BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3133
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 224/398 (56%), Gaps = 66/398 (16%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
EDITT++CR A+ +ELKTWKVDVVL+DG+PNVG +WV+DAY Q LTL AL+LA L
Sbjct: 91 EDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLAR 150
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GG F+TKVFRS+DY LLWIF+QLF+RV +TKPQASR ESAEIFVVCQ ++AP K+D+KF
Sbjct: 151 GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKF 210
Query: 122 FDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
FDPK+AFKE+ + + L K+ K KA GY LY V+ F+ P L
Sbjct: 211 FDPKFAFKEVEVQAKTVTELVTKK--KPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLS 268
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
A+E I D
Sbjct: 269 KASE----------------------------------------------------IMVD 276
Query: 242 DESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEK-------- 293
DE + +HP+TT +I+ CC+DIRVLGRK++R+LL W L +K KE+ K
Sbjct: 277 DEELAQHPATTEDIRVCCQDIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSS 336
Query: 294 ---EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQE 350
+ G E+ ++ +EE+E + + + E+K +E ELKRKKKK+ +E+ K +E
Sbjct: 337 GEEDEGNEEDSTAGTTEQPSKEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRE 396
Query: 351 KMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLIT 388
++ LKM L G + + + MF L IR L+ +T
Sbjct: 397 RVELKMDLPG-VSIADEGETGMFSLRTIRGQQLLEEVT 433
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKH 248
GYRSR+AFKLIQLNR+F+FLQK++ +DLCAAPGGW+QVA + M SS+I D +K
Sbjct: 23 GYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKP 82
Query: 249 PSTTVEIQECCKDIRVLGRKDVRNLLKWWKV 279
V +QE R R+ +R LK WKV
Sbjct: 83 LPNVVTLQEDITTERC--RQALRKELKTWKV 111
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 483 YRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIRA 540
YRK+ EIN RPI+KV EAKARKK+R +R+++ +KK E ++ D+S+ EK +R+
Sbjct: 721 YRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRS 778
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 166/406 (40%), Positives = 224/406 (55%), Gaps = 79/406 (19%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
+DITT++CR A+ +ELKTWKVDVVL+DG+PNVG +WV+DAY Q LTL AL+LA L
Sbjct: 91 QDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLAR 150
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GG F+TKVFRS+DY LLWIF+QLF+RV +TKPQASR ESAEIFVVCQ ++AP K+D+KF
Sbjct: 151 GGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKF 210
Query: 122 FDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
FDPK+AFKE+ + + L K+ K KA GY LY V+ F+ P L
Sbjct: 211 FDPKFAFKEVEVQAKTVTELVTKK--KPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLS 268
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
A+E I D
Sbjct: 269 KASE----------------------------------------------------IMVD 276
Query: 242 DESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKE------- 294
DE + +HP+TT +I+ CC+DIRVLGRK++R+LL W L +K KE+ K
Sbjct: 277 DEELAQHPATTEDIRVCCQDIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSS 336
Query: 295 ------------GGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
G ++ K E+E +EE+ + + E+K +E ELKRKKKK+
Sbjct: 337 GEEDEGDEEDSTAGTTKQPSKEEEEEEEEEQ-----LNQTLAEMKAQEVAELKRKKKKLL 391
Query: 343 KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLIT 388
+E+ K +E++ LKM L G + + + MF LS IR L+ +T
Sbjct: 392 REQRKQRERVELKMDLPG-VSIADEGETGMFSLSTIRGHQLLEEVT 436
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKH 248
GYRSR+AFKLIQLNR+F+FLQK++ +DLCAAPGGW+QVA + M SS+I D +K
Sbjct: 23 GYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKP 82
Query: 249 PSTTVEIQECCKDIRVLGRKDVRNLLKWWKV 279
V +Q+ R R+ +R LK WKV
Sbjct: 83 LPNVVTLQQDITTERC--RQALRKELKTWKV 111
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 480 VNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIR 539
V YRK+ EIN RPI+KV EAKARKK+R +R+++ +KK E ++ D+S+ EK +R
Sbjct: 724 VEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLR 783
Query: 540 A 540
+
Sbjct: 784 S 784
>sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus GN=Ftsj3 PE=1
SV=1
Length = 838
Score = 252 bits (643), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 167/399 (41%), Positives = 223/399 (55%), Gaps = 67/399 (16%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
EDITT++CR A+ +ELKTWKVDVVL+DG+PNVG +WV+DAY Q LTL AL+LA L
Sbjct: 91 EDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLAR 150
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GG F+TKVFRS+DY LLWIF+QLF RV +TKPQASR ESAEIFVVCQ ++AP K+D KF
Sbjct: 151 GGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQGFLAPDKVDAKF 210
Query: 122 FDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
FDPK+AFKE+ + + L K+ K KA GY LY V+ F+ P L
Sbjct: 211 FDPKFAFKEVEVQAKTVTELVTKK--KPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLS 268
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
A+E I D
Sbjct: 269 KASE----------------------------------------------------ISID 276
Query: 242 DESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEK-------- 293
DE + +HP+TT +I+ CC+DI+VLGRK++R+LL W L +K KE+ K
Sbjct: 277 DEELAQHPATTEDIRVCCQDIKVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSS 336
Query: 294 ----EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQ 349
EG E E + + +EEE+E + + + E+K +E ELKRKKKK+ +E+ K +
Sbjct: 337 EEEEEGDEEEAVAETKQAPEEEEEREEEQLNRTLAEMKAQEVAELKRKKKKLLREQRKQR 396
Query: 350 EKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLIT 388
E++ LKM L G + + + MF L IR L+ +T
Sbjct: 397 ERVELKMDLPG-VSIADEGETGMFSLRTIRGQQLLEEVT 434
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKH 248
GYRSR+AFKLIQLNR+F+FLQK++ +DLCAAPGGW+QVA + M SS+I D +K
Sbjct: 23 GYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKP 82
Query: 249 PSTTVEIQECCKDIRVLGRKDVRNLLKWWKV 279
V +QE R R+ +R LK WKV
Sbjct: 83 LPNVVTLQEDITTERC--RQALRKELKTWKV 111
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 26/155 (16%)
Query: 398 SDEEHIDIVPKK--IKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEF 455
+DE+ ++VP + +KY + LD GL SS + + D L++ F
Sbjct: 635 ADEDGFEVVPIQDPVKYRI----LDPEGLAL------GAVIASSKKAKRD----LIDNSF 680
Query: 456 D----TDEEDGLGKLLRYWEKSYNAASL------VNEYRKKRVEINVRPIRKVVEAKARK 505
+ +EE L + EK + L V YRK+ EIN RPI+KV EAKARK
Sbjct: 681 NRYAFNEEEGELPEWFAQEEKQHRIRQLPVDKKEVEHYRKRWREINARPIKKVAEAKARK 740
Query: 506 KKRQARRMDKMKKKLETLMEAPDVSDAEKARNIRA 540
K+R +++++ KKK E ++ D+S+ EK +R+
Sbjct: 741 KRRVLKKLEQTKKKAEAVVNTVDISEREKVAQLRS 775
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 168/293 (57%), Gaps = 54/293 (18%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
EDITT+KCR A+ +EL+TWKVDVVL+DG+PNVG +WV+DAY Q LTL ALKLA L +
Sbjct: 91 EDITTEKCRQALRKELQTWKVDVVLNDGAPNVGASWVHDAYSQANLTLMALKLACEFLCK 150
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GGWF+TKVFRS+DY LLWIF+Q F +V +TKPQASR ESAEIFVVCQ Y AP K+D+KF
Sbjct: 151 GGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQASRNESAEIFVVCQGYQAPDKIDSKF 210
Query: 122 FDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
FDPKYAFKE+ ++ L K+ K KA GY LY + F++ P L
Sbjct: 211 FDPKYAFKEVEVHAKSVSELVSKK--KPKAEGYADGDTTLYHRFTLMDFLKAPNPVDFLS 268
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
A E+ G
Sbjct: 269 KANEITLG---------------------------------------------------- 276
Query: 242 DESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKE 294
D + H STT E+++CCKDIRVLGRK++R LL W L T+K KE+ KE
Sbjct: 277 DGELENHSSTTEELRQCCKDIRVLGRKELRALLNWRTKLRRFLTKKLKEQAKE 329
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 4/92 (4%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKH 248
G+RSR+AFKL+QLNRKF+FLQK++ +DLCAAPGGW+QVA + M SS++ D +K
Sbjct: 23 GFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQVASKFMPVSSLVIGVDLVPIKP 82
Query: 249 PSTTVEIQECCKDIRV-LGRKDVRNLLKWWKV 279
V +QE DI R+ +R L+ WKV
Sbjct: 83 IPNVVTLQE---DITTEKCRQALRKELQTWKV 111
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 480 VNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIR 539
V EYR++ +IN RPI+KV EAKARKK+R ++M++MKKK E ++ D+S+ EK +R
Sbjct: 711 VEEYRQRWRQINARPIKKVAEAKARKKRRMLKKMEQMKKKAEAVVSTVDISEREKVAQLR 770
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 250/477 (52%), Gaps = 71/477 (14%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
EDITT++CR A+ +ELKTWKVDVVL+DG+PNVG +WV+DAY Q LTL AL+LA L
Sbjct: 91 EDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLAR 150
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GG F+TKVFRS+DY LLWIF+QLF RV +TKPQASR ESAEIFVVCQ ++AP K+D KF
Sbjct: 151 GGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQGFLAPDKVDAKF 210
Query: 122 FDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
FDPK+AFKE+ + + L K+ K KA GY LY V+ F+ P L
Sbjct: 211 FDPKFAFKEVEVQAKTVTELVTKK--KPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLS 268
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
A+E+ D
Sbjct: 269 KASEIS----------------------------------------------------ID 276
Query: 242 DESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEK-------- 293
D+ + +HP+TT +I+ CC+DI+VLGRK++R+LL W L +K KE+ K
Sbjct: 277 DKELAQHPATTEDIRACCQDIKVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSS 336
Query: 294 ---EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQE 350
E E E +EE +E + + + E+K +E ELKRKKKK+ +E+ K +E
Sbjct: 337 EEEGDEEESAAETKQASEEEEEREEEEQLNRTLAEMKAQEVAELKRKKKKLLREQRKQRE 396
Query: 351 KMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKI 410
++ LKM L G + + + MF L IR L+ +T ++ + + +P+
Sbjct: 397 RVELKMDLPG-VSIADEGETGMFSLRTIRGQQLLEEVTQGD----MNAADTFLSDLPRDD 451
Query: 411 KYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEEDGLGKLL 467
Y V +E DD + D +L + D+ + + + D+ EE+G LL
Sbjct: 452 IY-VSDAEDDDDTSLESDLDPEELAGVRTHSDQKEQKSLQFAQVDDSKEEEGENPLL 507
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKH 248
GYRSR+AFKLIQLNR+F+FLQK++ +DLCAAPGGW+QVA + M SS+I D +K
Sbjct: 23 GYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKP 82
Query: 249 PSTTVEIQECCKDIRVLGRKDVRNLLKWWKV 279
V +QE R R+ +R LK WKV
Sbjct: 83 LPNVVTLQEDITTERC--RQALRKELKTWKV 111
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 480 VNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIR 539
V YRK+ EIN RPI+KV EAKARKK+R +++++ KKK E ++ D+S+ EK +R
Sbjct: 707 VEHYRKRWREINARPIKKVAEAKARKKRRMLKKLEQTKKKAEAVVNTVDISEREKVAQLR 766
Query: 540 A 540
+
Sbjct: 767 S 767
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 245/473 (51%), Gaps = 76/473 (16%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+KCR I + LK WK D VLHDG+PNVG WV DA+ Q L L ++KLA+ L EG
Sbjct: 92 DITTEKCRATIRQHLKHWKADTVLHDGAPNVGTAWVQDAFSQAELVLQSMKLATEFLVEG 151
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTKVFRSKDY LLW+FKQLF V +TKP +SR SAEIFVVC+ + AP ++D KF
Sbjct: 152 GTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRNVSAEIFVVCRGFKAPKRIDPKFL 211
Query: 123 DPKYAFKEL-----GAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPT 177
DPK+ F EL E N KKK+ K GY +K +PV++FI P
Sbjct: 212 DPKHVFAELTDSTPNNEARVFNPEKKKR----KREGYEEGDYTQFKEIPVTEFINTTDPI 267
Query: 178 VLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSI 237
+L G ++ +F+ +PGG + +A N +
Sbjct: 268 AIL--------GTYNKLSFE---------------------QSPGGDLALATLNRLE--- 295
Query: 238 IHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGE 297
TT EI+ CC+D+++LG+K+ R+LL+W + ++ K+ + + E
Sbjct: 296 ------------ETTDEIRTCCEDLKILGKKEFRSLLRWRLKVREKFGLVVKKGQAKADE 343
Query: 298 GEEEEKVVEDEMDEE---EKELMKAT-KEIEELKDEERRELKRKKKKVSKERTKLQEKMN 353
EE +V MDEE ++EL + KE + K E R+E ++K+K++ + + + M+
Sbjct: 344 PEEVAEVA--PMDEELAIQEELQRLQEKESAKRKKERRKENEKKRKEIIRMQMHMTTPMD 401
Query: 354 LKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASK-PEVFADSDEEHIDIVPKKIKY 412
+ M LGP D+ F L ++ D+I + K E+ +DS+++ +
Sbjct: 402 IGM---EQLGP--GGDDATFSLKRVERDGARDVIASGKLAEIESDSEDDQTE-------- 448
Query: 413 NVEKSELDDSGLYYKNPDDSDLE-FESSSED-ENDVEKKLVEEEFDTDEEDGL 463
+ E DD G + DS E ++ ED ++ V K ++++ +E DG
Sbjct: 449 -SDYDESDDEGDRLERELDSLYEQYQERREDRDSKVRAKKARKDYEAEEWDGF 500
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 15/103 (14%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
KGYR+RAAFKLIQLN+K+ FL+KSKV +DLCAAPG W QVA + M SII D + +K
Sbjct: 22 KGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPTQSIIIGVDLAPIK 81
Query: 248 HPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
+ Q E C R +R LK WK VLHD
Sbjct: 82 PIPRVITFQSDITTEKC-------RATIRQHLKHWKADTVLHD 117
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
IN RPI+KV+EAK RKK + A+R++K++KK L + +S+ +K++ I
Sbjct: 686 INARPIKKVMEAKGRKKMKAAQRLEKLRKKSALLADDEALSERDKSQAI 734
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 150/408 (36%), Positives = 219/408 (53%), Gaps = 61/408 (14%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+KCR I + LKTWK D VLHDG+PNVG WV D+++Q LTL A+KLA+ L EG
Sbjct: 92 DITTEKCRATIRQHLKTWKADTVLHDGAPNVGTAWVQDSFNQAELTLQAMKLATEFLVEG 151
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTKVFRSKDY S+LW+F QLF++V +TKP +SR SAEIFVVC+ + AP ++D KF
Sbjct: 152 GTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPPSSRNVSAEIFVVCRGFKAPKRIDPKFL 211
Query: 123 DPKYAFKELGAEDGKLNALK--KKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLL 180
DP+ F EL A+ N K K +++K K GY YK LP +FI+ P +L
Sbjct: 212 DPRAVFAEL-ADPTPNNEAKVYKPEIKKRKRDGYEEGDYTQYKELPAYEFIQSTDPIAIL 270
Query: 181 QHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHF 240
G +R + ++ +K +A +++
Sbjct: 271 --------GSTNRLS-----------------------------LEQSKNGDVALAVLE- 292
Query: 241 DDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHD------EKTEKEKEEEKE 294
K P TT EI+ CC D++VLGRK+ + LLKW + + +K+ K++EE
Sbjct: 293 ------KLPETTDEIRTCCADLKVLGRKEFKLLLKWRLAVREKLGFPTKKSVKKEEEAAA 346
Query: 295 GGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNL 354
EE +E MDEE M+ E+E+LK+ + KR+++K ++ + K +M +
Sbjct: 347 AVAAAEEVAKIE-SMDEE----MRIQHELEKLKERNSTKKKRERRKENERKQKDIVRMQM 401
Query: 355 KMLLKGDLGPTENDDE---EMFKLSQIRTTDQLDLITASKPEVFADSD 399
M+ D+G + E MF L + D + + K V +++D
Sbjct: 402 HMVAPMDIGVEQAGPEGEDAMFALRAVEKGDVMRRLAKGKMVVASEAD 449
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 15/103 (14%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
KGYR+RAAFKLIQLN+K+ FL+KSKV +DLCAAPG W QVA + M SS+I D + +K
Sbjct: 22 KGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMPVSSLIVGVDLAPIK 81
Query: 248 HPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
+ Q E C R +R LK WK VLHD
Sbjct: 82 PIPKVITFQSDITTEKC-------RATIRQHLKTWKADTVLHD 117
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
N RPI+KV EAK RKK + A+R++K+KKK + L+ +++ EKA +I
Sbjct: 753 FNARPIKKVREAKGRKKMKAAQRLEKLKKKSDLLVNEEGMTEKEKAESI 801
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 222 bits (566), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 197/374 (52%), Gaps = 58/374 (15%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
+DITT+KCR I LK WK D VLHDG+PNVG WV DA+ Q L L +LKLA+ L E
Sbjct: 91 QDITTEKCRATIRSHLKHWKADTVLHDGAPNVGTAWVQDAFSQAELVLESLKLATEFLVE 150
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GG FVTKVFRSKDY LLW+FKQLF V +TKP +SR SAEIFVVC+ Y AP ++D KF
Sbjct: 151 GGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPPSSRNVSAEIFVVCRGYKAPKRIDPKF 210
Query: 122 FDPKYAFKELG-----AEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETP 176
D K+ F EL E N KKK+ K GY +K +PV++FI P
Sbjct: 211 LDSKHVFAELADPTPNNEAKVFNPEKKKR----KREGYEEGDWTQFKEIPVTEFINTTDP 266
Query: 177 TVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS 236
+L K F Q+ PGG + +A + +
Sbjct: 267 IAILGSCN-------------------KLSFQQQ----------PGGDLALATLDRL--- 294
Query: 237 IIHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGG 296
P TT EI+ CC+D++VLG+K+ RNLL+W + ++ K+ + +
Sbjct: 295 ------------PETTDEIRNCCEDLKVLGKKEFRNLLRWRLKVREKFGLVVKKGQAKDD 342
Query: 297 EGEEEEKV--VEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNL 354
E EE ++ ++DE+ +E+ L KE K E R+E +RK+K++ + + + M++
Sbjct: 343 EAEEVAEIAPMDDELAIQEELLRLKEKESARSKKERRKENERKRKEIVRMQMHMTTPMDI 402
Query: 355 KMLLKGDLGPTEND 368
M LGP D
Sbjct: 403 GM---EQLGPGGED 413
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
KGYR+RAAFKL+QLN+K+ FL+KSKV +DLCAAPG W QVA + M A S+I D + +K
Sbjct: 22 KGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPAQSLIVGVDLAPIK 81
Query: 248 HPSTTVEIQECCKDIRV-LGRKDVRNLLKWWK---VLHD 282
+ Q+ DI R +R+ LK WK VLHD
Sbjct: 82 PIPRVITFQQ---DITTEKCRATIRSHLKHWKADTVLHD 117
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 476 AASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKA 535
AA++ ++R IN RPI+KV+EAK RKK + A+R++K++KK L + +S+ +KA
Sbjct: 686 AAAIQEKWR----AINARPIKKVMEAKGRKKFKAAQRIEKLRKKSALLADDETMSERDKA 741
Query: 536 RNI 538
+ I
Sbjct: 742 QAI 744
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 207/401 (51%), Gaps = 55/401 (13%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+KCR I LKTWK DVVLHDG+PNVG WV D+Y+Q L L +LKLA+ L EG
Sbjct: 92 DITTEKCRATIRSHLKTWKADVVLHDGAPNVGTAWVQDSYNQAELALHSLKLATEFLIEG 151
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTKVFRSKDY SLLW+ QLF +V +TKP +SR SAEIFVVC+ + AP ++D K
Sbjct: 152 GTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRNVSAEIFVVCRGFKAPKRIDPKLL 211
Query: 123 DPKYAFKEL-GAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
DP+ F+++ G + +V+K K GY +K + S+FI P +L
Sbjct: 212 DPRSVFEDVAGPAPNNEAKVYNPEVKKRKREGYEEGDYTQFKEISASEFINTVDPIAILG 271
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
Q N K F Q V L A
Sbjct: 272 ------------------QYN-KLSFEQPKNGDVALAA---------------------- 290
Query: 242 DESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEE 301
+ K P TT EI+ CC D++VLGRK+ + LLKW + + K+ +K +E
Sbjct: 291 ---LDKLPETTEEIRLCCADLKVLGRKEFKLLLKWRLKVREIFGFPSKKTQK---AAVDE 344
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGD 361
E V + MDEE ++ +E++ +K++E + KR++++ ++++ K +M + M D
Sbjct: 345 EVAVVENMDEE----LRIQEELQRIKEKETSKKKRERRRENEKKQKEIVRMQMNMTAPMD 400
Query: 362 LGPTE---NDDEEMFKLSQIRTTDQLDLITASKPEVFADSD 399
+G + + MF+L I L+ I K V +++
Sbjct: 401 IGVEQEGPRGEGAMFRLKTIDQNAALNKIAKGKMAVIKETE 441
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 15/103 (14%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
KGYR+RAAFKLIQLN+K+ FL+KSKV +DLCAAPG W QV + M +SII D + +K
Sbjct: 22 KGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMPTNSIIIGVDLAPIK 81
Query: 248 HPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
+ Q E C R +R+ LK WK VLHD
Sbjct: 82 PIPKVITFQSDITTEKC-------RATIRSHLKTWKADVVLHD 117
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 491 NVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
N RPI+KV EAKARKK +QA+R++K+KKK + L +S+ EKA +I
Sbjct: 724 NARPIKKVAEAKARKKFKQAQRLEKLKKKADMLAGDDGMSEKEKAASI 771
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/280 (42%), Positives = 160/280 (57%), Gaps = 55/280 (19%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
EDITT KCR I + LKTWKVDV LHDG+PN+G +WV DAY Q LTL ALKLA+ L
Sbjct: 92 EDITTQKCRTEIKKALKTWKVDVCLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTT 151
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GGWFVTKVFR DY SL+W+F +LF++V STKP +SR SAEIFVVCQ ++ P ++D K
Sbjct: 152 GGWFVTKVFRGSDYNSLIWVFNKLFKKVESTKPPSSRNASAEIFVVCQGFLNPKRIDPKL 211
Query: 122 FDPKYAFKELGAEDGKLNAL-KKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLL 180
DPK+ FKE+ E K++ L +KK+V ++ GY V VLYK +S F+
Sbjct: 212 LDPKFVFKEI-QEVKKVDVLSEKKKVNRA---GYEDGVTVLYKKGFISDFVNSN------ 261
Query: 181 QHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHF 240
+H ++ A F FEF + +K+ F
Sbjct: 262 EHLQDL-------ANF------NAFEFDEAAKI--------------------------F 282
Query: 241 DDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVL 280
+ +H TT EI+E KD++VL + D + ++KW K +
Sbjct: 283 E-----QHELTTPEIKELVKDLKVLNKNDFQKIIKWKKAM 317
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
+GYRSRAAFKLIQLN+K+ FL +K C+DLCAAPGGWMQVA + M S+I D ++
Sbjct: 23 QGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASKYMPVQSLIVGVDLVPIR 82
Query: 248 HPSTTVEIQECCKDIRVLGRKDVRNLLKWWKV---LHD 282
+ + E + R +++ LK WKV LHD
Sbjct: 83 QVRNCIGLTEDITTQKC--RTEIKKALKTWKVDVCLHD 118
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 192/367 (52%), Gaps = 63/367 (17%)
Query: 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILK 60
+EDIT+DKCR + LKTWK DVVLHDG+PNVG W+ DAY Q L L ++KLA L
Sbjct: 91 VEDITSDKCRSQLRGYLKTWKADVVLHDGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLV 150
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTK 120
GG FVTKVFRS+DY +LLW+FKQLF +V +TKP +SR SAEIFVVC+ Y AP KLD +
Sbjct: 151 AGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPR 210
Query: 121 FFDPKYAFKELGAEDGKLNA-LKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVL 179
F DP+ F+E+ ++A + + K GY D L+K + S+F+ P +
Sbjct: 211 FTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREGYADDDYTLHKTVLASEFVTANDPIQI 270
Query: 180 LQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIH 239
L + E+ +
Sbjct: 271 LGTSAEI--------------------------------------------------VFP 280
Query: 240 FDDESVLKHPSTTVEIQE---CCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGG 296
DDE + + V +E CC D++VLG+K+ R++L+W + DE +K E
Sbjct: 281 KDDEECQRLYNLDVTTEEILLCCSDLQVLGKKEFRDILRWRLKIRDEMGIGKKVE----- 335
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKM 356
+E++ VV E E E + +E+++L + ER +LKR+++K ++ + + +M + M
Sbjct: 336 --DEQKTVV--EEIPEMDEEERLDQELQDLSEAERVKLKRERRKANQRKQREIVRMQMGM 391
Query: 357 LLKGDLG 363
L D+G
Sbjct: 392 LAPMDIG 398
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
+GYRSRAAFKL+QLN+K+ FL+K+KV +DLCAAPGGW+QVA + S+I D + +K
Sbjct: 23 QGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKTCKPGSLIVGVDLAPIK 82
Query: 248 H-PSTTVEIQECCKDIRVLGRKDVRNLLKWWK---VLHD 282
P+ +++ D R +R LK WK VLHD
Sbjct: 83 PIPNCHTFVEDITSD---KCRSQLRGYLKTWKADVVLHD 118
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 40/55 (72%)
Query: 484 RKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
R+K +N RPI+KV+EA+ RKK R +R+ ++ KK E + E+ D++++EKA+ I
Sbjct: 686 REKMKALNARPIKKVLEAQGRKKMRTIKRLQRVAKKAEGISESGDMTESEKAKEI 740
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 205/403 (50%), Gaps = 67/403 (16%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+ CR + +KTWK D VLHDG+PNVG+NWV DA+ Q LTL ALKLA L G
Sbjct: 94 DITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVG 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTK+FRSKDY L+W+F+QLF +V +TKP ASR SAEIFVVC+ + AP KLD +
Sbjct: 154 GTFVTKIFRSKDYNKLMWVFQQLFDKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLL 213
Query: 123 DPKYAFKELGAEDGKLNALKK---KQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVL 179
DPK F+EL DG N K + + K GY +LY +P+ F++ E P +
Sbjct: 214 DPKEVFEEL--PDGPQNMQAKVYNPEKKTRKRDGYEEGDYLLYHTVPIMDFVKVEDPIQM 271
Query: 180 LQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIH 239
L + F L + + +++ ++K K
Sbjct: 272 LGTTNK----------FTLDKDDHEWKIVKKLK--------------------------- 294
Query: 240 FDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGE 299
TT E + C +D++VLG+KD + LL+W K E G + +
Sbjct: 295 ----------QTTPEFKACIEDLKVLGKKDFKMLLRWRKAAR----------ELLGLDKD 334
Query: 300 EEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLK 359
EE+ +E EE+++ KE++E++ ++ + KR+K+K ++ + K +M ++M+
Sbjct: 335 EEQPEIETVPLTEEEQI---EKELQEMQQKQNLKKKREKRKQNEIKQKEITRMQMQMITP 391
Query: 360 GDLG--PTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDE 400
DLG + +F L T LD + K + DE
Sbjct: 392 TDLGIEAASIGRDSLFNLKTAEKTGILDDLARGKKRMVFTRDE 434
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N KF FL+KSKV +DLCAAPG W QVA +S+I D +
Sbjct: 23 KGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASNLCPVNSLIIGVDIVPM 82
Query: 247 KHPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
+ + Q E C R +R +K WK VLHD
Sbjct: 83 QPMPNVITFQSDITTEDC-------RSKLRGYMKTWKADTVLHD 119
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
+N RPI+KV EAKARKK R R++K+KKK + + D S+ +KA I
Sbjct: 715 LNARPIKKVAEAKARKKMRALNRLEKLKKKAGLINDDSDKSEKDKAEEI 763
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 217/403 (53%), Gaps = 66/403 (16%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+ CR + +KTWK D VLHDG+PNVG+ WV DA+ Q LTL ALKLA L G
Sbjct: 94 DITTEDCRSQLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTG 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTK+FRS+DY +L+W+F+QLF++V +TKP ASR SAEIFVVC+ Y +P K+D +
Sbjct: 154 GTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGYKSPKKMDPRLL 213
Query: 123 DPKYAFKEL--GAEDGKLNALK-KKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVL 179
DP+ F+EL G ++ + +K+V + + GY L+ +P+ +FI++E P
Sbjct: 214 DPREVFEELPTGPDNNEAKIFNPEKKVRRRQ--GYEEGDYTLFHEMPLLEFIKNEDPINT 271
Query: 180 LQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIH 239
L ++ + Q + +++ L+KSK+C
Sbjct: 272 LGTLNKLSEPP---------QDDHEWKILKKSKLC------------------------- 297
Query: 240 FDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGE 299
T E+ EC KD++VLGRKD ++LLK+ K D KEE +E
Sbjct: 298 ------------TPELLECIKDLKVLGRKDFKHLLKFRKQARDLLGLDAKEETQEI---- 341
Query: 300 EEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLK 359
E E + ED+ E KE++EL ++++++ ++ KK+ ++ + K ++ + ML
Sbjct: 342 EVEPLTEDQQIE---------KELQELTEKQKQKARKAKKQSNEIKQKEIQRSQMNMLTD 392
Query: 360 GDLG--PTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDE 400
++G + E +F L T QL+ ++ K ++ + +E
Sbjct: 393 MNIGIEAAQIGAESLFNLKTAIKTGQLEKLSKGKKKMIFNDEE 435
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N K+ FL+KSKV +DLCAAPG W QVA Q +S+I D +
Sbjct: 23 KGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPINSLIIGVDIVPI 82
Query: 247 KHPSTTVEIQECCKDIRVLG-RKDVRNLLKWWK---VLHD 282
K + Q DI R +R +K WK VLHD
Sbjct: 83 KALPNCITFQ---SDITTEDCRSQLRGHMKTWKADTVLHD 119
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 208/403 (51%), Gaps = 71/403 (17%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+ CR + +KTWK D VLHDG+PNVG+ WV DA+ Q LTL ALKLA L
Sbjct: 94 DITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVN 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTK+FRSKDY L+W+F+QLF++V +TKP ASR SAEIFVVC+ + AP +LD +
Sbjct: 154 GTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLL 213
Query: 123 DPKYAFKELGAEDGKLNALKK-----KQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPT 177
DPK F+EL DG+ N K K+V K + GY N+LY + F+ E P
Sbjct: 214 DPKEVFEEL--PDGQQNMESKIYNPEKKVRKRQ--GYEEGDNLLYHETSILDFVRTEDPI 269
Query: 178 VLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSI 237
+L + F + + + +++ L+K K
Sbjct: 270 SMLGEMNK----------FTIDENDHEWKILKKLK------------------------- 294
Query: 238 IHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGE 297
TT E + C +D++VLG+KD + +L+W K+ + + K++ K
Sbjct: 295 ------------QTTDEFRSCIEDLKVLGKKDFKMILRWRKIAREILGIEVKDDAK---- 338
Query: 298 GEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKML 357
E +VV + EEE + K+++ L++++R +KR++++ ++ + K ++M + M+
Sbjct: 339 --TEIEVV--PLTEEE----QIEKDLQGLQEKQRLNVKRERRRKNEMKQKELQRMQMNMI 390
Query: 358 LKGDLG--PTENDDEEMFKLSQIRTTDQL-DLITASKPEVFAD 397
D+G E +F L T L DL K +F D
Sbjct: 391 TPTDIGIEAASLGKESLFNLKTAEKTGILNDLAKGKKRMIFTD 433
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 16/104 (15%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N K+ FL+KSKV +DLCAAPG W QVA + +S+I D +
Sbjct: 23 KGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASKLCPVNSLIIGVDIVPM 82
Query: 247 KHPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
K + Q E C R +R +K WK VLHD
Sbjct: 83 KPMPNVITFQSDITTEDC-------RSKLRGYMKTWKADTVLHD 119
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
+N RPI+KV EAKARK+ R R++K+KKK + + D ++ +KA I
Sbjct: 728 MNARPIKKVAEAKARKRMRAVARLEKIKKKAGLINDDSDKTEKDKAEEI 776
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 212/416 (50%), Gaps = 59/416 (14%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+ CR + +KTWK D VLHDG+PNVG+ WV DA+ Q LTL ALKLA L G
Sbjct: 94 DITTEDCRSRLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAG 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTK+FRS+DY +L+W+F+QLF++V +TKP ASR SAEIFVVC+ + AP KLD +
Sbjct: 154 GTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLL 213
Query: 123 DPKYAFKELGA--EDGKLNALKKKQVEKSKA----LGYPSDVNVLYKNLPVSKFIEHETP 176
DPK F+ELG E + N K EK + GY L+ +P+ FI+ + P
Sbjct: 214 DPKEVFEELGGGNESKQNNEAKIFNPEKFSSQRQRQGYQEGDYTLFHTMPIMDFIKQDDP 273
Query: 177 TVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS 236
L + + +++ L K K+C
Sbjct: 274 INQLGSLNKFDLPAPKDDDNDDDDHDHEWKILSKLKLC---------------------- 311
Query: 237 IIHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGG 296
T E+ EC KD++VLGRK+ + +LK+ K D + E+E+E
Sbjct: 312 ---------------TPELLECIKDLKVLGRKEFKMILKFRKQARDILGIDKDEKEEE-- 354
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS--KERTKLQEKMNL 354
EE K+ + + EE+ K +E+++L ++++++ KR KK + K++ ++ +MN+
Sbjct: 355 --EENPKIEVEPLTEEQ----KIDQELQDLINKQKQKAKRLKKNANELKQKEIIRNQMNM 408
Query: 355 KMLLKGDLGPTENDDEEMFKLSQIRTTDQLD-LITASKPEVFAD-----SDEEHID 404
+ + + + +F L T QLD L K +F D +E HID
Sbjct: 409 LTDMNIGIEAAQIGADSLFNLKTAEKTGQLDKLAKGKKKMIFNDEELAKDNEIHID 464
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 16/104 (15%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N K+ FL+KSKV +DLCAAPG W QVA Q +S+I D +
Sbjct: 23 KGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQLCPINSLIIGVDIVPI 82
Query: 247 KHPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
K + Q E C R +R +K WK VLHD
Sbjct: 83 KPLPNVITFQSDITTEDC-------RSRLRGHMKTWKADTVLHD 119
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 484 RKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
++K+ ++N RPI+KV+EA++RKK R +R++K+KKK + + E S+ +KA I
Sbjct: 728 KEKQKQLNARPIKKVLEAQSRKKLRALKRLEKIKKKSDLINEDSGKSERDKADEI 782
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 199/404 (49%), Gaps = 86/404 (21%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
EDI + KCR + + LK WK D+V+HDG+PNVG WV DAY Q LTL +L+LA L
Sbjct: 93 EDINSYKCRDQLRQILKDWKADIVIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTA 152
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
GG FVTKVFRSKDY +LLW+F QLF++V +TKP +SR SAEIFVVCQ Y PA++D KF
Sbjct: 153 GGTFVTKVFRSKDYNNLLWVFNQLFKKVEATKPSSSRNVSAEIFVVCQGYKNPARIDPKF 212
Query: 122 FDPKYAFKEL---------------------GAEDGKLNALKKKQVEKSKALGYPSDVNV 160
DP++ FKEL A + N + K++ +++ GY
Sbjct: 213 LDPRHVFKELDPASLADQDQEAGVPLSLKGTSAGNAHANVFEPKKIRRNRE-GYADGDYT 271
Query: 161 LYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAA 220
L+ +L FI+ + D+
Sbjct: 272 LFHSLDAMDFIKGQ-----------------------------------------DVIGM 290
Query: 221 PGGWMQVAKQNMMASSIIHFDDES--VLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWK 278
G + Q++ ++ DES +L P T E++E C D++VLG+KD RNL+ W K
Sbjct: 291 LGSYNQISFES----------DESKKLLSLPDTNDEMRENCSDLKVLGKKDFRNLMNWRK 340
Query: 279 VLH-----DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRE 333
+ D K ++ ++ E EE +D++D+E L + + + E
Sbjct: 341 EVRLALGIDLPKSKHQDLAEQTQTVEVEEMDEDDQIDDELARLNEEAARKARKERRRKNE 400
Query: 334 LKRKKKKVSKERTKLQEKMNLKM-LLKGDLGPTENDDEEMFKLS 376
L ++KK+ K + ++ M++ M ++ LG D MF++S
Sbjct: 401 L--RQKKILKMQLQMTTPMDIGMDVMDDQLGAGNGD---MFEIS 439
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLK 247
+GYRSRAAFKL+QLN+KF FL+K++ C+DLCAAPGGW+QVA + M A+S+I D +K
Sbjct: 24 QGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASKFMPANSLIVGVDLVPIK 83
Query: 248 HPSTTVEIQECCKDIRVLGRKDVRNLLKWWK---VLHD 282
T+ E + R +R +LK WK V+HD
Sbjct: 84 PIPRTITFAEDINSYKC--RDQLRQILKDWKADIVIHD 119
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 480 VNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
+ R+++ ++ RPI+KV EAKARKK R RR++K +KK ET+ E D+S+ EK+ I
Sbjct: 781 IQALRERQRALDARPIKKVAEAKARKKMRTLRRLEKAQKKAETINENEDISEKEKSNTI 839
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 212/408 (51%), Gaps = 32/408 (7%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITTD CR + + +KTWK D V+HDG+PNVGM W DA+ Q L L +LKLA L +G
Sbjct: 94 DITTDHCRQQLRQYMKTWKADTVMHDGAPNVGMAWAQDAFTQSELVLQSLKLAVEFLNKG 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTKVFRSKDY +L+W+F+Q F++V +TKP +SR SAEIFVVC + AP K+D +
Sbjct: 154 GTFVTKVFRSKDYNNLMWVFQQFFEKVEATKPPSSRNVSAEIFVVCLKFKAPKKIDPRLL 213
Query: 123 DPKYAFKELGAEDGKLNA-LKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQ 181
D KY F+E+ + A + +V++ K GY + +K L + FI TP L
Sbjct: 214 DAKYVFEEVSQGNNNNEAKVFNPEVKRRKREGYEEGEYLQHKRLSILDFITDSTPIDNLG 273
Query: 182 HATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
E+ RS + ++ K G +Q + + +
Sbjct: 274 ETNEMTWTPRS--------IKEGEVDEEEEKEKDKEARDERGNVQYVLDDKV------YS 319
Query: 242 DESVLKH----PSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGE 297
DE LK P TT E+ EC KD++VLGRK+ R +LK W++ + + +K E G E
Sbjct: 320 DEDALKMVSKLPQTTPELLECLKDLKVLGRKEFRAILK-WRLSARDLLQIDKPE--AGVE 376
Query: 298 GEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKML 357
EEEE + +D+E EL + K ++ + R E+K+++ ++M + M
Sbjct: 377 VEEEELDEDQLIDKELSELGEREKARKKRERRRRNEMKQRE----------IQRMQMNMT 426
Query: 358 LKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDI 405
+LG E +F L Q T +L + K +++ +EH+ +
Sbjct: 427 TPTELGIEAAKMESLFNLKQAERTGKLSELQKGKRSHVSETGDEHVTL 474
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 8/100 (8%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N+K+ +FL+KSKV +DLCAAPG W QVA Q +S+I D +
Sbjct: 23 KGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVASQLCPVNSLIIGCDIVPI 82
Query: 247 KHPSTTVEIQECCKDIRV-LGRKDVRNLLKWWK---VLHD 282
K + Q DI R+ +R +K WK V+HD
Sbjct: 83 KPLPNVITFQS---DITTDHCRQQLRQYMKTWKADTVMHD 119
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 410 IKYNVEKSELDDSGLYYKNPDDSDLEF---ESSSEDENDVE------------------- 447
++Y+ + E DD + + DDSD+E+ ES S+DE +++
Sbjct: 625 LEYSDSEDEEDDIVMETQKQDDSDIEYVHGESDSDDEPNIDLVTDQAMTMAHQLATGQTN 684
Query: 448 -KKLVEEEFDT---DEEDGLGKLLRYWEKSYNAAS------LVNEYRKKRVEINVRPIRK 497
KL ++ ++ + DGL + + E +N + V ++K +N RPI+K
Sbjct: 685 KHKLQDDGYNRYSFRDLDGLPQWFQDDENKHNKLNKPITKEAVEALKQKMKTLNARPIKK 744
Query: 498 VVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
V+EAK RKK R RR+++MKKK E + E S+ EKA +I
Sbjct: 745 VLEAKGRKKMRALRRLEQMKKKSELINEDGARSEKEKADDI 785
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 237/482 (49%), Gaps = 90/482 (18%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+ CR + +KTWK D VLHDG+PNVG+ W DA+ Q LTL ALKLA L
Sbjct: 94 DITTEDCRSRLRGYMKTWKADTVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVN 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTK+FRSKDY L+W+F+QLF++V +TKP ASR SAEIFVVC+ + AP KLD +
Sbjct: 154 GTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLL 213
Query: 123 DPKYAFKELGAEDGKLNALKK-----KQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPT 177
DPK F+EL DG N K K+V K + GY ++LY V F++ E P
Sbjct: 214 DPKEVFEEL--PDGPQNMEAKIYNPEKKVRKRQ--GYEEGDHLLYHECSVLDFVKSEDPI 269
Query: 178 VLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSI 237
+L + F + Q + +++ L++ K
Sbjct: 270 TVLGEMNK----------FTVEQDDPEWKILKRLK------------------------- 294
Query: 238 IHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGE 297
TT E C +D++VLG+KD + LLKW K D G +
Sbjct: 295 ------------QTTNEFMACIEDLKVLGKKDFKMLLKWRKASRD----------ILGLD 332
Query: 298 GEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKML 357
+E++ +E E EE+++ KE+ +L+++++++ KR+K++ ++E+ K +M + ML
Sbjct: 333 KDEDKGDIEIEPLNEEEQI---EKELRDLQEKQKQKQKREKRRKNEEKQKELTRMQMNML 389
Query: 358 LKGDLG--PTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDE------EHID--IVP 407
D+G + +F L T LD + K V DE HID IV
Sbjct: 390 TPTDIGIEAANIGRDSLFNLKTAEKTGILDKLAKGKKRVIFTEDEIAQDNDLHIDENIV- 448
Query: 408 KKIKYNVEKSELDD-----SGLY--YKN-PDDSDLEFESSSEDENDVEKKLVEEEFDTDE 459
I+ + +E+DD + +Y YKN + D F + DVE + E D
Sbjct: 449 --IRDRHDMNEVDDLEGELNAMYQDYKNRKAERDANFRAKQARGGDVEDEWTGFEGTKDS 506
Query: 460 ED 461
ED
Sbjct: 507 ED 508
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 16/104 (15%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N KF FL+KSKV +DLCAAPG W QVA + +S+I D +
Sbjct: 23 KGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASKLCPVNSLIIGVDIVPM 82
Query: 247 KHPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
K + Q E C R +R +K WK VLHD
Sbjct: 83 KPMPNVITFQSDITTEDC-------RSRLRGYMKTWKADTVLHD 119
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
+N RPI+KV EA+ARKK R +R++K+KKK + + D S+ +KA I
Sbjct: 723 LNARPIKKVAEARARKKMRAVKRLEKIKKKAGLINDDSDKSEKDKAEEI 771
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 117/183 (63%), Gaps = 9/183 (4%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DITT+ CR + +KTWK D VLHDG+PNVG++W DA+ Q LTL ALKLA L G
Sbjct: 95 DITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLSWAQDAFTQSHLTLQALKLAVENLVVG 154
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FVTK+FRSKDY L+W+F+QLF++V +TKP ASR SAEIFVVC+++ AP KLD +
Sbjct: 155 GTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKNFKAPKKLDPRLL 214
Query: 123 DPKYAFKELGAEDGKLNALKK-----KQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPT 177
DPK F+EL DG N K K+V K GY +LY + F++ E P
Sbjct: 215 DPKEVFEEL--PDGPQNMEAKVFNPEKKVRKRG--GYEEGDYLLYHETGLMDFMKSEDPI 270
Query: 178 VLL 180
+L
Sbjct: 271 TML 273
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Query: 188 KGYRSRAAFKLIQLNRKF-EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246
KGYR+R++FK+IQ+N K+ FL+KSKV +DLCAAPG W QVA +S+I D +
Sbjct: 24 KGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASNLCPVNSLIIGVDIVPM 83
Query: 247 KHPSTTVEIQ-----ECCKDIRVLGRKDVRNLLKWWK---VLHD 282
K + Q E C R +R +K WK VLHD
Sbjct: 84 KTMPNVITFQSDITTEDC-------RSKLRGYMKTWKADTVLHD 120
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
+N RPI+KV EAKARKK R R++K+KKK + + D S+ +KA I
Sbjct: 721 LNARPIKKVAEAKARKKHRAVARLEKLKKKAGLINDDSDKSEKDKAEEI 769
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 200/417 (47%), Gaps = 102/417 (24%)
Query: 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILK 60
+ DITT CR + + + WK D+VLHDG+PNVG WV DA+ Q L L +LKLA+ L
Sbjct: 91 VADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLA 150
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTK 120
+GG FVTKVFRS+DY SLLW+F QLF+ V +TKP +SR SAEIFVVC+ +IAP +D K
Sbjct: 151 KGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPK 210
Query: 121 FFDPKYAFKELGA-----------------------------------EDGKLNALKKKQ 145
F DPK+ FK++ + + A +KK+
Sbjct: 211 FLDPKHVFKDIASLPTSITEPTDTSIAPTSSSTASAAAAAARLAANSHAHSNVYAPEKKR 270
Query: 146 VEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKF 205
+ GY L+ +F+ + P +LL + K
Sbjct: 271 RHRE---GYAEGDYTLHHTASAEEFVRGQDPVLLLGNMN-------------------KI 308
Query: 206 EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKHPSTTVEIQECCKDIRVL 265
EF +++ GW++ ++ I +F+D VL
Sbjct: 309 EFRNETE---------KGWLK--SRHTTPDIIANFEDLKVL------------------- 338
Query: 266 GRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE 325
G+ D + L+KW + E K ++ + + E+VV + MDEEE + T+E+++
Sbjct: 339 GKGDFKALMKWRLAIRLEIGLDVKADKTQ----DATEEVVVEPMDEEE----QITEELQK 390
Query: 326 LKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTEND-----DEEMFKLSQ 377
L+ + + KR++K+ ++++ + K+ L M + DL +ND +EE+F L +
Sbjct: 391 LQQAKLAKTKRERKRANEKKARELLKLQLNMTVPDDL--DQNDLALQGEEEIFDLEE 445
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESVL 246
+GYR+R+AFKL+ LNRK++ L K++ C+DLCAAPGGW+QVA++ M S II D ++
Sbjct: 23 QGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMPKGSLIIGVDLNAIK 82
Query: 247 KHPSTTVEIQECCKDIRVLGRKDVRNLLKWWK---VLHD 282
P T + + R+ +R + WK VLHD
Sbjct: 83 PLPHVTTFVADITTP---HCRQTLRQHMHDWKADLVLHD 118
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 480 VNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIR 539
V+ R ++ ++ RPI+KV EAK RKK + RM+K KKK + +ME+ ++ D EKAR +R
Sbjct: 785 VDALRARQRALDARPIKKVAEAKGRKKMKAVARMEKAKKKADGVMESEEMGDGEKARQVR 844
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 200/417 (47%), Gaps = 102/417 (24%)
Query: 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILK 60
+ DITT CR + + + WK D+VLHDG+PNVG WV DA+ Q L L +LKLA+ L
Sbjct: 91 VADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLA 150
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTK 120
+GG FVTKVFRS+DY SLLW+F QLF+ V +TKP +SR SAEIFVVC+ +IAP +D K
Sbjct: 151 KGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPK 210
Query: 121 FFDPKYAFKELGA-----------------------------------EDGKLNALKKKQ 145
F DPK+ FK++ + + A +KK+
Sbjct: 211 FLDPKHVFKDIASLPTSITEPTDTSIAPTSSSTASAAAAAARLAANSHAHSNVYAPEKKR 270
Query: 146 VEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKF 205
+ GY L+ +F+ + P +LL + K
Sbjct: 271 RHRE---GYAEGDYTLHHTASAEEFVRGQDPVLLLGNMN-------------------KI 308
Query: 206 EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKHPSTTVEIQECCKDIRVL 265
EF +++ GW++ ++ I +F+D VL
Sbjct: 309 EFRNETE---------KGWLK--SRHTTPDIIANFEDLKVL------------------- 338
Query: 266 GRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE 325
G+ D + L+KW + E K ++ + + E+VV + MDEEE + T+E+++
Sbjct: 339 GKGDFKALMKWRLAIRLEIGLDVKADKTQ----DATEEVVVEPMDEEE----QITEELQK 390
Query: 326 LKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTEND-----DEEMFKLSQ 377
L+ + + KR++K+ ++++ + K+ L M + DL +ND +EE+F L +
Sbjct: 391 LQQAKLAKTKRERKRANEKKARELLKLQLNMTVPDDL--DQNDLALQGEEEIFDLEE 445
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESVL 246
+GYR+R+AFKL+ LNRK++ L K++ C+DLCAAPGGW+QVA++ M S II D ++
Sbjct: 23 QGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKYMPKGSLIIGVDLNAIK 82
Query: 247 KHPSTTVEIQECCKDIRVLGRKDVRNLLKWWK---VLHD 282
P T + + R+ +R + WK VLHD
Sbjct: 83 PLPHVTTFVADITTP---HCRQTLRQHMHDWKADLVLHD 118
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 480 VNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIR 539
V+ R ++ ++ RPI+KV EAK RKK + RM+K KKK + +ME+ ++ D EKAR +R
Sbjct: 785 VDALRARQRALDARPIKKVAEAKGRKKMKAVARMEKAKKKADGVMESEEMGDGEKARQVR 844
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 6/94 (6%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK---DYTS 77
KVDVV+ D SPN+ W D L AL++A+ +LKE G FV KVF DY +
Sbjct: 116 KVDVVISDASPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVN 175
Query: 78 LLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
L+ K+ F++V+ TKPQASRKESAE++V+ + Y
Sbjct: 176 LV---KKYFEKVYITKPQASRKESAEVYVIAKRY 206
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQ 230
YRSRA+FKL+QLN KF ++ K+ +DL APGGWMQVA++
Sbjct: 26 YRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVARE 66
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT+ + + K D+V+ DG+P+V D + Q L L A + S +LKEG
Sbjct: 92 DITSVDTANQVIKHFSGEKSDIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEG 151
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114
G F+ K+FRS++ + L K+ F++V+ KP++SR+ S E FV+C Y P
Sbjct: 152 GNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSRQSSCEAFVLCLDYSPP 203
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNM 232
+R+R+AFKL+Q++ +F+ L+ + VDLCAAPG W QV + +
Sbjct: 21 WRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRL 63
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNV-GMNWVYDAYHQCCLTLGALKLASGILKE 61
DIT I + K D+V+ DG+P+V G++ V D Y Q L L AL +A+ +LK
Sbjct: 91 DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDV-DEYMQAQLLLAALNIATHVLKP 149
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114
GG FV K+FR +D T L + F V KP++SR S E F VCQ Y P
Sbjct: 150 GGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPP 202
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS---IIHFDDES 244
G+R+R+AFKL+QL+++F+ Q VDLCAAPG W QV Q + ++ D ++
Sbjct: 19 NGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQA 78
Query: 245 VLKHPSTTVEIQ 256
+ P V+IQ
Sbjct: 79 MAPLPG-VVQIQ 89
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DI D I R + DVVL D +PN+ NW YD LT AL+ A ILK
Sbjct: 84 DINADSTIKKIIRAVGEKGADVVLCDAAPNLSGNWSYDHARSIELTTSALECAKKILKPK 143
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYI-APAKLDTKF 121
G FV KVF+ + L + F V + PQASR +SAEI+V+ + ++ AP + KF
Sbjct: 144 GNFVVKVFQGDMFNDYLEKVRDNFVHVKAYSPQASRSQSAEIYVIGKKFLTAPLRRGDKF 203
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQ 230
GYRSRA+FKL Q+N K +++ VDL AAPGGW+QVAKQ
Sbjct: 17 GYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQ 58
>sp|A6USA0|RLME_METVS Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rlmE
PE=3 SV=1
Length = 259
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80
K DV++ D SPN+ W D LT AL A+ +LK+GG FV KVF+ + +
Sbjct: 113 KPDVIICDASPNISGVWDVDHTRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFYKYVE 172
Query: 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
+ + F + +TKP+ASR+ESAE++V+ +HY
Sbjct: 173 LVSEYFDKAFTTKPRASREESAEVYVIAKHY 203
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAK 229
K YRSRA +KL QLN KF +++ V VDL APGGW+Q A+
Sbjct: 24 KNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQAAR 65
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT I D+V+ DG+P+V D Y Q + L A LA +LK G
Sbjct: 99 DITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPG 158
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FV K+FR +D + L + +F++V KP++SR S E FVVC+ + P+
Sbjct: 159 GKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQPDLT 218
Query: 123 DP 124
P
Sbjct: 219 KP 220
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMM 233
+G+R+R+AFKL+QLN +F + +K VDLCAAPG W QV + ++
Sbjct: 19 QGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLSRELL 64
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 60/119 (50%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT K I + K D V DG+P+V D Y Q L + AL+L + ILK+G
Sbjct: 99 DITHPKTLARILKLFGNEKADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKG 158
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKF 121
G FV K+FR +D L LF ++ KP++SR S E F+VC Y P+ K
Sbjct: 159 GTFVAKIFRGRDIDMLYSQLGYLFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSNWTPKL 217
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKV--CVDLCAAPGGWMQVAKQNMM 233
+GYR+R+AFKL+QLN +F FL + VDLCAAPG W QV + +
Sbjct: 19 QGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQVLSRKLF 66
>sp|Q12WR3|RLME_METBU Ribosomal RNA large subunit methyltransferase E OS=Methanococcoides
burtonii (strain DSM 6242) GN=rlmE PE=3 SV=1
Length = 267
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT+D+ I + DVV+ D +PN+ NW D LT AL+ A ILK
Sbjct: 84 DITSDETIKKIIELVGEGGADVVICDAAPNLSGNWSLDHARSIDLTTSALECAKKILKPK 143
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYI-APAKLDTKF 121
G F+ KVF+ + + ++ F + P+ASR ESAEI+V+ + + AP K+D KF
Sbjct: 144 GHFIVKVFQGDMFKEYMDKVRESFTYTRAFSPKASRPESAEIYVIGKKLLTAPLKIDDKF 203
Query: 122 FDPKYAFKELGA 133
K++GA
Sbjct: 204 ---DVTIKKIGA 212
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
GYRSRAA+KL Q+N K E +++ VDL AAPGGW++VAK+ + I+ D
Sbjct: 17 GYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGWLEVAKK-ISGGKIVGVD 68
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT + I D+++ DG+P+V D Y Q L L AL + + LK G
Sbjct: 94 DITKYETSKQIISHFDGSLADLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIG 153
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G FV K+F+ D + + K F+ V KP +SR+ S E F++C++Y P + K
Sbjct: 154 GTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSRESSLENFILCRNYQPPLNYNPKII 213
Query: 123 DP 124
DP
Sbjct: 214 DP 215
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA 234
G+R+R+AFKLIQ++ +++ + K VDLCAAPG W QV + +
Sbjct: 20 GWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLSRRIYG 65
>sp|A4FYM2|RLME_METM5 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=rlmE PE=3
SV=1
Length = 258
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 14 TRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK 73
R+L K DV++ D SPN+ W D LT AL A+ +LK+GG FV KVF+
Sbjct: 106 ARDLLPEKPDVIICDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQGD 165
Query: 74 DYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
+ + + + F + +TKP+ASR ESAE++V+ + +
Sbjct: 166 LFEKYVQLVSEYFDKAFTTKPRASRDESAEVYVIGKRF 203
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAK 229
+ YRSRA +KL QLN KF +++ V VDL APGGW+Q A+
Sbjct: 24 RNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65
>sp|A9A6B9|RLME_METM6 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=rlmE PE=3
SV=1
Length = 258
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 14 TRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK 73
R+L K DV++ D SPN+ W D LT AL A+ +LK GG FV KVF+
Sbjct: 106 ARDLLPEKPDVIICDASPNISGVWDVDHARSLELTTMALMTATKMLKRGGNFVVKVFQGD 165
Query: 74 DYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
+ + + + F + +TKP+ASR ESAE++V+ + +
Sbjct: 166 LFEKYVQLVSEYFDKAFTTKPRASRDESAEVYVIGKRF 203
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAK 229
+ YRSRA +KL QLN KF +++ V VDL APGGW+Q A+
Sbjct: 24 RNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DI + I + + DVVL D +PN+ NW YD L AL+ A ILK
Sbjct: 84 DINAESTIKKIIKIVGEKGADVVLCDAAPNLSGNWSYDHARSIELATSALECAKKILKPK 143
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYI-APAKLDTKF 121
G F KVF+ + L + F RV + PQASR +SAEI+++ + ++ AP + KF
Sbjct: 144 GNFAVKVFQGDMFNDYLDEVRNNFVRVKAYSPQASRSQSAEIYIIGKKFLTAPLRKGDKF 203
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQ 230
GYRSRA+FKL Q+N K +++ VDL AAPGGW+QVAKQ
Sbjct: 17 GYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQ 58
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
+I D I + + DVVL D +PN+ NW YD L AL+ A ILK
Sbjct: 84 NINADSTIQKIIKTVGAKGADVVLCDAAPNLSGNWSYDHARSIELATSALECAKKILKPK 143
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYI-APAKLDTKF 121
G FV KVF+ + + + F R + P+ASR +SAEI+V+ + ++ AP + KF
Sbjct: 144 GNFVVKVFQGDMFNDYMQKVRDNFVRTMAYSPKASRSQSAEIYVIGKKFLTAPLRKGDKF 203
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQ 230
GYRSRA+FKL Q+N + + + VDL AAPGGW+QVAK+
Sbjct: 17 GYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKE 58
>sp|Q6LZL8|RLME_METMP Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain S2 / LL) GN=rlmE PE=3 SV=1
Length = 258
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80
K DV++ D SPN+ W D LT AL A+ +LK+GG FV KVF+ + +
Sbjct: 113 KPDVIICDASPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQ 172
Query: 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
+ + F + +TKP+ASR ESAE++V+ + +
Sbjct: 173 LVSEYFDKAFTTKPRASRDESAEVYVIGKRF 203
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAK 229
+ YRSRA +KL QLN KF +++ V VDL APGGW+Q A+
Sbjct: 24 RNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65
>sp|A6VJR0|RLME_METM7 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=rlmE PE=3
SV=1
Length = 258
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80
K DV++ D SPN+ W D LT AL A+ +LK+GG FV KVF+ + +
Sbjct: 113 KPDVIICDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQ 172
Query: 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
+ + F + +TKP+ASR ESAE++V+ + +
Sbjct: 173 LVSEYFDKAFTTKPRASRDESAEVYVIGKRF 203
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESVL 246
+ YRSRA +KL QLN KF +++ V VDL APGGW+Q A+ + I+ D ++V
Sbjct: 24 RNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVGEKGFIVGIDLQTVK 83
Query: 247 KHPSTTV 253
P V
Sbjct: 84 PLPYENV 90
>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1
Length = 320
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPN-VGMNWVYDAYHQCCLTLGALKLASGILKE 61
DI+ + AI K +V+ DG+P+ GM+ +D+Y Q L L AL +++ IL+E
Sbjct: 97 DISKESTAEAIIEFFGGEKAQIVVSDGAPDSTGMH-DFDSYVQGELLLSALSISTFILEE 155
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114
GG FV+K++R+ + L K+ F+ V KP ASR S E FVV + + P
Sbjct: 156 GGSFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSIEAFVVAREFCLP 208
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNM 232
+G+R+R+AFKL+Q + F+ L+ VDLCAAPG W QV + +
Sbjct: 19 QGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRL 63
>sp|A6UUK5|RLME_META3 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rlmE PE=3
SV=1
Length = 269
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%)
Query: 16 ELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDY 75
+L K DVV+ D SPN+ W D L+L AL + +L++ G FV KVF+ +
Sbjct: 108 DLMPSKADVVICDASPNISGVWEVDHSRSIELSLMALIATTHLLRKNGNFVVKVFQGSLF 167
Query: 76 TSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIA 113
+ + + F++V +TKP+ASR SAE++V+ + ++
Sbjct: 168 DQYVQLLTKYFKKVQTTKPKASRSVSAEVYVIGKKFLG 205
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
YRSRA++KL+QLN KFE + + VDL APGGW+Q +
Sbjct: 26 YRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQAS 64
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT ++ I L + DVV+ D +PN+ W D L+ AL++A +L+ G
Sbjct: 84 DITKEETLEQIAAALGG-QADVVISDAAPNLSGIWDVDHARSIDLSRAALRIAKRLLRPG 142
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G F+ KVF+ + L K+ F VH+ P ASRKESAEI+V+ + ++ + +
Sbjct: 143 GSFLVKVFQGDMFNDYLEEVKREFSSVHAYTPPASRKESAEIYVIGKKLLSAPVRSGEIY 202
Query: 123 D 123
D
Sbjct: 203 D 203
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245
GYR+R+A+KL Q+N KF +++ VDL AAPGGW+QVA++ + ++ D E +
Sbjct: 17 GYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVARE-LSGGIVVGVDLERI 72
>sp|Q5FNQ1|RLME_GLUOX Ribosomal RNA large subunit methyltransferase E OS=Gluconobacter
oxydans (strain 621H) GN=rlmE PE=3 SV=1
Length = 268
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 22 VDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWI 81
D+V+ D +PN + D L GAL A +L EGG F+ KVF+ +L +
Sbjct: 167 ADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDMLAL 226
Query: 82 FKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
K F V KP ASRKES+E++V+ +
Sbjct: 227 MKTAFSSVKHVKPPASRKESSELYVIATGF 256
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
+G+RSRAAFKLI+++ +F+ + + +DL AAPGGW QVA
Sbjct: 81 QGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPGGWTQVA 121
>sp|Q6G0S9|RLME_BARQU Ribosomal RNA large subunit methyltransferase E OS=Bartonella
quintana (strain Toulouse) GN=rlmE PE=3 SV=1
Length = 241
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMAS----SIIHFDDES 244
GYRSRAA+KLI++N +++FL+K + +DL AAPGGW QVA++ + +S S++ D
Sbjct: 55 GYRSRAAYKLIEMNERYKFLKKGQKIIDLGAAPGGWCQVAQRIVGSSDEKPSVVGIDYLP 114
Query: 245 VLKHPSTTV 253
V+ P +
Sbjct: 115 VVPLPGVIM 123
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 21 KVDVVLHD-GSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLL 79
K DVVL D +P G D L A A +LK GG F+ K F+ +LL
Sbjct: 144 KPDVVLSDMAAPTTGHRQT-DYLRTTYLCEVAADFALSVLKSGGHFLVKAFQGGAENTLL 202
Query: 80 WIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIA 113
KQ F+ VH KP ASR ES E++++ + A
Sbjct: 203 TTLKQNFKTVHHVKPPASRTESVELYLLALEFKA 236
>sp|Q0W1F9|RLME_UNCMA Ribosomal RNA large subunit methyltransferase E OS=Uncultured
methanogenic archaeon RC-I GN=rlmE PE=3 SV=1
Length = 256
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 22 VDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWI 81
VD V+ D +PN+ NW D L AL +A+ +LK+GG FV KVF+ Y + +
Sbjct: 102 VDTVICDAAPNLSGNWALDHARSIDLATVALDVATKLLKKGGNFVVKVFQGDLYENYVKE 161
Query: 82 FKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPA 115
+ F + K QASR++SAEI+V+ + ++ +
Sbjct: 162 VGKRFSYATTYKSQASRQQSAEIYVIGKGFLTTS 195
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV--- 245
GYRSRA+FKL +N+K ++K VDL AAPGGW+QVAK+ +I D + +
Sbjct: 17 GYRSRASFKLQFINKKHHIIKKGDTVVDLGAAPGGWLQVAKELNGGGKVIGVDLQRIEPI 76
Query: 246 ---------LKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLH 281
+ P T I E ++ + NL W + H
Sbjct: 77 EGVETIKGDMTSPETQARIFEIVDEVDTVICDAAPNLSGNWALDH 121
>sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rlmE PE=3 SV=1
Length = 259
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLG--ALKLASGILK 60
D+T D+ R + R+ DVV+ D +P+ M YD H + L AL+ A +L
Sbjct: 88 DMTEDETRQRV-RDAANGSADVVVSDMAPD--MTGEYDLDHARSVHLARQALETARELLD 144
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQ-HYIAP 114
GG FV KVF +D+ LL + F V + P ASR S+E++VV + H +AP
Sbjct: 145 AGGHFVVKVFDGRDFQDLLADIEDEFAFVATHSPDASRDASSELYVVGKNHIVAP 199
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESVL 246
+GYRSRAA+KL QL+ +F+ L VDL AAPGGW+QVA + A ++ D +S+
Sbjct: 15 EGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGARGKVVGVDFQSIT 74
Query: 247 K 247
+
Sbjct: 75 Q 75
>sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE
PE=3 SV=1
Length = 259
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLG--ALKLASGILK 60
D+T D+ R + R+ DVV+ D +P+ M YD H + L AL+ A +L
Sbjct: 88 DMTEDETRQRV-RDAANGSADVVVSDMAPD--MTGEYDLDHARSVHLARQALETARELLD 144
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQ-HYIAP 114
GG FV KVF +D+ LL + F V + P ASR S+E++VV + H +AP
Sbjct: 145 AGGHFVVKVFDGRDFQDLLADIEDEFAFVATHSPDASRDASSELYVVGKNHIVAP 199
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESVL 246
+GYRSRAA+KL QL+ +F+ L VDL AAPGGW+QVA + A ++ D +S+
Sbjct: 15 EGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGARGKVVGVDFQSIT 74
Query: 247 K 247
+
Sbjct: 75 Q 75
>sp|A4SXL6|RLME_POLSQ Ribosomal RNA large subunit methyltransferase E OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=rlmE PE=3 SV=1
Length = 224
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80
KVD+VL D +PN+ V D+ L AL A+ LK G + K F Y+ ++
Sbjct: 130 KVDLVLSDMAPNLSGVGVADSARMAFLAEIALDFATAHLKPEGALLIKCFNGSGYSQIVE 189
Query: 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114
FK++F+ V S KP+ASR +S+EIF++ ++ P
Sbjct: 190 SFKKVFKTVASRKPKASRAKSSEIFLLGKNLKPP 223
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNM 232
GYR+RA +KL +++ + ++ VDL +APG W Q + +
Sbjct: 27 GYRARAVYKLSEIDEQDHLIKAGMTIVDLGSAPGSWSQYVRNRL 70
>sp|A9IMA1|RLME_BART1 Ribosomal RNA large subunit methyltransferase E OS=Bartonella
tribocorum (strain CIP 105476 / IBS 506) GN=rlmE PE=3
SV=1
Length = 242
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 40/48 (83%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS 236
GYRSRAA+KLI++N +++FL+K + +DL AAPGGW QVA++ + +S+
Sbjct: 55 GYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQVAERIVGSSN 102
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 21 KVDVVLHD-GSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLL 79
K DVVL D +P G D L A A +LK GG F+ K F+ +LL
Sbjct: 144 KPDVVLSDMAAPTTGHRQT-DHLRTIYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLL 202
Query: 80 WIFKQLFQRVHSTKPQASRKESAEIFVVC 108
I KQ F++V+ KP ASR ES E++++
Sbjct: 203 AILKQHFKKVYHVKPPASRSESVELYLLA 231
>sp|A2SSW7|RLME_METLZ Ribosomal RNA large subunit methyltransferase E
OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z) GN=rlmE PE=3 SV=1
Length = 203
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%)
Query: 22 VDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWI 81
V+VV+ D SP++ YD L AL AS +LK+GG V K F+ D+ LL +
Sbjct: 102 VNVVVCDASPHLSGAKAYDQARVMGLNEEALNFASNLLKQGGNLVMKSFQGSDFNELLAL 161
Query: 82 FKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTK 120
K+ F V + A+R+ S E ++V +++I A D K
Sbjct: 162 VKEKFYSVRVIRSTATRRGSTECYIVAKNFIGDADDDRK 200
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAK 229
GYR+R+A+KLI +N +F ++++ VDL AAPG W+QV K
Sbjct: 18 GYRARSAYKLIDINERFNVIRQTDNVVDLGAAPGSWLQVLK 58
>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1
OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1
Length = 302
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80
K +V+ DG+P+V D Y Q L + AL +A+ +L+ GG FV K+F+ + TSLL
Sbjct: 117 KAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKG-NATSLLS 175
Query: 81 IFKQL-FQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFFDP 124
Q+ F++ KP +SR S E FVVC + P + +P
Sbjct: 176 SQMQIFFKKFDIYKPPSSRPSSIEAFVVCSDFCLPEGYIPQVINP 220
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNM 232
G+R+R+AFKL+ ++ + L + VDLCAAPG W QV + +
Sbjct: 20 GWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKL 63
>sp|Q2GB53|RLME_NOVAD Ribosomal RNA large subunit methyltransferase E OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=rlmE PE=3 SV=1
Length = 222
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
G+RSRAAFKLI+L+ KF L+ +K VDL APGGW QV ++ A+ I+ D
Sbjct: 42 GWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPGGWSQVVRKKAPAAKIVGID 94
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%)
Query: 23 DVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIF 82
D+VL D + N + D L A+ A L GG FV KVF T LL I
Sbjct: 129 DLVLSDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTELLAIL 188
Query: 83 KQLFQRVHSTKPQASRKESAEIFVVCQHY 111
K+ F V KP ASRK+S+E +V+ Q +
Sbjct: 189 KKNFTTVKHAKPPASRKDSSEWYVIAQGF 217
>sp|Q5UYP9|RLME_HALMA Ribosomal RNA large subunit methyltransferase E OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=rlmE PE=3 SV=1
Length = 263
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 2 EDITTDKCR-IAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILK 60
ED T D+ R I + VDVV+ D +PN+ + D L A ++A+ +L
Sbjct: 91 EDSTKDEIREIVGESDGSGGPVDVVISDMAPNMTGQYDLDHARSVHLVRQAFEVATDLLD 150
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQH 110
GG F KVF +D L+ + F+ V +P ASR S+E+++V +H
Sbjct: 151 AGGDFCAKVFDGQDLDDLIADIEPEFEYVREVRPDASRDSSSELYLVAKH 200
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDESV- 245
+GYR+R+A+KL QL+ L + + VDL AAPGGWMQVA + + +++ D +++
Sbjct: 14 EGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAERIGERGTLVGVDRQTID 73
Query: 246 -LKHPSTTVE 254
L+ P TVE
Sbjct: 74 DLEDPEPTVE 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,523,738
Number of Sequences: 539616
Number of extensions: 9656863
Number of successful extensions: 143350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1916
Number of HSP's successfully gapped in prelim test: 3043
Number of HSP's that attempted gapping in prelim test: 72960
Number of HSP's gapped (non-prelim): 35737
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)