RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3132
(507 letters)
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 792 bits (2048), Expect = 0.0
Identities = 249/477 (52%), Positives = 343/477 (71%), Gaps = 2/477 (0%)
Query: 30 TQAYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKER 89
T +++ G W+ ++ FPV +PA+ L V D GV + + A+ +A EAF +W + + KER
Sbjct: 13 TDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKER 72
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP 149
+L++W + NK LA I+T ESGKP E+ GE++Y+ F++WFSEEARR YG+++
Sbjct: 73 SSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIH 132
Query: 150 SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALAL 209
+P K + L++++P+GV +ITPWNFP AMITRKV ALAAGCT V+KPAEDTP +ALAL
Sbjct: 133 TPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALAL 192
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
A LA +A IP GV NV+ SR NA VG+ +CT P V+ ISFTGST GKIL H + +
Sbjct: 193 AELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSV 252
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
KR+S+ELGG APFIV+ +AN+ +AV+GAMA+KFRN GQ CV +N+FL+Q + D FV+
Sbjct: 253 KRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAF 312
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK 389
+ K+ G+ + + GPLIN VEKV+ V DA+SKGA V+ GGK +LG
Sbjct: 313 AEAMKKNLRVGNGFE-EGTTQGPLINEKAVEKVEKQVNDAVSKGATVVT-GGKRHQLGKN 370
Query: 390 FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQA 449
FF PT+L N+T DMLC EE FGP+A IKF TEEE++ +AN ++ GLAGYF++ D +Q
Sbjct: 371 FFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQI 430
Query: 450 WRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFGNL 506
WRV ++L+VGMVG+NEG+IS E FGGVK+SGLGREGS++G++E+ ++KY+C+G L
Sbjct: 431 WRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLELKYVCYGGL 487
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 772 bits (1996), Expect = 0.0
Identities = 189/480 (39%), Positives = 264/480 (55%), Gaps = 7/480 (1%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
YI G W F VYNPA +A VP M EDV A+ + + A + +
Sbjct: 12 LTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSMPEEDVVAAVEAGQSALRLTNPWPIE 71
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
R L+ L+ N++ + I+ E GKP E+ GEV YA F D+ ++
Sbjct: 72 TRRKWLEDIRDGLKENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKHISALDSHT 131
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+P K + P+GV GLI PWNFP+ MI +K++ ALAAGC VIKPA +TPLT +
Sbjct: 132 IPEKPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSAALAAGCPSVIKPASETPLTMI 191
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
A ++ + +P G++N+V A+ +GK+LC V +SFTGST+VG+ L ++
Sbjct: 192 AFFSVMDKLDLPDGMVNLVMG---KASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDTAE 248
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
+K+L+LELGGNAPFIV+ +A+L+ A +A KFR GQ CV ANR + E+V D F +
Sbjct: 249 QVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVADAFGQ 308
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
L E GD ND ++GPLIN +KV +QDA+ KGA ++ G
Sbjct: 309 KL-AERVNKMTVGDGM-NDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGD 366
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
FF PT++ + +M CY EE FGP+ F+TEEE + N++ GLA Y FT D
Sbjct: 367 GLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEVIDAGNDTEFGLASYVFTADAE 426
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFGNLE 507
+A RV L+ G VG N G EA FGG+K SG+GREG G+ EF + + + G E
Sbjct: 427 RAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIGREGGLEGLFEFVEAQTVPRGFAE 486
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 769 bits (1989), Expect = 0.0
Identities = 229/477 (48%), Positives = 316/477 (66%), Gaps = 8/477 (1%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
QA INGEW+ ++ + V NPAN + L VP MG ++ + AI +A A W T K
Sbjct: 10 QQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAK 69
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
ER +L+ W + ++ LA +MT E GKP E+ GE+ YA SF++WF+EE +R YG+
Sbjct: 70 ERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDT 129
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+P K L+++++P+GV ITPWNFP AMITRK PALAAGCT V+KPA TP +AL
Sbjct: 130 IPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSAL 189
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
ALA LA A +P GV NVVT +A +VG L ++P V +SFTGST++G+ L C++
Sbjct: 190 ALAELAIRAGVPAGVFNVVT---GSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAK 246
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
IK++SLELGGNAPFIV+ +A+L KAV GA+A+KFRN GQ CV ANR +Q+ V+D+F E
Sbjct: 247 DIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAE 306
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
L + GD + +GPLI+ V KV+ + DA+ KGA+V+ GGK + G
Sbjct: 307 KL-QQAMSKLHIGDGLD-NGVTIGPLIDEKAVAKVEEHIADALEKGARVVC-GGKAHERG 363
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
FF PTIL ++ + EE FGP+A +FK E + + AN++ GLA YF+ D+S
Sbjct: 364 GNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLS 423
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFG 504
+ +RVG+ L+ G+VGIN GIIS+ A FGG+K SGLGREGS++G+E++ +IKYMC G
Sbjct: 424 RVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG 480
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 768 bits (1986), Expect = 0.0
Identities = 229/477 (48%), Positives = 315/477 (66%), Gaps = 8/477 (1%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
QAYI GEW S F V++PA E L VP MG + AI +A+ A+ W T K
Sbjct: 13 HQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAK 72
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
ER +L+RW + N LA I+T E GKP E+ GE+ YA SF++WF+EE +R G+
Sbjct: 73 ERAAILRRWFDLVIANSDDLALILTTEQGKPLAEAKGEIAYAASFIEWFAEEGKRVAGDT 132
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+P+P +K +++V+EP+GV ITPWNFP AMI RKV PALAAGC V+KPAE TP +AL
Sbjct: 133 LPTPDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPALAAGCPIVVKPAESTPFSAL 192
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
A+A LA A +PKGVL+VV + ++G + ++P V +SFTGST VG++L + +
Sbjct: 193 AMAFLAERAGVPKGVLSVVIG---DPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSAP 249
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
+K+L+LELGGNAPFIV+ +A+L AV GA+A+K+RN GQ CV NRF + E+V+D F +
Sbjct: 250 TVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFAD 309
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
L G ++ LGPLIN A V+KV+S + DA++KGA ++ GGK LG
Sbjct: 310 KL-AAAVSKLKVGRGTE-SGATLGPLINEAAVKKVESHIADALAKGASLMT-GGKRHALG 366
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
FF PT+LT + PDM EE FGP+A +F +EEE + +AN++ GLA Y ++ DI
Sbjct: 367 HGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRDIG 426
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFG 504
+ WRV + L+ GMVGIN G+IS+ A FGGVK+SGLGREGS +G++++ IKY+C
Sbjct: 427 RVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLCVA 483
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 767 bits (1983), Expect = 0.0
Identities = 152/483 (31%), Positives = 254/483 (52%), Gaps = 10/483 (2%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
+I G++V + S + +P+ + + ++P D + A+ A+ A + W++ T +
Sbjct: 13 KVNFIGGQYVPSNESDTIDILSPSTGKVIGEIPAGCKADAENALEVAQAAQKAWAKLTAR 72
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
R +L+ + ++ NK LA ++ E GK + + EV +F+D+ + A G++
Sbjct: 73 TRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDNALTIEGDI 132
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+PS + +++ + + P GVV IT WNFP+A+ RK+ PAL G T V+KP ++TPL
Sbjct: 133 LPSDNQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPALITGNTMVLKPTQETPLATT 192
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
L +A EA +P GVLNV+ + + VG+ LC SP I+ TGST GK +Y ++
Sbjct: 193 ELGRIAKEAGLPDGVLNVINGT---GSVVGQTLCESPITKMITMTGSTVAGKQIYKTSAE 249
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
+ + LELGG AP +V +A+L KA A+ +F NCGQ C R + V+D+F+
Sbjct: 250 YMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVYDEFMA 309
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT--- 384
+ + K GD +GP N +++ +D IV +AI +GA V GG T
Sbjct: 310 KF-LPLVKGLKVGDPMD-ADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEG 367
Query: 385 KLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTN 444
G ++ PT+L ++ D + EE FGP+ +K + E+++ N+S GL+ Y T
Sbjct: 368 FEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQAIEFCNDSIYGLSAYVHTQ 427
Query: 445 DISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFG 504
+ + L+VG V IN G+ + G K+SG G E + G+E++ + K +
Sbjct: 428 SFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFGGEDGKFGLEQYLEKKTVYIN 487
Query: 505 NLE 507
E
Sbjct: 488 EAE 490
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 764 bits (1976), Expect = 0.0
Identities = 228/477 (47%), Positives = 314/477 (65%), Gaps = 10/477 (2%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
+Q +NG W+ V NPA+ + VP + V ++ AI ++ +A W+ T K
Sbjct: 33 SQCLVNGRWIDAADGTTIKVTNPADGSVIGTVPSLSVATIKEAIDASAKALSGWAAKTAK 92
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
ER +L++W + N +A IMT E GKP E+ GEV+YA SF++WF+EEA+R YG+
Sbjct: 93 ERAGILRKWFDLIIANADDIALIMTSEQGKPLAEARGEVLYAASFIEWFAEEAKRVYGDT 152
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+P+P + L ++R+P+GV ITPWNFP AMITRK APALAAGCT +++PA+ TPLTAL
Sbjct: 153 IPAPQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPALAAGCTMIVRPADLTPLTAL 212
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
AL LA +A IP GVL +VT A +G L ++ V +SFTGST+VG++L + C+
Sbjct: 213 ALGVLAEKAGIPAGVLQIVTG---KAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCAP 269
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
IKR+SLELGGNAPFIV+ +A+L AV GAM +K+RN GQ CV ANR +Q V+D+F E
Sbjct: 270 TIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAE 329
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
L K G+ ++ +GP+I + KV + ++DA+SKGAK+I GG +LG
Sbjct: 330 KL-AAKVKELKVGNGTE-PGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGG---KELG 384
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
FF P ILT +T DML EE FGP+A F TEEE + AN++ GLA YF+T + S
Sbjct: 385 GLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTENFS 444
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFG 504
+A RV + L+ GMVG N G+IS+ A FGGVK+SGLGREGS++G+EE+ + KY+C
Sbjct: 445 RAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLETKYICSA 501
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 753 bits (1947), Expect = 0.0
Identities = 155/475 (32%), Positives = 258/475 (54%), Gaps = 7/475 (1%)
Query: 30 TQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
YI+G++V V NPA + ++ +PD ED + AI +A+ A +W
Sbjct: 7 HPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAI 66
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGEL 147
ER L++ + ++ ++ +E GK + EV + ++D+ +E ARR GE+
Sbjct: 67 ERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEI 126
Query: 148 VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTAL 207
+ S + +L+ + LGV I PWNFP +I RK+APAL G T VIKP+E TP A+
Sbjct: 127 IQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAI 186
Query: 208 ALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ 267
A A + E +P+GV N+V +VG+ L +P VA +S TGS G+ + + ++
Sbjct: 187 AFAKIVDEIGLPRGVFNLVLGR---GETVGQELAGNPKVAMVSMTGSVSAGEKIMATAAK 243
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVE 327
I ++ LELGG AP IV +A+L+ AV + ++ N GQ C A R +Q+ ++DQFV
Sbjct: 244 NITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVN 303
Query: 328 MLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLG 387
L + ++ G+ ++ + +GPLIN A +E+V+ V A+ +GA+V GGK +
Sbjct: 304 RLGEAM-QAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAF-GGKAVEGK 361
Query: 388 SKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDIS 447
++ PT+L ++ +M EE FGPV + F T E+++ +AN+S+ GL +T +++
Sbjct: 362 GYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQNLN 421
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
A + K L+ G IN + G ++SG+G +HG+ E+ Q + +
Sbjct: 422 VAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLHEYLQTQVVY 476
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 713 bits (1844), Expect = 0.0
Identities = 152/481 (31%), Positives = 239/481 (49%), Gaps = 18/481 (3%)
Query: 30 TQAYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKER 89
+ Y+NGEW S + +Y PA+ L VP M E+V Y SAK+A W + ER
Sbjct: 5 YKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIER 64
Query: 90 GIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVP 149
L + L +K+ + I+++E K ++ EVV +++ +EE R GE++
Sbjct: 65 AAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLE 124
Query: 150 -----SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
+ K K ++ REP+G+V I+P+N+P+ + K+APAL AG KP +
Sbjct: 125 GGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSI 184
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
+ L LA EA +P GV N +T + +G + V I+FTGST +G+ +
Sbjct: 185 SGLLLAEAFAEAGLPAGVFNTITGR---GSEIGDYIVEHQAVNFINFTGSTGIGERIGKM 241
Query: 265 CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
G++ + LELGG IV +A+L+ +A F GQ C A R L+ E V D+
Sbjct: 242 A--GMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADE 299
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT 384
VE + E + G+ D ++ PLI+ + V+ ++ DA KGA +
Sbjct: 300 LVEKI-REKVLALTIGN--PEDDADITPLIDTKSADYVEGLINDANDKGATALTEI---- 352
Query: 385 KLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTN 444
K P + +T DM EE FGPV I+ + EE++ ++N S GL FTN
Sbjct: 353 KREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTN 412
Query: 445 DISQAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKESGLGREGSRHGMEEFTQIKYMCF 503
D +A+ + ++L+VG V IN T+ F G K+SG G +G ++ +E T +K + F
Sbjct: 413 DFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVF 472
Query: 504 G 504
Sbjct: 473 D 473
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 709 bits (1833), Expect = 0.0
Identities = 148/484 (30%), Positives = 255/484 (52%), Gaps = 14/484 (2%)
Query: 27 STYTQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQT 84
T +++ING+W S + + NP + + + ++ A A++A ++W+++
Sbjct: 4 ETLNKSFINGKWTGGESGRTEDILNPYDQSVITTASLATGKQLEDAFDIAQKAQKEWAKS 63
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTY 144
T ++R VL++ L N+ + ++ +E+G +S E+ + +D
Sbjct: 64 TTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAILDEAMTYTGELG 123
Query: 145 G-ELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTP 203
G + VPS ++ K + R PLGV+ I+P+NFPM + R +APA+A G + V KP T
Sbjct: 124 GVKEVPSDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPAIALGNSVVHKPDIQTA 183
Query: 204 LTALALAA-LAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
++ + A A +P GVLNV+ T+ +G + T+P ISFTGST VG+ +
Sbjct: 184 ISGGTIIAKAFEHAGLPAGVLNVML---TDVKEIGDGMLTNPIPRLISFTGSTAVGRHIG 240
Query: 263 SHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+ KR++LELGGN PF V S+A++ +AV A+ KF + GQ C+ NR ++ + V+
Sbjct: 241 EIAGRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVY 300
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D+FVE K GD + K +GPLIN Q+EK I++ A + G ++ + G
Sbjct: 301 DEFVEKF-TARVKQLPYGDQTD-PKTVVGPLINERQIEKALEIIEQAKTDGIELAVEG-- 356
Query: 383 VTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFF 442
K P + + E+F P+A IK +++E++ +AN++ GL+ F
Sbjct: 357 --KRVGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVF 414
Query: 443 TNDISQAWRVGKKLQVGMVGINEGIISHT-EAAFGGVKESGLGREGSRHGMEEFTQIKYM 501
T+D+ + + ++ GM +N+ ++ + AFGG K SG+GR G+ +EEFT K++
Sbjct: 415 TSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGRFGNPWVVEEFTVTKWI 474
Query: 502 CFGN 505
Sbjct: 475 SIQK 478
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 709 bits (1832), Expect = 0.0
Identities = 153/497 (30%), Positives = 236/497 (47%), Gaps = 23/497 (4%)
Query: 16 MHMKYLQKLCLSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMS 73
M M + NGEWV S ++ + PA+ L +P + E+V AI
Sbjct: 1 MVMALQTEQ---FNANILRNGEWVESRTGERISISAPASGVALGSIPALSQEEVNDAIQG 57
Query: 74 AKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFV 133
AK+A + W ER +L W LE K+ + E++ E KP ++GEV +
Sbjct: 58 AKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADII 117
Query: 134 DWFSEEARRTYGELVPSP-----VKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPAL 188
++EA R GE + K L+ REPLGVV I+P+N+P+ + K+APAL
Sbjct: 118 RHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAPAL 177
Query: 189 AAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAG 248
G T V KPA L+ + + +A P+G++ VVT + +G L P +
Sbjct: 178 VTGNTVVFKPATQGSLSGIKMVEALADAGAPEGIIQVVTGR---GSVIGDHLVEHPGIDM 234
Query: 249 ISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQA 308
I+FTG T G+ + + + LELGG P IV +A+L+ S ++ F GQ
Sbjct: 235 ITFTGGTTTGERISEKA--KMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQR 292
Query: 309 CVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQD 368
C A R +Q+ V DQ V + E+ + G D ++ P+I+ + ++ D
Sbjct: 293 CTAIKRVFVQDSVADQLVANI-KELVEQLTVGS--PEDDADITPVIDEKSAAFIQGLIDD 349
Query: 369 AISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLC 428
A+ GA ++ G K +PT+L ++TP M EE FGPV I+ K E++
Sbjct: 350 ALENGATLLSGN----KRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAIS 405
Query: 429 VANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKESGLGREG 487
++N S+ GL FT D +A +GK L+VG V IN + F GVK+SGLG +G
Sbjct: 406 LSNQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGVQG 465
Query: 488 SRHGMEEFTQIKYMCFG 504
+ + T+ +
Sbjct: 466 IKPSLLSMTRERVTVLN 482
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 696 bits (1798), Expect = 0.0
Identities = 159/480 (33%), Positives = 260/480 (54%), Gaps = 21/480 (4%)
Query: 33 YINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIV 92
+I+G+W+ + + V NP + E + +P + E+ + AI +A++ E +R +
Sbjct: 3 FIDGKWI-NREDMDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKEVMKNLPITKRYNI 61
Query: 93 LKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPV 152
L K+++ K+ LA+I+ ++GKP ++ EV + + + E++PS
Sbjct: 62 LMNIAKQIKEKKEELAKILAIDAGKPIKQARVEVERSIGTFKLAAFYVKEHRDEVIPSD- 120
Query: 153 KSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAAL 212
+ + REP+G+VG ITP+NFP+ + K+APA+A G V P+ PL + LA +
Sbjct: 121 -DRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKI 179
Query: 213 AHEAQ----IPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG 268
A +P GV N++T + VG + + V ISFTGS++VG+++ G
Sbjct: 180 IENALKKYNVPLGVYNLLTGA---GEVVGDEIVVNEKVNMISFTGSSKVGELITKKA--G 234
Query: 269 IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEM 328
K+++LELGG P IV +A+L KAV+ + F GQ C++ L+ E + D+F+EM
Sbjct: 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEM 294
Query: 329 LKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGS 388
V K G+ ++K ++GPLI++ E V+ +V+ AI +G K++LGG K
Sbjct: 295 F-VNKAKVLNVGNPL-DEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGG----KRDK 348
Query: 389 KFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQ 448
F PTIL + D + E F PV I+ EEE + +AN++ GL FTNDI++
Sbjct: 349 ALFYPTIL-EVDRDNILCKTETFAPVIPIIRT-NEEEMIDIANSTEYGLHSAIFTNDINK 406
Query: 449 AWRVGKKLQVGMVGINE-GIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFGNLE 507
+ + + L+ G V IN+ + FGGVK+SGLGREG ++ MEE + IK + E
Sbjct: 407 SLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIISKAE 466
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 696 bits (1798), Expect = 0.0
Identities = 138/503 (27%), Positives = 235/503 (46%), Gaps = 21/503 (4%)
Query: 11 VTVKQMHMKYLQKLCLSTYTQAYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYA 70
+ + +K + Y +Y+ GEW S ++ V +P + +A V E+V+
Sbjct: 1 MRAGLLEGVIKEKGGVPVY-PSYLAGEWGGSGQEIEVKSPIDLATIAKVISPSREEVERT 59
Query: 71 IMSAKEAF-EQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYA 129
+ + ER VL++ +E N AE++ +GKP + ++GEV A
Sbjct: 60 LDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAA 119
Query: 130 NSFVDWFSEEARRTYGELVPSPV----KSKELLMVREPLGVVGLITPWNFPMAMITRKVA 185
+ + ++ G+ +P E L+ REPLGVV ITP+N+P+ K+
Sbjct: 120 VDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKIT 179
Query: 186 PALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPH 245
+ G V+KP+ PL A +A P + ++ + +
Sbjct: 180 YSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPG----KEAEKIVADDR 235
Query: 246 VAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNC 305
VA +SFTGST+VG+ + G+K+ +ELGG P IV +A+L A +
Sbjct: 236 VAAVSFTGSTEVGERVVKVG--GVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYA 293
Query: 306 GQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSI 365
GQ C A L + V+ + VE + + S GD + ++GPLI+ + V+++ +
Sbjct: 294 GQRCDAIKLVLAERPVYGKLVEEV-AKRLSSLRVGDPR-DPTVDVGPLISPSAVDEMMAA 351
Query: 366 VQDAISKGAKVILGGGKVTKLGSKFFAPTIL---TNITPDMLCYTEEVFGPVAVCIKFKT 422
++DA+ KG +V+ GG +LG + PT + + DM+ Y EVF PVA+ ++ K
Sbjct: 352 IEDAVEKGGRVLAGG---RRLGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKD 408
Query: 423 EEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKES 481
++++ +AN GL F D+ + R + L+VG + IN+ FGG K+S
Sbjct: 409 LDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKS 468
Query: 482 GLGREGSRHGMEEFTQIKYMCFG 504
G+ REG + +E T K + F
Sbjct: 469 GVFREGIGYAVEAVTAYKTIVFN 491
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 674 bits (1742), Expect = 0.0
Identities = 159/480 (33%), Positives = 256/480 (53%), Gaps = 15/480 (3%)
Query: 29 YTQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTP 86
T+ I G+WV +S + NP +D +A+ + DV A +AK+A +W+ T
Sbjct: 12 ATKHLIGGQWVEGNSDRISTNINPYDDSVIAESKQASIADVDAAYEAAKKAQAEWAATPA 71
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGE 146
ER ++ R + LE +++ + E + +ESG +++ E+ A + + R +G
Sbjct: 72 AERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVHGR 131
Query: 147 LVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA 206
+ PS KE + R GVVG+I+PWNFP+ + R VAPALA G VIKPA DTP+T
Sbjct: 132 ISPSNTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPALAVGNAVVIKPASDTPVTG 191
Query: 207 LALAA-LAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHC 265
+ A + EA +P GV++ V + + +G T ISFTGST VG+ +
Sbjct: 192 GVIPARIFEEAGVPAGVISTVAGA---GSEIGDHFVTHAVPKLISFTGSTPVGRRVGELA 248
Query: 266 SQG--IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFD 323
G +K ++LELGGNAPF+V ++A++ A A F + GQ C++ NR ++ V D
Sbjct: 249 INGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHD 308
Query: 324 QFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKV 383
+F+E VE K+ GD S + +GP+IN +Q+ + ++ A +GA V + G
Sbjct: 309 EFLEKF-VEAVKNIPTGDPS-AEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEG--- 363
Query: 384 TKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT 443
+ + P + +++T DM EE+FGP+ +K E + +AN S+ GL+ ++
Sbjct: 364 -PIEGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWS 422
Query: 444 NDISQAWRVGKKLQVGMVGINEGIIS-HTEAAFGGVKESGLGREGSRHGMEEFTQIKYMC 502
DI +A + ++ GMV IN+ ++ FGG K SGLGR +EEFT +++
Sbjct: 423 KDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGRFNGDWAIEEFTTDRWIG 482
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 641 bits (1656), Expect = 0.0
Identities = 128/471 (27%), Positives = 217/471 (46%), Gaps = 12/471 (2%)
Query: 30 TQAYINGEWVHSS-KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKE 88
+ YI G+W+ + +P + V A+ +A+EAF W++ ++
Sbjct: 6 STHYIAGQWLAGQGETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFPAWARRPLEQ 65
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV 148
R +L+R+ L+ LA ++ +E+GKP ES EV + V + R GE
Sbjct: 66 RIELLERFAATLKSRADELARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGE-K 124
Query: 149 PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
P+ ++ +P GVV + P+NFP + + PAL AG V KP+E TP A
Sbjct: 125 SGPLADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAEL 184
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS-Q 267
+A +P GVLN+V R G L + G+ FTGS++ G +L+S Q
Sbjct: 185 TLKAWIQAGLPAGVLNLVQGGRE----TGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQ 240
Query: 268 GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF-DQFV 326
K L+LE+GGN P +V A+L AV + + F + GQ C A R L+ + + D +
Sbjct: 241 PQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALL 300
Query: 327 EMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKL 386
L V ++ + G + +G +I+L+ E + + I KGA+ +L +
Sbjct: 301 ARL-VAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPI-D 358
Query: 387 GSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDI 446
G+ P IL +++ EE FGP+ I++ ++ AN + GLA ++
Sbjct: 359 GAALLTPGIL-DVSAVAERPDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSR 417
Query: 447 SQAWRVGKKLQVGMVGINEGIISHTEAA-FGGVKESGLGREGSRHGMEEFT 496
+ + + + G+V N+ + +A FGG+ SG R + + +
Sbjct: 418 ERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGNHRPSAYYAADYCA 468
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 638 bits (1647), Expect = 0.0
Identities = 140/501 (27%), Positives = 219/501 (43%), Gaps = 16/501 (3%)
Query: 10 SVTVKQMHMKYLQKLCLSTYTQAYINGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQY 69
++ + Q +L++L L + NG W + Y PAN+E +A V V D +
Sbjct: 4 TLLINQPQYAWLKELGLREENEGVYNGSWGGRGEVITTYCPANNEPIARVRQASVADYEE 63
Query: 70 AIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYA 129
+ A+EA++ W+ +RG ++++ L Q L +++ E GK E +GEV
Sbjct: 64 TVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEGVGEVQEY 123
Query: 130 NSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALA 189
D+ +R G ++PS L+ P+G+VG+IT +NFP+A+ A A+
Sbjct: 124 VDICDYAVGLSRMIGGPILPSERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAMI 183
Query: 190 AGCTCVIKPAEDTPLTALALAALAHEAQ----IPKGVLNVVTSSRTNANSVGKLLCTSPH 245
G C+ K A T L ++A+ + + +P + ++ +G +
Sbjct: 184 CGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGAD----IGTAMAKDER 239
Query: 246 VAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNC 305
V +SFTGSTQVGK + + R LELGGN I + +A+L V A+ A
Sbjct: 240 VNLLSFTGSTQVGKQVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTA 299
Query: 306 GQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSI 365
GQ C A R I E + D+ V L + G+ GPL V
Sbjct: 300 GQRCTTARRLFIHESIHDEVVNRL-KKAYAQIRVGNPWD-PNVLYGPLHTKQAVSMFLGA 357
Query: 366 VQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEE 425
V++A +G V + GGKV + PTI+T + D E F P+ KF+ EEE
Sbjct: 358 VEEAKKEGGTV-VYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEE 416
Query: 426 SLCVANNSNTGLAGYFFTNDISQA--WRVGKKLQVGMVGINEGIISHTE--AAFGGVKES 481
N GL+ FT D+ + W K G+V +N E AFGG K +
Sbjct: 417 VFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSG-AEIGGAFGGEKHT 475
Query: 482 GLGREGSRHGMEEFTQIKYMC 502
G GRE +++ +
Sbjct: 476 GGGRESGSDAWKQYMRRSTCT 496
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 614 bits (1587), Expect = 0.0
Identities = 145/466 (31%), Positives = 255/466 (54%), Gaps = 8/466 (1%)
Query: 41 SSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKEL 100
++ + NPA + LA +P +++++A+ A F++W T+ +R L+ + L
Sbjct: 5 TATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQAL 64
Query: 101 EGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMV 160
+ + +A+ +T+E GKP ++ EV + + DW++E P+ V++++ ++
Sbjct: 65 RAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAEHGPAMLNP-EPTLVENQQAVIE 123
Query: 161 REPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPK 220
PLGV+ I PWNFP+ + R P L AG + ++K A + A +A + EA P
Sbjct: 124 YRPLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPA 183
Query: 221 GVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNA 280
GV V ++ V ++ P +A ++ TGS + G + + +K+ LELGG+
Sbjct: 184 GVYGWVNAN---NEGVSQM-INDPRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSD 239
Query: 281 PFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQG 340
PFIV ++A+L+ AV A+A +++N GQ C AA RF+++E + F + V + G
Sbjct: 240 PFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDRF-VAAAAALKMG 298
Query: 341 DTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNIT 400
D ++ +LGP+ +++ VQ ++++GA+++LGG K+ G+ ++A T+L ++T
Sbjct: 299 DPL-VEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGN-YYAATVLADVT 356
Query: 401 PDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGM 460
PDM + +E+FGPVA K +L +AN+S GL+ FT D + A + +L+ G
Sbjct: 357 PDMTAFRQELFGPVAAITVAKDAAHALALANDSEFGLSATIFTADDTLAAEMAARLECGG 416
Query: 461 VGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKYMCFGNL 506
V IN S AFGGVK+SG GRE S G+ EF ++ + +
Sbjct: 417 VFINGYSASDARVAFGGVKKSGFGRELSHFGLHEFCNVQTVWKNRV 462
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 607 bits (1568), Expect = 0.0
Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 8/457 (1%)
Query: 44 KFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGN 103
K+ NP +E A + + + AI A +++W P R +L L+ +
Sbjct: 5 KYQSVNPYTNEAFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEH 64
Query: 104 KQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREP 163
+ LA++MT E GK +ES EV S +++++ +++
Sbjct: 65 EDELAKMMTLEMGKLLSESKEEVELCVSICNYYADHGPEMLKP-TKLNSDLGNAYYLKQS 123
Query: 164 LGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL 223
GV+ PWNFP+ + R AP G ++K A + P +A A + A P+G L
Sbjct: 124 TGVIMACEPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSL 183
Query: 224 NVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFI 283
+ S + + + P + G++ TGS + G + + +K+ ++ELGGN FI
Sbjct: 184 INLYPS---YDQLADI-IADPRIQGVALTGSERGGSAVAEAAGKNLKKSTMELGGNDAFI 239
Query: 284 VYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTS 343
V +A+ Q + A+ N GQ C ++ R ++++ +D+ + L + + GD
Sbjct: 240 VLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHEL-KNVFSNLKAGDPL 298
Query: 344 KNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDM 403
L P+ + EK+++ V++AI GAKV ++ G+ FF PTILT+I D
Sbjct: 299 -EADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGA-FFRPTILTDIAKDN 356
Query: 404 LCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGI 463
+ +EVFGP+A + + ++ +AN+S+ GL +DI +A +V +++ GM I
Sbjct: 357 PVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVI 416
Query: 464 NEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIKY 500
N I+ E FGG+K+SG GRE S G+ F
Sbjct: 417 NGRWITSGELPFGGIKKSGYGRELSGLGLMAFVNEHL 453
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 512 bits (1320), Expect = e-179
Identities = 162/479 (33%), Positives = 276/479 (57%), Gaps = 10/479 (2%)
Query: 26 LSTYTQAYINGEWVHSS--KKFPVYNPAND-EHLADVPDMGVEDVQYAIMSAKEAFEQ-- 80
+ + Q ++G+ V ++ +P + E + P+ +DV+ A+ +A++AF+
Sbjct: 19 IKSRYQMLVDGKSVDAASGSTIDRVSPGHAGEVVGTWPEASADDVRKAVAAARKAFDAGP 78
Query: 81 WSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA 140
W + + ER ++ + + ++ LA I + E GKP ++ GE+ + + + +A
Sbjct: 79 WPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQA 138
Query: 141 RRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
R G+ + + L++REP+GVVG+ITPWNFP + + +V A+ +GCT V+KP+E
Sbjct: 139 RALEGQTHNNIGDDRLGLVLREPVGVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPSE 198
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI 260
T T++ LA LA EA IP GV NVVT + G++L P+V ++FTGS +VG
Sbjct: 199 FTSGTSIRLAELAREAGIPDGVFNVVTGY---GDPAGQVLAEDPNVDMVAFTGSVRVGTK 255
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
L ++ +KR+ LELGG P IV+++A+L A G + N GQ C++ +R L+QE
Sbjct: 256 LGEIAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEG 315
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
+ D +E L ++I++ GD N++ +G +I+ A EKV S V I+ GA+++LGG
Sbjct: 316 IRDALMERL-LDISRKVAFGD-PLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGG 373
Query: 381 GKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
++ + ++APT+ +TPDM EE+FGPV + FKT +E++ +AN + GL+
Sbjct: 374 ERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADEAVALANATEFGLSAS 433
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
++ ++ A + ++++ G IN I E GG K+SGLGRE R+G +E++Q K
Sbjct: 434 VWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGRELGRYGFDEYSQFK 492
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 509 bits (1313), Expect = e-178
Identities = 157/480 (32%), Positives = 253/480 (52%), Gaps = 14/480 (2%)
Query: 26 LSTYTQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--W 81
+ Y + +I G+W +S V PA E++ VP DV A+ +A+ AF+ W
Sbjct: 5 ATEYDKLFIGGKWTKPSTSDVIEVRCPATGEYVGKVPMAAAADVDAAVAAARAAFDNGPW 64
Query: 82 SQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEA 140
T P ER V+ +K L K +++ E+G+PPT + + +++F+ A
Sbjct: 65 PSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAA 124
Query: 141 RRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAE 200
+ + + ++ REP+GVVG I WN P+ + K+APAL AGCT V+KPA
Sbjct: 125 DKVTWTETRTGSYGQSIV-SREPVGVVGAIVAWNVPLFLAVNKIAPALLAGCTIVLKPAA 183
Query: 201 DTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKI 260
+TPLTA ALA + E +P+GVL+VV G+ L ++P + +FTGS+ VG+
Sbjct: 184 ETPLTANALAEVFAEVGLPEGVLSVVPGGIE----TGQALTSNPDIDMFTFTGSSAVGRE 239
Query: 261 LYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQ 320
+ ++ +K +LELGG + I+ + +L A+ + + N GQ CV R L
Sbjct: 240 VGRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRS 299
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
+D+ V + + G S + +GPLI+ Q +V+ + I +GA+++ GG
Sbjct: 300 RYDEIVAAV-TNFVTALPVGPPS-DPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGG 357
Query: 381 GKVTKLGSKFF-APTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAG 439
G+ L + FF PT+ ++ M EE+FGPV I + TEE+++ +AN+S GLAG
Sbjct: 358 GRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAG 417
Query: 440 YFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+T D+ + ++ ++++ G GIN + FGG K SG+GRE G+E FTQ K
Sbjct: 418 SVWTTDVPKGIKISQQIRTGTYGINWYAFDPG-SPFGGYKNSGIGRENGPEGVEHFTQQK 476
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 507 bits (1308), Expect = e-178
Identities = 159/477 (33%), Positives = 242/477 (50%), Gaps = 16/477 (3%)
Query: 28 TYTQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTT 85
YT+ YINGEWV +S++ V NPA +E + V DV A+ +A + + ++ T+
Sbjct: 6 DYTKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYLEFRHTS 65
Query: 86 PKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTY 144
KER +L + +KE E K + + +T E G P + S + +
Sbjct: 66 VKERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYE 125
Query: 145 GELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
E L+V+E +GV GLITPWNFP + K+A A AAG V+KP+E+TP
Sbjct: 126 FEERRGDD-----LVVKEAIGVSGLITPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPF 180
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
A+ LA + + +PKGV N+V VG L P V +SFTGS G +
Sbjct: 181 AAVILAEIFDKVGVPKGVFNLVNGD---GAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEK 237
Query: 265 CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
++ K++SLELGG +P+IV + ++++A N GQ C A R L+ ++ D
Sbjct: 238 AAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDA 297
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT 384
F+ LK E G+ D +GP+I+ Q ++V + + I +GA++ GG
Sbjct: 298 FLAELK-EQFSQVRVGNPR-EDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKP 355
Query: 385 KLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFF 442
+ K F PTI N+ M EE+FGPV I + +E++ +AN++ GLAGY
Sbjct: 356 EGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDEAIQIANDTKYGLAGYVI 415
Query: 443 TNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
D +V + ++ G V IN + FGG K+SGLGRE +G+EEF ++K
Sbjct: 416 GKDKETLHKVARSIEAGTVEIN-EAGRKPDLPFGGYKQSGLGREWGDYGIEEFLEVK 471
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 506 bits (1306), Expect = e-177
Identities = 169/484 (34%), Positives = 278/484 (57%), Gaps = 12/484 (2%)
Query: 23 KLCLSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ 80
+L + YI+GEWV S+ + NP N E + V + ED + AI++A+ AFE
Sbjct: 26 ELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFES 85
Query: 81 --WSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSE 138
WSQ T + RG ++ +++ +++ALA + T ++GK ES ++ ++ +F+
Sbjct: 86 GEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFAG 145
Query: 139 EARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKP 198
A + GE++ SP+ E +V+EP+GVV ITPWN+P+ + K+APALA GC+ V+KP
Sbjct: 146 LADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMKP 205
Query: 199 AEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVG 258
+E TPLT + + L E PKG +N++ + + VG ++ V +SFTG + G
Sbjct: 206 SEITPLTTIRVFELMEEVGFPKGTINLILGA---GSEVGDVMSGHKEVDLVSFTGGIETG 262
Query: 259 KILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQ 318
K + + + + ++LELGG P I++ +A+ + AV A+ + + GQ C A +R L+Q
Sbjct: 263 KHIMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQ 322
Query: 319 EQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
+ D+F + L ++ K G+ + +GP+I+ K++S + A ++GA + +
Sbjct: 323 NSIKDKFEQAL-IDRVKKIKLGN-GFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAV 380
Query: 379 GGGKVTKLGSK---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNT 435
GG + + K FF PT++TN M EEVFGPV F+TE+E++ +AN+S
Sbjct: 381 GGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIY 440
Query: 436 GLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEF 495
GLAG F+ DI +A RV KL++G V IN+ +A +GG K+SG+GRE + G+EE+
Sbjct: 441 GLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEY 500
Query: 496 TQIK 499
K
Sbjct: 501 LVSK 504
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 502 bits (1296), Expect = e-175
Identities = 169/482 (35%), Positives = 264/482 (54%), Gaps = 16/482 (3%)
Query: 29 YTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ-----W 81
Q +ING+W K+ PV NPA + D+P EDV A+ +AK A + W
Sbjct: 7 TRQLFINGDWKAPVLNKRIPVINPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGADW 66
Query: 82 SQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEAR 141
+ + R L+ ++ K LA++ + + GKP E+ ++ +++++ A
Sbjct: 67 ATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYADLAE 126
Query: 142 RTYGEL---VPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKP 198
+ V P+ + + ++REP+GVVGLITPWN+PM M T KVAPALAAGC ++KP
Sbjct: 127 KLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMATWKVAPALAAGCAAILKP 186
Query: 199 AEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVG 258
+E LT L L + E +P GVLN++T G L T P V ++FTGS+ G
Sbjct: 187 SELASLTCLELGEICKEVGLPPGVLNILTGL---GPEAGAPLATHPDVDKVAFTGSSATG 243
Query: 259 KILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQ 318
+ + +Q +K +SLELGG +P +V+ + +L KA A+ F GQ C A +R ++
Sbjct: 244 SKIMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILH 303
Query: 319 EQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
E + +F+ + V+ K+ D + C LGP+++ Q EK+ V +A S+GA ++
Sbjct: 304 ESIATEFLNRI-VKWIKNIKISD-PLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILT 361
Query: 379 GGGKVTKLGSKFF-APTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGL 437
GG + L FF PTI+T++T +M + EEVFGPV F TEEE++ +AN++ GL
Sbjct: 362 GGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGL 421
Query: 438 AGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQ 497
+ND+ + RV K + G+V +N T+A +GGVK SG GRE G++ +
Sbjct: 422 GAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLS 481
Query: 498 IK 499
+K
Sbjct: 482 VK 483
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 501 bits (1293), Expect = e-175
Identities = 153/479 (31%), Positives = 257/479 (53%), Gaps = 13/479 (2%)
Query: 26 LSTYTQAYINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQ 83
+ + YING W + V +P+ +E A + D AI +AK+AF+ W
Sbjct: 22 MLNKRKFYINGLWDDPSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKT 81
Query: 84 TTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEARR 142
T+P ER +++ L+ E +A+ ++ E G P +L + +S + F + +
Sbjct: 82 TSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYKE 141
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
+ + +L + +GVVGLITPWN+PM +T KV PAL AGCT V+KP+E
Sbjct: 142 FSFQEALIEGNEQAIL-HYDAIGVVGLITPWNWPMNQVTLKVIPALLAGCTMVLKPSEIA 200
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
PL+A+ A + EA +P GV N++ +VG L P + ISFTGST+ GK +
Sbjct: 201 PLSAMLFAEILDEAALPSGVFNLINGD---GANVGSYLSAHPDLEMISFTGSTRAGKDIS 257
Query: 263 SHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+ S +KR+ LELGG I++++A++ A+ + F N GQ+C A R L+++ ++
Sbjct: 258 KNASNTLKRVCLELGGKGANIIFADADI-DALQRGVRHCFYNSGQSCNAPTRMLVEQAIY 316
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D+ ++ K +I + G ++GP+++ Q +K+ ++Q I +GA ++ GG
Sbjct: 317 DKAIKTAK-DIAEKTQVGPGH-QTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTG 374
Query: 383 VTKLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
+ + + PT+ ++ P M + EE+FGPV + F TE+E++ +AN++ GL Y
Sbjct: 375 LPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNY 434
Query: 441 FFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+ D S+ R+ +++ GMV +N + + FGGVK SG REG G++EF K
Sbjct: 435 IQSQDRSKCRRIAAQVRSGMVEVNGHEL-PGGSYFGGVKFSGRAREGGLWGIKEFLDTK 492
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 500 bits (1289), Expect = e-174
Identities = 175/474 (36%), Positives = 253/474 (53%), Gaps = 10/474 (2%)
Query: 29 YTQAYINGEWVHSS-KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPK 87
+ INGE V +K PVYNPA + L ++ + E V A+ +A AF +W QTTPK
Sbjct: 23 QHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPK 82
Query: 88 ERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYGE 146
R L + +E N Q AE+ ++ GKP + E+ +F+ AR G
Sbjct: 83 VRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 142
Query: 147 LVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTA 206
++ ++ R+PLGVV I PWN+P+ M K+APALAAG V+KP+E TPLTA
Sbjct: 143 AAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTA 202
Query: 207 LALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCS 266
L LA LA + P GV+N++ +VG L P V +S TGS G+ + SH +
Sbjct: 203 LKLAELAKDI-FPAGVVNILFGRG---KTVGDPLTGHPKVRMVSLTGSIATGEHIISHTA 258
Query: 267 QGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFV 326
IKR +ELGG AP IV+ +A+++ V G + N GQ C AA R Q+ ++D V
Sbjct: 259 SSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLV 318
Query: 327 EMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKG-AKVILGGGKVTK 385
E L + G ++ LGPL +LA +E+V V++A + G KVI GG K
Sbjct: 319 EKL-GAAVATLKSGAPD-DESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKG 376
Query: 386 LGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
G ++APT+L D +EVFGPV F EE+ + AN+S GLA +T D
Sbjct: 377 NGY-YYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKD 435
Query: 446 ISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+ +A RV +LQ G +N + +E GG K SG G++ S +G+E++T ++
Sbjct: 436 VGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVR 489
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 500 bits (1289), Expect = e-174
Identities = 170/482 (35%), Positives = 252/482 (52%), Gaps = 15/482 (3%)
Query: 26 LSTYTQAYINGEWVHSS--KKF-PVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWS 82
+ T Y G + S PV+ PA L + G E+V A+ SA+ A+ +WS
Sbjct: 16 VVTDDLNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWS 75
Query: 83 QTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARR 142
+ ER V+ + + + +A++ +GK TE+ ++ A +++++ A
Sbjct: 76 KMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPT 135
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
G+ + P REPLGV I WN+P + K APALA G V KP+ T
Sbjct: 136 LSGQHIQLP-GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNAVVFKPSPMT 194
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
P+T + LA + HEA +P G++NVV G LLC P+VA +SFTGS GK +
Sbjct: 195 PVTGVILAEIFHEAGVPVGLVNVVQGGAE----TGSLLCHHPNVAKVSFTGSVPTGKKVM 250
Query: 263 SHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
++ +K ++LELGG +P +++ + L+ AV GA+ A F GQ C R +Q ++
Sbjct: 251 EMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM 310
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
QF+E + V+ TK+ + GD + +G LI+ Q++KV V A +GA+V+ GG
Sbjct: 311 PQFLEEV-VKRTKAIVVGDPL-LTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEP 368
Query: 383 VTKLGSK-----FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGL 437
+T K F +P +L N DM C EE+FGPV + F TEEE L ANN+ GL
Sbjct: 369 LTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGL 428
Query: 438 AGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQ 497
A FT DIS+A RV L+ G IN IS E FGG K SG GRE + ++ ++Q
Sbjct: 429 ASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGRENGQATVDYYSQ 488
Query: 498 IK 499
+K
Sbjct: 489 LK 490
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 499 bits (1288), Expect = e-174
Identities = 149/477 (31%), Positives = 237/477 (49%), Gaps = 12/477 (2%)
Query: 27 STYTQAYINGEWVHSS-KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTT 85
TQ I + + + + NP + D+ + + A+ +A+ AF WSQTT
Sbjct: 23 MMDTQLLIGSRFEAGTEAEEHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFVGWSQTT 82
Query: 86 PKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTY 144
P ER L + +E A + GKP E+ +F+ R +
Sbjct: 83 PAERSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAGAVRNLH 142
Query: 145 GELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
+ ++ R+P+G+VG I PWN+P+ M+ K+APA+ G T V KP+E TPL
Sbjct: 143 APAAGEYLPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPAIGGGNTVVFKPSEQTPL 202
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
TAL LA L + +P+GV+NV+T +VG L P V +S TG GK + +
Sbjct: 203 TALKLARLIADI-LPEGVVNVITGRG---ETVGNALINHPKVGMVSITGDIATGKKVLAA 258
Query: 265 CSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
++ +KR LELGG AP IVY +A+L+ V+G + N GQ C AA R + ++++
Sbjct: 259 AAKTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEK 318
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT 384
V L + + + +GPLI+ Q ++V S V+ A + I GG+
Sbjct: 319 LVADL-TSAVSTIRYNLDD-DTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGR-- 374
Query: 385 KLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFF 442
+ FF PT++ T + EVFGPV +F +++++ AN+S+ GLA +
Sbjct: 375 TGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSDYGLASSVW 434
Query: 443 TNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
T DIS+A R +LQ G IN + E GG+K+SG G++ S + +E++T ++
Sbjct: 435 TKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYGKDMSVYALEDYTAVR 491
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 498 bits (1286), Expect = e-174
Identities = 163/478 (34%), Positives = 252/478 (52%), Gaps = 13/478 (2%)
Query: 29 YTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTP 86
+ YI G +V +S F NPAN E LA V EDV+ A+ SA E + W+ T
Sbjct: 6 EQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTA 65
Query: 87 KERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLG-EVVYANSFVDWFSEEARRTYG 145
+R +L+R + L LA + T ++GKP E+ ++V +++++ G
Sbjct: 66 MQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEG 125
Query: 146 ELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLT 205
E +P ++ + REPLGVV I WN+P+ + K APALAAG + KP+E TPLT
Sbjct: 126 EQIPLR-ETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLT 184
Query: 206 ALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHC 265
AL LA + EA +P GV NV+T S VG+ L P + ISFTG T GK + +
Sbjct: 185 ALKLAEIYTEAGVPDGVFNVLTGS---GREVGQWLTEHPLIEKISFTGGTSTGKKVMASA 241
Query: 266 SQG-IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
S +K +++ELGG +P I++ +A+L +A A+ A F + GQ C R I +
Sbjct: 242 SSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQAR 301
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVT 384
F + +E + GD ++ N GPL++ +E V ++ ++ A+++ GG +VT
Sbjct: 302 FEAKV-LERVQRIRLGDPQ-DENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVT 359
Query: 385 KLGSK---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYF 441
+ APT+ T+ DM EE+FGPV + + E+E++ AN++ GLA
Sbjct: 360 DGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGV 419
Query: 442 FTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
T D+++A R +L+ G+ IN S E GG K+SG+GRE + +T+IK
Sbjct: 420 VTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIK 477
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 497 bits (1282), Expect = e-173
Identities = 170/496 (34%), Positives = 257/496 (51%), Gaps = 26/496 (5%)
Query: 16 MHMKYLQKLCLSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMS 73
M M L +I+G++V + F PA E +A + V+ AI S
Sbjct: 1 MVMTIATPLKAQPKASHFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATPAIVERAIAS 60
Query: 74 AKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSF 132
AK A ++W+ +P RG +LKR + AL+ + T ++GKP E++ +
Sbjct: 61 AKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQETIVADPTSG--- 117
Query: 133 VDWFSEEARRTYGELVPS-------PVKSKELLMVREPLGVVGLITPWNFPMAMITRKVA 185
D F +G + PS P+ R PLGV I WN+P + K A
Sbjct: 118 ADAF-----EFFGGIAPSALNGDYIPLGGDFAYTKRVPLGVCVGIGAWNYPQQIACWKAA 172
Query: 186 PALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPH 245
PAL AG V KP+E+TPL AL +A + EA +PKG+ NV+ R G LL P
Sbjct: 173 PALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDR----DTGPLLVNHPD 228
Query: 246 VAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNC 305
VA +S TGS G+ + + + +K +++ELGG +P IV+ +A+++ AV GAM F +
Sbjct: 229 VAKVSLTGSVPTGRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSS 288
Query: 306 GQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSI 365
GQ C R +Q++ +F+E L T++ I GD + +LGPL++ AQ EKV S
Sbjct: 289 GQVCSNGTRVFVQKKAKARFLENL-KRRTEAMILGDPL-DYATHLGPLVSKAQQEKVLSY 346
Query: 366 VQDAISKGAKVILGGGKVTKLGSK--FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE 423
++ ++GA +I GGG + + + PT+ ++T DM EE+FGPV + F E
Sbjct: 347 IEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDE 406
Query: 424 EESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGL 483
+E L AN + GLAG FT D+++A RV L+ G + IN + E FGG K+SG
Sbjct: 407 DEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGF 466
Query: 484 GREGSRHGMEEFTQIK 499
GRE S +E ++++K
Sbjct: 467 GRENSAAALEHYSELK 482
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 494 bits (1275), Expect = e-172
Identities = 174/478 (36%), Positives = 265/478 (55%), Gaps = 14/478 (2%)
Query: 29 YTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ---WSQ 83
YT+ +IN EW S KKFPV+NPA +E L +V + EDV A+ +A++AF+ W
Sbjct: 20 YTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRT 79
Query: 84 TTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEARR 142
ERG +L + +E ++ LA + GK + + ++ + + + A +
Sbjct: 80 MDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADK 139
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
G +P + EP+GV G I PWNFP+ M K+ PAL+ G T V+KPAE T
Sbjct: 140 IQGRTIPMD-GNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQT 198
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
PLTAL + +L EA P GV+N+V + G + + V ++FTGST+VGK++
Sbjct: 199 PLTALHMGSLIKEAGFPPGVVNIVPGY---GPTAGAAISSHMDVDKVAFTGSTEVGKLIK 255
Query: 263 SHCSQG-IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQV 321
+ +KR+SLELGG +P IV+++A+L AV A F + GQ C+AA+R ++E +
Sbjct: 256 EAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESI 315
Query: 322 FDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGG 381
+D+FV VE K ++ G+ + GP I+ Q EK+ +++ +GAK+ GGG
Sbjct: 316 YDEFVRRS-VERAKKYVLGN-PLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGG 373
Query: 382 KVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYF 441
G F PT+ +++T DM EE+FGPV +KFK+ ++ + ANN+ GL+
Sbjct: 374 PWGNKGY-FIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGI 432
Query: 442 FTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
FTNDI +A V LQ G V +N + + FGG K SG GRE +G E+T++K
Sbjct: 433 FTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVK 490
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 492 bits (1270), Expect = e-171
Identities = 164/487 (33%), Positives = 257/487 (52%), Gaps = 17/487 (3%)
Query: 26 LSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQ 83
+I GE+V S + FP +PA +E L G +V A +A EAF++WS+
Sbjct: 23 KERPALHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQRWSR 82
Query: 84 TTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEA-RR 142
T KER L R + +E + LA + ++G+ +V A +++E A
Sbjct: 83 TKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRIVRAQVARAAENFAFYAEYAEHA 142
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
P + VR P G VG+ITPWN P+ + T ++APALA G T V+KPAE +
Sbjct: 143 MEDRTFPVD-RDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPALAFGNTVVLKPAEWS 201
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
P TA LA + EA +P GV N+V G L P V ++ TG T+ GKI+
Sbjct: 202 PFTATKLAEILKEADLPPGVFNLVQGF---GEEAGAALVAHPLVPLLTLTGETETGKIVM 258
Query: 263 SHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+ + +KRLS ELGG +P +V+++A+L++A+ + F G+ C A++R L++E++F
Sbjct: 259 RNAADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF 318
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
+ FV + VE ++ G + + +GPLI+ +++V V+ +GA++++GG +
Sbjct: 319 EDFVGKV-VERARAIRVGH-PLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGER 376
Query: 383 VTKLGSK-------FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNT 435
+ PT+ M EE+FGPV V I FK EEE+L AN++
Sbjct: 377 AKTSFRGEDLSRGNYLLPTVFVG-ENHMKIAQEEIFGPVLVAIPFKDEEEALRKANDTKY 435
Query: 436 GLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEF 495
GLA Y FT D+ +A R+ +L+ GMV +N + H FGGVK SG REG + ++ +
Sbjct: 436 GLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRREGGTYALDFY 495
Query: 496 TQIKYMC 502
T +K +
Sbjct: 496 TDLKTIA 502
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 491 bits (1267), Expect = e-171
Identities = 167/478 (34%), Positives = 255/478 (53%), Gaps = 14/478 (2%)
Query: 29 YTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ---WSQ 83
Q +IN EW + K FP NP+ E + V + EDV A+ +A+ AF+ W +
Sbjct: 19 CNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRR 78
Query: 84 TTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEARR 142
RG +L R +E ++ LA + T ++GKP S ++ + +++ A +
Sbjct: 79 MDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADK 138
Query: 143 TYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDT 202
+G+ +P EP+GV G I PWNFP+ M K+ PALA G V+K AE T
Sbjct: 139 YHGKTIPID-GDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQT 197
Query: 203 PLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILY 262
PLTAL +A L EA P GV+N+V + G + + V ++FTGST++G+++
Sbjct: 198 PLTALYVANLIKEAGFPPGVVNIVPGF---GPTAGAAIASHEDVDKVAFTGSTEIGRVIQ 254
Query: 263 SHCSQG-IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQV 321
+KR++LELGG +P I+ S+A++ AV A A F N GQ A +R +QE +
Sbjct: 255 VAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDI 314
Query: 322 FDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGG 381
+D+FVE V KS + G+ + K GP ++ Q +K+ + +GAK++ GGG
Sbjct: 315 YDEFVERS-VARAKSRVVGN-PFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGG 372
Query: 382 KVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYF 441
G F PT+ ++ M EE+FGPV +KFKT EE + ANNS GLA
Sbjct: 373 IAADRGY-FIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAV 431
Query: 442 FTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
FT D+ +A + + LQ G V +N + ++ FGG K SG GRE +G++ +T++K
Sbjct: 432 FTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVK 489
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 486 bits (1254), Expect = e-169
Identities = 172/485 (35%), Positives = 263/485 (54%), Gaps = 17/485 (3%)
Query: 26 LSTYTQAYINGEWVHSS--KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQ--W 81
L Q +I GE+V + K + NP + + V V DV A+ +AKEAFE W
Sbjct: 33 LQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLW 92
Query: 82 SQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESL-GEVVYANSFVDWFSEEA 140
+ ++RG +L R +E +++ LA I ++G T +L V + +F+
Sbjct: 93 GKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWC 152
Query: 141 RRTYGELVP-SPVKSKELLM--VREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIK 197
+ G +P + + L +EP+GV G++ PWN+P+ M++ K A LAAG T VIK
Sbjct: 153 DKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIK 212
Query: 198 PAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQV 257
PA+ TPLTAL A L +A IPKGV+N++ S + VG+ L P V I FTGST+V
Sbjct: 213 PAQVTPLTALKFAELTLKAGIPKGVVNILPGS---GSLVGQRLSDHPDVRKIGFTGSTEV 269
Query: 258 GKILYSHCSQG-IKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFL 316
GK + C+ +K++SLELGG +P I++++ +L KAV M++ F N G+ C+AA R
Sbjct: 270 GKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLF 329
Query: 317 IQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKV 376
++E + +QFV+ + VE + G+ N GP + A + K+ Q + +GA +
Sbjct: 330 VEESIHNQFVQKV-VEEVEKMKIGN-PLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATL 387
Query: 377 ILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE--EESLCVANNSN 434
+ GG +V + G FF PT+ T++ M EE FGP+ + +F + L AN +
Sbjct: 388 VCGGNQVPRPGF-FFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATE 446
Query: 435 TGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAAFGGVKESGLGREGSRHGMEE 494
GLA FT DI++A V KLQ G V IN + A FGG K+SG G++ + E
Sbjct: 447 FGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNE 506
Query: 495 FTQIK 499
+ +IK
Sbjct: 507 YLRIK 511
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 485 bits (1250), Expect = e-168
Identities = 137/484 (28%), Positives = 223/484 (46%), Gaps = 17/484 (3%)
Query: 26 LSTYTQAYINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQT 84
L INGE V + K +NPA D+ + V + + AI SA EAF+ W
Sbjct: 34 LGKEYPLIINGERVTTEDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQTWRNV 93
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTY 144
P+ER +L + + K + + E+GKP E+ + A F+++++ +
Sbjct: 94 NPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQMIELN 153
Query: 145 GELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPL 204
++ P+GV I+PWNF +A++ + G T V+KPA TP+
Sbjct: 154 RGKEILSRPGEQNRYFYTPMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPV 213
Query: 205 TALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSH 264
A + +A +PKGV+N V S VG L P + I+FTGS VG LY
Sbjct: 214 VAAKFVEVLEDAGLPKGVINYVPGS---GAEVGDYLVDHPKTSLITFTGSKDVGVRLYER 270
Query: 265 CSQ------GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQ 318
+ +KR+ +E+GG +V +A+L A + + F GQ C A +R +I
Sbjct: 271 AAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIH 330
Query: 319 EQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
+ V+D+ +E V + K+ GD + N +GP+I+ EK+ S ++ +G +++
Sbjct: 331 KDVYDEVLEKT-VALAKNLTVGDPT-NRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMT 387
Query: 379 GGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLA 438
GG + G F PTI+ ++ P+ + EE+FGPV K + +L +ANN+ GL
Sbjct: 388 GGEGDSSTGF-FIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLT 446
Query: 439 GYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA--FGGVKESGLG-REGSRHGMEEF 495
G T + + + ++ VG + N FGG K SG + G +
Sbjct: 447 GAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALH 506
Query: 496 TQIK 499
Q K
Sbjct: 507 MQAK 510
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 482 bits (1244), Expect = e-167
Identities = 133/485 (27%), Positives = 222/485 (45%), Gaps = 19/485 (3%)
Query: 26 LSTYTQAYINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQT 84
+ YI GEWV + ++ NP+ E + G + + A+ +A +AF+ W
Sbjct: 34 FGRHYPLYIGGEWVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDW 93
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTY 144
++R +L + + K+ L + E GK E+ +V A F+++++ A R
Sbjct: 94 PQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYR 153
Query: 145 GELVPSPVKSKELLM-VREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTP 203
V E PLG +I PWNFP+A+ T + +A G T + KPAED
Sbjct: 154 YPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAV 213
Query: 204 LTALALAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYS 263
+ + + HEA P GV+N + VG L P + I+FTGS +VG +Y
Sbjct: 214 VVGAKVFEIFHEAGFPPGVVNFLPGV---GEEVGAYLVEHPRIRFINFTGSLEVGLKIYE 270
Query: 264 HCSQ------GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLI 317
+ KR +E GG IV A+ A G + + + GQ C AA+R ++
Sbjct: 271 AAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLIL 330
Query: 318 QEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVI 377
+ ++ +E + ++ + G + +LGP+++ Q KV S ++ ++G +++
Sbjct: 331 TQGAYEPVLERV-LKRAERLSVGPA--EENPDLGPVVSAEQERKVLSYIEIGKNEG-QLV 386
Query: 378 LGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGL 437
LGG ++ G F APT+ T + P EE+FGPV I+ K E+L VAN++ GL
Sbjct: 387 LGGKRLEGEGY-FIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGL 445
Query: 438 AGYFFTNDISQAWRVGKKLQVGMVGINEGIISHTEAA--FGGVKESGLGRE-GSRHGMEE 494
G ++ ++ VG + N I FGG K SG + G+ +
Sbjct: 446 TGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRL 505
Query: 495 FTQIK 499
F ++K
Sbjct: 506 FLEMK 510
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 467 bits (1205), Expect = e-161
Identities = 92/518 (17%), Positives = 176/518 (33%), Gaps = 52/518 (10%)
Query: 26 LSTYTQAYINGEWVHSS-KKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQT 84
++ + ++ G+W+ + + +P L V G++ + + ++
Sbjct: 4 MTELLKNHVAGQWIAGTGAGITLTDPVTGVALVRVSSEGLDLARAFSFAREDGGAALRAL 63
Query: 85 TPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTY 144
T +R L +K L+ + I T SG +S ++ + ++++
Sbjct: 64 TYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLGASLG 123
Query: 145 GELVPSPVKSKEL---------LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCV 195
++ L ++ GV I +NFP + K APAL +G +
Sbjct: 124 EVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFNFPSWGLWEKAAPALLSGVPVI 183
Query: 196 IKPAEDTPLTALALAALAHEAQI-PKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGS 254
+KPA T + A +A I P G L+++ S LL +SFTGS
Sbjct: 184 VKPATATAWLTQRMVADVVDAGILPPGALSIICG------SSAGLLDQIRSFDVVSFTGS 237
Query: 255 TQVGKILYSHCSQGIK--RLSLELGGNAPFIVYSNAN-----LQKAVSGAMAAKFRNCGQ 307
L +H + + RL+++ I+ ++A + + GQ
Sbjct: 238 ADTAATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQ 297
Query: 308 ACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQ 367
C A R + E + +E L G+ ND +G L++ Q E V + +
Sbjct: 298 KCTAIRRAFVPEAALEPVLEAL-KAKLAKITVGNPR-NDAVRMGSLVSREQYENVLAGIA 355
Query: 368 DAISKGAKVILGGGKVTKLGSK----FFAPTIL--TNITPDMLCYTEEVFGPVAVCIKFK 421
+ AP + + L + EVFGPVA ++
Sbjct: 356 ALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHDVEVFGPVASVAPYR 415
Query: 422 T--------EEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGIN--------- 464
E ++ +A L ++ND + R+ +L ++
Sbjct: 416 VTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHS 475
Query: 465 --EGIISHTEAAFGGVKESGLGRE-GSRHGMEEFTQIK 499
+ GG +G G E G + + +
Sbjct: 476 QTGHGNVMPMSLHGGPGRAGGGEELGGLRALAFYHRRS 513
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 421 bits (1084), Expect = e-143
Identities = 117/524 (22%), Positives = 190/524 (36%), Gaps = 59/524 (11%)
Query: 10 SVTVKQMHMKYLQKLCLSTYTQAYINGEWVHSS---KKFPVYNPANDEHLADVPDMGVED 66
V + ++ + + + + + GEW+ + P + PA+D + V E
Sbjct: 10 GVDLGTENLYFQSMMIFTPKGKHLVAGEWLDGAGTFASAPAHGPAHDFAVGTV-----EL 64
Query: 67 VQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEV 126
V A +A+EAF + ++ KER L+ E+E +A+ EI +QE+G P GE
Sbjct: 65 VNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEARLNGER 124
Query: 127 VYANSFVDWFSEEAR------RTYGELVP--SPVKSKELLMVREPLGVVGLITPWNFPMA 178
+ F++ R +P P +E+ +V+ P+G V + NFP+A
Sbjct: 125 GRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLA 184
Query: 179 MIT--RKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQ----IPKGVLNVVTSSRTN 232
T A ALAAGC V+K P T +A A + GV +++
Sbjct: 185 FSTAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQ---GG 241
Query: 233 ANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIK--RLSLELGGNAPFIVYSNANL 290
+ VG L PH+ + FTGS G+ L+ C+ + ELG P + A
Sbjct: 242 SRDVGHALVQHPHIKAVGFTGSLAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALK 301
Query: 291 QKA---VSGAMAAKFRNCGQACVAANRFLIQEQV-FDQFVEMLKVEITKSFIQGDTSKND 346
+A G + GQ C ++ E D+F + K Q
Sbjct: 302 ARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADADRFTTAAVEALAKVAPQ------- 354
Query: 347 KCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDML-- 404
L I A + A K +L + +P + L
Sbjct: 355 -TMLTDGIAKAYRDGQARF---ATRNAVKPLLATES----SGRDASPNLFETTGAQFLAD 406
Query: 405 -CYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFT--NDISQAWRVGKKLQ--VG 459
EEVFGP+ + ++ + E +A L D+ A R+ L+ G
Sbjct: 407 HALGEEVFGPLGLVVRVGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAG 466
Query: 460 MVGINE---GIISHTEAAFGG-VKESGLGREGS--RHGMEEFTQ 497
V +N G+ GG S S + F +
Sbjct: 467 RVLVNGFPTGVEVVDSMVHGGPYPASTNFGATSVGTMSIRRFLR 510
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 414 bits (1065), Expect = e-134
Identities = 120/480 (25%), Positives = 210/480 (43%), Gaps = 17/480 (3%)
Query: 30 TQAYINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKE 88
+ING+ V ++ P NP E L + G +V AI +AK AF W T P+
Sbjct: 532 YPLFINGKEVRTNDLIPTVNPNKPSEVLGQICQAGTTEVGDAIAAAKAAFPAWRDTDPRT 591
Query: 89 RGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV 148
R L + + L+ E GK ++ +V A F+++++ E R
Sbjct: 592 RAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLEYYAREMIRLGQPQR 651
Query: 149 PSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALA 208
+ EP GV +I PWNFP+A+ + A+ G V KP+ T +
Sbjct: 652 VGHAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASAAIVTGNCVVFKPSGITSIIGWH 711
Query: 209 LAALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ- 267
L L EA +P+GV N + +G L P ++ I+FTGS + G + ++
Sbjct: 712 LVELFREAGLPEGVFNFTPGRG---SVMGDYLVDHPDISLIAFTGSMETGLRIIERAAKV 768
Query: 268 -----GIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
+K++ E+GG I+ +A+L +AV + + F GQ C A +R ++ + V+
Sbjct: 769 HPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVY 828
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
D+F+E L V + K+ G + + +G + + ++ + + +G +
Sbjct: 829 DKFIERL-VSMAKATKVGPSE-DPANYMGAVADDKAMKSIKEYAEIGKREGHVL-YESPV 885
Query: 383 VTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFF 442
G F TI+ I P+ EE+FGPV ++ K ++++ AN++ L G F
Sbjct: 886 PAGEGY-FVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIF 944
Query: 443 TNDISQAWRVGKKLQVGMVGINEGIISHTEAA--FGGVKESGLG-REGSRHGMEEFTQIK 499
+ + ++ +VG + IN FGG + SG+G + G + F +
Sbjct: 945 SRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGTKAGGPDYLLHFMDPR 1004
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 387 bits (996), Expect = e-130
Identities = 89/489 (18%), Positives = 170/489 (34%), Gaps = 46/489 (9%)
Query: 41 SSKKFPVYNPANDEHLA-DVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKE 99
+ F N E L P +V A +A + + + +R +L+ E
Sbjct: 5 TDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASE 64
Query: 100 LEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELV--------PSP 151
LE + E+ P GE+ + + F++ +P
Sbjct: 65 LEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAP 124
Query: 152 VKSKELLMVREPLGVVGLITPWNFPMAMITR--KVAPALAAGCTCVIKPAEDTPLTALAL 209
+ ++ + LG V + NFP+A A ALAAGC ++K P T+ +
Sbjct: 125 LPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAHPGTSQIV 184
Query: 210 AALAHEAQ----IPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHC 265
A +A +P+ + ++ + ++G+ L + P + + FTGS G+ L++
Sbjct: 185 AECIEQALKQEQLPQAIFTLLQGN---QRALGQALVSHPEIKAVGFTGSVGGGRALFNLA 241
Query: 266 SQGIKRLS--LELGGNAPFIVYSNANLQKA--VSGAMAAKFRNCGQACVAANR-FLIQEQ 320
+ + + ELG P ++ +A KA +A+ CGQ C F +
Sbjct: 242 HERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTP 301
Query: 321 VFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGG 380
F+E + I + + L P I + +V S D G V
Sbjct: 302 ETQAFIETAQSLIRQQ--------SPSTLLTPGIRDSYQSQVVSRGSDD---GIDVTFSQ 350
Query: 381 GKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGY 440
+ + S F + + + EE+FGP ++ + + + L ++ L
Sbjct: 351 AESPCVASALFVTS--SENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTAT 408
Query: 441 FFT--NDISQAWRVGKKLQ--VGMVGINE---GIISHTEAAFGGVKES---GLGREGSRH 490
D Q ++ +L+ G + N G+ GG +
Sbjct: 409 IHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVGAE 468
Query: 491 GMEEFTQIK 499
+ + +
Sbjct: 469 AIHRWLRPV 477
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 333 bits (855), Expect = e-109
Identities = 149/477 (31%), Positives = 233/477 (48%), Gaps = 21/477 (4%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
YINGEWV + + V NPA E L VP ED+ YA +A EAF+ WS+ R
Sbjct: 9 YINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRA 68
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPS 150
+L + + L +K+ LA ++T E+GK E+LGEV V++ + G+ + S
Sbjct: 69 RILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLAS 128
Query: 151 PVKSKELLMVREPLGVVGLITPWNFPMAMITR-KVAPALAAGCTCVIKPAEDTPLTALAL 209
E R P+GVVG I P+NFP M+ A+A G T ++KP+E TPL L
Sbjct: 129 IATDVEAANYRYPIGVVGGIAPFNFP-MMVPCWMFPMAIALGNTFILKPSERTPLLTEKL 187
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
L +A +PKGV NVV + N + P + ISF GS VG+ +Y S+ +
Sbjct: 188 VELFEKAGLPKGVFNVVYGAHDVVNG----ILEHPEIKAISFVGSKPVGEYVYKKGSENL 243
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
KR+ G IV ++ANL+ V+ + A F + G+ C+A ++E + D+F+ L
Sbjct: 244 KRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKL 303
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK 389
E G+ +D LGP+I ++ S ++ + +GA+++ G +
Sbjct: 304 -QEKVADIKIGN-GLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGY 361
Query: 390 FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQA 449
F PTI N+T +M + +E+F PV I+ K +E++ +AN S FT++ +
Sbjct: 362 FVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAI 421
Query: 450 WRVGKKLQVGMVGINEGI----ISHTEAAFGGVKESGLGREGSRHGMEE---FTQIK 499
+ + GM+GIN G+ F G K S G +G + +T+ K
Sbjct: 422 RYFRENIDAGMLGINLGVPAPMAFFP---FSGWKSSFFG-TLHANGKDSVDFYTRKK 474
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 340 bits (874), Expect = e-107
Identities = 127/479 (26%), Positives = 207/479 (43%), Gaps = 29/479 (6%)
Query: 34 INGEWVHSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVL 93
+ + + A L + D + A+ +A+ F WS+T R L
Sbjct: 519 VEFGARTALDQLLTDVKAETGDLKPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAAL 578
Query: 94 KRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVK 153
++ LE ++ +E GK ++L E+ A F +++ + R+ +G P
Sbjct: 579 EQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGP 638
Query: 154 SKEL-LMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAAL 212
+ E + GV I+PWNFP+A+ +V AL AG + V KPAE TP A AL
Sbjct: 639 TGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVAL 698
Query: 213 AHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQG---I 269
HEA IPK L +VT +G L P +AG+ FTGST+V + + + I
Sbjct: 699 LHEAGIPKSALYLVTGDG----RIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPI 754
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEML 329
L E GG I + A ++ + + FR+ GQ C A +QE V D+ +EM+
Sbjct: 755 VPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMV 814
Query: 330 KVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSK 389
+ GD S + ++GP+I++ +++D+ + ++ ++ G
Sbjct: 815 -AGAARELKIGDPS-DVATHVGPVIDVEAKQRLDAHIARMKTEA-RLHFAGPAPE---GC 868
Query: 390 FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE--EESLCVANNSNTGLAGYFFTNDIS 447
F AP I L TEEVFGP+ ++++ E E L + GL +
Sbjct: 869 FVAPHIFELTEAGQL--TEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDD 926
Query: 448 QAWRVGKKLQVGMVGINEGIISHTEAA------FGGVKESGLG-REGSRHGMEEFTQIK 499
+ ++QVG + +N +I A FGG SG G + G H + F +
Sbjct: 927 SIEAIIDRVQVGNIYVNRNMI----GAVVGVQPFGGNGLSGTGPKAGGPHYLARFATEQ 981
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 325 bits (835), Expect = e-106
Identities = 132/481 (27%), Positives = 237/481 (49%), Gaps = 25/481 (5%)
Query: 33 YINGEWV--HSSKKFPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERG 90
+I+G+ V S + ++NPA E V D+ A+ SAK A +W+ T P+ R
Sbjct: 30 FIDGKRVAGTSGRVSNIFNPATGEVQGTVALASDADLAAAVESAKAAQPKWAATNPQRRA 89
Query: 91 IVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPS 150
V ++++ L N LAE++++E GK ++ G++V ++ E
Sbjct: 90 RVFMKFVQLLNDNMNELAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGIPHLQKSEFTEG 149
Query: 151 PVKSKELLMVREPLGVVGLITPWNFPMAMITR-KVAPALAAGCTCVIKPAEDTPLTALAL 209
++ +R+P+G+ ITP+NFP MI APA+A G ++KP+E P + L
Sbjct: 150 AGPGIDMYSIRQPVGIGAGITPFNFP-GMIPMWMFAPAIACGNAFILKPSERDPSVPIRL 208
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGI 269
A L EA +P G+LNVV + ++ + T P +A +SF GST + + +Y +
Sbjct: 209 AELMIEAGLPAGILNVVNGDKGAVDA----ILTHPDIAAVSFVGSTPIARYVYGTAAMNG 264
Query: 270 KRLSLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAAN-RFLIQEQVFDQFVEM 328
KR G I+ +A+L +A + + A + + G+ C+A + + E+ ++ ++
Sbjct: 265 KRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETANRLIDK 324
Query: 329 LKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGS 388
L V + +S G ++K ++GP++ +++ S++ I +GAK+++ G G
Sbjct: 325 L-VPMVESLRIGP-YTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGY 382
Query: 389 K---FFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTEEESLCVANNSNTGLAGYFFTND 445
+ F + ++TPDM Y E+FGPV ++ + EE+L + G +T D
Sbjct: 383 ENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYEEALSLPMKHEYGNGVAIYTRD 442
Query: 446 ISQAWRVGKKLQVGMVGINEGI----ISHTEAAFGGVKESGLGREGSRHGMEE---FTQI 498
A ++ +GMVG+N I H+ FGG K S G + ++HG + +T+
Sbjct: 443 GDAARDFASRINIGMVGVNVPIPVPLAYHS---FGGWKSSSFG-DLNQHGTDSIKFWTRT 498
Query: 499 K 499
K
Sbjct: 499 K 499
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 305 bits (782), Expect = 8e-99
Identities = 75/437 (17%), Positives = 157/437 (35%), Gaps = 45/437 (10%)
Query: 56 LADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQES 115
L D +++V+ I SA +A ++ + + ++ ++K G ++ LA++ +E+
Sbjct: 3 LEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEET 62
Query: 116 GKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNF 175
G + S + + +T G + K+++ V PLGVV + P
Sbjct: 63 GFGIWQDKVIKNVFASKHVYNYIKDMKTIG--MLKEDNEKKVMEVAVPLGVVAGLIPSTN 120
Query: 176 PMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAAL----AHEAQIPKGVLNVVTSSRT 231
P + + K ++ AG + V P + L + A +A PKG ++ +T
Sbjct: 121 PTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAISCMT---V 177
Query: 232 NANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQ 291
L A I TG + + K YS GN P + +AN+
Sbjct: 178 PTIQGTDQLMKHKDTAVILATGGSAMVKAAYSS----GTPAIGVGPGNGPAFIERSANIP 233
Query: 292 KAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSK------N 345
+AV + +K + G C + +++ + + + + + +
Sbjct: 234 RAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFILR 293
Query: 346 DKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLC 405
++ P I V+ + ++ + A+V++ T + +
Sbjct: 294 PNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAE---------------ETKVGAKIP- 337
Query: 406 YTEEVFGPVAVCIKFKTEEESLCVANNS----NTGLAGYFFTNDISQAWRVGKKLQVGMV 461
Y+ E P+ +T +E+ ++ + G + D K V +
Sbjct: 338 YSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKPVSRL 397
Query: 462 GINEGIISHTEAAFGGV 478
+N T A GG+
Sbjct: 398 LVN------TPGALGGI 408
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 293 bits (753), Expect = 1e-94
Identities = 79/431 (18%), Positives = 155/431 (35%), Gaps = 36/431 (8%)
Query: 59 VPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKP 118
+P + ++ I K+A E+++ + ++ + + + LA+ +ESG
Sbjct: 1 MPVTNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMG 60
Query: 119 PTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMA 178
E + S + + +T G + + + + EP+G++ I P P +
Sbjct: 61 IVEDKVIKNHFASEFIYNKYKDEQTCG--ILEEDDNLGTMTIAEPVGIICGIVPTTNPTS 118
Query: 179 MITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQI----PKGVLNVVTSSRTNAN 234
K +L + P + A L +A + PK ++ + +
Sbjct: 119 TAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQP---SV 175
Query: 235 SVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAV 294
+ L +A I TG + K YS K GN P ++ A++++AV
Sbjct: 176 ELSNALMKHDDIALILATGGPGMVKAAYSSG----KPAIGVGAGNVPVVIDETADIKRAV 231
Query: 295 SGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLI 354
+ + +K + G C + ++ ++V+D+ E + DK LI
Sbjct: 232 ASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFA-SHKAHVLSKT--DADKVRKVLLI 288
Query: 355 NLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPV 414
+ A K+ AI++ A G KV +K L ++ D + E P
Sbjct: 289 DGALNAKIVGQPATAIAEMA-----GVKVPA-DTKVLIGEGLGKVSYDD-AFAHEKLSPT 341
Query: 415 AVCIKFKTEEESLCVA----NNSNTGLAGYFFTNDISQAWRV---GKKLQVGMVGINEGI 467
+ E+++ A G +TN A R+ G K++ + IN
Sbjct: 342 LGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTARILIN--- 398
Query: 468 ISHTEAAFGGV 478
GG+
Sbjct: 399 ---IPTTHGGI 406
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 270 bits (692), Expect = 3e-84
Identities = 110/489 (22%), Positives = 195/489 (39%), Gaps = 32/489 (6%)
Query: 33 YINGEWVHSSKKFPVYNPAN-DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGI 91
+ E V +S +P N +A + AI +A A ++W +R
Sbjct: 67 VVGDEEVWTSDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQ 126
Query: 92 VLKRWLKELEG-NKQALAEIMTQESGKPPTE-SLGEVVYANSFVDWFSEEARRTYGELVP 149
V + L G + + GK + + F + ++ A GE
Sbjct: 127 VFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPI 186
Query: 150 SPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALAL 209
S S + R G V I+P+NF A+ G + KP++ L + A+
Sbjct: 187 SVPPSTNHTVYRGLEGFVAAISPFNFT-AIGGNLAGAPALMGNVVLWKPSDTAMLASYAV 245
Query: 210 AALAHEAQIPKGVLNVVTSSRTNANSVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQ-- 267
+ EA +P ++ V + + G + +S H+ GI+FTGS K L+ +Q
Sbjct: 246 YRILREAGLPPNIIQFVPAD---GPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNL 302
Query: 268 ----GIKRLSLELGG-NAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVF 322
RL+ E GG N V+S+A++ VSG + + F GQ C A +R + + ++
Sbjct: 303 DRFRTFPRLAGECGGKNF-HFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLW 361
Query: 323 DQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGK 382
Q L +E GD +++ +I+ ++ ++ A S + IL GG+
Sbjct: 362 PQIKGRL-LEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQ 420
Query: 383 VTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCIKFKTE--EESLCVANNSNT-GLAG 439
+ + P I+ + P EE+FGPV + + E+L + +++ + GL G
Sbjct: 421 CNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTG 480
Query: 440 YFFTNDISQAWRVGKKLQ--VGMVGINEGIISHTEAA------FGGVKESGLG-REGSRH 490
F D + + L+ G IN+ + FGG + SG + G H
Sbjct: 481 AVFAQDKAIVQEATRMLRNAAGNFYINDKST----GSVVGQQPFGGARASGTNDKPGGPH 536
Query: 491 GMEEFTQIK 499
+ +T +
Sbjct: 537 YILRWTSPQ 545
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 235 bits (602), Expect = 5e-72
Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 36/449 (8%)
Query: 64 VEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES- 122
+ + A+ A+ AF + R L+ + ++ +Q L + + K +
Sbjct: 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAY 76
Query: 123 -------LGEVVYA-NSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWN 174
L E+ Y +W ++E + + EPLGVV +I WN
Sbjct: 77 YEEVVYVLEEIEYMIQKLPEWAADEPVEK--TPQTQQDELY---IHSEPLGVVLVIGTWN 131
Query: 175 FPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVVTSSRTNAN 234
+P + + + A+AAG V+KP+E + A LA + + + K + V+
Sbjct: 132 YPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQY-LDKDLYPVINGGV---- 186
Query: 235 SVGKLLCTSP--HVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQK 292
L H I +TGST VGKI+ + ++ + ++LELGG +P V N +L
Sbjct: 187 PETTELLKERFDH---ILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDV 243
Query: 293 AVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGP 352
A KF N GQ CVA + L + +Q VE LK + + + G+ +K + + G
Sbjct: 244 ACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFY--GEDAKKSR-DYGR 300
Query: 353 LINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFG 412
+I+ ++V ++ +G KV GG +++ APTILT++ P EE+FG
Sbjct: 301 IISARHFQRVMGLI-----EGQKVAYGGTGDAA--TRYIAPTILTDVDPQSPVMQEEIFG 353
Query: 413 PVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGII--SH 470
PV + ++ EE++ N LA Y F+++ ++ + G V N+ I+ +
Sbjct: 354 PVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITL 413
Query: 471 TEAAFGGVKESGLGREGSRHGMEEFTQIK 499
FGGV SG+G + E F+ +
Sbjct: 414 HSLPFGGVGNSGMGSYHGKKSFETFSHRR 442
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 218 bits (556), Expect = 2e-65
Identities = 107/461 (23%), Positives = 197/461 (42%), Gaps = 39/461 (8%)
Query: 53 DEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMT 112
D+ + + + + K F + R L+R + + NK+AL +
Sbjct: 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALA 75
Query: 113 QESGKPPTES--------LGEVVYA-NSFVDWFSEEARRTYGELVPSPVKSKELLMVREP 163
++ GKP L E+ +A +W + + + + +P + +V+EP
Sbjct: 76 EDLGKPKDVVDLAEIGAVLHEIDFALAHLDEWVAPVSVPS--PDIIAPSECY---VVQEP 130
Query: 164 LGVVGLITPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVL 223
GV +I P+N+P+ + + A+ G TC+IKP+E TP T+ + + EA +
Sbjct: 131 YGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETSAVIEKIIAEA-FAPEYV 189
Query: 224 NVVTSSRTNANSVGKLLCTSP--HVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAP 281
V+ R L + P I FTGS VGK++ ++ + + LELGG P
Sbjct: 190 AVIQGGR----DENSHLLSLPFDF---IFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCP 242
Query: 282 FIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGD 341
IV +A+L + V+ M KF N GQ +A + + V D +E L +
Sbjct: 243 LIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTEL---- 298
Query: 342 TSKNDKCNLGPLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITP 401
+ + G L+ QV+++ S+++ +V++G + + + T++ +
Sbjct: 299 ---PEINSTGKLVTERQVQRLVSLLEAT---QGQVLVGSQ--ADVSKRALSATVVDGVEW 350
Query: 402 DMLCYTEEVFGPVAVCIKFKTEEESLCVANNSN-TGLAGYFFTNDISQAWRVGKKLQVGM 460
+ +EE+FGP+ ++F + ++ N + LA Y F D+ A + ++Q G
Sbjct: 351 NDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQSGD 410
Query: 461 VGINEGI--ISHTEAAFGGVKESGLGREGSRHGMEEFTQIK 499
+N + FGG+ SG+G FT K
Sbjct: 411 AQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKK 451
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 3e-09
Identities = 97/565 (17%), Positives = 177/565 (31%), Gaps = 189/565 (33%)
Query: 7 LGYSVTV----KQMHMKYLQKLCLSTYTQAYINGEWVHSSKKFPVYNPANDEHLADVPDM 62
LGY ++ K + LCL+ + Y+ G +H+ L D
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA---LAA-------KLLQENDT 114
Query: 63 GVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTES 122
+ + I + A + K+ L + A+++ G+ T+
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGNAQLVAIFGGQGNTDD 168
Query: 123 -LGEV--VYA--NSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPM 177
E+ +Y + V + + T EL+ + + ++++ G+ I W
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLN--ILEW---- 218
Query: 178 AMITRKVAPALAAGCTCVIKPAEDTPLTA-LALAALAHEAQIPKGVLNVVTSSRTNAN-- 234
++ +TP L ++ P L V A+
Sbjct: 219 ------------------LENPSNTPDKDYLLSIPIS----CP---LIGVIQL---AHYV 250
Query: 235 SVGKLLCTSPHVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSN--ANLQK 292
KLL +P G+T SQG+ ++ A I ++ +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATG--------HSQGL--VT------AVAIAETDSWESFFV 294
Query: 293 AVSGAMAAKFRNCGQACV-AANRFLIQEQVFDQFVE--------MLKVE-ITKSFIQGDT 342
+V A+ F G C A + + + +E ML + +T+ +Q
Sbjct: 295 SVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--- 350
Query: 343 SKNDKCNLGPLINLAQVEKVDSIVQDAISKGAK-VILGG------GKVTKLGSKFFAPTI 395
+K N +L ++V I ++ GAK +++ G G L K AP+
Sbjct: 351 DYVNKTNS----HLPAGKQV-EI---SLVNGAKNLVVSGPPQSLYGLNLTL-RKAKAPSG 401
Query: 396 L--TNITPDMLCYTEE------VFGPVAV---------------------CIKFKTEEES 426
L + I P ++E F PVA + F ++
Sbjct: 402 LDQSRI-P----FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 427 LCVANNSNTGLAGYFFTNDISQAWRVGKKLQVGMVGINEGIIS-------HTEAA----- 474
+ V + T D G L+V I+E I+ E
Sbjct: 457 IPV-----------YDTFD-------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 475 -----FGGVKESGLG------REGS 488
FG SGLG ++G+
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGT 523
Score = 48.5 bits (115), Expect = 5e-06
Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 62/266 (23%)
Query: 62 MGVEDVQYA-IMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPT 120
MG++ Y +A++ + + G + L + N L E GK
Sbjct: 1631 MGMDL--YKTSKAAQDVWNRADNHFKDTYGFSI---LDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 121 ESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMI 180
E+ +++ + VD + + + E+ R G++
Sbjct: 1686 ENYSAMIFE-TIVD-GKLKTEKIFKEINEHSTS----YTFRSEKGLLSA----------- 1728
Query: 181 TRKVAPALAA---GCTCVIKPAEDTPLTAL----------ALAALAHEAQIPKGVLNV-- 225
T+ PAL +K P A ALA+LA V+++
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA-------DVMSIES 1781
Query: 226 ---VTSSRTNANSVGKLLCTSPHV--AGISFTGSTQV--GKILYSHCSQGIKRLSLELGG 278
V R G + + G S G + G++ S + ++ + +G
Sbjct: 1782 LVEVVFYR------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 279 NAPFIV----YSNANLQKAVSGAMAA 300
++V Y+ N Q +G + A
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRA 1861
Score = 33.1 bits (75), Expect = 0.24
Identities = 44/268 (16%), Positives = 75/268 (27%), Gaps = 84/268 (31%)
Query: 267 QGIKRL--SLELGGNAPFIVYSNANLQKAVSGAMAAKFRNCGQACVAANRFLIQEQVFDQ 324
QG + ++L Y + + V + F I + V +
Sbjct: 1624 QGSQEQGMGMDL--------YKTSKAAQDV-------WNRADNHFKDTYGFSILDIVINN 1668
Query: 325 FVEMLKVEITKSFIQGDTSKNDKCNLGPLI---NLAQVEKVDSIVQDAISKGAKVILGGG 381
V +T F G+ K + N +I + K + I ++
Sbjct: 1669 -----PVNLTIHF-GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 382 KVTKLGSKFFA-PTILTNITPDMLCYTEEVFGPVAVCIKFKT-EEESLCVANNSNTG--- 436
K L + F P + + F+ + + L A+ + G
Sbjct: 1723 KG-LLSATQFTQPALTL----------------MEKAA-FEDLKSKGLIPADATFAGHSL 1764
Query: 437 --------LAGYFFTNDISQAWRV----GKKLQ------------VGMVGINEGIISHT- 471
LA I V G +Q GM+ IN G ++ +
Sbjct: 1765 GEYAALASLADVM---SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 472 -EAAFGGVKESGLGREGSRHGMEEFTQI 498
+ A V E R G R G +I
Sbjct: 1822 SQEALQYVVE----RVGKRTG--WLVEI 1843
Score = 31.2 bits (70), Expect = 0.96
Identities = 34/225 (15%), Positives = 58/225 (25%), Gaps = 88/225 (39%)
Query: 20 YLQKL-CLSTYTQAYINGEWVHSSKK------F-PVYNPANDEHLADVPDMGVEDVQYAI 71
L+K S Q+ I S +K F PV +P + L D+ +D+
Sbjct: 392 TLRKAKAPSGLDQSRI----PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL---- 443
Query: 72 MSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPPTESLGEVVYANS 131
K ++ + + VY
Sbjct: 444 --VKNNVS-FNA-------------------------------------KDIQIPVY--D 461
Query: 132 FVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLITPWNFPMAMITRKVAPALAAG 191
D + R G + V ++R P+ +
Sbjct: 462 TFDG--SDLRVLSGSISERIVD----CIIRLPV---------KWET---------TTQFK 497
Query: 192 CTCVIKPAED-TPLTALALAALAHEAQIPKGVLNVVTSSRTNANS 235
T ++ D P A L L H + GV V+ + + N
Sbjct: 498 ATHIL----DFGPGGASGLGVLTHRNKDGTGV-RVIVAGTLDINP 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 61/457 (13%), Positives = 126/457 (27%), Gaps = 161/457 (35%)
Query: 36 GEWVHSSKK-FPVYNPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVL- 93
GE + K V+ A ++ D D V+D+ +I+S +E + L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNF-DCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 94 -----------KRWLKE-LEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEAR 141
+++++E L N + L + E +P S+ +Y E+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMY--------IEQRD 117
Query: 142 RTYGE---LVPSPVKSKELLM-VREPL-------GVV--GLITPWNFPMAMITRKVAPAL 188
R Y + V + + +R+ L V+ G +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--------V----------- 158
Query: 189 AAGC--TCVIKPAEDTPLTALALAALAHEAQIPKGV--LNVVTSSRTNANSVGKLLCTSP 244
G T + + + ++ + LN + C SP
Sbjct: 159 -LGSGKTW---------VALDVCLSYKVQCKMDFKIFWLN-----------LKN--CNSP 195
Query: 245 HVAGISFTGSTQVGKILYSHCSQGIKRLSLELGGNAPFIVYSNANLQKAVSGAMAAK-FR 303
V ++L Q I ++ I ++Q + + +K +
Sbjct: 196 E----------TVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 304 NCGQACVAANRFLIQEQVFDQFVEMLKVEITKSFIQGDTSKNDKCNLGPLINLAQVEKV- 362
NC L+ V + + +F N C K+
Sbjct: 245 NC---------LLVLLNVQN-------AKAWNAF-------NLSC------------KIL 269
Query: 363 ----DSIVQDAISKGAKVILGGGKVTKLGSKFFAPTILTNITPDMLCYTEEVFGPVAVCI 418
V D L T + + T +TPD + + +
Sbjct: 270 LTTRFKQVTDF--------LSAATTTHISLDHHSMT----LTPD---EVKSLL---LKYL 311
Query: 419 KFKTEE--ESLCVANNSNTGLAGYFFTNDIS--QAWR 451
+ ++ + N + + ++ W+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Score = 40.6 bits (94), Expect = 0.001
Identities = 54/447 (12%), Positives = 124/447 (27%), Gaps = 126/447 (28%)
Query: 11 VTVKQMH-----MKYLQKLCL---STYTQA-------YINGEWVHSSKKFPVYNPANDEH 55
+ +K + ++ LQKL +T + + + + + + +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 56 LADVPDMGVEDVQYAIMSAKEAFEQWSQT--TPKERGIVLKRWLKELEGNKQALAEIMTQ 113
L V +VQ A A AF + T + + + L +
Sbjct: 247 L-LVLL----NVQNA--KAWNAFNLSCKILLTTRFKQVTDF-----LSAATTTHISLDHH 294
Query: 114 ESGKPPTESLGEVVYANSFVDWFSEEARRTYGELVPSPVKSKELLMVREPLGVVGLI--- 170
P E + + +L P V + P + +I
Sbjct: 295 SMTLTPDEVKS------LLLKYLDCRP----QDL-PREVLT------TNPR-RLSIIAES 336
Query: 171 -----TPWNFPMAMITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNV 225
W+ + K+ + + V++PAE + L+ A IP +L++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSL 394
Query: 226 V--TSSRTNANSVGKLLCT-------------SPHVAGISFTGSTQVGKILYSHCSQGIK 270
+ +++ V L S I ++ H +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALH-----R 447
Query: 271 RL--------SLELGGNAP---------FIVY--SNANLQKAVSGA---------MAAKF 302
+ + + P I + N + ++ + K
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 303 RNCGQACVAANRFL------------IQEQ--VFDQFVEMLKVEITKSFIQGDTSKNDKC 348
R+ A A+ L I + +++ V + F+
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-----LDFLPKIEENLICS 562
Query: 349 NLGPLINLAQVEKVDSIVQDAISKGAK 375
L+ +A + + ++I ++A + +
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.030
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 267 QGIKRL--SLEL--GGNAPFIVYSNANLQ 291
Q +K+L SL+L +AP + A ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAI-KATME 47
Score = 28.0 bits (61), Expect = 4.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 12/32 (37%)
Query: 182 RKVAPALAAGCTCVIKP-AEDT-PLTALALAA 211
+K+ +L K A+D+ P ALA+ A
Sbjct: 23 KKLQASL--------KLYADDSAP--ALAIKA 44
>3mn2_A Probable ARAC family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 108
Score = 31.4 bits (72), Expect = 0.19
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 25/106 (23%)
Query: 53 DEHLADVPDMGVEDV-QYAIMSAK---EAFEQWSQTTPKERGIVLKRWLKE--LEGNKQA 106
+ + + +E + +S++ +AF++ +P + K L+
Sbjct: 12 EANWMR--PITIEKLTALTGISSRGIFKAFQRSRGYSPM-------AFAKRVRLQHAHNL 62
Query: 107 LAEIMTQESGKPPTESLGEVVYANSFVDW--FSEEARRTYGELVPS 150
L++ ++ + F + F+ + R +GE PS
Sbjct: 63 LSD-------GATPTTVTAAALSCGFSNLGHFARDYRDMFGEK-PS 100
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 29.9 bits (68), Expect = 1.7
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 159 MVREPLGVVGLITPWNFPMAMITRKVAPALAAGCTCV---IKPAEDTPL-----TALALA 210
M++E L V I N A V AL G T K + A
Sbjct: 13 MMKELLSVY-FIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQ 71
Query: 211 ALAHEAQIP 219
A EA +P
Sbjct: 72 AACREAGVP 80
>2pju_A Propionate catabolism operon regulatory protein; structural
genomics, PRPR, transcriptional regulation, PSI- 2,
protein structure initiative; 2.10A {Escherichia coli}
SCOP: c.92.3.1
Length = 225
Score = 29.9 bits (67), Expect = 1.8
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 360 EKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAPTIL 396
E + + + G + ++G G +T L + I
Sbjct: 141 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIF 177
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 29.4 bits (65), Expect = 1.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
P M +V A+ + A + WS P
Sbjct: 19 PSMSSVEVDKAV---EMALQAWSSAVP 42
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A
{Tannerella forsythia} PDB: 2xs3_A
Length = 167
Score = 29.3 bits (65), Expect = 1.9
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
+ + + AI + AF WS +
Sbjct: 22 SHLTTTERENAI---RSAFALWSDKST 45
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 29.8 bits (67), Expect = 2.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 363 DSIVQDAISKGAKVILGGGKVTKLGSKFFAPT 394
SI + ++ A V LGGG K FA T
Sbjct: 189 GSITEQLLNARADVTLGGGA------KTFAET 214
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 29.0 bits (64), Expect = 2.5
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
PDM EDV YAI ++AF+ WS TP
Sbjct: 19 PDMNREDVDYAI---RKAFQVWSNVTP 42
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Length = 615
Score = 29.5 bits (67), Expect = 2.8
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 24/105 (22%)
Query: 54 EHLADVPDMGVEDVQYAIMSAK--EAFEQWSQTTPKER-----GI---------VLKRWL 97
L + + + + ++ ++ P R I L
Sbjct: 491 RDLLRTDLFRTKAGELSANGKRLLVNLDK-AKAAPLWRVLVALSIRHVGPTAARALATEF 549
Query: 98 KELEGNKQALAEIMTQESGKPPTESLGEVVYANSFVDWFSEEARR 142
L+ A + + E +G + A + +WF+ + R
Sbjct: 550 GSLDAIAAASTDQLAA------VEGVGPTI-AAAVTEWFAVDWHR 587
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 29.5 bits (65), Expect = 3.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
PDM EDV YAI ++AF+ WS TP
Sbjct: 18 PDMNREDVDYAI---RKAFQVWSNVTP 41
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 14/65 (21%)
Query: 169 LITPWNFPMAMITRKVAPALAAGCTCV---IKPAEDTPLT-----------ALALAALAH 214
L T + + ALA G + K + LA AH
Sbjct: 34 LCTDARRERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAH 93
Query: 215 EAQIP 219
Sbjct: 94 RYGAL 98
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage
on PAIR of basic residue disulfide bond, membrane,
metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M
Length = 181
Score = 28.7 bits (63), Expect = 3.6
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTP 86
P +G AI ++AF W TP
Sbjct: 22 PKVGEYATYEAI---RKAFRVWESATP 45
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea
jecorina}
Length = 340
Score = 28.8 bits (64), Expect = 4.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 354 INLAQVEKVDSIVQDAISKGAKVIL 378
++ + K D +VQ +S GA I+
Sbjct: 78 LDSTSISKYDQLVQGCLSLGAYCIV 102
>2g38_A PE family protein; protein-protein complex, structural genomics,
PSI, protein S initiative, TB structural genomics
consortium, TBSGC; 2.20A {Mycobacterium tuberculosis}
SCOP: a.25.4.1
Length = 99
Score = 27.1 bits (60), Expect = 4.9
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 4/37 (10%)
Query: 294 VSGAMAAKFRNCGQACVAANRFLIQEQVF-DQFVEML 329
VS A + V ++F L
Sbjct: 47 VSEKAATFLVEYARKYRQTIA---AAAVVLEEFAHAL 80
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, putative
glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus
prevotii}
Length = 276
Score = 28.3 bits (63), Expect = 5.1
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 413 PVAVCIKFKTEEESLCVANNSNTGLAGYFFTNDISQAWRVGKKLQ 457
+ V + S+ NN Y + IS+ K L
Sbjct: 19 QMKVLMT------SIY-INNPGRIFDVYLIHSRISEDKL--KDLG 54
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 27.2 bits (60), Expect = 5.2
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 49 NPANDEHLADVPDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALA 108
+ DE L E + ++ + W + KELE +
Sbjct: 23 SAVEDEGLKGKIS---EADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPII 79
Query: 109 EIMTQESGKPPTESLGE 125
+ Q +G P G
Sbjct: 80 SGLYQGAGGPGPGGFGA 96
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 28.7 bits (64), Expect = 5.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 363 DSIVQDAISKGAKVILGGGKVTKLGSKFFAPT 394
+ I D ++ GA V+L GG + + P
Sbjct: 133 NQIASDMLATGADVMLSGGL------RHWIPK 158
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 28.4 bits (64), Expect = 6.3
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 10/42 (23%)
Query: 182 RKVAPALAAGCTCVI----------KPAEDTPLTALALAALA 213
K+AP LA T V +PA + +A
Sbjct: 42 HKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMA 83
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 28.3 bits (63), Expect = 6.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 351 GPLINLAQVEKVDSIVQDAISKGAKVIL 378
G + N + KV V+ A G VI+
Sbjct: 96 GYIDNPSVKNKVKEAVEAAKELGIYVII 123
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 26.6 bits (59), Expect = 6.4
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 60 PDMGVEDVQYAIMSAKEAFEQWSQTTPKERGIVLKRWLKELEGNKQALAEIMTQESGKPP 119
P +ED + E W + +E+ ++ K+LE + + QES
Sbjct: 31 PKTSLEDA------TLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSL 84
Query: 120 TES 122
+S
Sbjct: 85 KDS 87
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 28.2 bits (64), Expect = 6.9
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 352 PLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAP 393
P+ +++ IV+ G +++ + K GS ++AP
Sbjct: 192 PVSEFIAPDRLAQIVERTRKGGGEIV----NLLKTGSAYYAP 229
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural
genomics, joint center for structural genomics; HET:
MSE; 1.23A {Salmonella typhimurium}
Length = 355
Score = 28.0 bits (63), Expect = 7.9
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 352 PLINLA---QVEKVDSIVQDAISKGAKVIL----GGGKVTKLGSKF---FAPTILTNITP 401
PLI + + +D V+ SK ++ + + +F AP +++ +
Sbjct: 270 PLILVKGEGKCRALDERVERFASKITDNLVVIDPKAYALDGIDDEFRWIMAPCVVSTLLV 329
Query: 402 DMLCY 406
D L
Sbjct: 330 DRLAA 334
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 28.0 bits (63), Expect = 8.7
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 180 ITRKVAPALAAGCTCVIKPAEDTPLTALALAALAHEAQIPKGVLNVV 226
+ L C I A D ++ A +I NVV
Sbjct: 61 VEGPFDETLLDSCWLAIA-ATDDDTVNQRVSDAAESRRIF---CNVV 103
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 27.7 bits (61), Expect = 8.7
Identities = 4/37 (10%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 362 VDSIVQDAISKGAKV--ILGGGKVTKLGSKFFAPTIL 396
++ + G + G +V ++G + +
Sbjct: 68 LEGGYDLGEAAGMALLAETGRARVVRVGFRPGVEVHI 104
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 27.9 bits (63), Expect = 9.4
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 352 PLINLAQVEKVDSIVQDAISKGAKVILGGGKVTKLGSKFFAP 393
PL L E++++IV+ G +++ + GS ++AP
Sbjct: 200 PLETLIPKERLEAIVERTRKGGGEIV----GLLGNGSAYYAP 237
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 27.6 bits (61), Expect = 9.8
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 349 NLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
+ G ++ V +++ A ++
Sbjct: 76 SDGGQWEKDDIDTVREVIELAEQNKMVAVV 105
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Length = 294
Score = 27.5 bits (61), Expect = 9.8
Identities = 2/30 (6%), Positives = 11/30 (36%)
Query: 349 NLGPLINLAQVEKVDSIVQDAISKGAKVIL 378
+ G ++ + +++ A ++
Sbjct: 53 SDGGQWEKDDIDTIREVIELAEQNKMVAVV 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,596,325
Number of extensions: 463079
Number of successful extensions: 1555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1250
Number of HSP's successfully gapped: 87
Length of query: 507
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 409
Effective length of database: 3,965,535
Effective search space: 1621903815
Effective search space used: 1621903815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)