RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3125
(163 letters)
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 44.8 bits (105), Expect = 3e-07
Identities = 9/64 (14%), Positives = 25/64 (39%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMN 73
+ + +++ +SD W +++ Q +D G+Y+C ++ +
Sbjct: 36 QENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTG 95
Query: 74 MAIM 77
M +
Sbjct: 96 MIRI 99
Score = 43.3 bits (101), Expect = 7e-07
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
+++ +SD W +++ Q +D G+Y+C ++ + M +
Sbjct: 55 HSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRI 99
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 41.1 bits (95), Expect = 5e-06
Identities = 9/66 (13%), Positives = 22/66 (33%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPK 71
+ W +++ + + + + ++ ++ I + D G YEC V K
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEK 89
Query: 72 MNMAIM 77
Sbjct: 90 DAFKRE 95
Score = 37.6 bits (86), Expect = 9e-05
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 102 LLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIM 157
L + + ++ ++ I + D G YEC V K
Sbjct: 40 LTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKRE 95
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 37.7 bits (86), Expect = 1e-04
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 1 MACTVMGLGRPVSWMRKRDLHI---LTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKR 57
C V +P K + Y + + ++ + + + I
Sbjct: 25 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE 84
Query: 58 DAGIYECQV-NTEPKMNMAIMLNV 80
DAG Y C N+ + L V
Sbjct: 85 DAGEYTCLAGNSIGISFHSAWLTV 108
Score = 31.1 bits (69), Expect = 0.023
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 17/99 (17%)
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQ 122
C+V ++ + ++ + +V+ G + Y + + ++
Sbjct: 26 VCKVYSDAQPHIQWIKHVEKNG----------------SKYGPDGLPYLKVLKAAGVNTT 69
Query: 123 NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ + + I DAG Y C N+ + L V
Sbjct: 70 DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 35.4 bits (81), Expect = 5e-04
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 12 VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDE------WNMKIDYAQKRDAGIYECQ 65
K + + I + ++ + S ++ +D G+Y
Sbjct: 30 AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 66 VNTEP 70
+ E
Sbjct: 90 MTDEN 94
Score = 29.3 bits (65), Expect = 0.078
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
Query: 103 LTTNIYTYTGDARFSVIHPQNSDE------WNMKIDYAQKRDAGIYECQVNTEP 150
+ I + ++ + S ++ +D G+Y + E
Sbjct: 41 IDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDEN 94
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 32.2 bits (72), Expect = 0.008
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ +V G P + T+ + ++++ + G
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA---ANETVRHGCLRLNQPTHVNNG 76
Query: 61 IYECQV-NTEPKMNMAIMLNVDDR 83
Y N + + +IM D
Sbjct: 77 NYTLLAANPFGQASASIMAAFMDN 100
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 31.0 bits (69), Expect = 0.019
Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 11/82 (13%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
V G K I + + I A++ G Y
Sbjct: 22 GKVTGTQPITCTWMKFRKQIQESEHMKVENSENG----------SKLTILAARQEHCGCY 71
Query: 63 ECQV-NTEPKMNMAIMLNVDDR 83
V N + L V D+
Sbjct: 72 TLLVENKLGSRQAQVNLTVVDK 93
Score = 27.9 bits (61), Expect = 0.24
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163
+ I A++ G Y V N + L V K
Sbjct: 56 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 30.7 bits (68), Expect = 0.022
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C+V G+ P K + + + + + ++ DAG Y
Sbjct: 18 CSVEGMEEPDIQWVKDGAVVQNLDQLYI--------PVSEQHWIGFLSLKSVERSDAGRY 69
Query: 63 ECQV 66
CQV
Sbjct: 70 WCQV 73
Score = 27.6 bits (60), Expect = 0.26
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 119 IHPQNSDEWNMKIDYAQKRDAGIYECQVNTE--PKMNMAIMLNVDG 162
+ + + ++ DAG Y CQV +++ + L V+G
Sbjct: 46 PVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 31.0 bits (69), Expect = 0.029
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 2/57 (3%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
+ T+ ++ ++ I D G + C V P
Sbjct: 50 IFHYAKGQPYIDEVGTFKERIQWVGDPSWKD--GSIVIHNLDYSDNGTFTCDVKNPP 104
Score = 30.6 bits (68), Expect = 0.036
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 110 YTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
+ ++ ++ I D G + C V P
Sbjct: 66 FKERIQWVGDPSWKD--GSIVIHNLDYSDNGTFTCDVKNPP 104
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 30.5 bits (68), Expect = 0.033
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 3 CTVMGLGRP-VSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGI 61
C G P + W++ I Y + + ++ D G
Sbjct: 27 CPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV----------VPSDKGN 76
Query: 62 YECQV-NTEPKMNMAIMLNV 80
Y C V N +N L+V
Sbjct: 77 YTCVVENEYGSINHTYHLDV 96
Score = 24.0 bits (51), Expect = 5.8
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 119 IHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ + W++ ++ D G Y C V N +N L+V
Sbjct: 54 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 29.7 bits (66), Expect = 0.052
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 33 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 66
D+R S+ + + + I + D+ Y C+V
Sbjct: 56 DSRRSLW---DQGNFPLIIKNLKIEDSDTYICEV 86
Score = 29.7 bits (66), Expect = 0.052
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 113 DARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV 146
D+R S+ + + + I + D+ Y C+V
Sbjct: 56 DSRRSLW---DQGNFPLIIKNLKIEDSDTYICEV 86
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 29.5 bits (65), Expect = 0.075
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C V+ PV K D + + Y N +++ + I+ + D G Y
Sbjct: 23 CRVIASSPPVVTWHKDDRELKQSVKYMKR----------YNGNDYGLTINRVKGDDKGEY 72
Query: 63 ECQV-NTEPKMNMAIMLNVDDRG 84
+ N+ + LNV
Sbjct: 73 TVRAKNSYGTKEEIVFLNVTRHS 95
Score = 24.9 bits (53), Expect = 2.8
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 118 VIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ N +++ + I+ + D G Y + N+ + LNV
Sbjct: 48 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 29.4 bits (65), Expect = 0.11
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 35 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
RF ++ + + I A+ DAG Y ++
Sbjct: 71 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 106
Score = 29.4 bits (65), Expect = 0.11
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 115 RFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 150
RF ++ + + I A+ DAG Y ++
Sbjct: 71 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 106
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 29.2 bits (64), Expect = 0.13
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 14/96 (14%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTG------------DARFSVIHPQNSDE-W 47
+ C + + ++ Y R ++ +
Sbjct: 22 LPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKV 81
Query: 48 NMKIDYAQKRDAGIYECQVNTEPKMNMAIM-LNVDD 82
++I + D G Y C A + L V+D
Sbjct: 82 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117
Score = 28.9 bits (63), Expect = 0.16
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 115 RFSVIHPQNSDE-WNMKIDYAQKRDAGIYECQVNTEPKMNMAIM-LNV 160
R ++ + ++I + D G Y C A + L V
Sbjct: 68 RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester
phosphodiesterase TTHB141 {Thermus thermophilus [TaxId:
274]}
Length = 217
Score = 29.2 bits (64), Expect = 0.19
Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 4/152 (2%)
Query: 11 PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEP 70
PV + DL ++ PQ +K +A +
Sbjct: 56 PVFQVDYADLKAQEPDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRGR 115
Query: 71 KMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMK 130
+ + + + G L F L+ + +HP ++
Sbjct: 116 EGVWVSSFDPLALLALRKAAPGLPLGF----LMAEDHSALLPCLGVEAVHPHHALVTEEA 171
Query: 131 IDYAQKRDAGIYECQVNTEPKMNMAIMLNVDG 162
+ +KR + VN E + + L +DG
Sbjct: 172 VAGWRKRGLFVVAWTVNEEGEARRLLALGLDG 203
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.6 bits (60), Expect = 0.26
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 28 YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 80
+ A S + + Q D+G Y C P + ++++V
Sbjct: 41 WVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93
Score = 27.6 bits (60), Expect = 0.26
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 108 YTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNTEPKMNMAIMLNV 160
+ A S + + Q D+G Y C P + ++++V
Sbjct: 41 WVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 27.4 bits (60), Expect = 0.29
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 27 IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 80
++ +A+ + + I + D G Y C+ N ++ V
Sbjct: 34 NVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
Score = 27.4 bits (60), Expect = 0.29
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 107 IYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
++ +A+ + + I + D G Y C+ N ++ V
Sbjct: 34 NVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 28.1 bits (61), Expect = 0.30
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 1/99 (1%)
Query: 63 ECQVNTEPKMNMAIMLNVDDRGRGARLSAGPLLNFAFPDLLTTNIYTYTGDARFSVIHPQ 122
+ ++ +P + + + A + V
Sbjct: 30 DVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET 89
Query: 123 NSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
D ++ A+K D G+Y V N + + + + V
Sbjct: 90 TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
Score = 26.6 bits (57), Expect = 1.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 42 QNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDD 82
D ++ A+K D G+Y V N + + + + V D
Sbjct: 89 TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.2 bits (59), Expect = 0.39
Identities = 6/57 (10%), Positives = 16/57 (28%)
Query: 11 PVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 67
+K+ + + + F ++ ++ I D YE +
Sbjct: 24 KEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80
Score = 26.0 bits (56), Expect = 0.96
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 94 LLNFAFPDLLTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVN 147
L + + + F ++ ++ I D YE +
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 27.3 bits (59), Expect = 0.44
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 5/83 (6%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
G K + +LT + S ++ D D+G Y
Sbjct: 25 SEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPK--SGDLIFDPVTAFDSGEY 82
Query: 63 ECQVNTE---PKMNMAIMLNVDD 82
CQ + A ++ +
Sbjct: 83 YCQAQNGYGTAMRSEAAHMDAVE 105
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 27.2 bits (59), Expect = 0.44
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
C V G P K D + + + ++ I D
Sbjct: 28 FDCKVEGYPDPEVMWFKDDNPVKESRHFQI---------DYDEEGNCSLTISEVCGDDDA 78
Query: 61 IYECQV-NTEPKMNMAIMLNVD 81
Y C+ N+ + L V+
Sbjct: 79 KYTCKAVNSLGEATCTAELLVE 100
Score = 24.1 bits (51), Expect = 5.1
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVD 161
++ I D Y C+ N+ + L V+
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 26.3 bits (57), Expect = 0.70
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 9/69 (13%)
Query: 1 MACTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAG 60
+ C V V W + + I + + + I+ A K DA
Sbjct: 20 LECEVSEDDANVKWFKNGEEIIP---------GPKSRYRIRVEGKKHILIIEGATKADAA 70
Query: 61 IYECQVNTE 69
Y
Sbjct: 71 EYSVMTTGG 79
Score = 24.0 bits (51), Expect = 5.0
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 122 QNSDEWNMKIDYAQKRDAGIYECQVNTE 149
+ + I+ A K DA Y
Sbjct: 52 VEGKKHILIIEGATKADAAEYSVMTTGG 79
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 26.4 bits (57), Expect = 0.80
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C G P ++ + T+ + + +I Q D G Y
Sbjct: 21 CDTDGEPVPTVTWLRKGQVLSTSARH----------QVTTTKYKSTFEISSVQASDEGNY 70
Query: 63 ECQV-NTEPKMNMAIMLNV 80
V N+E K L +
Sbjct: 71 SVVVENSEGKQEAEFTLTI 89
Score = 25.6 bits (55), Expect = 1.5
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 120 HPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ +I Q D G Y V N+E K L +
Sbjct: 48 VTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 89
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 25.6 bits (55), Expect = 1.3
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C V+ P + + ++ ++I +K D G Y
Sbjct: 23 CDVVSSLPPTIIWKHKGRDVILKKDV-----------RFIVLSNNYLQIRGIKKTDEGTY 71
Query: 63 ECQVNTE 69
C+
Sbjct: 72 RCEGRIL 78
Score = 24.1 bits (51), Expect = 5.9
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 120 HPQNSDEWNMKIDYAQKRDAGIYECQVNTE 149
++I +K D G Y C+
Sbjct: 49 RFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 78
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 26.0 bits (56), Expect = 1.6
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 14 WMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 68
R+ +H + R ++ + N+ + + D+G Y +
Sbjct: 46 GKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
Score = 24.4 bits (52), Expect = 4.9
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 105 TNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQVNT 148
+ R ++ + N+ + + D+G Y +
Sbjct: 57 PKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 25.2 bits (54), Expect = 2.0
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 10/82 (12%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
V+G P K + I ++ + + I D+
Sbjct: 26 VRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV---------CELVIRDVTGEDSASI 76
Query: 63 ECQV-NTEPKMNMAIMLNVDDR 83
+ N + + L V +
Sbjct: 77 MVKAINIAGETSSHAFLLVQAK 98
Score = 24.8 bits (53), Expect = 3.1
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 127 WNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163
+ I D+ + N + + L V K
Sbjct: 61 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 24.8 bits (54), Expect = 2.0
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 58 DAGIYECQVNTEPKMNMAI 76
G Y C EP I
Sbjct: 59 QWGEYSCVFLPEPMGTANI 77
Score = 24.8 bits (54), Expect = 2.0
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 138 DAGIYECQVNTEPKMNMAI 156
G Y C EP I
Sbjct: 59 QWGEYSCVFLPEPMGTANI 77
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 24.8 bits (53), Expect = 3.5
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 3 CTVMGLGRPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIY 62
C G P K I H + D + I K D Y
Sbjct: 27 CDADGFPEPTMSWTKDGEPIENEEEDDE--------KHIFSDDSSELTIRNVDKNDEAEY 78
Query: 63 ECQV-NTEPKMNMAIMLNVDDR 83
C N + + +I L V +
Sbjct: 79 VCIAENKAGEQDASIHLKVFAK 100
Score = 23.7 bits (50), Expect = 7.9
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 135 QKRDAGIYECQV-NTEPKMNMAIMLNVDGK 163
K D Y C N + + +I L V K
Sbjct: 71 DKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 23.7 bits (50), Expect = 6.5
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 26 NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 80
+ + + ++ D+G+Y+C N + + L V
Sbjct: 32 AVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87
Score = 23.7 bits (50), Expect = 6.5
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 106 NIYTYTGDARFSVIHPQNSDEWNMKIDYAQKRDAGIYECQV-NTEPKMNMAIMLNV 160
+ + + ++ D+G+Y+C N + + L V
Sbjct: 32 AVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87
>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 23.7 bits (50), Expect = 8.0
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 3 CTVMGLGRPVSWMR------KRDLHILTTNIYTYTGDA-----RFSVIHPQNSDEWNMKI 51
+ SW+ +L + RFS ++ + + +
Sbjct: 24 VLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDT--FVLTL 81
Query: 52 DYAQKRDAGIYECQVNT 68
++ + G Y C +
Sbjct: 82 SDFRRENEGYYFCSALS 98
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 23.8 bits (50), Expect = 8.2
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 10 RPVSWMRKRDLHILTTNIYTYTGDARFSVIHPQNSDEWN-----MKIDYAQKRDAGIYEC 64
+ + + + + + S++ + + Q D G Y+C
Sbjct: 46 PADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQC 105
Query: 65 QVNTEPKMNMA-IMLNV 80
+V P + I L V
Sbjct: 106 KVKKAPGVANKKIHLVV 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 610,980
Number of extensions: 25861
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 65
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)