RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3125
(163 letters)
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 90.3 bits (224), Expect = 2e-24
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V + W L + D R ++ + E ++ + D G
Sbjct: 28 CRVDQNDNTSLQWSN-PAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQ 85
Query: 62 YECQVNTEPKMNMAIMLNV 80
Y C + T P L V
Sbjct: 86 YTCSLFTMPVKTSKAYLTV 104
Score = 73.0 bits (179), Expect = 1e-17
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
L + D R ++ + E ++ + D G Y C + T P L V
Sbjct: 46 QTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTV 104
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 84.8 bits (209), Expect = 8e-22
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V + W L D R ++ E ++ I D
Sbjct: 58 LKCQVKDHEDSSLQWSN-PAQQTLYFGEKRALRDNRIQLVT-STPHELSISISNVALADE 115
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
G Y C + T P ++ V
Sbjct: 116 GEYTCSIFTMPVRTAKSLVTV 136
Score = 73.3 bits (179), Expect = 2e-17
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
L D R ++ E ++ I D G Y C + T P ++ V
Sbjct: 78 QTLYFGEKRALRDNRIQLVT-STPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTV 136
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 79.7 bits (196), Expect = 4e-20
Identities = 11/81 (13%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C + W+ I N Y ++++ ++H ++++ ++ + +D
Sbjct: 21 LKCVTSLRKNSSLQWLTPSGFTIFL-NEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDE 78
Query: 60 GIYECQVNTEPKMNMAIMLNV 80
G+Y+C ++ + + V
Sbjct: 79 GVYKCLHYSDSVSTKEVKVIV 99
Score = 62.7 bits (152), Expect = 2e-13
Identities = 8/59 (13%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
+ N Y ++++ ++H ++++ ++ + +D G+Y+C ++ + + V
Sbjct: 42 TIFLNEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIV 99
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 71.0 bits (174), Expect = 5e-17
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYEC 64
V W + +L + Y G +F +H + +SD W +++ Q +D G+Y+C
Sbjct: 31 VFWQDQENLVLNEV----YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
Query: 65 QVNTEPKMNMAIM 77
++ + M +
Sbjct: 87 IIHHKKPTGMIRI 99
Score = 57.9 bits (140), Expect = 6e-12
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 110 YTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
Y G +F +H + +SD W +++ Q +D G+Y+C ++ + M +
Sbjct: 45 YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRI 99
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 54.6 bits (131), Expect = 4e-10
Identities = 22/179 (12%), Positives = 50/179 (27%), Gaps = 35/179 (19%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARF------SVIHPQNSDEWNMKIDY 53
+ CT W + IL T S + + + I
Sbjct: 15 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74
Query: 54 AQKRDAGIYECQVNTEPKMNMAIMLNVDDR-------GRGARL----SAGPLLNFAFPDL 102
+ D+ Y C+V + + ++ + G+ L G
Sbjct: 75 LKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS--------- 125
Query: 103 LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ ++ + + + + + +D+G + C V + K+ I + V
Sbjct: 126 -SPSVQCRSPRGK------NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 51.7 bits (123), Expect = 1e-08
Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 37/182 (20%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDE------WNMKIDY 53
+ CT W + IL T + + + I
Sbjct: 14 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 73
Query: 54 AQKRDAGIYECQVNTEPKMNMAIMLNVDDR-------GRGARLSAGPLLNFAFPDLLTTN 106
+ D+ Y C+V + + ++ + G+ L+
Sbjct: 74 LKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTL--------------- 118
Query: 107 IYTYTGDARFSV--IHPQN---SDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ SV P+ + + + +D+G + C V + K+ I + V
Sbjct: 119 --ESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Query: 161 DG 162
Sbjct: 177 LA 178
Score = 37.1 bits (85), Expect = 0.001
Identities = 25/195 (12%), Positives = 50/195 (25%), Gaps = 58/195 (29%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
P V R +I + + + +D+G
Sbjct: 118 LESPPGSSPSVQCRSPRGKNI---------------------QGGKTLSVSQLELQDSGT 156
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARL---SAGPLLNFAFPDLLTTNIYTYTGDARFS 117
+ C V + K+ I + V + + + G + F+FP T T +G+ +
Sbjct: 157 WTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ 216
Query: 118 VIHPQNSDEW-------------------------------NMKIDYAQKRDAGIYECQV 146
+S W + Q +G +
Sbjct: 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL 276
Query: 147 -NTEPKMNMAIMLNV 160
K++ + L V
Sbjct: 277 EAKTGKLHQEVNLVV 291
Score = 31.3 bits (70), Expect = 0.12
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 55 QKRDAGIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGP--LLNFAFPDLLTTNIYTYT 111
Q +G + K++ + L V R + L + + +
Sbjct: 265 QYAGSGNLTLALEAKTGKLHQEVNLVV------MRATQLQKNLTCEVWGPTSPKLMLSLK 318
Query: 112 GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
+ + + S K + +AG+++C ++ ++ + + V
Sbjct: 319 LENK----EAKVSKR--EKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 50.6 bits (120), Expect = 3e-08
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 27/165 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
+ + W R L I + R S ++ + D G
Sbjct: 40 YSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK------EKDVLWFRPTLLNDTGN 93
Query: 62 YECQV-NTEPKMNMAIMLNVDDR------------------GRGARLSAGPLLNFAFPDL 102
Y C + NT +A L V + R++ P ++ FP
Sbjct: 94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC-PNVDGYFPSS 152
Query: 103 LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
+ I Y G + + + N+ A + G Y C V
Sbjct: 153 VKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197
Score = 32.5 bits (73), Expect = 0.048
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
++ + D G Y C + NT +A L V
Sbjct: 77 EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEV 113
Score = 28.3 bits (62), Expect = 1.2
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 16/68 (23%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ +P ++W I N G N+ A +
Sbjct: 145 VDGYFPSSVKPTITW-YMGCYKIQNFNNVIPEGM--------------NLSFLIALISNN 189
Query: 60 GIYECQVN 67
G Y C V
Sbjct: 190 GNYTCVVT 197
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 47.1 bits (112), Expect = 1e-07
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 15/93 (16%)
Query: 3 CTVMGLGRP------VSWMRKRDLHILTT------NIYTYTGDARFSVIHPQNSDE-WNM 49
C + ++W R + + Y+ + F ++
Sbjct: 22 CYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL 81
Query: 50 KIDYAQKRDAGIYECQVNTEPKMNM--AIMLNV 80
++ + D G Y C T P+ + I L V
Sbjct: 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 38.7 bits (90), Expect = 1e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 106 NIYTYTGDARFSVIHPQNSDE-WNMKIDYAQKRDAGIYECQVNTEPKMNM--AIMLNVDG 162
Y+ + F ++++ + D G Y C T P+ + I L V
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
Query: 163 K 163
K
Sbjct: 117 K 117
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 48.5 bits (114), Expect = 2e-07
Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 34/193 (17%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTG-------DARFSVIHPQNSDEWNMKIDY 53
C W + + + R S++ + + + ++
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 54 AQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRG------ARLSAGPLLNFA--------- 98
RDAG Y C N + + + + + G L
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS 472
Query: 99 --------FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
G ++ V +NS ++ ++ + D G Y C V
Sbjct: 473 YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532
Query: 151 KMN--MAIMLNVD 161
A+ + V+
Sbjct: 533 FYGETAAVYVAVE 545
Score = 41.1 bits (95), Expect = 6e-05
Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 32/186 (17%)
Query: 1 MACTVMGLGRP-VSWMRKRD-----LHILTTNIYTYTGDARFSV-IHPQNSDEWNMKIDY 53
+ C + K+ L I ++ R + I +++ I+
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 54 AQKRDAGIYECQVNTEP-----KMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIY 108
+ DAG Y CQ + ++ ++ + + P++ +
Sbjct: 192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 109 TYTGDA--------------------RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 148
+ R + +++ I +K DAG Y C ++
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 149 EPKMNM 154
+ ++
Sbjct: 312 DGQLQE 317
Score = 40.4 bits (93), Expect = 1e-04
Identities = 21/193 (10%), Positives = 48/193 (24%), Gaps = 43/193 (22%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C + R + +++ I +K DAG Y
Sbjct: 253 CRQSSGENCDVVVNTLGKRAPAFE-------GRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 63 ECQVNTE-----------------PKMNMAIMLNVDDRGRGARLS--------------- 90
C +++ + + V G+ ++
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Query: 91 ----AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
G + + + R S++ + + + ++ RDAG Y C
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425
Query: 147 NTEPKMNMAIMLN 159
N + + +
Sbjct: 426 NGDTLWRTTVEIK 438
Score = 39.2 bits (90), Expect = 3e-04
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 9 GRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68
W + + G ++ V +NS ++ ++ + D G Y C V
Sbjct: 472 SYEKYWCKWNN-TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530
Query: 69 EPKMN--MAIMLNVDDR 83
A+ + V++R
Sbjct: 531 GHFYGETAAVYVAVEER 547
Score = 38.1 bits (87), Expect = 8e-04
Identities = 20/174 (11%), Positives = 46/174 (26%), Gaps = 35/174 (20%)
Query: 11 PVSWMRKR-----DLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65
W R+ I + + R ++ + + + + I + D+G Y+C
Sbjct: 34 RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
Query: 66 VNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLL---------------------- 103
+ + + +G G +
Sbjct: 94 LGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153
Query: 104 -------TTNIYTYTGDARFSV-IHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
++ R + I +++ I+ + DAG Y CQ +
Sbjct: 154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDD 207
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 46.8 bits (110), Expect = 5e-07
Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 50/198 (25%)
Query: 3 CTVM---GLGRP-VSWMRKRDLHILTTNIYTYTGDA---------RFSVIHPQNSDEWNM 49
C V V W+ +D + + Y + R ++ ++ ++
Sbjct: 27 CVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL 86
Query: 50 KIDYAQKRDAGIYECQVNTEPK---MNMAIMLNVD---------DRGRGARL-------- 89
+ QK D GIY C++ + + M + L V G ++
Sbjct: 87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTE 146
Query: 90 ---------------SAGPLLNFAFPDLLTTNIYTYTGD--ARFSVIHPQNSDEWNMKID 132
++ + + + G R + + ++ ++K+
Sbjct: 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ 206
Query: 133 YAQKRDAGIYECQVNTEP 150
++ D GIY C +
Sbjct: 207 TVKESDQGIYTCSIYVGK 224
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 45.8 bits (108), Expect = 8e-07
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 12 VSWMR----KRDLHILTTNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQ 65
VSW + + + I + + F ++++ + + + A G Y C+
Sbjct: 26 VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR 85
Query: 66 V-NTEPKMNMAIMLNV 80
+ E ++ L+V
Sbjct: 86 MKLGETEVTKQEHLSV 101
Score = 40.4 bits (94), Expect = 7e-05
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 102 LLTTNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158
+ + + F ++++ + + + A G Y C++ E ++ L
Sbjct: 40 IGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
Query: 159 NV 160
+V
Sbjct: 100 SV 101
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 45.6 bits (108), Expect = 2e-06
Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 48/179 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C G P ++W R D T + G R V S ++ I + D+
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDG--RIEVKGQHGSS--SLHIKDVKLSDS 75
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
G Y+C+ + ++ L+++ + + T Y++ G+ S
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEYA---PKFISNQ-----------TIYYSWEGNPINIS 121
Query: 118 ------------------VIHPQNS---------DEWNMKIDYAQKRDAGIYECQVNTE 149
V+ +N+ + ++I D G Y C
Sbjct: 122 CDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules,
NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4
b.1.1.4 PDB: 1ie5_A
Length = 291
Score = 44.5 bits (105), Expect = 3e-06
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
C V G + +SW + L+ N R SV+ + + I A D
Sbjct: 22 FLCQVAGDAKDKDISWF-SPNGEKLSPN------QQRISVVWNDDDS-STLTIYNANIDD 73
Query: 59 AGIYECQVNTEP 70
AGIY+C V E
Sbjct: 74 AGIYKCVVTAED 85
Score = 39.1 bits (91), Expect = 3e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
R SV+ + + I A DAGIY+C V E
Sbjct: 47 PNQQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAED 85
Score = 35.2 bits (81), Expect = 0.005
Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 47/191 (24%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V+ P + W K ++ D RF V+ S+ ++I +K D
Sbjct: 120 IVCDVVSSLPPTIIWKHK-GRDVILKK------DVRFIVL----SNN-YLQIRGIKKTDE 167
Query: 60 GIYECQVNTEPKMNMA---IMLNVDDRGR--------GARLSAGPLLNF-----AFP--- 100
G Y C+ + + I + V+ A + G + FP
Sbjct: 168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227
Query: 101 -------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ-VNTEPKM 152
+ + H + D + I K D Y C N +
Sbjct: 228 MSWTKDGEPIENE-------EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ 280
Query: 153 NMAIMLNVDGK 163
+ +I L V K
Sbjct: 281 DASIHLKVFAK 291
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 44.0 bits (103), Expect = 7e-06
Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 34/182 (18%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
CT + + + + D + + ID + D G+
Sbjct: 246 CTARTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI- 119
Y C + + + V ++ P + F + + T R
Sbjct: 305 YTCAASSGLMTKKNSTFVRVHEK---------PFVAF-GSGMESLVEATVGERVRIPAKY 354
Query: 120 --HPQNSDEW-----------------NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159
+P +W + I +RD G Y + N K + +++
Sbjct: 355 LGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 160 VD 161
+
Sbjct: 415 LV 416
Score = 39.4 bits (91), Expect = 3e-04
Identities = 22/189 (11%), Positives = 44/189 (23%), Gaps = 39/189 (20%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C VS + + + D++ I AG+
Sbjct: 150 CLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK-----------GFTIPSYMISYAGMV 198
Query: 63 ECQV-NTEPKMNMAIMLNVDD------------------RGRGARLS------AGPLLNF 97
C+ + + + V G L+ ++F
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Query: 98 A--FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154
+P + D + + ID + D G+Y C +
Sbjct: 259 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 318
Query: 155 AIMLNVDGK 163
+ + V K
Sbjct: 319 STFVRVHEK 327
Score = 38.6 bits (89), Expect = 5e-04
Identities = 17/155 (10%), Positives = 38/155 (24%), Gaps = 29/155 (18%)
Query: 11 PVSWMRKRDLHILTTN--IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 67
+ W+ + + + + I D G Y+C
Sbjct: 58 DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLT----------IPKVIGNDTGAYKCFYRE 107
Query: 68 TEPKMNMAIMLNVDDRGRGARLSAGPLLNFA---------FPDLLTTNIYTYTGDARFSV 118
T+ + + + A +S + + P L + + + AR+
Sbjct: 108 TDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE 167
Query: 119 IHPQNSD-------EWNMKIDYAQKRDAGIYECQV 146
+ I AG+ C+
Sbjct: 168 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEA 202
Score = 32.8 bits (74), Expect = 0.037
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 18/87 (20%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ +G P + W + + L +N G + I +RD
Sbjct: 350 IPAKYLGYPPPEIKWYK--NGIPLESNHTIKAGH--------------VLTIMEVSERDT 393
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGR 85
G Y + N K + ++++
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVP 420
Score = 32.0 bits (72), Expect = 0.085
Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 50/201 (24%)
Query: 1 MACTVMGLGRP-VSWMR---------KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMK 50
+ CT ++W + +L ++ +D M+
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628
Query: 51 IDYAQKRDAGIYECQVN---TEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNI 107
+ A +D G Y C T+ + + L V +R ++ N
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA-PTITGNL-----------ENQ 676
Query: 108 YTYTGD-ARFSV------------------IHPQN-----SDEWNMKIDYAQKRDAGIYE 143
T G+ S + + N+ I +K D G+Y
Sbjct: 677 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 736
Query: 144 CQV-NTEPKMNMAIMLNVDGK 163
CQ + + ++G
Sbjct: 737 CQACSVLGCAKVEAFFIIEGA 757
Score = 31.7 bits (71), Expect = 0.091
Identities = 22/200 (11%), Positives = 46/200 (23%), Gaps = 56/200 (28%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNM----------- 49
CTV + P + W + + + + ++ +++
Sbjct: 445 CTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQF 504
Query: 50 -----------KIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDD-------------RG 84
+ + +Y+C+ N + I +V
Sbjct: 505 ALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ 564
Query: 85 RGARLS----------------AGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWN 128
L L +L T + + NS
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 129 --MKIDYAQKRDAGIYECQV 146
M++ A +D G Y C
Sbjct: 625 LIMELKNASLQDQGDYVCLA 644
Score = 27.4 bits (60), Expect = 2.5
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 131 IDYAQKRDAGIYECQVN 147
I D G Y+C
Sbjct: 90 IPKVIGNDTGAYKCFYR 106
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 43.6 bits (102), Expect = 8e-06
Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 37/194 (19%)
Query: 3 CTVMGLGRP-----VSWMRKRDLHILTTNIYTYTGDA--------RFSVIHPQNSDEWNM 49
C+ V+W + + IY + R + P +D +
Sbjct: 36 CSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD-GTI 94
Query: 50 KIDYAQKRDAGIYECQVNTEPKMNMAIMLNV-------------DDRGRGARLSAGPLLN 96
++ + D G+Y C+ T P N LN+ R + +L
Sbjct: 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154
Query: 97 F------AFPDLLTTNIYTYTGDARFSVIHPQN---SDEWNMKIDYAQKRDAGIYECQV- 146
P + + G+A + I N + ++ +++ C V
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214
Query: 147 NTEPKMNMAIMLNV 160
+ ++ LNV
Sbjct: 215 YHMDRFKESLTLNV 228
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 88 RLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
+ + G N A + R + P +D +++ + D G+Y C+
Sbjct: 54 KSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD-GTIRLSRLELEDEGVYICEFA 112
Query: 148 TEPKMNMAIMLNVD 161
T P N LN+
Sbjct: 113 TFPTGNRESQLNLT 126
Score = 30.9 bits (69), Expect = 0.15
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 30/175 (17%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
CT G+P VSW + L + +VI ++ +++
Sbjct: 157 CTSAN-GKPPSVVSW--ETRLKGEAEYQEIRNPNGTVTVIS-------RYRLVPSREAHQ 206
Query: 60 GIYECQV-NTEPKMNMAIMLNVD-------DRGRGARLSAGPLLNF-----AFPDLLTTN 106
C V + ++ LNV + G + A P T
Sbjct: 207 QSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP--PATE 264
Query: 107 IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ T + + + AG Y C+ N + + +N+
Sbjct: 265 YHWTTLNGSLPK-GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 42.1 bits (99), Expect = 3e-05
Identities = 29/189 (15%), Positives = 48/189 (25%), Gaps = 51/189 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C + G VSW + D +L DA + ++I +
Sbjct: 121 FECRINGSEPLQVSWYK--DGELLKD-------DANLQTS--FIHNVATLQILQTDQSHV 169
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
G Y C N + + L + + P ++ G+ F
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP-----------VSVDLALGESGTFK 218
Query: 118 VI-----------------------HPQNSDEWN--MKIDYAQKRDAGIYECQV-NTEPK 151
+ E + + K DAG Y C N K
Sbjct: 219 CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 152 MNMAIMLNV 160
+ + L V
Sbjct: 279 DSCSAQLGV 287
Score = 41.3 bits (97), Expect = 6e-05
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 30/166 (18%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C + G VSW +D L + ++ ++ + ++ I D
Sbjct: 404 LECELQGTPPFQVSW--HKDKRELRS-------GKKYKIM--SENFLTSIHILNVDSADI 452
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGR------GARLSAGPLLNF-----AFPDLLTT-- 105
G Y+C+ N + + R G + +
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF 512
Query: 106 --NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
+ + +N ++ A+ +AG Y CQ+ E
Sbjct: 513 KDKGEIVRESDNIWISYSENIAT--LQFSRAEPANAGKYTCQIKNE 556
Score = 37.9 bits (88), Expect = 9e-04
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 39/184 (21%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V G ++W K + + Y ++ ++ I+ D G
Sbjct: 27 CKVDGTPEIRIAWY-KEHTKLRSAPAYKMQ----------FKNNVASLVINKVDHSDVGE 75
Query: 62 YECQV-NTEPKMNMAIMLNVDDR-----------------GRGARLSAGPLLNFAFPDLL 103
Y C+ N+ + + +L + +R G L
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI---NGSEPLQ 132
Query: 104 TT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLN 159
+ + DA + ++I + G Y C N + + L
Sbjct: 133 VSWYKDGELLKDDANLQTS--FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190
Query: 160 VDGK 163
+
Sbjct: 191 LSEH 194
Score = 31.7 bits (72), Expect = 0.081
Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 36/178 (20%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C + G V W K + I ++ + + +V+ + D+G
Sbjct: 313 CKIGGSPEIKVLW-YKDETEIQESSKFRMSFVESVAVLE----------MYNLSVEDSGD 361
Query: 62 YECQV-NTEPKMNMAIMLNVDD--------------RGRGARLSAGPLLNFAFPDLLTT- 105
Y C+ N + + L V + +G L P +
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL---QGTPPFQVSW 418
Query: 106 --NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ ++ ++ + ++ I D G Y+C+ N + +
Sbjct: 419 HKDKRELRSGKKYKIM--SENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 42.0 bits (98), Expect = 3e-05
Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 29/166 (17%)
Query: 1 MACTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
+ C + ++W + + L Y + + + +
Sbjct: 247 IRCKAVH-VNHGFGLTW--ELENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARN 300
Query: 58 DAGIYECQV-NTEPKMNMAIMLNVDDRGR--------GARLSAGPLLNF-----AFPDLL 103
D G Y C + + ++ + ++G + F A+P +
Sbjct: 301 DTGYYTCSSSK---HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI- 356
Query: 104 TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
F + +++ K G Y +
Sbjct: 357 --RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEND 400
Score = 33.9 bits (77), Expect = 0.018
Identities = 11/66 (16%), Positives = 16/66 (24%), Gaps = 13/66 (19%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
V G W+ K + QN +M I + AG
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHF------------DLQNRGVVSMVILKMTETQAGE 117
Query: 62 YECQVN 67
Y +
Sbjct: 118 YLLFIQ 123
Score = 28.1 bits (62), Expect = 1.4
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 119 IHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
QN +M I + AG Y +
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQ 123
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 40.6 bits (94), Expect = 7e-05
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 26/175 (14%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDA--------RFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63
V W R ++ + T D RF ++ ++ I A+ D G Y
Sbjct: 39 VYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYF 98
Query: 64 CQVNTEPKMNMAIM-----LNVDDRGRGARLSAGPLLNFAFPDLLTTNIY---------T 109
+V + + L V + L P L+ ++ T
Sbjct: 99 FRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLT 158
Query: 110 YT-GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV---NTEPKMNMAIMLNV 160
++ S + P+ + + + + CQ+ + + LNV
Sbjct: 159 FSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 40.7 bits (95), Expect = 9e-05
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 39/161 (24%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P W + + + + S + I A D+G
Sbjct: 270 CPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---------LIIKDAVVEDSGK 320
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI- 119
Y C V N+ ++ +L V +A + T + A F+
Sbjct: 321 YLCVVNNSVGGESVETVLTV---------TAPL----SAKIDPPTQTVDFGRPAVFTCQY 367
Query: 120 --HPQNSDEW------------NMKIDYAQKRDAGIYECQV 146
+P + W ++I+ +K D G+Y+C V
Sbjct: 368 TGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFV 408
Score = 34.5 bits (79), Expect = 0.011
Identities = 24/170 (14%), Positives = 41/170 (24%), Gaps = 37/170 (21%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P + W+R + V P ++ DY Q+ A +
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAE------DYRQEVHAQV 114
Query: 62 YECQVN--------TEPKMNMAIMLNVDD--------RGRGARLSAGPLLNFAFP----- 100
Y C + + + + RG A + A
Sbjct: 115 YACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVS 174
Query: 101 ---DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA-GIYECQV 146
D D ++ V + I D Y+C+
Sbjct: 175 WHTDEEENYFPGAEYDGKYLV-----LPSGELHIREVGPEDGYKSYQCRT 219
Score = 34.5 bits (79), Expect = 0.011
Identities = 28/174 (16%), Positives = 46/174 (26%), Gaps = 46/174 (26%)
Query: 3 CTVMGLGRP--VSWMR-----KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ 55
C+V G P + W DL I T+ + + I+ +
Sbjct: 641 CSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV---------------LTIEAVE 685
Query: 56 KRDAGIYECQ-VNTEPKMNMAIMLNVDD--------------RGRGARL----SAGPLLN 96
AG + C N LNV +G A++ P
Sbjct: 686 ASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQ 745
Query: 97 FAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNM-KIDYAQKRDAGIYECQVNTE 149
+ + G+ + E +D QK + G Y C+
Sbjct: 746 VTW----KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAING 795
Score = 33.8 bits (77), Expect = 0.019
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C G P +SW + D + N G + + I D
Sbjct: 449 LKCVAGGNPTPEISW--ELDGKKIANNDRYQVGQ----YVTVNGDVVSYLNITSVHANDG 502
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDR 83
G+Y+C + + LNV
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYGL 527
Score = 33.4 bits (76), Expect = 0.031
Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 52/188 (27%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G VSWM+ D + I S ++I+ +K D G+
Sbjct: 365 CQYTGNPIKTVSWMK----------------DGKA--IGHSES---VLRIESVKKEDKGM 403
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGP-----------LLN---FAFP------ 100
Y+C V N + L + R + L P
Sbjct: 404 YQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW 463
Query: 101 ----DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMA 155
+ N G + + I D G+Y+C + +
Sbjct: 464 ELDGKKIANNDRYQVGQ----YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS 519
Query: 156 IMLNVDGK 163
LNV G
Sbjct: 520 AKLNVYGL 527
Score = 31.4 bits (71), Expect = 0.11
Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 41/179 (22%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA-GIYECQV---- 66
VSW + + Y D ++ V + I D Y+C+
Sbjct: 173 VSWHTDEEENYFPGAEY----DGKYLV-----LPSGELHIREVGPEDGYKSYQCRTKHRL 223
Query: 67 NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTT--------------------- 105
E +++ V + +++ A D+ T
Sbjct: 224 TGETRLSATKGRLVITEPISSA--VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR 281
Query: 106 ---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
I T + + I A D+G Y C V N+ ++ +L V
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Score = 26.1 bits (57), Expect = 6.3
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 49 MKIDYAQKRDAGIYECQV 66
M + + + ++
Sbjct: 1 MNMPNERLKWLMLFAAVA 18
Score = 26.1 bits (57), Expect = 6.3
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 129 MKIDYAQKRDAGIYECQV 146
M + + + ++
Sbjct: 1 MNMPNERLKWLMLFAAVA 18
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 39.4 bits (92), Expect = 1e-04
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 54/190 (28%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C + + ++ LT +N+ +I+ + D+
Sbjct: 23 LQCNLTSSSHTLMYSYWTKNGVELTAT--------------RKNASNMEYRINKPRAEDS 68
Query: 60 GIYECQVNTEPKMNMAIMLNVD--------------DRGRGARL---SAGPLLNFAFP-- 100
G Y C + + V + G+ A + S G +P
Sbjct: 69 GEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVG------YPHP 122
Query: 101 --------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR-DAGIYECQ-VNTEP 150
+ + I +G RF +I+ +N E + I Q D G YEC N+
Sbjct: 123 EWMWRKKENGVFEEISNSSG--RFFIINKENYTE--LNIVNLQITEDPGEYECNATNSIG 178
Query: 151 KMNMAIMLNV 160
+++ +L V
Sbjct: 179 SASVSTVLRV 188
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 39.5 bits (92), Expect = 1e-04
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C + G P V W RD IL T T ++I Q D
Sbjct: 22 LRCQLQVQGEPPEVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79
Query: 59 AGIYECQV 66
G Y+C V
Sbjct: 80 TGQYQCLV 87
Score = 27.6 bits (61), Expect = 1.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 128 NMKIDYAQKRDAGIYECQV 146
++I Q D G Y+C V
Sbjct: 69 QLRITSLQLSDTGQYQCLV 87
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 38.4 bits (89), Expect = 1e-04
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 16/88 (18%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYA 54
C + V+W ++ + D + + + +
Sbjct: 25 CHLSSTTAQVTQVNWEQQDQ------LLAICNADLGWHISPSFKDRVAPGPGLGLTLQSL 78
Query: 55 QKRDAGIYECQVNTEPKMNM--AIMLNV 80
D G Y C +T P I L V
Sbjct: 79 TVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 33.7 bits (77), Expect = 0.008
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 7/64 (10%)
Query: 104 TTNIYTYTGDARFSVIHP-----QNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM--AI 156
+ D + + + + D G Y C +T P I
Sbjct: 43 DQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRI 102
Query: 157 MLNV 160
L V
Sbjct: 103 FLEV 106
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 39.9 bits (93), Expect = 2e-04
Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 45/167 (26%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C W ++ + G+ + + + DA
Sbjct: 487 FTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRT-------------LTLFNVTRNDAR 533
Query: 61 IYECQVNTE--PKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
Y C + + + L+V GP P + + +G S
Sbjct: 534 AYVCGIQNSVSANRSDPVTLDV---------LYGP----DTPIISPPDSSYLSGANLNLS 580
Query: 118 VI---------------HPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
PQ + + I + G Y C V+
Sbjct: 581 CHSASNPSPQYSWRINGIPQQHTQ-VLFIAKITPNNNGTYACFVSNL 626
Score = 35.3 bits (81), Expect = 0.005
Identities = 23/178 (12%), Positives = 45/178 (25%), Gaps = 48/178 (26%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C W ++ + + + + D G Y
Sbjct: 311 CEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTL-------------TLLSVTRNDVGPY 357
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNF----AFPDLLTTNIYTYTG-DARFS 117
EC + N S +LN P + + Y G + S
Sbjct: 358 ECGIQ-----NEL----------SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLS 402
Query: 118 VI---HPQNSDEW-----------NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+P W + I ++++G+Y CQ N+ + + +
Sbjct: 403 CHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460
Score = 33.8 bits (77), Expect = 0.021
Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 47/163 (28%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C W ++ + G+ + + D Y
Sbjct: 133 CEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTL-TLFN------------VTRNDTASY 179
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAF-PDLLTTNIYTYTGDARFSVI-- 119
+C+ N AR S +LN + PD T + + + ++
Sbjct: 180 KCETQ-----NPV----------SARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 120 -----HPQNSDEW-----------NMKIDYAQKRDAGIYECQV 146
+P W + I ++G Y CQ
Sbjct: 225 CHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQA 267
Score = 32.2 bits (73), Expect = 0.064
Identities = 20/164 (12%), Positives = 38/164 (23%), Gaps = 21/164 (12%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNM------KIDYAQ 55
+ SW K + I Y + + P S + I
Sbjct: 21 VHNLPQHLFGYSW-YKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNII 79
Query: 56 KRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPD----LLT------- 104
+ D G Y V +N + S + D T
Sbjct: 80 QNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD 139
Query: 105 TNIYTYTGDARFSVIH--PQNSDEWNMKIDYAQKRDAGIYECQV 146
+ + V ++ + + + D Y+C+
Sbjct: 140 ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183
Score = 29.9 bits (67), Expect = 0.37
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 14/110 (12%)
Query: 51 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPD----LLT- 104
I ++++G+Y CQ N+ + + + + S + D T
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTC 489
Query: 105 ------TNIYTYTGDARFSVIHPQNSDEWN--MKIDYAQKRDAGIYECQV 146
T + V N + + + DA Y C +
Sbjct: 490 EPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGI 539
Score = 28.8 bits (64), Expect = 0.83
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 20/116 (17%)
Query: 48 NMKIDYAQKRDAGIYECQVN---TEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLT 104
+ I ++G Y CQ + T + V +++ D +
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVA 308
Query: 105 ---------TNIYTYTGDARFSV-----IHPQNSDEWNMKIDYAQKRDAGIYECQV 146
T + + V + N + + + D G YEC +
Sbjct: 309 LTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNR---TLTLLSVTRNDVGPYECGI 361
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 38.7 bits (90), Expect = 2e-04
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYEC 64
++W+ + I Y + + +V + ++I K D G Y
Sbjct: 32 LTWLHTTN-----QKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86
Query: 65 QVNTEPKMNMAIMLNVDDR 83
++ E + I + V +
Sbjct: 87 RMLHETEDQWKITMEVYEM 105
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 104 TTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAI 156
I Y + + +V + ++I K D G Y ++ E + I
Sbjct: 39 NQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKI 98
Query: 157 MLNV 160
+ V
Sbjct: 99 TMEV 102
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 39.1 bits (91), Expect = 3e-04
Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 43/187 (22%)
Query: 1 MACTV-MGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
C+ W+ + + D R V N+ I + D
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPA-------DGRRFVSQTTG----NLYIAKTEASD 169
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTT----NIYTYTG-D 113
G Y C + + + ++LS + + + Y TG
Sbjct: 170 LGNYSCFAT-----SHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 114 ARFSVI---HPQNSDEW----------------NMKIDYAQKRDAGIYECQV-NTEPKMN 153
+P +W + I D G YEC+ N + +
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT 284
Query: 154 MAIMLNV 160
+ +
Sbjct: 285 YQGRIII 291
Score = 32.1 bits (73), Expect = 0.070
Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 53/167 (31%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P + W ++ T+ + + I D G
Sbjct: 229 CFAFGNPVPQIKW--RKLDGSQTSKWLSSEP---------------LLHIQNVDFEDEGT 271
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFS--- 117
YEC+ N + + + + A P + D++T D R+S
Sbjct: 272 YECEAENIKGRDTYQGRIII---------HAQP----DWLDVITDTEADIGSDLRWSCVA 318
Query: 118 ---------------VIHPQNSDEWN---MKIDYAQKRDAGIYECQV 146
+ QN E + ++ D+G+Y+C
Sbjct: 319 SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVA 365
Score = 27.5 bits (61), Expect = 2.0
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 28/118 (23%)
Query: 51 IDYAQKRDAGIYEC----------------QVNTEPKMNMAIMLNVD-DRGRGARLSAGP 93
+ + +DAG Y+C + + + V G G + P
Sbjct: 66 SNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP 125
Query: 94 LLNFAFPDLLTTNIYTYTGDARFSVIHPQNS-----DEWNMKIDYAQKRDAGIYECQV 146
+P L Y + + + I N+ I + D G Y C
Sbjct: 126 --PPHYPAL----SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA 177
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 38.8 bits (90), Expect = 3e-04
Identities = 30/174 (17%), Positives = 46/174 (26%), Gaps = 34/174 (19%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ CT G P V W + + Y + ++D
Sbjct: 21 LTCTYSGFSSPRVEWKFVQGSTT---ALVCYNSQITAPYADRVTFSSSGITFSSVTRKDN 77
Query: 60 GIYECQVN---TEPKMNMAIMLNVD--------------DRGRGARL-----SAGPLLNF 97
G Y C V+ + ++I L V G A L P +
Sbjct: 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137
Query: 98 A-----FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ L T I P++ D + D D+G Y CQ
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGD---LIFDPVTAFDSGEYYCQA 188
Score = 30.3 bits (68), Expect = 0.22
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 99 FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN---TEPKMNMA 155
F TT + Y + ++D G Y C V+ + ++
Sbjct: 37 FVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS 96
Query: 156 IMLNV 160
I L V
Sbjct: 97 IHLTV 101
Score = 28.8 bits (64), Expect = 0.67
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 1 MACTVM-GLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C+ G SW + + T I P++ D + D D
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGD---LIFDPVTAFD 180
Query: 59 AGIYECQV-NT--EPKMNMAIMLNVDD 82
+G Y CQ N + A ++ +
Sbjct: 181 SGEYYCQAQNGYGTAMRSEAAHMDAVE 207
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 39.1 bits (91), Expect = 3e-04
Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 52/174 (29%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G P +W+R ++ L + Y+ G + N+ I D+
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS-------------NLLISNVTDDDS 287
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTG-DARFS 117
G Y C V ++ + L V P +N+Y Y D F
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVP---PWFLNHP-----------SNLYAYESMDIEFE 333
Query: 118 ------------------VIHPQN----SDEWNMKIDYAQKRDAGIYECQVNTE 149
V+ P + N++I K D G Y+C E
Sbjct: 334 CAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENE 387
Score = 36.4 bits (84), Expect = 0.002
Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 39/184 (21%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V+G P + W + + ++ GD+R V ++I Q D+
Sbjct: 141 LKCEVIGDPMPTIHWQKNQ------QDLNPIPGDSRVVV-----LPSGALQISRLQPGDS 189
Query: 60 GIYECQVNTE--PKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIY-------TY 110
G+Y C + + + R L P +
Sbjct: 190 GVYRCSARNPASTRTGNEAEVRILSDPGLHR----QLYFLQRPSNVIAIEGKDAVLECCV 245
Query: 111 TGDARFSV--------IHPQNS-----DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAI 156
+G S I ++ N+ I D+G Y C V ++ +
Sbjct: 246 SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 157 MLNV 160
L V
Sbjct: 306 ELTV 309
Score = 32.9 bits (75), Expect = 0.040
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 54/178 (30%)
Query: 1 MACTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
+ C+ R + W K+D IL D R + + N+ K
Sbjct: 41 LNCSAES-DRGVPVIKW--KKDGLILALG-----MDDRKQQLPNGSLLIQNILHSRHHKP 92
Query: 58 DAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTT---NIYTYTG-D 113
D G+Y+C+ + + G+ +S + A P + +I + G
Sbjct: 93 DEGLYQCEA----SLGDS----------GSIISRTAKVMVAGPLRFLSQTESITAFMGDT 138
Query: 114 ARFSVI---HPQNSDEW----------------------NMKIDYAQKRDAGIYECQV 146
P + W ++I Q D+G+Y C
Sbjct: 139 VLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA 196
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 39.3 bits (91), Expect = 3e-04
Identities = 19/176 (10%), Positives = 48/176 (27%), Gaps = 26/176 (14%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C + + ++W + L Y + + + + D
Sbjct: 247 IRCKAVHVNHGFGLTWEL--ENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARND 301
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNF-------------AFPDLLTT 105
G Y C + P + + ++ + ++G ++ A+P +
Sbjct: 302 TGYYTCSSSKHP--SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--- 356
Query: 106 NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
F + +++ K G Y N + + LN+
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 35.1 bits (80), Expect = 0.006
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P +W + D T T R + + ++ ++ +
Sbjct: 429 CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFL 488
Query: 62 YECQV 66
+C
Sbjct: 489 VKCCA 493
Score = 30.8 bits (69), Expect = 0.16
Identities = 13/161 (8%), Positives = 30/161 (18%), Gaps = 32/161 (19%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
+ +W ++ K G
Sbjct: 348 VRFKAYPQIRCTW--TFSRKSFPCEQKGLDNGY-------------SISKFCNHKHQPGE 392
Query: 62 YECQV-NTEPKMNMAIMLNVDD------RGRGARLS----AGPLLN---FAFPDLLTTNI 107
Y N + + LN+ ++ S PL + D
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452
Query: 108 YTYTGDARFSVI--HPQNSDEWNMKIDYAQKRDAGIYECQV 146
T + ++ ++ + +C
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCA 493
Score = 30.8 bits (69), Expect = 0.21
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 14/83 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
V G W+ K + QN +M I + AG
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHF------------DLQNRGVVSMVILKMTETQAGE 117
Query: 62 YECQV-NTEPKMNMAIMLNVDDR 83
Y + + + +++ +
Sbjct: 118 YLLFIQSEATNYTILFTVSIRNT 140
Score = 25.4 bits (55), Expect = 9.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 119 IHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
QN +M I + AG Y +
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQ 123
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 38.9 bits (90), Expect = 3e-04
Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 33/166 (19%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C + ++W + ++T + S IH + A+ D+G
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTE--------QASRIHQHKE---KLWFVPAKVEDSG 75
Query: 61 IYECQV-NTEPKMNMAIMLNVDDR------------------GRGARLSAGPLLNFAFPD 101
Y C V N+ + + I + L + F +
Sbjct: 76 HYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 102 LLTTNIYTYTGDARFSVIHPQ-NSDEWNMKIDYAQKRDAGIYECQV 146
+ Y + + + + + + ++ G Y C
Sbjct: 136 NELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHA 181
Score = 29.3 bits (65), Expect = 0.52
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ S IH + A+ D+G Y C V N+ + + I
Sbjct: 53 QASRIHQHKE---KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 96
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 38.3 bits (89), Expect = 3e-04
Identities = 32/175 (18%), Positives = 49/175 (28%), Gaps = 53/175 (30%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
C V G + +SW + L+ N R SV+ + + I A D
Sbjct: 22 FLCQVAGDAKDKDISWF-SPNGEKLSPN------QQRISVVWNDDDS-STLTIYNANIDD 73
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLN-FAFPDLLT--TNIYTYTG-DA 114
AGIY+C V G + A + F T G DA
Sbjct: 74 AGIYKCVVT-----AED----------GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDA 118
Query: 115 RF------------------SVIHPQNSDEWNM------KIDYAQKRDAGIYECQ 145
+ + + + +I +K D G Y C+
Sbjct: 119 VIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Score = 30.2 bits (68), Expect = 0.22
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
R SV+ + + I A DAGIY+C V
Sbjct: 47 PNQQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVT 82
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 38.4 bits (89), Expect = 4e-04
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNM------KIDYAQKRDAGIYECQ 65
++W+ L + T V +P+ N ++ + D G Y Q
Sbjct: 31 ITWLFNETS--LAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQ 88
Query: 66 VNTEPK 71
++T+
Sbjct: 89 ISTKTS 94
Score = 33.4 bits (76), Expect = 0.017
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 103 LTTNIYTYTGDARFSVIHPQNSDEWNM------KIDYAQKRDAGIYECQVNTEPK 151
L + T V +P+ N ++ + D G Y Q++T+
Sbjct: 40 LAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTS 94
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 38.6 bits (89), Expect = 4e-04
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 3 CTVMGLGRPV--SWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
CT+ + V W++ + + Q + + I A+ D+G
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQET----LTISSARVDDSG 265
Query: 61 IYECQVNTEP-KMNMAIMLNVDDRG 84
++ C N N+ L V ++G
Sbjct: 266 VFMCYANNTFGSANVTTTLKVVEKG 290
Score = 32.0 bits (72), Expect = 0.072
Identities = 19/189 (10%), Positives = 43/189 (22%), Gaps = 46/189 (24%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C + S + + T + A ++ + + +
Sbjct: 113 CPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAY------------HRLC 160
Query: 62 YECQ--VNTEPKMNMAIMLNVDD------------------RGRGARLS---AGPLLNFA 98
C + + L V + +G + +
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 99 F------PDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP-K 151
P + R + + + I A+ D+G++ C N
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQE---TLTISSARVDDSGVFMCYANNTFGS 277
Query: 152 MNMAIMLNV 160
N+ L V
Sbjct: 278 ANVTTTLKV 286
Score = 26.2 bits (57), Expect = 6.2
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 23/83 (27%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C V W K + + + + + A+ G Y
Sbjct: 34 CIDPD---FVRWTFKTYFNEMV------------------ENKKNEWIQEKAEATRTGTY 72
Query: 63 ECQVNTEPKMNMAIMLNVDDRGR 85
C + + +I + V D +
Sbjct: 73 TCSNSN--GLTSSIYVFVRDPAK 93
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 38.2 bits (89), Expect = 4e-04
Identities = 30/170 (17%), Positives = 46/170 (27%), Gaps = 53/170 (31%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
CT +G + W + I++T + S + I A DAGIY
Sbjct: 24 CTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS----------RLTIYNANIEDAGIY 73
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLN-FAFPDLLT--TNIYTYTG-DARFS- 117
CQ + G A +L + + G DA
Sbjct: 74 RCQAT-----DAK----------GQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 118
Query: 118 -----------------VIHPQNSDEWNM------KIDYAQKRDAGIYEC 144
+ + + + M +I K D GIY C
Sbjct: 119 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 168
Score = 30.9 bits (70), Expect = 0.11
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V P VSW+ + + T + D RF+++ N++I K D
Sbjct: 116 VVCRVSSSPAPAVSWLYH-NEEVTTIS------DNRFAML-----ANNNLQILNINKSDE 163
Query: 60 GIYEC 64
GIY C
Sbjct: 164 GIYRC 168
Score = 26.3 bits (58), Expect = 4.8
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 145
R V + + I A DAGIY CQ
Sbjct: 46 TQRVVVQ--KEGVRSRLTIYNANIEDAGIYRCQ 76
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 38.5 bits (89), Expect = 4e-04
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 39/187 (20%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
CT+ + +W ++ + Y F+ + + I A+ D+G
Sbjct: 233 CTIKDVSSSVYSTW-KRENSQTKLQEKYNSWHHGDFNYE-----RQATLTISSARVNDSG 286
Query: 61 IYECQV-NTEPKMNMAIMLNVDDRGR---------GARLSAGPLLNF-----AFP----- 100
++ C NT N+ L V D+G ++ G ++ AFP
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346
Query: 101 ------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153
T Y S I + + + + + G Y V N++
Sbjct: 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSE----LHLTRLKGTEGGTYTFLVSNSDVNAA 402
Query: 154 MAIMLNV 160
+A + V
Sbjct: 403 IAFNVYV 409
Score = 38.5 bits (89), Expect = 5e-04
Identities = 26/185 (14%), Positives = 46/185 (24%), Gaps = 28/185 (15%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ +P W T Y S I + + + + +
Sbjct: 333 LIVEYEAFPKPEHQQW--IYMNRTFTDKWEDYPKSENESNIRYVSE----LHLTRLKGTE 386
Query: 59 AGIYECQV-NTEPKMNMAIMLNVD--------DRGRGARL----SAGP------LLNFAF 99
G Y V N++ +A + V+ DR L + P
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
Query: 100 PDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIML 158
+ ++ S P ID + + G EC+ N K +
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Query: 159 NVDGK 163
G
Sbjct: 507 AFKGN 511
Score = 32.3 bits (73), Expect = 0.062
Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 42/186 (22%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNI-YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C + ++ L ++ + A + + +
Sbjct: 136 CPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY------------HRLC 183
Query: 62 YECQ--VNTEPKMNMAIMLNVDDRGRGA----------RLSAGPLLNF-----AFPDLLT 104
C + ++ +L V + L G +
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS--SS 241
Query: 105 TNIYTYTGDARFSVIHPQNSDEWN---------MKIDYAQKRDAGIYECQV-NTEPKMNM 154
+++ + NS + I A+ D+G++ C NT N+
Sbjct: 242 VYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV 301
Query: 155 AIMLNV 160
L V
Sbjct: 302 TTTLEV 307
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 38.4 bits (89), Expect = 4e-04
Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 43/193 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G P +SW++ N + G+ R I ++ W++ ++ D
Sbjct: 143 FRCPAAGNPTPSISWLK---------NGREFRGEHRIGGIKLRHQQ-WSLVMESVVPSDR 192
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLL----------------------- 95
G Y C V N + L+V +R + L
Sbjct: 193 GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP 252
Query: 96 -------NFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-N 147
+ + Y + + + + + + + DAG Y C N
Sbjct: 253 HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN 312
Query: 148 TEPKMNMAIMLNV 160
+ + + L V
Sbjct: 313 SIGFSHHSAWLVV 325
Score = 38.4 bits (89), Expect = 5e-04
Identities = 26/187 (13%), Positives = 47/187 (25%), Gaps = 60/187 (32%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G G P W++ D L + G +++ A D+
Sbjct: 30 CPPPG-GGPMGPTVWVK--DGTGLVPSERVLVGP-------------QRLQVLNASHEDS 73
Query: 60 GIYECQVNTEPKMNMAIMLNV------DDRGRGARLSAGPLLNFAFPDLLTTNIYTYT-- 111
G Y C+ ++ + V D G + ++ P
Sbjct: 74 GAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLL 133
Query: 112 --------------------------------GDARFSVIHPQNSDEWNMKIDYAQKRDA 139
G+ R I ++ W++ ++ D
Sbjct: 134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ-WSLVMESVVPSDR 192
Query: 140 GIYECQV 146
G Y C V
Sbjct: 193 GNYTCVV 199
Score = 27.7 bits (61), Expect = 2.0
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 125 DEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
+++ A D+G Y C+ ++ + V
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRV 94
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 38.0 bits (88), Expect = 6e-04
Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 46/175 (26%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C + VS MR+ +L +Y ++ I A+ D+
Sbjct: 111 CLITD-PALKDSVSLMREGGRQVLRKTVYFFSPWR-------------GFIIRKAKVLDS 156
Query: 60 GIYEC--QVNTEPKMNMAIMLNVDD------------------RGRGARL----SAGPL- 94
Y C VN + I L V+ RG A++ + +
Sbjct: 157 NTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG 216
Query: 95 LNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
N T D + + + + ++ +DAGIY C + +
Sbjct: 217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRA----LSLNAVDFQDAGIYSCVASND 267
Score = 36.5 bits (84), Expect = 0.002
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C+ + + KR L D + + + + ++ +DAGIY
Sbjct: 208 CSATNAEVGFNVILKRGDTKLEI---PLNSDFQDNYYKKVRA----LSLNAVDFQDAGIY 260
Query: 63 ECQV-NTEPKMNMAIMLNVDDRG 84
C N + V +
Sbjct: 261 SCVASNDVGTRTATMNFQVVESH 283
Score = 31.5 bits (71), Expect = 0.10
Identities = 24/126 (19%), Positives = 34/126 (26%), Gaps = 17/126 (13%)
Query: 51 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLL-----------NFA 98
A ++ G Y C + I L V D L A +
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT 114
Query: 99 FPDLLTTNIYTYTGDARFSVIHPQN--SDEWNMKIDYAQKRDAGIYEC--QVNTEPKMNM 154
P L ++ R + S I A+ D+ Y C VN +
Sbjct: 115 DPAL-KDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTST 173
Query: 155 AIMLNV 160
I L V
Sbjct: 174 GIWLKV 179
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 37.8 bits (88), Expect = 7e-04
Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 47/178 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G +P V W R D I + I DA
Sbjct: 24 LVCKVTGHPKPIVKWYR---------QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD-ARFS 117
+Y+ + N ++ L V+ A++ L ++ G+
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVP---AKIHLPKTLEG------MGAVHALRGEVVSIK 125
Query: 118 V--------------------------IHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
+ + S + + +++DAG Y
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 37.8 bits (87), Expect = 7e-04
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 1 MACTVMGLGRP------VSWMRKRDLHILTTNIYTY----TGDARFSVIHPQNSDE---W 47
+ C + ++W R + + T + R + + E
Sbjct: 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNA 79
Query: 48 NMKIDYAQKRDAGIYECQVNTEP 70
++++ + D G Y C T P
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFP 102
Score = 32.4 bits (73), Expect = 0.050
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 110 YTGDARFSVIHPQNSDE---WNMKIDYAQKRDAGIYECQVNTEP 150
Y+ R + + E ++++ + D G Y C T P
Sbjct: 59 YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFP 102
Score = 28.1 bits (62), Expect = 1.3
Identities = 24/177 (13%), Positives = 43/177 (24%), Gaps = 32/177 (18%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G GRP ++W + T+ +V + + + D
Sbjct: 139 CVSTG-GRPPAQITW-HSDLGGMPNTSQVPGFLSGTVTVTS-------LWILVPSSQVDG 189
Query: 60 GIYECQV---NTEPKMNMAIMLNVDDRGR-------GARLSAGPLLNF-----AFPDLLT 104
C+V + E + + L V + P T
Sbjct: 190 KNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP-EPT 248
Query: 105 TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
++ T Q + + I K C V N + + V
Sbjct: 249 GYNWSTTMGPLPPFAVAQGA---QLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 37.6 bits (87), Expect = 7e-04
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 41/177 (23%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G P +SW++ + + R I ++ W++ ++ D
Sbjct: 35 FRCPAAGNPTPSISWLK--NGREFRG-------EHRIGGIKLRHQQ-WSLVMESVVPSDR 84
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDR-------------------GRGARL----SAGPLL 95
G Y C V N + L+V +R G +
Sbjct: 85 GNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP 144
Query: 96 NFAFPDLLTTNIYTYTGDARFSV------IHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ + + N D V I + +++ +RD G Y C+
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA 201
Score = 30.3 bits (68), Expect = 0.21
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
G+ R I ++ W++ ++ D G Y C V N + L+V
Sbjct: 57 RGEHRIGGIKLRHQQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.4 bits (86), Expect = 8e-04
Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 3 CTVMGLGRP------VSWMRKRDLHILTTNIYT----YTGDARFSVIHPQNSD---EWNM 49
C + ++W R + + T Y+ R + + + ++
Sbjct: 21 CYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASL 80
Query: 50 KIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80
++ + D G Y C T P+ + ++ + +
Sbjct: 81 RMFGLRVEDEGSYTCLFVTFPQGSRSVDIWL 111
Score = 33.5 bits (76), Expect = 0.020
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 109 TYTGDARFSVIHPQNSD---EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
+Y+ R + + + ++++ + D G Y C T P+ + ++ + +
Sbjct: 57 SYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWL 111
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 37.9 bits (88), Expect = 8e-04
Identities = 34/189 (17%), Positives = 51/189 (26%), Gaps = 47/189 (24%)
Query: 1 MACTVM-GLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C G +W+ + N+ I +K D
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG-------------NLYIAKVEKSD 168
Query: 59 AGIYECQ----VNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYT----- 109
G Y C V + L + R G P + FP+ + T
Sbjct: 169 VGNYTCVVTNTVTNHKVLGPPTPLIL--RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 226
Query: 110 --YTGD---------------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPK 151
G+ AR + H N ++I Q+ DAG YEC N+ K
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGK 283
Query: 152 MNMAIMLNV 160
L
Sbjct: 284 NVAKGQLTF 292
Score = 34.4 bits (79), Expect = 0.010
Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 50/167 (29%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C +G P + W R+ D + + + ++I Q+ DAG
Sbjct: 227 CFALGNPVPTILW-RRADGKPIARKARRHKSNG-------------ILEIPNFQQEDAGS 272
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVI- 119
YEC N+ K L A P + ++ +
Sbjct: 273 YECVAENSRGKNVAKGQLTF---------YAQP----NWVQIINDIHVAMEESVFWECKA 319
Query: 120 --HPQNSDEW------------------NMKIDYAQKRDAGIYECQV 146
P+ + W + I DAG+Y+C
Sbjct: 320 NGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVA 366
Score = 26.3 bits (58), Expect = 5.6
Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 43/169 (25%)
Query: 1 MACTVMGLGRP-VSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
++C V G +P + W D+ I Y+ + + +P + +D
Sbjct: 28 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL-INNP------------NKTQD 74
Query: 59 AGIYEC----------------QVNTEPKMNMAIMLNVD-DRGRGARLSAGPLLNFAFPD 101
AG Y+C Q V RG+G L GP +
Sbjct: 75 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP--PPHSGE 132
Query: 102 LLTT----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
L +Y + RF + N+ I +K D G Y C V
Sbjct: 133 LSYAWIFNEYPSYQDNRRFVS-----QETGNLYIAKVEKSDVGNYTCVV 176
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 37.5 bits (87), Expect = 9e-04
Identities = 32/172 (18%), Positives = 47/172 (27%), Gaps = 53/172 (30%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
CT +G + W + I++T + S + I A DAGIY
Sbjct: 26 CTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT----------IYNANIEDAGIY 75
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLN-FAFPDLLT--TNIYTYTG-DARFSV 118
CQ + G A +L + + G DA
Sbjct: 76 RCQAT-----DAK----------GQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120
Query: 119 I---HPQNSDEW---------------------NMKIDYAQKRDAGIYECQV 146
P + W N++I K D GIY C+
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172
Score = 34.4 bits (79), Expect = 0.011
Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 63/194 (32%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V P VSW+ + + T + D RF+++ N++I K D
Sbjct: 118 VVCRVSSSPAPAVSWLYH-NEEVTTIS------DNRFAML-----ANNNLQILNINKSDE 165
Query: 60 GIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLT-----TNIYTYTG-D 113
GIY C+ A RG ++ P ++ N G +
Sbjct: 166 GIYRCEGR-----VEA---------RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEE 211
Query: 114 ARFS--------------------------VIHPQNSDEWNMKIDYAQKRDAGIYECQ-V 146
FS ++ N+ + + D G Y C+
Sbjct: 212 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT---ELTVRNIINSDGGPYVCRAT 268
Query: 147 NTEPKMNMAIMLNV 160
N + L V
Sbjct: 269 NKAGEDEKQAFLQV 282
Score = 27.9 bits (62), Expect = 1.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 131 IDYAQKRDAGIYECQVN 147
I A DAGIY CQ
Sbjct: 64 IYNANIEDAGIYRCQAT 80
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 37.2 bits (86), Expect = 9e-04
Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 34/188 (18%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
++C G P V W + + + + + + D
Sbjct: 24 LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT---GITFKSVTREDT 80
Query: 60 GIYECQVN---TEPKMNMAIMLNVD--------------DRGRGARL----SAG-PLLNF 97
G Y C V+ + + L V G A L G P +
Sbjct: 81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY 140
Query: 98 A-FPD---LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKM 152
F D + T T V++P + D D G Y C+ N
Sbjct: 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG---ELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 153 NMAIMLNV 160
+ + +
Sbjct: 198 MTSNAVRM 205
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 37.2 bits (86), Expect = 0.001
Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 40/175 (22%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
G V+++ + I ++ + +N+ M ++ Q D G
Sbjct: 25 QAEKLSGNAKVNYI-FNEKEI--------FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75
Query: 62 YECQV-NTEPKMNMAIMLNVDDR---GRGARLSAGPLLNFAFPDLLTTNIYTYT--GDAR 115
Y Q+ + + + ++L D + A + P + + T +
Sbjct: 76 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135
Query: 116 F------------------------SVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
H + I K+DAGIYE +
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 190
Score = 32.2 bits (73), Expect = 0.050
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C V + + + W K + I + + + I K+D
Sbjct: 136 LKCKVANIKKETHIVWY-KDEREISVDEKHDFK------------DGICTLLITEFSKKD 182
Query: 59 AGIYECQV 66
AGIYE +
Sbjct: 183 AGIYEVIL 190
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P ++W R D T + G R V ++ I + D+G
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDG--RIEVK--GQHGSSSLHIKDVKLSDSGR 171
Query: 62 YECQV 66
Y+C+
Sbjct: 172 YDCEA 176
Score = 35.6 bits (82), Expect = 0.003
Identities = 26/168 (15%), Positives = 46/168 (27%), Gaps = 37/168 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+C G P +SW R N + ++ + + + D
Sbjct: 24 FSCRASGSPEPAISWFR---------NGKLIEENEKYILKG----SNTELTVRNIINSDG 70
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDR-------------GRGARL----SAGPLLNFAF-- 99
G Y C+ N + L V + L P+ +
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKR 130
Query: 100 -PDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
D T + D R V ++ I + D+G Y+C+
Sbjct: 131 AVDGFTFTEGDKSLDGRIEVK--GQHGSSSLHIKDVKLSDSGRYDCEA 176
Score = 26.7 bits (59), Expect = 3.5
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
+ ++ + + + D G Y C+
Sbjct: 48 NEKYILKG----SNTELTVRNIINSDGGPYVCRAT 78
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 36.2 bits (83), Expect = 0.001
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHP--QNSDEWNMKIDYAQKRDA 59
C +G P + W + + IH + ID + D
Sbjct: 43 CEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDT 102
Query: 60 GIYEC 64
G YEC
Sbjct: 103 GTYEC 107
Score = 25.8 bits (56), Expect = 5.3
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 122 QNSDEWNMKIDYAQKRDAGIYEC 144
+ ID + D G YEC
Sbjct: 85 HQHAASTISIDTLVEEDTGTYEC 107
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 37.0 bits (85), Expect = 0.001
Identities = 17/162 (10%), Positives = 40/162 (24%), Gaps = 31/162 (19%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V G G W +L T + + + + + +
Sbjct: 180 CQVEGRGLEQAGW-ILTELEQSATVMKSGGLPSLGLTL-----------ANVTSDLNRKN 227
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAG----------------PLLNFAFPDLLT 104
C N + +++ +NV +A P L + F +
Sbjct: 228 VTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL 287
Query: 105 TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
++ + ++++ + G Y
Sbjct: 288 NE-TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 328
Score = 31.6 bits (71), Expect = 0.100
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ +V G P + W+ + +L + +T + ++++ +
Sbjct: 266 IPFSVDGQPAPSLRWLF--NGSVLNETSFIFTEFLEPAANETVRHG--CLRLNQPTHVNN 321
Query: 60 GIYECQV 66
G Y
Sbjct: 322 GNYTLLA 328
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 37.3 bits (86), Expect = 0.001
Identities = 27/186 (14%), Positives = 50/186 (26%), Gaps = 45/186 (24%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C + VS +R R ++ Y+++ I A+ +
Sbjct: 111 CLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWH-------------GFTIHRAKFIQS 156
Query: 60 GIYECQ--VNTEPKMNMAIMLNVDDRGRGA----------RLSAGPLLNF-----AFPDL 102
Y+C + M+++I L V G G +
Sbjct: 157 QDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD-- 214
Query: 103 LTTNIYTYTGDARFSVIHPQNSDEWNM-------KIDYAQKRDAGIYECQV-NTEPKMNM 154
+ I Q+ N +D + AG Y C N + K +
Sbjct: 215 -VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST 273
Query: 155 AIMLNV 160
++ V
Sbjct: 274 SMFFRV 279
Score = 36.9 bits (85), Expect = 0.001
Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 34/173 (19%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C G V W H + D S++ + A ++ G Y
Sbjct: 26 CVGNG---SVEWDGPPSPHWTLYS------DGSSSILS----------TNNATFQNTGTY 66
Query: 63 ECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLL-----NFAFP-----DLLTTNIYTYT 111
C + AI L V D R + A ++ + P +L +
Sbjct: 67 RCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVR 126
Query: 112 GDARFSVIHP--QNSDEWNMKIDYAQKRDAGIYECQ--VNTEPKMNMAIMLNV 160
R + H S I A+ + Y+C + M+++I L V
Sbjct: 127 VRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV 179
Score = 36.9 bits (85), Expect = 0.002
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 8/86 (9%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ C+ + + + L D + + + +D + AG
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAI---PQQSDFHNNRYQKVLT----LNLDQVDFQHAG 258
Query: 61 IYECQV-NTEPKMNMAIMLNVDDRGR 85
Y C N + K + ++ V +
Sbjct: 259 NYSCVASNVQGKHSTSMFFRVVESAG 284
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 35.7 bits (82), Expect = 0.001
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 11 PVSWMRKRDLHILTTNIYTYTGD--------ARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
P+ W + TN T + +R+ + N + ++ I D G Y
Sbjct: 28 PMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTY 87
Query: 63 ECQVNTEPKMN 73
C++ MN
Sbjct: 88 CCRIQFPGLMN 98
Score = 33.7 bits (77), Expect = 0.007
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 109 TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 153
TY +R+ + N + ++ I D G Y C++ MN
Sbjct: 54 TYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMN 98
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 36.8 bits (85), Expect = 0.001
Identities = 24/198 (12%), Positives = 51/198 (25%), Gaps = 57/198 (28%)
Query: 1 MACTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C V + + + W K + I + + + I K+D
Sbjct: 26 LKCKVANIKKETHIVWY-KDEREISVDEKHDFKDGICT------------LLITEFSKKD 72
Query: 59 AGIYEC---------------QVNTEPKMNM---------AIMLNVDDRGRGARLSAGPL 94
AGIYE ++ M A L + G +L +
Sbjct: 73 AGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVT 132
Query: 95 LNFAFPDL--------LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ + R ++ ++I+ D G Y ++
Sbjct: 133 YYVEDLKVNWSHNGSAIRY-------SDRVKTGV--TGEQIWLQINEPTPNDKGKYVMEL 183
Query: 147 -NTEPKMNMAIMLNVDGK 163
+ + + L+
Sbjct: 184 FDGKTGHQKTVDLSGQAY 201
Score = 35.7 bits (82), Expect = 0.004
Identities = 15/149 (10%), Positives = 35/149 (23%), Gaps = 37/149 (24%)
Query: 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV----DDRGRGA 87
R ++ ++I+ D G Y ++ + + + L+ +
Sbjct: 152 SDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 209
Query: 88 RLSAGPLLNFAFPDLLT---TNIYTYTGD-ARFSV------------------------- 118
RL + +L + G +
Sbjct: 210 RLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHC 269
Query: 119 -IHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ + I+ D+G Y V
Sbjct: 270 NLKFEAGRTAYFTINGVSTADSGKYGLVV 298
Score = 30.7 bits (69), Expect = 0.19
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 1 MACTVMGLGRP-VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C V G P VSW++ ++ L D + + + I+ D
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKAL----------ASDDHCN-LKFEAGRTAYFTINGVSTAD 290
Query: 59 AGIYECQV 66
+G Y V
Sbjct: 291 SGKYGLVV 298
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 36.4 bits (84), Expect = 0.002
Identities = 18/182 (9%), Positives = 39/182 (21%), Gaps = 50/182 (27%)
Query: 3 CTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
V V+W I ++ ++I+ D
Sbjct: 24 SFVTY-YVEDLKVNWS-HNGSAIRYSDRVKTGVTGEQIW----------LQINEPTPNDK 71
Query: 60 GIYECQV-NTEPKMNMAIMLNV----DDRGRGARLSAGPLLNFAFPDLLT---TNIYTYT 111
G Y ++ + + + L+ + RL + +L +
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 112 GD-ARFSV--------------------------IHPQNSDEWNMKIDYAQKRDAGIYEC 144
G + + + I+ D+G Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 145 QV 146
V
Sbjct: 192 VV 193
Score = 32.9 bits (75), Expect = 0.023
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G P VSW++ + L ++ + I+ D+
Sbjct: 137 LTCNVWGDPPPEVSWLK--NEKALAQ-------TDHCNLKF-EAGRTAYFTINGVSTADS 186
Query: 60 GIYECQV 66
G Y V
Sbjct: 187 GKYGLVV 193
Score = 27.1 bits (60), Expect = 2.3
Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162
R ++ ++I+ D G Y ++ + + + L+
Sbjct: 47 SDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA 95
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 35.4 bits (81), Expect = 0.002
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 1 MACTVMG---LGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK 56
+ V G L P V W + + + + + + + + I AQ
Sbjct: 24 FSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA--SKVYLFELHITDAQP 81
Query: 57 RDAGIYECQV-NTEPKMNMAIMLNVDD 82
G Y C+V + L V +
Sbjct: 82 AFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 29.2 bits (65), Expect = 0.25
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 122 QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161
+ + I AQ G Y C+V + L V
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 35.7 bits (82), Expect = 0.002
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 11 PVSWMR------KRDLHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
W R ++ TN + TY +R+++ + + ++ I+ + + D+G+Y
Sbjct: 29 TTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLY 88
Query: 63 ECQVNTEPKMN 73
C+V N
Sbjct: 89 CCRVEIPGWFN 99
Score = 34.1 bits (78), Expect = 0.005
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 109 TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 153
TY +R+++ + + ++ I+ + + D+G+Y C+V N
Sbjct: 55 TYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFN 99
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 36.4 bits (84), Expect = 0.002
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 20/116 (17%)
Query: 51 IDYAQKRDAGIYECQVNTEPKMNM--AIMLNVDDRGRGARLSAGPLLNFAFPDLLT-TNI 107
+ +DAG Y C+VN L+V D + S + + T+
Sbjct: 69 FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQ 128
Query: 108 YTYTGD-ARFSVI---HP-------------QNSDEWNMKIDYAQKRDAGIYECQV 146
G + P + + + Y G Y C V
Sbjct: 129 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHV 184
Score = 28.7 bits (64), Expect = 0.83
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 131 IDYAQKRDAGIYECQVN 147
+ +DAG Y C+VN
Sbjct: 69 FNAVHVKDAGFYVCRVN 85
Score = 28.3 bits (63), Expect = 1.1
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 42 QNSDEWNMKIDYAQKRDAGIYECQV 66
+ + + Y G Y C V
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHV 184
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 35.0 bits (81), Expect = 0.002
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
M C V GL P +SW D + D+ ++ +N ++ I+ RDA
Sbjct: 29 MDCKVSGLPTPDLSWQL--DGKPVRP-------DSAHKMLVRENGVH-SLIIEPVTSRDA 78
Query: 60 GIYECQ-VNTEPKMNMAIMLNVDDR 83
GIY C N + + ++ L V +
Sbjct: 79 GIYTCIATNRAGQNSFSLELVVAAK 103
Score = 31.6 bits (72), Expect = 0.044
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ-VNTEPKMNMAIMLNVDGK 163
D+ ++ +N ++ I+ RDAGIY C N + + ++ L V K
Sbjct: 53 DSAHKMLVRENGVH-SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.1 bits (81), Expect = 0.003
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
G RP V W K + T+ ++ T D + + A + D+G
Sbjct: 46 VPFQGKPRPQVVWT-KGGAPLDTSRVHVRTSD-----------FDTVFFVRQAARSDSGE 93
Query: 62 YECQV-NTEPKMNMAIMLNVDDR 83
YE V K I + V ++
Sbjct: 94 YELSVQIENMKDTATIRIRVVEK 116
Score = 27.7 bits (62), Expect = 0.86
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 119 IHPQNSDE-WNMKIDYAQKRDAGIYECQV 146
+H + SD + A + D+G YE V
Sbjct: 70 VHVRTSDFDTVFFVRQAARSDSGEYELSV 98
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 35.1 bits (80), Expect = 0.003
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
CT + + + D + + ID + D G+
Sbjct: 30 CTARTELNVGIDFNWEYPSSKHQHKKLV-NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 88
Query: 62 YECQV-NTEPKMNMAIMLNVDDRG 84
Y C + + + V ++
Sbjct: 89 YTCAASSGLMTKKNSTFVRVHEKP 112
Score = 28.9 bits (64), Expect = 0.37
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 99 FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIM 157
+P + D + + ID + D G+Y C + +
Sbjct: 46 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 105
Query: 158 LNVDGK 163
+ V K
Sbjct: 106 VRVHEK 111
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 35.0 bits (80), Expect = 0.003
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 1 MACTVMG---LGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK 56
V L +P + W + + + + + F + M+I A+
Sbjct: 27 FIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS--RVYTFEMQIIKAKD 84
Query: 57 RDAGIYECQV 66
AG Y C+V
Sbjct: 85 NFAGNYRCEV 94
Score = 28.0 bits (62), Expect = 0.83
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 122 QNSDEWNMKIDYAQKRDAGIYECQV 146
+ M+I A+ AG Y C+V
Sbjct: 70 SRVYTFEMQIIKAKDNFAGNYRCEV 94
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 35.6 bits (82), Expect = 0.003
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 40/176 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G P + W++ + + R +N W++ ++ D
Sbjct: 39 FRCPAGGNPMPTMRWLK--NGKEFKQ-------EHRIGGYKVRNQH-WSLIMESVVPSDK 88
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGAR-LSAGPLLN---------------FAFP-- 100
G Y C V N +N L+V +R R L AG N ++
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP 148
Query: 101 -------DLLTTNIYTYTGDARFSVI---HPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ Y G V+ +S+ + + + DAG Y C+V
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 204
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 35.5 bits (82), Expect = 0.003
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ G P ++W ++ ++ N + + S + + +++DA
Sbjct: 124 IKIPFSGKPDPVITW--QKGQDLIDNN-------GHYQ-VIVTRSFTSLVFPNGVERKDA 173
Query: 60 GIYECQ-VNTEPKMNMAIMLNVDD 82
G Y N + L+V D
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVAD 197
Score = 35.1 bits (81), Expect = 0.005
Identities = 28/176 (15%), Positives = 47/176 (26%), Gaps = 51/176 (28%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G +P V W R + D I + I DA
Sbjct: 24 LVCKVTGHPKPIVKWYR--QGKEIIA-------DGLKYRIQEFKGGYHQLIIASVTDDDA 74
Query: 60 GIYEC---------------QVNTEPKMN----MAIMLNVD-DRGRGARLSAGPLLNFAF 99
+Y+ +V K++ + M V RG +
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF---SGK 131
Query: 100 P----------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 145
P DL+ N + + S + + +++DAG Y
Sbjct: 132 PDPVITWQKGQDLIDNN-------GHYQ-VIVTRSFTSLVFPNGVERKDAGFYVVC 179
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 34.4 bits (79), Expect = 0.003
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYEC 64
++W+ H I Y ++ ++ + + + I +K D G Y
Sbjct: 36 ITWL-----HTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYM 90
Query: 65 QVNTEPKMNMAIMLNVDD 82
+V E + + I L V D
Sbjct: 91 RVLRETENELKITLEVFD 108
Score = 32.5 bits (74), Expect = 0.020
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 104 TTNIYTYTGDARFSVIHPQ-------NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAI 156
I Y ++ ++ + + + I +K D G Y +V E + + I
Sbjct: 43 NQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKI 102
Query: 157 MLNV 160
L V
Sbjct: 103 TLEV 106
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 35.4 bits (81), Expect = 0.004
Identities = 31/195 (15%), Positives = 52/195 (26%), Gaps = 43/195 (22%)
Query: 3 CTVMGLGRP-----VSWMRKR-DLHILTTNIYTYTGDARFSVIHPQ------------NS 44
C + W+ D I+ I Y+GD + +P S
Sbjct: 22 CKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKS 81
Query: 45 DEWNMKIDYAQKRDAGIYECQVNTEPKMNMA-IMLNVDDRGRGARLS------AGPLLNF 97
+ ++ + Q D G Y+C+V P + +L V + G R G
Sbjct: 82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKL 141
Query: 98 A------FPDLLTTNIYTYT-----GDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
L + + + A +G Y C V
Sbjct: 142 KCEPKEGSLPL------QFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTV 195
Query: 147 -NTEPKMNMAIMLNV 160
N + L+V
Sbjct: 196 QNRVGSDQCMLRLDV 210
Score = 35.4 bits (81), Expect = 0.004
Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQ 122
C+ P+ + + ++ ++ ++ + G F+ +
Sbjct: 21 PCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVK 80
Query: 123 NSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMA-IMLNVDGK 163
+ D ++ + Q D G Y+C+V P + +L V K
Sbjct: 81 SGD-ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 34.2 bits (79), Expect = 0.004
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+AC G P V+W I + RF + D + I QK+D
Sbjct: 25 VACAFTGEPTPEVTWS-CGGRKIHSQE------QGRFHIE--NTDDLTTLIIMDVQKQDG 75
Query: 60 GIYECQV 66
G+Y +
Sbjct: 76 GLYTLSL 82
Score = 27.7 bits (62), Expect = 0.80
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
RF + D + I QK+D G+Y +
Sbjct: 49 QEQGRFHIE--NTDDLTTLIIMDVQKQDGGLYTLSL 82
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 35.5 bits (82), Expect = 0.004
Identities = 27/173 (15%), Positives = 43/173 (24%), Gaps = 48/173 (27%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ G P VSW R D +++T V + + I K ++
Sbjct: 25 FEAHISGFPVPEVSWFR--DGQVIST-------STLPGVQISFSDGRAKLTIPAVTKANS 75
Query: 60 GIYECQ-VNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTG-DARFS 117
G Y + N + L V ++ G R
Sbjct: 76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQRL-----------QSMTVRQGSQVRLQ 124
Query: 118 V------------------IHP-------QNSDEWNMKIDYAQKRDAGIYECQ 145
V I Q D +++ I A D+G Y
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 35.5 bits (81), Expect = 0.004
Identities = 24/189 (12%), Positives = 47/189 (24%), Gaps = 39/189 (20%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C VS + + + D++ I AG+
Sbjct: 31 CLGSISNLNVSLCARYPEKRFVPDGNRISWDSK-----------KGFTIPSYMISYAGMV 79
Query: 63 ECQ--VNTEPKMNMAIMLNVDD-----------------RGRGARL--------SAGPLL 95
C+ +N E ++ ++ V G L + G
Sbjct: 80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 96 NFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNM 154
N+ +P + D + + ID + D G+Y C +
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 155 AIMLNVDGK 163
+ + V
Sbjct: 200 STFVRVHED 208
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 34.5 bits (79), Expect = 0.004
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 11 PVSWMR------KRDLHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
+ W + K + +L T+ +++++ E ++ I + D+G+Y
Sbjct: 29 SMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVY 88
Query: 63 ECQVNTEPKMN 73
C++ N
Sbjct: 89 CCRIEVPGWFN 99
Score = 33.4 bits (76), Expect = 0.009
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 92 GPLLNFAFPD-LLTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 148
G N LL T+ +++++ E ++ I + D+G+Y C++
Sbjct: 35 GSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94
Query: 149 EPKMN 153
N
Sbjct: 95 PGWFN 99
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 35.4 bits (81), Expect = 0.004
Identities = 24/164 (14%), Positives = 41/164 (25%), Gaps = 45/164 (27%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C+ PV W +R + SV+ + D G Y
Sbjct: 22 CSGSA---PVVW--ERMSQEPPQEMAKAQDGTFSSVLT----------LTNLTGLDTGEY 66
Query: 63 ECQVN----TEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTG-DARFS 117
C N E + + V D P + F D I+ +
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPD----------PTVGFLPNDAEELFIFLTEITEITIP 116
Query: 118 --VIHPQ-------------NSDEWNMKIDYAQKRDAGIYECQV 146
V PQ ++ + ++ + Y C+
Sbjct: 117 CRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKT 160
Score = 32.8 bits (74), Expect = 0.032
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 3 CTVMGLGRP-VSWMRKR-DLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C V+G W R + L + + D + + + I A+ D+G
Sbjct: 203 CIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS-------ILHIPSAELEDSG 255
Query: 61 IYECQVNT---EPKMNMAIMLNVDDRG 84
Y C V + + AI + V + G
Sbjct: 256 TYTCNVTESVNDHQDEKAINITVVESG 282
Score = 28.9 bits (64), Expect = 0.68
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 27/125 (21%)
Query: 47 WNMKIDYAQKRDAGIYECQ--VNTEPKMNMAIMLNVDD----------------RGRGAR 88
++ + ++ + Y C+ + + A + +G
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Query: 89 L----SAGPLLNF--AFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 142
L ++NF +P + + D + + S + I A+ D+G Y
Sbjct: 201 LMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS---ILHIPSAELEDSGTY 257
Query: 143 ECQVN 147
C V
Sbjct: 258 TCNVT 262
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 35.5 bits (82), Expect = 0.005
Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 50/189 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C + G V W K + I ++ + + +++ D+
Sbjct: 119 YECKIGGSPEIKVLWY-KDETEIQESSKFRMS----------FVESVAVLEMYNLSVEDS 167
Query: 60 GIYECQ-VNTEPKMNMAIMLNVDD--------------RGRGARLSAGPLLNFAFP---- 100
G Y C+ N + + L V + +G L P
Sbjct: 168 GDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL---QGTPPFQV 224
Query: 101 ------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMN 153
L + ++ ++ + ++ I D G Y+C+ N
Sbjct: 225 SWHKDKRELRS-------GKKYKIM--SENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275
Query: 154 MAIMLNVDG 162
+ +
Sbjct: 276 CVGSITLKA 284
Score = 32.4 bits (74), Expect = 0.046
Identities = 24/172 (13%), Positives = 39/172 (22%), Gaps = 50/172 (29%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C V G ++W + + I Y T + + + K DA
Sbjct: 25 FKCHVTGTAPIKITWAKD-NREIRPGGNYKMTLVENTATLT----------VLKVTKGDA 73
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSV 118
G Y C N K + + L V P R+
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGV---------QEPPRFIKKLEPSRIVKQ---DEHTRYEC 121
Query: 119 ------------------IHP-------QNSDEWNMKIDYAQKRDAGIYECQ 145
I +++ D+G Y C+
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Score = 25.9 bits (57), Expect = 6.4
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 130 KIDYAQKRDAGIYECQV 146
+ K DAG Y C
Sbjct: 64 TVLKVTKGDAGQYTCYA 80
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 33.9 bits (78), Expect = 0.005
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C G P +SW++ + D R I Q + ++I + D
Sbjct: 28 LKCKATGDPLPVISWLK--EGFTFPGR------DPRA-TIQEQGT----LQIKNLRISDT 74
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRG 84
G Y C ++ + + + +L+V + G
Sbjct: 75 GTYTCVATSSSGETSWSAVLDVTESG 100
Score = 27.4 bits (61), Expect = 0.89
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
I + D G Y C ++ + + + +L+V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 35.2 bits (81), Expect = 0.005
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
M C G P ++W +D + T+ + + ++ ++I+ +++ D
Sbjct: 128 MLCAASGNPDPEITW--FKDFLPVDTS------NNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 60 GIYEC 64
G YEC
Sbjct: 180 GKYEC 184
Score = 32.5 bits (74), Expect = 0.035
Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 45/174 (25%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRD 58
C G RP + W + ++ RF VI + ++I + RD
Sbjct: 26 FICQATGDPRPKIVWNK--KGKKVSNQ--------RFEVIEFDDGSGSVLRIQPLRTPRD 75
Query: 59 AGIYECQ-VNTEPKMNMAIMLNVDDR---------------------GRGARLSAGPLLN 96
IYEC N +++++ L V R A +
Sbjct: 76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA--- 132
Query: 97 FAFPDLLTT------NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144
PD T + T + R + + ++I+ +++ D G YEC
Sbjct: 133 SGNPDPEITWFKDFLPVDTSNNNGRIKQLR--SESIGALQIEQSEESDQGKYEC 184
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 34.2 bits (78), Expect = 0.006
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSD--EWN---------MKIDYAQKRDAG 60
+W + + +I+ Y + + +W + I D G
Sbjct: 35 FTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNG 94
Query: 61 IYECQVNTEPKMN---MAIMLNV 80
+ C V P + + L V
Sbjct: 95 TFTCDVKNPPDIVGKTSQVTLYV 117
Score = 30.3 bits (68), Expect = 0.14
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 130 KIDYAQKRDAGIYECQVNTEPKMN---MAIMLNV 160
I D G + C V P + + L V
Sbjct: 84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 33.8 bits (78), Expect = 0.006
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ C + + PV W ++L ++S+ Q + + + +D+G
Sbjct: 28 LRCVLSSVAAPVKWCY--GNNVLRP-------GDKYSLR--QEGAMLELVVRNLRPQDSG 76
Query: 61 IYECQVNTE 69
Y C +
Sbjct: 77 RYSCSFGDQ 85
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 35.2 bits (81), Expect = 0.006
Identities = 32/191 (16%), Positives = 48/191 (25%), Gaps = 48/191 (25%)
Query: 1 MACTV-MGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C GL P + WM I T D R S ++ +D
Sbjct: 136 LQCNPPPGLPSPVIFWMSSSMEPI--------TQDKRVSQ-----GHNGDLYFSNVMLQD 182
Query: 59 A-GIYECQV----NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD 113
Y C + L V R A +F +P ++ G
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNPFTLKV----LTTRGVAERTPSFMYPQGTASSQMVLRGM 238
Query: 114 -ARFSVI---HPQNSDEW-------------------NMKIDYAQKRDAGIYECQV-NTE 149
I P W ++I + D+G Y C N
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM 298
Query: 150 PKMNMAIMLNV 160
+ I + V
Sbjct: 299 GSIRHTISVRV 309
Score = 30.2 bits (68), Expect = 0.25
Identities = 22/170 (12%), Positives = 42/170 (24%), Gaps = 53/170 (31%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G+ P ++W + L ++ + + ++I + D+G
Sbjct: 244 CIASGVPTPDIAW--YKKGGDLPSDKAKFENFNK------------ALRITNVSEEDSGE 289
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFS--- 117
Y C N + I + V A P + D I D R
Sbjct: 290 YFCLASNKMGSIRHTISVRV---------KAAP----YWLDEPKNLILAPGEDGRLVCRA 336
Query: 118 ---------------VIHPQNSDEW------NMKIDYAQKRDAGIYECQV 146
+ + + Q +Y+C
Sbjct: 337 NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT 386
Score = 27.9 bits (62), Expect = 1.7
Identities = 25/167 (14%), Positives = 40/167 (23%), Gaps = 37/167 (22%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P W + D R S+ + + + + G
Sbjct: 39 CEAKGNPAPSFHW-TRNSRFFNIAK------DPRVSMRRRSGTLVIDFRSGGRPEEYEGE 91
Query: 62 YEC----------------QVNTEPKMNMAIMLNVD-DRGRGARLSAGPLLNFAFPDLLT 104
Y+C QV+ P + V G L P P +
Sbjct: 92 YQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNP--PPGLPSPVI 149
Query: 105 T----NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA-GIYECQV 146
++ T D R S ++ +D Y C
Sbjct: 150 FWMSSSMEPITQDKRVSQ-----GHNGDLYFSNVMLQDMQTDYSCNA 191
Score = 26.8 bits (59), Expect = 3.6
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 15/68 (22%)
Query: 1 MACTVMGLGRP-VSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C G +P V WM L N + Q
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD-------------TIIFRDTQISS 378
Query: 59 AGIYECQV 66
+Y+C
Sbjct: 379 RAVYQCNT 386
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 34.4 bits (79), Expect = 0.007
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C+V G+ P + W +D ++ + + + + + ++ DA
Sbjct: 22 LNCSVEGMEEPDIQW--VKDGAVVQNL-------DQLYIPVSEQHWIGFLSLKSVERSDA 72
Query: 60 GIYECQV 66
G Y CQV
Sbjct: 73 GRYWCQV 79
Score = 28.2 bits (63), Expect = 1.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ + + + + ++ DAG Y CQV
Sbjct: 46 LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 33.6 bits (77), Expect = 0.007
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
++C G P + W ++D +++T D+R + +N ++I YA+ D
Sbjct: 28 LSCVATGSPVPTILW--RKDGVLVSTQ------DSRIKQL--ENGV---LQIRYAKLGDT 74
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGR 85
G Y C + + + V + G
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQEFGV 101
Score = 27.4 bits (61), Expect = 1.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 131 IDYAQKRDAGIYEC 144
I YA+ D G Y C
Sbjct: 66 IRYAKLGDTGRYTC 79
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 34.5 bits (78), Expect = 0.008
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 1 MACTVMGLGRP-VSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEW---------NM 49
M C V+W T Y + I +S+ N+
Sbjct: 156 MTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215
Query: 50 KIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 80
I A+ DAG C++ + +++ +
Sbjct: 216 VIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 34.1 bits (77), Expect = 0.014
Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 45/191 (23%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP--- 70
W + + + + GD N +++ + +D G Y CQV
Sbjct: 58 WQGEGLGFVESDSYKESFGDFLGRA-SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116
Query: 71 ---KMNMAIMLNVDDR------------------GRGARL----SAGP------LLNFAF 99
+++L V G + + F
Sbjct: 117 EFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTF 176
Query: 100 PDLLTTNIYTYTGDARFSVIHPQNSDEW---------NMKIDYAQKRDAGIYECQV-NTE 149
+ T Y + I +S+ N+ I A+ DAG C++ +
Sbjct: 177 FENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236
Query: 150 PKMNMAIMLNV 160
+++ +
Sbjct: 237 GELDADRSSTI 247
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 34.9 bits (80), Expect = 0.008
Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 45/169 (26%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C G P W + + + + + + I A D+
Sbjct: 232 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN------DRVKQVSG---TLIIKDAVVEDS 282
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFS- 117
G Y C V N+ ++ +L V +A + T + A F+
Sbjct: 283 GKYLCVVNNSVGGESVETVLTV---------TAPL----SAKIDPPTQTVDFGRPAVFTC 329
Query: 118 -----------------VIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
I S ++I+ +K D G+Y+C V +
Sbjct: 330 QYTGNPIKTVSWMKDGKAIGHSES---VLRIESVKKEDKGMYQCFVRND 375
Score = 29.5 bits (66), Expect = 0.47
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 128 NMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ I A D+G Y C V N+ ++ +L V
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Score = 26.1 bits (57), Expect = 7.4
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C G P + W+R + V P ++ DY Q+ A
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAE------DYRQEVHA 77
Query: 60 GIYEC 64
+Y C
Sbjct: 78 QVYAC 82
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 34.5 bits (79), Expect = 0.009
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 43/173 (24%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V G P + W +D ++TN V + + + +++D
Sbjct: 29 LNCKVEGKPEPTIEW--FKDGEPVSTN-----EKKSHRVQFKDGALFFYRTMQGKKEQDG 81
Query: 60 GIYEC----------------QVNTEPKMNMAIMLNVD-DRGRGARLSAGPLLNFAFPD- 101
G Y C Q+ + +G A L GP P+
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP--KGIPEP 139
Query: 102 ----------LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144
L ++ +R ++ D N+ I + D G Y+C
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIV-----DGGNLLISNVEPIDEGNYKC 187
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 34.0 bits (78), Expect = 0.009
Identities = 31/195 (15%), Positives = 54/195 (27%), Gaps = 65/195 (33%)
Query: 1 MACTVMGLGRP-VSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C V P VSW+ ++ ++ N + + N++I K D
Sbjct: 22 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-------------NLQILNINKSD 68
Query: 59 AGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLT-----TNIYTYTG- 112
GIY C+ A RG ++ P ++ N G
Sbjct: 69 EGIYRCEGR-----VEA---------RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114
Query: 113 DARFS--------------------------VIHPQNSDEWNMKIDYAQKRDAGIYECQ- 145
+ FS ++ N+ + + D G Y C+
Sbjct: 115 EMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT---ELTVRNIINSDGGPYVCRA 171
Query: 146 VNTEPKMNMAIMLNV 160
N + L V
Sbjct: 172 TNKAGEDEKQAFLQV 186
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 34.5 bits (79), Expect = 0.010
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 17/125 (13%)
Query: 39 IHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNF 97
+ + N+ I G Y C + I + V + L+A
Sbjct: 124 FKFFHWN-SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPL 182
Query: 98 A-------------FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144
+Y ++ S E +I A++ D+G+Y C
Sbjct: 183 LEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--YQILTARREDSGLYWC 240
Query: 145 QVNTE 149
+ TE
Sbjct: 241 EAATE 245
Score = 31.4 bits (71), Expect = 0.11
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 30/138 (21%)
Query: 40 HPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAF 99
+ + +I A D+G Y CQ + + I L + G LL
Sbjct: 41 TATQTSTPSYRITSASVNDSGEYRCQRGLSGR-SDPIQLEI---------HRGWLLLQVS 90
Query: 100 PDLLT----------------TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 143
+ T Y + + + + N+ I G Y
Sbjct: 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGK--AFKFFHWN-SNLTILKTNISHNGTYH 147
Query: 144 CQV-NTEPKMNMAIMLNV 160
C + I + V
Sbjct: 148 CSGMGKHRYTSAGISVTV 165
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 34.6 bits (79), Expect = 0.010
Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 28/126 (22%)
Query: 49 MKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIY 108
M D GIY C V + + +++ ++ R LS
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 109 TYTGDARF----SVIHPQNSDEW------------------------NMKIDYAQKRDAG 140
G RF + + M ++ Q D G
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 141 IYECQV 146
Y Q+
Sbjct: 180 TYTFQL 185
Score = 34.2 bits (78), Expect = 0.011
Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 40/177 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
G V+++ + I Y D +N+ M ++ Q D
Sbjct: 128 WMQAEKLSGNAKVNYI-FNEKEIFEGPKYKMHID--------RNTGIIEMFMEKLQDEDE 178
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDRGR---GARLSAGPLLNFAFPDLLTTNIYTYT--GD 113
G Y Q+ + + + ++L D + A + P + + T +
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECN 238
Query: 114 ARFSV----IHPQNSDEW--------------------NMKIDYAQKRDAGIYECQV 146
I + W + I K+DAGIYE +
Sbjct: 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 295
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 33.9 bits (77), Expect = 0.014
Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 45/171 (26%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
R ++W + + + + Q+ + + A + D+G
Sbjct: 47 LWASVSPRINLTWHKNDSARTVPGE--------EETRMWAQDG---ALWLLPALQEDSGT 95
Query: 62 YECQV-NTEPKMNMAIMLNVDDR----------------GRGARLSAGPLLNFA--FPDL 102
Y C N M+I L V + L L F D+
Sbjct: 96 YVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV 155
Query: 103 LTTNIYTY-------TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
I Y + +F + + + DAG Y C +
Sbjct: 156 ---KIQWYKDSLLLDKDNEKFLSVRGTTH----LLVHDVALEDAGYYRCVL 199
Score = 28.9 bits (64), Expect = 0.75
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 15/68 (22%)
Query: 1 MACTVMGLGRP-VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
++ + W + L + G ++ + D
Sbjct: 145 LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-------------HLLVHDVALED 191
Query: 59 AGIYECQV 66
AG Y C +
Sbjct: 192 AGYYRCVL 199
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 33.8 bits (77), Expect = 0.014
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDA------RFSVIHPQNSD-EWNMKIDYAQKRDAGIYEC 64
V W + I + R ++ Q S ++I + +DAG+Y C
Sbjct: 38 VYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRC 97
Query: 65 QVNTEPKMNMAIMLNV 80
++ I + V
Sbjct: 98 MISYGGADYKRITVKV 113
Score = 33.4 bits (76), Expect = 0.018
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 115 RFSVIHPQNSD-EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
R ++ Q S ++I + +DAG+Y C ++ I + V
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKV 113
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 33.6 bits (77), Expect = 0.015
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
M C +G P + W ++ + + Y+ + ++I+ +++ D
Sbjct: 130 MTCKAIGNPTPNIYW--IKNQTKVDMSNPRYS------------LKDGFLQIENSREEDQ 175
Query: 60 GIYECQ 65
G YEC
Sbjct: 176 GKYECV 181
Score = 30.1 bits (68), Expect = 0.20
Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 49/173 (28%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P + W + + ++ +R++V+ RD
Sbjct: 28 CAARGDPPPSIVWRK--NGKKVSGT------QSRYTVLEQPGGISILRIEPVRAGRDDAP 79
Query: 62 YECQVNTEPKMNMAIMLNV--DDRGRGARLS--AGPLLNFAFPDLLT--TNIYTYTG-DA 114
YEC +A N D A L+ G FP + G
Sbjct: 80 YEC---------VAE--NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTV 128
Query: 115 RFS------------------VIHPQN----SDEWNMKIDYAQKRDAGIYECQ 145
+ + N + ++I+ +++ D G YEC
Sbjct: 129 LMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 33.5 bits (77), Expect = 0.015
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ CT MG +P VSW + L N +R + + S ++I QK DA
Sbjct: 120 LPCTTMGNPKPSVSW--IKGDSALREN-------SRIA-VLESGS----LRIHNVQKEDA 165
Query: 60 GIYECQV 66
G Y C
Sbjct: 166 GQYRCVA 172
Score = 33.2 bits (76), Expect = 0.019
Identities = 35/173 (20%), Positives = 52/173 (30%), Gaps = 54/173 (31%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C V +P +SW R + L D R+S+ + + I + D
Sbjct: 27 FMCAVESYPQPEISWTRNKILIK--------LFDTRYSIR----ENGQLLTILSVEDSDD 74
Query: 60 GIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLT---TNIYTYTG-DAR 115
GIY C N N G + + L +T N+ G A
Sbjct: 75 GIYCCTAN-----NGV----------GGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119
Query: 116 FSVI---HPQNSDEW-------------------NMKIDYAQKRDAGIYECQV 146
+P+ S W +++I QK DAG Y C
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVA 172
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 32.7 bits (75), Expect = 0.016
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 3 CTVMGLGRP-VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
V G +WM+ ++ + V + + + + I A++ G
Sbjct: 29 GKVTGTQPITCTWMKFRKQI----------QESEHMKVEN--SENGSKLTILAARQEHCG 76
Query: 61 IYECQV-NTEPKMNMAIMLNVDDR 83
Y V N + L V D+
Sbjct: 77 CYTLLVENKLGSRQAQVNLTVVDK 100
Score = 28.4 bits (64), Expect = 0.57
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163
V + + + + I A++ G Y V N + L V K
Sbjct: 51 SEHMKVEN--SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 33.2 bits (75), Expect = 0.017
Identities = 10/84 (11%), Positives = 22/84 (26%)
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQ 122
+ ++ +P + + + A + V
Sbjct: 39 DVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET 98
Query: 123 NSDEWNMKIDYAQKRDAGIYECQV 146
D ++ A+K D G+Y V
Sbjct: 99 TKDRSIFTVEGAEKEDEGVYTVTV 122
Score = 29.3 bits (65), Expect = 0.30
Identities = 11/83 (13%), Positives = 17/83 (20%), Gaps = 19/83 (22%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHP------------------QN 43
+ G P V W +
Sbjct: 40 VPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT 99
Query: 44 SDEWNMKIDYAQKRDAGIYECQV 66
D ++ A+K D G+Y V
Sbjct: 100 KDRSIFTVEGAEKEDEGVYTVTV 122
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 32.4 bits (74), Expect = 0.019
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 21/94 (22%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ C + + ++W+R D L + R + +++ + D+G
Sbjct: 23 LRCRLRDDVQSINWLR--DGVQLAES-------NRTRI------TGEEVEVQDSVPADSG 67
Query: 61 IYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGP 93
+Y C + +NV D L +GP
Sbjct: 68 LYACVTSSPSGSDTTYFSVNVSD-----ALPSGP 96
Score = 27.0 bits (60), Expect = 1.4
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 130 KIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
++ + D+G+Y C + +NV
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 31.9 bits (73), Expect = 0.022
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
M V GL P VSW + + + D +I + ++ + + DA
Sbjct: 25 MDFKVSGLPAPDVSWYL--NGRTVQS-------DDLHKMIVSEK-GLHSLIFEVVRASDA 74
Query: 60 GIYECQ-VNTEPKMNMAIMLNVDDR 83
G Y C N + + L+V +
Sbjct: 75 GAYACVAKNRAGEATFTVQLDVLAK 99
Score = 29.2 bits (66), Expect = 0.25
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ-VNTEPKMNMAIMLNVDGK 163
D +I + ++ + + DAG Y C N + + L+V K
Sbjct: 47 QSDDLHKMIVSEK-GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 33.1 bits (75), Expect = 0.023
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSD-EWNMKIDYAQKRDAG 60
C + +R L + + + R +++ Q + I Q RD+G
Sbjct: 24 CDFDRRECTELEGIRAS-LQKVENDTSLQSE--RATLLEEQLPLGKALFHIPSVQVRDSG 80
Query: 61 IYECQVNTEPKMNMAIM 77
Y C V + +
Sbjct: 81 QYRCLVICGAAWDYKYL 97
Score = 26.2 bits (57), Expect = 4.9
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 115 RFSVIHPQNSD-EWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
R +++ Q + I Q RD+G Y C V + +
Sbjct: 54 RATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYL 97
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 33.3 bits (76), Expect = 0.024
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 41 PQNSDEWNMKIDYAQKRDAGIYECQVNTEP---KMNMAIMLNVDDRGRGARLSAGPLLNF 97
P+ ++ I R AG Y C + + + L V + LS P
Sbjct: 54 PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEV 113
Query: 98 AFPDLLT--------TNIYTYTGDARFSVIHPQNSDEW-NMKIDYAQKRDAGIYEC 144
+ +T T+++ + R S + + G Y C
Sbjct: 114 ISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 169
Score = 27.6 bits (61), Expect = 1.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 121 PQNSDEWNMKIDYAQKRDAGIYECQ 145
P+ ++ I R AG Y C
Sbjct: 54 PERINKVKFYIPDMNSRMAGQYSCI 78
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.5 bits (73), Expect = 0.025
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 1 MACTVMG---LGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDE----WNMKID 52
+ V G +P + W + + L + + + ARFS NS + I
Sbjct: 32 VVAKVNGKELPDKPTIKWFKGKWLELGSKS------GARFSFKESHNSASNVYTVELHIG 85
Query: 53 YAQKRDAGIYECQVNTEPKMN 73
D G Y +V + +
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCD 106
Score = 29.8 bits (66), Expect = 0.19
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 127 WNMKIDYAQKRDAGIYECQVNTEPKMN 153
+ I D G Y +V + +
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCD 106
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 31.7 bits (72), Expect = 0.027
Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 21/84 (25%)
Query: 1 MACTVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
CT P + W + L + + G + I Q
Sbjct: 30 FICTAKS-KSPAYTLVW-TRLHNGKLPSRAMDFNG---------------ILTIRNVQPS 72
Query: 58 DAGIYECQV-NTEPKMNMAIMLNV 80
DAG Y C N L+V
Sbjct: 73 DAGTYVCTGSNMFAMDQGTATLHV 96
Score = 28.2 bits (63), Expect = 0.54
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
I Q DAG Y C N L+V
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 32.9 bits (74), Expect = 0.031
Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 13/80 (16%)
Query: 3 CTVMGLGRP--VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMK---------- 50
CT G + W D + + + ++ +
Sbjct: 22 CTPTGTHDHYMLEWF-LTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLV 80
Query: 51 IDYAQKRDAGIYECQVNTEP 70
+ AQ D Y C V
Sbjct: 81 LAEAQVGDERDYVCVVRAGA 100
Score = 30.5 bits (68), Expect = 0.21
Identities = 11/59 (18%), Positives = 18/59 (30%)
Query: 92 GPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
G A ++ + + D R Q + + + AQ D Y C V
Sbjct: 42 GARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGA 100
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 32.5 bits (74), Expect = 0.033
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 17/106 (16%)
Query: 51 IDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLT------ 104
ID A D+G Y CQ + + L V G L P F D +
Sbjct: 58 IDAATVDDSGEYRCQTQLSTLSD-PVQLEVH---IGWLLLQAPRWVFKEEDPIHLRCHSW 113
Query: 105 ----TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ TY + + NSD I A +D+G Y C+
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSD---FYIPKATLKDSGSYFCRG 156
Score = 28.3 bits (63), Expect = 0.99
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 131 IDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
ID A D+G Y CQ + + L V
Sbjct: 58 IDAATVDDSGEYRCQTQLSTLSD-PVQLEV 86
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 31.6 bits (72), Expect = 0.039
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+C G P V+W+R +L+T AR V + +I Q D
Sbjct: 34 FSCDTDGEPVPTVTWLR--KGQVLST-------SARHQVT--TTKYKSTFEISSVQASDE 82
Query: 60 GIYECQV-NTEPKMNMAIMLNV 80
G Y V N+E K L +
Sbjct: 83 GNYSVVVENSEGKQEAEFTLTI 104
Score = 25.8 bits (57), Expect = 3.5
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
AR V + +I Q D G Y V N+E K L +
Sbjct: 58 SARHQVT--TTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 31.5 bits (72), Expect = 0.040
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C + G PV W+ K I + Y + ++ + I A +DAG Y
Sbjct: 30 CELSRAGTPVHWL-KDRKAIRKSQKYDVVCEGTMAM----------LVIRGASLKDAGEY 78
Query: 63 ECQVNTE 69
C+V
Sbjct: 79 TCEVEAS 85
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 31.6 bits (72), Expect = 0.044
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C + + P + W R + ++ N R S ++ N+ + I K+DAG
Sbjct: 37 CQISAIPPPKLFWKR--NNEMVQFN------TDRIS-LYQDNTGRVTLLIKDVNKKDAGW 87
Query: 62 YECQ-VNTEPKMNMAIMLNVDDR 83
Y VN L+V R
Sbjct: 88 YTVSAVNEAGVTTCNTRLDVTAR 110
Score = 27.7 bits (62), Expect = 1.1
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ-VNTEPKMNMAIMLNVDGK 163
+ ++ N+ + I K+DAG Y VN L+V +
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 30.8 bits (70), Expect = 0.055
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C V V+W K + + ++ V + + A + +AG Y
Sbjct: 33 CEVAQAQTEVTWY-KDGKKL--------SSSSKVRVE--AVGCTRRLVVQQAGQAEAGEY 81
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRG 86
C+ + ++ L V + G
Sbjct: 82 SCEAGGQ---QLSFRLQVAGQCFG 102
Score = 28.1 bits (63), Expect = 0.57
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 130 KIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDGK 163
+ A + +AG Y C+ + ++ L V G+
Sbjct: 69 VVQQAGQAEAGEYSCEAGGQ---QLSFRLQVAGQ 99
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 31.1 bits (70), Expect = 0.062
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 11 PVSWMRKR------DLHILTTNIY--TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
P+ W ++ TN Y T+ ++R+ + + ++ I+ D G Y
Sbjct: 30 PMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPY 89
Query: 63 ECQVNTEPKMN 73
C V +
Sbjct: 90 CCVVEIPGAFH 100
Score = 29.9 bits (67), Expect = 0.18
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 109 TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 153
T+ ++R+ + + ++ I+ D G Y C V +
Sbjct: 56 THQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFH 100
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 31.2 bits (71), Expect = 0.066
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 20 LHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
+ + DARF +I N +++M I ++ D+GIY C +
Sbjct: 46 QAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 96
Score = 30.4 bits (69), Expect = 0.092
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
DARF +I N +++M I ++ D+GIY C +
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 96
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 31.6 bits (71), Expect = 0.072
Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 44/175 (25%)
Query: 4 TVMGLGRP---VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNM------KIDYA 54
V L +W K + + I + ++ + S +
Sbjct: 20 LVHNLPLALGAFAW-YKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78
Query: 55 QKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGD- 113
+D G+Y + + + R A + P L TN D
Sbjct: 79 TMKDMGVYTLDMT-----------DENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127
Query: 114 ARFSVI--HPQNSDEW--------------------NMKIDYAQKRDAGIYECQV 146
+ + + +W ++ID ++ DAG Y+C++
Sbjct: 128 VTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEI 182
Score = 25.8 bits (56), Expect = 6.5
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 131 IDYAQKRDAGIYECQVNT 148
+D G+Y +
Sbjct: 75 FQMITMKDMGVYTLDMTD 92
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 30.5 bits (69), Expect = 0.080
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ C + + ++W+ + + ++ +N TG+ +++ + D+G
Sbjct: 29 LRCRLRDDVQSINWL-RDGVQLVESNRTRITGE--------------EVEVRDSIPADSG 73
Query: 61 IYECQV-NTEPKMNMAIMLNV 80
+Y C + +NV
Sbjct: 74 LYACVTSSPSGSDTTYFSVNV 94
Score = 28.6 bits (64), Expect = 0.41
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 129 MKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+++ + D+G+Y C + +NV
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 31.5 bits (71), Expect = 0.082
Identities = 28/144 (19%), Positives = 42/144 (29%), Gaps = 23/144 (15%)
Query: 38 VIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDR------------GR 85
V+ + G Y C EP I L+ R G
Sbjct: 40 VLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE 99
Query: 86 GARL---SAG--PLLNFA--FPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KR 137
A L S P+ ++A ++RF V Q E + I+ +
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSE--LHIENLNMEA 157
Query: 138 DAGIYECQV-NTEPKMNMAIMLNV 160
D G Y C +++ I L V
Sbjct: 158 DPGQYRCNGTSSKGSDQAIITLRV 181
Score = 27.7 bits (61), Expect = 1.4
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQ-KRDA 59
+ C + W + + + RF V Q E + I+ + D
Sbjct: 103 LVCKSESVPPVTDWAWYKITDSEDKALMNGSES-RFFVSSSQGRSE--LHIENLNMEADP 159
Query: 60 GIYECQV-NTEPKMNMAIMLNV 80
G Y C +++ I L V
Sbjct: 160 GQYRCNGTSSKGSDQAIITLRV 181
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 30.6 bits (69), Expect = 0.088
Identities = 10/85 (11%), Positives = 20/85 (23%), Gaps = 9/85 (10%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ V G P + W+ + + I + + + +
Sbjct: 25 IEFVVRGNPPPTLHWL-HNGQPLRESKIIHVEYYQEGEISE------GCLLFNKPTHYNN 77
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDR 83
G Y N N I +
Sbjct: 78 GNYTLIAKNPLGTANQTINGHFLKE 102
Score = 25.2 bits (55), Expect = 8.2
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 3/54 (5%)
Query: 113 DARFSVIHPQNSD--EWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163
V + Q + E + + + G Y N N I + +
Sbjct: 49 SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 31.7 bits (72), Expect = 0.092
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C G W+ + +L+ + SV +N ++ Q D G+Y
Sbjct: 268 CDTKQQGMTKVWVSPSNEQVLSQG-----SNGSVSV---RNG---DLFFKKVQVEDGGVY 316
Query: 63 EC 64
C
Sbjct: 317 TC 318
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 30.5 bits (69), Expect = 0.093
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 8/85 (9%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ TV G +P + W + + + +++D +
Sbjct: 21 IPFTVKGNPKPALQWFYN-GAILNESKYICTKIH-----VTNHTEYHGCLQLDNPTHMNN 74
Query: 60 GIYECQV-NTEPKMNMAIMLNVDDR 83
G Y N K I +
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGW 99
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 30.3 bits (69), Expect = 0.094
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
M+ V G +P VSW+R + + + RF+ ++I A++ DA
Sbjct: 25 MSIRVQGEPKPVVSWLR--NRQPVRPD------QRRFAEE--AEGGLCRLRILAAERGDA 74
Query: 60 GIYECQ 65
G Y C+
Sbjct: 75 GFYTCK 80
Score = 27.2 bits (61), Expect = 1.2
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ-VNTEPKMNMAIMLNVDGK 163
D R + ++I A++ DAG Y C+ VN L V G+
Sbjct: 47 RPDQRRFAEEAEG-GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 31.3 bits (71), Expect = 0.095
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 40 HPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM---AIMLNVDDRGRGARLSAGPLLN 96
+ D+ + I ++ AG Y C ++ + L LSA P
Sbjct: 45 SSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA 104
Query: 97 FAFPDLLTTNIYTYTGDARF------SVIHPQNSDEW---NMKIDYAQKRDAGIYECQ 145
+ +T T G +F +N + W + I +G Y C
Sbjct: 105 VSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCY 162
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 31.3 bits (71), Expect = 0.095
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
M C G P ++W + + + R + ++I+ +++ D
Sbjct: 128 MLCAASGNPDPEITWFKDF------LPVDPSASNGRIKQL-----RSGALQIESSEETDQ 176
Query: 60 GIYEC 64
G YEC
Sbjct: 177 GKYEC 181
Score = 28.6 bits (64), Expect = 0.76
Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 48/172 (27%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G +P V+W + + + ++ +++ RD +
Sbjct: 28 CQATGDPKPRVTWNK--KGKKVNS-------QRFETIEFDESAGAVLRIQPLRTPRDENV 78
Query: 62 YECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTT--NIYTYTG-DARFS 117
YEC N+ ++ + L V L FP++ A
Sbjct: 79 YECVAQNSVGEITVHAKLTVLRE---------DQLPSGFPNIDMGPQLKVVERTRTATML 129
Query: 118 ------------------VIHPQNSDEW-------NMKIDYAQKRDAGIYEC 144
+ P S+ ++I+ +++ D G YEC
Sbjct: 130 CAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Score = 26.7 bits (59), Expect = 4.0
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 18/68 (26%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C +G P V WM+ LT G ++ +D+
Sbjct: 227 CVAVGSPMPYVKWMQ--GAEDLTPEDDMPVGRNV---------------LELTDVKDSAN 269
Query: 62 YECQVNTE 69
Y C +
Sbjct: 270 YTCVAMSS 277
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 30.1 bits (68), Expect = 0.12
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ C + + P +W K + + + D R + + A+ +D+G
Sbjct: 30 LTCELSRVDFPATWY-KDGQKVEESELLVVKMDGRKHR----------LILPEAKVQDSG 78
Query: 61 IYECQVNTE 69
+EC+
Sbjct: 79 EFECRTEGV 87
Score = 26.6 bits (59), Expect = 1.8
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 131 IDYAQKRDAGIYECQVNTE 149
+ A+ +D+G +EC+
Sbjct: 69 LPEAKVQDSGEFECRTEGV 87
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 30.0 bits (68), Expect = 0.12
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V+G P V W K + R S + E + + A DAG+
Sbjct: 35 CVVLGEPPPVVVWE-KGGQQL--------AASERLSFPA--DGAEHGLLLTAALPTDAGV 83
Query: 62 YEC 64
Y C
Sbjct: 84 YVC 86
Score = 25.8 bits (57), Expect = 4.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144
R S + E + + A DAG+Y C
Sbjct: 57 SERLSFPA--DGAEHGLLLTAALPTDAGVYVC 86
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 30.0 bits (68), Expect = 0.13
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ +G P +W V ++ + A++ D+
Sbjct: 22 LEVDFIGAPDPTATWTV--GDSGAAL-------APELLVDAKSSTTS--IFFPSAKRADS 70
Query: 60 GIYECQV 66
G Y+ +V
Sbjct: 71 GNYKLKV 77
Score = 26.1 bits (58), Expect = 2.5
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
V ++ + A++ D+G Y+ +V
Sbjct: 46 APELLVDAKSSTTS--IFFPSAKRADSGNYKLKV 77
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 30.6 bits (69), Expect = 0.13
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 29/112 (25%)
Query: 51 IDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTN---- 106
ID A D+G Y CQ N + + L V G LL A +
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSD-PVQLEV---------HIGWLLLQAPRWVFKEEDPIH 107
Query: 107 ------------IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
TY + + NS + I A +D+G Y C+
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDRKYFHHNS---DFHIPKATLKDSGSYFCRG 156
Score = 27.1 bits (60), Expect = 1.9
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 131 IDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
ID A D+G Y CQ N + + L V
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSD-PVQLEV 86
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 30.8 bits (70), Expect = 0.14
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR-DAG 60
+G P ++W +L + ++ ++ + Q++ AG
Sbjct: 125 VMYIGRPVPAMTW--FHGQKLLQNS-------ENITIE--NTEHYTHLVMKNVQRKTHAG 173
Query: 61 IYECQV-NTEPKMNMAIMLNVDDR 83
Y+ Q+ N ++ + + + D+
Sbjct: 174 KYKVQLSNVFGTVDAILDVEIQDK 197
Score = 29.7 bits (67), Expect = 0.32
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 55/177 (31%)
Query: 1 MACTVMGLGRP-VSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
++C ++G P + W R ++L ++ + + + + ++ D
Sbjct: 27 LSCQIVGRPLPDIKWYRFGKELI----------QSRKYKMSS--DGRTHTLTVMTEEQED 74
Query: 59 AGIYEC---------------QVNTEPKMNMAIMLNVD---DRGRGARLSAGPLLNFAFP 100
G+Y C + P+ + L G RL P
Sbjct: 75 EGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY---IGRP 131
Query: 101 ----------DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR-DAGIYECQV 146
LL + ++ ++ + Q++ AG Y+ Q+
Sbjct: 132 VPAMTWFHGQKLLQNS-------ENITIE--NTEHYTHLVMKNVQRKTHAGKYKVQL 179
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 30.6 bits (69), Expect = 0.16
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNM-KIDYAQKRD 58
+ C V +SW + + ++N + + N+ + ++ + D
Sbjct: 38 ITCEVFAYPSATISWF-RDGQLLPSSN------YSNIKI---YNTPSASYLEVTPDSEND 87
Query: 59 AGIYECQVNTE 69
G Y C
Sbjct: 88 FGNYNCTAVNR 98
Score = 27.5 bits (61), Expect = 2.1
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 130 KIDYAQKRDAGIYECQVNTE 149
++ + D G Y C
Sbjct: 79 EVTPDSENDFGNYNCTAVNR 98
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.8 bits (69), Expect = 0.16
Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 9/77 (11%)
Query: 27 IYTYTGDA---RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDR 83
Y G R + I AQ D+G Y C N I
Sbjct: 47 FYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIF------ 100
Query: 84 GRGARLSAGPLLNFAFP 100
G G LS P + P
Sbjct: 101 GTGTLLSVKPNIQNPEP 117
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 30.6 bits (69), Expect = 0.17
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 12 VSWMRKRDLHILTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68
+ W + D + T+ + + +KI + + D IY+ +
Sbjct: 33 IKWEKTSDKKKIAQFRKEKETFKEKDTYKL-----FKNGTLKIKHLKTDDQDIYKVSIYD 87
Query: 69 EP---KMNMAIMLNVDDR 83
+ L + +R
Sbjct: 88 TKGKNVLEKIFDLKIQER 105
Score = 26.8 bits (59), Expect = 2.8
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 130 KIDYAQKRDAGIYECQVNTE 149
KI + + D IY+ +
Sbjct: 69 KIKHLKTDDQDIYKVSIYDT 88
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 29.2 bits (66), Expect = 0.20
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
G RP W + D +T ++ + ++ + ++I D+G+
Sbjct: 28 VKATGEPRPTAIWTK--DGKAITQ-------GGKYKLS--EDKGGFFLEIHKTDTSDSGL 76
Query: 62 YEC 64
Y C
Sbjct: 77 YTC 79
Score = 25.3 bits (56), Expect = 5.0
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144
++ + ++ + ++I D+G+Y C
Sbjct: 50 GGKYKLS--EDKGGFFLEIHKTDTSDSGLYTC 79
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 29.7 bits (67), Expect = 0.21
Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 11/65 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C + V W D L + I Q + + +D+G
Sbjct: 35 CRISPANYEPVHWFL--DKTPLHA-------NELNE-IDAQPGGYHVLTLRQLALKDSGT 84
Query: 62 YECQV 66
+
Sbjct: 85 IYFEA 89
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 29.8 bits (67), Expect = 0.22
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 11/65 (16%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C V G P V W K D + + + I ++ I D
Sbjct: 61 FDCKVEGYPDPEVMWF-KDDNPVKESRHFQ---------IDYDEEGNCSLTISEVCGDDD 110
Query: 60 GIYEC 64
Y C
Sbjct: 111 AKYTC 115
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 29.5 bits (66), Expect = 0.23
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 12 VSWMRKRDLHILTTNIY-TYTGDARFSVIHPQ-------NSDEWN-----MKIDYAQKRD 58
+ W+ + + Y+GD + +P S++ + + Q D
Sbjct: 41 IEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSD 100
Query: 59 AGIYECQVNTEPKMNMAIM-LNV 80
G Y+C+V P + + L V
Sbjct: 101 IGTYQCKVKKAPGVANKKIHLVV 123
Score = 29.5 bits (66), Expect = 0.26
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 130 KIDYAQKRDAGIYECQVNTEPKMNMAIM-LNV 160
+ Q D G Y+C+V P + + L V
Sbjct: 92 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 29.9 bits (67), Expect = 0.23
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 51 IDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLL----------NFAFP 100
I A+ D+G Y+CQ + + L V + SA ++ +
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNESE-PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 113
Query: 101 DLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
D+ Y D +N N+ I A D+G Y C
Sbjct: 114 DVYK---VIYYKDGEALKYWYENH---NISITNATVEDSGTYYCTG 153
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 29.5 bits (66), Expect = 0.23
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 12 VSWMRKRDLHILTTNIYTYTG-DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
++W D I+ + +++F + + I QK D Y +V +
Sbjct: 37 LTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKT 96
Query: 71 --KMNMAIMLNVDDR 83
+ I L V D
Sbjct: 97 GNEQEWKIKLQVLDP 111
Score = 27.2 bits (60), Expect = 1.7
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 128 NMKIDYAQKRDAGIYECQVNTEP--KMNMAIMLNV 160
+ I QK D Y +V + + I L V
Sbjct: 74 ALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.1 bits (65), Expect = 0.28
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 6 MGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65
R + L I + + R ++ + + + + I + D+G Y+C
Sbjct: 35 KYWCRQGARGGCITL-ISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
Query: 66 VNTEPKMNMA-IMLNVDDRGRG 86
+ + + L V +
Sbjct: 94 LGINSRGLSFDVSLEVLEHHHH 115
Score = 27.5 bits (61), Expect = 1.0
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 104 TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMA-IMLNVD 161
+ + R ++ + + + + I + D+G Y+C + + + L V
Sbjct: 52 SEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 29.1 bits (65), Expect = 0.28
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDA--------RFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63
V W+ + +T + TGD R V H D +++I+ Q D Y
Sbjct: 36 VKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD-VSLQINTLQMDDRNHYT 94
Query: 64 CQVNTEP 70
C+V +
Sbjct: 95 CEVTWQT 101
Score = 26.1 bits (57), Expect = 4.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
R V H D +++I+ Q D Y C+V +
Sbjct: 67 RLKVSHKVPGD-VSLQINTLQMDDRNHYTCEVTWQT 101
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 29.2 bits (65), Expect = 0.30
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 22/80 (27%)
Query: 12 VSWMRKRDLHILTTNIYTY------------TGDARFSVIHPQNSDEWNMK--------- 50
V+W + D N+ + G R S + + S + +
Sbjct: 38 VTWQ-RPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLA 96
Query: 51 IDYAQKRDAGIYECQVNTEP 70
+ D G Y C+ T P
Sbjct: 97 LHGLTVEDEGNYTCEFATFP 116
Score = 28.8 bits (64), Expect = 0.41
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 138 DAGIYECQVNTEP 150
D G Y C+ T P
Sbjct: 104 DEGNYTCEFATFP 116
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 28.9 bits (65), Expect = 0.31
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 11/65 (16%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C V W + + + R ++ H + ID + D G Y
Sbjct: 30 CEVSDEKVTGKWYK--NGVEVRP-------SKRITISH--VGRFHKLVIDDVRPEDEGDY 78
Query: 63 ECQVN 67
+
Sbjct: 79 TFVPD 83
Score = 25.4 bits (56), Expect = 4.8
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
R ++ H + ID + D G Y +
Sbjct: 51 SKRITISH--VGRFHKLVIDDVRPEDEGDYTFVPD 83
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.1 bits (65), Expect = 0.31
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 22 ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 80
+ T+ R S+ Q + + + ++ K DA Y C + T + + + + +
Sbjct: 50 VKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
Query: 81 D 81
D
Sbjct: 110 D 110
Score = 28.4 bits (63), Expect = 0.71
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 104 TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161
T+ R S+ Q + + + ++ K DA Y C + T + + + + +D
Sbjct: 52 TSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 28.9 bits (65), Expect = 0.32
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 10/65 (15%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C V G +P + W K I + I ++ + D
Sbjct: 28 FTCRVAGNPKPKIYWF-KDGKQISP--------KSDHYTIQRDLDGTCSLHTTASTLDDD 78
Query: 60 GIYEC 64
G Y
Sbjct: 79 GNYTI 83
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 29.0 bits (65), Expect = 0.32
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKI--DYAQKR 57
+ C G P + W + + T D R + + + ++I +
Sbjct: 29 LNCKAEGRPTPTIEWYKG------GERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 58 DAGIYECQ 65
D G+Y C
Sbjct: 83 DEGVYVCV 90
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 29.1 bits (65), Expect = 0.35
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ +V G P + W+ + +L + +T + ++++ +
Sbjct: 20 IPFSVDGQPAPSLRWLF--NGSVLNETSFIFTEFLEPAANE--TVRHGCLRLNQPTHVNN 75
Query: 60 GIYECQV 66
G Y
Sbjct: 76 GNYTLLA 82
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 29.5 bits (66), Expect = 0.36
Identities = 32/186 (17%), Positives = 51/186 (27%), Gaps = 40/186 (21%)
Query: 1 MACTV-MGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C +S+ + + T D R V N+ I + D
Sbjct: 28 LLCDPPYHFPDDLSYRWLLNEFPVFI-----TMDKRRFVSQTNG----NLYIANVEASDK 78
Query: 60 GIYECQVNTE--PKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTG-DARF 116
G Y C V++ K + + + + F D +Y G +
Sbjct: 79 GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD-----VYALMGQNVTL 133
Query: 117 SVI---HPQNSDEW------------------NMKIDYAQKRDAGIYECQV-NTEPKMNM 154
+P W +KI Q D GIYEC+ N K
Sbjct: 134 ECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKH 193
Query: 155 AIMLNV 160
+ V
Sbjct: 194 QARIYV 199
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 28.9 bits (65), Expect = 0.37
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C + + PV W + L R S+ Q+ ++I DAG Y
Sbjct: 41 CELSKMA-PVEWWK--GHETLRD-------GDRHSLR--QDGARCELQIRGLVAEDAGEY 88
Query: 63 ECQVNTE 69
C E
Sbjct: 89 LCMCGKE 95
Score = 26.2 bits (58), Expect = 2.8
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
R S+ Q+ ++I DAG Y C E
Sbjct: 61 GDRHSLR--QDGARCELQIRGLVAEDAGEYLCMCGKE 95
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.7 bits (64), Expect = 0.39
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWN-------MKIDYAQKRDAGIYEC 64
++W K + +V H + + + I + DAG Y+
Sbjct: 32 IAWTSKTS--VAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKA 89
Query: 65 QVNTE 69
+NT+
Sbjct: 90 DINTQ 94
Score = 25.3 bits (55), Expect = 5.7
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 102 LLTTNIYTYTGDARFSVIHPQNSDEWN-------MKIDYAQKRDAGIYECQVNTE 149
+ +V H + + + I + DAG Y+ +NT+
Sbjct: 40 VAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQ 94
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 28.5 bits (64), Expect = 0.43
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 23/64 (35%)
Query: 3 CTVMGLGRP-VSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C V P + WM+ L + + + + +D G
Sbjct: 32 CEVPAQPSPQIHWMKDGVPLPLPPSPVLI---------------------LPEIGPQDQG 70
Query: 61 IYEC 64
Y C
Sbjct: 71 TYSC 74
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 28.4 bits (64), Expect = 0.44
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 15/65 (23%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C+V G P ++W+ + + T + I A D
Sbjct: 31 LQCSVRGTPVPRITWLL--NGQPIQYARSTCEAGVA------------ELHIQDALPEDH 76
Query: 60 GIYEC 64
G Y C
Sbjct: 77 GTYTC 81
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.8 bits (64), Expect = 0.44
Identities = 7/45 (15%), Positives = 23/45 (51%)
Query: 22 ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66
+ ++ T +RF++ ++ + + + ++ D+G Y C++
Sbjct: 59 VTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRI 103
Score = 27.6 bits (61), Expect = 1.1
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 104 TTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
++ T +RF++ ++ + + + ++ D+G Y C++
Sbjct: 61 SSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRI 103
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 28.5 bits (64), Expect = 0.46
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 11/67 (16%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
G V W R ++ ++ + + + D G Y
Sbjct: 30 AETERAGVKVRWQR--GGSDISA-------SNKYGLA--TEGTRHTLTVREVGPADQGSY 78
Query: 63 ECQVNTE 69
+
Sbjct: 79 AVIAGSS 85
Score = 25.8 bits (57), Expect = 3.9
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 131 IDYAQKRDAGIYECQVNTE 149
+ D G Y +
Sbjct: 67 VREVGPADQGSYAVIAGSS 85
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 28.5 bits (63), Expect = 0.50
Identities = 7/73 (9%), Positives = 19/73 (26%), Gaps = 8/73 (10%)
Query: 1 MACTVMGLGRP---VSWM-RKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQK 56
C+ +W L Y + ++ +++ +
Sbjct: 30 FTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI----LRLRNVEF 85
Query: 57 RDAGIYECQVNTE 69
G Y+C ++
Sbjct: 86 TSEGXYQCVISNH 98
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 28.1 bits (63), Expect = 0.53
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 3 CTVMGLGRPVSWMRK-RDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C V V W + ++ + Y + + + + I+ A K DA
Sbjct: 29 CEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI----------LIIEGATKADAAE 78
Query: 62 YECQVNTE 69
Y
Sbjct: 79 YSVMTTGG 86
Score = 25.4 bits (56), Expect = 6.2
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 130 KIDYAQKRDAGIYECQVNTE 149
I+ A K DA Y
Sbjct: 67 IIEGATKADAAEYSVMTTGG 86
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 28.1 bits (63), Expect = 0.53
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 15/69 (21%)
Query: 1 MACTVMGLGRP--VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
C + + V+W R L ++ + + + K
Sbjct: 21 YVCKIENYDQSTQVTWYFGVRQL----------ENSEKYEIT--YEDGVAILYVKDITKL 68
Query: 58 DAGIYECQV 66
D G Y C+V
Sbjct: 69 DDGTYRCKV 77
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 29.4 bits (65), Expect = 0.56
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 8/119 (6%)
Query: 39 IHPQNSDEWNMKIDYAQKRDAGIYEC---QVNTEPKMNMAIMLNVDD----RGRGARLSA 91
I + + + + G +V P L + + G+ A
Sbjct: 127 ISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQC 186
Query: 92 GPLLNFAFPDLLTTNIY-TYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
+ D L + + + + KRDAG Y C + TE
Sbjct: 187 SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245
Score = 28.2 bits (62), Expect = 1.2
Identities = 10/62 (16%), Positives = 16/62 (25%)
Query: 8 LGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67
+ I + + + + KRDAG Y C +
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 68 TE 69
TE
Sbjct: 244 TE 245
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 29.0 bits (64), Expect = 0.58
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 SWMRKRDLHILTTNIYTYTGDA--RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQ 65
+W +R+ + T I + G+A FS+ + + ++ + A D + C
Sbjct: 227 NWYLQREGQLSPTLIGSEVGEALEGFSI-----TPDGHLFKESATYDDTAKFWCV 276
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 28.0 bits (63), Expect = 0.66
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 14/67 (20%)
Query: 1 MACTVMGLGRP-VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
V V W +L ++ + S ++I D
Sbjct: 28 FILNVQSKPTAEVKWYHNGVELQ----------ESSKIHYTN--TSGVLTLEILDCHTDD 75
Query: 59 AGIYECQ 65
+G Y
Sbjct: 76 SGTYRAV 82
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 28.8 bits (64), Expect = 0.69
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 11/72 (15%)
Query: 27 IYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVD 81
I + R V + ++ I ++ D Y C +T I
Sbjct: 47 ILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIF---- 102
Query: 82 DRGRGARLSAGP 93
G G RL
Sbjct: 103 --GTGTRLKVLA 112
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 100 PDLLTTNIYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM 154
L I + R V + ++ I ++ D Y C +T
Sbjct: 43 LVHL---ILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYK 99
Query: 155 AIM 157
I
Sbjct: 100 YIF 102
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 28.9 bits (64), Expect = 0.74
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 12 VSWMRK-----RDLHILTTNIYTYTGDARFSVIHPQNSDEWNM--KIDYAQKRDAGIYEC 64
++W K +++ + +++ P + ++ Q +AG Y C
Sbjct: 40 ITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRC 99
Query: 65 QVNTEP 70
+V P
Sbjct: 100 EVVVTP 105
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 28.7 bits (64), Expect = 0.81
Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C ++ K + G+ + + + D G+
Sbjct: 234 CMYGSNPMGYPNY-FKNGKDV--------NGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 284
Query: 62 YECQVN 67
Y C+V+
Sbjct: 285 YTCEVD 290
Score = 28.7 bits (64), Expect = 0.84
Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 32/175 (18%)
Query: 1 MACTVM-GLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
+ C + +P ++W + L N D R + + + + + D
Sbjct: 120 LDCVLPNAYPKPLITWKK--RLSGADPNADVTDFDRRITAGP--DGNLYFTIVTKEDVSD 175
Query: 59 AGIYECQVN---TEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTT---------- 105
Y C + ++ + + P+ + D++
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235
Query: 106 -------------NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
N G+ + + + D G+Y C+V+
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Score = 28.0 bits (62), Expect = 1.4
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 17/66 (25%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
+ C V GL P V W + L+ T T + I + D
Sbjct: 329 IPCKVTGLPAPNVVWSH--NAKPLSGGRATVTDS--------------GLVIKGVKNGDK 372
Query: 60 GIYECQ 65
G Y C+
Sbjct: 373 GYYGCR 378
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 28.4 bits (63), Expect = 0.81
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69
V W R L + I +KI + D+G Y V +
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGD----LKIKNLTRDDSGTYNVTVYST 83
Score = 25.7 bits (56), Expect = 6.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 130 KIDYAQKRDAGIYECQVNTE 149
KI + D+G Y V +
Sbjct: 64 KIKNLTRDDSGTYNVTVYST 83
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 28.6 bits (64), Expect = 0.81
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 1 MACTV-MGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
M C G P +SW K+D L T + I Y +K D
Sbjct: 131 MECQPPRGHPEPTISW--KKDGSPLDDKDERIT----------IRGG--KLMITYTRKSD 176
Query: 59 AGIYEC 64
AG Y C
Sbjct: 177 AGKYVC 182
Score = 27.1 bits (60), Expect = 2.4
Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 36/167 (21%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEW--NMKIDYAQKR 57
+ C G P + W + + + T D R + + + + +
Sbjct: 29 LNCKAEGRPTPTIEWYKGGER------VETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRP 82
Query: 58 DAGIYEC----------------QVNTEPKMNMAIMLNVD-DRGRGARLSAGPLLNFAFP 100
D G+Y C +V +V G A + P P
Sbjct: 83 DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPP--RGHP 140
Query: 101 DLLTT---NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYEC 144
+ + + I + I Y +K DAG Y C
Sbjct: 141 EPTISWKKDGSPLDDKDERITI-----RGGKLMITYTRKSDAGKYVC 182
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 28.4 bits (63), Expect = 0.84
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 11 PVSWMRKRDLHILTTNIYT-------YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63
+++ ++ T + Y F + ++ ++ I + D G YE
Sbjct: 27 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-----TNNLSIVILALRPSDEGTYE 81
Query: 64 CQVNTEPK 71
C V K
Sbjct: 82 CVVLKYEK 89
Score = 28.4 bits (63), Expect = 0.99
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 110 YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 151
Y F + ++ ++ I + D G YEC V K
Sbjct: 53 YKNRTIFDI-----TNNLSIVILALRPSDEGTYECVVLKYEK 89
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 27.8 bits (62), Expect = 0.88
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
DARF +I N +++M I ++ D+GIY C +
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 106
Score = 27.8 bits (62), Expect = 0.88
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
DARF +I N +++M I ++ D+GIY C +
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH 106
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.0 bits (62), Expect = 0.93
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 55 QKRDAGIYECQVNTEPKMNMAIM-LNVDD 82
+ D G Y C A + L V+D
Sbjct: 93 RFSDEGGYTCFFRDHSYQEEAAVELKVED 121
Score = 26.8 bits (59), Expect = 2.2
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 135 QKRDAGIYECQVNTEPKMNMAIM-LNV 160
+ D G Y C A + L V
Sbjct: 93 RFSDEGGYTCFFRDHSYQEEAAVELKV 119
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.3 bits (63), Expect = 1.0
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 39 IHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
I + + I G Y C ++
Sbjct: 50 IPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81
Score = 28.3 bits (63), Expect = 1.0
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 119 IHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
I + + I G Y C ++
Sbjct: 50 IPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 27.5 bits (61), Expect = 1.0
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 35 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69
R ++ + N+ + + D+G Y +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
Score = 27.5 bits (61), Expect = 1.0
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
R ++ + N+ + + D+G Y +
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS 101
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 28.0 bits (62), Expect = 1.0
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 24/145 (16%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 71
V W +++D + + + F ++ ++ I D YE +
Sbjct: 26 VLWKKQKDK-VAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI-T 83
Query: 72 MNMAIMLNVDDRGRGARLSAGPLLNFAFPDL-LT--------TNIYTYTGDARFSVIHPQ 122
M L V + +S P++ + + LT + Y G +
Sbjct: 84 DTMKFFLYVLE-----MVSK-PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-- 135
Query: 123 NSDEWNMKIDYAQKRDAGIYECQVN 147
+ Y ++C+
Sbjct: 136 -----QKTMSYQWTNLRAPFKCKAV 155
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 28.5 bits (63), Expect = 1.0
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 26/82 (31%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
C G P + ++ + T +
Sbjct: 205 PMCQAWGNPLPELKCLKDGTFPLPIGESVT------------------------VTRDLE 240
Query: 60 GIYECQ-VNTEPKMNMAIMLNV 80
G Y C+ +T+ ++ + +NV
Sbjct: 241 GTYLCRARSTQGEVTREVTVNV 262
Score = 28.1 bits (62), Expect = 1.4
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 134 AQKRDAGIYECQ-VNTEPKMNMAIMLNV 160
+ G Y C+ +T+ ++ + +NV
Sbjct: 235 VTRDLEGTYLCRARSTQGEVTREVTVNV 262
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 27.3 bits (61), Expect = 1.1
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 23/67 (34%)
Query: 3 CTVMGLGRP-VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C +G P W + + L T +Y + Y G
Sbjct: 25 CVAVGSPIPHYQWFKNELPLTHETKKLYM---------------------VPYVDLEHQG 63
Query: 61 IYECQVN 67
Y C V
Sbjct: 64 TYWCHVY 70
Score = 25.8 bits (57), Expect = 3.6
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 131 IDYAQKRDAGIYECQVN 147
+ Y G Y C V
Sbjct: 54 VPYVDLEHQGTYWCHVY 70
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 27.2 bits (61), Expect = 1.1
Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 13/67 (19%)
Query: 1 MACTVMGLGRP-VSWMR-KRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD 58
V+G P W + + R P++ + + I D
Sbjct: 25 FRVRVVGKPDPECEWYKNGVKI----------ERSDRIYWYWPED-NVCELVIRDVTGED 73
Query: 59 AGIYECQ 65
+ +
Sbjct: 74 SASIMVK 80
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 27.9 bits (62), Expect = 1.1
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 12/116 (10%)
Query: 41 PQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNM---AIMLNVDDRGRGARLSAGPLLNF 97
P+ ++ I R AG Y C + + L V + LS P
Sbjct: 51 PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEV 110
Query: 98 AFPDLLTTNIYTYTGDARFS------VIHPQNSDEWNMK---IDYAQKRDAGIYEC 144
+ +T T + F H Q + G Y C
Sbjct: 111 ISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 166
Score = 26.3 bits (58), Expect = 4.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 121 PQNSDEWNMKIDYAQKRDAGIYECQ 145
P+ ++ I R AG Y C
Sbjct: 51 PERINKVKFYIPDMNSRMAGQYSCI 75
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 27.6 bits (61), Expect = 1.2
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 11 PVSWMRKRDLHILTTNIYTYTGDAR---FSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67
V+W R + T R + + + + I + DA IY C+V
Sbjct: 42 SVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE 101
Query: 68 T 68
Sbjct: 102 V 102
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 27.9 bits (62), Expect = 1.2
Identities = 15/112 (13%), Positives = 26/112 (23%), Gaps = 29/112 (25%)
Query: 51 IDYAQKRDAGIYECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFP------DLLT 104
A D+G Y CQ + + L V L+ + +
Sbjct: 55 RFKANNNDSGEYTCQTGQTSL-SDPVHLTV---------LFEWLVLQTPHLEFQEGETIM 104
Query: 105 ----------TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
T+ + + + I A +G Y C
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKFSHLDP---TFSIPQANHSHSGDYHCTG 153
Score = 26.7 bits (59), Expect = 3.3
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 131 IDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
A D+G Y CQ + + L V
Sbjct: 55 RFKANNNDSGEYTCQTGQTSL-SDPVHLTV 83
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 27.5 bits (60), Expect = 1.2
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 119 IHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMA------IMLNVDGK 163
N +++ + +D G Y CQV ++L V G
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 134
Score = 26.4 bits (57), Expect = 3.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 39 IHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69
N +++ + +D G Y CQV
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 28.3 bits (62), Expect = 1.3
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 45 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLL 103
N+ I + D+G Y+C V + ++ I+++ R L+ P + F +L
Sbjct: 180 SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS-----RCKILTVIPSQDHRFKLIL 234
Query: 104 TTNIYTYTGD 113
I G+
Sbjct: 235 DPKINVTIGE 244
Score = 26.3 bits (57), Expect = 4.8
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 125 DEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
N+ I + D+G Y+C V + ++ I+++
Sbjct: 180 SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 26.9 bits (60), Expect = 1.4
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 1 MACTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDA 59
++CT G P + W K + ++ + N+ I +K D
Sbjct: 30 VSCTASGNPPPQIMWF-KDNETLVEDSGIVLK------------DGNRNLTIRRVRKEDE 76
Query: 60 GIYECQ 65
G+Y CQ
Sbjct: 77 GLYTCQ 82
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 27.8 bits (62), Expect = 1.8
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 131 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDG 162
+ D G+Y C V N N + LNV
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 27.4 bits (61), Expect = 2.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 51 IDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 81
+ D G+Y C V N N + LNV
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 26.6 bits (59), Expect = 1.8
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P + W++ + + R +N W++ ++ D G
Sbjct: 30 CPAGGNPMPTMRWLK--NGKEFKQ-------EHRIGGYKVRN-QHWSLIMESVVPSDKGN 79
Query: 62 YECQV 66
Y C V
Sbjct: 80 YTCVV 84
Score = 25.5 bits (56), Expect = 4.2
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 111 TGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
+ R +N W++ ++ D G Y C V
Sbjct: 50 KQEHRIGGYKVRN-QHWSLIMESVVPSDKGNYTCVV 84
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 26.7 bits (59), Expect = 1.8
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 22 ILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68
I+ T + R S+ + + + ++ + DAG Y C V+T
Sbjct: 43 IVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDT 89
Score = 26.4 bits (58), Expect = 2.5
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 148
++ T + R S+ + + + ++ + DAG Y C V+T
Sbjct: 43 IVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDT 89
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex,
intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A
{Escherichia coli} SCOP: c.52.1.15
Length = 155
Score = 27.3 bits (60), Expect = 2.1
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 23/114 (20%)
Query: 67 NTEPKMNMAIMLNVDDRGRGARLSAGPLLN---FAFPD---LLTTNIYTYTGDARFSVIH 120
+T + +A +L +G R+ L F + ++ T+ + +
Sbjct: 20 DTAIEKRLASLL--TGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKV 77
Query: 121 PQ-NSDEWNMKIDYAQKRDAG--------------IYECQVNTEPKMNMAIMLN 159
P ++ W KI +RD ++EC + K+ +
Sbjct: 78 PATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTE 131
Score = 25.7 bits (56), Expect = 6.8
Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 14/80 (17%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG------------- 60
+ + I T + + + ++ W KI +RD
Sbjct: 52 VVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVL 111
Query: 61 -IYECQVNTEPKMNMAIMLN 79
++EC + K+ +
Sbjct: 112 IVWECALRGREKLTDEALTE 131
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 8/53 (15%)
Query: 100 PDLLTTNIYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
P+ L R S + I +Q D+ Y C N
Sbjct: 43 PEAL---FVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARN 92
Score = 26.8 bits (59), Expect = 2.7
Identities = 13/72 (18%), Positives = 18/72 (25%), Gaps = 14/72 (19%)
Query: 27 IYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNVD 81
R S + I +Q D+ Y C NT +
Sbjct: 47 FVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYF------- 99
Query: 82 DRGRGARLSAGP 93
G G L+ P
Sbjct: 100 --GTGTSLTVIP 109
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition,
hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB:
1odg_A*
Length = 136
Score = 26.8 bits (59), Expect = 2.4
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 14/85 (16%)
Query: 9 GRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRD---------A 59
GRP + + I T + + + ++ W KI +RD
Sbjct: 28 GRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQEL 87
Query: 60 G-----IYECQVNTEPKMNMAIMLN 79
G ++EC + K+ +
Sbjct: 88 GWRVLIVWECALRGREKLTDEALTE 112
Score = 25.3 bits (55), Expect = 8.1
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 23/114 (20%)
Query: 67 NTEPKMNMAIMLNVDDRGRGARLSAGPLLN---FAFPD----LLTTNIYTYTGDARFSVI 119
+T + +A +L +G R+ L F + + T + + +
Sbjct: 1 DTAIEKRLASLL--TGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKV 58
Query: 120 HPQNSDEWNMKIDYAQKRD---------AG-----IYECQVNTEPKMNMAIMLN 159
++ W KI +RD G ++EC + K+ +
Sbjct: 59 PATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTE 112
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 26.6 bits (59), Expect = 2.4
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 11 PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTE 69
PV W + L R+S+ Q+ ++I DAG Y C E
Sbjct: 37 PVEWKK--GPETLRD-------GGRYSLK--QDGTRCELQIHDLSVADAGEYSCMCGQE 84
Score = 25.4 bits (56), Expect = 5.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 129 MKIDYAQKRDAGIYECQVNTE 149
++I DAG Y C E
Sbjct: 64 LQIHDLSVADAGEYSCMCGQE 84
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 26.1 bits (58), Expect = 2.4
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
MA V G V WM K + + + + AR+ ++ + + D G
Sbjct: 28 MAVEVSEEGAQVMWM-KNGVELTREDSF----KARYRFK--KDGKRHILIFSDVVQEDRG 80
Query: 61 IYECQVN 67
Y+ N
Sbjct: 81 RYQVITN 87
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.8 bits (58), Expect = 2.7
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 52 DYAQKRDAGIYECQVNTEPKMN----MAIMLNVDDRGRGARLSAGPLLNFAFPD------ 101
D+++ D+G Y C K A + + DD + A + A D
Sbjct: 50 DFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNK 109
Query: 102 ---LLTTNIYTYTGDARFSVIHPQNSDEW---------------NMKIDYAQKRDAGIYE 143
L+ + G + + +W + K G Y+
Sbjct: 110 AKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQ 169
Query: 144 CQVNTE 149
CQ E
Sbjct: 170 CQGAKE 175
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 26.6 bits (58), Expect = 3.5
Identities = 8/70 (11%), Positives = 15/70 (21%), Gaps = 17/70 (24%)
Query: 12 VSWMRKRDLHILTTNIYTYT-GDARFSVIHPQNSD------------EWNMKIDYAQKRD 58
+ W+ + Y G + ++I D
Sbjct: 39 LKWVSSSL----RQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASD 94
Query: 59 AGIYECQVNT 68
+G Y C
Sbjct: 95 SGKYLCYFQD 104
Score = 26.2 bits (57), Expect = 4.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 127 WNMKIDYAQKRDAGIYECQVNT 148
++I D+G Y C
Sbjct: 83 AALRIHNVTASDSGKYLCYFQD 104
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed
death-1, costimulatory, immune system; 2.10A {Homo
sapiens}
Length = 129
Score = 26.1 bits (58), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66
D RF V N +++M + A++ D+G Y C
Sbjct: 61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGA 94
Score = 26.1 bits (58), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
D RF V N +++M + A++ D+G Y C
Sbjct: 61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGA 94
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 26.6 bits (58), Expect = 3.7
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 8/59 (13%)
Query: 100 PDLLTTNIYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 153
LL + R+S +++ + I D Y C V
Sbjct: 44 LVLL---TVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSAL 99
Score = 26.6 bits (58), Expect = 4.0
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 73
+ R+S +++ + I D Y C V
Sbjct: 59 NGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSAL 99
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 26.5 bits (58), Expect = 3.7
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 100 PDLLTTNIYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 148
P LL + TG R + + ++ I AQ D G+Y C
Sbjct: 43 PVLL---VTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG 93
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 26.1 bits (57), Expect = 4.9
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 100 PDLLTTNIYTYTG-----DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKM 152
P LL + T F + + + ++++ Q+ D+ +Y C N+
Sbjct: 43 PQLL---LQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQ 97
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 25.3 bits (56), Expect = 5.7
Identities = 3/19 (15%), Positives = 4/19 (21%)
Query: 51 IDYAQKRDAGIYECQVNTE 69
+ Q G Q
Sbjct: 64 LHNCQLGMTGEVSFQAANT 82
Score = 25.3 bits (56), Expect = 5.7
Identities = 3/19 (15%), Positives = 4/19 (21%)
Query: 131 IDYAQKRDAGIYECQVNTE 149
+ Q G Q
Sbjct: 64 LHNCQLGMTGEVSFQAANT 82
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 25.7 bits (56), Expect = 5.8
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 12 VSWMRKRDLHILTTNIYTYTGD--------ARFSVIHPQNSDEWNMKIDYAQKRDAGIYE 63
W R + + T RF ++ + + I A+ DAG Y
Sbjct: 45 GYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYF 104
Query: 64 CQVNTEP 70
++
Sbjct: 105 FRMEKGN 111
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 24.8 bits (54), Expect = 8.2
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV--NTEPK 71
++ + ++++ + R + + +++ Q+ DAG Y C V P+
Sbjct: 35 FLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQ 94
Query: 72 MNMAIMLNVD 81
+ + LN+
Sbjct: 95 ILHRVSLNIL 104
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 25.6 bits (57), Expect = 9.8
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 7 GLGRPVSWMRKRDLHILTTNIYTYTGD 33
G+ + W + RDL + I+ G
Sbjct: 294 GIRLTLEWWQSRDLDDIRQRIFQEEGA 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,495,546
Number of extensions: 133256
Number of successful extensions: 961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 508
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)