 113 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~-~~~~~~-----v~~~~~~~~~~~-----~~~~~~~~~~~~~ 113 (163)
+..|.|..+...++|.|.=.+.+ .........++|.- .++.+. +..|......|. ........|+.++
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 47799999999999999866522 22233334555532 122232 334555666664 3345678888886
Q ss_pred CeEEEec-----------CCCCceEEEEecccCc-CCCeeEEEEc
Q psy3125 114 ARFSVIH-----------PQNSDEWNMKIDYAQK-RDAGIYECQV 146 (163)
Q Consensus 114 ~~~~~~~-----------~~~~~~~~L~i~~v~~-~D~G~Y~C~a 146 (163)
..+.... ...+..+.|++.+... .-.-..+|++
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v 321 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSI 321 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEE
Confidence 6433100 0112234455555322 3334589987
No 384
>PHA03290 envelope glycoprotein I; Provisional
Probab=62.25 E-value=26 Score=26.13 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.0
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
...-|.|.+.+.+|+|.|.-+++-
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~L 150 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQL 150 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEe
Confidence 456799999999999999999954
No 385
>KOG3611|consensus
Probab=60.44 E-value=22 Score=29.67 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEEcccCcCCCeeEEEEeeCCC
Q psy3125 47 WNMKIDYAQKRDAGIYECQVNTEP 70 (163)
Q Consensus 47 ~~L~i~~v~~~D~G~Y~C~~~~~~ 70 (163)
..|.+..++..|.|.|.|.+....
T Consensus 612 G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 612 GGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred CceeEEEEeeccCcccccccccCc
Confidence 348888999999999999995433
No 386
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=55.46 E-value=14 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=19.8
Q ss_pred CeEEEeccCCCCeEEEEEcccCcCCCeeEEEEe
Q psy3125 34 ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 34 ~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
.+|++-. .+.+|.|..-+++|+|-|.-.+
T Consensus 94 dgY~Fhl----EnLsL~Il~SrkE~EGWYfmtl 122 (126)
T PF06214_consen 94 DGYKFHL----ENLSLEILESRKEDEGWYFMTL 122 (126)
T ss_dssp SSEEEET----TTTEEEETT--GGG-EEEEEEE
T ss_pred cccEEec----ccceeehhccccccCceEEEEe
Confidence 4566554 3778999999999999998654
No 387
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=54.82 E-value=45 Score=20.06 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=28.9
Q ss_pred ceE-EecCC-CcEEEEEecCCeeEEecceEecCCCeEEEeccCCCCeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 2 ACT-VMGLG-RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 2 ~C~-~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.|. ..|.| +.|.|.-.=++.. . -...-..++-+.+.. .+.+.-....|.-.-+|.++.
T Consensus 26 ~CiSa~GrPpa~ItW~t~l~G~~-e-tq~~~~~~GT~TV~S-------~y~lVPs~~~~gk~lTCvV~h 85 (98)
T cd05890 26 TCVSANGKPPSVVRWDTRLKGEA-E-FQEIRNQNGTVTVIS-------RYRLVPSREAHKQKLTCIVNY 85 (98)
T ss_pred EEEcCCCcCCcEeEEEccCCCce-e-eeeeCCCCCCEEEEE-------EEEEeECHHHcCCEeEEEEEe
Confidence 366 66888 9999974211110 0 000001122222221 244445566676789999954
No 388
>PHA03291 envelope glycoprotein I; Provisional
Probab=54.17 E-value=27 Score=26.24 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=24.4
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCCCccEEEEEEE
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~~~~~~~~L~V 160 (163)
..-|.|.+.+.+|+|.|.=.+ -........+.|.+
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~ 163 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGL 163 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEEEee
Confidence 445999999999999999998 43333334444433
No 389
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=52.01 E-value=19 Score=28.04 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=0.0
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCC--CeeEEEEEEEEc
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEP--KMNMAIMLNVDD 82 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~ 82 (163)
+...|.|.+++++|+|.|.-...+.+ .....+.|.|..
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ----------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 35679999999999999999884322 222334455544
No 390
>PHA03281 envelope glycoprotein E; Provisional
Probab=51.21 E-value=35 Score=27.36 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=27.3
Q ss_pred eEEEEecccCcCCCeeEEEEc-CCCC-CccEEEEEEEec
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV-NTEP-KMNMAIMLNVDG 162 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a-~~~~-~~~~~~~L~V~~ 162 (163)
...|+|.++..+++|.|+=.. .+.| +....+.|.|.+
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 346999999999999999888 4434 333366677765
No 391
>KOG0200|consensus
Probab=51.11 E-value=1.2e+02 Score=24.84 Aligned_cols=24 Identities=33% Similarity=0.729 Sum_probs=20.7
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
..+.+.+..+..+|.|.|+|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 356788889999999999999966
No 392
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=50.51 E-value=44 Score=22.68 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=24.9
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCCCCe--eEEEEEEEE
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTEPKM--NMAIMLNVD 81 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~--~~~~~l~V~ 81 (163)
....+.++-|...-+|.|+|.+...... .....++|.
T Consensus 91 G~i~mt~hQVN~DGaGP~~C~iD~tg~g~~~~~~~~~v~ 129 (184)
T PF11327_consen 91 GSISMTIHQVNADGAGPFTCDIDETGTGTFSNFTPLTVT 129 (184)
T ss_pred CEEEEEEEEecCCCCcCeEEEECCCCCccccccEeceEe
Confidence 4667788888888899999999543322 234445554
No 393
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=49.73 E-value=30 Score=18.96 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=11.1
Q ss_pred eEEecCC-CcEEEEEe
Q psy3125 3 CTVMGLG-RPVSWMRK 17 (163)
Q Consensus 3 C~~~~~~-~~v~W~k~ 17 (163)
+...|.+ ..|.|+|.
T Consensus 8 ~TL~Gp~~~~V~Wy~~ 23 (63)
T PF02440_consen 8 VTLVGPPDGPVTWYKF 23 (63)
T ss_pred EEEeCCCCCceEEEEe
Confidence 4566777 88999963
No 394
>PHA03289 envelope glycoprotein I; Provisional
Probab=48.80 E-value=52 Score=24.46 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.8
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
.+.-|.|.+.+.+|+|.|.-++.-
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~L 143 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSL 143 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEe
Confidence 356799999999999999999954
No 395
>PHA03292 envelope glycoprotein I; Provisional
Probab=48.27 E-value=61 Score=24.75 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.9
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
+..-|.|.+.+.+|+|.|.-++.-
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~L 149 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKL 149 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEe
Confidence 356799999999999999999954
No 396
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=44.00 E-value=50 Score=25.82 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=17.7
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNT 68 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~ 68 (163)
+...|.+.|+..+++|.|-|.+.-
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEEE
Confidence 455699999999999999999843
No 397
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=43.28 E-value=63 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=17.7
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...++++.|..+=+|-|+|.+
T Consensus 92 ~i~mt~hQVN~DGaGP~~C~i 112 (184)
T PF11327_consen 92 SISMTIHQVNADGAGPFTCDI 112 (184)
T ss_pred EEEEEEEEecCCCCcCeEEEE
Confidence 445788888888899999999
No 398
>PHA03270 envelope glycoprotein C; Provisional
Probab=43.03 E-value=1.6e+02 Score=23.06 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=41.7
Q ss_pred eEEEEEcccCcCCCeeEEEEee-CCCCeeEEEEEEEE--cCCCceE-----eeCCCeEEEecC-----CCCceeEEEEeC
Q psy3125 46 EWNMKIDYAQKRDAGIYECQVN-TEPKMNMAIMLNVD--DRGRGAR-----LSAGPLLNFAFP-----DLLTTNIYTYTG 112 (163)
Q Consensus 46 ~~~L~i~~v~~~D~G~Y~C~~~-~~~~~~~~~~l~V~--~~~~~~~-----v~~~~~~~~~~~-----~~~~~~~~~~~~ 112 (163)
...|.|+.+....+|.|+=... ..........++|. -++ .+. +..|....-.|. ........|+.+
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~P-svsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRP-SLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCC-cccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 5569999999999999998873 22222222223433 332 232 334555666664 334578889888
Q ss_pred CCe
Q psy3125 113 DAR 115 (163)
Q Consensus 113 ~~~ 115 (163)
+..
T Consensus 260 g~~ 262 (466)
T PHA03270 260 GDE 262 (466)
T ss_pred Ccc
Confidence 663
No 399
>PHA03281 envelope glycoprotein E; Provisional
Probab=40.44 E-value=51 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.206 Sum_probs=18.9
Q ss_pred eEEEEecccCcCCCeeEEEEc
Q psy3125 126 EWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 126 ~~~L~i~~v~~~D~G~Y~C~a 146 (163)
...|.+.++..+++|.|.|++
T Consensus 474 ~vdL~F~nApasaSGLYVfVl 494 (642)
T PHA03281 474 GSALKFVDAAESLSGLYVFII 494 (642)
T ss_pred CcceEeccCCcccCceEEEEE
Confidence 345999999999999999998
No 400
>PHA03291 envelope glycoprotein I; Provisional
Probab=37.56 E-value=56 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.1
Q ss_pred CeEEEEEcccCcCCCeeEEEEeeCC
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQVNTE 69 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~~~~ 69 (163)
...-|.|.+...+|+|.|.-+++-+
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vd 151 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVE 151 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeC
Confidence 3556999999999999999999543
No 401
>PHA03240 envelope glycoprotein M; Provisional
Probab=35.36 E-value=18 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.3
Q ss_pred CeEEEEEcccCcCCCeeEEEEe
Q psy3125 45 DEWNMKIDYAQKRDAGIYECQV 66 (163)
Q Consensus 45 ~~~~L~i~~v~~~D~G~Y~C~~ 66 (163)
.+.+|.|.++..+|.|.|.=..
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred ccceEEEEEEeecCcchhhhcc
Confidence 3778999999999999995433
No 402
>PHA02935 Hypothetical protein; Provisional
Probab=32.26 E-value=73 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.6
Q ss_pred EEecccCcCCCeeEEEEc
Q psy3125 129 MKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a 146 (163)
|.|+.++-+|+|.|.=+.
T Consensus 104 lnisslryedsgsykgvs 121 (349)
T PHA02935 104 LNISSLRYEDSGSYKGVS 121 (349)
T ss_pred eeccceeeccCCcccCch
Confidence 888999999999998655
No 403
>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor. This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=31.97 E-value=86 Score=19.83 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=15.8
Q ss_pred eEEEEEccc-CcCCCeeEEEEeeCCCC
Q psy3125 46 EWNMKIDYA-QKRDAGIYECQVNTEPK 71 (163)
Q Consensus 46 ~~~L~i~~v-~~~D~G~Y~C~~~~~~~ 71 (163)
.+.|++.++ -.++.-+|.|.+...+.
T Consensus 3 ~~dl~~~~v~vP~~~t~Y~C~~~~lp~ 29 (132)
T PF01082_consen 3 TFDLLMPNVTVPSQDTTYWCFVFKLPD 29 (132)
T ss_dssp -EEEE-SSB---SSSSEEEEEEEE-S-
T ss_pred eEEEEcCCcCcCCCCCeEEEEEEECCc
Confidence 456888888 56677899999954443
No 404
>KOG3611|consensus
Probab=30.76 E-value=45 Score=27.98 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.5
Q ss_pred EEecccCcCCCeeEEEEcCCCCCcc
Q psy3125 129 MKIDYAQKRDAGIYECQVNTEPKMN 153 (163)
Q Consensus 129 L~i~~v~~~D~G~Y~C~a~~~~~~~ 153 (163)
|.+..++..|+|.|.|.+...+...
T Consensus 614 lll~~~q~~~~G~y~c~~~e~~~~~ 638 (737)
T KOG3611|consen 614 LVLLSVQKLDGGTYPCYADESSFVS 638 (737)
T ss_pred eeEEEEeeccCcccccccccCcccc
Confidence 7888899999999999994434333
No 405
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=30.50 E-value=1.2e+02 Score=17.96 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=45.2
Q ss_pred EEEcCCCceEeeCCCeEEEecCCCCc--eeEEEEeCCCeEEEecCCCCceEEEEecccCcCCCeeEEEEcCCCC-CccEE
Q psy3125 79 NVDDRGRGARLSAGPLLNFAFPDLLT--TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-KMNMA 155 (163)
Q Consensus 79 ~V~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~~~~-~~~~~ 155 (163)
.|...|+.+.+..|..+.+.|...-+ ....+...-.+...... ..=..+.|.+++. | ..-.|.++=.+ .....
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g--~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~ 80 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSG--PQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSAS 80 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEE--TTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEE
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCC--CcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeE
Confidence 34455667889999999998864321 23445555444443331 2223478899986 5 46679883323 44555
Q ss_pred EEEEEe
Q psy3125 156 IMLNVD 161 (163)
Q Consensus 156 ~~L~V~ 161 (163)
+.|.|.
T Consensus 81 ~~ItVY 86 (91)
T PF03921_consen 81 ANITVY 86 (91)
T ss_dssp EEEEEE
T ss_pred EeeEEe
Confidence 666654
No 406
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=27.88 E-value=29 Score=16.58 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=7.7
Q ss_pred cCCCeeEEEE
Q psy3125 56 KRDAGIYECQ 65 (163)
Q Consensus 56 ~~D~G~Y~C~ 65 (163)
..|.|.|.|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 4578999993
No 407
>PHA03269 envelope glycoprotein C; Provisional
Probab=27.67 E-value=2.4e+02 Score=22.66 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred CceEEEEecccCcCCCeeEEEEc
Q psy3125 124 SDEWNMKIDYAQKRDAGIYECQV 146 (163)
Q Consensus 124 ~~~~~L~i~~v~~~D~G~Y~C~a 146 (163)
.....|.|..+...+.|.|+=.+
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv 308 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRV 308 (566)
T ss_pred CCccceEEeecccccCceEEEEE
Confidence 34556999999999999998665
No 408
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=23.61 E-value=85 Score=17.43 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=16.6
Q ss_pred EEEEecccCcCCCee--EEEEc
Q psy3125 127 WNMKIDYAQKRDAGI--YECQV 146 (163)
Q Consensus 127 ~~L~i~~v~~~D~G~--Y~C~a 146 (163)
+.|.+++-+..-+|. |.|.-
T Consensus 23 srl~L~DCR~~ttg~M~y~Cde 44 (70)
T PF06651_consen 23 SRLFLTDCRKGTTGVMSYACDE 44 (70)
T ss_pred eeEeccccccCccceeeEEecc
Confidence 458899999999997 99954
No 409
>PF15096 G6B: G6B family
Probab=23.07 E-value=75 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred CcCCCeeEEEEeeCCCCeeEEEEEEEEcC
Q psy3125 55 QKRDAGIYECQVNTEPKMNMAIMLNVDDR 83 (163)
Q Consensus 55 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~ 83 (163)
...|+|++.|.... .....+.|.|...
T Consensus 82 s~GDSGTFfCkGr~--e~ESRT~LhVLGD 108 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQ--EEESRTVLHVLGD 108 (224)
T ss_pred hcCCccceEecCcc--cccceeeeeeecc
Confidence 56899999999632 2334456777753
Done!