RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3132
(507 letters)
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 723 bits (1869), Expect = 0.0
Identities = 249/457 (54%), Positives = 326/457 (71%), Gaps = 6/457 (1%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V NPA E + +VPD G D AI +A AF+ W +TT +ER +L+RW + +
Sbjct: 1 VINPATGEVIGEVPDAGAADADAAIDAAAAAFKTWRKTTARERAAILRRWADLIRERAED 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGV 166
LA ++T E GKP E+ GEV YA SF++WF+EEARR YG +PSP K +L++++P+GV
Sbjct: 61 LARLLTLEQGKPLAEARGEVDYAASFLEWFAEEARRIYGRTIPSPAPGKRILVIKQPVGV 120
Query: 167 VGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVV 226
V ITPWNFP AMITRK+APALAAGCT V+KPAE+TPL+ALALA LA EA +P GVLNVV
Sbjct: 121 VAAITPWNFPAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAEEAGLPAGVLNVV 180
Query: 227 TSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYS 286
T S +G+ LC SP V ISFTGST VGK+L + + +KR+SLELGGNAPFIV+
Sbjct: 181 TGS---PAEIGEALCASPRVRKISFTGSTAVGKLLMAQAADTVKRVSLELGGNAPFIVFD 237
Query: 287 NANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKND 346
+A+L KAV GA+A+KFRN GQ CV ANR + E ++D+FVE L VE K G+ ++
Sbjct: 238 DADLDKAVDGAIASKFRNAGQTCVCANRIYVHESIYDEFVEKL-VERVKKLKVGN-GLDE 295
Query: 347 KCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCY 406
++GPLIN VEKV+++V+DA++KGAKV+ GG ++ LG F+ PT+LT++T DML
Sbjct: 296 GTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGKRLG-LGGYFYEPTVLTDVTDDMLIM 354
Query: 407 TEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEG 466
EE FGPVA I F TE+E + AN++ GLA Y FT D+++AWRV + L+ GMVGIN G
Sbjct: 355 NEETFGPVAPIIPFDTEDEVIARANDTPYGLAAYVFTRDLARAWRVAEALEAGMVGINTG 414
Query: 467 IISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCF 503
+IS EA FGGVKESGLGREG + G+EE+ + KY+
Sbjct: 415 LISDAEAPFGGVKESGLGREGGKEGLEEYLETKYVSL 451
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 645 bits (1667), Expect = 0.0
Identities = 259/479 (54%), Positives = 346/479 (72%), Gaps = 8/479 (1%)
Query: 30 TQAYINGEWVHS--SKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
TQ I G+W + K FPVYNPA E +A+VP MG + AI SA +AF WS+ T
Sbjct: 25 TQGLIGGKWTDAYDGKTFPVYNPATGEVIANVPCMGRAETNDAIASAHDAFPSWSKLTAS 84
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
ER +L+RW + NK+ LA++MT E GKP E++GEV Y SF+++F+EEA+R YG++
Sbjct: 85 ERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKEAIGEVAYGASFLEYFAEEAKRVYGDI 144
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+PSP + LL++++P+GVVG ITPWNFP+AMITRKV PALAAGCT V+KP+E TPLTAL
Sbjct: 145 IPSPFPDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALAAGCTVVVKPSELTPLTAL 204
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
A A LA +A IP GVLNVV +A +G L SP V I+FTGST VGK L + +
Sbjct: 205 AAAELALQAGIPPGVLNVVMG---DAPEIGDALLASPKVRKITFTGSTAVGKKLMAGAAA 261
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
+KR+SLELGGNAPFIV+ +A+L AV GA+A+KFRN GQ CV ANR L+QE ++D+F E
Sbjct: 262 TVKRVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQTCVCANRILVQEGIYDKFAE 321
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
+ + + GD + + GPLIN A V+KV+S VQDA+SKGAKV+LGG + + LG
Sbjct: 322 AFSKAV-QKLVVGDGFE-EGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHS-LG 378
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
F+ PT+L ++T DML + EEVFGPVA +FKTEEE++ +AN++ GLA Y FT D+
Sbjct: 379 GTFYEPTVLGDVTEDMLIFREEVFGPVAPLTRFKTEEEAIAIANDTEAGLAAYIFTRDLQ 438
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFGNL 506
+AWRV + L+ G+VG+NEG+IS A FGGVK+SGLGREGS++G++E+ +IKY+C GN+
Sbjct: 439 RAWRVSEALEYGIVGVNEGLISTEVAPFGGVKQSGLGREGSKYGIDEYLEIKYVCLGNM 497
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 593 bits (1530), Expect = 0.0
Identities = 243/453 (53%), Positives = 319/453 (70%), Gaps = 5/453 (1%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
VYNPA E + VPD GV++ + AI +A EAF+ W TT KER +L++W + NK
Sbjct: 1 VYNPATGEIIGSVPDQGVDETEAAIRAAYEAFKTWRATTAKERSSLLRKWYNLMMENKDD 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGV 166
LA ++T E+GKP E+ GE++YA SF++WF+EEA+R YG+ +PSP K L+++++P+GV
Sbjct: 61 LARLITLENGKPLKEAKGEILYAASFLEWFAEEAKRVYGDTIPSPQSDKRLIVIKQPVGV 120
Query: 167 VGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVV 226
ITPWNFP AMITRK ALAAGCT V+KPAE TPL+ALALA LA +A IPKGVLNV+
Sbjct: 121 CAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVLNVI 180
Query: 227 TSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYS 286
T SR VG +L TSP V ISFTGST VGKIL + +K++S+ELGGNAPFIV+
Sbjct: 181 TGSRAKE--VGNVLTTSPLVRKISFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFD 238
Query: 287 NANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKND 346
+A+L +AV GAMA+KFRN GQ CV ANR + + ++D+F + L E K G+
Sbjct: 239 DADLDQAVEGAMASKFRNAGQTCVCANRLYVHDGIYDEFAKKL-AEAVKKLKVGNGLDE- 296
Query: 347 KCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCY 406
GPLIN VEKV+ + DA+ KGAKV+ GGK +LG FF PT+L+N+T DML
Sbjct: 297 GVTQGPLINEKAVEKVEKHIADAVEKGAKVVT-GGKRHELGGNFFEPTVLSNVTADMLVS 355
Query: 407 TEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEG 466
EE FGP+A KF EEE + +AN++ GLA YFF+ D+S+ WRV + L+ GMVGIN G
Sbjct: 356 KEETFGPLAPVFKFDDEEEVIAIANDTEVGLAAYFFSRDLSRIWRVAEALEYGMVGINTG 415
Query: 467 IISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+IS+ A FGGVK+SGLGREGS++G+EE+ + K
Sbjct: 416 LISNVVAPFGGVKQSGLGREGSKYGIEEYLETK 448
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 562 bits (1450), Expect = 0.0
Identities = 213/464 (45%), Positives = 290/464 (62%), Gaps = 9/464 (1%)
Query: 38 WVHS-SKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRW 96
WV S S+ V NPA E +A VP EDV A+ +A+ AF+ W++T P ER +L +
Sbjct: 1 WVDSSSETIEVINPATGEVIATVPAATAEDVDAAVAAARAAFKAWAKTPPSERAAILLKA 60
Query: 97 LKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKE 156
LE + LAE+ T E+GKP E+ GEV A + +++ AR+ GE +PS
Sbjct: 61 ADLLEERRDELAELETLETGKPLAEARGEVPRAIDTLRYYAGLARKLEGETLPSD-PGVL 119
Query: 157 LLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEA 216
REPLGVVG ITPWNFP+ + K+APALAAG T V+KP+E TPLTAL LA L EA
Sbjct: 120 AYTRREPLGVVGAITPWNFPLLLAAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEA 179
Query: 217 QIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLEL 276
+P GVLNVVT S + VG L P V +SFTGST+VG+ + ++ +KR++LEL
Sbjct: 180 GLPPGVLNVVTGS---GSEVGDALVEHPDVDKVSFTGSTEVGRRIAKAAAKNLKRVTLEL 236
Query: 277 GGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKS 336
GG P IV+ +A+L AV GA+ F N GQ C A +R L+ E ++D+FVE L VE KS
Sbjct: 237 GGKNPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERL-VEAAKS 295
Query: 337 FIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTIL 396
GD + ++GPLI+ Q E+V S ++DA +GAK++ GG + G F PT+L
Sbjct: 296 LKVGD-PLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGY-FVEPTVL 353
Query: 397 TNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKL 456
++TPDM EE+FGPV I FK E+E++ +AN++ GLA FTND+ +A RV ++L
Sbjct: 354 ADVTPDMRIAQEEIFGPVLSVIPFKDEDEAIELANDTEYGLAAGVFTNDLERALRVARRL 413
Query: 457 QVGMVGINEGIISHTEAA-FGGVKESGLGREGSRHGMEEFTQIK 499
+ GMV IN+ EA FGG K+SG GREG + G+EE+T+ K
Sbjct: 414 EAGMVWINDYTTGDPEALPFGGFKQSGFGREGGKEGLEEYTETK 457
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 542 bits (1399), Expect = 0.0
Identities = 218/475 (45%), Positives = 307/475 (64%), Gaps = 11/475 (2%)
Query: 30 TQAYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKER 89
+ I+GEWV + V NPA E +A VP EDV A+ +A+ AFE WS+ + +ER
Sbjct: 1 YKLLIDGEWVDGASTIEVINPATGEVIATVPAATAEDVDAAVAAARAAFEAWSRLSAEER 60
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP 149
+L+R LE + LA ++T E+GKP +E+ GE+ A F+ +++EEARR GE +P
Sbjct: 61 AAILRRIADLLEARAEELAALITLETGKPISEARGEIARAADFIRYYAEEARRLEGETIP 120
Query: 150 SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALAL 209
+ K + L+ REPLGVVG ITPWNFP+A+ K+APALAAG T V+KP+E TPL+ALAL
Sbjct: 121 TD-KGSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPSEQTPLSALAL 179
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
A LA EA +P GVLNVVT VG L P V ISFTGST VG+ + + + +
Sbjct: 180 AELAAEAGLPAGVLNVVTGGGA---EVGDALVAHPDVDAISFTGSTAVGRAIAAAAAANL 236
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
K ++LELGG +P IV +A+L AV A+ F N GQ C AA+R ++ E V+D+FVE L
Sbjct: 237 KPVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDEFVERL 296
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK 389
V S GD + +LGPLI+ Q+++V+ ++DA+++GA+++ GG + G
Sbjct: 297 -VARAASLKVGD-PLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGK---RPGGY 351
Query: 390 FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQA 449
F PTIL +TPDM EE+FGPV I+FK EEE++ +AN++ GLA FT D+++A
Sbjct: 352 FVEPTILEGVTPDMRIAREEIFGPVLPVIRFKDEEEAIELANDTEYGLAAAIFTRDLARA 411
Query: 450 WRVGKKLQVGMVGINEGIISHTE--AAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
+RV ++L+ GMVGIN+ FGGVK+SGLGREG ++G+EEFT++K +
Sbjct: 412 FRVARRLEAGMVGINDYTGGADIAYLPFGGVKQSGLGREGGKYGLEEFTEVKTVT 466
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 513 bits (1323), Expect = e-180
Identities = 235/476 (49%), Positives = 321/476 (67%), Gaps = 8/476 (1%)
Query: 31 QAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKE 88
QA INGEW+ ++ + V NPAN + L VP MG ++ + AI +A A W T KE
Sbjct: 12 QALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKE 71
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV 148
R +L+RW + ++ LA +MT E GKP E+ GE+ YA SF++WF+EE +R YG+ +
Sbjct: 72 RANILRRWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTI 131
Query: 149 PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
P K L+++++P+GV ITPWNFP AMITRK PALAAGCT V+KPA TP +ALA
Sbjct: 132 PGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALA 191
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG 268
LA LA A IP GV NVVT S A +VG L ++P V +SFTGST++G+ L C++
Sbjct: 192 LAELAIRAGIPAGVFNVVTGS---AGAVGGELTSNPLVRKLSFTGSTEIGRQLMEQCAKD 248
Query: 269 IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEM 328
IK++SLELGGNAPFIV+ +A+L KAV GA+A+KFRN GQ CV ANR +Q+ V+D+F E
Sbjct: 249 IKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEK 308
Query: 329 LKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGS 388
L+ ++K I GD +GPLI+ V KV+ + DA+ KGA+V+ GGK +LG
Sbjct: 309 LQQAVSKLHI-GD-GLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVC-GGKAHELGG 365
Query: 389 KFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQ 448
FF PTIL ++ + EE FGP+A +FK E + + AN++ GLA YF+ D+S+
Sbjct: 366 NFFQPTILVDVPANAKVAKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSR 425
Query: 449 AWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFG 504
+RVG+ L+ G+VGIN GIIS+ A FGG+K SGLGREGS++G+E++ +IKYMC G
Sbjct: 426 VFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG 481
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 503 bits (1297), Expect = e-176
Identities = 196/433 (45%), Positives = 281/433 (64%), Gaps = 6/433 (1%)
Query: 68 QYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVV 127
A+ +A+ AF+ W+ P ER +L++ LE ++ LA + T E+GKP E+LGEV
Sbjct: 1 DAAVAAARAAFKAWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALGEVA 60
Query: 128 YANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPA 187
A +++ ARR +GE++PSP + ++ REPLGVVG ITPWNFP+ + K+APA
Sbjct: 61 RAADTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPA 120
Query: 188 LAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVA 247
LAAG T V+KP+E TPLTAL LA L EA +P GVLNVVT + VG L + P V
Sbjct: 121 LAAGNTVVLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGD---GDEVGAALASHPRVD 177
Query: 248 GISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQ 307
ISFTGST VGK + ++ +KR++LELGG +P IV+ +A+L AV GA+ F N GQ
Sbjct: 178 KISFTGSTAVGKAIMRAAAENLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAGQ 237
Query: 308 ACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQ 367
C AA+R L+ E ++D+FVE L VE K+ G+ ++GPLI+ AQ+++V + ++
Sbjct: 238 VCTAASRLLVHESIYDEFVERL-VERVKALKVGNPLD-PDTDMGPLISAAQLDRVLAYIE 295
Query: 368 DAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESL 427
DA ++GAK++ GG ++ F PT+LT++ PDM EE+FGPV I FK EEE++
Sbjct: 296 DAKAEGAKLLCGGKRLEGGKGYFVPPTVLTDVDPDMPIAQEEIFGPVLPVIPFKDEEEAI 355
Query: 428 CVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIIS-HTEAAFGGVKESGLGRE 486
+AN++ GLA FT D+ +A RV ++L+ G V IN+ + A FGGVK+SG+GRE
Sbjct: 356 ELANDTEYGLAAGVFTRDLERALRVAERLEAGTVWINDYSVGAEPSAPFGGVKQSGIGRE 415
Query: 487 GSRHGMEEFTQIK 499
G +G+EE+T+ K
Sbjct: 416 GGPYGLEEYTEPK 428
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 454 bits (1171), Expect = e-157
Identities = 182/458 (39%), Positives = 265/458 (57%), Gaps = 10/458 (2%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQTTPKERGIVLKRWLKELEGNK 104
NPA E A VP+ DV A+ +A+ AFE W + TP ERG +L+R +E N
Sbjct: 1 SINPATGEPWARVPEASAADVDRAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANA 60
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPL 164
+ LAE+ T+++GK E+ +V Y + +++ A + G ++P REPL
Sbjct: 61 EELAELETRDNGKLIRETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKGDYLNFTRREPL 120
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLN 224
GVV ITPWN P+ ++ +K+APALAAG T V+KP+E TP + L LA LA EA P GV+N
Sbjct: 121 GVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPGVVN 180
Query: 225 VVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIV 284
VVT G+ L P VA I+FTG T+ G+ + ++ + ++LELGG +P IV
Sbjct: 181 VVTG---FGPETGEALVEHPLVAKIAFTGGTETGRHIARAAAENLAPVTLELGGKSPNIV 237
Query: 285 YSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK 344
+ +A+L AV+G +A F GQ CVA +R L+Q ++D+FVE L V ++ GD
Sbjct: 238 FDDADLDAAVNGVVAGIFAAAGQTCVAGSRLLVQRSIYDEFVERL-VARARAIRVGD-PL 295
Query: 345 NDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK---FFAPTILTNITP 401
+ + +GPL Q+EKV+ V A +GA+V+ GG + + FF PTIL ++T
Sbjct: 296 DPETQMGPLATERQLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILADVTN 355
Query: 402 DMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMV 461
DM EEVFGPV I F EEE++ +AN+S GLA +T D+++A RV + ++ G V
Sbjct: 356 DMRIAQEEVFGPVLSVIPFDDEEEAIALANDSEYGLAAGIWTRDLARAHRVARAIEAGTV 415
Query: 462 GINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+N + FGG K+SG+GRE + E+TQ K
Sbjct: 416 WVNTYRALSPSSPFGGFKDSGIGRENGIEAIREYTQTK 453
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 452 bits (1166), Expect = e-156
Identities = 184/472 (38%), Positives = 274/472 (58%), Gaps = 13/472 (2%)
Query: 33 YINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
YINGE+V SS + V NPA E +A VP ED A+ +A+ A + W + ER
Sbjct: 1 YINGEFVPSSSGETIDVLNPATGEVVATVPAATAEDADRAVDAAEAAQKAWERLPAIERA 60
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPS 150
L++ + N LA+++ +E GK + + EV + ++D+ +E ARR GE++PS
Sbjct: 61 AYLRKLADLIRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEWARRIEGEIIPS 120
Query: 151 PVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALA 210
++ + + + P+GVV I PWNFP +I RK+APAL G T VIKP+E+TPL AL A
Sbjct: 121 DRPNENIFIFKVPIGVVAGILPWNFPFFLIARKLAPALVTGNTIVIKPSEETPLNALEFA 180
Query: 211 ALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIK 270
L EA +P GVLN+VT + VG L P V IS TGST+ G+ + ++ I
Sbjct: 181 ELVDEAGLPAGVLNIVTGR---GSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAENIT 237
Query: 271 RLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLK 330
++SLELGG AP IV +A+L AV + ++ NCGQ C A R + E ++D+F+E L
Sbjct: 238 KVSLELGGKAPAIVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDIYDEFMEKL- 296
Query: 331 VEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKF 390
VE K+ GD + ++GPL+N A ++KV+ +V+ A+ GA ++ GG + F
Sbjct: 297 VEKMKAVKVGD-PFDAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYF 355
Query: 391 FAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAW 450
+ PT+LTN+ DM EE+FGPV +KF + +E++ +AN+S GL Y +T +++ A
Sbjct: 356 YEPTVLTNVRQDMEIVQEEIFGPVLPVVKFSSLDEAIELANDSEYGLTSYIYTENLNTAM 415
Query: 451 RVGKKLQVGMVGINEGIISHTEAAFG---GVKESGLGREGSRHGMEEFTQIK 499
R +L+ G IN + EA G G K+SGLG +HG+EE+ Q K
Sbjct: 416 RATNELEFGETYINRE---NFEAMQGFHAGWKKSGLGGADGKHGLEEYLQTK 464
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 440 bits (1134), Expect = e-151
Identities = 186/479 (38%), Positives = 275/479 (57%), Gaps = 19/479 (3%)
Query: 30 TQAYINGEWVHS--SKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWS--QTT 85
T +IN E+V S K FP NPA +E + V + EDV A+ +A+ AFE +
Sbjct: 4 TGLFINNEFVDSVSGKTFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWRKMD 63
Query: 86 PKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEARRTY 144
P+ERG +L + +E ++ LA + + ++GKP ES G+V + + +++ A +
Sbjct: 64 PRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLRYYAGWADKIQ 123
Query: 145 GELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
G+ +P + REP+GV G I PWNFP+ M+ K+APALAAG T V+KPAE TPL
Sbjct: 124 GKTIPID-GNFLAYTRREPIGVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPAEQTPL 182
Query: 205 TALALAALAHEAQIPKGVLNVVTSS-RTNANSVGKLLCTSPHVAGISFTGSTQVGKILYS 263
+AL LA L EA P GV+N+V T G + + V I+FTGST VG+ +
Sbjct: 183 SALYLAELIKEAGFPPGVVNIVPGFGPT----AGAAISSHMDVDKIAFTGSTAVGRTIME 238
Query: 264 HCSQ-GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
++ +K+++LELGG +P IV+ +A+L KAV A F N GQ C A +R +QE ++
Sbjct: 239 AAAKSNLKKVTLELGGKSPNIVFDDADLDKAVEWAAFGIFFNQGQCCCAGSRIFVQESIY 298
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D+FVE K + + GD + GP ++ AQ +K+ S ++ +GA ++ GG +
Sbjct: 299 DEFVEKFK-ARAEKRVVGD-PFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGER 356
Query: 383 VTKLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
GSK F PT+ T++ DM EE+FGPV +KFKTE+E + AN++ GLA
Sbjct: 357 H---GSKGYFIQPTVFTDVKDDMKIAKEEIFGPVVTILKFKTEDEVIERANDTEYGLAAG 413
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
FT DI++A RV + L+ G V +N + FGG K+SG GRE G+EE+TQ+K
Sbjct: 414 VFTKDINKALRVSRALKAGTVWVNTYNVFDAAVPFGGFKQSGFGRELGEEGLEEYTQVK 472
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 431 bits (1111), Expect = e-148
Identities = 185/479 (38%), Positives = 270/479 (56%), Gaps = 30/479 (6%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
YI+G WV ++ V NPA +E + VP DV A+ +A+ AF WS T+ +ER
Sbjct: 2 YIDGAWVAPAGTETIDVINPATEEVIGTVPLGTAADVDRAVAAARRAFPAWSATSVEERA 61
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTES--------LGEVVYANSFVDWFSEEARR 142
+L+R + E LA+ +T E G P T + +G + A + F E RR
Sbjct: 62 ALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLGIGHLRAAADALKDFEFEERR 121
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
LV VREP+GV GLITPWN+P+ I KVAPALAAGCT V+KP+E
Sbjct: 122 G-NSLV-----------VREPIGVCGLITPWNWPLNQIVLKVAPALAAGCTVVLKPSEVA 169
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
PL+A+ LA + EA +P GV N+V VG+ L P V +SFTGST+ GK +
Sbjct: 170 PLSAIILAEILDEAGLPAGVFNLVNGD---GPVVGEALSAHPDVDMVSFTGSTRAGKRVA 226
Query: 263 SHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+ +KR++LELGG + I+ +A+L+KAV +AA F N GQ+C A R L+ +
Sbjct: 227 EAAADTVKRVALELGGKSANIILDDADLEKAVPRGVAACFANSGQSCNAPTRMLVPRSRY 286
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG-G 381
+ E+ ++++ GD LGPL + AQ ++V +Q I +GA+++ GG G
Sbjct: 287 AEAEEIAA-AAAEAYVVGDPRD-PATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGGPG 344
Query: 382 KVTKLGSKFFA-PTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
+ L +F PT+ ++TPDM EE+FGPV I + E+E++ +AN++ GLAGY
Sbjct: 345 RPEGLERGYFVKPTVFADVTPDMTIAREEIFGPVLSIIPYDDEDEAIAIANDTPYGLAGY 404
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
++ D +A V ++L+ G V IN G + A FGG K+SG GRE R+G+EEF ++K
Sbjct: 405 VWSADPERARAVARRLRAGQVHIN-GAAFNPGAPFGGYKQSGNGREWGRYGLEEFLEVK 462
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 426 bits (1097), Expect = e-146
Identities = 181/438 (41%), Positives = 266/438 (60%), Gaps = 11/438 (2%)
Query: 66 DVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGE 125
DV A +A A + W+ T P+ER +L++ + LE + +A+ + +ESG ++ E
Sbjct: 1 DVDRAYAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAFE 60
Query: 126 VVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVA 185
V A + + + RR GE++PS V KE ++ R PLGVVG+I+P+NFP+ + R VA
Sbjct: 61 VGAAIAILREAAGLPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPLILAMRSVA 120
Query: 186 PALAAGCTCVIKPAEDTPLT-ALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSP 244
PALA G V+KP TP+T L +A + EA +PKGVLNVV + +G L P
Sbjct: 121 PALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNVVP---GGGSEIGDALVEHP 177
Query: 245 HVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRN 304
V ISFTGST VG+ + + +K+++LELGGN P IV +A+L AVS A F +
Sbjct: 178 RVRMISFTGSTAVGRHIGELAGRHLKKVALELGGNNPLIVLDDADLDLAVSAAAFGAFLH 237
Query: 305 CGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDS 364
GQ C+AA R L+ E V+D+FVE L V K+ GD D +GPLIN QV++V +
Sbjct: 238 QGQICMAAGRILVHESVYDEFVEKL-VAKAKALPVGDPRDPD-TVIGPLINERQVDRVHA 295
Query: 365 IVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEE 424
IV+DA++ GA++ L GG L F+ PT+L+++TPDM + EE+FGPVA I F +E
Sbjct: 296 IVEDAVAAGARL-LTGGTYEGL---FYQPTVLSDVTPDMPIFREEIFGPVAPVIPFDDDE 351
Query: 425 ESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISH-TEAAFGGVKESGL 483
E++ +AN++ GL+ FT D+ +A ++L+ GMV IN+ ++ FGGVK SG
Sbjct: 352 EAVELANDTEYGLSAAVFTRDLERAMAFAERLETGMVHINDQTVNDEPHVPFGGVKASGG 411
Query: 484 GREGSRHGMEEFTQIKYM 501
GR G +EEFT+ +++
Sbjct: 412 GRFGGPASLEEFTEWQWI 429
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 422 bits (1088), Expect = e-144
Identities = 181/461 (39%), Positives = 272/461 (59%), Gaps = 12/461 (2%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
+NPA E LA VP+ G +V A+ +AKEAF WS+ +P ER +L + +E
Sbjct: 1 NFNPATGEVLAKVPEGGAAEVDAAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADE 60
Query: 107 LAEIMTQESGKPPTESLGEVV--YANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPL 164
LA + + ++GKP T + + A +F +F++ + GE P + ++R+P+
Sbjct: 61 LALLESLDTGKPITLARTRDIPRAAANF-RFFADYILQLDGESYPQDGGALNY-VLRQPV 118
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLN 224
GV GLITPWN P+ ++T K+APALA G T V+KP+E TPLTA LA LA+EA +P GV+N
Sbjct: 119 GVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVN 178
Query: 225 VVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIV 284
VV A G L P V ISFTG T G+ + + +K +SLELGG P IV
Sbjct: 179 VVHGFGPEA---GAALVAHPDVDLISFTGETATGRTIMRAAAPNLKPVSLELGGKNPNIV 235
Query: 285 YSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK 344
+++A+L +AV A+ + F N G+ C+A +R L+Q ++D+F+E VE K+ GD
Sbjct: 236 FADADLDRAVDAAVRSSFSNNGEVCLAGSRILVQRSIYDEFLERF-VERAKALKVGDPLD 294
Query: 345 NDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK---FFAPTILTNITP 401
D +GPLI+ +EKV V+ A ++GA ++ GGG+ + F PT++T +
Sbjct: 295 PDT-EVGPLISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLDN 353
Query: 402 DMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMV 461
D EE+FGPV I F EEE++ +AN++ GLA Y +T D+ +A RV ++L+ G V
Sbjct: 354 DSRVAQEEIFGPVVTVIPFDDEEEAIELANDTPYGLAAYVWTRDLGRAHRVARRLEAGTV 413
Query: 462 GINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
+N ++ FGGVK SG+GREG + +E +T++K +C
Sbjct: 414 WVNCWLVRDLRTPFGGVKASGIGREGGDYSLEFYTELKNVC 454
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 418 bits (1076), Expect = e-143
Identities = 174/467 (37%), Positives = 258/467 (55%), Gaps = 26/467 (5%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWS-QTTPKERGIVLKRWLKELEGNKQ 105
V NPA +E + PD G DV AI +A+ AF+ T +ER L++ + LE K+
Sbjct: 1 VINPATEEVIGTAPDAGAADVDAAIAAARRAFDTGDWSTDAEERARCLRQLHEALEARKE 60
Query: 106 ALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPS-------PVKSKEL- 157
L ++ E G P V+ A + R + +L S PV +
Sbjct: 61 ELRALLVAEVGAP-------VMTARAMQVDGPIGHLRYFADLADSFPWEFDLPVPALRGG 113
Query: 158 ----LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALA 213
++ REP+GVV ITPWNFP + K+APALAAG T V+KPA DTPL+AL L +
Sbjct: 114 PGRRVVRREPVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEII 173
Query: 214 HEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLS 273
E +P GV+NVVT S N+VG+ L T P V +SFTGST VG+ + + + +KR+
Sbjct: 174 AETDLPAGVVNVVTGS---DNAVGEALTTDPRVDMVSFTGSTAVGRRIMAQAAATLKRVL 230
Query: 274 LELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEI 333
LELGG + IV +A+L A A+ N GQ C R L+ +D+ VE L
Sbjct: 231 LELGGKSANIVLDDADLAAAAPAAVGVCMHNAGQGCALTTRLLVPRSRYDEVVEALA-AA 289
Query: 334 TKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFF-A 392
++ GD + +GPLI+ AQ ++V+ + +GA+++ GGG+ L F+
Sbjct: 290 FEALPVGDPADPGT-VMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVE 348
Query: 393 PTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRV 452
PT+ ++ DM EE+FGPV V I + ++E++ +AN+S+ GL+G ++ D+ +A+RV
Sbjct: 349 PTLFADVDNDMRIAQEEIFGPVLVVIPYDDDDEAVRIANDSDYGLSGGVWSADVDRAYRV 408
Query: 453 GKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
++++ G VGIN G +A FGG K+SGLGRE G+EEF + K
Sbjct: 409 ARRIRTGSVGINGGGGYGPDAPFGGYKQSGLGRENGIEGLEEFLETK 455
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 415 bits (1069), Expect = e-141
Identities = 187/476 (39%), Positives = 273/476 (57%), Gaps = 17/476 (3%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQTTPKE 88
YI+GEWV S K + NPAN E +A VP+ ED + AI +A+ AF+ W +E
Sbjct: 1 YIDGEWVEAASGKTRDIINPANGEVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQE 60
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV 148
R +L R ++ + + LA + T +GK ES ++ + +++ A + GE+
Sbjct: 61 RAALLFRIADKIREDAEELARLETLNTGKTLRESEIDIDDVANCFRYYAGLATKETGEVY 120
Query: 149 PSP--VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA 206
P V S+ VREP+GV GLITPWN+P+ K+APALAAG T VIKP+E TPLT
Sbjct: 121 DVPPHVISR---TVREPVGVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTT 177
Query: 207 LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS 266
+AL L EA +P GV+N+VT S +VG L SP V +SFTG T G+ + +
Sbjct: 178 IALFELIEEAGLPAGVVNLVTGS---GATVGAELAESPDVDLVSFTGGTATGRSIMRAAA 234
Query: 267 QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFV 326
+K+++LELGG P IV+++A+ + AV A+ F N GQ C A +R L++E + D+FV
Sbjct: 235 GNVKKVALELGGKNPNIVFADADFETAVDQALNGVFFNAGQVCSAGSRLLVEESIHDKFV 294
Query: 327 EMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKL 386
L E K G+ D +GPL++ EKV S +Q +GA+++ GG + T
Sbjct: 295 AAL-AERAKKIKLGNGLDADT-EMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGD 352
Query: 387 GSK---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT 443
F PTI ++ M EE+FGPV +F TEEE++ +AN++ GLAG +T
Sbjct: 353 ELAKGYFVEPTIFDDVDRTMRIVQEEIFGPVLTVERFDTEEEAIRLANDTPYGLAGAVWT 412
Query: 444 NDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
DI++A RV ++L+ G V IN+ EA +GG K+SG+GRE G+EE+ + K
Sbjct: 413 KDIARANRVARRLRAGTVWINDYHPYFAEAPWGGYKQSGIGRELGPTGLEEYQETK 468
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 412 bits (1061), Expect = e-140
Identities = 184/467 (39%), Positives = 276/467 (59%), Gaps = 20/467 (4%)
Query: 43 KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFE--QWSQTTPKERGIVLKRWLKEL 100
+ F NPA LA+V DV A+ +A+ AFE WS+ +P ER VL R +
Sbjct: 2 ETFATINPATGRVLAEVAACDAADVDRAVAAARRAFESGVWSRLSPAERKAVLLRLADLI 61
Query: 101 EGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEARRTYGELVPSPVKSKEL-L 158
E ++ LA + T + GKP +++L +V A + W++E + YGE+ P+ L L
Sbjct: 62 EAHRDELALLETLDMGKPISDALAVDVPSAANTFRWYAEAIDKVYGEVAPTG--PDALAL 119
Query: 159 MVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQI 218
+ REPLGVVG + PWNFP+ M K+APALAAG + V+KPAE +PLTAL LA LA EA +
Sbjct: 120 ITREPLGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEAGL 179
Query: 219 PKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG-IKRLSLELG 277
P GVLNVV ++ G+ L V ++FTGST+VG+ + Q +KR+ LE G
Sbjct: 180 PAGVLNVVPGF---GHTAGEALGLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECG 236
Query: 278 GNAPFIVYSNA-NLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKS 336
G +P IV+++A +L A A A F N G+ C A +R L+ E + D+F+E + V +
Sbjct: 237 GKSPNIVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKV-VAAARE 295
Query: 337 FIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFA-PTI 395
+ GD + +G L++ A +KV ++ ++GA+++ GG +V FF PT+
Sbjct: 296 WKPGD-PLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTV 354
Query: 396 LTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKK 455
+TPDM EE+FGPV I F +EEE++ +AN+S GLA +T+D+S+A RV ++
Sbjct: 355 FDGVTPDMRIAREEIFGPVLSVITFDSEEEAVALANDSVYGLAASVWTSDLSRAHRVARR 414
Query: 456 LQVGMVGIN---EGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
L+ G V +N EG I+ FGG K+SG GR+ S H ++++T++K
Sbjct: 415 LRAGTVWVNCFDEGDIT---TPFGGFKQSGNGRDKSLHALDKYTELK 458
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 409 bits (1053), Expect = e-139
Identities = 181/458 (39%), Positives = 267/458 (58%), Gaps = 12/458 (2%)
Query: 45 FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNK 104
F NPA+ A V +D + AI +A +AF W+ TTP ER +L + + +E
Sbjct: 1 FDDLNPADGSVYARVAVGSRQDAERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRA 60
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPL 164
L +++ E G ++ E + + + E RR GE +PS + VR PL
Sbjct: 61 DDLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGECRRVRGETLPSDSPGTVSMSVRRPL 120
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLN 224
GVV ITP+N+P+ + T+KVA ALAAG T V+KP+E+TP+ L +A + EA +PKGV N
Sbjct: 121 GVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFN 180
Query: 225 VVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIV 284
VVT VG L P V ++FTGST VG+ + + +K+++LELGG P IV
Sbjct: 181 VVTGGGA---EVGDELVDDPRVRMVTFTGSTAVGREIAEKAGRHLKKITLELGGKNPLIV 237
Query: 285 YSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK 344
++A+L AV A F + GQ C++A+R +++E V+D+FV+ V GD
Sbjct: 238 LADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYDEFVKKF-VARASKLKVGDPR- 295
Query: 345 NDKCN-LGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDM 403
D +GPLI+ QVE++ V+DA++KGAK++ GG K F+ PT+LT++TPDM
Sbjct: 296 -DPDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGG----KYDGNFYQPTVLTDVTPDM 350
Query: 404 LCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGI 463
+ EE FGPV I K EE+L +AN++ GL+ TND+ +A+++ ++L+ GMV I
Sbjct: 351 RIFREETFGPVTSVIPAKDAEEALELANDTEYGLSAAILTNDLQRAFKLAERLESGMVHI 410
Query: 464 NEG-IISHTEAAFGGVKESGLGREGSRHGMEEFTQIKY 500
N+ I+ FGGVK SG GREG MEEFT++K+
Sbjct: 411 NDPTILDEAHVPFGGVKASGFGREGGEWSMEEFTELKW 448
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 405 bits (1043), Expect = e-138
Identities = 189/461 (40%), Positives = 280/461 (60%), Gaps = 13/461 (2%)
Query: 45 FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNK 104
V NPAN E + VP + E+V+ AI A++A + S +R +L + + +E K
Sbjct: 1 IEVRNPANGEVIDTVPSLSREEVREAIEVAEKAKDVMSNLPAYKRYKILMKVAELIERRK 60
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPS---PVKSKELLM-V 160
+ LA+++T E GKP +S EV +EEA+ GE +P + + V
Sbjct: 61 EELAKLLTIEVGKPIKQSRVEVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTV 120
Query: 161 REPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPK 220
REP+GVVG ITP+NFP + K+APA+A G + V+KP+ +TPLTA+ LA + EA +P
Sbjct: 121 REPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGLPP 180
Query: 221 GVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNA 280
GV+NVVT + VG + T+P V ISFTGST VG ++ S K+++LELGG+
Sbjct: 181 GVINVVTG---YGSEVGDEIVTNPKVNMISFTGSTAVGLLIASKAGGTGKKVALELGGSD 237
Query: 281 PFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQG 340
P IV +A+L++AVS A+ +F N GQ C A R L++E+V+D+F+++L VE K G
Sbjct: 238 PMIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVYDKFLKLL-VEKVKKLKVG 296
Query: 341 DTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNIT 400
D ++ +LGPLI+ VE+++++V DA+ KG K++ GG + FF PT+L N T
Sbjct: 297 D-PLDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGGKRD---EGSFFPPTVLENDT 352
Query: 401 PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGM 460
PDM+ EEVFGPV K K +EE++ +AN++ GL FTNDI++A +V ++L+ G
Sbjct: 353 PDMIVMKEEVFGPVLPIAKVKDDEEAVEIANSTEYGLQASVFTNDINRALKVARELEAGG 412
Query: 461 VGINEGIISHTEA-AFGGVKESGLGREGSRHGMEEFTQIKY 500
V IN+ + FGG K+SG+GREG R+ M E T+ K
Sbjct: 413 VVINDSTRFRWDNLPFGGFKKSGIGREGVRYTMLEMTEEKT 453
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 402 bits (1037), Expect = e-137
Identities = 166/436 (38%), Positives = 249/436 (57%), Gaps = 14/436 (3%)
Query: 67 VQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEV 126
++ A+ A AF W +T+ ER +L++ L K LA ++T E GKP E+ EV
Sbjct: 1 IEAALDRAHAAFLAWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARAEV 60
Query: 127 VYANSFVDWFSEEARRTYGELVPSPVKS--KELLMVREPLGVVGLITPWNFPMAMITRKV 184
+++E A L P+++ + + EPLGVV I PWNFP + R
Sbjct: 61 EKCAWICRYYAENAEA---FLADEPIETDAGKAYVRYEPLGVVLGIMPWNFPFWQVFRFA 117
Query: 185 APALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL-NVVTSSRTNANSVGKLLCTS 243
AP L AG T ++K A + P ALA+ L EA P+GV N++ S V ++
Sbjct: 118 APNLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDSDQ----VEAII-AD 172
Query: 244 PHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFR 303
P V G++ TGS + G+ + + + +K+ LELGG+ PFIV +A+L KAV A+ + +
Sbjct: 173 PRVRGVTLTGSERAGRAVAAEAGKNLKKSVLELGGSDPFIVLDDADLDKAVKTAVKGRLQ 232
Query: 304 NCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVD 363
N GQ+C+AA RF++ E V+D+F+E + + GD ++ +LGPL +++
Sbjct: 233 NAGQSCIAAKRFIVHEDVYDEFLEKFVEAMAALKV-GDPM-DEDTDLGPLARKDLRDELH 290
Query: 364 SIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE 423
V++A++ GA ++LGG + G+ F+ PT+LT++TP M Y EE+FGPVA IK K E
Sbjct: 291 EQVEEAVAAGATLLLGGKRPDGPGA-FYPPTVLTDVTPGMPAYDEELFGPVAAVIKVKDE 349
Query: 424 EESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGL 483
EE++ +AN+S GL G FT D+ +A RV ++L+ GMV IN + S FGGVK SG
Sbjct: 350 EEAIALANDSPFGLGGSVFTTDLERAERVARRLEAGMVFINGMVKSDPRLPFGGVKRSGY 409
Query: 484 GREGSRHGMEEFTQIK 499
GRE R G+ EF IK
Sbjct: 410 GRELGRFGIREFVNIK 425
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 404 bits (1041), Expect = e-137
Identities = 189/478 (39%), Positives = 279/478 (58%), Gaps = 15/478 (3%)
Query: 33 YINGEWV--HSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKER 89
YI GEWV S + F NPA+ +E + P DV A+ +A+EAF +W + R
Sbjct: 2 YIGGEWVDSASGETFDSRNPADLEEVVGTFPLSTASDVDAAVEAAREAFPEWRKVPAPRR 61
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP 149
L R + L+ K+ LA ++T+E GKP E G+V A + + E RR +GE VP
Sbjct: 62 AEYLFRAAELLKKRKEELARLVTREMGKPLAEGRGDVQEAIDMAQYAAGEGRRLFGETVP 121
Query: 150 SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALAL 209
S + +K+ + R+P+GVV LITPWNFP+A+ + K+ PAL G T V KPAEDTP AL L
Sbjct: 122 SELPNKDAMTRRQPIGVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPAEDTPACALKL 181
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
L EA +P GV+NVV VG+ L P V +SFTGST+VG+ + C++
Sbjct: 182 VELFAEAGLPPGVVNVVHGR---GEEVGEALVEHPDVDVVSFTGSTEVGERIGETCARPN 238
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
KR++LE+GG P IV +A+L A+ GA+ + F GQ C A +R ++ E V+D+F++
Sbjct: 239 KRVALEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVYDEFLKRF 298
Query: 330 KVEITKSFIQGDTSKNDKCNL-GPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGS 388
VE K GD D+ GPLIN AQ+EKV + + +GA ++LGG ++T G
Sbjct: 299 -VERAKRLRVGD--GLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGY 355
Query: 389 K---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
+ F PT+ T++TPDM EE+FGPV I+ + EE++ +AN++ GL+ +T D
Sbjct: 356 EKGYFVEPTVFTDVTPDMRIAQEEIFGPVVALIEVSSLEEAIEIANDTEYGLSSAIYTED 415
Query: 446 ISQAWRVGKKLQVGMVGINEGII-SHTEAAFGGVKESGLG-REGSRHGMEEFTQIKYM 501
+++A+R + L+ G+ +N I + FGGVK+SG G RE ++ FT+ K +
Sbjct: 416 VNKAFRARRDLEAGITYVNAPTIGAEVHLPFGGVKKSGNGHREAGTTALDAFTEWKAV 473
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 401 bits (1034), Expect = e-136
Identities = 185/464 (39%), Positives = 277/464 (59%), Gaps = 16/464 (3%)
Query: 45 FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNK 104
V +P + E + VP EDV+ AI +AKE ++ ER +L+R + LE +
Sbjct: 1 IEVISPYDGEVIGRVPVASEEDVEKAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERR 60
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP---SP-VKSKELLMV 160
+ A + E+GKP ++ EV A + +EEA+R GE +P SP + + +
Sbjct: 61 EEFARTIALEAGKPIKDARKEVDRAIETLRLSAEEAKRLAGETIPFDASPGGEGRIGFTI 120
Query: 161 REPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPK 220
REP+GVV ITP+NFP+ ++ KV PA+AAG V+KPA TPL+AL LA L EA +PK
Sbjct: 121 REPIGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGLPK 180
Query: 221 GVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNA 280
G LNVVT S +VG L T P V ISFTGS VG+ + G+K+++LELG NA
Sbjct: 181 GALNVVTGS---GETVGDALVTDPRVRMISFTGSPAVGEAIAR--KAGLKKVTLELGSNA 235
Query: 281 PFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQG 340
IV ++A+L+KAV ++ F N GQ C++ R + E ++D+F+E V TK + G
Sbjct: 236 AVIVDADADLEKAVERCVSGAFANAGQVCISVQRIFVHEDIYDEFLERF-VAATKKLVVG 294
Query: 341 DTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNIT 400
D ++ ++GP+I+ A+ E+++ V++A+ GA+++ GG + G+ PT+LT++
Sbjct: 295 DPL-DEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGG---KRDGA-ILEPTVLTDVP 349
Query: 401 PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGM 460
PDM EEVF PV F T +E++ +AN+S GL FTND+ +A + ++L+VG
Sbjct: 350 PDMKVVCEEVFAPVVSLNPFDTLDEAIAMANDSPYGLQAGVFTNDLQKALKAARELEVGG 409
Query: 461 VGINEGIISHTEA-AFGGVKESGLGREGSRHGMEEFTQIKYMCF 503
V IN+ + +GGVKESG GREG R+ +EE T+IK +CF
Sbjct: 410 VMINDSSTFRVDHMPYGGVKESGTGREGPRYAIEEMTEIKLVCF 453
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 400 bits (1031), Expect = e-136
Identities = 180/474 (37%), Positives = 268/474 (56%), Gaps = 15/474 (3%)
Query: 33 YINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
YI+GEWV NP++ + + ED AI +A AF W +T+P+ R
Sbjct: 4 YIDGEWVAGGDGEENRNPSDTSDVVGKYARASAEDADAAIAAAAAAFPAWRRTSPEARAD 63
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP 151
+L + ELE K+ LA ++T+E GK E+ GEV A +++ EA R GE +PS
Sbjct: 64 ILDKAGDELEARKEELARLLTREEGKTLPEARGEVTRAGQIFRYYAGEALRLSGETLPST 123
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAA 211
E+ REPLGVVGLITPWNFP+A+ K+APALA G T V KPAE TP +A AL
Sbjct: 124 RPGVEVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTPASAWALVE 183
Query: 212 LAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKR 271
+ EA +P GV N+V S + VG+ L P V +SFTGST VG+ + + + R
Sbjct: 184 ILEEAGLPAGVFNLVMGS---GSEVGQALVEHPDVDAVSFTGSTAVGRRIAAAAAARGAR 240
Query: 272 LSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKV 331
+ LE+GG P +V +A+L AV A+ F + GQ C A++R ++ E + D+FVE L V
Sbjct: 241 VQLEMGGKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLIVTEGIHDRFVEAL-V 299
Query: 332 EITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK-- 389
E TK+ GD + ++ ++GP+++ Q+EK ++ A S+GAK++ GG ++ K +
Sbjct: 300 ERTKALKVGD-ALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERL-KRPDEGY 357
Query: 390 FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQA 449
+ AP + +T DM EE+FGPVA I+ + +E+L +AN++ GL+ T + A
Sbjct: 358 YLAPALFAGVTNDMRIAREEIFGPVAAVIRVRDYDEALAIANDTEFGLSAGIVTTSLKHA 417
Query: 450 WRVGKKLQVGMVGINE---GIISHTEAAFGGVKESGLG-REGSRHGMEEFTQIK 499
++++ G+V +N G+ H FGG K S G RE +E +T IK
Sbjct: 418 THFKRRVEAGVVMVNLPTAGVDYH--VPFGGRKGSSYGPREQGEAALEFYTTIK 469
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 397 bits (1022), Expect = e-135
Identities = 177/458 (38%), Positives = 263/458 (57%), Gaps = 11/458 (2%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V NPA + + ++P EDV A+ +A+ AF +W +TT ER L+ + + ++
Sbjct: 1 VINPATEATIGEIPAATAEDVDAAVRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREE 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA---RRTYGELVPSPVKSKELLMVREP 163
LAE+ +++GKP E+ +V +++++ A VP P + + + REP
Sbjct: 61 LAELEARDNGKPLDEAAWDVDDVAGCFEYYADLAEQLDAKAERAVPLPSEDFKARVRREP 120
Query: 164 LGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL 223
+GVVGLITPWNFP+ M KVAPALAAGCT V+KP+E T LT L LA +A EA +P GVL
Sbjct: 121 VGVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPPGVL 180
Query: 224 NVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFI 283
NVVT + + G L P + ISFTGST G + +Q IK +SLELGG +P I
Sbjct: 181 NVVTGT---GDEAGAPLAAHPGIDKISFTGSTATGSQVMQAAAQDIKPVSLELGGKSPII 237
Query: 284 VYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTS 343
V+ +A+L+KAV AM F N GQ C A +R L+ E + D F+E L +
Sbjct: 238 VFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVHESIADAFLERLATAAEAIRVGDPLE 297
Query: 344 KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFF-APTILTNITPD 402
+ LGPL++ AQ EKV S + +GA+++ GG + L +F APT+ ++ D
Sbjct: 298 EG--VRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFADVPTD 355
Query: 403 MLCYTEEVFGPVAVCIK-FKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMV 461
+ EE+FGPV +C++ F TE+E++ +AN+S GLA + D + RV + L+ G+V
Sbjct: 356 SRIWREEIFGPV-LCVRSFATEDEAIALANDSEYGLAAAVISRDAERCDRVAEALEAGIV 414
Query: 462 GINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
IN +A +GG K SG+GRE G++ + ++K
Sbjct: 415 WINCSQPCFPQAPWGGYKRSGIGRELGEWGLDNYLEVK 452
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 388 bits (1000), Expect = e-131
Identities = 167/453 (36%), Positives = 240/453 (52%), Gaps = 11/453 (2%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V NPA E A P + A+ +AK AF WS T +ER L +E N +
Sbjct: 1 VINPATGEVFASAPVASEAQLDQAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEE 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGV 166
LA ++T E GKP E+ EV A V W A + V ++ + + R+PLGV
Sbjct: 61 LARLLTLEQGKPLAEAQFEVGGA---VAWLRYTASLDLPDEVIEDDDTRRVELRRKPLGV 117
Query: 167 VGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVV 226
V I PWNFP+ + K+APAL AG T V+KP+ TPL L L LA E +P GVLNVV
Sbjct: 118 VAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPLCTLKLGELAQEV-LPPGVLNVV 176
Query: 227 TSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYS 286
+ + +G L + P + ISFTGST GK + + ++ +KR++LELGGN IV
Sbjct: 177 SGG----DELGPALTSHPDIRKISFTGSTATGKKVMASAAKTLKRVTLELGGNDAAIVLP 232
Query: 287 NANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKND 346
+ ++ F N GQ C A R + E ++D+F E L V + K+ + GD +
Sbjct: 233 DVDIDAVAPKLFWGAFINSGQVCAAIKRLYVHESIYDEFCEAL-VALAKAAVVGDGL-DP 290
Query: 347 KCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCY 406
LGP+ N Q +KV +V+DA +KGAKV+ GG+ F PTI+ +
Sbjct: 291 GTTLGPVQNKMQYDKVKELVEDAKAKGAKVLA-GGEPLDGPGYFIPPTIVDDPPEGSRIV 349
Query: 407 TEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEG 466
EE FGPV +K+ E+E + AN+S GL +++D+ +A V ++L+ G V IN
Sbjct: 350 DEEQFGPVLPVLKYSDEDEVIARANDSEYGLGASVWSSDLERAEAVARRLEAGTVWINTH 409
Query: 467 IISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+A FGG K+SG+G E G++E+TQ +
Sbjct: 410 GALDPDAPFGGHKQSGIGVEFGIEGLKEYTQTQ 442
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 389 bits (1001), Expect = e-131
Identities = 188/487 (38%), Positives = 276/487 (56%), Gaps = 17/487 (3%)
Query: 19 KYLQKLCLSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKE 76
Y Q L +IN E+V SS + NP+ E +A V G EDV A+ +A++
Sbjct: 3 SYDQPTGL------FINNEFVKSSDGETIKTVNPSTGEVIASVYAAGEEDVDKAVKAARK 56
Query: 77 AFEQ-WSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKP-PTESLGEVVYANSFVD 134
AFE WS+ T +ERG +L + +E N+ LA I +SGKP + +LG++ + +
Sbjct: 57 AFESWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIR 116
Query: 135 WFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTC 194
+++ A + G+ +P+ K + EP GV G I PWN+P+AM K+APALAAG T
Sbjct: 117 YYAGWADKIQGKTIPTSPN-KLAYTLHEPYGVCGQIIPWNYPLAMAAWKLAPALAAGNTV 175
Query: 195 VIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGS 254
VIKPAE+TPL+ L A L EA P GV+N++ G L P V I+FTGS
Sbjct: 176 VIKPAENTPLSLLYFANLVKEAGFPPGVVNIIPGYGA---VAGSALAEHPDVDKIAFTGS 232
Query: 255 TQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANR 314
T G+++ +Q +K ++LE GG +P +V+ +A+L +AV A A N GQ C A +R
Sbjct: 233 TATGRLVMKAAAQNLKAVTLECGGKSPALVFEDADLDQAVKWAAAGIMYNSGQNCTATSR 292
Query: 315 FLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGA 374
+QE ++D+FVE + +++ G +D +GP ++ Q ++V S ++ +GA
Sbjct: 293 IYVQESIYDKFVEKFVEHVKQNYKVGSPF-DDDTVVGPQVSKTQYDRVLSYIEKGKKEGA 351
Query: 375 KVILGGGKVTKLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANN 432
K++ GG K + K F PTI T++ DM EE+FGPV V KFKT EE++ AN+
Sbjct: 352 KLVYGGEKAPEGLGKGYFIPPTIFTDVPQDMRIVKEEIFGPVVVISKFKTYEEAIKKAND 411
Query: 433 SNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGM 492
+ GLA FT DI +A RV ++L+ GMV IN S FGG K SG+GRE +G+
Sbjct: 412 TTYGLAAAVFTKDIRRAHRVARELEAGMVWINSSNDSDVGVPFGGFKMSGIGRELGEYGL 471
Query: 493 EEFTQIK 499
E +TQ K
Sbjct: 472 ETYTQTK 478
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 386 bits (995), Expect = e-130
Identities = 171/461 (37%), Positives = 261/461 (56%), Gaps = 19/461 (4%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ-WSQTTPKERGIVLKRWLKELEGNKQ 105
V++P+ E A + G DV A+ +A+ AFE W + +P ERG +L R + + +
Sbjct: 1 VFDPSTGEVFARIARGGAADVDRAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHAD 60
Query: 106 ALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLG 165
LA + + ++GKP T++ +V A + +++ A + +GE +P + VREP G
Sbjct: 61 ELARLESLDTGKPLTQARADVEAAARYFEYYGGAADKLHGETIP-LGPGYFVYTVREPHG 119
Query: 166 VVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNV 225
V G I PWN+P+ + R VAPALAAG V+KPAED PLTAL LA LA EA +P G LNV
Sbjct: 120 VTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALNV 179
Query: 226 VTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVY 285
VT A G L P V ISFTGS + G + ++ + ++LELGG +P IV+
Sbjct: 180 VTGLGAEA---GAALVAHPGVDHISFTGSVETGIAVMRAAAENVVPVTLELGGKSPQIVF 236
Query: 286 SNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKN 345
++A+L+ A+ + A +N GQ C A +R L+ ++D+ +E L VE ++ G ++
Sbjct: 237 ADADLEAALPVVVNAIIQNAGQTCSAGSRLLVHRSIYDEVLERL-VERFRALRVGPGLED 295
Query: 346 DKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK--FFAPTILTNITPDM 403
+LGPLI+ Q+++V+ V A ++GA+++ GG + F APT+L ++ PD
Sbjct: 296 P--DLGPLISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPPDS 353
Query: 404 LCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGI 463
EE+FGPV + F E E++ +AN ++ GL +T D +A RV ++L+ G V +
Sbjct: 354 RLAQEEIFGPVLAVMPFDDEAEAIALANGTDYGLVAGVWTRDGDRALRVARRLRAGQVFV 413
Query: 464 NE-----GIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
N GI E FGGVK+SG GRE + +TQ K
Sbjct: 414 NNYGAGGGI----ELPFGGVKKSGHGREKGLEALYNYTQTK 450
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 387 bits (997), Expect = e-130
Identities = 171/474 (36%), Positives = 262/474 (55%), Gaps = 15/474 (3%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQTTPKE 88
+I G WV S+ V +PA +E + VP+ DV A+ +A+ AF+ W + +P E
Sbjct: 2 FIGGRWVAPSGSETIDVVSPATEEVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPAE 61
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTES-LGEVVYANSFVDWFSEEARR-TYGE 146
R VL+R LE LA + T E+G P + S + + + +++ AR + E
Sbjct: 62 RAAVLRRLADALEARADELARLWTAENGMPISWSRRAQGPGPAALLRYYAALARDFPFEE 121
Query: 147 LVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA 206
P L+ REP+GVV I PWN P+ + K+APALAAGCT V+KP+ +TPL A
Sbjct: 122 RRPGSGGGHVLV-RREPVGVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDA 180
Query: 207 LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS 266
LA A EA +P GV+NVV + R VG+ L P V +SFTGST G+ + + C
Sbjct: 181 YLLAEAAEEAGLPPGVVNVVPADR----EVGEYLVRHPGVDKVSFTGSTAAGRRIAAVCG 236
Query: 267 QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFV 326
+ + R++LELGG + IV +A+L AV G + A N GQ CVA R L+ +D+ V
Sbjct: 237 ERLARVTLELGGKSAAIVLDDADLDAAVPGLVPASLMNNGQVCVALTRILVPRSRYDEVV 296
Query: 327 EMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKL 386
E L + GD + +GPL + Q E+V+ + ++GA+++ GGG+ L
Sbjct: 297 EAL-AAAVAALKVGDPL-DPATQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGL 354
Query: 387 GSKFF-APTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
+F PT+ ++ DM EE+FGPV I + E++++ +AN+S+ GL+G +T D
Sbjct: 355 DRGWFVEPTLFADVDNDMRIAQEEIFGPVLSVIPYDDEDDAVRIANDSDYGLSGSVWTAD 414
Query: 446 ISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+ + V ++++ G VG+N G A FGG K+SG+GREG G++ + + K
Sbjct: 415 VERGLAVARRIRTGTVGVN-GFRLDFGAPFGGFKQSGIGREGGPEGLDAYLETK 467
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 383 bits (985), Expect = e-129
Identities = 167/452 (36%), Positives = 270/452 (59%), Gaps = 7/452 (1%)
Query: 50 PANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQTTPKERGIVLKRWLKELEGNKQAL 107
PA+ +A + VEDV A+ +A++AF++ W + + ER VL + + ++ L
Sbjct: 4 PAHGVVVARYAEGTVEDVDAAVAAARKAFDKGPWPRMSGAERAAVLLKVADLIRARRERL 63
Query: 108 AEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVV 167
A I T ESGKP +++ GE+ A + + AR +G+ + L++REP+GVV
Sbjct: 64 ALIETLESGKPISQARGEIEGAADLWRYAASLARTLHGDSYNNLGDDMLGLVLREPIGVV 123
Query: 168 GLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVT 227
G+ITPWNFP ++++K+ ALAAGCT V+KP+E T T L LA L EA +P GV+N+VT
Sbjct: 124 GIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVNIVT 183
Query: 228 SSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSN 287
+VG+ + P V +SFTGST+VGK + + ++ +K++SLELGG P IV+++
Sbjct: 184 GYGA---TVGQAMTEHPDVDMVSFTGSTRVGKAIAAAAARNLKKVSLELGGKNPQIVFAD 240
Query: 288 ANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDK 347
A+L A + + N G+ C + +R L+ E + D FV + V ++ GD + +
Sbjct: 241 ADLDAAADAVVFGVYFNAGECCNSGSRLLVHESIADAFVAAV-VARSRKVRVGD-PLDPE 298
Query: 348 CNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYT 407
+G +IN AQ+ K+ V ++GA ++LGG ++ F+ PTI T++TPDM
Sbjct: 299 TKVGAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDMAIAR 358
Query: 408 EEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGI 467
EE+FGPV + F T +E++ +AN++ GL+ ++ DI A V ++++ G V +N +
Sbjct: 359 EEIFGPVLSVLTFDTVDEAIALANDTVYGLSAGVWSKDIDTALTVARRIRAGTVWVNTFL 418
Query: 468 ISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
E FGG K+SG+GRE R+G+EE+T++K
Sbjct: 419 DGSPELPFGGFKQSGIGRELGRYGVEEYTELK 450
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 383 bits (986), Expect = e-129
Identities = 179/479 (37%), Positives = 254/479 (53%), Gaps = 22/479 (4%)
Query: 30 TQAYINGEWVHSS-KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKE 88
T+ INGE V +K PVYNPA E LA++ + V A+ +A AF +WSQTTPKE
Sbjct: 3 TKLLINGELVAGEGEKQPVYNPATGEVLAEIAEASAAQVDAAVAAADAAFPEWSQTTPKE 62
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFV-DWFSEEAR----RT 143
R L + +E N A + + GKP +L + + A V +F+ AR +
Sbjct: 63 RAEALLKLADAIEENADEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAGAARCLEGKA 122
Query: 144 YGELVP---SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
GE + S ++ R+P+GVV I PWN+P+ M K+APALAAG T V+KP+E
Sbjct: 123 AGEYLEGHTSMIR-------RDPVGVVASIAPWNYPLMMAAWKLAPALAAGNTVVLKPSE 175
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI 260
TPLTAL LA LA + +P GVLNVVT +VG L P V +S TGS GK
Sbjct: 176 ITPLTALKLAELAADI-LPPGVLNVVTGR---GATVGDALVGHPKVRMVSLTGSIATGKH 231
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ S + +KR LELGG AP IV+ +A+L V G + N GQ C AA R Q
Sbjct: 232 VLSAAADSVKRTHLELGGKAPVIVFDDADLDAVVEGIRTFGYYNAGQDCTAACRIYAQRG 291
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
++D V L + GD D LGPLI+ A ++V V+ A + G ++ G
Sbjct: 292 IYDDLVAKL-AAAVATLKVGDPDDEDT-ELGPLISAAHRDRVAGFVERAKALGHIRVVTG 349
Query: 381 GKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
G+ ++ PT+L D EVFGPV F E++++ AN+S+ GLA
Sbjct: 350 GEAPDGKGYYYEPTLLAGARQDDEIVQREVFGPVVSVTPFDDEDQAVRWANDSDYGLASS 409
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+T D+ +A RV +LQ G +N + +E GG K+SG G++ S +G+E++T ++
Sbjct: 410 VWTRDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKQSGYGKDMSLYGLEDYTVVR 468
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 378 bits (974), Expect = e-127
Identities = 186/460 (40%), Positives = 256/460 (55%), Gaps = 11/460 (2%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V PA E LA V G EDV A+ SAK A ++WS T+ ERG +L++ L
Sbjct: 1 VIEPATGEVLATVHCAGAEDVDLAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDE 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGV 166
+A + T ++GKP E+ ++ + +++++ A GE VP P S REPLGV
Sbjct: 61 IARLETIDNGKPIEEARVDIDSSADCLEYYAGLAPTLSGEHVPLPGGSFAYTR-REPLGV 119
Query: 167 VGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVV 226
I WN+P+ + + K APALA G V KP+ TPLTAL LA + EA +P GV NVV
Sbjct: 120 CAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGVFNVV 179
Query: 227 TSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYS 286
G+LLC P VA +SFTGS GK + S ++GIK ++LELGG +P I++
Sbjct: 180 QG----GGETGQLLCEHPDVAKVSFTGSVPTGKKVMSAAAKGIKHVTLELGGKSPLIIFD 235
Query: 287 NANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKND 346
+A+L+ AV+GAM A F + GQ C R +Q + D+F E L VE TK GD D
Sbjct: 236 DADLENAVNGAMMANFLSQGQVCSNGTRVFVQRSIKDEFTERL-VERTKKIRIGDPLDED 294
Query: 347 KCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKL----GSKFFAPTILTNITPD 402
+G LI+ +EKV ++ A +GAKV+ GG +V + +P +LT+ T D
Sbjct: 295 T-QMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFYVSPCVLTDCTDD 353
Query: 403 MLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVG 462
M EE+FGPV + F TEEE + AN++ GLA FT D+ +A RV +LQ G
Sbjct: 354 MTIVREEIFGPVMSILPFDTEEEVIRRANDTTYGLAAGVFTRDLQRAHRVIAQLQAGTCW 413
Query: 463 INEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
IN IS E FGG K+SG GRE +E +TQ+K +
Sbjct: 414 INTYNISPVEVPFGGYKQSGFGRENGTAALEHYTQLKTVY 453
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 376 bits (968), Expect = e-126
Identities = 165/461 (35%), Positives = 252/461 (54%), Gaps = 14/461 (3%)
Query: 48 YNPANDEHLADVPDMGVEDVQYAIMSAKEAFE--QWSQTTPKERGIVLKRWLKELEGNKQ 105
+PA E + D GV + + AI +A+ AF+ W+ P+ R VL E N +
Sbjct: 2 IDPATGEVIGTYADGGVAEAEAAIAAARRAFDETDWAHD-PRLRARVLLELADAFEANAE 60
Query: 106 ALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV-PSPVKSKELLMVREPL 164
LA ++ E+GK E+ E+ A S + +++ AR G ++ P P L++REP+
Sbjct: 61 RLARLLALENGKILGEARFEISGAISELRYYAGLARTEAGRMIEPEPGSFS--LVLREPM 118
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEA-QIPKGVL 223
GV G+I PWN P+ ++ R +APALAAGCT V+KPA T A+ + E +P GV+
Sbjct: 119 GVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPAGVV 178
Query: 224 NVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFI 283
N+ T S + L SP V ISFTGST G+ + + + +KRL LELGG P I
Sbjct: 179 NLFTESGS---EGAAHLVASPDVDVISFTGSTATGRAIMAAAAPTLKRLGLELGGKTPCI 235
Query: 284 VYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTS 343
V+ +A+L A+ A GQ C+A +R L+Q + D+ + L + G
Sbjct: 236 VFDDADLDAALPKLERALTIFAGQFCMAGSRVLVQRSIADEVRDRLA-ARLAAVKVGPGL 294
Query: 344 KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK--FFAPTILTNITP 401
++GPLI+ A V++VD +V+ AI+ GA+V+L GG VT+ +K F PT+L P
Sbjct: 295 DPAS-DMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLEVDDP 353
Query: 402 DMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMV 461
D EE+FGPV F E E++ +AN+++ GLA +T D+++A RV + ++ G V
Sbjct: 354 DADIVQEEIFGPVLTLETFDDEAEAVALANDTDYGLAASVWTRDLARAMRVARAIRAGTV 413
Query: 462 GINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
IN+ EA GG ++SGLGR +E+F + K++
Sbjct: 414 WINDWNKLFAEAEEGGYRQSGLGRLHGVAALEDFIEYKHIY 454
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 376 bits (966), Expect = e-126
Identities = 182/456 (39%), Positives = 258/456 (56%), Gaps = 10/456 (2%)
Query: 49 NPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALA 108
NPA E +A V EDV A+ +A+ AFE WS P ERG +L R + + N LA
Sbjct: 3 NPATGELIARVAQASAEDVDAAVAAARAAFEAWSAMDPAERGRILWRLAELILANADELA 62
Query: 109 EIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYGELVPSPVKSKEL-LMVREPLGV 166
+ + ++GKP + +V A +++ A + GE++P V+ L VREP+GV
Sbjct: 63 RLESLDTGKPIRAARRLDVPRAADTFRYYAGWADKIEGEVIP--VRGPFLNYTVREPVGV 120
Query: 167 VGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVV 226
VG I PWNFP+ KVAPALAAG T V+KPAE TPL+AL +A L EA P GVLNVV
Sbjct: 121 VGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFPAGVLNVV 180
Query: 227 TSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYS 286
T G L P V I+FTGST VG+ + + +KR+SLELGG + IV++
Sbjct: 181 TGF---GEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAAGNLKRVSLELGGKSANIVFA 237
Query: 287 NANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKND 346
+A+L AV A F N GQ C A +R L+ E ++D+F+E + +S GD +
Sbjct: 238 DADLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIYDEFLERF-TSLARSLRPGDPL-DP 295
Query: 347 KCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCY 406
K +GPL++ AQ ++V V +GA+++ GG + G F PTI + P+M
Sbjct: 296 KTQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGF-FVEPTIFAAVPPEMRIA 354
Query: 407 TEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEG 466
EE+FGPV ++F+ EEE+L +AN + GLA +T D+ +A RV L+ G V IN
Sbjct: 355 QEEIFGPVVSVMRFRDEEEALRIANGTEYGLAAGVWTRDLGRAHRVAAALKAGTVWINTY 414
Query: 467 IISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
+ FGG K+SG GRE R ++E+T++K +
Sbjct: 415 NRFDPGSPFGGYKQSGFGREMGREALDEYTEVKSVW 450
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 373 bits (959), Expect = e-125
Identities = 155/458 (33%), Positives = 243/458 (53%), Gaps = 13/458 (2%)
Query: 48 YNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQAL 107
NPA E L +VP +V A+ A+ A W+ + R L RW + L + L
Sbjct: 1 RNPATGEVLGEVPVTDPAEVAAAVARARAAQRAWAALGVEGRAQRLLRWKRALADHADEL 60
Query: 108 AEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRT--YGELVPSPV-KSKELLMVREPL 164
AE++ E+GKP ++ EV+ A +DW + A R ++ + +K+ + P
Sbjct: 61 AELLHAETGKPRADAGLEVLLALEAIDWAARNAPRVLAPRKVPTGLLMPNKKATVEYRPY 120
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLN 224
GVVG+I+PWN+P+ + PALAAG V+KP+E TPL LA A P+GVL
Sbjct: 121 GVVGVISPWNYPLLTPMGDIIPALAAGNAVVLKPSEVTPLVGELLAEAWAAAGPPQGVLQ 180
Query: 225 VVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIV 284
VVT G L + V ++FTGS G+ + + ++ + + LELGG P IV
Sbjct: 181 VVTGDGA----TGAALIDAG-VDKVAFTGSVATGRKVMAAAAERLIPVVLELGGKDPMIV 235
Query: 285 YSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK 344
++A+L++A + A+ N GQ C++ R + E V+D+FV L V ++ G
Sbjct: 236 LADADLERAAAAAVWGAMVNAGQTCISVERVYVHESVYDEFVARL-VAKARALRPGADDI 294
Query: 345 NDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDML 404
D ++GP+ Q++ V V DA++KGAK L GG + G F+ PT+LT++ DM
Sbjct: 295 GD-ADIGPMTTARQLDIVRRHVDDAVAKGAKA-LTGGARSNGGGPFYEPTVLTDVPHDMD 352
Query: 405 CYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGIN 464
EE FGPV + E+E++ +AN+S GL+ F+ D+++A + ++L+ G V IN
Sbjct: 353 VMREETFGPVLPVMPVADEDEAIALANDSRYGLSASVFSRDLARAEAIARRLEAGAVSIN 412
Query: 465 EGIISH--TEAAFGGVKESGLGREGSRHGMEEFTQIKY 500
+ +++ FGGVK+SG GR G+ EF + K
Sbjct: 413 DVLLTAGIPALPFGGVKDSGGGRRHGAEGLREFCRPKA 450
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 372 bits (957), Expect = e-124
Identities = 173/464 (37%), Positives = 247/464 (53%), Gaps = 17/464 (3%)
Query: 33 YINGEWVHS-SKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
I GEWV S + F NPAN E +A V EDV+ A+ +A+EAF++W + RG
Sbjct: 2 VIGGEWVGSGGETFTSRNPANGEPIARVFPASPEDVEAAVAAAREAFKEWRKVPAPRRGE 61
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP 151
++++ + L K+AL +++ E GK E LGEV D+ +R YG +PS
Sbjct: 62 IVRQIGEALRKKKEALGRLVSLEMGKILPEGLGEVQEMIDICDYAVGLSRMLYGLTIPSE 121
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAA 211
L+ PLGVVG+IT +NFP+A+ A AL G T V KP+E TPLTA+A+
Sbjct: 122 RPGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTPLTAIAVTK 181
Query: 212 LAHEA----QIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
+ E +P GV+N+VT G+LL P V +SFTGST+VG+ + ++
Sbjct: 182 ILAEVLEKNGLPPGVVNLVTGGGD----GGELLVHDPRVPLVSFTGSTEVGRRVGETVAR 237
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
R+ LELGGN IV +A+L AV + A GQ C R ++ E V+D+F+E
Sbjct: 238 RFGRVLLELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESVYDEFLE 297
Query: 328 MLKVEITKSFIQGDTSKNDKCNL-GPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKL 386
L V+ K GD D+ L GPLIN A VEK + ++ A S+G V+ GG ++
Sbjct: 298 RL-VKAYKQVRIGD--PLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGG 354
Query: 387 GSKFF-APTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
+ PTI+T +T D EE F P+ IKF + EE++ + N+ GL+ FT D
Sbjct: 355 EPGNYVEPTIVTGVTDDARIVQEETFAPILYVIKFDSLEEAIAINNDVPQGLSSSIFTED 414
Query: 446 ISQA--WRVGKKLQVGMVGINEGII-SHTEAAFGGVKESGLGRE 486
+ +A W K G+V +N + AFGG KE+G GRE
Sbjct: 415 LREAFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKETGGGRE 458
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 372 bits (956), Expect = e-124
Identities = 189/481 (39%), Positives = 282/481 (58%), Gaps = 18/481 (3%)
Query: 31 QAYINGEWVHSSKK--FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ-----WSQ 83
Q +I GEW PV NPA +E + D+P EDV A+ +A++AF++ W++
Sbjct: 9 QLFIGGEWREPVLGKRIPVVNPATEETIGDIPAATAEDVDAAVEAARKAFKRNKGKDWAR 68
Query: 84 TTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSE--EAR 141
TT R L+ ++ K LA++ T + GKP E+ ++ +++++ EA
Sbjct: 69 TTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEAAWDMDDVAGCFEYYADLAEAL 128
Query: 142 RTYGEL-VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
+ V P+++ + +++EPLGVVGLITPWN+P+ M T KVAPALAAGCT V+KP+E
Sbjct: 129 DAKQKAPVSLPMETFKGYVLKEPLGVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSE 188
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI 260
+T L LA + E +P GVLNVVT T A G L + P V I+FTGST G+
Sbjct: 189 LASVTCLELADICREVGLPPGVLNVVTGLGTEA---GAPLASHPGVDKIAFTGSTATGRK 245
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ + +Q +K +SLELGG +P IV+ + +L KAV AM F GQ C A +R L+ E+
Sbjct: 246 IMTAAAQMVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRLLVHER 305
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
+ +F+E L V+ K+ D + C LGP+++ Q EKV + A S+GA ++ GG
Sbjct: 306 IASEFLEKL-VKWAKNIKISDPLEEG-CRLGPVVSEGQYEKVLKFISTAKSEGATILCGG 363
Query: 381 GKVTKLGSKFF-APTILTNITPDMLCYTEEVFGPVAVCIK-FKTEEESLCVANNSNTGLA 438
+ L FF PTI+T++T M + EEVFGPV +C+K F TE+E++ +AN+S+ GLA
Sbjct: 364 KRPEHLKKGFFIEPTIITDVTTSMQIWREEVFGPV-LCVKTFSTEDEAIELANDSHYGLA 422
Query: 439 GYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQI 498
G +ND+ + RV + Q G+V IN +A +GG+K SG GRE G+E + +
Sbjct: 423 GAVISNDLERCERVSEAFQAGIVWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSV 482
Query: 499 K 499
K
Sbjct: 483 K 483
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 369 bits (948), Expect = e-123
Identities = 171/462 (37%), Positives = 261/462 (56%), Gaps = 16/462 (3%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V+NP + E + VP D + A+ +A+ E P ER +L+R L+ +
Sbjct: 3 VHNPYDGEVIGKVPADDRADAEEALATARAGAENRRALPPHERMAILERAADLLKKRAEE 62
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPV----KSKELLMVRE 162
A+I+ E GKP ++ EV A + +EEA R GE +P ++ +RE
Sbjct: 63 FAKIIACEGGKPIKDARVEVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTIRE 122
Query: 163 PLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGV 222
P+GVV ITP+NFP+ ++ K+APA+A GC V+KPA TPL+AL LA + EA +P+GV
Sbjct: 123 PVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGV 182
Query: 223 LNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPF 282
L VVT R +G VA +SFTGS VG+ L + + G KR++LELGGNAP
Sbjct: 183 LQVVTGER---EVLGDAFAADERVAMLSFTGSAAVGEALRA--NAGGKRIALELGGNAPV 237
Query: 283 IVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDT 342
IV +A+L A+ F + GQ C++ R + E+++D+F+E V K GD
Sbjct: 238 IVDRDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELYDEFIEAF-VAAVKKLKVGD- 295
Query: 343 SKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPD 402
++ ++GPLI+ E+V+ V++A+ GA+++ GG + F PT+L ++ D
Sbjct: 296 PLDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGG----ERDGALFKPTVLEDVPRD 351
Query: 403 MLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVG 462
TEE FGPV I++ EE++ +AN+++ GL FT D++ A++ +KL+VG V
Sbjct: 352 TKLSTEETFGPVVPIIRYDDFEEAIRIANSTDYGLQAGIFTRDLNVAFKAAEKLEVGGVM 411
Query: 463 INEGIISHTEA-AFGGVKESGLGREGSRHGMEEFTQIKYMCF 503
+N+ T+ FGGVKESG+GREG + MEE T+ K +
Sbjct: 412 VNDSSAFRTDWMPFGGVKESGVGREGVPYAMEEMTEEKTVVI 453
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 368 bits (948), Expect = e-123
Identities = 185/470 (39%), Positives = 272/470 (57%), Gaps = 15/470 (3%)
Query: 36 GEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVL 93
GEW S + V NP E LA++P EDV A +A A ++W+ T P+ER +L
Sbjct: 1 GEWRDGTSERTIDVLNPYTGETLAEIPAASKEDVDEAYRAAAAAQKEWAATLPQERAEIL 60
Query: 94 KRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVK 153
++ + LE + + E + +ESG ++ E A + + R G ++PS V
Sbjct: 61 EKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITREAATFPLRMEGRILPSDVP 120
Query: 154 SKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA-LALAAL 212
KE + REPLGVVG+I+PWNFP+ + R VAPALA G V+KPA DTP+T L LA +
Sbjct: 121 GKENRVYREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVLKPASDTPITGGLLLAKI 180
Query: 213 AHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRL 272
EA +PKGVLNVV + +G P ISFTGST VG+ + + +K++
Sbjct: 181 FEEAGLPKGVLNVVV---GAGSEIGDAFVEHPVPRLISFTGSTPVGRHIGELAGRHLKKV 237
Query: 273 SLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVE 332
+LELGGN PF+V +A++ AV+ A+ KF + GQ C+A NR ++ E V+D+FVE VE
Sbjct: 238 ALELGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVYDEFVEKF-VE 296
Query: 333 ITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFA 392
K+ GD S D +GPLIN +QV+ + ++ A+ +GA +++GG +
Sbjct: 297 RVKALPYGDPSDPDTV-VGPLINESQVDGLLDKIEQAVEEGATLLVGG----EAEGNVLE 351
Query: 393 PTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRV 452
PT+L+++T DM EE+FGPVA IK EEE+L +AN++ GL+G FT+D+ + +
Sbjct: 352 PTVLSDVTNDMEIAREEIFGPVAPIIKADDEEEALELANDTEYGLSGAVFTSDLERGVQF 411
Query: 453 GKKLQVGMVGINEGIISHTE--AAFGGVKESGLGREGSRHGMEEFTQIKY 500
+++ GM IN+ + + E FGG K SGLGR +EEFT K+
Sbjct: 412 ARRIDAGMTHINDQPV-NDEPHVPFGGEKNSGLGRFNGEWALEEFTTDKW 460
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 366 bits (941), Expect = e-123
Identities = 169/439 (38%), Positives = 245/439 (55%), Gaps = 16/439 (3%)
Query: 66 DVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGE 125
D A+ +A AF WS+T P ER +L + LE + E M +E+G T +
Sbjct: 1 DADQAVEAAAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETG--ATAAWAG 58
Query: 126 V---VYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITR 182
+ A + + + G +PS ++V+EP+GVV I PWN P+ + TR
Sbjct: 59 FNVDLAAGMLRE-AASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPVILGTR 117
Query: 183 KVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCT 242
+A LAAG T V+K +E +P T + + HEA +PKGVLNVVT S +A V + L
Sbjct: 118 AIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEALIA 177
Query: 243 SPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKF 302
P V ++FTGST+VG+I+ ++ +K + LELGG AP IV +A+L A + A+ F
Sbjct: 178 HPAVRKVNFTGSTRVGRIIAETAAKHLKPVLLELGGKAPAIVLEDADLDAAANAALFGAF 237
Query: 303 RNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKV 362
N GQ C++ R ++ E + D+FVE LK K F LG L++ A ++V
Sbjct: 238 LNSGQICMSTERIIVHESIADEFVEKLKAAAEKLF-------AGPVVLGSLVSAAAADRV 290
Query: 363 DSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKT 422
+V DA+SKGAK+++GG PTIL N+TPDM Y+EE FGPV I+ K
Sbjct: 291 KELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDMDIYSEESFGPVVSIIRVKD 350
Query: 423 EEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA--FGGVKE 480
EEE++ +AN+S GL+ FT D+++A V K+++ G V IN G+ H E GGVK
Sbjct: 351 EEEAVRIANDSEYGLSAAVFTRDLARALAVAKRIESGAVHIN-GMTVHDEPTLPHGGVKS 409
Query: 481 SGLGREGSRHGMEEFTQIK 499
SG GR + G++EFT+ K
Sbjct: 410 SGYGRFNGKWGIDEFTETK 428
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 366 bits (942), Expect = e-123
Identities = 173/457 (37%), Positives = 249/457 (54%), Gaps = 13/457 (2%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V +PA E +A VPD DV A+ +A AF W +TTP ER L + +E N +
Sbjct: 1 VVDPATGEEIATVPDASAADVDAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEE 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVD---WFSEEARRTYGELVPSPVKSKELLMVREP 163
LA + ++ +GKP + + VD +F+ AR G + ++ REP
Sbjct: 61 LAALESRNTGKPLHLVRDDELPGA--VDNFRFFAGAARTLEGPAAGEYLPGHTSMIRREP 118
Query: 164 LGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL 223
+GVV I PWN+P+ M K+APALAAG T V+KP+E TPLT L LA LA E +P GV+
Sbjct: 119 IGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAEV-LPPGVV 177
Query: 224 NVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFI 283
NVV S G L P V +S TGS + GK + + +KR+ LELGG AP I
Sbjct: 178 NVVCGGG---ASAGDALVAHPRVRMVSLTGSVRTGKKVARAAADTLKRVHLELGGKAPVI 234
Query: 284 VYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTS 343
V+ +A+L AV+G A + N GQ C AA R + E V+D+FV L VE + GD
Sbjct: 235 VFDDADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVYDEFVAAL-VEAVSAIRVGD-P 292
Query: 344 KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDM 403
++ +GPL + AQ E+V V+ A A+V+ GG + G F+ PT++ + D
Sbjct: 293 DDEDTEMGPLNSAAQRERVAGFVERA-PAHARVLTGGRRAEGPGY-FYEPTVVAGVAQDD 350
Query: 404 LCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGI 463
EE+FGPV F E+E++ +AN+ GLA +T D+ +A R+ +L G V +
Sbjct: 351 EIVQEEIFGPVVTVQPFDDEDEAIELANDVEYGLASSVWTRDVGRAMRLSARLDFGTVWV 410
Query: 464 NEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKY 500
N I E GG K+SG G++ S + +E++T+IK+
Sbjct: 411 NTHIPLAAEMPHGGFKQSGYGKDLSIYALEDYTRIKH 447
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 366 bits (942), Expect = e-122
Identities = 183/479 (38%), Positives = 269/479 (56%), Gaps = 16/479 (3%)
Query: 29 YTQAYINGEWVH--SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ---WSQ 83
YT+ +IN EW S K FP NPA E + +V + DV A+ +A+ AF+ W
Sbjct: 6 YTKIFINNEWHDSVSGKTFPTINPATGEKICEVQEGDKADVDKAVKAARAAFKLGSPWRT 65
Query: 84 TTPKERGIVLKRWLKELEGNKQALAEIMTQESGKP-PTESLGEVVYANSFVDWFSEEARR 142
ERG +L + +E ++ LA + T ++GKP L ++ A + +++ A +
Sbjct: 66 MDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAGWADK 125
Query: 143 TYGELVPSPVKSKELLMVR-EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAED 201
+G+ +P + R EP+GV G I PWNFP+ M K+APALA G T V+KPAE
Sbjct: 126 IHGKTIP--MDGDFFTYTRHEPVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQ 183
Query: 202 TPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGK-I 260
TPLTAL LA+L EA P GV+NVV A G + + P + ++FTGST+VGK I
Sbjct: 184 TPLTALYLASLIKEAGFPPGVVNVVPGYGPTA---GAAISSHPDIDKVAFTGSTEVGKLI 240
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ +KR++LELGG +P IV+++A+L AV A A F N GQ C A +R +QE
Sbjct: 241 QQAAGKSNLKRVTLELGGKSPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRTFVQES 300
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
++D+FV+ VE K + G+ + K GP I+ Q +K+ +++ +GAK+ GG
Sbjct: 301 IYDEFVKRS-VERAKKRVVGNPF-DPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGG 358
Query: 381 GKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
+ G F PT+ +++T DM EE+FGPV KFKT +E + ANN+ GLA
Sbjct: 359 KRHGDKGY-FIQPTVFSDVTDDMRIAKEEIFGPVQQIFKFKTIDEVIERANNTTYGLAAA 417
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
FT DI +A L+ G V +N + +A FGG K SG GRE +G++E+T++K
Sbjct: 418 VFTKDIDKAITFSNALRAGTVWVNCYNVVSPQAPFGGYKMSGNGRELGEYGLQEYTEVK 476
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 364 bits (936), Expect = e-121
Identities = 176/479 (36%), Positives = 266/479 (55%), Gaps = 20/479 (4%)
Query: 33 YINGEWVHSSKK--FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+INGEWV SK F YNP N + L ++P EDV A+ +A EAF+ W +T+ ER
Sbjct: 4 FINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTAEDVDLAVDAAHEAFKTWGKTSVAERA 63
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYGELVP 149
+L + +E N + LA T ++GKP E+L ++ A +F+ R G L
Sbjct: 64 NILNKIADRIEENLELLAVAETLDNGKPIRETLAADIPLAIDHFRYFAGVIRAQEGSL-- 121
Query: 150 SPVKSKEL-LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
S + L EPLGVVG I PWNFP+ M K+APALAAG T V+KPA TPL+ L
Sbjct: 122 SEIDEDTLSYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPASQTPLSILV 181
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG 268
L L + +PKGV+NVVT + A GK L + P +A ++FTGST VG+++ + ++
Sbjct: 182 LMELIGDL-LPKGVVNVVTGFGSEA---GKPLASHPRIAKLAFTGSTTVGRLIMQYAAEN 237
Query: 269 IKRLSLELGGNAPFIVYSNA-----NLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFD 323
+ ++LELGG +P I + +A + N G+ C +R L+QE ++D
Sbjct: 238 LIPVTLELGGKSPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGEVCTCPSRALVQESIYD 297
Query: 324 QFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKV 383
+F+E VE ++ G+ + + +G ++ Q+EK+ S V +GA+V+ GG ++
Sbjct: 298 EFIERA-VERFEAIKVGN-PLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERL 355
Query: 384 TK---LGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
T F+ PT++ DM + EE+FGPV I FK EEE++ +AN++ GL G
Sbjct: 356 TLGGLDKGYFYEPTLIKGGNNDMRIFQEEIFGPVLAVITFKDEEEAIAIANDTEYGLGGG 415
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+T DI++A RV + +Q G V +N A FGG K+SG+GRE + ++ + Q K
Sbjct: 416 VWTRDINRALRVARGIQTGRVWVNCYHQYPAHAPFGGYKKSGIGRETHKMMLDHYQQTK 474
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 360 bits (926), Expect = e-120
Identities = 177/474 (37%), Positives = 269/474 (56%), Gaps = 14/474 (2%)
Query: 33 YINGEWVHSSKK--FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+I+GE+V S + NPAN E +A V EDV+ AI +A+ A +W+ +P ERG
Sbjct: 1 FIDGEYVEDSAGTTREIINPANGEVIATVHAATPEDVERAIAAARRAQGEWAAMSPMERG 60
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESL--GEVVYANSFVDWFSEEARRTYGELV 148
+L+R + + LA++ T ++GK E++ A+ F ++F+ A GE++
Sbjct: 61 RILRRAADLIRERNEELAKLETLDTGKTLQETIVADMDSGADVF-EFFAGLAPALNGEII 119
Query: 149 PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
P S +REPLGV I WN+P+ + + K+APALAAG V KP+E+TPLTAL
Sbjct: 120 PLGGPS-FAYTIREPLGVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSENTPLTALK 178
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG 268
+A + EA +PKGV NVV + VG LL P VA +SFTG GK + + +
Sbjct: 179 VAEIMEEAGLPKGVFNVVQG---DGAEVGPLLVNHPDVAKVSFTGGVPTGKKIMAAAAGH 235
Query: 269 IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEM 328
+K +++ELGG +P IV+ +A+L+ AV GAM F + GQ C R + +++ ++F+
Sbjct: 236 LKHVTMELGGKSPLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVHKKIKERFLAR 295
Query: 329 LKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGS 388
L VE T+ GD +GPLI+ A +KV S ++ ++GA + GGG+ +G
Sbjct: 296 L-VERTERIKLGDPFDEAT-EMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGL 353
Query: 389 K---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
+ F PT+ + T DM EE+FGPV + F E+E + AN++ GLAG FT D
Sbjct: 354 QNGFFVEPTVFADCTDDMTIVREEIFGPVMTVLTFSDEDEVIARANDTEYGLAGGVFTAD 413
Query: 446 ISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+ +A RV +L+ G V IN + EA FGG K+SG+GRE + + +T++K
Sbjct: 414 LGRAHRVADQLEAGTVWINTYNLYPAEAPFGGYKQSGIGRENGKAALAHYTEVK 467
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 359 bits (923), Expect = e-119
Identities = 180/475 (37%), Positives = 276/475 (58%), Gaps = 17/475 (3%)
Query: 33 YINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+INGEWV S + YNPAN E L+++ D DV A+ +A+EAF+ W +TT ER
Sbjct: 4 FINGEWVKGSSGETIDSYNPANGETLSEITDATDADVDRAVKAAQEAFKTWRKTTVAERA 63
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYGELVP 149
+L + ++ NK+ LA + T ++GKP E+ ++ A +F+ R G
Sbjct: 64 NILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPLAADHFRYFAGVIRAEEGSAN- 122
Query: 150 SPVKSKELL--MVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+ ++ L ++REP+GVVG I PWNFP M K+APALAAG T VIKP+ T L+ L
Sbjct: 123 --MIDEDTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPSSTTSLSLL 180
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
LA + + +PKGV+N+VT + + G+ L P + ++FTGST+VG+ + ++
Sbjct: 181 ELAKIIQDV-LPKGVVNIVTGKGSKS---GEYLLNHPGLDKLAFTGSTEVGRDVAIAAAK 236
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
+ +LELGG + I++ +AN KA+ GA N GQ C A +R +QE ++D+FV
Sbjct: 237 KLIPATLELGGKSANIIFDDANWDKALEGAQLGILFNQGQVCCAGSRIFVQEGIYDEFVA 296
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
LK + ++ + +G +N Q++K+ S V A +GAK++ GG ++T+ G
Sbjct: 297 KLKEKFEN--VKVGNPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENG 354
Query: 388 ---SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTN 444
F PT++ N+T DM EE+FGPVA IKFKTE+E + +AN+S GL G FT
Sbjct: 355 LDKGFFIEPTLIVNVTNDMRVAQEEIFGPVATVIKFKTEDEVIDMANDSEYGLGGGVFTK 414
Query: 445 DISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
DI++A RV + ++ G V +N A FGG K+SG+GRE + ++ +TQ+K
Sbjct: 415 DINRALRVARAVETGRVWVNTYNQIPAGAPFGGYKKSGIGRETHKSMLDAYTQMK 469
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 355 bits (914), Expect = e-118
Identities = 175/465 (37%), Positives = 255/465 (54%), Gaps = 19/465 (4%)
Query: 45 FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNK 104
V NP E +A V G +D++ AI +A +AF R +L + LE
Sbjct: 1 LEVTNPYTGEVVARVALAGPDDIEEAIAAAVKAFRPMRALPAHRRAAILLHCVARLEERF 60
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP---SPVKSKELLMVR 161
+ LAE + E+GKP ++ GEV A +EEA R YGE++P S +VR
Sbjct: 61 EELAETIVLEAGKPIKDARGEVARAIDTFRIAAEEATRIYGEVLPLDISARGEGRQGLVR 120
Query: 162 E-PLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPK 220
P+G V ITP+NFP+ ++ KVAPA+AAGC V+KPA TPL+AL L + E +PK
Sbjct: 121 RFPIGPVSAITPFNFPLNLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLPK 180
Query: 221 GVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNA 280
G +V+ SR +A+ LL T + +SFTGS VG L + G K++ LELGGNA
Sbjct: 181 GAFSVLPCSRDDAD----LLVTDERIKLLSFTGSPAVGWDLKARA--GKKKVVLELGGNA 234
Query: 281 PFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQG 340
IV S+A+L A + F GQ+C++ R L+ V+D+F L V K+ G
Sbjct: 235 AVIVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVLVHRSVYDEFKSRL-VARVKALKTG 293
Query: 341 DTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNIT 400
D K+D ++GP+I+ ++ E+V+ V +A+ GAK++ GG K PTIL ++
Sbjct: 294 D-PKDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGG----KRDGALLEPTILEDVP 348
Query: 401 PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGM 460
PDM EEVFGPV + +E+L N+S GL FT D+ +A R +L+VG
Sbjct: 349 PDMEVNCEEVFGPVVTVEPYDDFDEALAAVNDSKFGLQAGVFTRDLEKALRAWDELEVGG 408
Query: 461 VGINEGIISH--TEAAFGGVKESGLGREGSRHGMEEFTQIKYMCF 503
V IN+ + + +GGVK+SG+GREG R+ +EE T+ + +
Sbjct: 409 VVIND-VPTFRVDHMPYGGVKDSGIGREGVRYAIEEMTEPRLLVI 452
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 354 bits (909), Expect = e-117
Identities = 183/481 (38%), Positives = 272/481 (56%), Gaps = 21/481 (4%)
Query: 29 YTQAYINGEWVH--SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQT 84
+T+ +ING++V S K FP +P N E +A V + EDV A+ +A++AF++ W +
Sbjct: 3 HTKLFINGQFVDAASGKTFPTIDPRNGEVIAHVAEGDAEDVDRAVKAARKAFDEGPWPRM 62
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES-LGEVVYANSFVDWFSEEARRT 143
T ER +L R+ LE + LA + T ++GKP ++ EV A +++ A +
Sbjct: 63 TGYERSRILLRFADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFRYYAGWADKI 122
Query: 144 YGELVPS--PVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAED 201
+G +P+ P L EP+GVVG I PWNFP+ M KV PALA G T V+KPAE
Sbjct: 123 HGMTLPADGPHHVYTL---HEPIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQ 179
Query: 202 TPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKIL 261
TPL+AL A LA EA +P GVLN+VT + G + + V ++FTGST+VGKI+
Sbjct: 180 TPLSALLAAKLAAEAGLPDGVLNIVTGF---GPTAGAAIASHMDVDKVAFTGSTEVGKII 236
Query: 262 YSHCSQG-IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
++ +K ++LELGG +PFIV +A++ KAV A A F N GQ C A +R + E
Sbjct: 237 MQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHES 296
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
++D+FVE K K + GD + GP ++ Q EK+ S ++ +GA +I GG
Sbjct: 297 IYDEFVEKAKARALKRVV-GDPFRK-GVEQGPQVDKEQFEKILSYIEHGKEEGATLITGG 354
Query: 381 GKVTKLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLA 438
++ GSK + PTI +++ DM +E+FGPV +KFKT +E + ANNS GLA
Sbjct: 355 DRI---GSKGYYIQPTIFSDVKDDMKIARDEIFGPVQSILKFKTVDEVIKRANNSKYGLA 411
Query: 439 GYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQI 498
F+ +I A + + L+ G V +N + FGG K SG+GRE + + + Q+
Sbjct: 412 AGVFSKNIDTANTLSRALKAGTVWVNCYDVFDASIPFGGYKMSGIGREKGIYALNNYLQV 471
Query: 499 K 499
K
Sbjct: 472 K 472
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 348 bits (895), Expect = e-115
Identities = 173/479 (36%), Positives = 248/479 (51%), Gaps = 23/479 (4%)
Query: 31 QAYINGEWVHSSKKF-PVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTP-KE 88
+ INGEW SS K VY+P + E + VP + ++ A +A +A W T P +E
Sbjct: 3 KYLINGEWKESSGKTIEVYSPIDGEVIGSVPALSALEILEAAETAYDAGRGWWPTMPLEE 62
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV 148
R L ++ L+ NK+ +A ++ E GK ++L EV ++ EE +R G+ +
Sbjct: 63 RIDCLHKFADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRDTIEELKRLDGDSL 122
Query: 149 PSP----VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
P K K + REPLGVV I P+N+P+ + K+ PAL G T V KPA L
Sbjct: 123 PGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLIPALIMGNTVVFKPATQGVL 182
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
+ LA H+A PKGV+NVVT +G L T + ISFTGST+VG L
Sbjct: 183 LGIPLAEAFHDAGFPKGVVNVVT---GRGREIGDPLVTHGRIDVISFTGSTEVGNRLKK- 238
Query: 265 CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
+KRL LELGG P IV +A+L+ A + GQ C A R L+ E V D+
Sbjct: 239 -QHPMKRLVLELGGKDPAIVLPDADLELAAKEIVKGALSYSGQRCTAIKRVLVHESVADE 297
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT 384
VE+LK E+ K + G ++ ++ PLI+ + V+ ++ DA++KGA V+ GGG+
Sbjct: 298 LVELLKEEVAKLKV-GM-PWDNGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGGREG 355
Query: 385 KLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTN 444
PT+L +TPDM EE FGPV I+ EE++ +AN SN GL FT
Sbjct: 356 G---NLIYPTLLDPVTPDMRLAWEEPFGPVLPIIRVNDIEEAIELANKSNYGLQASIFTK 412
Query: 445 DISQAWRVGKKLQVGMVGINE----GIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
DI++A ++ L+VG V IN G F G K+SG+G +G + T+ K
Sbjct: 413 DINKARKLADALEVGTVNINSKCQRGPDHF---PFLGRKDSGIGTQGIGDALRSMTRRK 468
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 345 bits (887), Expect = e-114
Identities = 172/466 (36%), Positives = 258/466 (55%), Gaps = 21/466 (4%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+ING+WV + K FP NPA E LA V EDV A+ +A+ AFE WS R
Sbjct: 25 FINGKWVKPENRKSFPTINPATGEVLASVLQAEEEDVDAAVAAARTAFESWSALPGHVRA 84
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEARRTYGELVP 149
L R + ++ +++ A + + ++GKP ES ++ + A+
Sbjct: 85 RHLYRIARHIQKHQRLFAVLESLDNGKPIRESRDCDIPLVARHFYHHAGWAQ-------- 136
Query: 150 SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALAL 209
L +P+GVVG I PWNFP+ M+ K+ PALA G T V+KPAE TPLTAL
Sbjct: 137 ---LLDTELAGWKPVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLF 193
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
A + EA +P GVLN+VT S G L P V ++FTGST+VG+ L +
Sbjct: 194 AEICAEAGLPPGVLNIVTG----NGSFGSALANHPGVDKVAFTGSTEVGRALRRATAGTG 249
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
K+LSLELGG +PFIV+ +A+L AV G + A + N GQ C A +R L+QE V ++ + L
Sbjct: 250 KKLSLELGGKSPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRLLVQESVAEELIRKL 309
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK 389
K ++ + K ++G +++ AQ++++ +V++ ++GA V G + G
Sbjct: 310 KERMSHLRVGDPLDKA--IDMGAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGP- 366
Query: 390 FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQA 449
F+ PT+ TN+ P EE+FGPV V + F+T +E++ +ANN+ GLA ++ ++S A
Sbjct: 367 FYPPTLFTNVPPASRIAQEEIFGPVLVVLTFRTAKEAVALANNTPYGLAASVWSENLSLA 426
Query: 450 WRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEF 495
V L+ G+V IN + A FGG +ESG GREG + G+ E+
Sbjct: 427 LEVALSLKAGVVWINGHNLFDAAAGFGGYRESGFGREGGKEGLYEY 472
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 345 bits (887), Expect = e-114
Identities = 175/482 (36%), Positives = 253/482 (52%), Gaps = 27/482 (5%)
Query: 31 QAYINGEWVH--SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKE 88
YI+G +V S + F V NPA E LA V DV+ A+ SAK+ + W+ T E
Sbjct: 8 SLYIDGAYVEATSGETFEVINPATGEVLATVQAATPADVEAAVASAKQGQKIWAAMTAME 67
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFS-EEARRTYGEL 147
R +L+R + L LA + T ++GKP E+ S VD + + Y L
Sbjct: 68 RSRILRRAVDILRERNDELAALETLDTGKPIQET--------SVVDIVTGADVLEYYAGL 119
Query: 148 VPS------PVKSKELL-MVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
P+ P++ + REPLGV I WN+P+ + K APALAAG + KP+E
Sbjct: 120 APALEGEQIPLRGGSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSE 179
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI 260
TPLTAL LA + EA +P GV NVV VG L P +A +SFTG GK
Sbjct: 180 VTPLTALKLAEIYTEAGLPDGVFNVVQGDG----RVGAWLTEHPDIAKVSFTGGVPTGKK 235
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ + + +K +++ELGG +P IV+ +A+L +A AM A F + GQ C R +Q+
Sbjct: 236 VMAAAAASLKEVTMELGGKSPLIVFDDADLDRAADIAMLANFYSSGQVCTNGTRVFVQKS 295
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
+ F L E + GD + N GPL++ A +KV ++ ++GA+++ GG
Sbjct: 296 IKAAFEARLL-ERVERIRIGDPM-DPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGG 353
Query: 381 GKVTKLGSK---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGL 437
++T+ G F APT+ T+ T DM EE+FGPV + F E+E + AN++ GL
Sbjct: 354 ERLTEGGFANGAFVAPTVFTDCTDDMTIVREEIFGPVMSVLTFDDEDEVIARANDTEYGL 413
Query: 438 AGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQ 497
A FT D+S+A RV +L+ G+ IN S E GG K+SG+GRE +E +TQ
Sbjct: 414 AAGVFTADLSRAHRVIHQLEAGICWINTWGESPAEMPVGGYKQSGIGRENGIATLEHYTQ 473
Query: 498 IK 499
IK
Sbjct: 474 IK 475
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 342 bits (879), Expect = e-113
Identities = 167/459 (36%), Positives = 260/459 (56%), Gaps = 20/459 (4%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V NP E + VP E ++ A+ A S T +R +L + LE ++
Sbjct: 3 VRNPYTGEVVGTVPAGTEEALREALALA---ASYRSTLTRYQRSAILNKAAALLEARREE 59
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPV----KSKELLMVRE 162
A ++T ESG ++ EV A + + + EA R GE + K++++ +RE
Sbjct: 60 FARLITLESGLCLKDTRYEVGRAADVLRFAAAEALRDDGESFSCDLTANGKARKIFTLRE 119
Query: 163 PLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGV 222
PLGVV ITP+N P+ + K+APA+AA V+KP+E TPL+A+ LA L +EA +P +
Sbjct: 120 PLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYEAGLPPDM 179
Query: 223 LNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPF 282
L+VVT +G L T P V ++FTG VGK + + G KR LELGGN P
Sbjct: 180 LSVVTG---EPGEIGDELITHPDVDLVTFTGGVAVGKAI--AATAGYKRQLLELGGNDPL 234
Query: 283 IVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDT 342
IV +A+L++A + A+A + N GQ C A R L+ E V D+FV++L VE + + + GD
Sbjct: 235 IVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESVADEFVDLL-VEKSAALVVGDP 293
Query: 343 SKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPD 402
++G +I+ ++++ V++AI++GA+V+LG + +APT+L ++ PD
Sbjct: 294 MDPAT-DMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQRQ----GALYAPTVLDHVPPD 348
Query: 403 MLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVG 462
TEE FGPVA I+ K +E++ ++N++ GL+ TND+ R+ ++L VG V
Sbjct: 349 AELVTEETFGPVAPVIRVKDLDEAIAISNSTAYGLSSGVCTNDLDTIKRLVERLDVGTVN 408
Query: 463 INEGIISHTE-AAFGGVKESGLG-REGSRHGMEEFTQIK 499
+NE +E + FGGVK+SGLG +EG R M+E T +K
Sbjct: 409 VNEVPGFRSELSPFGGVKDSGLGGKEGVREAMKEMTNVK 447
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 338 bits (868), Expect = e-112
Identities = 160/436 (36%), Positives = 239/436 (54%), Gaps = 14/436 (3%)
Query: 65 EDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG 124
DV A A A W+ T P+ER VL+R LE + +A+ + +ESG ++
Sbjct: 13 ADVDRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVRESGSIRPKAGF 72
Query: 125 EVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKV 184
EV A + + + GE++PS + L R PLGVVG+I+P+NFP+ + R V
Sbjct: 73 EVGAAIGELHEAAGLPTQPQGEILPSA-PGRLSLARRVPLGVVGVISPFNFPLILAMRSV 131
Query: 185 APALAAGCTCVIKPAEDTPLTA-LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTS 243
APALA G V+KP TP++ + +A L EA +P GVL+V+ G+ L
Sbjct: 132 APALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHVLPG----GADAGEALVED 187
Query: 244 PHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFR 303
P+VA ISFTGST VG+ + + +K++SLELGG IV +A+L A S F
Sbjct: 188 PNVAMISFTGSTAVGRKVGEAAGRHLKKVSLELGGKNALIVLDDADLDLAASNGAWGAFL 247
Query: 304 NCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVD 363
+ GQ C+AA R L+ E V D + L K GD + + LGPLIN Q+++V
Sbjct: 248 HQGQICMAAGRHLVHESVADAYTAKL-AAKAKHLPVGDPAT-GQVALGPLINARQLDRVH 305
Query: 364 SIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE 423
+IV D+++ GA++ GG T G F+ PT+L+ + P M + EE+FGPVA F ++
Sbjct: 306 AIVDDSVAAGARLEAGG---TYDG-LFYRPTVLSGVKPGMPAFDEEIFGPVAPVTVFDSD 361
Query: 424 EESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISH-TEAAFGGVKESG 482
EE++ +AN++ GL+ + D+ +A + +L+ GM+ IN+ ++ FGG+ SG
Sbjct: 362 EEAVALANDTEYGLSAGIISRDVGRAMALADRLRTGMLHINDQTVNDEPHNPFGGMGASG 421
Query: 483 LG-REGSRHGMEEFTQ 497
G R G EEFTQ
Sbjct: 422 NGSRFGGPANWEEFTQ 437
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 339 bits (870), Expect = e-111
Identities = 179/474 (37%), Positives = 264/474 (55%), Gaps = 15/474 (3%)
Query: 33 YINGEWVHSSKK--FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFE-QWS-QTTPKE 88
+INGE+V S VYNP+ + + + + DV A+ A AFE W + + +
Sbjct: 10 FINGEFVDSVHGGTVKVYNPSTGKLITKIAEATEADVDIAVEVAHAAFETDWGLKVSGSK 69
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKP-PTESLGEVVYANSFVDWFSEEARRTYGEL 147
RG L + +E N LA I ++GK T +V + ++ A + +G++
Sbjct: 70 RGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFRYYGGWADKIHGQV 129
Query: 148 VPSPVKSKELLMVR-EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA 206
+ + K+L R EP+GV G I PWNFP+ M K+APALAAG T V+KP+E TPL+A
Sbjct: 130 IET--DIKKLTYTRHEPIGVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSELTPLSA 187
Query: 207 LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVG-KILYSHC 265
L + L EA P GV+NVV+ + G + + + ++FTGST VG K++ +
Sbjct: 188 LYMTKLIPEAGFPPGVINVVSG---YGRTCGNAISSHMDIDKVAFTGSTLVGRKVMEAAA 244
Query: 266 SQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQF 325
+K+++LELGG +P IV+ +A+L+ AV F N GQ C A +R +QE ++D+F
Sbjct: 245 KSNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNHGQVCCAGSRIYVQEGIYDKF 304
Query: 326 VEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTK 385
V+ K E K GD D GP ++ Q E++ S ++ ++GA V GG +
Sbjct: 305 VKRFK-EKAKKLKVGDPFAEDTFQ-GPQVSQIQYERIMSYIESGKAEGATVETGGKRHGN 362
Query: 386 LGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
G F PTI T++T DM EE+FGPV IKFKTEEE++ AN+S GLA FTN+
Sbjct: 363 EGY-FIEPTIFTDVTEDMKIVKEEIFGPVVAVIKFKTEEEAIKRANDSTYGLAAAVFTNN 421
Query: 446 ISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
I+ A RV L+ G V +N + H + FGG K+SG+GRE + +E +TQIK
Sbjct: 422 INNAIRVANALKAGTVWVNCYNLLHHQVPFGGYKQSGIGRELGEYALENYTQIK 475
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 337 bits (865), Expect = e-111
Identities = 177/460 (38%), Positives = 252/460 (54%), Gaps = 14/460 (3%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V NPA + + +VP DV A+ +AK AF +W+ T +ERG +L R LE +
Sbjct: 1 VINPATGQVIGEVPRSRAADVDRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEE 60
Query: 107 LAEIMTQESGKP-PTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLG 165
LA ++ E+G T++ E +F A GE +P VREPLG
Sbjct: 61 LARLLALETGNALRTQARPEAAVLADLFRYFGGLAGELKGETLP-FGPDVLTYTVREPLG 119
Query: 166 VVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNV 225
VVG I PWN P+ + K+APAL AG T V+K AED PL L LA + + +P GVLNV
Sbjct: 120 VVGAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAPLAVLLLAEILAQV-LPAGVLNV 178
Query: 226 VTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVY 285
+T G L P V ++FTGST+VGKI+Y + + +SLELGG +P IV+
Sbjct: 179 ITGY---GEECGAALVDHPDVDKVTFTGSTEVGKIIYRAAADRLIPVSLELGGKSPMIVF 235
Query: 286 SNANLQKAVSGAMAA-KFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK 344
+A+L AV GA+A +F GQ+C A +R + E ++D F+E L +++K I GD
Sbjct: 236 PDADLDDAVDGAIAGMRFTRQGQSCTAGSRLFVHEDIYDAFLEKLVAKLSKLKI-GD-PL 293
Query: 345 NDKCNLGPLINLAQVEKVDSIVQDAIS-KGAKVILGGG--KVTKLGSKFF-APTILTNIT 400
++ ++G +I+ Q KV + +S GA V+ GG L FF PTI + +
Sbjct: 294 DEATDIGAIISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGVD 353
Query: 401 PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGM 460
+ EE+FGPV I +K E+E + +AN+S+ GLA Y +T D+ +A R L+ G
Sbjct: 354 NEWRLAREEIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWTRDLGRALRAAHALEAGW 413
Query: 461 VGINEGIISHTEAAFGGVKESGLGREGSRHGM-EEFTQIK 499
V +N+G ++GG K+SGLGRE S GM E FTQ K
Sbjct: 414 VQVNQGGGQQPGQSYGGFKQSGLGREASLEGMLEHFTQKK 453
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 335 bits (861), Expect = e-110
Identities = 173/479 (36%), Positives = 259/479 (54%), Gaps = 16/479 (3%)
Query: 33 YINGEWVHSSKK--FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+I+GE+V S F +PA +E L V G DV A +AKEAF++W++ ER
Sbjct: 4 FIDGEFVPSESGETFETLSPATNEVLGSVARGGAADVDRAAKAAKEAFKRWAELKAAERK 63
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA-RRTYGELVP 149
L + +E + +A + + G+P ++ +V+ A +F+++ G P
Sbjct: 64 RYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQVIRAAENFRFFADKCEEAMDGRTYP 123
Query: 150 SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALAL 209
VR P+G VGLITPWN P + T K+APALA G T V+KPAE +PLTA L
Sbjct: 124 VDTHLN--YTVRVPVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARL 181
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
A +A EA +P GV N+V A GK L P V +SFTG T G I+ + + +
Sbjct: 182 AEIAKEAGLPDGVFNLVHGFGEEA---GKALVAHPDVKAVSFTGETATGSIIMRNGADTL 238
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
KR S+ELGG +P IV+ +A+L++A+ + F G+ C A++R L+QE + + FVE L
Sbjct: 239 KRFSMELGGKSPVIVFDDADLERALDAVVFMIFSFNGERCTASSRLLVQESIAEDFVEKL 298
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK 389
E ++ G + +GPLI+ + KV V+ A +GA +++GG + +
Sbjct: 299 V-ERVRAIRVGHPLDPET-EVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGE 356
Query: 390 ------FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT 443
+ PT+ T M EE+FGPV I FK EEE++ AN++ GLAGY +T
Sbjct: 357 DLGRGNYVLPTVFTGADNHMRIAQEEIFGPVLTVIPFKDEEEAIEKANDTRYGLAGYVWT 416
Query: 444 NDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
ND+ +A RV L+ GM+ +N + H FGGVK SG+GREG + + +T+ K +
Sbjct: 417 NDVGRAHRVALALEAGMIWVNSQNVRHLPTPFGGVKASGIGREGGTYSFDFYTETKNVA 475
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 329 bits (846), Expect = e-108
Identities = 175/493 (35%), Positives = 279/493 (56%), Gaps = 20/493 (4%)
Query: 17 HMKYLQK--LCLSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIM 72
H+ Y Q L L+ + +INGE+ ++ + F +P LA + D+ A+
Sbjct: 5 HLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAVS 64
Query: 73 SAKEAFEQ--WSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYA 129
+A+ FE+ WS ++P +R VL + +E + + LA + T ++GKP SL ++ A
Sbjct: 65 AARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGA 124
Query: 130 NSFVDWFSEEARRTYGELVPSPVKSKELLM-VREPLGVVGLITPWNFPMAMITRKVAPAL 188
+ W++E + YGE+ + S EL M VREP+GV+ I PWNFP+ + K+ PAL
Sbjct: 125 ARAIRWYAEAIDKVYGEVATT--SSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPAL 182
Query: 189 AAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAG 248
AAG + ++KP+E +PL+A+ LA LA EA +P GVLNVVT A G+ L +
Sbjct: 183 AAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEA---GQALSRHNDIDA 239
Query: 249 ISFTGSTQVGKILYSHCSQG-IKRLSLELGGNAPFIVYSNA-NLQKAVSGAMAAKFRNCG 306
I+FTGST+ GK L +KR+ LE GG + IV+++ +LQ+A S A F N G
Sbjct: 240 IAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQG 299
Query: 307 QACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIV 366
Q C+A R L++E + D+F+ +LK + +++ G + +G LI+ A + V S +
Sbjct: 300 QVCIAGTRLLLEESIADEFLALLKQQA-QNWQPGH-PLDPATTMGTLIDCAHADSVHSFI 357
Query: 367 QDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEES 426
++ SKG +++L G + PTI ++ P+ EE+FGPV V +F +EE++
Sbjct: 358 REGESKG-QLLLDGRNAGLAAA--IGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQA 414
Query: 427 LCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGRE 486
L +AN+S GL +T D+S+A R+ ++L+ G V +N FGG K+SG GR+
Sbjct: 415 LQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRD 474
Query: 487 GSRHGMEEFTQIK 499
S H +E+FT++K
Sbjct: 475 KSLHALEKFTELK 487
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 325 bits (834), Expect = e-106
Identities = 170/486 (34%), Positives = 256/486 (52%), Gaps = 23/486 (4%)
Query: 31 QAYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFE-QWSQTTPKER 89
+ +ING +V S K F NP + +A V + G +V A+ +A+ A + W + T ER
Sbjct: 2 RNFINGAFVESGKTFANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPWGKMTVAER 61
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVV-----YANSFVDWFSEEARRTY 144
+L E+E ++GKP SL + AN V F++ +
Sbjct: 62 ADLLYAVADEIERRFDDFLAAEVADTGKP--RSLASHLDIPRGAANFRV--FADVVKNAP 117
Query: 145 GEL--VPSPVKSKEL-LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAED 201
E + +P L VR+PLGVVG+I+PWN P+ ++T KV PALA G T V+KP+E+
Sbjct: 118 TECFEMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEE 177
Query: 202 TPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKIL 261
TP TA L + + +PKGV NVV +S G+ L P V I+FTG T+ G +
Sbjct: 178 TPGTATLLGEVMNAVGVPKGVYNVVHG--FGPDSAGEFLTRHPGVDAITFTGETRTGSAI 235
Query: 262 YSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQV 321
+ G+K +S ELGG IV+++ + AV+G + + F N GQ C+ R ++ +
Sbjct: 236 MKAAADGVKPVSFELGGKNAAIVFADCDFDAAVAGILRSAFLNTGQVCLGTERVYVERPI 295
Query: 322 FDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGG 381
FD+FV LK +S G + N+GPLI+ +KV S A+ +GA V+ GGG
Sbjct: 296 FDRFVAALK-ARAESLKIGVPD-DPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGG 353
Query: 382 KVTKLGSK-----FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTG 436
V G + PTI T + TEE+FGP F +EEE + +AN++ G
Sbjct: 354 -VPDFGDALAGGAWVQPTIWTGLPDSARVVTEEIFGPCCHIAPFDSEEEVIALANDTPYG 412
Query: 437 LAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFT 496
LA +T D+S+A RV ++++VG+V +N + FGG K SG+GREG H +E +T
Sbjct: 413 LAASVWTEDLSRAHRVARQMEVGIVWVNSWFLRDLRTPFGGSKLSGIGREGGVHSLEFYT 472
Query: 497 QIKYMC 502
++ +C
Sbjct: 473 ELTNVC 478
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 324 bits (832), Expect = e-106
Identities = 173/479 (36%), Positives = 255/479 (53%), Gaps = 16/479 (3%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFE-QWSQTTPKER 89
+I+G V S K+ + NPA ++ +A V DV A+ SA AF W++TTP ER
Sbjct: 3 FIDGRPVAGQSEKRLDITNPATEQVIASVASATEADVDAAVASAWRAFVSAWAKTTPAER 62
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYGE-L 147
G +L R +E + + LA++ T SGK S EV + +F+ +F+ A + GE L
Sbjct: 63 GRILLRLADLIEQHGEELAQLETLCSGKSIHLSRAFEVGQSANFLRYFAGWATKINGETL 122
Query: 148 VPS-PVKSKE---LLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTP 203
PS P E REP+GVV I PWNF + + K+ ALA GCT VIKP+E TP
Sbjct: 123 APSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEFTP 182
Query: 204 LTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYS 263
LT L +A LA EA IP GVLNVV +VG L + P VA +SFTGS GK +
Sbjct: 183 LTLLRVAELAKEAGIPDGVLNVVNGK----GAVGAQLISHPDVAKVSFTGSVATGKKIGR 238
Query: 264 HCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFD 323
+ + R++LELGG +A++ V G + A F + GQ C A RF + FD
Sbjct: 239 QAASDLTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQVCAAPERFYVHRSKFD 298
Query: 324 QFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKV 383
+ V LK + SF G ++ GPL N +KV S + DA ++G +++ GG +
Sbjct: 299 ELVTKLKQAL-SSFQVGS-PMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEAL 356
Query: 384 TKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT 443
G F PT++ + D EE FGPV + ++ EEE + + N++ GL +T
Sbjct: 357 AGEGY-FVQPTLVLARSADSRLMREETFGPVVSFVPYEDEEELIQLINDTPFGLTASVWT 415
Query: 444 NDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
N++S+A R +++ G V +N FGG+K+SG+GRE ++++T++K +
Sbjct: 416 NNLSKALRYIPRIEAGTVWVNMHTFLDPAVPFGGMKQSGIGREFGSAFIDDYTELKSVM 474
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 324 bits (832), Expect = e-105
Identities = 178/481 (37%), Positives = 279/481 (58%), Gaps = 21/481 (4%)
Query: 29 YTQAYINGEWVH--SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQT 84
+T+ +INGE+V S K F +P E +A + + EDV A+ +A+EAF+ W +
Sbjct: 20 FTKLFINGEFVDAASGKTFETRDPRTGEVIARIAEGDKEDVDLAVKAAREAFDHGPWPRM 79
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVV---YANSFVDWFSEEAR 141
+ ERG ++ ++ +E + + LA + T ++GK LG+ V A + +++ A
Sbjct: 80 SGFERGRIMMKFADLIEEHIEELAALDTIDAGKLFA--LGKAVDIPAAAGLLRYYAGAAD 137
Query: 142 RTYGELVPSPVKSKEL--LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPA 199
+ +GE + S++L ++EP+GVVG I PWNFP M KVAPALAAGCT V+KPA
Sbjct: 138 KIHGETLKM---SRQLQGYTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPA 194
Query: 200 EDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVG- 258
E TPL+AL A LA A +P GV+NVVT A G + + V +SFTGST+VG
Sbjct: 195 EQTPLSALFYAHLAKLAGVPDGVINVVTGFGPTA---GAAIASHMDVDKVSFTGSTEVGR 251
Query: 259 KILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQ 318
KI+ + + +K++SLELGG +P +++ +A++ AV A+ F N G+ CVA++R +Q
Sbjct: 252 KIMQAAATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQ 311
Query: 319 EQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
E ++D+FV+ L VE K ++ GD + + GP ++ Q EK+ S ++ +GA ++
Sbjct: 312 EGIYDEFVKKL-VEKAKDWVVGDPF-DPRARQGPQVDKQQFEKILSYIEHGKREGATLLT 369
Query: 379 GGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLA 438
GG G + PTI T++T DM +E+FGPV +KFKT EE++ ANN+ GLA
Sbjct: 370 GGKPCGDKGY-YIEPTIFTDVTEDMKIAQDEIFGPVMSLMKFKTVEEAIKKANNTKYGLA 428
Query: 439 GYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQI 498
T D+ A V + ++ G + +N + FGG K SG GR+ ++++ Q+
Sbjct: 429 AGIVTKDLDVANTVSRSIRAGTIWVNCYFAFDPDCPFGGYKMSGFGRDQGMDALDKYLQV 488
Query: 499 K 499
K
Sbjct: 489 K 489
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 324 bits (833), Expect = e-105
Identities = 164/468 (35%), Positives = 239/468 (51%), Gaps = 33/468 (7%)
Query: 40 HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKE 99
+ V P E LA VP DV+ A A+ A W+ T +ER VL R+
Sbjct: 29 AAGPTREVTAPFTGEPLATVPVSTAADVEAAFARARAAQRAWAATPVRERAAVLLRFHDL 88
Query: 100 LEGNKQALAEIMTQESGKPPTESLGEVV--------YANSFVDWFSEEARRTYGELVPSP 151
+ N++ L +++ E+GK + EV+ YA + R +P
Sbjct: 89 VLENREELLDLVQLETGKARRHAFEEVLDVALTARYYARRAPKLLAPRRRAG---ALPVL 145
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAA 211
K+ EL R+P GVVG+I+PWN+P+ + PAL AG V+KP TPLTALA
Sbjct: 146 TKTTEL---RQPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTPLTALAAVE 202
Query: 212 LAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKR 271
L +EA +P+ + VVT VG L + + FTGST G++L +R
Sbjct: 203 LLYEAGLPRDLWQVVTGPGP---VVGTAL--VDNADYLMFTGSTATGRVLAEQAG---RR 254
Query: 272 L---SLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEM 328
L SLELGG P IV +A+L KA +GA+ A F N GQ C++ R + E ++D+FV
Sbjct: 255 LIGFSLELGGKNPMIVLDDADLDKAAAGAVRACFSNAGQLCISIERIYVHESIYDEFVRA 314
Query: 329 LKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGS 388
V ++ G + ++G LI+ AQ+E V + V DA++KGA V+ GG LG
Sbjct: 315 F-VAAVRAMRLG-AGYDYSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGP 372
Query: 389 KFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQ 448
F+ PT+LT +TPDM EE FGPV +E++ AN++ GL +T D ++
Sbjct: 373 LFYEPTVLTGVTPDMELAREETFGPVVSVYPVADVDEAVERANDTPYGLNASVWTGDTAR 432
Query: 449 AWRVGKKLQVGMVGINEGIIS---HTEAAFGGVKESGLGREGSRHGME 493
+ +++ G V +NEG + +A GG+K+SGLGR RHG E
Sbjct: 433 GRAIAARIRAGTVNVNEGYAAAWGSVDAPMGGMKDSGLGR---RHGAE 477
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 321 bits (824), Expect = e-104
Identities = 168/481 (34%), Positives = 266/481 (55%), Gaps = 17/481 (3%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFE--QWSQTT 85
Q +INGE+V K + NP + + V VEDV A+ +AKEAFE +W +
Sbjct: 6 HQLFINGEFVDAEGGKTYNTINPTDGSVICKVSLATVEDVDRAVAAAKEAFENGEWGKMN 65
Query: 86 PKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTY 144
++RG ++ R +E +++ LA I + +SG T +L V + +F+ +
Sbjct: 66 ARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQ 125
Query: 145 GELVP-SPVKSKELLMV--REPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAED 201
G+ +P + + L + REP+GV G++ PWN+P+ M+ K+A LAAG T V+KPA+
Sbjct: 126 GKTIPINQARPNRNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPAQV 185
Query: 202 TPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGK-I 260
TPLTAL A L +A PKGV+N++ S + VG+ L P V + FTGST +GK I
Sbjct: 186 TPLTALKFAELTVKAGFPKGVINILPGSGSL---VGQRLSDHPDVRKLGFTGSTPIGKHI 242
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ S +K++SLELGG +P I++++ ++ KAV M++ F N G+ C+AA R ++E
Sbjct: 243 MKSCAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVEES 302
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
+ D+FV + E+ K I GD + GP + A ++K+ + + +GA ++ GG
Sbjct: 303 IHDEFVRRVVEEVKKMKI-GDPLDRST-DHGPQNHKAHLDKLVEYCERGVKEGATLVYGG 360
Query: 381 GKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE--EESLCVANNSNTGLA 438
+V + G FF PT+ T++ M EE FGP+ + KF + L AN++ GLA
Sbjct: 361 KQVDRPGF-FFEPTVFTDVEDHMFIAKEESFGPIMIISKFDDGDVDGVLQRANDTEYGLA 419
Query: 439 GYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQI 498
FT DI++A V KL+ G V +N + A FGG K+SG G++ + E+ +
Sbjct: 420 SGVFTKDINKALYVSDKLEAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEEALNEYLKT 479
Query: 499 K 499
K
Sbjct: 480 K 480
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 322 bits (826), Expect = e-104
Identities = 182/479 (37%), Positives = 264/479 (55%), Gaps = 17/479 (3%)
Query: 29 YTQAYINGEWVH--SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQT 84
YTQ ING++V S K FP +P E +A V + EDV A+ +A++AF++ W +
Sbjct: 57 YTQLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKM 116
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRT 143
T ER +L R+ LE + LA + T ++GKP +S E+ +++ A +
Sbjct: 117 TAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAGWADKI 176
Query: 144 YGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTP 203
+G VP+ + + EP+GV G I PWNFP+ M KV PALA G T V+K AE TP
Sbjct: 177 HGLTVPAD-GPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTP 235
Query: 204 LTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYS 263
L+AL A L HEA +P GVLNVV+ A G L + V ++FTGST GKI+
Sbjct: 236 LSALYAAKLLHEAGLPPGVLNVVSGFGPTA---GAALASHMDVDKLAFTGSTDTGKIVLE 292
Query: 264 HCSQG-IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
++ +K ++LELGG +PFIV +A++ KAV A A F N GQ C A +R + E+V+
Sbjct: 293 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVY 352
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D+FVE K K + GD K GP I+ Q EK+ ++ + GA + GG
Sbjct: 353 DEFVEKAKARALKRVV-GDPFKKG-VEQGPQIDSEQFEKILRYIKSGVESGATLECGGD- 409
Query: 383 VTKLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
+ GSK + PT+ +N+ DML +E+FGPV +KFK +E + ANN+ GLA
Sbjct: 410 --RFGSKGYYIQPTVFSNVQDDMLIAQDEIFGPVQSILKFKDLDEVIRRANNTRYGLAAG 467
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
FT ++ A + + L+VG V +N + FGG K SG+GRE + + + Q+K
Sbjct: 468 VFTQNLDTANTLSRALRVGTVWVNCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQVK 526
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 317 bits (814), Expect = e-103
Identities = 155/458 (33%), Positives = 235/458 (51%), Gaps = 33/458 (7%)
Query: 50 PANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAE 109
P E L ++P DV+ A A+ A W+ ER V R+ + + L +
Sbjct: 3 PFTGEPLGELPQSTPADVEAAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDELLD 62
Query: 110 IMTQESGKPPTESLGEVV--------YANSFVDWFSEEARRTYGELVPSPVKSKELLMVR 161
++ E+GK + EV+ YA RR +P ++ R
Sbjct: 63 LIQLETGKARRHAFEEVLDVAIVARYYARRAERLLKPRRRRG---AIPVLTRTTVN---R 116
Query: 162 EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKG 221
P GVVG+I+PWN+P+ + PAL AG V+KP T LTAL L EA +P+
Sbjct: 117 RPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTALTALWAVELLIEAGLPRD 176
Query: 222 VLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRL---SLELGG 278
+ VVT + VG + + + FTGST G+++ +RL SLELGG
Sbjct: 177 LWQVVTGP---GSEVGGAIVD--NADYVMFTGSTATGRVVAERAG---RRLIGCSLELGG 228
Query: 279 NAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFI 338
P IV +A+L KA +GA+ A F N GQ CV+ R + E V+D+FV V T++
Sbjct: 229 KNPMIVLEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDEFVRRF-VARTRALR 287
Query: 339 QGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTN 398
G + + ++G LI+ AQ+++V + V DA++KGA V+ GG LG F+ PT+LT
Sbjct: 288 LG-AALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFYEPTVLTG 346
Query: 399 ITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQV 458
+T DM + EE FGPV + ++E++ +AN+++ GL +T D ++ R+ +L+
Sbjct: 347 VTEDMELFAEETFGPVVSIYRVADDDEAIELANDTDYGLNASVWTRDGARGRRIAARLRA 406
Query: 459 GMVGINEGIIS---HTEAAFGGVKESGLGREGSRHGME 493
G V +NEG + +A GG+K+SGLGR RHG E
Sbjct: 407 GTVNVNEGYAAAWASIDAPMGGMKDSGLGR---RHGAE 441
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 317 bits (813), Expect = e-103
Identities = 161/461 (34%), Positives = 243/461 (52%), Gaps = 19/461 (4%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQA 106
V NPA + LA VP DV A+ +A+ AF +W TTP ER +L+ L + +
Sbjct: 1 VINPATGQVLARVPAASAADVDRAVAAARAAFPEWRATTPLERARMLRELATRLREHAEE 60
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLM-VREPLG 165
LA I + G P + LG+V+ A + +D+F+ GE +P ++ L +REP G
Sbjct: 61 LALIDALDCGNPVSAMLGDVMVAAALLDYFAGLVTELKGETIPVGGRN--LHYTLREPYG 118
Query: 166 VVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNV 225
VV I +N P+ K+A LAAG T V+KP E PL+AL LA LA E +P GV N+
Sbjct: 119 VVARIVAFNHPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSALRLAELAREV-LPPGVFNI 177
Query: 226 VTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVY 285
+ A G L P V I+ GS G+ + ++GIK ++LELGG IV+
Sbjct: 178 LPGDGATA---GAALVRHPDVKRIALIGSVPTGRAIMRAAAEGIKHVTLELGGKNALIVF 234
Query: 286 SNANLQKAVSGAMAA-KFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK 344
+A+ + A A+A F CGQ+C + +R + E ++D+ + + VE + GD +
Sbjct: 235 PDADPEAAADAAVAGMNFTWCGQSCGSTSRLFVHESIYDEVLARV-VERVAAIKVGDPT- 292
Query: 345 NDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKV-TKLGSK--FFAPTILTNITP 401
+ +GPL++ Q ++V + A +GA+++ GGG+ + PT+ ++TP
Sbjct: 293 DPATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVTP 352
Query: 402 DMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMV 461
M EE+FGPV ++++ E E + AN GL +TNDISQA R ++++ G V
Sbjct: 353 GMRIAREEIFGPVLSVLRWRDEAEMVAQANGVEYGLTAAIWTNDISQAHRTARRVEAGYV 412
Query: 462 GINEGIISHTEAAFGGVKESGLGREGSRHGMEE---FTQIK 499
IN A FGGVK SG+GRE +EE +TQ K
Sbjct: 413 WINGSSRHFLGAPFGGVKNSGIGRE---ECLEELLSYTQEK 450
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 316 bits (812), Expect = e-103
Identities = 161/481 (33%), Positives = 247/481 (51%), Gaps = 20/481 (4%)
Query: 30 TQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
+ +INGEWV S + VYNPA E +A VP E+V A+ +AK AF WS T
Sbjct: 1 LKLFINGEWVESKTTEWLDVYNPATGEVIARVPLATAEEVDAAVAAAKAAFPAWSATPVL 60
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
+R V+ ++ + LE N LA ++T E GK ++ G+V+ V++ GE
Sbjct: 61 KRQQVMFKFRQLLEENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSIPHLLKGEY 120
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITR-KVAPALAAGCTCVIKPAEDTPLTA 206
+ + + + R+PLGVV ITP+NFP AMI A+A G T V+KP+E P A
Sbjct: 121 LENVARGIDTYSYRQPLGVVAGITPFNFP-AMIPLWMFPMAIACGNTFVLKPSERVPGAA 179
Query: 207 LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS 266
+ LA L EA +P GVLNVV + N+ L P + +SF GST VG+ +Y +
Sbjct: 180 MRLAELLQEAGLPDGVLNVVHGGKEAVNA----LLDHPDIKAVSFVGSTPVGEYIYERAA 235
Query: 267 QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFV 326
KR+ G +V +A+L++ + + A F GQ C+A + + D+++
Sbjct: 236 ANGKRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEADEWI 295
Query: 327 EMLKVEITKSFI-QGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTK 385
L K + GD D +GP+I+ A E+++ +++ + +GAK++L G V
Sbjct: 296 PKLVERAKKLKVGAGDDPGAD---MGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKV 352
Query: 386 LGSK---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFF 442
G + F PTIL N+TPDM Y EE+FGPV ++ T +E++ + N + G F
Sbjct: 353 PGYENGNFVGPTILDNVTPDMKIYKEEIFGPVLSIVRVDTLDEAIAIINANPYGNGAAIF 412
Query: 443 TNDISQAWRVGKKLQVGMVGINEGIISHTEA-AFGGVKESGLGREGSRHGMEE---FTQI 498
T + A + +++ GMVGIN I +FGG K S G + +G + +TQ
Sbjct: 413 TRSGAAARKFQREVDAGMVGINVPIPVPLAFFSFGGWKGSFFG-DLHFYGKDGVRFYTQT 471
Query: 499 K 499
K
Sbjct: 472 K 472
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 305 bits (784), Expect = e-100
Identities = 120/258 (46%), Positives = 162/258 (62%), Gaps = 3/258 (1%)
Query: 73 SAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSF 132
+A+ AF+ W+ P ER +L++ LE ++ LA + T E+GKP E+LGEV A
Sbjct: 2 AARAAFKAWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVARAIDT 61
Query: 133 VDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGC 192
+ + A + G +PSP E + REPLGVVG+ITPWNFP+ + K+APALAAG
Sbjct: 62 FRYAAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAGN 121
Query: 193 TCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFT 252
T V+KP+E TPLTALALA L EA +P GV+NVV + VG L + P V ISFT
Sbjct: 122 TVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGG---GDEVGAALLSHPRVDKISFT 178
Query: 253 GSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAA 312
GST VGK + ++ +K ++LELGG +P IV +A+L AV GA+ F N GQ C AA
Sbjct: 179 GSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQICTAA 238
Query: 313 NRFLIQEQVFDQFVEMLK 330
+R L+ E ++D+FVE L
Sbjct: 239 SRLLVHESIYDEFVEKLV 256
Score = 132 bits (335), Expect = 2e-34
Identities = 51/107 (47%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Query: 394 TILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVG 453
T+L ++ PDM EE+FGPV I+FK EEE++ +AN++ GL FT D+++A RV
Sbjct: 257 TVLVDVDPDMPIAQEEIFGPVLPVIRFKDEEEAIALANDTEYGLTAGVFTRDLNRALRVA 316
Query: 454 KKLQVGMVGINEG-IISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
++L+ G V IN+ I EA FGGVK SG+GREG +G+EE+T+ K
Sbjct: 317 ERLRAGTVYINDSSIGVGPEAPFGGVKNSGIGREGGPYGLEEYTRTK 363
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 303 bits (779), Expect = 3e-98
Identities = 141/454 (31%), Positives = 225/454 (49%), Gaps = 8/454 (1%)
Query: 48 YNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQAL 107
+P + +A+ P +E V+ A+ A+ A + W +ER ++ R ++ L N +
Sbjct: 1 ISPIDGSVIAERPLASLEAVRAALERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEI 60
Query: 108 AEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVV 167
AE +T + G+P ++ GE+ + A ++ E + REPLGVV
Sbjct: 61 AEELTWQMGRPIAQAGGEIRGMLERARYMISIAEEALADIRVPEKDGFERYIRREPLGVV 120
Query: 168 GLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVT 227
+I PWN+P V PAL AG ++K + TPL AA EA +P+GV V+
Sbjct: 121 LIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQVLH 180
Query: 228 SSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSN 287
S + L P + +SFTGS G+ + + ++ LELGG P V +
Sbjct: 181 LS----HETSAALIADPRIDHVSFTGSVAGGRAIQRAAAGRFIKVGLELGGKDPAYVRPD 236
Query: 288 ANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDK 347
A+L A + F N GQ+C + R + E ++D FVE V + K + GD
Sbjct: 237 ADLDAAAESLVDGAFFNSGQSCCSIERIYVHESIYDAFVEAF-VAVVKGYKLGDPLDPST 295
Query: 348 CNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK--VTKLGSKFFAPTILTNITPDMLC 405
LGP+++ + V + + DAI+KGA+ ++ G K G + APT+LTN+ M
Sbjct: 296 -TLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDHSMRV 354
Query: 406 YTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINE 465
EE FGPV +K K++ E++ + N+S GL +T DI++A +G++L+ G V +N
Sbjct: 355 MREETFGPVVGIMKVKSDAEAIALMNDSEYGLTASVWTKDIARAEALGEQLETGTVFMNR 414
Query: 466 GIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
A+ GVK+SG G SR G ++ T+ K
Sbjct: 415 CDYLDPALAWTGVKDSGRGVTLSRLGYDQLTRPK 448
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 305 bits (783), Expect = 4e-98
Identities = 157/466 (33%), Positives = 239/466 (51%), Gaps = 25/466 (5%)
Query: 33 YINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
I G+ V + +K NPA+ E L V E+ + A+ +A+ AF W +T P+ER
Sbjct: 36 VIGGKEVRTEEKIESRNPADPSEVLGTVQKATKEEAEAAVQAARAAFPTWRRTPPEERAR 95
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP 151
+L R L + LA M E GK E+ +V A F+++++ E R
Sbjct: 96 LLLRAAALLRRRRFELAAWMVLEVGKNWAEADADVAEAIDFLEYYAREMLR-LRGFPVEM 154
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAA 211
V ++ V PLGV +I+PWNFP+A++ AL G T V+KPAEDTP+ A L
Sbjct: 155 VPGEDNRYVYRPLGVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTPVIAAKLVE 214
Query: 212 LAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG--- 268
+ EA +P GV+N + VG L P V I+FTGS +VG +Y ++
Sbjct: 215 ILEEAGLPPGVVNFLPGP---GEEVGDYLVEHPDVRFIAFTGSREVGLRIYERAAKVQPG 271
Query: 269 ---IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQF 325
+KR+ E+GG IV +A+L +A G + + F GQ C A +R ++ E V+D+F
Sbjct: 272 QKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVIVHESVYDEF 331
Query: 326 VEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTK 385
+E L VE TK+ GD + +GP+I+ +++ ++ S+G +++LGG V +
Sbjct: 332 LERL-VERTKALKVGDPEDPE-VYMGPVIDKGARDRIRRYIEIGKSEG-RLLLGGE-VLE 387
Query: 386 LGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT 443
L ++ F PTI ++ PD EE+FGPV IK K +E+L +AN++ GL G F+
Sbjct: 388 LAAEGYFVQPTIFADVPPDHRLAQEEIFGPVLAVIKAKDFDEALEIANDTEYGLTGGVFS 447
Query: 444 NDISQAWRVGKKLQVGMVGINEGIISHTEA-----AFGGVKESGLG 484
R ++ +VG + N I T A FGG K SG G
Sbjct: 448 RSPEHLERARREFEVGNLYANRKI---TGALVGRQPFGGFKMSGTG 490
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 299 bits (766), Expect = 3e-96
Identities = 172/475 (36%), Positives = 255/475 (53%), Gaps = 12/475 (2%)
Query: 31 QAYINGEWVHSS-KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKER 89
+ INGE V +K PVYNPA E + ++ + E V A+ +A AF +W QTTPK R
Sbjct: 3 KLLINGELVSGEGEKQPVYNPATGEVILEIAEASAEQVDAAVRAADAAFAEWGQTTPKAR 62
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVD---WFSEEARRTYGE 146
L + +E N Q AE+ ++ GKP + + A VD +F+ AR G
Sbjct: 63 AECLLKLADVIEENAQVFAELESRNCGKPLHSVFNDEIPA--IVDVFRFFAGAARCLSGL 120
Query: 147 LVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA 206
++ ++ R+PLGVV I PWN+P+ M K+APALAAG V+KP+E TPLTA
Sbjct: 121 AAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTA 180
Query: 207 LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS 266
L LA LA + P GV+N++ +VG L V +S TGS G+ + SH +
Sbjct: 181 LKLAELAKDI-FPAGVVNILFG---RGKTVGDPLTGHEKVRMVSLTGSIATGEHILSHTA 236
Query: 267 QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFV 326
IKR +ELGG AP IV+ +A++ V G F N GQ C AA R Q ++D V
Sbjct: 237 PSIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQRGIYDTLV 296
Query: 327 EMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKL 386
E L + + ++ ++ LGPL +LA +E+V V++A + G ++ GG+ K
Sbjct: 297 EKLGAAV--ATLKSGAPDDESTELGPLSSLAHLERVMKAVEEAKALGHIKVITGGEKRKG 354
Query: 387 GSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDI 446
+FAPT+L D +EVFGPV F EE+ + AN+S GLA +T D+
Sbjct: 355 NGYYFAPTLLAGAKQDDAIVQKEVFGPVVSITSFDDEEQVVNWANDSQYGLASSVWTKDV 414
Query: 447 SQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYM 501
+A R+ +LQ G +N + +E GG K SG G++ S +G+E++T ++++
Sbjct: 415 GRAHRLSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHI 469
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 295 bits (758), Expect = 9e-96
Identities = 143/411 (34%), Positives = 230/411 (55%), Gaps = 7/411 (1%)
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPV 152
L++ + ++ ++ +E GK + EV + ++D+ +E ARR GE++ S
Sbjct: 1 LRKIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDR 60
Query: 153 KSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAAL 212
+ +L+ + LGV I PWNFP +I RK+APAL G T VIKP+E TP A+A A +
Sbjct: 61 PGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKI 120
Query: 213 AHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRL 272
E +PKGV N+V +VG+ L +P VA +S TGS G+ + + ++ I ++
Sbjct: 121 VDEIGLPKGVFNLVLGR---GETVGQELAGNPKVAMVSMTGSVSAGEKIMAAAAKNITKV 177
Query: 273 SLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVE 332
LELGG AP IV +A+L AV + ++ N GQ C A R +Q+ ++DQFV L E
Sbjct: 178 CLELGGKAPAIVMDDADLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRL-GE 236
Query: 333 ITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFA 392
++ G+ ++ + +GPLIN A +E+V+ V A+ +GA+V LGG V G ++
Sbjct: 237 AMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGY-YYP 295
Query: 393 PTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRV 452
PT+L ++ +M EE FGPV + F T EE++ +AN+S+ GL +T +++ A +
Sbjct: 296 PTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEAIAMANDSDYGLTSSIYTQNLNVAMKA 355
Query: 453 GKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEF--TQIKYM 501
K L+ G IN + G ++SG+G +HG+ E+ TQ+ Y+
Sbjct: 356 IKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQVVYL 406
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 290 bits (745), Expect = 6e-93
Identities = 162/487 (33%), Positives = 241/487 (49%), Gaps = 30/487 (6%)
Query: 30 TQAYINGEWVH-SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--WSQTTP 86
++ I+G+ V S+ FP NPA +E L D D+ AI +A+ AF++ WS+ T
Sbjct: 1 SRLLIDGKLVAGSAGTFPTVNPATEEVLGVAADATAADMDAAIAAARRAFDETDWSRDT- 59
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKP-----------PTESLGEVVYANSFVDW 135
R L++ L + + L E+ E G P P + LG W
Sbjct: 60 ALRVRCLRQLRDALRAHVEELRELTIAEVGAPRMLTAGAQLEGPVDDLGFAADLAESYAW 119
Query: 136 FSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCV 195
G P + ++ L RE +GVVG ITPWNFP + K+ PALAAG T V
Sbjct: 120 -----TTDLGVASPMGIPTRRTL-RREAVGVVGAITPWNFPHQINLAKLGPALAAGNTVV 173
Query: 196 IKPAEDTPLTALALAAL-AHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGS 254
+KPA DTP A L L A P GV+N+VTSS + +G LL P V +SFTGS
Sbjct: 174 LKPAPDTPWCAAVLGELIAEHTDFPPGVVNIVTSSD---HRLGALLAKDPRVDMVSFTGS 230
Query: 255 TQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANR 314
T G+ + + + +K++ LELGG + FIV +A+L A S A + GQ C R
Sbjct: 231 TATGRAVMADAAATLKKVFLELGGKSAFIVLDDADLAAACSMAAFTVCMHAGQGCAITTR 290
Query: 315 FLIQEQVFDQFVEMLKVEITKSFIQGD-TSKNDKCNLGPLINLAQVEKVDSIVQDAISKG 373
++ +D+ V S GD C GP+I+ Q ++V S + A+++G
Sbjct: 291 LVVPRARYDEAVAAA-AATMGSIKPGDPADPGTVC--GPVISARQRDRVQSYLDLAVAEG 347
Query: 374 AKVILGGGKVTKLGSKFFA-PTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANN 432
+ GGG+ FF PT++ + + EE+FGPV I +++++ +AN+
Sbjct: 348 GRFACGGGRPADRDRGFFVEPTVIAGLDNNARVAREEIFGPVLTVIAHDGDDDAVRIAND 407
Query: 433 SNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGM 492
S GL+G F D +A V +++ G V +N G+ +A FGG K+SG+GRE G
Sbjct: 408 SPYGLSGTVFGADPERAAAVAARVRTGTVNVNGGVWYSADAPFGGYKQSGIGREMGVAGF 467
Query: 493 EEFTQIK 499
EE+ + K
Sbjct: 468 EEYLETK 474
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 288 bits (739), Expect = 4e-92
Identities = 170/485 (35%), Positives = 256/485 (52%), Gaps = 29/485 (5%)
Query: 33 YINGEWVHSSKK--FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+I GEWV K F P + +VP ED++ A+ +A A E W +T+ ER
Sbjct: 4 FIGGEWVAPVKGEYFDNITPVTGKVFCEVPRSTAEDIELALDAAHAAKEAWGKTSVAERA 63
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYGELVP 149
+L + +E N + LA T ++GKP E+L ++ A +F+ R G +
Sbjct: 64 NILNKIADRMEANLEMLAVAETWDNGKPVRETLAADIPLAIDHFRYFAGCIRAQEGSI-- 121
Query: 150 SPVKSKEL-LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
S + + EPLGVVG I PWNFP+ M T K+APALAAG V+KPAE TP + L
Sbjct: 122 SEIDENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPASILV 181
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG 268
L L + +P GV+NVV A GK L +S +A ++FTG T G+++ + S+
Sbjct: 182 LMELIGDL-LPPGVVNVVNGFGLEA---GKPLASSKRIAKVAFTGETTTGRLIMQYASEN 237
Query: 269 IKRLSLELGGNAPFIVYS------NANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
I ++LELGG +P I ++ +A KA+ G + N G+ C +R LIQE ++
Sbjct: 238 IIPVTLELGGKSPNIFFADVMDADDAFFDKALEGFVMFAL-NQGEVCTCPSRALIQESIY 296
Query: 323 DQFVEMLKVEITKSFIQG---DTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILG 379
D+F+E +E K+ QG DT +G +L Q+EK+ S + +GA+V+ G
Sbjct: 297 DRFME-RALERVKAIKQGNPLDTE----TMIGAQASLEQLEKILSYIDIGKEEGAEVLTG 351
Query: 380 GGKVT---KLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTG 436
G + LG ++ PT M + EE+FGPV FK EEE+L +AN++ G
Sbjct: 352 GERNELGGLLGGGYYVPTTFKG-GNKMRIFQEEIFGPVLAVTTFKDEEEALEIANDTLYG 410
Query: 437 LAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFT 496
L +T D + A+R+G+ +Q G V N + AAFGG K+SG+GRE + ++ +
Sbjct: 411 LGAGVWTRDGNTAYRMGRGIQAGRVWTNCYHLYPAHAAFGGYKQSGIGRENHKMMLDHYQ 470
Query: 497 QIKYM 501
Q K +
Sbjct: 471 QTKNL 475
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 286 bits (734), Expect = 1e-91
Identities = 158/456 (34%), Positives = 231/456 (50%), Gaps = 15/456 (3%)
Query: 49 NPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALA 108
NPA E + + ++V AI A F + TT +R LE +A
Sbjct: 7 NPATGETVKTFTALTDDEVDAAIARAHARFRDYRTTTFAQRARWANAAADLLEAEADQVA 66
Query: 109 EIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP-----VKSKELLMVREP 163
+MT E GK + E + +++E A L P V + + +P
Sbjct: 67 ALMTLEMGKTLASAKAEALKCAKGFRYYAEHAEAL---LADEPADAAAVGASRAYVRYQP 123
Query: 164 LGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL 223
LGVV + PWNFP+ + R APAL AG ++K A + P TAL LA L A P G
Sbjct: 124 LGVVLAVMPWNFPLWQVVRFAAPALMAGNVGLLKHASNVPQTALYLADLFRRAGFPDGCF 183
Query: 224 NVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFI 283
+ + +V +L P VA + TGS G+ + + IK+ LELGG+ PFI
Sbjct: 184 QTLLVG---SGAVEAIL-RDPRVAAATLTGSEPAGRAVAAIAGDEIKKTVLELGGSDPFI 239
Query: 284 VYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTS 343
V +A+L +A A+ A+ +N GQ+C+AA RF++ V+D F E V + GD +
Sbjct: 240 VMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVHADVYDAFAEKF-VARMAALRVGDPT 298
Query: 344 KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDM 403
+ ++GPL ++V+ V DA++ GA ++ GG + G F+ PT++T+ITPDM
Sbjct: 299 -DPDTDVGPLATEQGRDEVEKQVDDAVAAGATILCGGKRPDGPGW-FYPPTVITDITPDM 356
Query: 404 LCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGI 463
YTEEVFGPVA + +E++ +AN + GL +T D ++ R L+ G V I
Sbjct: 357 RLYTEEVFGPVASLYRVADIDEAIEIANATTFGLGSNAWTRDEAEQERFIDDLEAGQVFI 416
Query: 464 NEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
N +S+ E FGGVK SG GRE S HG+ EF IK
Sbjct: 417 NGMTVSYPELPFGGVKRSGYGRELSAHGIREFCNIK 452
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 282 bits (724), Expect = 7e-90
Identities = 148/474 (31%), Positives = 241/474 (50%), Gaps = 29/474 (6%)
Query: 48 YNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQAL 107
Y+PA +HL VP EDV AI +A+ A +W++T+ ER VL+ LK + N++ +
Sbjct: 1 YDPATGQHLGSVPADTPEDVDEAIAAARAAQREWAKTSFAERRKVLRSLLKYILENQEEI 60
Query: 108 AEIMTQESGKPPTE-SLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVR----- 161
+ +++GK + SLGE++ + W + + L P L+ +
Sbjct: 61 CRVACRDTGKTMVDASLGEILVTCEKIRWTLKHGEKA---LRPESRPGGLLMFYKRARVE 117
Query: 162 -EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT-----PLTALALAALAHE 215
EPLGVVG I WN+P + + AL AG V+K +E ++ LA
Sbjct: 118 YEPLGVVGAIVSWNYPFHNLLGPIIAALFAGNAIVVKVSEQVAWSSGFFLSIIRECLAAC 177
Query: 216 AQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLE 275
P V V T + L + P + I+F GS VGK + + ++ + + LE
Sbjct: 178 GHDPDLVQLVTCLPET-----AEALTSHPVIDHITFIGSPPVGKKVMAAAAESLTPVVLE 232
Query: 276 LGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITK 335
LGG P IV +A+L + S M F++ GQ C+ R ++ E+++D+ +E+L + +
Sbjct: 233 LGGKDPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYDKLLEILT-DRVQ 291
Query: 336 SFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK----FF 391
+ QG D ++G +I+ A+ ++++ +V DA+ KGA+ +L GGK +F
Sbjct: 292 ALRQGPPLDGD-VDVGAMISPARFDRLEELVADAVEKGAR-LLAGGKRYPHPEYPQGHYF 349
Query: 392 APTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWR 451
PT+L ++TPDM EEVFGPV V +K +EE++ +AN++ GL F DI +A R
Sbjct: 350 PPTLLVDVTPDMKIAQEEVFGPVMVVMKASDDEEAVEIANSTEYGLGASVFGKDIKRARR 409
Query: 452 VGKKLQVGMVGINEGIISHTEAA--FGGVKESGLGREGSRHGMEEFTQIKYMCF 503
+ +L+ GMV IN+ +++ FGGVK SG GR G+ K +
Sbjct: 410 IASQLETGMVAINDFGVNYYVQQLPFGGVKGSGFGRFAGEEGLRGLCNPKSVTE 463
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 281 bits (721), Expect = 1e-89
Identities = 153/452 (33%), Positives = 252/452 (55%), Gaps = 10/452 (2%)
Query: 49 NPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALA 108
NPA E L+ +P G +D++ A+ A F W +T R L+ K L + +A
Sbjct: 13 NPATGEQLSVLPWAGADDIENALQLAAAGFRDWRETNIDYRAQKLRDIGKALRARSEEMA 72
Query: 109 EIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVG 168
+++T+E GKP ++ EV + + DW++E + P+ V++++ ++ PLG +
Sbjct: 73 QMITREMGKPINQARAEVAKSANLCDWYAEHGPAML-KAEPTLVENQQAVIEYRPLGTIL 131
Query: 169 LITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTS 228
I PWNFP+ + R P L AG ++K A + A +A + +A IP+GV +
Sbjct: 132 AIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYGWL-- 189
Query: 229 SRTNANSVG-KLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSN 287
NA++ G + +A ++ TGS + G + + +K+ LELGG+ PFIV ++
Sbjct: 190 ---NADNDGVSQMINDSRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFIVLND 246
Query: 288 ANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDK 347
A+L+ AV A+A +++N GQ C AA RF+I+E + F E V + GD ++++
Sbjct: 247 ADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERF-VAAAAALKMGD-PRDEE 304
Query: 348 CNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYT 407
LGP+ +++ V+ +++GA+++LGG K+ G+ ++APT+L N+TP+M +
Sbjct: 305 NALGPMARFDLRDELHHQVEATLAEGARLLLGGEKIAGAGN-YYAPTVLANVTPEMTAFR 363
Query: 408 EEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGI 467
EE+FGPVA K E +L +AN+S GL+ FT D +QA ++ +L+ G V IN
Sbjct: 364 EELFGPVAAITVAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVFINGYC 423
Query: 468 ISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
S AFGGVK+SG GRE S G+ EF I+
Sbjct: 424 ASDARVAFGGVKKSGFGRELSHFGLHEFCNIQ 455
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 274 bits (703), Expect = 7e-87
Identities = 168/474 (35%), Positives = 259/474 (54%), Gaps = 23/474 (4%)
Query: 34 INGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVL 93
I GE V + V P N + VP V+DV+ A A A+ T ER +L
Sbjct: 8 IAGEKVSRDRVIEVRYPYNGTVVGTVPKASVDDVRRAFAIAA-AYR--PTLTRYERSAIL 64
Query: 94 KRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGE-----LV 148
R L K+ +++++T ESG +SL EV + + + EA R G+ L
Sbjct: 65 DRAAALLAARKEEISDLITLESGLSKKDSLYEVGRVADVLTFAAAEALRDDGQIFSCDLT 124
Query: 149 PSPVKSKELLMVREPL-GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
P K++++ REPL GV+ ITP+N PM + K+APA+A V+KP+E TPL+AL
Sbjct: 125 PHG-KARKVFTQREPLLGVISAITPFNHPMNQVAHKIAPAIATNNRMVVKPSEKTPLSAL 183
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
LA + +EA +P +L VVT + + L T+PHV ++FTG +GK + +
Sbjct: 184 YLADILYEAGLPPQMLQVVTG---DPREIADELITNPHVDLVTFTGGVAIGKYIAARA-- 238
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
G +R LELGGN P IV +A+L +A A+ ++N GQ C A R L+QE V D+F E
Sbjct: 239 GYRRQVLELGGNDPLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLVQESVADRFTE 298
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
+L VE T+++ GD + ++G +I+ A ++ V +AI++GA+++LG + L
Sbjct: 299 LL-VEKTRAWRYGDPM-DPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLGNVRDGAL- 355
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
+APT+L + P M EE FGPV+ I+F ++++ ++N++ GL+ TN +
Sbjct: 356 ---YAPTVLDRVDPSMTLVREETFGPVSPVIRFCDIDDAIRISNSTAYGLSSGVCTNRLD 412
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKESGLG-REGSRHGMEEFTQIK 499
R +LQVG V + E E FGG+K+SGLG +EG + M+ FT +K
Sbjct: 413 YITRFIAELQVGTVNVWEVPGYRLELTPFGGIKDSGLGYKEGVQEAMKSFTNLK 466
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 269 bits (689), Expect = 4e-84
Identities = 149/469 (31%), Positives = 232/469 (49%), Gaps = 37/469 (7%)
Query: 33 YINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
I GE + + K NPAN E + V E + A+ +A EAFE W + +P++R
Sbjct: 40 IIGGERITTEDKIVSINPANKSEVVGRVSKATKELAEKAMQAALEAFETWKKWSPEDRAR 99
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP 151
+L R + K + + +E+GKP E+ + A F+++++ + + + P
Sbjct: 100 ILLRAAAIIRRRKHEFSAWLVKEAGKPWAEADADTAEAIDFLEYYARQMLK-LAD--GKP 156
Query: 152 VKSKE---LLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
V+S+ PLGV +I+PWNFP A++ A+ AG T ++KPA DTP+ A
Sbjct: 157 VESRPGEHNRYFYIPLGVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAK 216
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS-- 266
+ EA +P GV+N V S + VG L P I+FTGS +VG +Y +
Sbjct: 217 FVEVLEEAGLPAGVVNFVPGS---GSEVGDYLVDHPKTRFITFTGSREVGLRIYERAAKV 273
Query: 267 ----QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+KR+ E+GG +V +A+L A +A+ F GQ C A +R ++ E V+
Sbjct: 274 QPGQIWLKRVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQKCSACSRAIVHEDVY 333
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKG-AKVILGGG 381
D+ +E + VE+TK G+ N +GP+IN A +K+ S ++ I K +++LGG
Sbjct: 334 DEVLEKV-VELTKELTVGNPEDNA--YMGPVINQASFDKIMSYIE--IGKEEGRLVLGGE 388
Query: 382 KVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYF 441
G F PTI ++ P EE+FGPV IK K + +L +ANN+ GL G
Sbjct: 389 GDDSKGY-FIQPTIFADVDPKARIMQEEIFGPVVAFIKAKDFDHALEIANNTEYGLTGAV 447
Query: 442 FTND---ISQAWRVGKKLQVGMVGINEGIISHTEA-----AFGGVKESG 482
+N+ + +A R + VG + N G T A FGG SG
Sbjct: 448 ISNNREHLEKARR---EFHVGNLYFNRGC---TGAIVGYHPFGGFNMSG 490
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 261 bits (669), Expect = 1e-81
Identities = 159/470 (33%), Positives = 230/470 (48%), Gaps = 28/470 (5%)
Query: 33 YINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIV 92
+GEW +PAN E +A V ED + I +A+EAF++W +RG +
Sbjct: 2 VYDGEWGGGGGVVTSISPANGEPIARVRQATPEDYESTIKAAQEAFKEWRDVPAPKRGEI 61
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA----RRTYGELV 148
+++ L K+AL ++++ E GK E LGEV +D + A R+ YG +
Sbjct: 62 VRQIGDALRKKKEALGKLVSLEMGKILPEGLGEV---QEMID-ICDFAVGLSRQLYGLTI 117
Query: 149 PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
PS ++ PLGVVG+IT +NFP+A+ A AL G V KP+ TPLTA+A
Sbjct: 118 PSERPGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPSPTTPLTAIA 177
Query: 209 ----LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
+A + + +P + ++V VG+ L P V +SFTGST VG+ +
Sbjct: 178 VTKIVARVLEKNGLPGAIASLVCGGAD----VGEALVKDPRVPLVSFTGSTAVGRQVGQA 233
Query: 265 CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
+ R LELGGN IV +A+L AV + A GQ C R ++ E ++D+
Sbjct: 234 VAARFGRSLLELGGNNAIIVMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESIYDE 293
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNL-GPLINLAQVEKVDSIVQDAISKGAKVILGGGKV 383
+E LK + K GD + L GPL A V+ + +++A S+G +L GGKV
Sbjct: 294 VLERLK-KAYKQVRIGDPLDDG--TLVGPLHTKAAVDNYLAAIEEAKSQGGT-VLFGGKV 349
Query: 384 TKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT 443
+ PTI+ D EE F P+ +KF T EE++ N GL+ FT
Sbjct: 350 IDGPGNYVEPTIVE-GLSDAPIVKEETFAPILYVLKFDTLEEAIAWNNEVPQGLSSSIFT 408
Query: 444 NDISQA--WRVGKKLQVGMVGINEGIISHTE--AAFGGVKESGLGRE-GS 488
D+ A W K G+V +N G S E AFGG KE+G GRE GS
Sbjct: 409 TDLRNAFRWLGPKGSDCGIVNVNIG-TSGAEIGGAFGGEKETGGGRESGS 457
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 243 bits (621), Expect = 1e-74
Identities = 150/477 (31%), Positives = 234/477 (49%), Gaps = 19/477 (3%)
Query: 33 YINGEWVH--SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+I G++ S PV NPA +E V V++V A+ SA+E F W QT+ +R
Sbjct: 4 WIGGKFAEGASGTYIPVTNPATNEVTTKVAFASVDEVDAAVASARETFLTWGQTSLAQRT 63
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPS 150
VL R+ L+ ++ +AE++T E GK +++LG+V V+ GE
Sbjct: 64 SVLLRYQALLKEHRDEIAELITAEHGKTHSDALGDVARGLEVVEHACGVNSLLKGETSTQ 123
Query: 151 PVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAP-ALAAGCTCVIKPAEDTPLTALAL 209
++ +R+PLGV ITP+NFP AMI + P A+A G T V+KP+E P A+ L
Sbjct: 124 VATRVDVYSIRQPLGVCAGITPFNFP-AMIPLWMFPIAIACGNTFVLKPSEKVPSAAVKL 182
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
A L EA P GVLNVV + + L P V +SF GST +G+ +++ S
Sbjct: 183 AELFSEAGAPDGVLNVVHGDKEAVDR----LLEHPDVKAVSFVGSTPIGRYIHTTGSAHG 238
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
KR+ G +V +A+ A + A + GQ C+A + ++ D++V +
Sbjct: 239 KRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQRCMAISAAVLVGAA-DEWVPEI 297
Query: 330 KVEITKSFIQ-GDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG- 387
+ K I GD + +GPLI ++V S++ ++GA+V+L G G
Sbjct: 298 RERAEKIRIGPGDDPGAE---MGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGY 354
Query: 388 --SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
+ PT+L + P M Y EE+FGPV ++ T EE++ + N S G FT D
Sbjct: 355 EEGNWVGPTLLERVPPTMKAYQEEIFGPVLCVLEADTLEEAIALINASPYGNGTAIFTRD 414
Query: 446 ISQAWRVGKKLQVGMVGINEGI-ISHTEAAFGGVKESGLGREG--SRHGMEEFTQIK 499
+ A R +++VG VG+N I + +F G K+S G + G +T+ K
Sbjct: 415 GAAARRFQHEIEVGQVGVNVPIPVPLPYFSFTGWKDSFFGDHHIYGKQGTHFYTRGK 471
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 241 bits (616), Expect = 4e-74
Identities = 146/468 (31%), Positives = 234/468 (50%), Gaps = 26/468 (5%)
Query: 47 VYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK-ERGIVLKRWLKELEGNKQ 105
V NP + + + +VP + + A+ +A F + P ER +L+R +E
Sbjct: 3 VVNPFDLKPIGEVPTVDWAAIDKALDTAHALFLDRNNWLPAHERIAILERLADLMEERAD 62
Query: 106 ALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP---SPVKSKEL-LMVR 161
LA ++ +E GKP ++ EV A V+ ++E + G +P +P + + R
Sbjct: 63 ELALLIAREGGKPLVDAKVEVTRAIDGVELAADELGQLGGREIPMGLTPASAGRIAFTTR 122
Query: 162 EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKG 221
EP+GVV I+ +N P+ +I +VAPA+AAGC ++KPA TPL+ LA L HEA +P+G
Sbjct: 123 EPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLHEAGLPEG 182
Query: 222 VLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAP 281
V N+V + L T P VA SF GS +VG +L S + G R +LE GG AP
Sbjct: 183 WCQAVPC----ENAVAEKLVTDPRVAFFSFIGSARVGWMLRSKLAPG-TRCALEHGGAAP 237
Query: 282 FIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGD 341
IV +A+L + + F + GQ CV+ R + ++ D F + L + + GD
Sbjct: 238 VIVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVPAEIADDFAQRL-AAAAEKLVVGD 296
Query: 342 -TSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNIT 400
T + + GPLI +V++V+ V +A++ GA+++ GG +L +APT+L +
Sbjct: 297 PTDPDTEV--GPLIRPREVDRVEEWVNEAVAAGARLLCGG---KRLSDTTYAPTVLLDPP 351
Query: 401 PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGM 460
D T+E+FGPV + +E++ AN+ FT D+ A + ++L
Sbjct: 352 RDAKVSTQEIFGPVVCVYSYDDLDEAIAQANSLPVAFQAAVFTKDLDVALKAVRRLDATA 411
Query: 461 VGINEGIISHTE-----AAFGGVKESGLGREGSRHGMEEFTQIKYMCF 503
V +N+ HT F G ++SG G G + M + TQ K
Sbjct: 412 VMVND----HTAFRVDWMPFAGRRQSGYGTGGIPYTMHDMTQEKMAVI 455
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 240 bits (615), Expect = 2e-73
Identities = 136/461 (29%), Positives = 221/461 (47%), Gaps = 16/461 (3%)
Query: 33 YINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
INGE V + K NP + E + V E ++A+ +A +AFE W +T P+ER
Sbjct: 36 VINGERVETENKIVSINPCDKSEVVGTVSKASQEHAEHALQAAAKAFEAWKKTDPEERAA 95
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP 151
+L + + + + ++ +E GKP E+ EV A F+++++ + +
Sbjct: 96 ILFKAAAIVRRRRHEFSALLVKEVGKPWNEADAEVAEAIDFMEYYARQMIELAKGKPVNS 155
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAA 211
+ + V P GV +I+PWNFP A++ + G V+KPAE P+ A
Sbjct: 156 REGETNQYVYTPTGVTVVISPWNFPFAIMVGMTVAPIVTGNCVVLKPAEAAPVIAAKFVE 215
Query: 212 LAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS----- 266
+ EA +PKGV+ V S + VG L P + I+FTGS +VG ++ +
Sbjct: 216 ILEEAGLPKGVVQFVPGS---GSEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPG 272
Query: 267 -QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQF 325
+ +KR+ E+GG IV +A+++ A A + F GQ C A +R ++ E+V+D+
Sbjct: 273 QKHLKRVIAEMGGKDTVIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAVVHEKVYDEV 332
Query: 326 VEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTK 385
VE VEIT+S G D +GP+I+ K+ ++ ++G +++ GG
Sbjct: 333 VERF-VEITESLKVGPPDSAD-VYVGPVIDQKSFNKIMEYIEIGKAEG-RLVSGGCGDDS 389
Query: 386 LGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
G F PTI ++ EE+FGPV I+ +E+L +ANN+ GL G +N+
Sbjct: 390 KGY-FIGPTIFADVDRKARLAQEEIFGPVVAFIRASDFDEALEIANNTEYGLTGGVISNN 448
Query: 446 ISQAWRVGKKLQVGMVGINEGIISHTEA--AFGGVKESGLG 484
R + +VG + N I FGG K SG
Sbjct: 449 RDHINRAKAEFEVGNLYFNRNITGAIVGYQPFGGFKMSGTD 489
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 230 bits (590), Expect = 2e-70
Identities = 132/420 (31%), Positives = 209/420 (49%), Gaps = 36/420 (8%)
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTES--------LGEVVYA-NSFVDWFSEEARRT 143
LK + L N++ +A + + GKPP E+ LGE+ +A W + RR
Sbjct: 26 LKALKRMLTENEEEIAAALYADLGKPPAEAYLTEIAVVLGEIDHALKHLKKWM--KPRRV 83
Query: 144 YGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTP 203
L+ P K+ ++ EPLGVV +I PWN+P+ + + A+AAG T V+KP+E P
Sbjct: 84 SVPLLLQPAKAY---VIPEPLGVVLIIGPWNYPLQLALAPLIGAIAAGNTVVLKPSELAP 140
Query: 204 LTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSP--HVAGISFTGSTQVGKIL 261
T+ LA L + + VV V L P H I FTGS VGKI+
Sbjct: 141 ATSALLAKLIPKY-FDPEAVAVVEG----GVEVATALLAEPFDH---IFFTGSPAVGKIV 192
Query: 262 YSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQV 321
++ + ++LELGG +P IV +ANL+ A KF N GQ C+A + L+ E +
Sbjct: 193 MEAAAKHLTPVTLELGGKSPCIVDKDANLEVAARRIAWGKFLNAGQTCIAPDYVLVHESI 252
Query: 322 FDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGG 381
D+ +E LK I K F D ++ + G +IN +++ S++ D KV++GG
Sbjct: 253 KDELIEELKKAI-KEFYGEDPKESP--DYGRIINERHFDRLASLLDD-----GKVVIGGQ 304
Query: 382 KVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYF 441
++ APTIL +++PD EE+FGP+ + + +E++ N+ LA Y
Sbjct: 305 --VDKEERYIAPTILDDVSPDSPLMQEEIFGPILPILTYDDLDEAIEFINSRPKPLALYL 362
Query: 442 FTNDISQAWRVGKKLQVGMVGINEGII--SHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
F+ D + RV + G V +N+ ++ + FGGV SG+G + G + F+ +K
Sbjct: 363 FSEDKAVQERVLAETSSGGVCVNDVLLHAAIPNLPFGGVGNSGMGAYHGKAGFDTFSHLK 422
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 226 bits (578), Expect = 1e-68
Identities = 136/442 (30%), Positives = 210/442 (47%), Gaps = 43/442 (9%)
Query: 75 KEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTE-SLGEV--VYANS 131
+ +T ER LKR K + ++ + + + KP E L E+ V +
Sbjct: 8 QAHALALRASTAAERIAKLKRLKKAILARREEIIAALAADFRKPAAEVDLTEILPVLS-- 65
Query: 132 FVDWFSEEARRTYGEL--------VPSPV-----KSKELLMVREPLGVVGLITPWNFPMA 178
E L V +P+ KSK + EP GV +I+PWN+P
Sbjct: 66 -------EINHAIKHLKKWMKPKRVRTPLLLFGTKSK---IRYEPKGVCLIISPWNYPFN 115
Query: 179 MITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGK 238
+ + A+AAG T ++KP+E TP T+ +A + EA V + V +
Sbjct: 116 LAFGPLVSAIAAGNTAILKPSELTPHTSAVIAKIIREAFDEDEV-----AVFEGDAEVAQ 170
Query: 239 LLCTSP--HVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSG 296
L P H I FTGS VGKI+ + ++ + ++LELGG +P IV A+L+KA
Sbjct: 171 ALLELPFDH---IFFTGSPAVGKIVMAAAAKHLASVTLELGGKSPTIVDETADLKKAAKK 227
Query: 297 AMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINL 356
KF N GQ C+A + + E V D FVE LK EI K + + K +L ++N
Sbjct: 228 IAWGKFLNAGQTCIAPDYVFVHESVKDAFVEHLKAEIEKFYGKDAARK-ASPDLARIVND 286
Query: 357 AQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAV 416
+++ ++ DA++KGAKV GG ++ APT+LTN+TPDM EE+FGPV
Sbjct: 287 RHFDRLKGLLDDAVAKGAKVEFGG--QFDAAQRYIAPTVLTNVTPDMKIMQEEIFGPVLP 344
Query: 417 CIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGII--SHTEAA 474
I ++ +E + N LA Y F+ D + +V + G V +N+ ++ +
Sbjct: 345 IITYEDLDEVIEYINAKPKPLALYVFSKDKANVNKVLARTSSGGVVVNDVVLHFLNPNLP 404
Query: 475 FGGVKESGLGREGSRHGMEEFT 496
FGGV SG+G +G + F+
Sbjct: 405 FGGVNNSGIGSYHGVYGFKAFS 426
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 221 bits (566), Expect = 5e-67
Identities = 131/433 (30%), Positives = 212/433 (48%), Gaps = 24/433 (5%)
Query: 66 DVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGE 125
V A+ +A+ AF W+ + +ER +L+R+ + L+ NK+ LA ++++E+GKP E+ E
Sbjct: 1 QVDAAVAAARAAFPGWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQTE 60
Query: 126 VVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVA 185
V +D S +A +P+ ++ P GV+ + P+NFP + +
Sbjct: 61 VAAMAGKID-ISIKAYHERTGERATPMAQGRAVLRHRPHGVMAVFGPFNFPGHLPNGHIV 119
Query: 186 PALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPH 245
PAL AG T V KP+E TP A + L EA +P GVLN+V R G+ L
Sbjct: 120 PALLAGNTVVFKPSELTPAVAELMVELWEEAGLPPGVLNLVQGGRE----TGEALAAHEG 175
Query: 246 VAGISFTGSTQVGKILYSH-CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRN 304
+ G+ FTGS G +L+ + K L+LE+GGN P +V+ A++ A + + F
Sbjct: 176 IDGLLFTGSAATGLLLHRQFAGRPGKILALEMGGNNPLVVWDVADIDAAAYLIVQSAFLT 235
Query: 305 CGQACVAANR-FLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVD 363
GQ C A R + V D F+E L VE K G +GPLI A +
Sbjct: 236 AGQRCTCARRLIVPDGAVGDAFLERL-VEAAKRLRIGAPDAEPP-FMGPLIIAAAAARYL 293
Query: 364 SIVQDAISKGAKVILGGGKVTKL--GSKFFAPTIL--TNIT--PDMLCYTEEVFGPVAVC 417
QD ++ G + +L + +L G+ F +P I+ T+ PD EE+FGP+
Sbjct: 294 LAQQDLLALGGEPLL---AMERLVAGTAFLSPGIIDVTDAADVPD-----EEIFGPLLQV 345
Query: 418 IKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGII-SHTEAAFG 476
++ +E++ +AN + GL+ ++D + R +++ G+V N + + A FG
Sbjct: 346 YRYDDFDEAIALANATRFGLSAGLLSDDEALFERFLARIRAGIVNWNRPTTGASSTAPFG 405
Query: 477 GVKESGLGREGSR 489
GV SG R +
Sbjct: 406 GVGLSGNHRPSAY 418
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 219 bits (560), Expect = 2e-65
Identities = 151/478 (31%), Positives = 233/478 (48%), Gaps = 25/478 (5%)
Query: 33 YINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
Y +GEW SS K + NP+ + V E+V A+ SAK A + W++T +R
Sbjct: 19 YADGEWRTSSSGKSVAITNPSTRKTQYKVQACTQEEVNKAMESAKAAQKAWAKTPLWKRA 78
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGE---L 147
+L + L+ +K +AE + +E KP +++ EVV + + + +EE R GE L
Sbjct: 79 ELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGVRILGEGKFL 138
Query: 148 V----PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTP 203
V P ++K L + PLGVV I P+N+P+ + K+APAL AG V+KP
Sbjct: 139 VSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNAVVLKPPTQGA 198
Query: 204 LTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYS 263
+ AL + H A PKG+++ VT + +G L P V ISFTG G +
Sbjct: 199 VAALHMVHCFHLAGFPKGLISCVTG---KGSEIGDFLTMHPGVNCISFTG----GDTGIA 251
Query: 264 HCSQ-GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+ G+ L +ELGG IV +A+L A + + F GQ C A L+ E V
Sbjct: 252 ISKKAGMVPLQMELGGKDACIVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVMESVA 311
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D VE + ++ K + D C++ P+++ + ++ +V DA KGA +
Sbjct: 312 DALVEKVNAKVAKLTV---GPPEDDCDITPVVSESSANFIEGLVMDAKEKGATFC----Q 364
Query: 383 VTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFF 442
K P +L N+ PDM EE FGPV I+ + EE + N SN GL G F
Sbjct: 365 EWKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVF 424
Query: 443 TNDISQAWRVGKKLQVGMVGINEGIISHTEA-AFGGVKESGLGREGSRHGMEEFTQIK 499
T DI++A + ++ G V IN + F G+K+SG+G +G + + T++K
Sbjct: 425 TRDINKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKVK 482
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 218 bits (558), Expect = 6e-65
Identities = 147/470 (31%), Positives = 226/470 (48%), Gaps = 39/470 (8%)
Query: 34 INGEWVHSSKKFPVYNPANDE-HLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIV 92
INGE + + PV +PA+ E + +V EDV A+ A AF WS T +ER +
Sbjct: 37 INGEETETGEGAPVIDPADHERTIGEVSLADAEDVDAALAIAAAAFAGWSATPVEERAEI 96
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGE-LVPSP 151
L++ LE N+ L + E+GK ++ EV A F +++ +AR + + +P P
Sbjct: 97 LEKAADLLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQARELFSDPELPGP 156
Query: 152 V-KSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALA 210
+ L + GV I+PWNFP+A+ T ++A ALAAG T + KPAE TPL A
Sbjct: 157 TGELNGLEL--HGRGVFVCISPWNFPLAIFTGQIAAALAAGNTVIAKPAEQTPLIAARAV 214
Query: 211 ALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ--- 267
L HEA +P+ VL +V +G+ L P + G+ FTGST+ K++ ++
Sbjct: 215 ELLHEAGVPRDVLQLVPGDG---EEIGEALVAHPRIDGVIFTGSTETAKLINRALAERDG 271
Query: 268 GIKRLSLELGG-NAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFV 326
I L E GG NA IV S A ++AV + + F + GQ C A +QE++ ++F+
Sbjct: 272 PILPLIAETGGKNA-MIVDSTALPEQAVKDVVQSAFGSAGQRCSALRLLYLQEEIAERFI 330
Query: 327 EMLKVEITKSFIQGDTS--KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT 384
EMLK S GD D +GPLI+ + + + + + +G ++ +
Sbjct: 331 EMLK-GAMASLKVGDPWDLSTD---VGPLIDKPAGKLLRAHTE--LMRGEAWLIAPAPLD 384
Query: 385 KLGSKFFAPTI--LTNITPDMLCYTEEVFGPVAVCIKFKTE--EESLCVANNSNTGLAGY 440
F AP I + I T EVFGP+ I+FK E +E++ N + GL
Sbjct: 385 DGNGYFVAPGIIEIVGIF----DLTTEVFGPILHVIRFKAEDLDEAIEDINATGYGLTLG 440
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA------FGGVKESGLG 484
+ D + ++++ G + IN I A FGG SG G
Sbjct: 441 IHSRDEREIEYWRERVEAGNLYINRNIT----GAIVGRQPFGGWGLSGTG 486
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 216 bits (552), Expect = 7e-65
Identities = 132/419 (31%), Positives = 219/419 (52%), Gaps = 35/419 (8%)
Query: 94 KRWLKEL----EGNKQALAEIMTQESGKPPTESL--------GEVVYANSFVDWFSEEAR 141
LK+L + N++A+ E + ++ G+PP E+L ++++ + ++++ +
Sbjct: 30 LWQLKQLYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSGVKNDILHMLKNLKKWAKDEK 89
Query: 142 RTYGELVPSPVKSKELLMVR-EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
G L K + +R EPLGVV +I PWN+P+ + + A+AAGCT V+KP+E
Sbjct: 90 VKDGPLAFMFGKPR----IRKEPLGVVLIIGPWNYPVLLALSPLVGAIAAGCTVVLKPSE 145
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLL-CTSPHVAGISFTGSTQVGK 259
TP TA LA L + + VV LL I +TGS +VG+
Sbjct: 146 LTPHTAALLAELVPKY-LDPDAFQVVQGG---VPETTALLEQKFDK---IFYTGSGRVGR 198
Query: 260 ILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQE 319
I+ ++ + ++LELGG +P IV NA+L+ A + KF N GQ CVA + L+
Sbjct: 199 IIAEAAAKHLTPVTLELGGKSPVIVTKNADLELAAKRILWGKFGNAGQICVAPDYVLVDP 258
Query: 320 QVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILG 379
V+D+FVE LK + + + G + D ++N ++ S++ +KG KV++G
Sbjct: 259 SVYDEFVEELKKVLDEFYPGGANASPD---YTRIVNPRHFNRLKSLLDT--TKG-KVVIG 312
Query: 380 GGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAG 439
G ++F PTI+++++ D +EE+FGPV IK +E++ V N+ +T LA
Sbjct: 313 G--EMDEATRFIPPTIVSDVSWDDSLMSEELFGPVLPIIKVDDLDEAIKVINSRDTPLAL 370
Query: 440 YFFTNDISQAWRVGKKLQVGMVGINEGII--SHTEAAFGGVKESGLGREGSRHGMEEFT 496
Y FT+D S+ + + + G V IN+ +I A FGGV +SG G ++G + FT
Sbjct: 371 YIFTDDKSEIDHILTRTRSGGVVINDTLIHVGVDNAPFGGVGDSGYGAYHGKYGFDTFT 429
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 217 bits (555), Expect = 8e-65
Identities = 137/482 (28%), Positives = 226/482 (46%), Gaps = 24/482 (4%)
Query: 33 YINGEWVHSSKKFPVYNPANDEH-LADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
I GEWV + ++ +P + + + A+ +A AF+ W ++R
Sbjct: 22 VIGGEWVDTKERMVSVSPFAPSEVVGTTAKADKAEAEAALEAAWAAFKTWKDWPQEDRAR 81
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYG---ELV 148
+L + L ++ L +T E GK E++ +V A F+ +++ A R E+V
Sbjct: 82 LLLKAADLLRRRRRELIATLTYEVGKNWVEAIDDVAEAIDFIRYYARAALRLRYPAVEVV 141
Query: 149 PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
P P + E V LG +I+PWNFP+A+ T + +A G T + KPAED +
Sbjct: 142 PYPGEDNESFYV--GLGAGVVISPWNFPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVGYK 199
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ- 267
+ + HEA P GV+ + VG L + GI+FTGS + GK +Y ++
Sbjct: 200 VFEIFHEAGFPPGVVQFLPGV---GEEVGAYLTEHERIRGINFTGSLETGKKIYEAAARL 256
Query: 268 -----GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
KRL +E GG IV A+ + V G + + F GQ C AA+R ++ + +
Sbjct: 257 APGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQKCSAASRLILTQGAY 316
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
+ +E L + + G +N +LGP+I+ Q KV S ++ ++G ++ GGK
Sbjct: 317 EPVLERLLKRAERLSV-GPPEEN-GTDLGPVIDAEQEAKVLSYIEHGKNEGQ--LVLGGK 372
Query: 383 VTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEE--ESLCVANNSNTGLAGY 440
+ F APT++ + P EE+FGPV I++K ++ E+L VAN++ GL G
Sbjct: 373 RLEGEGYFVAPTVVEEVPPKARIAQEEIFGPVLSVIRYKDDDFAEALEVANSTPYGLTGG 432
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHT--EAAFGGVKESGLG-REGSRHGMEEFTQ 497
++ ++ VG + IN I FGG K SG + G H + F +
Sbjct: 433 VYSRKREHLEEARREFHVGNLYINRKITGALVGVQPFGGFKLSGTNAKTGGPHYLRRFLE 492
Query: 498 IK 499
+K
Sbjct: 493 MK 494
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 210 bits (535), Expect = 5e-61
Identities = 148/478 (30%), Positives = 236/478 (49%), Gaps = 23/478 (4%)
Query: 34 INGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
I G +V SS V NPA E ++ VP E+ + A+ +AK+AF W T R
Sbjct: 118 IGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQR 177
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSP 151
V+ ++ + + N LA +T E GK +S G++ V+ A GE +P+
Sbjct: 178 VMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNV 237
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAP-ALAAGCTCVIKPAEDTPLTALALA 210
+ +REPLGV I P+NFP AMI + P A+ G T ++KP+E P ++ LA
Sbjct: 238 SNGVDTYSIREPLGVCAGICPFNFP-AMIPLWMFPVAVTCGNTFILKPSEKDPGASVILA 296
Query: 211 ALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIK 270
LA EA +P GVLN+V + N++ C + +SF GS G +Y+ + K
Sbjct: 297 ELAMEAGLPDGVLNIVHGTNDTVNAI----CDDEDIRAVSFVGSNTAGMHIYARAAAKGK 352
Query: 271 RLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLI---QEQVFDQFVE 327
R+ +G +V +AN+ ++ +AA F GQ C+A + + + D+ VE
Sbjct: 353 RIQSNMGAKNHGLVLPDANIDATLNALLAAGFGAAGQRCMALSTVVFVGDAKSWEDKLVE 412
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
K ++ +LGP+I+ E++ ++Q + GAK++L G + G
Sbjct: 413 RAKA------LKVTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPG 466
Query: 388 ---SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTN 444
F PTIL+ +TPDM CY EE+FGPV VC++ + +E++ + N + G FT+
Sbjct: 467 YEKGNFIGPTILSGVTPDMECYKEEIFGPVLVCMQANSFDEAISIINKNKYGNGAAIFTS 526
Query: 445 DISQAWRVGKKLQVGMVGINEGI-ISHTEAAFGGVKESGLGREG--SRHGMEEFTQIK 499
+ A + ++ G +GIN I + +F G K S G + G++ FTQIK
Sbjct: 527 SGAAARKFQMDIEAGQIGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVDFFTQIK 584
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 203 bits (517), Expect = 2e-59
Identities = 138/462 (29%), Positives = 225/462 (48%), Gaps = 26/462 (5%)
Query: 32 AYINGEWV----HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
+I+G+W S NPA E L V+ A+ +A+ AF W++ + +
Sbjct: 1 LFIDGKWRAGQGESFSST---NPATQEVLWQGAAASAAQVEAAVAAARAAFPAWARLSLE 57
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
ER V++R+ LE K+ALA ++ +E+GKP E+ EV V S +A
Sbjct: 58 ERIAVVQRFAALLEERKEALARVIARETGKPLWETRTEVASMIGKVA-ISIKAYHERTGE 116
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+P+ ++ P GVV + P+NFP + + PAL AG T V KP+E TP A
Sbjct: 117 SENPMPDGRAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAE 176
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS- 266
L +A +P GVLN+V +R G L P + G+ FTGS+ G +L+ +
Sbjct: 177 ETVKLWEKAGLPAGVLNLVQGAR----ETGVALAAHPDIDGLLFTGSSNTGHLLHRQFAG 232
Query: 267 QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF-DQF 325
+ K L+LE+GGN P IV A++ AV + + F + GQ C A R L+ + D F
Sbjct: 233 RPEKILALEMGGNNPLIVDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPDGAQGDAF 292
Query: 326 VEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTK 385
+ L VE+ + G + +G +I+L +++ + ++ G K +L +
Sbjct: 293 LARL-VEVAERLTVGAWDAEPQPFMGAVISLQAAQRLLAAQAKLLALGGKSLL-AMRQLD 350
Query: 386 LGSKFFAPTIL--TNI--TPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYF 441
G+ P I+ T + PD EE FGP+ I++ +E++ +ANN+ GL+
Sbjct: 351 PGAALLTPGIIDVTGVAELPD-----EEHFGPLLQVIRYDDFDEAIAIANNTRFGLSAGL 405
Query: 442 FTNDISQAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKESG 482
++D R +++ G+V N+ + + AA FGG+ SG
Sbjct: 406 LSDDRELYDRFLLEIRAGIVNWNKPLTGASSAAPFGGIGASG 447
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 200 bits (511), Expect = 3e-58
Identities = 123/423 (29%), Positives = 203/423 (47%), Gaps = 28/423 (6%)
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES--------LGEVVYANSFVDWFSE 138
+ R L+ L+ LE NKQ +E + ++ G+ P E+ + E+ + +D + +
Sbjct: 29 EFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVLLTVAEIEHLLKHLDEYLK 88
Query: 139 EARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKP 198
+ V P KS ++ EPLGVV +I WN+P+ + +A A+AAG T V+KP
Sbjct: 89 P-EKVDTVGVFGPGKSY---IIPEPLGVVLVIGAWNYPLNLTLIPLAGAIAAGNTVVLKP 144
Query: 199 AEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVG 258
+E +P T+ +A L + + + V+ I FTGS +VG
Sbjct: 145 SELSPHTSKLMAKLLTK-YLDPSYVRVIEGGVEVTTE-----LLKEPFDHIFFTGSPRVG 198
Query: 259 KILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQ 318
K++ ++ + +LELGG +P IV + NL+ A KF N GQ CVA + L+
Sbjct: 199 KLVMQAAAENLTPCTLELGGKSPVIVDKSCNLKVAARRIAWGKFLNAGQTCVAPDYVLVH 258
Query: 319 EQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
+ D+F+E LK I + F G+ K + ++N +++ +++D G KV+
Sbjct: 259 RSIKDKFIEALKEAIKEFF--GEDPKKSED-YSRIVNEFHTKRLAELIKD---HGGKVVY 312
Query: 379 GGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLA 438
GG+V +K+ APTI+ N D EE+FGP+ + ++ +E L N+ LA
Sbjct: 313 -GGEVDI-ENKYVAPTIIVNPDLDSPLMQEEIFGPILPILTYENIDEVLEFINSRPKPLA 370
Query: 439 GYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA--FGGVKESGLGREGSRHGMEEFT 496
Y+F D V + G V IN+ + FGGV SG+G ++G + F+
Sbjct: 371 LYYFGEDKRHKELVLENTSSGAVVINDCVFHLLNPNLPFGGVGNSGMGAYHGKYGFDTFS 430
Query: 497 QIK 499
K
Sbjct: 431 HPK 433
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 200 bits (509), Expect = 5e-58
Identities = 142/475 (29%), Positives = 228/475 (48%), Gaps = 14/475 (2%)
Query: 19 KYLQKLCLSTYTQ-AYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEA 77
++L ++ LS+ Y+ GEW + NPAN++ +A+V + +ED + + + +EA
Sbjct: 9 EFLSEIGLSSRNLGCYVGGEWRANGPLVSSVNPANNQPIAEVVEASLEDYEEGLRACEEA 68
Query: 78 FEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFS 137
+ W Q +RG ++++ L L +++ E GK E +GEV D+
Sbjct: 69 AKIWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIGEVQEIIDMCDFAV 128
Query: 138 EEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIK 197
+R+ G ++PS + ++ V PLG+VG+IT +NFP A++ AL G V K
Sbjct: 129 GLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWK 188
Query: 198 PAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQV 257
A TPL +A+ L E + + +S +G+ + + +SFTGS++V
Sbjct: 189 GAPTTPLITIAMTKLVAEVLEKNNLPGAIFTSFCGGAEIGEAIAKDTRIPLVSFTGSSKV 248
Query: 258 GKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLI 317
G ++ + + LEL GN IV +A++Q AV + A GQ C R L+
Sbjct: 249 GLMVQQTVNARFGKCLLELSGNNAIIVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLL 308
Query: 318 QEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVI 377
E ++D +E L + + K GD + LGPL + + ++ S+G K I
Sbjct: 309 HESIYDDVLEQL-LTVYKQVKIGDPLEKGTL-LGPLHTPESKKNFEKGIEIIKSQGGK-I 365
Query: 378 LGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGL 437
L GG + F PTI+ I+PD EE+FGPV +KFKT EE++ + N+ GL
Sbjct: 366 LTGGSAIESEGNFVQPTIV-EISPDADVVKEELFGPVLYVMKFKTLEEAIEINNSVPQGL 424
Query: 438 AGYFFTN--DISQAWRVGKKLQVGMVGINEGIISHTEA----AFGGVKESGLGRE 486
+ FT + W G+V +N I A AFGG K +G GRE
Sbjct: 425 SSSIFTRNPETIFKWIGPLGSDCGIVNVN---IPTNGAEIGGAFGGEKATGGGRE 476
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 198 bits (505), Expect = 6e-58
Identities = 127/430 (29%), Positives = 209/430 (48%), Gaps = 32/430 (7%)
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQE-SGKPPTES-LGEVV-------YANSFVD- 134
+ +ER L R L N+ ALAE ++ + + E+ L E++ +A +
Sbjct: 18 SLEERRDRLDRLKALLLDNQDALAEAISADFGHRSRHETLLAEILPSIAGIKHARKHLKK 77
Query: 135 WFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTC 194
W R L+ P K++ + +PLGVVG+I PWN+P+ + + ALAAG
Sbjct: 78 WMKPSRRHV--GLLFLPAKAE---VEYQPLGVVGIIVPWNYPLYLALGPLIAALAAGNRV 132
Query: 195 VIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSP--HVAGISFT 252
+IKP+E TP T+ LA L E + + VVT V + P H + FT
Sbjct: 133 MIKPSEFTPRTSALLAELLAEY-FDEDEVAVVTGGAD----VAAAFSSLPFDH---LLFT 184
Query: 253 GSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAA 312
GST VG+ + ++ + ++LELGG +P I+ +A+L KA K N GQ CVA
Sbjct: 185 GSTAVGRHVMRAAAENLTPVTLELGGKSPAIIAPDADLAKAAERIAFGKLLNAGQTCVAP 244
Query: 313 NRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISK 372
+ L+ E ++FV K + K + + + +IN ++ +++DA +K
Sbjct: 245 DYVLVPEDKLEEFVAAAKAAVAKMYPTLADNP----DYTSIINERHYARLQGLLEDARAK 300
Query: 373 GAKVI-LGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVAN 431
GA+VI L ++ PT++ N+T DM EE+FGP+ + + + +E++ N
Sbjct: 301 GARVIELNPAGEDFAATRKLPPTLVLNVTDDMRVMQEEIFGPILPILTYDSLDEAIDYIN 360
Query: 432 NSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGI--ISHTEAAFGGVKESGLGREGSR 489
LA Y+F D ++ RV ++ G V IN+ + ++ + FGGV SG+G +
Sbjct: 361 ARPRPLALYYFGEDKAEQDRVLRRTHSGGVTINDTLLHVAQDDLPFGGVGASGMGAYHGK 420
Query: 490 HGMEEFTQIK 499
G F+ K
Sbjct: 421 EGFLTFSHAK 430
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 197 bits (502), Expect = 4e-57
Identities = 144/467 (30%), Positives = 233/467 (49%), Gaps = 38/467 (8%)
Query: 33 YINGEWVH-SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
+ING+W+ + F NP + E L D V A+ +A+ AF W++ + +ER
Sbjct: 4 WINGDWIAGQGEAFESRNPVSGEVLWQGNDATAAQVDAAVRAARAAFPAWARLSFEERQA 63
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA--RRTYGELVP 149
+++R+ LE NK+ LAE++ +E+GKP E+ EV + + S +A RT GE
Sbjct: 64 IVERFAALLEENKEELAEVIARETGKPLWEAATEVTAMINKIA-ISIQAYHERT-GE--- 118
Query: 150 SPVKSKELL----MVR-EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
K E+ ++R P GVV + P+NFP + + PAL AG T V KP+E TP
Sbjct: 119 ---KRSEMADGAAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPW 175
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
A L +A +P GVLN+V R GK L P + G+ FTGS G +L+
Sbjct: 176 VAELTVKLWQQAGLPAGVLNLVQGGRET----GKALAAHPDIDGLLFTGSANTGYLLHRQ 231
Query: 265 -CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF- 322
Q K L+LE+GGN P ++ A++ AV + + F + GQ C A R L+ +
Sbjct: 232 FAGQPEKILALEMGGNNPLVIDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPQGAQG 291
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D F+ L V + K G + +G +I+ + + + ++ G K +L +
Sbjct: 292 DAFLARL-VAVAKRLTVGRWDAEPQPFMGAVISEQAAQGLVAAQAQLLALGGKSLL---E 347
Query: 383 VTKL--GSKFFAPTIL--TNIT--PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTG 436
+T+L G+ P I+ T + PD EE FGP+ +++ +E++ +ANN+ G
Sbjct: 348 MTQLQAGTGLLTPGIIDVTGVAELPD-----EEYFGPLLQVVRYDDFDEAIRLANNTRFG 402
Query: 437 LAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKESG 482
L+ ++D + +++ G+V N+ + + AA FGGV SG
Sbjct: 403 LSAGLLSDDREDYDQFLLEIRAGIVNWNKPLTGASSAAPFGGVGASG 449
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 195 bits (498), Expect = 7e-57
Identities = 128/419 (30%), Positives = 204/419 (48%), Gaps = 45/419 (10%)
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTES--------LGEVVYANSFVD-WFSEEARRT 143
LK+ + ++ + + E + ++ GK E+ L E+ YA + W + +T
Sbjct: 26 LKKLKQAIKKYENEILEALKKDLGKSEFEAYMTEIGFVLSEINYAIKHLKKWMKPKRVKT 85
Query: 144 YGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAP---ALAAGCTCVIKPAE 200
PS KS + EP GVV +I PWN+P + +AP A+AAG T V+KP+E
Sbjct: 86 PLLNFPS--KSY---IYYEPYGVVLIIAPWNYPFQLA---LAPLIGAIAAGNTAVLKPSE 137
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI 260
TP T+ +A + E + + VV +LL I FTGS +VGKI
Sbjct: 138 LTPNTSKVIAKIIEET-FDEEYVAVVEGGVEENQ---ELL--DQKFDYIFFTGSVRVGKI 191
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ ++ + ++LELGG +P IV +ANL+ A + KF N GQ CVA + L+ E
Sbjct: 192 VMEAAAKHLTPVTLELGGKSPCIVDEDANLKLAAKRIVWGKFLNAGQTCVAPDYVLVHES 251
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
V ++F++ LK EI K + G+ + G +IN +++ ++ + K++ GG
Sbjct: 252 VKEKFIKELKEEIKKFY--GEDPLESP-DYGRIINEKHFDRLAGLLDN-----GKIVFGG 303
Query: 381 GKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
T + + PTIL N+T D EE+FGP+ + + T +E++ + + LA Y
Sbjct: 304 N--TDRETLYIEPTILDNVTWDDPVMQEEIFGPILPVLTYDTLDEAIEIIKSRPKPLALY 361
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGII----SHTEAAFGGVKESGLGREGSRHGMEEF 495
F+ D +V + L G IN+ I+ + FGGV SG+ GS HG F
Sbjct: 362 LFSEDKKVEKKVLENLSFGGGCINDTIMHLANPYL--PFGGVGNSGM---GSYHGKYSF 415
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 188 bits (480), Expect = 6e-54
Identities = 134/479 (27%), Positives = 214/479 (44%), Gaps = 32/479 (6%)
Query: 34 INGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIV 92
I + + PV NPA+ + + V + VQ AI SA++AF W+ T KER
Sbjct: 42 IGHSYKADGEAQPVTNPADRRDIVGQVFHANLAHVQAAIDSAQQAFPTWNATPAKERAAK 101
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPV 152
L R LE + L + +E+GK ++ EV A F +++++ R GE
Sbjct: 102 LDRLADLLELHMPELMALCVREAGKTIHNAIAEVREAVDFCRYYAKQVRDVLGE------ 155
Query: 153 KSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAAL 212
E GV I+PWNFP+A+ T +++ ALAAG T + KPAE T L A L
Sbjct: 156 ------FSVESRGVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVEL 209
Query: 213 AHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIK-- 270
EA P G + ++ VG L + P +AG++FTGST+V +++ +Q
Sbjct: 210 MQEAGFPAGTIQLLPGR---GADVGAALTSDPRIAGVAFTGSTEVAQLINQTLAQREDAP 266
Query: 271 -RLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
L E GG IV S A ++ V + + F + GQ C A +QE V D+ + M+
Sbjct: 267 VPLIAETGGQNAMIVDSTALPEQVVRDVLRSAFDSAGQRCSALRVLCVQEDVADRVLTMI 326
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKV--ILGGGKVTKLG 387
+ + + ++ ++GP+I+ + + + ++ K+ +
Sbjct: 327 QGAMQE--LKVGVPHLLTTDVGPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQH 384
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLA---GYFFTN 444
F APT+ L +EEVFGPV +++K E V + TG G
Sbjct: 385 GTFVAPTLFELDDIAEL--SEEVFGPVLHVVRYKARELDQIVDQINQTGYGLTMGVHSRI 442
Query: 445 DISQAWRVGKKLQVGMVGINEGIISHTEAA--FGGVKESGLG-REGSRHGMEEFTQIKY 500
+ + W + K +VG +N + FGG SG G + G H + TQ++Y
Sbjct: 443 ETTYRW-IEKHARVGNCYVNRNQVGAVVGVQPFGGQGLSGTGPKAGGPHYLYRLTQVQY 500
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 193 bits (493), Expect = 3e-53
Identities = 148/464 (31%), Positives = 229/464 (49%), Gaps = 61/464 (13%)
Query: 46 PVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNK 104
PV NPA+ D+ + V + EDV+ A+ +A+ AF +WS T ER +L+R +E +
Sbjct: 570 PVLNPADHDDVVGTVTEASAEDVERALAAAQAAFPEWSATPAAERAAILERAADLMEAHM 629
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPL 164
L + +E+GK ++ EV A F+ +++ +ARR L +PL
Sbjct: 630 PELFALAVREAGKTLANAIAEVREAVDFLRYYAAQARRL---LNGPG---------HKPL 677
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLN 224
G V I+PWNFP+A+ T ++A AL AG T + KPAE TPL A L HEA +PK L
Sbjct: 678 GPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRLLHEAGVPKDALQ 737
Query: 225 VVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI----LYSHCSQGIKRLSLELGG-N 279
++ +VG L P +AG+ FTGST+V ++ L + L E GG N
Sbjct: 738 LLPGD---GRTVGAALVADPRIAGVMFTGSTEVARLIQRTLAKRSGPPVP-LIAETGGQN 793
Query: 280 APFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFL-IQEQVFDQFVEMLK---VEITK 335
A IV S+A ++ V+ +A+ F + GQ C +A R L +QE V D+ + MLK E+
Sbjct: 794 A-MIVDSSALPEQVVADVIASAFDSAGQRC-SALRVLCLQEDVADRVLTMLKGAMDELR- 850
Query: 336 SFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVI-LGGGKVTKLGSKFFAPT 394
GD + ++GP+I+ +++ ++ + G V L T+ G+ F APT
Sbjct: 851 ---IGDPWRLS-TDVGPVIDAEAQANIEAHIEAMRAAGRLVHQLPLPAETEKGT-FVAPT 905
Query: 395 I--LTNITPDMLCYTEEVFGPVAVCIKFKTEE-ESLCVANNSNTGLAGYFFTNDI----- 446
+ + +I D+ EVFGPV ++FK +E + + N+ GY T +
Sbjct: 906 LIEIDSI-SDL---EREVFGPVLHVVRFKADELDRVIDDINA----TGYGLTFGLHSRID 957
Query: 447 SQAWRVGKKLQVGMVGINEGIISHTEAA------FGGVKESGLG 484
V +++ G + +N II A FGG SG G
Sbjct: 958 ETIAHVTSRIRAGNIYVNRNII----GAVVGVQPFGGEGLSGTG 997
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 186 bits (475), Expect = 1e-51
Identities = 143/470 (30%), Positives = 224/470 (47%), Gaps = 49/470 (10%)
Query: 34 INGEWVHSSKKFPVYNPANDEHL-ADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIV 92
+NG V + PV NPA+ + + V + DV+ A+ +A A WS T P ER +
Sbjct: 118 VNGAPVAGGEPRPVINPADPDDIVGTVTEATEADVEQALEAAVAAAPIWSATPPAERAAI 177
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPV 152
L+R +E L ++ +E+GK + ++ EV A F+ +++ +AR T+G L
Sbjct: 178 LERAADLMEAQMPQLMGLLVREAGKTLSNAIAEVREAVDFLRYYAGQARDTFGNLT---- 233
Query: 153 KSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAAL 212
PLG V I+PWNFP+A+ T ++A ALAAG + + KPAE TPL A L
Sbjct: 234 --------HRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVRL 285
Query: 213 AHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS--QG-I 269
HEA +P GVL ++ +VG L VAG+ FTGST+V +++ + QG
Sbjct: 286 LHEAGVPPGVLQLLPG---RGETVGAALTADARVAGVMFTGSTEVARLIQRQLAKRQGRP 342
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
L E GG IV S+A ++ V+ +A+ F + GQ C A +QE V D+ + ML
Sbjct: 343 IPLIAETGGQNAMIVDSSALAEQVVADVLASAFDSAGQRCSALRVLCLQEDVADRILTML 402
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG-- 387
K + + + G+ + ++GP+I+ E +I + + +K G V +
Sbjct: 403 KGAMAELRV-GNPDRL-TTDVGPVID---AEAKANIEKHIQTMRSK----GRLVHQAAAP 453
Query: 388 -----SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEE-ESLCVANNSNTGLAGYF 441
F APT++ D L EVFGPV +++K +E + + N+ GY
Sbjct: 454 NSLQKGTFVAPTLIELENLDEL--QREVFGPVLHVVRYKRDELDEVIDQINAT----GYG 507
Query: 442 FTNDI-----SQAWRVGKKLQVGMVGINEGIISHTEA--AFGGVKESGLG 484
T + V ++ G + +N I+ FGG SG G
Sbjct: 508 LTLGVHTRIDETIAHVTERAHAGNLYVNRNIVGAVVGVQPFGGEGLSGTG 557
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 181 bits (463), Expect = 3e-49
Identities = 149/457 (32%), Positives = 226/457 (49%), Gaps = 68/457 (14%)
Query: 46 PVYNPANDEH-LADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNK 104
PV +PA+ + +V E V+ A+ +A+ AF WS+T +ER +L+R LE N+
Sbjct: 565 PVVSPADRRRVVGEVAFADAEQVEQALAAARAAFPAWSRTPVEERAAILERAADLLEANR 624
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYG--ELVPSPV-KSKELLMVR 161
L + +E+GK +++ EV A F +++ +ARR +G E +P P +S EL
Sbjct: 625 AELIALCVREAGKTLQDAIAEVREAVDFCRYYAAQARRLFGAPEKLPGPTGESNEL--RL 682
Query: 162 EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKG 221
GV I+PWNFP+A+ +VA ALAAG T + KPAE TPL A L HEA IPK
Sbjct: 683 HGRGVFVCISPWNFPLAIFLGQVAAALAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPKD 742
Query: 222 VLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKR---------- 271
VL ++ +VG L P +AG++FTGST+ +I I R
Sbjct: 743 VLQLLPGD---GATVGAALTADPRIAGVAFTGSTETARI--------INRTLAARDGPIV 791
Query: 272 -LSLELGG-NAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
L E GG NA IV S A ++ V + + FR+ GQ C A +QE + D+ +EML
Sbjct: 792 PLIAETGGQNA-MIVDSTALPEQVVDDVVTSAFRSAGQRCSALRVLFVQEDIADRVIEML 850
Query: 330 K---VEITKSFIQGDTS--KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVI----LGG 380
K E+ GD D +GP+I+ +D+ + + + + A+++ L
Sbjct: 851 KGAMAELK----VGDPRLLSTD---VGPVIDAEAKANLDAHI-ERMKREARLLAQLPLPA 902
Query: 381 GKVTKLGSKFFAPTI--LTNITPDMLCYTEEVFGPVAVCIKFKTEE-ESLCVANNSNTGL 437
G T+ G F APT + +I L EVFGP+ I++K + + + A N+
Sbjct: 903 G--TENGH-FVAPTAFEIDSI--SQL--EREVFGPILHVIRYKASDLDKVIDAINA---- 951
Query: 438 AGYFFT------NDISQAWRVGKKLQVGMVGINEGII 468
GY T + A R+ +++VG V +N I
Sbjct: 952 TGYGLTLGIHSRIE-ETADRIADRVRVGNVYVNRNQI 987
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 171 bits (436), Expect = 6e-48
Identities = 133/449 (29%), Positives = 216/449 (48%), Gaps = 48/449 (10%)
Query: 70 AIMSAKEAFEQWSQTTPKE-RGIVLKRWLKELEGNKQALAEIMTQESGKPPTES-LGEVV 127
A+ A+EAF +T P E R L+ L+ LE N+ + E + ++ KP E+ L E++
Sbjct: 3 AVRRAREAFSS-GKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEIL 61
Query: 128 YANSFVDWFSEEARRTYGEL----VPSPVK------SKELLMVREPLGVVGLITPWNFPM 177
E + L P PVK ++ + +EPLGVV +I WN+P+
Sbjct: 62 LVK-------NEIKYAISNLPEWMKPEPVKKNLATLLDDVYIYKEPLGVVLIIGAWNYPL 114
Query: 178 AMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLN----VVTSSRTNA 233
+ + A+AAG VIKP+E +P TA LA L IPK + VV
Sbjct: 115 QLTLVPLVGAIAAGNCVVIKPSEVSPATAKLLAEL-----IPKYLDKECYPVVLGG---V 166
Query: 234 NSVGKLL-CTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQK 292
+LL + I +TGST VGKI+ ++ + ++LELGG +P V + ++
Sbjct: 167 EETTELLKQRFDY---IFYTGSTSVGKIVMQAAAKHLTPVTLELGGKSPCYVDKSCDIDV 223
Query: 293 AVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGP 352
A KF N GQ C+A + L +V ++FVE LK + K F D ++ + G
Sbjct: 224 AARRIAWGKFINAGQTCIAPDYVLCTPEVQEKFVEALK-KTLKEFYGEDPKESP--DYGR 280
Query: 353 LINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFG 412
+IN ++ ++ +S G KV +GG T ++ APT+LT++ P EE+FG
Sbjct: 281 IINDRHFQR----LKKLLSGG-KVAIGGQ--TDEKERYIAPTVLTDVKPSDPVMQEEIFG 333
Query: 413 PVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTE 472
P+ + +E++ N+ LA Y F+N+ ++ G V +N+ I+ +T
Sbjct: 334 PILPIVTVNNLDEAIEFINSREKPLALYVFSNNKKVINKILSNTSSGGVCVNDTIMHYTL 393
Query: 473 AA--FGGVKESGLGREGSRHGMEEFTQIK 499
+ FGGV SG+G ++ + F+ +
Sbjct: 394 DSLPFGGVGNSGMGAYHGKYSFDTFSHKR 422
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 169 bits (430), Expect = 2e-47
Identities = 131/448 (29%), Positives = 209/448 (46%), Gaps = 36/448 (8%)
Query: 64 VEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES- 122
V +++ S + +W ++ LK L+ ++ N+ + + Q+ GKP ES
Sbjct: 5 VRELRETFRSGRTRSAEWRKSQ-------LKGLLRLVDENEDDIFAALRQDLGKPSAESF 57
Query: 123 LGEV--------VYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWN 174
EV + W + E +T L P K++ +V EPLGVV +I+ WN
Sbjct: 58 RDEVSVLVSSCKLAIKELKKWMAPEKVKT--PLTTFPAKAE---IVSEPLGVVLVISAWN 112
Query: 175 FPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNAN 234
FP + V A+AAG V+KP+E P T+ LA L E K + V+
Sbjct: 113 FPFLLSLEPVIGAIAAGNAVVLKPSELAPATSALLAKLIPEYLDTKAI-KVIEGGVPETT 171
Query: 235 SVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAV 294
+ LL I FTGS +VG+I+ + ++ + ++LELGG P IV S +L+ AV
Sbjct: 172 A---LL--EQKWDKIFFTGSPRVGRIIMAAAAKHLTPVTLELGGKCPVIVDSTVDLKVAV 226
Query: 295 SGAMAAKFRNC-GQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPL 353
K+ GQAC+A + L++E ++ LK + K F G+ K K L +
Sbjct: 227 RRIAGGKWGCNNGQACIAPDYVLVEESFAPTLIDALKNTLEKFF--GENPKESKD-LSRI 283
Query: 354 INLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGP 413
+N +++ ++ D S K++ GG + K + + PTIL + D TEE+FGP
Sbjct: 284 VNSHHFQRLSRLLDDP-SVADKIVHGGERDEK--NLYIEPTILLDPPLDSSIMTEEIFGP 340
Query: 414 VAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHT-- 471
+ I K EES+ + N+ LA Y FT + R+ + G V N+ ++ +
Sbjct: 341 LLPIITVKKIEESIEIINSRPKPLAAYVFTKNKELKRRIVAETSSGGVTFNDTVVQYAID 400
Query: 472 EAAFGGVKESGLGREGSRHGMEEFTQIK 499
FGGV ESG G + + F+ K
Sbjct: 401 TLPFGGVGESGFGAYHGKFSFDAFSHKK 428
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 171 bits (435), Expect = 1e-45
Identities = 116/407 (28%), Positives = 187/407 (45%), Gaps = 66/407 (16%)
Query: 46 PVYNPANDEHLAD----VPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELE 101
PV NPA+ D V + +V+ A+ SA A W T P ER +L+R +E
Sbjct: 662 PVINPAD---PRDIVGYVREATPAEVEQALESAVNAAPIWFATPPAERAAILERAADLME 718
Query: 102 GNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVR 161
Q L ++ +E+GK + ++ EV A F+ +++ + R + +
Sbjct: 719 AQMQTLMGLLVREAGKTFSNAIAEVREAVDFLRYYAGQVRDDF---------DND---TH 766
Query: 162 EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKG 221
PLG V I+PWNFP+A+ T +VA ALAAG + + KPAE TPL A + EA +P G
Sbjct: 767 RPLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAG 826
Query: 222 VLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLS-------- 273
V+ ++ +VG L V G+ FTGST+V ++L + + RL
Sbjct: 827 VVQLLPGR---GETVGAALVADARVRGVMFTGSTEVARLLQRNLA---GRLDPQGRPIPL 880
Query: 274 -LELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVE 332
E GG IV S+A ++ V+ +A+ F + GQ C A +Q+ V D+ ++ML+
Sbjct: 881 IAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQRCSALRVLCLQDDVADRTLKMLRGA 940
Query: 333 ITKSFIQGDTSKNDKCNL----------GPLINLAQVEKVDSIVQDAISKGAKV---ILG 379
+ +C + GP+I+ ++ +Q +KG V
Sbjct: 941 M------------AECRMGNPDRLSTDIGPVIDAEAKANIERHIQAMRAKGRPVFQAARE 988
Query: 380 GGKVTKLGSKFFAPTI--LTNITPDMLCYTEEVFGPVAVCIKFKTEE 424
+ + G+ F PT+ L + D L EVFGPV +++ +
Sbjct: 989 NSEDWQSGT-FVPPTLIELDSF--DEL--KREVFGPVLHVVRYNRNQ 1030
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 159 bits (403), Expect = 4e-43
Identities = 134/449 (29%), Positives = 222/449 (49%), Gaps = 50/449 (11%)
Query: 75 KEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES----LG----EV 126
+E +E + + R LK L+ L+ N++A+ + + Q+ GK E+ +G
Sbjct: 16 RETYESGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKHRVEAYRDEVGVLTKSA 75
Query: 127 VYANSFVD-WFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVA 185
A S + W + + + LV P ++ +V EPLGVV + + WNFP+ + +
Sbjct: 76 NLALSNLKKWMAPK--KAKLPLVAFPATAE---VVPEPLGVVLIFSSWNFPIGLSLEPLI 130
Query: 186 PALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPH 245
A+AAG V+KP+E P T+ LA A IPK + ++ +V K++ P
Sbjct: 131 GAIAAGNAVVLKPSELAPATSAFLA-----ANIPKYL---------DSKAV-KVIEGGPA 175
Query: 246 VA---------GISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIV---YSNANLQKA 293
V I FTGS +VG+I+ + ++ + ++LELGG P IV S+ + + A
Sbjct: 176 VGEQLLQHKWDKIFFTGSPRVGRIIMTAAAKHLTPVALELGGKCPCIVDSLSSSRDTKVA 235
Query: 294 VSGAMAAKFRNC-GQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGP 352
V+ + K+ +C GQAC+A + L++E+ +E+LK I K F G+ + K +
Sbjct: 236 VNRIVGGKWGSCAGQACIAIDYVLVEERFAPILIELLKSTIKKFF--GENPRESKS-MAR 292
Query: 353 LINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFG 412
++N +++ ++++D A ++ GG K F PTIL N D TEE+FG
Sbjct: 293 ILNKKHFQRLSNLLKDP-RVAASIVHGGSIDEK--KLFIEPTILLNPPLDSDIMTEEIFG 349
Query: 413 PVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTE 472
P+ I K E+S+ N+ LA Y FTN+ R+ + G V N+ II +
Sbjct: 350 PLLPIITVKKIEDSIAFINSKPKPLAIYAFTNNEKLKRRILSETSSGSVTFNDAIIQYAC 409
Query: 473 AA--FGGVKESGLGREGSRHGMEEFTQIK 499
+ FGGV ESG GR ++ + F+ K
Sbjct: 410 DSLPFGGVGESGFGRYHGKYSFDTFSHEK 438
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 137 bits (348), Expect = 3e-35
Identities = 124/488 (25%), Positives = 205/488 (42%), Gaps = 31/488 (6%)
Query: 34 INGEWVHSS-KKFPVYNPANDEH-LADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
I GE V +S ++ +P N + LA + E A+ +A +A ++WS +R
Sbjct: 36 IGGEEVWTSGERIYQVSPHNHQAVLAKATNATEELANKAVEAALDAKKEWSLLPFYDRAA 95
Query: 92 VLKRWLKELEG--NKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP 149
+ + L G + LA M +S + V F + ++ AR Y + P
Sbjct: 96 IFLKAADLLSGPYRAEILAATMLGQSKTVYQAEIDAVAELIDFFRFNAKYARELYEQQ-P 154
Query: 150 SPVKSKELLMVREPL-GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
+ PL G V I+P+NF APAL G T + KP++ L+
Sbjct: 155 ISAPGEWNRTEYRPLEGFVYAISPFNFTAIAGNLAGAPALM-GNTVIWKPSDTAMLSNYL 213
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG 268
+ + EA +P GV+N V + V + P +AGI FTGST K L+ +Q
Sbjct: 214 VMRILEEAGLPPGVINFVPG---DGPLVSDTVLADPDLAGIHFTGSTPTFKHLWKQVAQN 270
Query: 269 IK------RLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+ R+ E GG +V+ +A+++ VSG + F GQ C A +R + ++
Sbjct: 271 LDRYHNFPRIVGETGGKDFHVVHPSADVEHVVSGTIRGAFEYQGQKCSACSRLYVPHSLW 330
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKV-ILGGG 381
+F L GD + +G +I+ K+ ++ A S + + IL GG
Sbjct: 331 PRFKGRLL-AELSRVKVGDPD-DFGTFMGAVIDEKSFAKIVKYIEHAKSDPSALTILAGG 388
Query: 382 KVTKLGSKFFAPTILTNITPDMLCYTEEVFGPV-AVCIKFKTEEESLC--VANNSNTGLA 438
K F PT++ + P EE+FGPV V + + + + V + ++ GL
Sbjct: 389 KYDDSVGYFVEPTVVESKDPQEPLMKEEIFGPVLTVYVYPDDKYKEILDLVDSTTSYGLT 448
Query: 439 GYFFTNDISQAWRVGKKLQ--VGMVGINE----GIISHTEAAFGGVKESGLG-REGSRHG 491
G F D K L+ G IN+ ++ + FGG + SG + G H
Sbjct: 449 GAVFAKDRDAILEADKVLRFAAGNFYINDKPTGAVVG--QQPFGGARASGTNDKAGGPHN 506
Query: 492 MEEFTQIK 499
+ +T +
Sbjct: 507 LLRWTSPR 514
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 135 bits (340), Expect = 2e-34
Identities = 100/377 (26%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 134 DWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCT 193
+W + E +T P+ + +V EPLGVV +I+ WN+P + V A++AG
Sbjct: 88 NWMAPEKAKTSLTTFPASAE-----IVSEPLGVVLVISAWNYPFLLSIDPVIGAISAGNA 142
Query: 194 CVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTG 253
V+KP+E P ++ LA L E + + VV + T ++ I +TG
Sbjct: 143 VVLKPSELAPASSALLAKLL-EQYLDSSAVRVVEGAVTETTAL-----LEQKWDKIFYTG 196
Query: 254 STQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFR-NCGQACVAA 312
S+++G+++ + ++ + + LELGG +P +V S+ +L+ V +A K+ N GQAC++
Sbjct: 197 SSKIGRVIMAAAAKHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIAGKWGCNNGQACISP 256
Query: 313 NRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISK 372
+ L ++ + ++ +K E+ + + D + ++N +++ ++ D
Sbjct: 257 DYILTTKEYAPKVIDAMKKELETFYGKNPMESKD---MSRIVNSTHFDRLSKLL-DEKEV 312
Query: 373 GAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANN 432
K++ GG K + + APTIL ++ D L +EE+FGP+ + EES V +
Sbjct: 313 SDKIVYGGEKDRE--NLKIAPTILLDVPLDSLIMSEEIFGPLLPILTLNNLEESFDVIRS 370
Query: 433 SNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIIS---HTEAAFGGVKESGLGREGSR 489
LA Y FT++ R + G + +N+ + HT FGGV ESG+G +
Sbjct: 371 RPKPLAAYLFTHNKKLKERFAATVSAGGIVVNDIAVHLALHT-LPFGGVGESGMGAYHGK 429
Query: 490 HGMEEFTQIKYMCFGNL 506
+ F+ K + + +L
Sbjct: 430 FSFDAFSHKKAVLYRSL 446
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 116 bits (293), Expect = 5e-28
Identities = 119/474 (25%), Positives = 180/474 (37%), Gaps = 101/474 (21%)
Query: 31 QAYINGEWVHSSKK-FPVYNPANDEHLADVPDMGV---EDVQYAIMSAKEAFEQWSQTTP 86
Q+Y+ G+W + +++ E +A V G+ V YA A T
Sbjct: 2 QSYVAGQWHAGTGDGRTLHDAVTGEVVARVSSEGLDFAAAVAYAREKGGPALRAL---TF 58
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVD---------WFS 137
ER +LK K L K+ L + +S++D ++
Sbjct: 59 HERAAMLKALAKYLMERKEDLYALSAATGA----------TRRDSWIDIDGGIGTLFAYA 108
Query: 138 EEARRTYGELVPSPVK--------SKE-------LLMVREPLGVVGLITPWNFPMAMITR 182
RR EL + SK+ +L R GV I +NFP+ +
Sbjct: 109 SLGRR---ELPNAHFLVEGDVEPLSKDGTFVGQHILTPRR--GVAVHINAFNFPVWGMLE 163
Query: 183 KVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQI-PKGVLNVVTSSRTNANSVGKLLC 241
K APAL AG ++KPA T A+ E+ + P+G L ++ SVG LL
Sbjct: 164 KFAPALLAGVPVIVKPATATAYLTEAVVKDIVESGLLPEGALQLI------CGSVGDLL- 216
Query: 242 TSPHVAG---ISFTGSTQVGKILYSH---CSQGIKRLSLE--------LGGNAP------ 281
H+ ++FTGS L +H ++ I R + E LG +A
Sbjct: 217 --DHLGEQDVVAFTGSAATAAKLRAHPNIVARSI-RFNAEADSLNAAILGPDATPGTPEF 273
Query: 282 --FIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQ 339
F+ K V+ M K GQ C A R + E D +E LK + K +
Sbjct: 274 DLFV--------KEVAREMTVK---AGQKCTAIRRAFVPEARVDAVIEALKARLAKVVV- 321
Query: 340 GDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK------VTKLGSKFFAP 393
GD + +GPL++ Q E V + V + A+V+ GG FF P
Sbjct: 322 GDPR-LEGVRMGPLVSREQREDVRAAV-ATLLAEAEVVFGGPDRFEVVGADAEKGAFFPP 379
Query: 394 TILTNITPDM--LCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
T+L PD + E FGPVA + + + E++ +A L TND
Sbjct: 380 TLLLCDDPDAATAVHDVEAFGPVATLMPYDSLAEAIELAARGRGSLVASVVTND 433
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 116 bits (293), Expect = 6e-28
Identities = 125/478 (26%), Positives = 200/478 (41%), Gaps = 43/478 (8%)
Query: 32 AYINGEWVHSSKKFPVYNPANDEH-LADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
I G+ V + P + H LA V+ AI +A EA ++W++ ++R
Sbjct: 35 LVIGGKEVRTGNTGKQVMPHDHAHVLATYHYADAALVEKAIEAALEARKEWARMPFEDRA 94
Query: 91 IVLKRWLKELEGNKQA--LAEIMTQESGKPPTESLGEVVYANSFVDWF---SEEARRTYG 145
+ + L G + A M + GK ++ E+ A +D+ + A Y
Sbjct: 95 AIFLKAADLLSGKYRYELNAATMLGQ-GKNVWQA--EIDAACELIDFLRFNVKYAEELYA 151
Query: 146 ELVPSPVKSKELLMVREPL-GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
+ S + PL G V ++P+NF APAL G + KP++ L
Sbjct: 152 QQPLSSPAGVWNRLEYRPLEGFVYAVSPFNFTAIGGNLAGAPALM-GNVVLWKPSDTAVL 210
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
+ + + EA +P GV+N V VG + SPH+AG+ FTGST K L+
Sbjct: 211 SNYLVYKILEEAGLPPGVINFVPGD---GPVVGDTVLASPHLAGLHFTGSTPTFKSLWKQ 267
Query: 265 CSQGIK------RLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQ 318
+ + R+ E GG +V+ +A++ V+ + F GQ C AA+R +
Sbjct: 268 IGENLDRYRTYPRIVGETGGKNFHLVHPSADVDSLVTATVRGAFEYQGQKCSAASRAYVP 327
Query: 319 EQVFDQFVEMLKVEITKSFIQGDTSKNDKCN-LGPLINLAQVEKVDSIVQDAISKGAKVI 377
E ++ + E L +E K GD D N +G +I+ +++ + A S I
Sbjct: 328 ESLWPEVKERL-LEELKEIKMGDPD--DFSNFMGAVIDEKAFDRIKGYIDHAKSDPEAEI 384
Query: 378 LGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE--EESLCVANNSNT 435
+ GGK F PT++ P TEE+FGPV + EE+L + + ++
Sbjct: 385 IAGGKCDDSVGYFVEPTVIETTDPKHKLMTEEIFGPVLTVYVYPDSDFEETLELVDTTSP 444
Query: 436 -GLAGYFFTND---ISQAWRVGKKLQ--VGMVGINEGIISHTEAA-----FGGVKESG 482
L G F D I +A L+ G IN+ T A FGG + SG
Sbjct: 445 YALTGAIFAQDRKAIREA---TDALRNAAGNFYIND---KPTGAVVGQQPFGGARASG 496
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 108 bits (270), Expect = 2e-25
Identities = 76/389 (19%), Positives = 140/389 (35%), Gaps = 52/389 (13%)
Query: 67 VQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGE- 125
+ A+++A + + + +R L R ++ L +A +GK
Sbjct: 1 PERALLAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKG-WMFAENI 59
Query: 126 ------------VVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPW 173
V+Y+ ++ R P G V +I +
Sbjct: 60 CGDQVQLRARAFVIYSYRIPHEPGNH---------LGQGLKQQSHGYRWPYGPVLVIGAF 110
Query: 174 NFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQI-PKGVLNVVTSSRTN 232
NFP+ + ++A ALA G ++KP + + L H A + P + ++
Sbjct: 111 NFPLWIPLLQLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPEDVTLINGDGKT 170
Query: 233 ANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQK 292
+ L P+ + FTGS++V + L Q R+ LEL G ++ +A
Sbjct: 171 MQA----LLLHPNPKMVLFTGSSRVAEKLALDAKQA--RIYLELAGFNWKVLGPDAQAVD 224
Query: 293 AVSGAMAAK-FRNCGQACVAANRFLIQEQVFDQ-FVEMLKVEITKSFIQGDTSKNDKCNL 350
V+ GQ C A + + E VE LK + + ++ L
Sbjct: 225 YVAWQCVQDMTACSGQKCTAQSMLFVPENWSKTPLVEKLKALLARRKLEDLL-------L 277
Query: 351 GPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKF------FAPTILTNITPDM- 403
GP+ Q +++ + V+L GK K S A + I +
Sbjct: 278 GPV----QTFTTLAMIAHMENLLGSVLLFSGKELKNHSIPSIYGACVASALFVPIDEILK 333
Query: 404 --LCYTEEVFGPVAVCIKFKTEEESLCVA 430
TEE+FGP A+ +++K ++ +L +
Sbjct: 334 TYELVTEEIFGPFAIVVEYKKDQLALVLE 362
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 105 bits (263), Expect = 6e-24
Identities = 114/445 (25%), Positives = 180/445 (40%), Gaps = 51/445 (11%)
Query: 31 QAYINGEWVH-SSKKFPVYNPANDEHLADVPDMGV---EDVQYAIMSAKEAFEQWSQTTP 86
Q+Y++GEW + PV + + E LA V G+ V +A A T
Sbjct: 2 QSYLSGEWRTGQGEGVPVRDASTGEVLARVTSEGLDVAAAVAWAREVGGPALRA---LTF 58
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARR---- 142
ER +LK + L K+AL + +G ++ ++ + +S RR
Sbjct: 59 HERARMLKALAQYLSERKEALYALAAT-TGATRRDNWVDIDGGIGTLFTYSSLGRRELPD 117
Query: 143 ----TYGELVPSPVKSKELLMVREPL-----GVVGLITPWNFPMAMITRKVAPALAAGCT 193
E P SK+ + GV I +NFP+ + K APA AG
Sbjct: 118 ANLIPEDEFEPL---SKDGSFQGRHILTPKGGVAVQINAFNFPVWGLLEKFAPAFLAGVP 174
Query: 194 CVIKPAEDTPLTALALAALAHEAQI-PKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFT 252
+ KPA T A AL E+ + P+G L ++ S G LL H ++FT
Sbjct: 175 TLAKPATPTAYVAEALVRTMVESGLLPEGSLQLICG------SAGDLLDHLDHRDVVAFT 228
Query: 253 GSTQVGKILYSH---CSQGIKRLSLE--------LGGNAPFIVYSNANLQKAVSGAMAAK 301
GS L +H +GI R + E LG +A + + + K
Sbjct: 229 GSAATADRLRAHPNVLERGI-RFNAEADSLNAAILGEDATPDEPEFDLFAQEIVRELTIK 287
Query: 302 FRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEK 361
GQ C A R ++ + + + ++ L+ + K + GD + + ++GPL++L Q
Sbjct: 288 ---AGQKCTAIRRVIVPKALLEAVLKALQARLAK-VVLGD-PREEGVDMGPLVSLEQRAD 342
Query: 362 VDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDM-LCYTEEVFGPVAVCIKF 420
V++ V ++ GA+V LGG L FF PT+L P + E FGPVA +
Sbjct: 343 VEAAVAALLAAGAEVRLGGPGR--LDGAFFPPTLLLAEDPWAGAVHATEAFGPVATFFPY 400
Query: 421 KTEEESLCVANNSNTGLAGYFFTND 445
E+ +A L T+D
Sbjct: 401 GDRAEAARLAARGGGSLVATLATSD 425
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 103 bits (258), Expect = 1e-23
Identities = 95/397 (23%), Positives = 143/397 (36%), Gaps = 71/397 (17%)
Query: 74 AKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGE-------- 125
A AFE + +P R L+ E+E L E+G P GE
Sbjct: 8 AAAAFESYRALSPARRAAFLEAIADEIEALGDELVARAHAETGLPEARLQGELGRTTGQL 67
Query: 126 -----VVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMI 180
+V S++D + A + +P P +L + PLG V + NFP+A
Sbjct: 68 RLFADLVREGSWLDARIDPADPD-RQPLPRP----DLRRMLVPLGPVAVFGASNFPLAFS 122
Query: 181 TR--KVAPALAAGCTCVIKPAEDTPLTALALAALAHEA----QIPKGVLNVVTSSRTNAN 234
A ALAAGC V+K P T+ +A A +P GV +++
Sbjct: 123 VAGGDTASALAAGCPVVVKAHPAHPGTSELVARAIRAALRATGLPAGVFSLLQGGG---R 179
Query: 235 SVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLS-----LELGGNAPFIVYSNAN 289
VG L P + + FTGS + G+ L+ + R ELG P + A
Sbjct: 180 EVGVALVKHPAIKAVGFTGSRRGGRALFDAAA---ARPEPIPFYAELGSVNPVFILPGA- 235
Query: 290 LQKAVSGAMAAKF-----RNCGQAC-----VAANRFLIQEQVFDQFVEMLKVEITKSFIQ 339
A+A F GQ C V + D F+ L + +
Sbjct: 236 -LAERGEAIAQGFVGSLTLGAGQFCTNPGLV----LVPAGPAGDAFIAALAEALAAA--- 287
Query: 340 GDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTIL--- 396
+ L P I A + V+++ G +V+ GG APT+
Sbjct: 288 -----PAQTMLTPGIAEAYRQGVEALAAAP---GVRVLAGGAAAEGGNQ--AAPTLFKVD 337
Query: 397 --TNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVAN 431
+ L EEVFGP ++ +++ E L VA
Sbjct: 338 AAAFLADPAL--QEEVFGPASLVVRYDDAAELLAVAE 372
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 100 bits (251), Expect = 2e-22
Identities = 120/457 (26%), Positives = 185/457 (40%), Gaps = 68/457 (14%)
Query: 31 QAYINGEWVH-SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKE----AFEQWSQTT 85
Y+ G W S P+++P E L V G+ D+ A A+E A T
Sbjct: 6 ANYVAGRWQAGSGAGTPLFDPVTGEELVRVSATGL-DLAAAFAFAREQGGAALRA---LT 61
Query: 86 PKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES-------LGEVVYANSFVDWFSE 138
+R +L +K L+ N+ A +I T SG +S + + Y +
Sbjct: 62 YAQRAALLAAIVKVLQANRDAYYDIATANSGTTRNDSAVDIDGGIFTLGYYAKLGAALGD 121
Query: 139 EARRTYGE---LVPSPV-KSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTC 194
GE L P + + +L+ GV I +NFP + K APAL AG
Sbjct: 122 ARLLRDGEAVQLGKDPAFQGQHVLVPTR--GVALFINAFNFPAWGLWEKAAPALLAGVPV 179
Query: 195 VIKPAEDTPLTALALAALAHEAQI-PKGVLNVVTSSRTNANSVGKLLCTSPHVAG---IS 250
++KPA T + A I P G L+VV S LL H+ +S
Sbjct: 180 IVKPATATAWLTQRMVKDVVAAGILPAGALSVV------CGSSAGLL---DHLQPFDVVS 230
Query: 251 FTGSTQVGKILYSHCS--QGIKRLSLE--------LG-----GNAPFIVYSNANLQKAVS 295
FTGS + +L SH + Q R+++E LG G+ F K V
Sbjct: 231 FTGSAETAAVLRSHPAVVQRSVRVNVEADSLNSALLGPDAAPGSEAF-----DLFVKEVV 285
Query: 296 GAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLIN 355
M K GQ C A R + E ++D E L + K+ + G+ +ND +GPL++
Sbjct: 286 REMTVK---SGQKCTAIRRIFVPEALYDAVAEALAARLAKTTV-GN-PRNDGVRMGPLVS 340
Query: 356 LAQVEKVDSIVQDAISKGAKVILGGGKVTKLG-----SKFFAPTILTNITPD--MLCYTE 408
AQ+ V + + A+ A+V+ GG + + PT+L PD +
Sbjct: 341 RAQLAAVRAGLA-ALRAQAEVLFDGGGFALVDADPAVAACVGPTLLGASDPDAATAVHDV 399
Query: 409 EVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
EVFGPVA + ++ +L +A L +++D
Sbjct: 400 EVFGPVATLLPYRDAAHALALARRGQGSLVASVYSDD 436
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 93.8 bits (234), Expect = 3e-20
Identities = 118/475 (24%), Positives = 185/475 (38%), Gaps = 103/475 (21%)
Query: 31 QAYINGEWVHSSKK-FPVYNPANDEHLADVPDMGV---EDVQYAIMSAKEAFEQWSQTTP 86
Q+Y+ G W + P+++ E +A V G+ + YA A T
Sbjct: 6 QSYVAGRWQTGQGEGRPLHDAVTGEPVARVSSEGLDFAAALAYAREVGGPALRAL---TF 62
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVD---------WFS 137
ER +LK K L K+ L + Q +G T +S++D ++
Sbjct: 63 HERAAMLKALAKYLLERKEELYALSAQ-TGA--TR-------RDSWIDIEGGIGTLFTYA 112
Query: 138 EEARRTYGELVPSPVK--------SKE-------LLMVREPLGVVGLITPWNFPMAMITR 182
+ RR EL V SK +L E GV I +NFP+ +
Sbjct: 113 SKGRR---ELPNDTVLVEGEVEPLSKGGTFAGRHILTPLE--GVAVHINAFNFPVWGMLE 167
Query: 183 KVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQI-PKGVLNVVTSSRTNANSVGKLLC 241
K+APA AG ++KPA T A+ L E+ + P+G L ++ S G LL
Sbjct: 168 KLAPAFLAGVPAIVKPATATAYLTEAVVRLIVESGLLPEGALQLICGS------AGDLL- 220
Query: 242 TSPHVAG---ISFTGSTQVGKILYSH---CSQGIKRLSLE--------LG-----GNAPF 282
H+ G ++FTGS + L +H + + + E LG G F
Sbjct: 221 --DHLDGQDVVTFTGSAATAQKLRAHPNVVANSV-PFTAEADSLNAAILGPDATPGTPEF 277
Query: 283 IVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDT 342
++ K V M K GQ C A R ++ + D +E L+ + K + GD
Sbjct: 278 DLFV-----KEVVREMTVK---AGQKCTAIRRAIVPRALVDAVIEALRARLAKVVV-GD- 327
Query: 343 SKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG-------GKVTKLGSKFFAPTI 395
+ + +G L +L Q E V V A+ A+++ GG G + G+ FF PT+
Sbjct: 328 PRLEGVRMGALASLEQREDVREKV-AALLAAAEIVFGGPDSFEVVGADAEKGA-FFPPTL 385
Query: 396 LTNITPDMLCYTEEV-----FGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
L P V FGPV+ + + +E++ +A L T D
Sbjct: 386 LYCDDPL---EAPAVHDVEAFGPVSTLMPYDDLDEAIELAARGKGSLVASLVTAD 437
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 64.8 bits (158), Expect = 4e-11
Identities = 98/435 (22%), Positives = 169/435 (38%), Gaps = 72/435 (16%)
Query: 33 YINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK--ER- 89
+ G+W +S + +P N + VPD +++ + S ++ + K ER
Sbjct: 2 LVAGKWKGASNYTTLLDPLNGDKFISVPDTDEDEINEFVDSLRQCPKSGLHNPLKNPERY 61
Query: 90 ---GIVLKRWLKELEGNKQA--LAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARR-- 142
G V R EL + A ++ + + K ++LGEVV F++ F+ + R
Sbjct: 62 LLYGDVSHRVAHELRKPEVEDFFARLIQRVAPKSDAQALGEVVVTRKFLENFAGDQVRFL 121
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
VP + ++ R P G V +ITP+NFP+ + ++ AL G ++K
Sbjct: 122 ARSFNVPGDHQGQQSSGYRWPYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKV 181
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
+ L H +P ++++ S N + LL +P + FTGS++V
Sbjct: 182 SVVMEQFLRLLHLCGMPATDVDLIHSDGPTMNKI--LLEANPRM--TLFTGSSKVA---- 233
Query: 263 SHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSG----------------AMAAKFRNCG 306
+RL+LEL G + +A + G A A G
Sbjct: 234 -------ERLALELHGK---VKLEDAGFDWKILGPDVSDVDYVAWQCDQDAYACS----G 279
Query: 307 QACVAANRFLIQEQVFDQ-FVEMLKVEITKSFIQGDTSKNDKCNLGPLI---NLAQVEKV 362
Q C A + E ++ LK + ++ T +GP++ ++ V
Sbjct: 280 QKCSAQSILFAHENWVQAGILDKLKALAEQRKLEDLT-------IGPVLTWTTERILDHV 332
Query: 363 DSIVQDAISKGAKVILGGGKVTK----------LGSKFFAPTILTNITPDMLCYTEEVFG 412
D ++ GAKV+ GG +T + F P I + T EVFG
Sbjct: 333 DKLLA---IPGAKVLFGGKPLTNHSIPSIYGAYEPTAVFVPLEEIAIEENFELVTTEVFG 389
Query: 413 PVAVCIKFKTEEESL 427
P V ++K E+ L
Sbjct: 390 PFQVVTEYKDEQLPL 404
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 61.1 bits (148), Expect = 4e-10
Identities = 72/339 (21%), Positives = 122/339 (35%), Gaps = 51/339 (15%)
Query: 64 VEDVQYAIMSAKEAFE----QWSQTTPKERGIVLKR----WLKELEGNKQALAEIMTQES 115
E I + A + + ERG ++ W+ + ++ L + + E
Sbjct: 15 DEQRDLIINAIANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESKLYKNIDTER 74
Query: 116 GKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNF 175
G + L+P + E + P+GV I P
Sbjct: 75 GITASVG-------------------HIQDVLLPD---NGETYVRAFPIGVTMHILPSTN 112
Query: 176 PMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANS 235
P++ IT +A C+ +P P T ALA L A G +V ++
Sbjct: 113 PLSGIT-SALRGIATRNQCIFRPHPSAPFTNRALALLFQAADAAHGPKILVLYVPHPSDE 171
Query: 236 VGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVS 295
+ + L + P + I TG H S I + GN+P +V A+ ++A
Sbjct: 172 LAEELLSHPKIDLIVATGGRDAVDAAVKH-SPHIPVIGFG-AGNSPVVVDETADEERASG 229
Query: 296 GAMAAKFRNCGQACVAANRFLIQEQV----FDQF-----VEMLKV-EITKSFIQGDTSKN 345
+KF + AC + + + V +++F VE LKV + TK + T
Sbjct: 230 SVHDSKFFD-QNACASEQNLYVVDDVLDPLYEEFKLKLVVEGLKVPQETKPLSKETTPSF 288
Query: 346 DKC---NLGPLINLAQVEKVDSIVQDAISKGAKVILGGG 381
D ++ PL +V V S V++A +I GG
Sbjct: 289 DDEALESMTPLECQFRVLDVISAVENAW----MIIESGG 323
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 56.0 bits (135), Expect = 3e-08
Identities = 102/473 (21%), Positives = 172/473 (36%), Gaps = 76/473 (16%)
Query: 61 DMGVE----DVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAE------- 109
++GV D + +A A W + R V L+ L +A
Sbjct: 76 ELGVTYPQCDGDALLDAAHAALPGWRDAGARARAGVCLEILQRLNARSFEIAHAVMHTTG 135
Query: 110 ---IMTQESGKPPTESLG--EVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPL 164
+M ++G P + G V YA + E A + P+K K+ + P
Sbjct: 136 QAFMMAFQAGGPHAQDRGLEAVAYAYREMSRIPETAVWEKPQGKNDPLKLKKRFTI-VPR 194
Query: 165 GVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL- 223
G+ +I FP + +LA G ++KP A+ LA Q+ + VL
Sbjct: 195 GIALVIGCSTFPTWNTYPGLFASLATGNPVLVKPHPG------AILPLALTVQVAREVLG 248
Query: 224 ------NVVT-SSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLEL 276
N+VT ++ + + L T P V I FTGS G+ L + Q ++ E
Sbjct: 249 EAGFDPNLVTLAAFDPGHEAAQRLATDPAVRIIDFTGSNAFGQWLEQNARQA--QVYTEK 306
Query: 277 GGNAPFIVYSNANLQKAVSGAMAAKFRNC---GQACVAANRFLI--------QEQV-FDQ 324
G I+ S + KA+ +A F GQ C L+ Q + +D+
Sbjct: 307 AGVNTVIIESTDDY-KAMLRNLA--FSLSLYSGQMCTTTQAILVPRDGIRTDQGRKSYDE 363
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCN--LGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
L I + GD + LG + + + + + +A + G +V+L K
Sbjct: 364 VAADLATAIDG--LLGD---PARATAVLGAIQSPDTLAR----IAEARALG-EVLLASTK 413
Query: 383 VTKL---GSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNS---NTG 436
+ G++ P +L D Y +E FGP+A + ++ +A S
Sbjct: 414 IEHPEFPGARVRTPLLLKCDAADEAAYMQERFGPIAFVVAVDDGAHAVELARRSVREKGA 473
Query: 437 LAGYFFTND-------ISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESG 482
+ +T D AW L + + G G+ + AAF +G
Sbjct: 474 MTVGAYTTDPEVVDAVQEAAWDAAVALSLNLTG---GVFVNQSAAFSDFHGTG 523
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 52.5 bits (126), Expect = 3e-07
Identities = 102/470 (21%), Positives = 168/470 (35%), Gaps = 84/470 (17%)
Query: 61 DMGVE----DVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAE------- 109
++GV D + +A+ A W + R V L+ L +A
Sbjct: 76 ELGVTYPQCDPDALLAAARAAMPGWRDAGARARAGVCLEILQRLNARSFEMAHAVMHTTG 135
Query: 110 ---IMTQESGKPPTESLG--EVVYANSFVDWFSEEARRTYGELVPSPVK-SKELLMVREP 163
+M ++G P + G V YA + A + P+ K +V P
Sbjct: 136 QAFMMAFQAGGPHAQDRGLEAVAYAWREMSRIPPTAEWEKPQGKHDPLAMEKTFTVV--P 193
Query: 164 LGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL 223
GV +I FP + +LA G ++KP P L LA Q+ + VL
Sbjct: 194 RGVALVIGCSTFPTWNGYPGLFASLATGNPVIVKPH---PAAILPLAI---TVQVAREVL 247
Query: 224 -------NVVT-SSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLE 275
N+VT ++ T + + L T P V I FTGS G L ++ Q ++ E
Sbjct: 248 AEAGFDPNLVTLAADTPEEPIAQTLATRPEVRIIDFTGSNAFGDWLEANARQ--AQVYTE 305
Query: 276 LGGNAPFIVYSNANLQKAVSGAMAAKFRNC---GQACVAANRFLI--------QEQV-FD 323
G +V S +L KA+ +A F GQ C + + FD
Sbjct: 306 KAGVNTVVVDSTDDL-KAMLRNLA--FSLSLYSGQMCTTPQNIYVPRDGIQTDDGRKSFD 362
Query: 324 QFVEMLKVEITKSFIQGDTSKNDKCN--LGPLIN---LAQVEKVDSIVQDAISKGAKVIL 378
+ L I + D + LG + + LA++ + + +V+L
Sbjct: 363 EVAADLAAAIDG--LLAD---PARAAALLGAIQSPDTLARIAEA--------RQLGEVLL 409
Query: 379 GGGKVTK---LGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNS-- 433
V ++ P +L D Y EE FGP+A + + + S+ +A S
Sbjct: 410 ASEAVAHPEFPDARVRTPLLLKLDASDEAAYAEERFGPIAFVVATDSTDHSIELARESVR 469
Query: 434 -NTGLAGYFFTND-------ISQAWRVGKKLQVGMVGINEGIISHTEAAF 475
+ + ++ D A G L + + G G+ + AAF
Sbjct: 470 EHGAMTVGVYSTDPEVVERVQEAALDAGVALSINLTG---GVFVNQSAAF 516
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 51.4 bits (123), Expect = 8e-07
Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 21/275 (7%)
Query: 64 VEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL 123
++ V+ I SAK A ++ + T ++ ++K + N LA++ +E+G E
Sbjct: 7 IQQVRNLIRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWE-- 64
Query: 124 GEVVYANSFVDWFSEEA---RRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMI 180
+ V N F ++ +T G L S K K+++ + P+GVV + P P +
Sbjct: 65 -DKVIKNVFAATIVYDSIKDMKTIGIL--SEDKEKKVIEIAVPVGVVAGLIPSTNPTSTA 121
Query: 181 TRKVAPALAAGCTCVIKP----AEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSV 236
K ++ A V P + T + A EA P+G + +T +
Sbjct: 122 IYKTLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIGCITVPTIEGTNE 181
Query: 237 GKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELG-GNAPFIVYSNANLQKAVS 295
L + + I TG + K YS + I +G GN P + AN++KAV
Sbjct: 182 ---LMKNKDTSLILATGGEAMVKAAYSSGTPAIG-----VGPGNGPAYIERTANVKKAVR 233
Query: 296 GAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLK 330
+ +K + G C + +++E D VE LK
Sbjct: 234 DIIDSKTFDNGTICASEQSIIVEECNKDAVVEELK 268
>gnl|CDD|237956 PRK15398, PRK15398, aldehyde dehydrogenase EutE; Provisional.
Length = 465
Score = 46.4 bits (111), Expect = 3e-05
Identities = 85/352 (24%), Positives = 136/352 (38%), Gaps = 60/352 (17%)
Query: 49 NPANDEHLADVPDMGV-EDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQAL 107
+ A V +MGV V A+ +AK A +++ Q + R ++ + L + + L
Sbjct: 19 SSQTVSPPAAVGEMGVFASVDDAVAAAKVAQQRYQQKSLAMRQRIIDAIREALLPHAEEL 78
Query: 108 AEIMTQESGKPPTESLGEV---VYANSFVDWFSEEARRTYG--ELVPSPVKSKELLMVRE 162
AE+ +E+G +G V + N A +T G +L + L + E
Sbjct: 79 AELAVEETG------MGRVEDKIAKNVAA------AEKTPGVEDLTTEALTGDNGLTLIE 126
Query: 163 --PLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPK 220
P GV+G +TP P I LAAG + V P +L L +EA I
Sbjct: 127 YAPFGVIGAVTPSTNPTETIINNAISMLAAGNSVVFSPHPGAKKVSLRAIELLNEA-IVA 185
Query: 221 --GVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGG 278
G N+V + + L P +A + TG V K G K+ G
Sbjct: 186 AGGPENLVVTVAEPTIETAQRLMKHPGIALLVVTGGPAVVKAAM---KSG-KKAIGAGAG 241
Query: 279 NAPFIVYSNANLQKA----VSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEIT 334
N P +V A+++KA V G A F N C+A ++ + V D+ + +++
Sbjct: 242 NPPVVVDETADIEKAARDIVKG---ASFDN-NLPCIAEKEVIVVDSVADELMRLME---- 293
Query: 335 KSFIQGDTSKNDKCNLGPLINLAQVEKVDSIV--------QDAISKGAKVIL 378
KN L+ Q EK+ +V + + K A IL
Sbjct: 294 ---------KNGAV----LLTAEQAEKLQKVVLKNGGTVNKKWVGKDAAKIL 332
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 41.8 bits (99), Expect = 6e-04
Identities = 71/283 (25%), Positives = 111/283 (39%), Gaps = 37/283 (13%)
Query: 63 GV-EDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTE 121
GV V A+ +AK A +Q+ + T +R +++ + L N + LAE+ +E+G
Sbjct: 1 GVFATVDDAVAAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAEMAVEETG----- 55
Query: 122 SLGEV---VYANSFVDWFSEEARRTYGE--LVPSPVKSKE---LLMVREPLGVVGLITPW 173
+G V + N A +T G L + S + L+ P GV+G ITP
Sbjct: 56 -MGRVEDKIAKNHLA------AEKTPGTEDLTTT-AWSGDNGLTLVEYAPFGVIGAITPS 107
Query: 174 NFPMAMITRKVAPALAAGCTCVIKP---AEDTPLTALAL--AALAHEAQIPKGVLNVVTS 228
P I LAAG V P A+ A+ L A+A V+ V
Sbjct: 108 TNPTETIINNSISMLAAGNAVVFNPHPGAKKVSAYAVELINKAIAEAGGPDNLVVTVEEP 167
Query: 229 SRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNA 288
+ N L P + + TG V K S K+ GN P +V A
Sbjct: 168 TIETTNE----LMAHPDINLLVVTGGPAVVKAALSSG----KKAIGAGAGNPPVVVDETA 219
Query: 289 NLQKAVSGAMA-AKFRNCGQACVAANRFLIQEQVFDQFVEMLK 330
+++KA + A F N C+A + + V D + ++
Sbjct: 220 DIEKAARDIVQGASFDN-NLPCIAEKEVIAVDSVADYLIAAMQ 261
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 40.9 bits (97), Expect = 0.001
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 162 EPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKP----AEDTPLTALALAALAHEAQ 217
EP+GV+ + P P + K AL + P + + A + A A
Sbjct: 94 EPVGVIAALIPSTNPTSTAIFKALIALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVAAG 153
Query: 218 IPKG---VLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSL 274
P+G + + T L P V I TG + K YS G + ++
Sbjct: 154 APEGLIQWIEEPSIELTQE------LMKHPDVDLILATGGPGMVKAAYS---SG--KPAI 202
Query: 275 ELG-GNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLK 330
+G GN P + A++++AV + +K + G C + ++ ++++D+ LK
Sbjct: 203 GVGPGNVPAYIDETADIKRAVKDIILSKTFDNGTICASEQSVIVDDEIYDEVRAELK 259
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 40.3 bits (94), Expect = 0.002
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 31/274 (11%)
Query: 70 AIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYA 129
A+ +AK A + S + + ++ + + E + LA++ E+G E + V
Sbjct: 4 AVAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSETGMGRVE---DKVIK 60
Query: 130 NSFVDWFSEEARRTYG----ELVPSPVKSKE---LLMVREPLGVVGLITPWNFPMAMITR 182
N F A Y E + E L++ EP+GVV ITP P + +
Sbjct: 61 NHF------AAEYIYNVYKDEKTCGVLTGDENGGTLIIAEPIGVVASITPSTNPTSTVIF 114
Query: 183 KVAPALAAGCTCVIKP---AEDTPLTALAL---AALAHEAQIPKGVLNVVTSSRTNANSV 236
K +L + + P A+ A L AA+A A P+ ++ + + +
Sbjct: 115 KSLISLKTRNSIIFSPHPRAKKVTQRAATLLLQAAVA--AGAPENLIGWIDNPSI---EL 169
Query: 237 GKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSG 296
+ L P + + TG V K YS K GN P ++ A++++AV
Sbjct: 170 AQRLMKFPGIGLLLATGGPAVVKAAYSSG----KPAIGVGAGNTPVVIDETADIKRAVQS 225
Query: 297 AMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLK 330
+ +K + G C + ++ + V+D+ + + +
Sbjct: 226 IVKSKTFDNGVICASEQSVIVVDSVYDEVMRLFE 259
>gnl|CDD|215908 pfam00413, Peptidase_M10, Matrixin. The members of this family
are enzymes that cleave peptides. These proteases
require zinc for catalysis.
Length = 159
Score = 33.4 bits (77), Expect = 0.13
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
PD+ ++V+ AI + AF+ WS+ TP
Sbjct: 16 PDLSRDEVRRAI---RRAFKVWSEVTP 39
>gnl|CDD|219366 pfam07295, DUF1451, Protein of unknown function (DUF1451). This
family consists of several hypothetical bacterial
proteins of around 160 residues in length. Members of
this family contain four highly conserved cysteine
resides toward the C-terminal region of the protein. The
function of this family is unknown.
Length = 148
Score = 32.2 bits (74), Expect = 0.29
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 54 EHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIV---LKRWLKELEGNKQALAEI 110
+ L++ ++++ AI AKE + + T +E ++ LKR L+E + +
Sbjct: 3 DRLSERLKHTEKELKEAIEQAKEYLQAAEELTREELALIGAYLKRDLEEFLRSYE----- 57
Query: 111 MTQESGKPPTESLGEVVYANSFVDWFSEEARRT 143
E+G+ S + S DW S RT
Sbjct: 58 ---ETGEADWLSPDLQLIEESLWDWLSSITDRT 87
>gnl|CDD|215751 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).
Length = 269
Score = 32.3 bits (74), Expect = 0.43
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 349 NLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
N LI+ + +VD +V AI G VI+
Sbjct: 52 NPDYLIDENWLNRVDEVVDYAIDNGMYVII 81
>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution
of the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
(beta-hydroxyethyl) thiazole phosphate to yield thiamine
phosphate. TenI is a enzymatically inactive regulatory
protein involved in the regulation of several
extracellular enzymes. This superfamily also contains
other enzymatically inactive proteins with unknown
functions.
Length = 196
Score = 32.1 bits (74), Expect = 0.48
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 169 LITPWNFPMAMITRKVAPALAAGCTCVI---KPAEDTPLTALA--LAALAHEAQIP 219
LIT + V AL G T V K L LA L L + +P
Sbjct: 3 LITDRRLDGEDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58
>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 32.1 bits (74), Expect = 0.48
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 169 LITP-WNFPMAMITRKVAPALAAGCTCV---IKPAEDTPLTALA--LAALAHEAQIP 219
LIT + + V AL G T V K + LA L L +P
Sbjct: 11 LITDSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVP 67
>gnl|CDD|199855 cd06229, M14_Endopeptidase_I, Peptidase M14 carboxypeptidase
family-like domain of Endopeptidase I. Peptidase
M14-like domain of Gamma-D-glutamyl-L-diamino acid
endopeptidase 1 (also known as
Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and
Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member
of the M14 family of metallocarboxypeptidases (MCPs).
However it has an exceptional type of activity of
hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid
(gamma-D-Glu-Dap) bond of
L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and
L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala
peptides. ENP1has a different substrate specificity and
cellular role than MpaA (MpaA does not belong to this
group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of
MurNAc-tripeptide and MurNAc-tetrapeptide, as well as
the amide bond of free tripeptide and tetrapeptide .
ENP1 is active on spore cortex peptidoglycan, and is
produced at stage IV of sporulation in forespore and
spore integuments.
Length = 256
Score = 30.7 bits (70), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 105 QALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARR 142
Q +AE++ + SG +S + Y + DWF ++ RR
Sbjct: 190 QKMAELLAELSGYELVDSEPKASYG-GYKDWFIQKFRR 226
>gnl|CDD|143399 cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC. Acyl-CoA
reductase, LuxC, (EC=1.2.1.50) is the fatty acid
reductase enzyme responsible for synthesis of the
aldehyde substrate for the luminescent reaction
catalyzed by luciferase. The fatty acid reductase, a
luminescence-specific, multienzyme complex (LuxCDE),
reduces myristic acid to generate the long chain fatty
aldehyde required for the luciferase-catalyzed reaction
resulting in the emission of blue-green light.
Mutational studies of conserved cysteines of LuxC
revealed that the cysteine which aligns with the
catalytic cysteine conserved throughout the ALDH
superfamily is the LuxC acylation site. This CD is
composed of mainly bacterial sequences but also includes
a few archaeal sequences similar to the Methanospirillum
hungateiacyl acyl-CoA reductase RfbN.
Length = 422
Score = 30.7 bits (70), Expect = 1.8
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 18/130 (13%)
Query: 92 VLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA-----RRTYG- 145
KR L +Q ++ +G + + F E R G
Sbjct: 36 AGKRLLDPDYPLRQQAERLLPTVTGYSEEMLREGLKRL---MALFRRENLERILERELGS 92
Query: 146 -----ELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
E VP + +P G+V I N P+ + + L ++K +
Sbjct: 93 PGILDEWVPPGRGG---YIRAQPRGLVVHIIAGNVPLLPVW-SIVRGLLVKNVNLLKMSS 148
Query: 201 DTPLTALALA 210
PLTA AL
Sbjct: 149 SDPLTATALL 158
>gnl|CDD|217120 pfam02581, TMP-TENI, Thiamine monophosphate synthase/TENI.
Thiamine monophosphate synthase (TMP) (EC:2.5.1.3)
catalyzes the substitution of the pyrophosphate of
2-methyl-4-amino-5- hydroxymethylpyrimidine
pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole
phosphate to yield thiamine phosphate. This Pfam family
also includes the regulatory protein TENI.
Length = 180
Score = 30.2 bits (69), Expect = 1.8
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 169 LITPWNFPMAMITRKVAPALAAGCTCVI---KPAEDTPLTALA--LAALAHEAQIP 219
L+T + V AL G T V K +D L LA L AL + +P
Sbjct: 3 LVTDPGLDGEDLLEVVEEALKGGVTIVQLREKDLDDRELLELAERLRALCRKYGVP 58
>gnl|CDD|113011 pfam04221, RelB, RelB antitoxin. RelE and RelB form a
toxin-antitoxin system. RelE represses translation,
probably through binding ribosomes. RelB stably binds
RelE, presumably deactivating it.
Length = 83
Score = 28.2 bits (63), Expect = 2.8
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYAN 130
GI L+ E N++ L IM E+G ++ N
Sbjct: 40 LTGGIPFD--LRLPEPNQRTLVAIMELEAGNDEHKAKSVEKTLN 81
>gnl|CDD|239805 cd04278, ZnMc_MMP, Zinc-dependent metalloprotease, matrix
metalloproteinase (MMP) sub-family. MMPs are
responsible for a great deal of pericellular
proteolysis of extracellular matrix and cell surface
molecules, playing crucial roles in morphogenesis, cell
fate specification, cell migration, tissue repair,
tumorigenesis, gain or loss of tissue-specific
functions, and apoptosis. In many instances, they are
anchored to cell membranes via trans-membrane domains,
and their activity is controlled via TIMPs (tissue
inhibitors of metalloproteinases).
Length = 157
Score = 29.1 bits (66), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
PD+ +DV+ AI AF WS TP
Sbjct: 16 PDLPRDDVRRAI---ARAFRVWSDVTP 39
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the
addition of galactose or glucose residues to the
lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of
the bacterial cell surface. The members of this family
of glycosyltransferases catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface. The enzymes exhibit broad substrate
specificities. The known functions found in this family
include: Alpha-1,4-galactosyltransferase,
LOS-alpha-1,3-D-galactosyltransferase,
UDP-glucose:(galactosyl) LPS
alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl)
LPS alpha1,2-galactosyltransferase, and
UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase.
Alpha-1,4-galactosyltransferase from N. meningitidis
adds an alpha-galactose from UDP-Gal (the donor) to a
terminal lactose (the acceptor) of the LOS structure of
outer membrane. LOSs are virulence factors that enable
the organism to evade the immune system of host cells.
In E. coli, the three alpha-1,2-glycosyltransferases,
that are involved in the synthesis of the outer core
region of the LPS, are all members of this family. The
three enzymes share 40 % of sequence identity, but have
different sugar donor or acceptor specificities,
representing the structural diversity of LPS.
Length = 248
Score = 29.5 bits (67), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 413 PVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQ 457
+AV IK S+ ANNS Y +DIS+ + KKL+
Sbjct: 14 YLAVTIK------SIL-ANNSKRDYDFYILNDDISEENK--KKLK 49
>gnl|CDD|227918 COG5631, COG5631, Predicted transcription regulator, contains HTH
domain (MarR family) [Transcription].
Length = 199
Score = 29.2 bits (65), Expect = 3.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 55 HLADVPDMGVEDVQYAIMSAKEAFEQW 81
HLA V +V+YA+M A EAF +W
Sbjct: 42 HLARTLSPDVSEVEYALMRAYEAFGRW 68
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 29.3 bits (66), Expect = 5.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 336 SFIQGDTSKNDKCNLGPL-------------INLAQVEKVDSIVQDAISKGAKVILGGGK 382
+FI+G T + C +GP+ I ++ EK S+++D +S G L G
Sbjct: 268 TFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEK--SVIEDDVSVGPFSRLREGT 325
Query: 383 VTKLGSK 389
V K K
Sbjct: 326 VLKKSVK 332
>gnl|CDD|220933 pfam11001, DUF2841, Protein of unknown function (DUF2841). This
family of proteins with unknown function are all present
in yeast.
Length = 126
Score = 28.0 bits (63), Expect = 6.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 76 EAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPP 119
+AF+ Q K + K W+K +E KQA + KPP
Sbjct: 15 QAFKSLQQLNCKV---IAKAWIKLIEPKKQAKYPYNGGKKTKPP 55
>gnl|CDD|225548 COG3002, COG3002, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 880
Score = 29.1 bits (65), Expect = 6.5
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 51 ANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
AN E L +P A WSQ P+
Sbjct: 668 ANQERLPSLPLNHNHQAPPPKDEALRFAHDWSQVRPE 704
>gnl|CDD|225268 COG2404, COG2404, Predicted phosphohydrolase (DHH superfamily)
[General function prediction only].
Length = 339
Score = 28.2 bits (63), Expect = 9.8
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 306 GQACVAANRFLIQEQVFDQ-FVEMLKVEITKSFIQGDTSKNDKCNLGPL----INLAQVE 360
G AC A + + V++ F + I I ++ + + +NL + E
Sbjct: 12 GYACAAVVKRFFGKNVYNANFGREVSARIN--SILESAEESGIGDAILISDLDVNLDRFE 69
Query: 361 KVDSIVQDAISKGAKVIL 378
++ +++A +KG KV
Sbjct: 70 ELVEKLKEATNKGTKVKW 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,267,983
Number of extensions: 2445734
Number of successful extensions: 2987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2388
Number of HSP's successfully gapped: 160
Length of query: 507
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 406
Effective length of database: 6,457,848
Effective search space: 2621886288
Effective search space used: 2621886288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)