RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy313
         (93 letters)



>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 119

 Score = 39.6 bits (92), Expect = 5e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 5   PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGINALL 42
            D  FS+     +  +LD +AP      +W  G+  ++
Sbjct: 82  EDRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKII 118


>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 131

 Score = 39.2 bits (91), Expect = 8e-06
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 14  DSVEITSLDFVAPDEEVFDYWTDGINALLGNKMT 47
           D V++T  +FV+  E V   W + + AL+ + +T
Sbjct: 96  DMVDLTFHNFVSYKENVGKAWAEDVLALVKHPLT 129


>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus
          halodurans [TaxId: 86665]}
          Length = 138

 Score = 27.9 bits (61), Expect = 0.14
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 10/36 (27%)

Query: 1  MAKIPDIAFSLTLDSVEITSLDFVAPDEEVFDYWTD 36
          M ++PDI   +  +          AP E+V++  + 
Sbjct: 1  MTRLPDIKKEVRFN----------APIEKVWEAVST 26


>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein
          CalC {Micromonospora echinospora [TaxId: 1877]}
          Length = 155

 Score = 27.1 bits (59), Expect = 0.29
 Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 10/34 (29%)

Query: 5  PDIAFSLTLDSVEITSLDFVAPDEEVFDYWTDGI 38
          P +  S+T+           A  +  F  + +G 
Sbjct: 4  PFVRHSVTVK----------ADRKTAFKTFLEGF 27


>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 26.0 bits (57), Expect = 0.37
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 62 EIKIRLLDAEGVEI 75
           +K  LL  EG  +
Sbjct: 72 AVKEWLLAHEGHRL 85


>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase
          {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 81

 Score = 24.5 bits (53), Expect = 1.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 62 EIKIRLLDAEGV 73
          E K  LL+ EGV
Sbjct: 70 EEKKFLLEIEGV 81


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
            [TaxId: 274]}
          Length = 1119

 Score = 24.0 bits (51), Expect = 3.5
 Identities = 3/19 (15%), Positives = 10/19 (52%)

Query: 58   LLSMEIKIRLLDAEGVEIP 76
            L ++ + ++ LD +   + 
Sbjct: 1092 LQALALDVQTLDEKDNPVD 1110


>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain
           {Serratia marcescens [TaxId: 615]}
          Length = 358

 Score = 24.0 bits (51), Expect = 4.3
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 14  DSVEITSLDFVAPDEEVF---DYWTDGINALLGNKMTSKEADNDLETLLSM 61
           +  +++  D  A  ++       W D      G  M  K+A  DL+ L S+
Sbjct: 90  EDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSI 140


>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus
          cereus [TaxId: 1396]}
          Length = 143

 Score = 23.2 bits (49), Expect = 5.8
 Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 12 TLDSVEITSLDFVAPDEEVFDYWTD 36
          TL+ ++ T + F A  ++V+   + 
Sbjct: 6  TLNDIKQT-IVFNASIQKVWSVVST 29


>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein
          {AcMNPV (Autographa californica nuclear polyhedrosis
          virus) [TaxId: 46015]}
          Length = 102

 Score = 22.4 bits (48), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 5  PDIAFSLTLDSVEITSLDFVAPDE 28
          PDI  +  ++S +   LDF+  DE
Sbjct: 3  PDIIVNAQINSEDENVLDFIIEDE 26


>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock
          protein ATPase homolog 1, AHSA1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 132

 Score = 22.6 bits (48), Expect = 8.1
 Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 13 LDSVEIT-SLDFVAPDEEVFDYWTD 36
          + + +IT    F+   EE++  +T 
Sbjct: 1  IPTCKITLKETFLTSPEELYRVFTT 25


>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 133

 Score = 22.6 bits (48), Expect = 9.1
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 25 APDEEVFDYWTD 36
           P  EV+D+  +
Sbjct: 15 KPWAEVYDFAAN 26


>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 164

 Score = 22.6 bits (47), Expect = 9.9
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 14 DSVEIT-SLDFVAPDEEVFDYWTD 36
          + VE+     +    E V++ WT 
Sbjct: 5  EHVEVEIEKLYKFSPELVYEAWTK 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,967
Number of extensions: 15025
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 28
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)