BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy313
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A98|B Chain B, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|D Chain D, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 203
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
++AFS+ DS L+F+APD+ + WTDG+NALLG S NDL+TLLS EIK+
Sbjct: 115 ELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDXXSDLTRNDLDTLLSXEIKL 172
Query: 66 RLLDAXXXXXXXXXXXXXXXXRNYDFNF 93
RLLD NYDF +
Sbjct: 173 RLLDLENIQIPDAPPPIPKEPSNYDFVY 200
>pdb|2VSZ|A Chain A, Crystal Structure Of The Elmo1 Ph Domain
pdb|2VSZ|B Chain B, Crystal Structure Of The Elmo1 Ph Domain
Length = 149
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN 44
++AFS+ DS L+F+APD+ + WTDG+NALLG
Sbjct: 113 ELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGK 149
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVF-DYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
D A L + +E T D A ++E+F D+ LG+K+ SK+ D E +++E
Sbjct: 151 DEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAE--MAVEAV 208
Query: 65 IRLLD 69
I ++D
Sbjct: 209 INVMD 213
>pdb|1UCR|A Chain A, Three-Dimensional Crystal Structure Of Dissimilatory
Sulfite Reductase D (Dsrd)
pdb|1UCR|B Chain B, Three-Dimensional Crystal Structure Of Dissimilatory
Sulfite Reductase D (Dsrd)
pdb|1WQ2|A Chain A, Neutron Crystal Structure Of Dissimilatory Sulfite
Reductase D (Dsrd)
pdb|1WQ2|B Chain B, Neutron Crystal Structure Of Dissimilatory Sulfite
Reductase D (Dsrd)
Length = 78
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 27 DEEVFDYWTDGINALLGNKMTSKEADNDLE 56
++EV +YW+ G + G K K+A + E
Sbjct: 48 NDEVLEYWSSGSTTMYGLKGAGKQAAAEHE 77
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 5 PDIAF---SLTL----DSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLET 57
PD +F +LT+ D V++T +FV+ E V W + + AL+ + +T+ + +
Sbjct: 90 PDNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPLTANASRSTFLD 149
Query: 58 LLSMEIKIRL 67
+ +++K++L
Sbjct: 150 KILVKLKMQL 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,075,256
Number of Sequences: 62578
Number of extensions: 62558
Number of successful extensions: 146
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 6
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)