Query psy313
Match_columns 93
No_of_seqs 73 out of 75
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:11:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2999|consensus 100.0 4E-37 8.7E-42 258.9 3.7 93 1-93 618-710 (713)
2 cd01248 PH_PLC Phospholipase C 98.1 4.6E-06 1E-10 56.3 4.4 39 3-41 76-115 (115)
3 PF12814 Mcp5_PH: Meiotic cell 96.7 0.003 6.5E-08 43.5 4.5 36 7-43 87-122 (123)
4 cd00821 PH Pleckstrin homology 93.5 0.16 3.5E-06 29.6 3.8 33 6-40 63-95 (96)
5 smart00233 PH Pleckstrin homol 92.7 0.37 8E-06 28.3 4.6 36 5-42 66-101 (102)
6 KOG0169|consensus 90.0 0.67 1.4E-05 41.4 5.3 36 6-42 87-122 (746)
7 PF00169 PH: PH domain; Inter 88.7 1.3 2.9E-05 26.6 4.6 37 4-42 67-103 (104)
8 cd01246 PH_oxysterol_bp Oxyste 85.2 2.2 4.8E-05 26.0 4.2 33 6-40 58-90 (91)
9 PF15410 PH_9: Pleckstrin homo 82.6 2.8 6.1E-05 28.4 4.2 33 6-40 84-116 (119)
10 cd01222 PH_clg Clg (common-sit 81.6 4.6 0.0001 27.1 4.9 37 6-42 59-95 (97)
11 cd01233 Unc104 Unc-104 pleckst 80.6 4 8.6E-05 26.6 4.2 34 6-42 65-98 (100)
12 cd01253 PH_beta_spectrin Beta- 78.7 5 0.00011 25.8 4.2 34 5-40 70-103 (104)
13 cd00900 PH-like Pleckstrin hom 77.7 7.9 0.00017 22.4 4.6 34 6-39 64-97 (99)
14 cd01260 PH_CNK Connector enhan 77.1 4.5 9.7E-05 25.7 3.6 33 6-40 63-95 (96)
15 cd01254 PH_PLD Phospholipase D 76.2 7.1 0.00015 26.6 4.6 34 6-40 87-120 (121)
16 cd01247 PH_GPBP Goodpasture an 75.9 6 0.00013 25.7 4.0 32 6-39 58-89 (91)
17 cd01265 PH_PARIS-1 PARIS-1 ple 75.5 7.4 0.00016 25.2 4.4 33 6-41 61-93 (95)
18 cd01250 PH_centaurin Centaurin 75.3 7.2 0.00016 23.8 4.1 31 6-39 62-92 (94)
19 PF08458 PH_2: Plant pleckstri 73.4 7.6 0.00016 27.2 4.2 32 9-43 73-104 (110)
20 cd01230 PH_EFA6 EFA6 Pleckstri 72.9 8.5 0.00018 26.6 4.4 35 6-42 77-111 (117)
21 cd01219 PH_FGD FGD (faciogenit 71.5 11 0.00024 24.6 4.5 35 6-43 66-100 (101)
22 cd01252 PH_cytohesin Cytohesin 69.8 14 0.0003 24.8 4.8 25 19-43 90-114 (125)
23 cd01266 PH_Gab Gab (Grb2-assoc 67.6 13 0.00028 24.4 4.2 32 7-41 76-107 (108)
24 cd01235 PH_SETbf Set binding f 66.9 8.9 0.00019 24.1 3.2 22 20-41 79-100 (101)
25 cd01237 Unc112 Unc-112 pleckst 66.2 18 0.0004 25.0 4.9 22 20-41 81-102 (106)
26 cd01238 PH_Tec Tec pleckstrin 64.2 15 0.00033 24.2 4.1 32 6-40 74-105 (106)
27 PF15409 PH_8: Pleckstrin homo 62.1 18 0.00039 24.1 4.1 30 10-40 58-87 (89)
28 cd01251 PH_centaurin_alpha Cen 61.5 28 0.00061 22.8 5.0 34 8-44 69-102 (103)
29 TIGR00673 cynS cyanate hydrata 60.1 12 0.00025 27.5 3.1 52 39-91 40-92 (150)
30 cd01257 PH_IRS Insulin recepto 59.8 21 0.00046 23.9 4.2 33 6-41 69-101 (101)
31 cd01244 PH_RasGAP_CG9209 RAS_G 59.8 23 0.00049 23.6 4.3 30 7-39 67-96 (98)
32 cd01220 PH_CDEP Chondrocyte-de 59.0 29 0.00063 23.0 4.7 33 6-41 64-96 (99)
33 cd01236 PH_outspread Outspread 57.6 23 0.00049 24.0 4.1 31 7-40 72-102 (104)
34 cd01261 PH_SOS Son of Sevenles 51.8 33 0.00072 23.6 4.2 36 6-43 75-110 (112)
35 cd01264 PH_melted Melted pleck 50.0 35 0.00076 23.1 4.0 32 6-40 68-99 (101)
36 KOG1029|consensus 41.5 18 0.0004 33.5 2.0 23 59-81 71-93 (1118)
37 cd01232 PH_TRIO Trio pleckstri 40.9 1E+02 0.0022 21.2 5.3 38 6-43 74-113 (114)
38 cd01225 PH_Cool_Pix Cool (clon 38.7 91 0.002 21.9 4.8 37 4-42 73-109 (111)
39 TIGR00224 pckA phosphoenolpyru 37.4 27 0.00059 30.4 2.3 43 42-84 438-483 (532)
40 PRK02866 cyanate hydratase; Va 37.3 38 0.00082 24.7 2.8 52 39-91 37-89 (147)
41 cd01227 PH_Dbs Dbs (DBL's big 37.0 1E+02 0.0023 21.8 4.9 37 6-43 80-116 (133)
42 cd01259 PH_Apbb1ip Apbb1ip (Am 36.1 75 0.0016 22.5 4.0 40 3-42 65-108 (114)
43 KOG3727|consensus 35.8 45 0.00098 29.7 3.4 41 21-61 437-478 (664)
44 PF06618 DUF1148: Protein of u 34.7 11 0.00024 26.1 -0.3 28 17-45 8-35 (114)
45 KOG2910|consensus 33.4 79 0.0017 24.5 4.1 58 24-88 124-184 (209)
46 cd01245 PH_RasGAP_CG5898 RAS G 32.8 92 0.002 20.8 3.9 32 7-40 66-97 (98)
47 KOG2675|consensus 32.3 31 0.00066 29.7 1.8 44 49-92 187-249 (480)
48 KOG0855|consensus 31.7 35 0.00075 26.3 1.9 30 63-92 14-43 (211)
49 COG3074 Uncharacterized protei 31.5 40 0.00087 22.4 1.9 17 28-44 59-75 (79)
50 COG4170 SapD ABC-type antimicr 31.3 29 0.00064 28.0 1.5 57 19-75 210-284 (330)
51 PTZ00311 phosphoenolpyruvate c 31.0 29 0.00063 30.4 1.5 43 43-85 467-512 (561)
52 cd01241 PH_Akt Akt pleckstrin 30.3 1.2E+02 0.0025 19.8 4.0 36 6-41 65-101 (102)
53 PLN02597 phosphoenolpyruvate c 27.9 35 0.00076 29.9 1.5 63 23-85 418-501 (555)
54 cd01218 PH_phafin2 Phafin2 Pl 25.9 1.9E+02 0.0041 19.5 4.5 34 6-42 65-98 (104)
55 PHA03405 hypothetical protein; 25.6 41 0.00089 24.1 1.3 10 78-87 27-36 (130)
56 PF00356 LacI: Bacterial regul 22.2 1.4E+02 0.003 17.3 2.9 21 39-59 18-38 (46)
57 PF08591 RNR_inhib: Ribonucleo 21.9 37 0.0008 22.5 0.4 18 57-74 2-19 (97)
58 PRK01736 hypothetical protein; 21.7 1.6E+02 0.0035 21.8 3.8 52 6-61 82-138 (190)
59 cd00484 PEPCK_ATP Phosphoenolp 21.6 87 0.0019 27.1 2.7 43 43-85 419-464 (508)
60 PHA01627 DNA binding protein 21.2 1.4E+02 0.0031 20.8 3.2 56 7-64 7-62 (107)
61 cd01224 PH_Collybistin Collybi 21.0 2.2E+02 0.0049 19.7 4.2 34 5-39 71-104 (109)
62 PRK15422 septal ring assembly 20.1 82 0.0018 21.0 1.8 17 28-44 59-75 (79)
No 1
>KOG2999|consensus
Probab=100.00 E-value=4e-37 Score=258.86 Aligned_cols=93 Identities=52% Similarity=0.908 Sum_probs=90.6
Q ss_pred CCCcCcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHchhhhhhhcccCCCCCCCCCC
Q psy313 1 MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPHHPP 80 (93)
Q Consensus 1 ~~~~~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m~S~et~~dv~~Ll~melKlrLLdlegv~IP~~~p 80 (93)
+|++.+|||||+|+.++...|||+|||+++||+|+||||+|+|++|.|++|++|+++||+||+|+||||++||+||+.||
T Consensus 618 nk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~m~s~~T~~dldtlLsMEiKlRLLdleni~iPe~pP 697 (713)
T KOG2999|consen 618 NKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSDMVSELTRADLDTLLSMEIKLRLLDLENIQIPEAPP 697 (713)
T ss_pred hHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCChhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Confidence 57889999999999888788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccC
Q psy313 81 EVPEEPRNYDFNF 93 (93)
Q Consensus 81 ~IPp~P~~~dF~~ 93 (93)
||||+|+||||||
T Consensus 698 pIP~~P~nydf~y 710 (713)
T KOG2999|consen 698 PIPPEPSNYDFVY 710 (713)
T ss_pred CCCcCCCCcceee
Confidence 9999999999998
No 2
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.11 E-value=4.6e-06 Score=56.27 Aligned_cols=39 Identities=31% Similarity=0.596 Sum_probs=33.3
Q ss_pred CcCcceeeEEecCCC-ceeEEEecCChhHHHHHHHHHHHh
Q psy313 3 KIPDIAFSLTLDSVE-ITSLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 3 ~~~~laFSl~~~~~e-~~~l~~va~~~~~~~~W~DGln~L 41 (93)
+..+..|||+|.++- ...|+|||+|++++..|++||+.|
T Consensus 76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 356789999999861 235999999999999999999976
No 3
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.72 E-value=0.003 Score=43.52 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=30.5
Q ss_pred ceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
..+||....++. .|+|+|++++++..|..||+.|+-
T Consensus 87 ~~~si~i~t~~R-~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 87 HNKSIIIVTPDR-SLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred cceEEEEEcCCe-EEEEEeCCHHHHHHHHHHHHHHhh
Confidence 567777777654 599999999999999999999974
No 4
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.45 E-value=0.16 Score=29.63 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=28.5
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
+.+|.|...++ ..+.|.|+++.+...|.+.|+.
T Consensus 63 ~~~f~i~~~~~--~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 63 KNCFEIRTPDG--RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CcEEEEecCCC--cEEEEEeCCHHHHHHHHHHHhc
Confidence 57899988875 3499999999999999999975
No 5
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=92.67 E-value=0.37 Score=28.29 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=29.8
Q ss_pred CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
....|.|..... ..+.|.|+++++...|.+.|+...
T Consensus 66 ~~~~f~l~~~~~--~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 66 KPHCFEIKTADR--RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEEEEecCC--ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 467788877765 349999999999999999998764
No 6
>KOG0169|consensus
Probab=90.02 E-value=0.67 Score=41.42 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=31.0
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
.-.|||++. +....|+++|++++....|++||..|+
T Consensus 87 ~~~fsi~~~-~~~e~ldl~a~s~~~a~~wV~gl~~l~ 122 (746)
T KOG0169|consen 87 DRCFSIIFK-DRYESLDLIANSKEDANIWVSGLRKLI 122 (746)
T ss_pred ceeEEEEec-cccccccccCCCHHHHHHHhhhHHHHH
Confidence 457999993 345579999999999999999999998
No 7
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=88.69 E-value=1.3 Score=26.61 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.0
Q ss_pred cCcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 4 IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 4 ~~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
-.+..|.|....+ ..+.|.|.|+++...|...|+...
T Consensus 67 ~~~~~f~i~~~~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 67 KRKNCFEITTPNG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSSSEEEEEETTS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4567888988886 359999999999999999998754
No 8
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.18 E-value=2.2 Score=25.99 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.6
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
+..|+|....+ ..+.|.|.++++...|...|+.
T Consensus 58 ~~~F~i~~~~~--~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 58 DKCFTIDTGGD--KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CcEEEEEcCCC--CEEEEECCCHHHHHHHHHHHHh
Confidence 46788876543 3599999999999999998863
No 9
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=82.55 E-value=2.8 Score=28.36 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=25.7
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
+..|.|...++. -.-|-|.|+++...|.+.||.
T Consensus 84 ~~VFrL~~~dg~--e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 84 KNVFRLRTADGS--EYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp SSEEEEE-TTS---EEEEE-SSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCC--EEEEECCCHHHHHHHHHHHhh
Confidence 457888877764 388999999999999999996
No 10
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=81.62 E-value=4.6 Score=27.14 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=30.2
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
+.+|+|.........+.+-|+++++-..|+.-|+.++
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 6899997774333359999999999999999998764
No 11
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=80.58 E-value=4 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=27.0
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
+..|+|... + ..+.|.|.++.+...|.+.|+.+.
T Consensus 65 ~~~F~I~t~--~-rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 65 PNTFAVCTK--H-RGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CcEEEEECC--C-CEEEEEcCCHHHHHHHHHHhhhhh
Confidence 457888443 2 249999999999999999998764
No 12
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=78.65 E-value=5 Score=25.78 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=27.2
Q ss_pred CcceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
.+.+|.|....+ ..+-|.|.++.+...|...|+.
T Consensus 70 ~~~~F~l~~~~~--~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLPDG--AEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEecCC--CEEEEECCCHHHHHHHHHHHhc
Confidence 357888886654 3489999999999999998864
No 13
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=77.72 E-value=7.9 Score=22.44 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=27.2
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGIN 39 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln 39 (93)
+..|.|.........+.|.|++.++...|...|.
T Consensus 64 ~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~ 97 (99)
T cd00900 64 PNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQ 97 (99)
T ss_pred CceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHh
Confidence 5688888775223469999999999999998875
No 14
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=77.10 E-value=4.5 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.5
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
+..|.|..... ..+.|.|.++++...|...|+.
T Consensus 63 ~~~F~I~~~~~--~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 63 KYAFKVCHPVY--KSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred ceEEEECCCCC--cEEEEEeCCHHHHHHHHHHHHh
Confidence 45788864432 3488999999999999998863
No 15
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.18 E-value=7.1 Score=26.55 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=26.1
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
..-+.+.....+. .+.+.|.|+.+...|.+.|+.
T Consensus 87 ~~~~~~~i~t~~R-~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 87 GLRHGLKITNSNR-SLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCceEEEEEcCCc-EEEEEeCCHHHHHHHHHHHHh
Confidence 3445555566554 499999999999999999873
No 16
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=75.91 E-value=6 Score=25.69 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=26.1
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGIN 39 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln 39 (93)
+..|.|..... ....+.|.|+.+...|.+.|+
T Consensus 58 ~~~F~i~~~~~--r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 58 ENRFDISVNEN--VVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred CCEEEEEeCCC--eEEEEEeCCHHHHHHHHHHHh
Confidence 46788865442 469999999999999999886
No 17
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.49 E-value=7.4 Score=25.20 Aligned_cols=33 Identities=12% Similarity=0.424 Sum_probs=26.6
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~L 41 (93)
+..|+|.... ....|.|.|+++...|+..|+-.
T Consensus 61 ~~~F~i~t~~---r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 61 KGRFEIHSNN---EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCEEEEEcCC---cEEEEECCCHHHHHHHHHHHHhh
Confidence 5678886533 35899999999999999998754
No 18
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.34 E-value=7.2 Score=23.79 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=24.4
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGIN 39 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln 39 (93)
...|.|.... ..+.|.|.++++...|.+.|+
T Consensus 62 ~~~f~i~~~~---~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 62 RFCFEVISPT---KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred ceEEEEEcCC---cEEEEECCCHHHHHHHHHHHh
Confidence 4567776544 348999999999999999875
No 19
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=73.38 E-value=7.6 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.570 Sum_probs=25.9
Q ss_pred eeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313 9 FSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 9 FSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
|-|.... .+++|-+.|..++..|++||+-||.
T Consensus 73 fgL~T~~---G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 73 FGLKTAQ---GVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred EEEEecC---cEEEEEeCChhhHHHHHHHHHHHHH
Confidence 5554442 3699999999999999999998875
No 20
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.86 E-value=8.5 Score=26.58 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=28.6
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
+..|.|....++. +-|-|+|+++...|...||.--
T Consensus 77 ~~VF~L~~~~g~~--~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 77 PHVFRLRTADWRE--FLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred CcEEEEEcCCCCE--EEEECCCHHHHHHHHHHHHHHH
Confidence 4567777766543 8899999999999999999754
No 21
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=71.54 E-value=11 Score=24.62 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=27.4
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
+.+|.|.... ..+.+.|.++++-..|.+.|+..+.
T Consensus 66 ~~~F~I~~~~---rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 66 PHSFLVSGKQ---RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CceEEEecCC---cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 5567764433 3599999999999999999987664
No 22
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.80 E-value=14 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.9
Q ss_pred eeEEEecCChhHHHHHHHHHHHhhC
Q psy313 19 TSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 19 ~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
....|.|.+..+...|.+.|+..+-
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4577999999999999999988765
No 23
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=67.64 E-value=13 Score=24.40 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=24.8
Q ss_pred ceeeEEecCCCceeEEEecCChhHHHHHHHHHHHh
Q psy313 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~L 41 (93)
..|++... + -.+-|+|.++++...|+..|+-+
T Consensus 76 ~~f~i~t~--~-r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 76 YGFDIETI--V-RDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred eEEEEEeC--C-ccEEEEECCHHHHHHHHHHHHhh
Confidence 45777642 2 35999999999999999999754
No 24
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=66.85 E-value=8.9 Score=24.11 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEecCChhHHHHHHHHHHHh
Q psy313 20 SLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 20 ~l~~va~~~~~~~~W~DGln~L 41 (93)
.+.|.|.++++...|.+.|+..
T Consensus 79 ~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 79 TYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred eEEEECCCHHHHHHHHHHHHhh
Confidence 5889999999999999999865
No 25
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.19 E-value=18 Score=25.01 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEEEecCChhHHHHHHHHHHHh
Q psy313 20 SLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 20 ~l~~va~~~~~~~~W~DGln~L 41 (93)
...+.|.|++|++.|+.+++.-
T Consensus 81 ~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 81 EVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred EEEEECCCHHHHHHHHHHHHHh
Confidence 6899999999999999998764
No 26
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=64.20 E-value=15 Score=24.23 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=24.7
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
...|.|.... . .+.+.|.++++-..|.+.|+.
T Consensus 74 ~~~F~i~t~~--r-~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 74 KYPFQVVHDE--G-TLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred CccEEEEeCC--C-eEEEEcCCHHHHHHHHHHHHh
Confidence 4567776643 2 477889999999999999875
No 27
>PF15409 PH_8: Pleckstrin homology domain
Probab=62.10 E-value=18 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=23.8
Q ss_pred eEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 10 SLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 10 Sl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
.|..++++ .+.++-|.|+.++..|++.|+.
T Consensus 58 ~I~idsg~-~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 58 RIDIDSGD-EIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEEEcCC-eEEEEEcCCHHHHHHHHHHHHh
Confidence 34455654 4789999999999999998874
No 28
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=61.54 E-value=28 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.6
Q ss_pred eeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCC
Q psy313 8 AFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGN 44 (93)
Q Consensus 8 aFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~ 44 (93)
+|.|... + -...|.|.++++...|...|+..+..
T Consensus 69 ~F~i~t~--~-Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVTLVTP--E-RKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEEEEeC--C-eEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 6665443 2 35899999999999999999877653
No 29
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=60.06 E-value=12 Score=27.50 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=35.7
Q ss_pred HHhhCCCCCcHHHHHHHHHHHchhhhhhhcccCCCCCCC-CCCCCCCCCCCCCc
Q psy313 39 NALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPH-HPPEVPEEPRNYDF 91 (93)
Q Consensus 39 n~Llg~~m~S~et~~dv~~Ll~melKlrLLdlegv~IP~-~~p~IPp~P~~~dF 91 (93)
.+++||.-.|+|.+.-+-.+|.+.--. .-.|.+++.=. -+|.+|.+|.=|-|
T Consensus 40 aa~lGQ~~ls~e~A~kla~lLgL~~e~-~~~l~~~P~rg~~~~~~ptdP~iYR~ 92 (150)
T TIGR00673 40 AALYGQAAAPADEARLVGAKLDLDEDS-ILELQMAPLRGCIDPVIPTDPTMYRF 92 (150)
T ss_pred HHHhCCCCCCHHHHHHHHHHhCcCHHH-HHHHhcCCCCCCCCCCCCCCchHHHH
Confidence 578999999999999999999885443 33344443221 34667778876655
No 30
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=59.80 E-value=21 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=26.3
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~L 41 (93)
..+|+|.... ...-|+|.++++...|.+-|+-|
T Consensus 69 ~~~f~i~t~d---r~f~l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 69 RHLIALYTRD---EYFAVAAENEAEQDSWYQALLEL 101 (101)
T ss_pred CeEEEEEeCC---ceEEEEeCCHHHHHHHHHHHhhC
Confidence 4678886643 24899999999999999988743
No 31
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=59.78 E-value=23 Score=23.61 Aligned_cols=30 Identities=3% Similarity=0.168 Sum_probs=24.9
Q ss_pred ceeeEEecCCCceeEEEecCChhHHHHHHHHHH
Q psy313 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGIN 39 (93)
Q Consensus 7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln 39 (93)
..|.|.+.. ..+-+.|+++.+...|.+.|+
T Consensus 67 ~~fqivt~~---r~~yi~a~s~~E~~~Wi~al~ 96 (98)
T cd01244 67 DIITIVCED---DTMQLQFEAPVEATDWLNALE 96 (98)
T ss_pred ceEEEEeCC---CeEEEECCCHHHHHHHHHHHh
Confidence 567887754 259999999999999999876
No 32
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.95 E-value=29 Score=23.00 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=26.1
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~L 41 (93)
+.+|.|... + ..+.+.|+++++-+.|.+.|+.-
T Consensus 64 ~~~F~I~~~--~-ks~~l~A~s~~Ek~~Wi~~i~~a 96 (99)
T cd01220 64 PHCFTIFGG--Q-CAITVAASTRAEKEKWLADLSKA 96 (99)
T ss_pred ceeEEEEcC--C-eEEEEECCCHHHHHHHHHHHHHH
Confidence 457888733 2 34999999999999999999864
No 33
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=57.57 E-value=23 Score=23.95 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=24.0
Q ss_pred ceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
.+|.|.... ....|+|.++++...|...|++
T Consensus 72 ~~f~I~tp~---R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILTPD---KEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEECCC---ceEEEEeCCHHHHHHHHHHHHh
Confidence 455554332 3589999999999999999875
No 34
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=51.85 E-value=33 Score=23.61 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.8
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
.-||-|..... ..+.|.|.++++=..|.+-|.+++-
T Consensus 75 knaF~I~~~~~--~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 75 KNAFEIILKDG--NSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred CceEEEEcCCC--CEEEEEECCHHHHHHHHHHHHHHhc
Confidence 56888876542 3599999999999999999998764
No 35
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=49.96 E-value=35 Score=23.07 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=26.2
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
+.+|.|...+ ....|.|.|+.+...|..-|+.
T Consensus 68 ~~~Fei~tp~---rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 68 PKAFEIFTAD---KTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred CcEEEEEcCC---ceEEEEeCCHHHHHHHHHHHHh
Confidence 4789986665 2499999999999999987764
No 36
>KOG1029|consensus
Probab=41.50 E-value=18 Score=33.49 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=19.9
Q ss_pred HchhhhhhhcccCCCCCCCCCCC
Q psy313 59 LSMEIKIRLLDAEGVEIPHHPPE 81 (93)
Q Consensus 59 l~melKlrLLdlegv~IP~~~p~ 81 (93)
-+|.|||-+|-|.|++||..-||
T Consensus 71 fSIAmkLi~lkLqG~~lP~~LPP 93 (1118)
T KOG1029|consen 71 FSIAMKLIKLKLQGIQLPPVLPP 93 (1118)
T ss_pred HHHHHHHHHHHhcCCcCCCCCCh
Confidence 36899999999999999977666
No 37
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.93 E-value=1e+02 Score=21.16 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=30.9
Q ss_pred cceeeEEecCCC--ceeEEEecCChhHHHHHHHHHHHhhC
Q psy313 6 DIAFSLTLDSVE--ITSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 6 ~laFSl~~~~~e--~~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
++.|.|.+.... .....+-|++.+.-..|+.-|+-++.
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 578999887654 12578999999999999999998764
No 38
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.73 E-value=91 Score=21.88 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.0
Q ss_pred cCcceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 4 IPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 4 ~~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
-..-||-|.-.--|. +-+++.+.++++.|.+=|+...
T Consensus 73 ~~~~aFeI~G~li~~--i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 73 ALKNAFEISGPLIER--IVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred CccceEEEeccCcCc--EEEEeCCHHHHHHHHHHHHhhc
Confidence 345778776554443 8899999999999999887643
No 39
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=37.41 E-value=27 Score=30.39 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=37.2
Q ss_pred hCCCCCcHHHHHHHHHHHchhhh---hhhcccCCCCCCCCCCCCCC
Q psy313 42 LGNKMTSKEADNDLETLLSMEIK---IRLLDAEGVEIPHHPPEVPE 84 (93)
Q Consensus 42 lg~~m~S~et~~dv~~Ll~melK---lrLLdlegv~IP~~~p~IPp 84 (93)
.|+.|.=++|+..|+..++-+++ -+-.+.=|..||..-|-||.
T Consensus 438 ~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~~~fgl~iP~~~pgvp~ 483 (532)
T TIGR00224 438 TGKRISIKDTRAIIDAILDGSLENAEMFTLPIFNLAIPTELPGVDT 483 (532)
T ss_pred CCcEecHHHHHHHHHHHhcCCccCCCceECCccCccccccCCCCCh
Confidence 47899999999999999999887 67778888999988777775
No 40
>PRK02866 cyanate hydratase; Validated
Probab=37.30 E-value=38 Score=24.73 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=35.3
Q ss_pred HHhhCCCCCcHHHHHHHHHHHchhhhhhhcccCCCCCCC-CCCCCCCCCCCCCc
Q psy313 39 NALLGNKMTSKEADNDLETLLSMEIKIRLLDAEGVEIPH-HPPEVPEEPRNYDF 91 (93)
Q Consensus 39 n~Llg~~m~S~et~~dv~~Ll~melKlrLLdlegv~IP~-~~p~IPp~P~~~dF 91 (93)
.+++||.-.|++.+.-+-.+|++.=.+.- .|.+++.=. -+|.+|.+|.=|-|
T Consensus 37 aa~lGQ~~ls~e~A~kla~~LgL~~~~~~-~l~~~P~rg~~~~~~ptdP~iYR~ 89 (147)
T PRK02866 37 AALLGQMTLPAEEAEKVAELLGLDEDAVA-LLQEVPYRGSLPPAVPTDPLIYRF 89 (147)
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCHHHHH-HHhcCCcCCCCCCCCCCCcHHHHH
Confidence 56789999999999999999988555322 244433221 24778888876655
No 41
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.98 E-value=1e+02 Score=21.84 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=31.4
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG 43 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg 43 (93)
+..|.|.+...+ ..+.+-|++++.-..|+.-|+-++-
T Consensus 80 ~~kFeiw~~~~~-~~yilqA~t~e~K~~Wv~~I~~iL~ 116 (133)
T cd01227 80 TKKFEIWYNARE-EVYILQAPTPEIKAAWVNEIRKVLT 116 (133)
T ss_pred ccEEEEEeCCCC-cEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 467888887764 4689999999999999999998884
No 42
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.06 E-value=75 Score=22.48 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=29.5
Q ss_pred CcCcceeeEEecC--C--CceeEEEecCChhHHHHHHHHHHHhh
Q psy313 3 KIPDIAFSLTLDS--V--EITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 3 ~~~~laFSl~~~~--~--e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
...+..|.|-... . ...+-.|+|.|+++..-|+-+|++..
T Consensus 65 APTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 65 SPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 4556667774432 1 13367999999999999999999876
No 43
>KOG3727|consensus
Probab=35.76 E-value=45 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.375 Sum_probs=35.6
Q ss_pred EEEecCChhHHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHch
Q psy313 21 LDFVAPDEEVFDYWTDGINALL-GNKMTSKEADNDLETLLSM 61 (93)
Q Consensus 21 l~~va~~~~~~~~W~DGln~Ll-g~~m~S~et~~dv~~Ll~m 61 (93)
.-+-+-|++|||-|+-|-++-- |+.|+-...+.+|+..++.
T Consensus 437 i~LRCd~E~QYA~WMAaCrLASKGktMADSSY~sEV~sIlsf 478 (664)
T KOG3727|consen 437 IWLRCDNEQQYARWMAACRLASKGKTMADSSYQSEVQSILSF 478 (664)
T ss_pred eEEecCCHHHHHHHHHHhhHhhcCCccccccccHHHHHHHHH
Confidence 5677999999999999988665 6899999999999987764
No 44
>PF06618 DUF1148: Protein of unknown function (DUF1148); InterPro: IPR009529 This family consists of several Maize streak virus proteins of unknown function.
Probab=34.69 E-value=11 Score=26.09 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=17.4
Q ss_pred CceeEEEecCChhHHHHHHHHHHHhhCCC
Q psy313 17 EITSLDFVAPDEEVFDYWTDGINALLGNK 45 (93)
Q Consensus 17 e~~~l~~va~~~~~~~~W~DGln~Llg~~ 45 (93)
|.+++ +|.|---..-+|.||+++|+-.-
T Consensus 8 egtvi-mvvpacwsvwiwrdglsallpal 35 (114)
T PF06618_consen 8 EGTVI-MVVPACWSVWIWRDGLSALLPAL 35 (114)
T ss_pred CCeEE-EEeccceEEeeecCcHHHHhHhh
Confidence 34433 34444444458999999999643
No 45
>KOG2910|consensus
Probab=33.38 E-value=79 Score=24.53 Aligned_cols=58 Identities=31% Similarity=0.539 Sum_probs=34.8
Q ss_pred ecCChhHHHHHHHHHHHhhCCCCCcHHHH---HHHHHHHchhhhhhhcccCCCCCCCCCCCCCCCCCC
Q psy313 24 VAPDEEVFDYWTDGINALLGNKMTSKEAD---NDLETLLSMEIKIRLLDAEGVEIPHHPPEVPEEPRN 88 (93)
Q Consensus 24 va~~~~~~~~W~DGln~Llg~~m~S~et~---~dv~~Ll~melKlrLLdlegv~IP~~~p~IPp~P~~ 88 (93)
+.-+..+.....|-||.++++.+++..-. ++++.|.+ -+.-+ ++.|+-|+.-|+.|.-
T Consensus 124 imddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLes------e~~~e-~e~PevPs~ep~lPek 184 (209)
T KOG2910|consen 124 IMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALES------ELEVE-AELPEVPSTEPELPEK 184 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH------Hhhhh-hhcCCCCCCCCCcccc
Confidence 34567788889999999999988864433 33333332 22222 5555555555555543
No 46
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.84 E-value=92 Score=20.82 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=23.1
Q ss_pred ceeeEEecCCCceeEEEecCChhHHHHHHHHHHH
Q psy313 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINA 40 (93)
Q Consensus 7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~ 40 (93)
..|.|...+. .+..-++|++ ++...|+..|+.
T Consensus 66 ~cFel~~~~~-~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 66 NCFQIVERAL-PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred eEEEEecCCC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence 6777765553 2456677777 999999998864
No 47
>KOG2675|consensus
Probab=32.31 E-value=31 Score=29.73 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHchhhhhhhcccCCC-------------------CCCCCCCCCCCCCCCCCcc
Q psy313 49 KEADNDLETLLSMEIKIRLLDAEGV-------------------EIPHHPPEVPEEPRNYDFN 92 (93)
Q Consensus 49 ~et~~dv~~Ll~melKlrLLdlegv-------------------~IP~~~p~IPp~P~~~dF~ 92 (93)
+=++...+.+++|--=||=-...|+ .-|..|||.||+|+.-+|+
T Consensus 187 eWvKa~l~l~~eL~~YVk~hhtTGl~W~~~g~~~~~~sa~~~~~s~~g~PPPPPP~PPp~~~~ 249 (480)
T KOG2675|consen 187 EWVKAYLALFLELQAYVKEHHTTGLVWNKDGGAAPDASASPKAASAPGAPPPPPPAPPPAPFF 249 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceecCCCCcccccccCcCcccCCCCCCCCCCCCCCcccc
Confidence 3344555556666656665555552 1334556666666666664
No 48
>KOG0855|consensus
Probab=31.73 E-value=35 Score=26.33 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=26.4
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCCcc
Q psy313 63 IKIRLLDAEGVEIPHHPPEVPEEPRNYDFN 92 (93)
Q Consensus 63 lKlrLLdlegv~IP~~~p~IPp~P~~~dF~ 92 (93)
.++|+|++++-=+|...|.+|.-|.-.+|+
T Consensus 14 t~~~~l~~~~tlvp~t~p~vpkK~~ks~~~ 43 (211)
T KOG0855|consen 14 TTLRTLPLRKTLVPKTQPSVPKKSSKSNFF 43 (211)
T ss_pred hhhhcccccccccccccccccccccccCcc
Confidence 467899999988999999999999888876
No 49
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.55 E-value=40 Score=22.37 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHhhCC
Q psy313 28 EEVFDYWTDGINALLGN 44 (93)
Q Consensus 28 ~~~~~~W~DGln~Llg~ 44 (93)
..+.+.|-+-|++|+|+
T Consensus 59 k~e~~~WQerlrsLLGk 75 (79)
T COG3074 59 KEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35788999999999996
No 50
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=31.34 E-value=29 Score=28.04 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=44.0
Q ss_pred eeEEEecCChhHHHHHHHHHHHhh-CCCCCcHHHHHHHH--------HHH--------chhhhhhhcccCC-CCC
Q psy313 19 TSLDFVAPDEEVFDYWTDGINALL-GNKMTSKEADNDLE--------TLL--------SMEIKIRLLDAEG-VEI 75 (93)
Q Consensus 19 ~~l~~va~~~~~~~~W~DGln~Ll-g~~m~S~et~~dv~--------~Ll--------~melKlrLLdleg-v~I 75 (93)
+..-+++.|-...+.|.|-+++|- ||..-|..+++.++ +|+ .+..|-||=-|.| |++
T Consensus 210 TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~PDF~~~lp~KsrL~tL~G~iP~ 284 (330)
T COG4170 210 TTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQALIRAIPDFGSALPHKSRLNTLPGAIPL 284 (330)
T ss_pred ceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHHHHHHhCccccccCcchhhhccCCCcCch
Confidence 457789999999999999999997 68887877766553 343 2567888888888 443
No 51
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=31.01 E-value=29 Score=30.39 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=38.1
Q ss_pred CCCCCcHHHHHHHHHHHchhh---hhhhcccCCCCCCCCCCCCCCC
Q psy313 43 GNKMTSKEADNDLETLLSMEI---KIRLLDAEGVEIPHHPPEVPEE 85 (93)
Q Consensus 43 g~~m~S~et~~dv~~Ll~mel---KlrLLdlegv~IP~~~p~IPp~ 85 (93)
|+.|.=++|+..|+..++-++ +-+-.+.=|.+||..-|-||..
T Consensus 467 G~Ri~l~~TRaiv~ail~G~l~~~~~~~~p~Fgl~iP~~~pgVp~e 512 (561)
T PTZ00311 467 GKRMPLKYTRAIIDAIHDGELKKAEYEKFPIFGLQIPKSCAGVPSE 512 (561)
T ss_pred CcccCHHHHHHHHHHHhcCCccCCceeECCccCccccccCCCCChh
Confidence 678899999999999999888 8888888899999988888765
No 52
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.32 E-value=1.2e+02 Score=19.76 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=23.8
Q ss_pred cceeeEEecC-CCceeEEEecCChhHHHHHHHHHHHh
Q psy313 6 DIAFSLTLDS-VEITSLDFVAPDEEVFDYWTDGINAL 41 (93)
Q Consensus 6 ~laFSl~~~~-~e~~~l~~va~~~~~~~~W~DGln~L 41 (93)
..+|.|.... ....--.|.|.++++...|...|+..
T Consensus 65 ~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 65 PNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 4578886222 11111267899999999999998753
No 53
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=27.91 E-value=35 Score=29.88 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred EecCChhHHHHHHHHH------------------HHhhCCCCCcHHHHHHHHHHHchhh---hhhhcccCCCCCCCCCCC
Q psy313 23 FVAPDEEVFDYWTDGI------------------NALLGNKMTSKEADNDLETLLSMEI---KIRLLDAEGVEIPHHPPE 81 (93)
Q Consensus 23 ~va~~~~~~~~W~DGl------------------n~Llg~~m~S~et~~dv~~Ll~mel---KlrLLdlegv~IP~~~p~ 81 (93)
|.+-++.+|+.+.--. ..=.|+.|.=++|+..|+..++-++ +-+-.+.=|..||..-|-
T Consensus 418 Fl~l~P~~Ya~~L~eki~~~~~~vyLvNTGw~GG~yg~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~p~Fgl~iP~~~~g 497 (555)
T PLN02597 418 FIMLHPTKYAAMLAEKMQKHGATAWLVNTGWSGGSYGVGKRMSLAYTRKIIDAIHSGSLLNAEYVKTPIFGLEVPTEIEG 497 (555)
T ss_pred CcCCCHHHHHHHHHHHHHHcCCCEEEEecCccCCCCCCcceechHHHHHHHHHHhcCCccCCcceECCccCccccccCCC
Confidence 5666777777643211 2233788999999999999999988 678888888999998888
Q ss_pred CCCC
Q psy313 82 VPEE 85 (93)
Q Consensus 82 IPp~ 85 (93)
||..
T Consensus 498 Vp~~ 501 (555)
T PLN02597 498 VPSE 501 (555)
T ss_pred CChh
Confidence 8765
No 54
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.86 E-value=1.9e+02 Score=19.47 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.3
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhh
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Ll 42 (93)
+-+|.|.... . ...+.|+++++=..|.+-|+--.
T Consensus 65 ~n~f~I~~~~--k-Sf~v~A~s~~eK~eWl~~i~~ai 98 (104)
T cd01218 65 RNGWIIKTPT--K-SFAVYAATETEKREWMLHINKCV 98 (104)
T ss_pred cceEEEecCC--e-EEEEEcCCHHHHHHHHHHHHHHH
Confidence 4677776543 2 48999999999999999987543
No 55
>PHA03405 hypothetical protein; Provisional
Probab=25.56 E-value=41 Score=24.12 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.3
Q ss_pred CCCCCCCCCC
Q psy313 78 HPPEVPEEPR 87 (93)
Q Consensus 78 ~~p~IPp~P~ 87 (93)
+||.|||+|+
T Consensus 27 ~PPsIpp~Ps 36 (130)
T PHA03405 27 QPPNISTPPT 36 (130)
T ss_pred CCCCCCCCCC
Confidence 3678888875
No 56
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.19 E-value=1.4e+02 Score=17.33 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.3
Q ss_pred HHhhCCCCCcHHHHHHHHHHH
Q psy313 39 NALLGNKMTSKEADNDLETLL 59 (93)
Q Consensus 39 n~Llg~~m~S~et~~dv~~Ll 59 (93)
++|.|....|+++++-|....
T Consensus 18 r~ln~~~~vs~~tr~rI~~~a 38 (46)
T PF00356_consen 18 RVLNGPPRVSEETRERILEAA 38 (46)
T ss_dssp HHHTTCSSSTHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHH
Confidence 578889999999999887543
No 57
>PF08591 RNR_inhib: Ribonucleotide reductase inhibitor; InterPro: IPR013900 This entry includes Schizosaccharomyces pombe (Fission yeast) Spd1. Spd1p inhibits fission yeast RNR activity by interacting with the Cdc22p [].
Probab=21.86 E-value=37 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=13.5
Q ss_pred HHHchhhhhhhcccCCCC
Q psy313 57 TLLSMEIKIRLLDAEGVE 74 (93)
Q Consensus 57 ~Ll~melKlrLLdlegv~ 74 (93)
.|++++||||====+|-.
T Consensus 2 sL~tVGMRVRKsV~eGYk 19 (97)
T PF08591_consen 2 SLLTVGMRVRKSVPEGYK 19 (97)
T ss_pred chhhhhhhhhhhhccccc
Confidence 588999999976666633
No 58
>PRK01736 hypothetical protein; Reviewed
Probab=21.73 E-value=1.6e+02 Score=21.76 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=29.3
Q ss_pred cceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhC---CC--CCcHHHHHHHHHHHch
Q psy313 6 DIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLG---NK--MTSKEADNDLETLLSM 61 (93)
Q Consensus 6 ~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg---~~--m~S~et~~dv~~Ll~m 61 (93)
+++|.++.-.++.+ +. .-....+.|+.|.-.=.| .. ..|.+.++-++-|.+|
T Consensus 82 ~~~f~llLPdd~~~---l~-~Ra~AL~~W~~GFl~G~gl~~~~~~~~~~e~~E~l~Dl~~I 138 (190)
T PRK01736 82 GFLFQLLLPEGEDS---VF-DRADALAGWVNHFLLGLGLAQPKLDKVSGETGEAIDDLRNI 138 (190)
T ss_pred CcceeeeCCCCCcc---hH-HHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHH
Confidence 55677766543321 11 112466999999876333 22 3366777766666644
No 59
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=21.63 E-value=87 Score=27.15 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=37.6
Q ss_pred CCCCCcHHHHHHHHHHHchhh---hhhhcccCCCCCCCCCCCCCCC
Q psy313 43 GNKMTSKEADNDLETLLSMEI---KIRLLDAEGVEIPHHPPEVPEE 85 (93)
Q Consensus 43 g~~m~S~et~~dv~~Ll~mel---KlrLLdlegv~IP~~~p~IPp~ 85 (93)
|+.|.=++|+..|+..++-++ +-+-.+.=|.+||..-|-||..
T Consensus 419 G~Ri~l~~Traiv~a~~~G~l~~~~~~~~~~fgl~iP~~~~gvp~~ 464 (508)
T cd00484 419 GKRIPLKYTRAIIDAILSGELNNAEYEKDPVFNLAIPTSIPGVPSE 464 (508)
T ss_pred CccccHHHHHHHHHHHHcCCccCCCceECCccCccccccCCCCChh
Confidence 678999999999999999988 5788888889999988888754
No 60
>PHA01627 DNA binding protein
Probab=21.20 E-value=1.4e+02 Score=20.80 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=39.8
Q ss_pred ceeeEEecCCCceeEEEecCChhHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHchhhh
Q psy313 7 IAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALLGNKMTSKEADNDLETLLSMEIK 64 (93)
Q Consensus 7 laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln~Llg~~m~S~et~~dv~~Ll~melK 64 (93)
.|||+-.-+++.....+.--+..+++.|...=+.. .-+.-+.|++.+.+|+..++.
T Consensus 7 N~fsl~ml~~~~~~v~~~~i~~~Eak~~v~~~~~v--SaIGH~sTA~lls~llg~~ip 62 (107)
T PHA01627 7 NAFSLPMKPGEEYTVVIDKIDIEEAKELLENEEFV--SAIGHDATANLLSNLCGVNLP 62 (107)
T ss_pred cccccccccCCceEEEEecCCHHHHHHHhcccCeE--EeeccHHHHHHHHHHhCcccc
Confidence 47888877777667888888999999999621111 234457888888888876544
No 61
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.02 E-value=2.2e+02 Score=19.68 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=28.6
Q ss_pred CcceeeEEecCCCceeEEEecCChhHHHHHHHHHH
Q psy313 5 PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGIN 39 (93)
Q Consensus 5 ~~laFSl~~~~~e~~~l~~va~~~~~~~~W~DGln 39 (93)
..-||-|+....++ ++.|.|.++++=..|...+-
T Consensus 71 ~knafkl~~~~~~~-~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 71 IKNSLKIYSESTDE-WYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred eEEEEEEEEcCCCe-EEEEEECCHHHHHHHHHHHH
Confidence 46788898888654 59999999999999998764
No 62
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.11 E-value=82 Score=21.00 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHhhCC
Q psy313 28 EEVFDYWTDGINALLGN 44 (93)
Q Consensus 28 ~~~~~~W~DGln~Llg~ 44 (93)
+.+.+.|-+-|+.|+|+
T Consensus 59 k~E~~~WqerLr~LLGk 75 (79)
T PRK15422 59 KEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45788999999999995
Done!