BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy313
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 4 IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEI 63
+ ++AFS+ DS L+F+APD+ + WTDG+NALLG M S NDL+TLLSMEI
Sbjct: 637 VLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEI 694
Query: 64 KIRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
K+RLLD E ++IP PP +P+EP NYDF +
Sbjct: 695 KLRLLDLENIQIPDAPPPIPKEPSNYDFVY 724
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 4 IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEI 63
+ ++AFS+ DS L+F+APD+ + WTDG+NALLG M S NDL+TLLSMEI
Sbjct: 637 VLELAFSILYDSN--CQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEI 694
Query: 64 KIRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
K+RLLD E ++IP PP +P+EP NYDF +
Sbjct: 695 KLRLLDLENIQIPDAPPPIPKEPSNYDFVY 724
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
++AFS+ D E +L+F+AP++ + W DG++ALLG M+S+ +DL+TLLSME+K+
Sbjct: 644 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKL 701
Query: 66 RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
RLLD E ++IP PP VP+EP +YDF +
Sbjct: 702 RLLDLENIQIPEAPPPVPKEPSSYDFVY 729
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
++AFS+ D E +L+F+AP++ + W DG++ALLG M+S+ +DL+TLLSME+K+
Sbjct: 632 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKL 689
Query: 66 RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
RLLD E ++IP PP +P+EP +YDF +
Sbjct: 690 RLLDLENIQIPEAPPPIPKEPSSYDFVY 717
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
++AFS+ D E +L+F+AP++ + W DG++ALLG M+S+ +DL+TLLSME+K+
Sbjct: 632 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKL 689
Query: 66 RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
RLLD E ++IP PP +P+EP +YDF +
Sbjct: 690 RLLDLENIQIPEAPPPIPKEPSSYDFVY 717
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Query: 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKI 65
++AFS+ D E +L+F+AP++ + W DG++ALLG M+S+ +D +TLLSME+K+
Sbjct: 632 ELAFSILYDPDE--TLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDRDTLLSMEMKL 689
Query: 66 RLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
RLLD E ++IP PP VP+EP +YDF +
Sbjct: 690 RLLDLENIQIPEAPPPVPKEPSSYDFVY 717
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 6 DIAFSLTLDSVEITS-LDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
++AFS++ D E + L+F+AP + F WTDG++ALLG+ M S++ DLE LL+ME K
Sbjct: 625 ELAFSISYDRGEEEAYLNFIAPSKREFYLWTDGLSALLGSPMGSEQTRLDLEQLLTMETK 684
Query: 65 IRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
+RLL+ E V IP PP VP P N++F +
Sbjct: 685 LRLLELENVPIPERPPPVPPPPTNFNFCY 713
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 6 DIAFSLTLDSVEITS-LDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
++AFS++ D E + L+F+AP + F WTDG++ALLG+ M S++ DLE LL+ME K
Sbjct: 625 ELAFSISYDHGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSEQTRLDLEQLLTMETK 684
Query: 65 IRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
+RLL+ E V IP HPP VP P N++F +
Sbjct: 685 LRLLELENVPIPEHPPPVPPPPTNFNFCY 713
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 6 DIAFSLTLDSVEITS-LDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64
++AFS++ D E + L+F+AP + F WTDG++ALLG+ M S+ DLE LL+ME K
Sbjct: 625 ELAFSISYDHGEEEAYLNFIAPSKRDFYLWTDGLSALLGSTMGSELTRLDLEQLLTMETK 684
Query: 65 IRLLDAEGVEIPHHPPEVPEEPRNYDFNF 93
+RLL+ E V IP PP VP P N++F +
Sbjct: 685 LRLLELENVPIPEQPPPVPPPPTNFNFCY 713
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 20 SLDFVAPD-EEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHH 78
++D ++ + ++V ++W D I L G ++ S+E +D +LLS+ ++LLD +G++IP
Sbjct: 903 TIDLISSNRDDVSNFW-DSIKLLSGQEIKSQEGLDDYHSLLSINTSVKLLDLDGIDIPKE 961
Query: 79 PPEVPEEPRNYDF 91
P++P P N+DF
Sbjct: 962 TPQIPILPDNFDF 974
>sp|Q8STE5|CED12_CAEEL Cell death abnormality protein 12 OS=Caenorhabditis elegans
GN=ced-12 PE=1 SV=1
Length = 731
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIR 66
+ T D E L + DE W +G+ L+G+K E D +E +L ME+++R
Sbjct: 643 VQLKTTNDMKEGEVLMALTSDETQSVIWLEGLAELIGSKAVKSETDAMVERMLKMELRVR 702
Query: 67 LLDAEGVEIPHHPPEVPEEP 86
LL+ + P PE+P P
Sbjct: 703 LLNVKLTN-PEEKPEIPPIP 721
>sp|A8XEZ1|CED12_CAEBR Cell death abnormality protein 12 OS=Caenorhabditis briggsae
GN=ced-12 PE=3 SV=3
Length = 737
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 24 VAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEVP 83
+ PDE W + + L+GN + + +E +L ME+++RLL+ + + P + P+VP
Sbjct: 666 LTPDETQAGIWQESLAYLVGNTEMRSKTNAIVERMLKMELRVRLLNVKLAD-PENEPDVP 724
Query: 84 EEP 86
P
Sbjct: 725 PIP 727
>sp|Q48841|PEPD_LACSK Probable dipeptidase OS=Lactobacillus sakei PE=3 SV=1
Length = 473
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 2 AKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL-GNKMTSKEADNDLETLLS 60
AKIPD +++ + V I ++DF PD + W++GI + GN + E + + +
Sbjct: 181 AKIPDDCYAVAANQVAIENIDFNDPDNYM---WSEGIQEFVSGNHLNPSETEWNFRKIFG 237
Query: 61 MEI-KIRLLDAEGVEIPHH--PPEVPEEPRNYDFNF 93
+ K R + V PE+ +EP + D F
Sbjct: 238 TDTEKDRHYNTPRVWYAQRYLNPEIKQEPESSDLPF 273
>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=dus3 PE=3 SV=1
Length = 728
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 14 DSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGV 73
D V + P + + W D + L + + D+D E + ++K+ L D
Sbjct: 241 DKVAVARRKIKTPRSDAYLTWLDKTSKALEKNLHGRHFDDDAEGEVGADVKVSLEDVRAA 300
Query: 74 EIPHHPPEVPEEPRNYDF 91
+ PP +P E R F
Sbjct: 301 YV--EPPFLPSEKRRLYF 316
>sp|Q2H1Q1|HIR3_CHAGB Histone transcription regulator 3 homolog OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=HIR3 PE=3 SV=1
Length = 1982
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 38 INALLGNKMTSKEADN---DLETLLSMEIKIRLLDAEGVEIPHHPPEVPE 84
I L N M + D+ D + + + +K LLD++ ++PHHPP PE
Sbjct: 1653 IKKLNSNLMKAGPIDDLITDCYSAIYLHVKPDLLDSDQQKLPHHPPGDPE 1702
>sp|Q63312|PHLB1_RAT Pleckstrin homology-like domain family B member 1 (Fragment)
OS=Rattus norvegicus GN=Phldb1 PE=2 SV=2
Length = 831
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 39 NALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPPEVPEEP 86
+ALL TS N TL +E K +L + VE+P P PE+P
Sbjct: 457 SALLAQNGTSSLPRNLAATLQDIETKRQLALQQKVELPPAEPLSPEDP 504
>sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mit1 PE=1 SV=1
Length = 1418
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 13 LDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLL 59
DS+ SL P E+ F+ IN + NK+TS E ND E L
Sbjct: 1221 FDSILAKSLLATTPKEDEFNKTLSTINLEVANKLTSSEYINDSEMQL 1267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,279,794
Number of Sequences: 539616
Number of extensions: 1296574
Number of successful extensions: 2955
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2940
Number of HSP's gapped (non-prelim): 24
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)