Query psy3133
Match_columns 547
No_of_seqs 411 out of 1971
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1098|consensus 100.0 4E-100 1E-104 816.7 26.8 469 1-541 90-725 (780)
2 COG0293 FtsJ 23S rRNA methylas 100.0 3.5E-30 7.6E-35 250.7 12.7 114 1-114 91-204 (205)
3 KOG1099|consensus 100.0 9.2E-30 2E-34 250.6 11.8 126 1-126 95-220 (294)
4 PF11861 DUF3381: Domain of un 100.0 1.4E-28 3E-33 231.6 13.1 157 141-357 1-159 (159)
5 KOG4589|consensus 99.9 3E-27 6.6E-32 227.3 12.3 112 3-114 118-229 (232)
6 PF01728 FtsJ: FtsJ-like methy 99.9 9.2E-26 2E-30 211.2 5.7 111 1-111 69-181 (181)
7 PF07780 Spb1_C: Spb1 C-termin 99.9 7.2E-25 1.6E-29 214.6 10.1 85 456-541 39-159 (215)
8 COG0293 FtsJ 23S rRNA methylas 99.9 5.9E-24 1.3E-28 207.3 4.6 112 165-284 2-120 (205)
9 PRK11188 rrmJ 23S rRNA methylt 99.9 5.6E-22 1.2E-26 192.5 14.2 113 1-113 97-209 (209)
10 KOG4589|consensus 99.9 6.3E-23 1.4E-27 197.6 1.9 95 162-264 23-121 (232)
11 KOG1098|consensus 99.7 1.4E-18 2.9E-23 189.3 4.0 96 173-276 11-108 (780)
12 KOG1099|consensus 99.7 1.2E-17 2.6E-22 165.4 3.2 83 174-264 9-100 (294)
13 PRK11188 rrmJ 23S rRNA methylt 99.7 8.8E-17 1.9E-21 156.3 5.5 93 164-264 7-102 (209)
14 PF01728 FtsJ: FtsJ-like methy 99.6 7.8E-17 1.7E-21 151.0 4.4 71 190-264 1-74 (181)
15 KOG3674|consensus 99.6 2.3E-16 4.9E-21 168.3 6.1 117 1-117 205-324 (696)
16 TIGR00438 rrmJ cell division p 99.6 4.8E-15 1E-19 140.2 13.2 110 2-111 79-188 (188)
17 KOG3673|consensus 99.6 1.8E-15 4E-20 162.9 9.2 112 2-113 329-446 (845)
18 PRK11760 putative 23S rRNA C24 99.5 7.1E-15 1.5E-19 153.3 7.2 110 164-283 165-300 (357)
19 COG1189 Predicted rRNA methyla 99.2 4E-11 8.7E-16 119.9 6.4 56 188-244 57-112 (245)
20 TIGR00438 rrmJ cell division p 99.0 7.5E-10 1.6E-14 104.9 7.1 80 177-264 3-83 (188)
21 TIGR00478 tly hemolysin TlyA f 99.0 7.4E-10 1.6E-14 110.3 5.9 55 189-244 54-108 (228)
22 COG2933 Predicted SAM-dependen 98.8 3.4E-09 7.3E-14 107.8 4.4 92 189-283 183-300 (358)
23 PF14314 Methyltrans_Mon: Viru 98.2 7.1E-06 1.5E-10 92.7 12.0 117 2-127 394-515 (675)
24 PTZ00146 fibrillarin; Provisio 97.6 2.3E-05 5E-10 81.2 2.5 37 208-244 130-167 (293)
25 PF06460 NSP13: Coronavirus NS 97.6 8.5E-05 1.8E-09 76.0 5.8 109 19-129 119-231 (299)
26 PF12847 Methyltransf_18: Meth 97.5 0.00014 2.9E-09 62.2 4.2 53 210-262 1-61 (112)
27 PRK04266 fibrillarin; Provisio 97.4 0.00012 2.7E-09 72.8 4.1 37 208-244 70-106 (226)
28 PLN02336 phosphoethanolamine N 97.4 0.00027 5.8E-09 76.3 7.0 44 199-244 256-299 (475)
29 TIGR02469 CbiT precorrin-6Y C5 97.3 0.00031 6.7E-09 60.4 4.3 38 208-245 17-54 (124)
30 TIGR02752 MenG_heptapren 2-hep 97.0 0.00071 1.5E-08 65.6 4.2 37 208-244 43-80 (231)
31 PRK14103 trans-aconitate 2-met 97.0 0.00033 7.2E-09 69.6 1.9 50 191-244 14-63 (255)
32 PRK15068 tRNA mo(5)U34 methylt 96.9 0.0013 2.8E-08 68.7 5.6 51 193-245 106-156 (322)
33 PRK01683 trans-aconitate 2-met 96.8 0.0012 2.5E-08 65.4 4.1 37 208-244 29-65 (258)
34 COG2230 Cfa Cyclopropane fatty 96.8 0.0016 3.4E-08 67.6 4.9 46 197-244 60-105 (283)
35 TIGR00138 gidB 16S rRNA methyl 96.8 0.0019 4.1E-08 62.1 5.0 34 211-244 43-76 (181)
36 PRK11524 putative methyltransf 96.7 0.1 2.2E-06 53.4 17.6 58 7-67 14-78 (284)
37 TIGR00446 nop2p NOL1/NOP2/sun 96.7 0.0014 3E-08 66.3 3.9 37 208-244 69-106 (264)
38 TIGR03587 Pse_Me-ase pseudamin 96.7 0.002 4.4E-08 63.0 4.8 45 200-244 33-77 (204)
39 PF13489 Methyltransf_23: Meth 96.6 0.002 4.3E-08 57.8 4.0 35 208-244 20-54 (161)
40 PRK14967 putative methyltransf 96.6 0.0024 5.3E-08 62.4 4.9 51 193-245 20-70 (223)
41 TIGR00563 rsmB ribosomal RNA s 96.6 0.0019 4E-08 69.6 4.2 37 208-244 236-272 (426)
42 PRK08317 hypothetical protein; 96.6 0.0022 4.8E-08 61.0 4.3 37 208-244 17-54 (241)
43 TIGR02072 BioC biotin biosynth 96.5 0.0037 8E-08 59.7 5.5 52 193-245 18-69 (240)
44 PRK14902 16S rRNA methyltransf 96.5 0.0024 5.2E-08 69.0 4.3 38 208-245 248-286 (444)
45 PF01209 Ubie_methyltran: ubiE 96.5 0.00081 1.8E-08 67.3 0.3 59 208-266 45-111 (233)
46 PF02353 CMAS: Mycolic acid cy 96.4 0.0031 6.6E-08 64.7 4.3 45 197-243 50-94 (273)
47 PRK09489 rsmC 16S ribosomal RN 96.4 0.056 1.2E-06 57.2 13.5 35 211-245 197-231 (342)
48 PRK00121 trmB tRNA (guanine-N( 96.4 0.0033 7.2E-08 61.0 4.0 35 210-244 40-74 (202)
49 PF13847 Methyltransf_31: Meth 96.4 0.0035 7.7E-08 57.3 3.9 58 209-266 2-67 (152)
50 PRK10901 16S rRNA methyltransf 96.3 0.0034 7.3E-08 67.7 4.3 37 208-244 242-278 (427)
51 PRK07402 precorrin-6B methylas 96.3 0.0041 9E-08 59.5 4.2 37 208-244 38-74 (196)
52 PRK00107 gidB 16S rRNA methylt 96.3 0.0053 1.1E-07 59.6 4.9 39 206-244 41-79 (187)
53 PRK11705 cyclopropane fatty ac 96.2 0.0062 1.3E-07 65.2 5.4 46 197-244 155-200 (383)
54 PLN02244 tocopherol O-methyltr 96.2 0.0069 1.5E-07 63.5 5.6 47 198-245 102-152 (340)
55 PRK00216 ubiE ubiquinone/menaq 96.1 0.0085 1.8E-07 57.5 5.4 36 209-244 50-86 (239)
56 PRK08287 cobalt-precorrin-6Y C 96.1 0.0059 1.3E-07 57.9 4.1 36 209-244 30-65 (187)
57 COG2226 UbiE Methylase involve 96.1 0.0049 1.1E-07 62.5 3.7 57 210-266 51-114 (238)
58 PRK11873 arsM arsenite S-adeno 96.1 0.0062 1.3E-07 61.0 4.3 37 208-244 75-112 (272)
59 TIGR00740 methyltransferase, p 96.1 0.0054 1.2E-07 60.4 3.8 38 207-244 50-89 (239)
60 PRK00811 spermidine synthase; 96.0 0.028 6.1E-07 57.7 8.7 85 19-110 148-237 (283)
61 PRK00377 cbiT cobalt-precorrin 96.0 0.0074 1.6E-07 58.0 4.2 37 208-244 38-75 (198)
62 TIGR00452 methyltransferase, p 96.0 0.012 2.5E-07 61.8 5.8 50 193-244 105-154 (314)
63 PRK14904 16S rRNA methyltransf 95.9 0.0081 1.7E-07 65.2 4.3 37 208-244 248-285 (445)
64 PLN02233 ubiquinone biosynthes 95.9 0.0086 1.9E-07 60.5 4.2 37 208-244 71-108 (261)
65 TIGR00477 tehB tellurite resis 95.8 0.011 2.3E-07 57.1 4.6 41 202-245 23-63 (195)
66 PRK13944 protein-L-isoaspartat 95.8 0.0088 1.9E-07 58.1 4.0 37 208-244 70-107 (205)
67 TIGR01934 MenG_MenH_UbiE ubiqu 95.7 0.016 3.5E-07 54.9 5.3 36 209-244 38-74 (223)
68 PRK11036 putative S-adenosyl-L 95.7 0.014 3.1E-07 58.1 5.0 43 198-244 34-76 (255)
69 PF08003 Methyltransf_9: Prote 95.7 0.013 2.7E-07 61.7 4.6 51 193-245 99-149 (315)
70 PRK14901 16S rRNA methyltransf 95.6 0.011 2.4E-07 63.9 4.2 37 208-244 250-287 (434)
71 PRK14902 16S rRNA methyltransf 95.6 0.038 8.3E-07 59.9 8.2 75 20-94 319-409 (444)
72 TIGR00080 pimt protein-L-isoas 95.6 0.014 2.9E-07 56.9 4.1 37 208-244 75-112 (215)
73 PRK13942 protein-L-isoaspartat 95.5 0.013 2.9E-07 57.3 4.0 37 208-244 74-111 (212)
74 TIGR02081 metW methionine bios 95.5 0.015 3.3E-07 55.6 4.0 37 207-244 10-46 (194)
75 TIGR00406 prmA ribosomal prote 95.4 0.012 2.7E-07 60.2 3.5 37 208-245 157-193 (288)
76 PRK14903 16S rRNA methyltransf 95.3 0.016 3.5E-07 62.9 4.2 37 208-244 235-272 (431)
77 PTZ00098 phosphoethanolamine N 95.3 0.016 3.5E-07 58.6 4.0 42 201-244 44-85 (263)
78 smart00650 rADc Ribosomal RNA 95.3 0.016 3.4E-07 54.3 3.6 35 208-244 11-45 (169)
79 TIGR03438 probable methyltrans 95.3 0.024 5.3E-07 58.4 5.2 37 208-244 61-98 (301)
80 PRK11088 rrmA 23S rRNA methylt 95.2 0.052 1.1E-06 54.8 7.3 36 209-244 84-122 (272)
81 PRK15451 tRNA cmo(5)U34 methyl 95.2 0.018 3.8E-07 57.5 3.7 37 208-244 54-92 (247)
82 COG2264 PrmA Ribosomal protein 95.2 0.02 4.4E-07 60.0 4.2 37 209-246 161-197 (300)
83 PRK13943 protein-L-isoaspartat 95.2 0.018 3.9E-07 60.6 3.9 37 208-244 78-115 (322)
84 PRK06202 hypothetical protein; 95.2 0.029 6.2E-07 55.0 5.0 36 209-244 59-98 (232)
85 PRK10258 biotin biosynthesis p 95.1 0.018 4E-07 56.8 3.6 34 209-244 41-74 (251)
86 PRK00274 ksgA 16S ribosomal RN 95.1 0.019 4.2E-07 58.3 3.7 57 208-266 40-100 (272)
87 PRK11207 tellurite resistance 95.0 0.028 6.1E-07 54.3 4.5 33 210-244 30-62 (197)
88 TIGR02021 BchM-ChlM magnesium 95.0 0.031 6.6E-07 54.2 4.8 35 208-244 53-87 (219)
89 PF06325 PrmA: Ribosomal prote 95.0 0.032 7E-07 58.1 5.0 64 163-246 133-196 (295)
90 PRK05785 hypothetical protein; 95.0 0.025 5.5E-07 56.0 4.0 35 209-244 50-84 (226)
91 PLN02490 MPBQ/MSBQ methyltrans 94.9 0.031 6.7E-07 59.3 4.8 44 201-244 104-147 (340)
92 smart00828 PKS_MT Methyltransf 94.9 0.025 5.5E-07 54.6 3.7 33 212-244 1-33 (224)
93 TIGR00537 hemK_rel_arch HemK-r 94.9 0.022 4.7E-07 53.7 3.1 35 209-245 18-52 (179)
94 PRK00050 16S rRNA m(4)C1402 me 94.8 0.039 8.4E-07 57.7 5.2 46 199-245 9-55 (296)
95 PF13649 Methyltransf_25: Meth 94.8 0.024 5.2E-07 48.3 3.0 52 214-265 1-61 (101)
96 PRK12335 tellurite resistance 94.7 0.034 7.3E-07 56.8 4.3 36 207-245 118-153 (287)
97 PF13659 Methyltransf_26: Meth 94.7 0.031 6.7E-07 48.1 3.5 35 211-246 1-35 (117)
98 TIGR00091 tRNA (guanine-N(7)-) 94.7 0.038 8.2E-07 53.2 4.4 35 210-244 16-50 (194)
99 PRK14968 putative methyltransf 94.7 0.049 1.1E-06 50.5 4.9 34 209-244 22-55 (188)
100 PLN02396 hexaprenyldihydroxybe 94.6 0.058 1.3E-06 56.8 5.8 34 209-244 130-163 (322)
101 PF01135 PCMT: Protein-L-isoas 94.5 0.044 9.6E-07 54.3 4.4 37 208-244 70-107 (209)
102 PRK07580 Mg-protoporphyrin IX 94.5 0.04 8.6E-07 53.1 4.0 34 209-244 62-95 (230)
103 PRK00517 prmA ribosomal protei 94.5 0.056 1.2E-06 54.1 5.2 37 208-245 117-153 (250)
104 PRK10901 16S rRNA methyltransf 94.5 0.17 3.8E-06 54.7 9.2 67 19-85 311-391 (427)
105 COG4106 Tam Trans-aconitate me 94.4 0.035 7.5E-07 56.3 3.5 52 189-244 13-64 (257)
106 TIGR00755 ksgA dimethyladenosi 94.4 0.037 8.1E-07 55.3 3.7 35 208-244 27-61 (253)
107 PRK06922 hypothetical protein; 94.3 0.039 8.5E-07 63.2 4.0 35 210-244 418-452 (677)
108 PRK00312 pcm protein-L-isoaspa 94.3 0.046 9.9E-07 52.9 4.0 35 208-244 76-110 (212)
109 TIGR02716 C20_methyl_CrtF C-20 94.3 0.039 8.4E-07 56.5 3.6 38 208-245 147-184 (306)
110 PRK09328 N5-glutamine S-adenos 94.2 0.057 1.2E-06 53.7 4.6 38 208-245 106-143 (275)
111 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.2 0.056 1.2E-06 55.7 4.5 37 208-244 83-120 (283)
112 COG2263 Predicted RNA methylas 94.1 0.083 1.8E-06 52.4 5.4 68 194-264 31-104 (198)
113 PF05175 MTS: Methyltransferas 93.9 0.08 1.7E-06 49.9 4.7 36 210-245 31-66 (170)
114 PLN02585 magnesium protoporphy 93.9 0.083 1.8E-06 55.5 5.3 34 209-244 143-176 (315)
115 PRK11933 yebU rRNA (cytosine-C 93.9 0.053 1.2E-06 59.9 4.0 37 208-244 111-148 (470)
116 PF08241 Methyltransf_11: Meth 93.9 0.053 1.2E-06 44.0 3.0 29 215-244 1-29 (95)
117 TIGR00095 RNA methyltransferas 93.8 0.041 8.9E-07 53.3 2.6 36 209-245 48-83 (189)
118 TIGR00417 speE spermidine synt 93.8 0.2 4.3E-06 50.9 7.6 84 20-110 144-232 (270)
119 PF08242 Methyltransf_12: Meth 93.7 0.027 5.9E-07 47.5 1.1 31 215-245 1-31 (99)
120 PTZ00146 fibrillarin; Provisio 93.7 0.35 7.6E-06 50.7 9.3 61 21-94 202-272 (293)
121 TIGR03534 RF_mod_PrmC protein- 93.7 0.055 1.2E-06 52.7 3.2 36 209-244 86-121 (251)
122 PRK15001 SAM-dependent 23S rib 93.6 0.057 1.2E-06 58.1 3.5 36 211-246 229-264 (378)
123 cd02440 AdoMet_MTases S-adenos 93.5 0.061 1.3E-06 42.7 2.7 31 213-244 1-31 (107)
124 PF07021 MetW: Methionine bios 93.5 0.065 1.4E-06 53.0 3.4 38 206-244 9-46 (193)
125 PRK01544 bifunctional N5-gluta 93.4 0.76 1.7E-05 51.2 11.9 35 210-244 347-381 (506)
126 PRK13699 putative methylase; P 93.4 4.9 0.00011 40.3 16.6 86 7-97 7-103 (227)
127 PRK14896 ksgA 16S ribosomal RN 93.4 0.073 1.6E-06 53.7 3.7 35 208-244 27-61 (258)
128 TIGR03840 TMPT_Se_Te thiopurin 93.1 0.13 2.8E-06 50.9 4.8 35 209-245 33-67 (213)
129 TIGR01983 UbiG ubiquinone bios 93.0 0.14 2.9E-06 49.4 4.8 34 209-244 44-77 (224)
130 TIGR03533 L3_gln_methyl protei 93.0 0.086 1.9E-06 54.1 3.5 37 209-245 120-156 (284)
131 PHA03411 putative methyltransf 92.8 0.11 2.3E-06 54.2 4.0 36 210-245 64-99 (279)
132 COG0144 Sun tRNA and rRNA cyto 92.8 0.11 2.5E-06 55.1 4.2 37 208-244 154-192 (355)
133 PTZ00338 dimethyladenosine tra 92.7 0.092 2E-06 54.6 3.3 35 208-244 34-68 (294)
134 PLN02336 phosphoethanolamine N 92.7 0.11 2.4E-06 56.4 4.0 34 209-244 36-69 (475)
135 PF00398 RrnaAD: Ribosomal RNA 92.7 0.17 3.8E-06 51.1 5.2 33 210-244 30-62 (262)
136 KOG2198|consensus 92.4 0.11 2.5E-06 55.8 3.5 37 208-244 153-193 (375)
137 PRK03522 rumB 23S rRNA methylu 92.4 0.19 4.1E-06 52.1 5.1 34 210-245 173-206 (315)
138 PRK05134 bifunctional 3-demeth 92.3 0.2 4.4E-06 48.7 4.9 35 208-244 46-80 (233)
139 TIGR03704 PrmC_rel_meth putati 92.2 0.2 4.3E-06 50.6 4.8 36 210-245 86-121 (251)
140 TIGR01444 fkbM_fam methyltrans 92.1 0.14 3E-06 45.9 3.3 33 213-245 1-33 (143)
141 PRK15128 23S rRNA m(5)C1962 me 92.0 0.13 2.8E-06 55.6 3.5 36 209-245 219-254 (396)
142 PRK14121 tRNA (guanine-N(7)-)- 92.0 0.14 3E-06 55.5 3.8 36 209-244 121-156 (390)
143 KOG1499|consensus 91.9 0.18 3.9E-06 53.9 4.3 38 208-246 58-95 (346)
144 PRK13168 rumA 23S rRNA m(5)U19 91.8 0.25 5.3E-06 53.8 5.4 36 208-245 295-330 (443)
145 TIGR01177 conserved hypothetic 91.8 0.26 5.6E-06 51.4 5.3 35 208-244 180-214 (329)
146 KOG3420|consensus 91.5 0.055 1.2E-06 52.1 0.0 68 195-264 34-107 (185)
147 PRK10909 rsmD 16S rRNA m(2)G96 91.4 0.27 5.9E-06 48.4 4.7 36 209-245 52-87 (199)
148 PF06016 Reovirus_L2: Reovirus 91.1 0.49 1.1E-05 57.6 7.2 89 19-111 567-657 (1289)
149 PLN02366 spermidine synthase 91.0 1.1 2.3E-05 47.2 8.9 84 19-110 163-253 (308)
150 PRK11805 N5-glutamine S-adenos 91.0 0.18 3.8E-06 52.6 3.1 34 212-245 135-168 (307)
151 PLN03075 nicotianamine synthas 91.0 0.34 7.5E-06 50.8 5.2 35 210-244 123-159 (296)
152 PRK11783 rlmL 23S rRNA m(2)G24 90.8 0.21 4.5E-06 57.7 3.8 36 209-245 537-572 (702)
153 PRK01544 bifunctional N5-gluta 90.8 0.22 4.8E-06 55.4 3.8 36 210-245 138-173 (506)
154 COG1092 Predicted SAM-dependen 90.6 0.16 3.4E-06 55.2 2.3 54 210-264 217-279 (393)
155 TIGR00536 hemK_fam HemK family 90.3 0.35 7.6E-06 49.4 4.5 35 211-245 115-149 (284)
156 smart00138 MeTrc Methyltransfe 90.2 0.5 1.1E-05 48.1 5.5 37 209-245 98-143 (264)
157 PF00891 Methyltransf_2: O-met 90.1 0.13 2.9E-06 50.5 1.3 57 207-263 97-153 (241)
158 PRK04266 fibrillarin; Provisio 90.1 1.3 2.9E-05 44.3 8.4 74 21-109 141-224 (226)
159 PF05175 MTS: Methyltransferas 90.0 0.48 1E-05 44.7 4.9 44 46-93 117-161 (170)
160 PRK00536 speE spermidine synth 90.0 0.6 1.3E-05 48.2 5.9 58 20-93 138-199 (262)
161 PF03848 TehB: Tellurite resis 89.6 0.48 1E-05 46.8 4.7 38 205-245 26-63 (192)
162 PRK14901 16S rRNA methyltransf 89.6 1.1 2.4E-05 48.8 7.8 88 20-110 324-430 (434)
163 COG4123 Predicted O-methyltran 89.2 0.27 5.9E-06 50.4 2.7 56 210-266 44-108 (248)
164 KOG1122|consensus 88.9 0.34 7.3E-06 53.2 3.3 36 208-243 239-275 (460)
165 PF02475 Met_10: Met-10+ like- 88.8 0.51 1.1E-05 46.7 4.2 41 206-246 97-137 (200)
166 COG2227 UbiG 2-polyprenyl-3-me 88.3 0.48 1E-05 48.5 3.7 35 209-245 58-92 (243)
167 PRK04457 spermidine synthase; 88.2 0.48 1E-05 48.2 3.7 36 209-244 65-100 (262)
168 TIGR00479 rumA 23S rRNA (uraci 87.9 0.78 1.7E-05 49.5 5.3 35 208-244 290-324 (431)
169 PRK01581 speE spermidine synth 87.8 2.5 5.4E-05 45.9 8.9 84 19-110 224-313 (374)
170 COG2242 CobL Precorrin-6B meth 87.6 0.65 1.4E-05 45.9 4.1 36 208-244 32-68 (187)
171 PRK04148 hypothetical protein; 87.4 0.37 7.9E-06 45.2 2.1 34 210-245 16-50 (134)
172 PRK14966 unknown domain/N5-glu 87.1 0.61 1.3E-05 51.2 4.0 38 208-245 249-286 (423)
173 PF02390 Methyltransf_4: Putat 86.8 0.82 1.8E-05 44.7 4.3 32 213-244 20-51 (195)
174 PRK04457 spermidine synthase; 86.7 3 6.5E-05 42.5 8.5 66 20-92 135-202 (262)
175 TIGR00563 rsmB ribosomal RNA s 86.7 1.5 3.3E-05 47.4 6.7 66 19-84 307-386 (426)
176 PF09243 Rsm22: Mitochondrial 86.5 0.87 1.9E-05 46.7 4.5 47 197-244 21-68 (274)
177 TIGR02085 meth_trns_rumB 23S r 86.4 0.84 1.8E-05 48.8 4.4 34 210-245 233-266 (374)
178 PRK09328 N5-glutamine S-adenos 86.3 4.3 9.2E-05 40.4 9.1 58 46-108 215-273 (275)
179 PRK00811 spermidine synthase; 86.2 0.63 1.4E-05 47.9 3.3 36 210-245 76-111 (283)
180 TIGR00406 prmA ribosomal prote 86.0 2 4.4E-05 44.1 6.9 59 20-92 224-282 (288)
181 PF01564 Spermine_synth: Sperm 86.0 1.5 3.2E-05 44.4 5.7 85 21-112 150-239 (246)
182 PRK11727 23S rRNA mA1618 methy 85.7 0.79 1.7E-05 48.5 3.8 56 191-246 89-150 (321)
183 PRK13255 thiopurine S-methyltr 85.7 1.2 2.6E-05 44.3 4.9 35 209-245 36-70 (218)
184 PF03291 Pox_MCEL: mRNA cappin 85.6 0.39 8.5E-06 50.9 1.5 31 210-245 62-96 (331)
185 KOG1540|consensus 85.5 0.65 1.4E-05 48.3 2.9 58 209-266 99-172 (296)
186 PF05401 NodS: Nodulation prot 84.7 0.82 1.8E-05 45.7 3.2 31 212-244 45-75 (201)
187 PF10294 Methyltransf_16: Puta 84.7 1.9 4.1E-05 41.1 5.6 52 193-244 22-79 (173)
188 TIGR01177 conserved hypothetic 84.4 2.6 5.7E-05 44.0 6.9 57 20-78 247-303 (329)
189 PF13679 Methyltransf_32: Meth 84.3 2.1 4.6E-05 39.2 5.5 39 206-244 21-63 (141)
190 PHA03412 putative methyltransf 83.3 0.83 1.8E-05 46.8 2.6 36 211-246 50-88 (241)
191 PF03602 Cons_hypoth95: Conser 83.1 1.3 2.8E-05 43.0 3.7 36 209-245 41-76 (183)
192 TIGR02469 CbiT precorrin-6Y C5 83.0 1.9 4E-05 36.9 4.3 20 50-69 103-122 (124)
193 KOG3673|consensus 83.0 0.59 1.3E-05 52.7 1.5 54 173-231 218-288 (845)
194 PF08704 GCD14: tRNA methyltra 82.2 1.3 2.9E-05 45.2 3.6 37 208-244 38-75 (247)
195 PLN02823 spermine synthase 82.0 2.9 6.4E-05 44.5 6.2 86 19-110 174-267 (336)
196 KOG2899|consensus 81.5 1.4 2.9E-05 45.8 3.3 36 210-245 58-93 (288)
197 COG0421 SpeE Spermidine syntha 81.4 5.2 0.00011 41.8 7.6 85 21-112 149-238 (282)
198 PF11861 DUF3381: Domain of un 81.1 7.3 0.00016 37.5 7.9 19 268-286 82-100 (159)
199 KOG1270|consensus 80.7 1.4 3.1E-05 45.9 3.2 33 211-245 90-122 (282)
200 COG2813 RsmC 16S RNA G1207 met 80.5 2 4.3E-05 45.4 4.2 43 203-246 152-194 (300)
201 PF05206 TRM13: Methyltransfer 80.4 2.8 6.2E-05 43.2 5.3 46 198-243 6-56 (259)
202 KOG0820|consensus 80.4 1.9 4.1E-05 45.4 4.0 35 208-244 56-90 (315)
203 TIGR02143 trmA_only tRNA (urac 80.3 1.4 3.1E-05 46.8 3.1 31 212-244 199-229 (353)
204 PLN02672 methionine S-methyltr 80.1 1.3 2.8E-05 53.9 3.0 36 210-245 118-153 (1082)
205 COG2518 Pcm Protein-L-isoaspar 79.7 2 4.3E-05 43.2 3.7 34 208-243 70-103 (209)
206 TIGR00417 speE spermidine synt 79.6 1.7 3.7E-05 44.2 3.4 35 210-244 72-106 (270)
207 TIGR03534 RF_mod_PrmC protein- 79.4 8.8 0.00019 37.4 8.1 51 47-98 195-246 (251)
208 PF10672 Methyltrans_SAM: S-ad 79.1 1.9 4.2E-05 45.0 3.6 35 209-244 122-156 (286)
209 cd02440 AdoMet_MTases S-adenos 79.0 3.1 6.6E-05 32.8 4.0 40 19-68 64-103 (107)
210 KOG3191|consensus 77.9 3.2 6.9E-05 41.5 4.5 36 211-246 44-80 (209)
211 PRK03612 spermidine synthase; 77.6 4.6 0.0001 45.2 6.2 81 20-110 372-459 (521)
212 COG2890 HemK Methylase of poly 76.7 1.9 4.1E-05 44.6 2.7 33 213-245 113-145 (280)
213 COG0500 SmtA SAM-dependent met 76.6 2.7 5.8E-05 33.6 3.0 30 214-244 52-82 (257)
214 PRK14968 putative methyltransf 76.2 23 0.0005 32.7 9.6 44 48-91 127-170 (188)
215 KOG1975|consensus 76.1 7.3 0.00016 42.1 6.8 91 19-129 194-284 (389)
216 PRK05031 tRNA (uracil-5-)-meth 76.0 2.2 4.8E-05 45.4 3.1 33 211-245 207-239 (362)
217 PRK04338 N(2),N(2)-dimethylgua 75.5 3 6.5E-05 45.1 4.0 36 210-245 57-92 (382)
218 PF08123 DOT1: Histone methyla 75.4 4.7 0.0001 40.1 5.0 44 201-245 34-77 (205)
219 PRK03612 spermidine synthase; 75.4 2.6 5.7E-05 47.1 3.6 36 209-244 296-331 (521)
220 PF12847 Methyltransf_18: Meth 75.3 2.9 6.3E-05 35.4 3.1 41 20-67 69-109 (112)
221 PRK09489 rsmC 16S ribosomal RN 74.8 9.1 0.0002 40.8 7.3 64 20-92 260-323 (342)
222 TIGR00537 hemK_rel_arch HemK-r 74.0 16 0.00035 34.3 8.1 46 47-92 118-163 (179)
223 PRK00377 cbiT cobalt-precorrin 73.9 8.3 0.00018 37.1 6.2 51 50-100 126-176 (198)
224 KOG1975|consensus 73.8 2 4.3E-05 46.2 2.0 32 209-245 116-151 (389)
225 KOG2651|consensus 73.6 3.6 7.7E-05 45.2 3.8 43 200-243 143-185 (476)
226 TIGR00446 nop2p NOL1/NOP2/sun 73.1 7.5 0.00016 39.5 5.9 48 20-67 139-197 (264)
227 PRK00517 prmA ribosomal protei 72.0 12 0.00025 37.6 6.9 41 50-90 194-235 (250)
228 PRK05327 rpsD 30S ribosomal pr 71.4 1.9 4.2E-05 42.7 1.2 39 192-230 146-185 (203)
229 PRK11873 arsM arsenite S-adeno 71.1 5.8 0.00013 39.8 4.6 39 19-68 144-182 (272)
230 PF13659 Methyltransf_26: Meth 71.0 4.6 0.0001 34.6 3.3 50 15-67 64-113 (117)
231 KOG1500|consensus 70.5 3.9 8.4E-05 44.4 3.3 38 208-246 175-212 (517)
232 PLN02366 spermidine synthase 70.4 5.8 0.00012 41.8 4.5 46 199-244 78-125 (308)
233 KOG1661|consensus 70.3 3 6.6E-05 42.4 2.3 39 206-244 78-118 (237)
234 COG2519 GCD14 tRNA(1-methylade 69.3 5.1 0.00011 41.5 3.8 50 190-244 79-129 (256)
235 COG0030 KsgA Dimethyladenosine 67.0 8.4 0.00018 40.0 4.8 33 209-243 29-61 (259)
236 KOG1271|consensus 66.6 5.4 0.00012 40.1 3.1 55 210-264 67-129 (227)
237 PRK10258 biotin biosynthesis p 66.5 12 0.00027 36.9 5.8 54 20-84 102-155 (251)
238 PRK13256 thiopurine S-methyltr 65.6 4.5 9.8E-05 40.9 2.5 36 209-246 42-77 (226)
239 KOG2904|consensus 65.2 5.8 0.00013 42.0 3.2 36 211-246 149-184 (328)
240 PLN02781 Probable caffeoyl-CoA 64.7 6.6 0.00014 39.3 3.4 36 209-244 67-103 (234)
241 TIGR02072 BioC biotin biosynth 64.7 15 0.00033 35.0 5.8 49 20-79 97-145 (240)
242 PF01269 Fibrillarin: Fibrilla 63.6 8.7 0.00019 39.3 4.1 37 208-244 71-108 (229)
243 PRK15001 SAM-dependent 23S rib 63.6 22 0.00047 38.7 7.3 64 20-92 297-360 (378)
244 PF02384 N6_Mtase: N-6 DNA Met 63.1 8.8 0.00019 39.3 4.1 39 207-245 43-88 (311)
245 PF03141 Methyltransf_29: Puta 62.6 9.8 0.00021 42.9 4.5 55 156-231 81-138 (506)
246 KOG3010|consensus 62.4 6.4 0.00014 40.8 2.9 31 212-244 35-65 (261)
247 PF08241 Methyltransf_11: Meth 62.3 4.1 8.9E-05 32.8 1.3 19 49-67 77-95 (95)
248 PRK08287 cobalt-precorrin-6Y C 61.9 22 0.00047 33.7 6.2 56 21-90 97-153 (187)
249 COG1041 Predicted DNA modifica 61.9 20 0.00043 38.8 6.5 84 18-107 261-344 (347)
250 TIGR02752 MenG_heptapren 2-hep 61.5 18 0.00039 35.1 5.7 30 50-79 132-161 (231)
251 PRK01581 speE spermidine synth 61.1 6.3 0.00014 42.9 2.7 35 210-244 150-184 (374)
252 TIGR00006 S-adenosyl-methyltra 60.6 15 0.00032 39.0 5.3 46 200-246 11-56 (305)
253 PF05958 tRNA_U5-meth_tr: tRNA 60.0 9.7 0.00021 40.6 3.8 45 197-244 184-228 (352)
254 COG0742 N6-adenine-specific me 59.9 8.8 0.00019 38.1 3.3 39 205-244 34-76 (187)
255 PRK12428 3-alpha-hydroxysteroi 59.6 36 0.00078 33.2 7.5 30 1-31 29-58 (241)
256 PF05185 PRMT5: PRMT5 arginine 58.4 9.3 0.0002 42.3 3.5 36 210-245 186-225 (448)
257 PF06962 rRNA_methylase: Putat 58.0 8.8 0.00019 36.4 2.8 63 21-85 46-113 (140)
258 PF00107 ADH_zinc_N: Zinc-bind 57.3 12 0.00027 32.5 3.5 49 7-72 44-92 (130)
259 COG4976 Predicted methyltransf 57.0 10 0.00022 39.4 3.2 45 197-244 113-157 (287)
260 COG0144 Sun tRNA and rRNA cyto 56.4 21 0.00047 38.1 5.7 65 21-85 229-307 (355)
261 COG1092 Predicted SAM-dependen 56.1 27 0.00058 38.3 6.5 76 7-84 275-352 (393)
262 PRK14967 putative methyltransf 55.9 55 0.0012 32.1 8.1 64 19-84 99-174 (223)
263 PRK14904 16S rRNA methyltransf 55.1 22 0.00047 39.0 5.6 65 20-85 317-396 (445)
264 KOG1540|consensus 54.6 17 0.00037 38.2 4.4 41 49-89 194-234 (296)
265 PLN02781 Probable caffeoyl-CoA 52.1 20 0.00044 35.9 4.4 34 20-67 143-176 (234)
266 KOG4022|consensus 52.1 33 0.00071 34.2 5.7 60 8-67 59-127 (236)
267 PF05724 TPMT: Thiopurine S-me 52.1 19 0.00041 36.0 4.2 37 208-246 35-71 (218)
268 PF04889 Cwf_Cwc_15: Cwf15/Cwc 51.9 38 0.00082 34.9 6.4 29 312-340 144-172 (244)
269 PRK14903 16S rRNA methyltransf 51.7 29 0.00064 38.0 6.0 65 20-84 306-384 (431)
270 TIGR00138 gidB 16S rRNA methyl 50.5 31 0.00066 33.3 5.3 32 52-84 125-156 (181)
271 PRK11036 putative S-adenosyl-L 50.3 20 0.00043 35.8 4.1 21 50-70 130-150 (255)
272 COG0220 Predicted S-adenosylme 50.1 16 0.00035 37.0 3.4 32 212-243 50-81 (227)
273 COG4798 Predicted methyltransf 50.0 14 0.00031 37.5 2.9 31 208-238 46-76 (238)
274 KOG2920|consensus 49.5 14 0.00029 39.0 2.8 42 201-243 105-148 (282)
275 KOG1541|consensus 49.1 9.6 0.00021 39.4 1.6 32 211-244 51-82 (270)
276 PRK15128 23S rRNA m(5)C1962 me 49.0 37 0.0008 37.0 6.2 64 19-84 291-355 (396)
277 PRK11933 yebU rRNA (cytosine-C 49.0 29 0.00062 38.9 5.4 65 21-85 183-261 (470)
278 KOG0024|consensus 48.7 15 0.00033 39.6 3.1 38 208-245 167-205 (354)
279 PRK11805 N5-glutamine S-adenos 48.5 32 0.00069 36.1 5.4 26 46-71 240-265 (307)
280 PLN02476 O-methyltransferase 48.2 20 0.00044 37.5 3.9 36 209-244 117-153 (278)
281 PHA01634 hypothetical protein 47.7 26 0.00055 33.6 4.0 42 202-244 19-61 (156)
282 TIGR00536 hemK_fam HemK family 47.4 58 0.0013 33.3 7.0 58 47-109 222-281 (284)
283 TIGR03533 L3_gln_methyl protei 47.1 30 0.00066 35.7 4.9 37 46-84 228-264 (284)
284 PRK00107 gidB 16S rRNA methylt 46.5 27 0.00059 34.0 4.3 38 20-72 111-148 (187)
285 PF01795 Methyltransf_5: MraW 46.0 30 0.00066 36.8 4.8 39 208-246 18-56 (310)
286 PRK14966 unknown domain/N5-glu 45.4 1.4E+02 0.0031 33.2 9.9 58 48-111 360-419 (423)
287 PRK11783 rlmL 23S rRNA m(2)G24 44.3 41 0.00089 39.2 6.0 48 19-67 606-654 (702)
288 COG3897 Predicted methyltransf 44.0 12 0.00027 37.8 1.5 72 209-282 78-170 (218)
289 KOG2187|consensus 43.7 22 0.00048 40.3 3.5 47 197-245 370-416 (534)
290 PRK01683 trans-aconitate 2-met 43.7 30 0.00066 34.3 4.2 41 20-71 92-132 (258)
291 PRK08317 hypothetical protein; 43.4 29 0.00063 32.9 3.9 17 51-67 106-122 (241)
292 TIGR01934 MenG_MenH_UbiE ubiqu 42.0 39 0.00084 32.0 4.5 25 50-74 124-148 (223)
293 TIGR00080 pimt protein-L-isoas 41.8 26 0.00055 34.2 3.3 14 55-68 163-176 (215)
294 PF09445 Methyltransf_15: RNA 40.3 30 0.00066 33.5 3.5 32 212-245 1-32 (163)
295 TIGR00308 TRM1 tRNA(guanine-26 40.1 27 0.00059 37.9 3.4 35 211-245 45-80 (374)
296 PRK14103 trans-aconitate 2-met 40.0 37 0.0008 33.8 4.2 42 20-72 88-129 (255)
297 smart00138 MeTrc Methyltransfe 39.9 34 0.00073 34.9 3.9 20 48-67 221-240 (264)
298 KOG1596|consensus 39.5 22 0.00048 37.2 2.5 38 21-71 226-263 (317)
299 COG2265 TrmA SAM-dependent met 39.2 27 0.00059 38.6 3.3 47 197-245 280-326 (432)
300 PF04989 CmcI: Cephalosporin h 38.6 21 0.00046 35.9 2.2 53 211-264 33-96 (206)
301 PLN02490 MPBQ/MSBQ methyltrans 38.3 1.3E+02 0.0028 32.4 8.1 37 20-67 177-213 (340)
302 COG4076 Predicted RNA methylas 38.1 29 0.00062 35.3 3.0 32 212-245 34-65 (252)
303 TIGR02987 met_A_Alw26 type II 37.9 26 0.00056 39.1 3.0 36 210-245 31-74 (524)
304 PF04977 DivIC: Septum formati 37.4 1.2E+02 0.0026 24.6 6.2 45 318-362 28-73 (80)
305 PF13847 Methyltransf_31: Meth 37.4 17 0.00038 33.0 1.3 41 20-71 72-112 (152)
306 COG0421 SpeE Spermidine syntha 36.7 48 0.001 34.7 4.5 33 212-244 78-110 (282)
307 COG4123 Predicted O-methyltran 35.9 1.5E+02 0.0032 30.9 7.7 91 19-113 113-213 (248)
308 PF13578 Methyltransf_24: Meth 35.4 34 0.00073 29.2 2.7 37 19-67 67-103 (106)
309 PF10672 Methyltrans_SAM: S-ad 35.4 46 0.00099 35.0 4.1 54 9-67 183-236 (286)
310 PRK05134 bifunctional 3-demeth 35.0 45 0.00097 32.5 3.8 22 50-71 132-153 (233)
311 PLN02232 ubiquinone biosynthes 34.8 90 0.002 29.2 5.6 24 50-73 62-85 (160)
312 PF01209 Ubie_methyltran: ubiE 34.6 33 0.00072 34.5 2.9 46 50-98 134-179 (233)
313 PTZ00098 phosphoethanolamine N 33.8 49 0.0011 33.6 4.0 21 50-70 137-157 (263)
314 KOG2915|consensus 33.5 51 0.0011 35.1 4.0 37 208-244 103-140 (314)
315 COG1889 NOP1 Fibrillarin-like 33.5 45 0.00097 34.1 3.5 36 208-243 74-109 (231)
316 COG2520 Predicted methyltransf 33.4 36 0.00078 36.7 3.0 39 207-246 185-223 (341)
317 cd00315 Cyt_C5_DNA_methylase C 33.3 38 0.00082 34.7 3.1 33 212-245 1-33 (275)
318 PF01555 N6_N4_Mtase: DNA meth 32.7 58 0.0013 30.6 4.0 34 209-244 190-223 (231)
319 PRK07402 precorrin-6B methylas 32.5 57 0.0012 31.2 4.0 49 49-97 122-171 (196)
320 TIGR03704 PrmC_rel_meth putati 32.2 1.3E+02 0.0029 30.4 6.8 36 48-84 195-230 (251)
321 PHA02571 a-gt.4 hypothetical p 31.7 1.5E+02 0.0032 27.4 6.1 40 316-355 13-52 (109)
322 PRK13942 protein-L-isoaspartat 31.7 47 0.001 32.6 3.3 13 56-68 163-175 (212)
323 PF01170 UPF0020: Putative RNA 31.5 57 0.0012 31.3 3.8 37 208-244 26-71 (179)
324 PF04931 DNA_pol_phi: DNA poly 31.4 1.1E+02 0.0023 36.3 6.7 26 186-211 296-321 (784)
325 PLN02244 tocopherol O-methyltr 30.5 65 0.0014 34.1 4.3 21 50-70 204-224 (340)
326 PLN02476 O-methyltransferase 29.8 1E+02 0.0022 32.3 5.6 34 20-67 193-226 (278)
327 PRK00312 pcm protein-L-isoaspa 29.6 58 0.0013 31.4 3.6 16 55-70 161-176 (212)
328 PRK06953 short chain dehydroge 29.0 1.8E+02 0.004 27.6 6.8 31 1-31 50-80 (222)
329 PRK11088 rrmA 23S rRNA methylt 28.7 1.1E+02 0.0023 31.1 5.4 17 55-71 167-183 (272)
330 PF01269 Fibrillarin: Fibrilla 28.3 43 0.00094 34.4 2.5 36 21-69 143-178 (229)
331 PRK00121 trmB tRNA (guanine-N( 28.2 82 0.0018 30.6 4.3 21 49-69 136-156 (202)
332 PLN02233 ubiquinone biosynthes 28.1 1.3E+02 0.0028 30.5 5.9 25 50-74 163-187 (261)
333 PRK12746 short chain dehydroge 27.8 2.5E+02 0.0055 27.0 7.7 32 1-32 62-101 (254)
334 PHA03108 poly(A) polymerase sm 27.7 70 0.0015 34.0 3.9 41 204-245 55-99 (300)
335 PRK07578 short chain dehydroge 27.6 2.1E+02 0.0047 26.7 6.9 28 2-31 38-65 (199)
336 TIGR03439 methyl_EasF probable 27.6 81 0.0017 33.6 4.4 37 208-244 74-114 (319)
337 PLN02668 indole-3-acetate carb 27.5 44 0.00095 36.7 2.5 22 210-231 63-84 (386)
338 PF00145 DNA_methylase: C-5 cy 27.3 49 0.0011 33.2 2.7 33 212-245 1-33 (335)
339 TIGR02209 ftsL_broad cell divi 27.0 2.3E+02 0.005 23.5 6.3 21 342-362 59-79 (85)
340 KOG2198|consensus 26.8 67 0.0014 35.3 3.7 87 20-108 235-343 (375)
341 TIGR00091 tRNA (guanine-N(7)-) 26.6 76 0.0017 30.5 3.8 37 49-85 112-148 (194)
342 PRK06128 oxidoreductase; Provi 26.1 2.5E+02 0.0054 28.4 7.5 31 1-31 112-144 (300)
343 COG0623 FabI Enoyl-[acyl-carri 25.3 1.8E+02 0.0039 30.5 6.2 73 1-73 62-148 (259)
344 smart00828 PKS_MT Methyltransf 25.2 60 0.0013 31.3 2.8 21 50-70 85-105 (224)
345 PRK11207 tellurite resistance 24.8 1.1E+02 0.0025 29.4 4.6 22 49-70 114-135 (197)
346 PF01596 Methyltransf_3: O-met 24.2 87 0.0019 31.1 3.7 36 209-244 44-80 (205)
347 PRK08177 short chain dehydroge 24.1 2.2E+02 0.0049 27.1 6.5 29 2-30 52-80 (225)
348 cd08283 FDH_like_1 Glutathione 24.1 73 0.0016 33.6 3.4 36 208-243 182-218 (386)
349 PF03492 Methyltransf_7: SAM d 23.9 52 0.0011 35.0 2.2 23 209-231 15-37 (334)
350 COG0357 GidB Predicted S-adeno 23.8 61 0.0013 32.8 2.6 19 211-229 68-86 (215)
351 PF01234 NNMT_PNMT_TEMT: NNMT/ 23.8 44 0.00095 34.6 1.6 27 196-222 41-68 (256)
352 PRK00888 ftsB cell division pr 23.6 3E+02 0.0065 24.8 6.7 19 344-362 65-83 (105)
353 PRK08267 short chain dehydroge 23.3 3.1E+02 0.0067 26.6 7.4 32 1-32 54-88 (260)
354 COG4627 Uncharacterized protei 22.8 77 0.0017 31.4 2.9 25 48-72 65-89 (185)
355 TIGR03451 mycoS_dep_FDH mycoth 22.4 1.7E+02 0.0036 30.4 5.6 45 9-70 233-277 (358)
356 PF07757 AdoMet_MTase: Predict 22.3 1.1E+02 0.0023 28.5 3.5 70 165-244 21-90 (112)
357 PRK11705 cyclopropane fatty ac 21.9 96 0.0021 33.6 3.8 22 50-71 248-269 (383)
358 PF01555 N6_N4_Mtase: DNA meth 21.8 96 0.0021 29.2 3.4 50 45-94 32-87 (231)
359 KOG4300|consensus 21.5 61 0.0013 33.4 2.0 50 194-244 58-109 (252)
360 PRK05693 short chain dehydroge 21.5 2.8E+02 0.006 27.4 6.7 32 2-33 51-84 (274)
361 COG0275 Predicted S-adenosylme 21.4 1.1E+02 0.0023 32.9 3.9 38 208-245 21-59 (314)
362 PF02527 GidB: rRNA small subu 21.4 1.9E+02 0.004 28.4 5.3 31 213-243 51-81 (184)
363 PLN02823 spermine synthase 21.3 83 0.0018 33.7 3.1 34 211-244 104-137 (336)
364 COG1422 Predicted membrane pro 21.1 1.9E+02 0.0042 29.3 5.4 41 476-520 70-110 (201)
365 COG0275 Predicted S-adenosylme 21.0 1.4E+02 0.003 32.2 4.6 35 48-82 223-257 (314)
366 PRK10742 putative methyltransf 20.9 1E+02 0.0023 32.0 3.6 35 209-245 85-121 (250)
367 TIGR01983 UbiG ubiquinone bios 20.8 1.9E+02 0.004 27.8 5.2 22 50-71 130-151 (224)
368 PRK00216 ubiE ubiquinone/menaq 20.8 2.3E+02 0.0049 27.1 5.8 25 50-74 139-163 (239)
369 COG2521 Predicted archaeal met 20.6 1.3E+02 0.0029 31.6 4.2 36 208-244 132-167 (287)
370 PF05050 Methyltransf_21: Meth 20.2 86 0.0019 28.0 2.6 30 216-245 1-34 (167)
371 PF04672 Methyltransf_19: S-ad 20.1 1E+02 0.0023 32.3 3.5 67 212-278 70-150 (267)
372 PRK06505 enoyl-(acyl carrier p 20.1 2.8E+02 0.0061 27.8 6.5 31 1-31 63-95 (271)
373 TIGR00477 tehB tellurite resis 20.1 1.2E+02 0.0026 29.3 3.7 18 50-67 114-131 (195)
No 1
>KOG1098|consensus
Probab=100.00 E-value=4.5e-100 Score=816.67 Aligned_cols=469 Identities=43% Similarity=0.683 Sum_probs=394.7
Q ss_pred CCCCCChHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHH
Q psy3133 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~ 80 (547)
|+|||+..|+..|+.+++.|++|||||||||||||+|.+|+|.|++|++.||.||+++|+.|||||+|||++.+|+.|+|
T Consensus 90 v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~ 169 (780)
T KOG1098|consen 90 VEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLR 169 (780)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCeEEEecCCCCCCCCceEEEEEeeccCCCCCCcccCChhhhhhhccccccchhhhcccccccccCccccCCCce
Q psy3133 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFFDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNV 160 (547)
Q Consensus 81 ~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~p~~idp~llD~k~vF~e~~~~~~~~~~~~~~~~kk~~~~GY~~~~~~ 160 (547)
+|.|||.+|+++||+|||+.|+||||||.||++|.++||+++||++||+++.......+.+|+|++++|. +||++|+++
T Consensus 170 v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~vf~e~~~~a~~~~~~l~~eKkkr~-eGY~~~d~~ 248 (780)
T KOG1098|consen 170 VFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKLVFEEFPDGAKKQVKLLGPEKKKRA-EGYEDDDLA 248 (780)
T ss_pred HHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHHHHhhcccccccchhhcCccccccc-cCcccchHH
Confidence 9999999999999999999999999999999999999999999999999988666788999999988877 999999999
Q ss_pred eeeccccccccccCChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEee
Q psy3133 161 LYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHF 240 (547)
Q Consensus 161 l~~~~ss~~fi~~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~v 240 (547)
||+..++.+|+...+|+.+++..+ .|.|
T Consensus 249 L~~~~satdFlrsenpld~Lg~~~----------------------------------------------------~I~i 276 (780)
T KOG1098|consen 249 LHKTLSATDFLRSENPLDILGTAN----------------------------------------------------EITI 276 (780)
T ss_pred HHHHhHHHHHHhhcCHHHHHhccc----------------------------------------------------eEEe
Confidence 999999999999999999888877 8999
Q ss_pred cccccccCCCcchhHHHhhccccccCHHHHHhhhhHHHHHhHHhhhhhhhhhhcCCCCcccccccccccchHHHHHHHHH
Q psy3133 241 DDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKAT 320 (547)
Q Consensus 241 D~~~~~~~p~~~~~i~~~~~Di~vl~~~~~r~LlkWr~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 320 (547)
|...+..|+.||++|..||.|++|||+++|+.||+||+.|++.+... .+... .+..++++.++++ +++|+
T Consensus 277 DDe~~~nh~~TTeEi~~cc~DLkVLGkkd~r~iLrWRk~ire~l~~~----~~v~~--~e~~e~e~~plte----Eeeld 346 (780)
T KOG1098|consen 277 DDEEWKNHKKTTEEILECCKDLKVLGKKDFRVILRWRKKIRETLGEQ----KKVVD--GEADEVEEEPLTE----EEELD 346 (780)
T ss_pred CCHHHhcCccCcHHHHHHHHHhhhhChHHHHHHHHHHHHHHHHhccc----ccccc--ccccccccCCCcH----HHHHH
Confidence 98888789999999999999999999999999999999999998543 11111 1112222344554 44799
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCCCCCCCCCcccccccccccChhhhhHhhhCCCCccCCCcc
Q psy3133 321 KEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDE 400 (547)
Q Consensus 321 ~e~~~~~~~~~~~~kr~kkk~~~~~~k~~~r~~l~m~~~~d~~~~~~~~~~~F~l~~i~~~~~l~~~~~~~~~~~~~~~~ 400 (547)
+.|++|.+.+++.+||+|||.++.++|+++||+|+|.+|||+|+..+ +.+||+|++|++++.|..|+++.+ ++|++.
T Consensus 347 ~~l~~l~E~e~~~lkRkkkk~~k~k~k~~~r~~l~m~~~gd~g~~~e-e~elF~L~~ir~~~~L~el~~~~~--avD~e~ 423 (780)
T KOG1098|consen 347 KLLAELSEDEKAALKRKKKKALKAKAKELERMELKMIIPGDIGPEAE-EQELFSLKTIRKSKELAELTKDTQ--AVDEEL 423 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhh-hhhHHHHHHHhcchhHHHHhcCCc--CCChhh
Confidence 99999999999999999999999999999999999999999999865 889999999999999999999999 224443
Q ss_pred hhcccccccccccccCCcCCCCCCccCCCCCCCcc----------------------------CCCCCc-----------
Q psy3133 401 EHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLE----------------------------FESSSE----------- 441 (547)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~----------- 441 (547)
. ..+...+|.++ + |.+..|.+|.|+..++ |++.++
T Consensus 424 ~---~d~~~~~d~~d-~--De~~~l~sdld~~~~~y~~~~~e~~~~~r~~~~~~~~~eee~~gl~e~d~de~~~ie~~~~ 497 (780)
T KOG1098|consen 424 S---EDGDSDIDESD-E--DEDDGLNSDLDEMELDYTERRDESEMKKRAKKAEGQIEEEEWSGLEEGDEDEKNAIEKNGR 497 (780)
T ss_pred h---ccCCccccccc-c--ccccccccchhhhHhhhhhhhhHHHHHHHhhhhhhhhhhhhhcCCccccchhhhhhhhccc
Confidence 2 22223333332 1 1112233333322211 111000
Q ss_pred --cchhhhh--cc-----------------------------------------------cc------------------
Q psy3133 442 --DENDVEK--KL-----------------------------------------------VE------------------ 452 (547)
Q Consensus 442 --~~~~~~~--~~-----------------------------------------------~~------------------ 452 (547)
+.++.++ ++ +.
T Consensus 498 e~~se~~~~~~~~~dk~~~kegk~~~~f~~~if~~ed~d~~~e~s~~~~~~~~~~~~e~l~~~d~~~d~~de~~~~~~E~ 577 (780)
T KOG1098|consen 498 EKKSENDELTVSFDDKKGKKEGKARMWFEDDIFNNEDADEGTEDSESSDAEMKKKKKEKLSKSDDDIDKSDEDEEERYED 577 (780)
T ss_pred cccccccccccchhhcccchhhhccccccCccccccccccccccccchHHHHhhhhhhhcCcccccccccchhhhhhccc
Confidence 0000000 00 00
Q ss_pred --------c---cCCCh-------------hHHHHHHHHhhhcc--------CCC-------------------------
Q psy3133 453 --------E---EFDTD-------------EEDGLGKLLRYWEK--------SYN------------------------- 475 (547)
Q Consensus 453 --------~---~~~~~-------------~~~~l~~~~~~~~k--------~~n------------------------- 475 (547)
+ +.|+| ++||||++|++|+| |||
T Consensus 578 ~~~~s~se~~d~~~dsd~~~~~~k~~~lt~E~mal~~~~a~~kK~r~dliDea~NRyaf~dE~LP~WF~dDEk~h~~~~k 657 (780)
T KOG1098|consen 578 LPNSSASESCDADIDSDSLKPVEKKRILTPEEMALGAQMARSKKARRDLIDEAWNRYAFNDEGLPDWFVDDEKQHYKKQK 657 (780)
T ss_pred cccccccccccccccccccCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccchHHHhhHHHhccCCC
Confidence 0 11111 23699999999999 777
Q ss_pred --hHHHHHHHHHHHhhhhCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhccc
Q psy3133 476 --AASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIRAP 541 (547)
Q Consensus 476 --tke~~~~~k~k~~~in~RpiKKv~EAkaRKK~r~~~klek~kkka~~i~~~~~~~~~eK~~~i~~~ 541 (547)
|||+|++||+||++|||||||||+||||||||||++|||+++|||++|+++.|||++||+++|++|
T Consensus 658 PvtKe~v~a~rer~keiNARPiKKVaEAkARKkrra~kRLek~kKKAe~I~d~~d~te~eK~kei~kl 725 (780)
T KOG1098|consen 658 PVTKEEVAAYRERMKEINARPIKKVAEAKARKKRRAQKRLEKVKKKAELISDTSDITEREKAKEIKKL 725 (780)
T ss_pred CCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.5e-30 Score=250.75 Aligned_cols=114 Identities=38% Similarity=0.507 Sum_probs=112.4
Q ss_pred CCCCCChHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHH
Q psy3133 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~ 80 (547)
|||||++.|.+.|...++++++|||+||||||++|+|..||+.++.||..|+.+|..+|++||+||+|+|+|.+++.+++
T Consensus 91 q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~ 170 (205)
T COG0293 91 QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK 170 (205)
T ss_pred eeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCeEEEecCCCCCCCCceEEEEEeeccCC
Q psy3133 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114 (547)
Q Consensus 81 ~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~p 114 (547)
.++++|++|+++||.|||++|+|+|+||.+|+++
T Consensus 171 ~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 171 ALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred HHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 9999999999999999999999999999999975
No 3
>KOG1099|consensus
Probab=99.96 E-value=9.2e-30 Score=250.61 Aligned_cols=126 Identities=37% Similarity=0.535 Sum_probs=122.4
Q ss_pred CCCCCChHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHH
Q psy3133 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~ 80 (547)
|||||.+.|.+.|.+++++.++|+|+|||||+|||.|+.|+|.|.+|.++||.+++.+|++||+||.|+|||.++..|..
T Consensus 95 q~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLys 174 (294)
T KOG1099|consen 95 QGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYS 174 (294)
T ss_pred ecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCeEEEecCCCCCCCCceEEEEEeeccCCCCCCcccCChhh
Q psy3133 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFFDPKY 126 (547)
Q Consensus 81 ~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~p~~idp~llD~k~ 126 (547)
.|+.+|++|...||.|||+.|-|.|+||.||-.|..+.|.+..|.+
T Consensus 175 ql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~~ 220 (294)
T KOG1099|consen 175 QLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPLG 220 (294)
T ss_pred HHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCccc
Confidence 9999999999999999999999999999999999999998865543
No 4
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=99.96 E-value=1.4e-28 Score=231.56 Aligned_cols=157 Identities=46% Similarity=0.667 Sum_probs=131.7
Q ss_pred hcccccccccCccccCCCceeeeccccccccccCChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCC
Q psy3133 141 LKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAA 220 (547)
Q Consensus 141 ~~~~~~kk~~~~GY~~~~~~l~~~~ss~~fi~~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaa 220 (547)
||+|++|||+|+||++|++|||+.+|+++||.+.||+.+++..+
T Consensus 1 v~~p~kkKr~reGY~egd~tl~~~~~~~dFi~s~dpi~~L~~~~------------------------------------ 44 (159)
T PF11861_consen 1 VFKPEKKKRKREGYEEGDYTLYKTISASDFIKSEDPIDLLGSAN------------------------------------ 44 (159)
T ss_pred CCCCCCCCCCCCCcCCCCceeeeeccHHHHhcCCcHHHHHHHcC------------------------------------
Confidence 58899999999999999999999999999999999999999988
Q ss_pred CCchHHHHHHhhcCCeEEeecc--cccccCCCcchhHHHhhccccccCHHHHHhhhhHHHHHhHHhhhhhhhhhhcCCCC
Q psy3133 221 PGGWMQVAKQNMMASSIIHFDD--ESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEG 298 (547)
Q Consensus 221 PGgWsqva~~~~g~~~vv~vD~--~~~~~~p~~~~~i~~~~~Di~vl~~~~~r~LlkWr~~l~d~~~~~~~~~~~~~~~~ 298 (547)
.|.+|. .++..||.||++|..||.||+|||+++|+.|++||..|+..+....+.... .
T Consensus 45 ----------------~i~fdd~~~~i~~h~~TT~EIk~~c~DLKVLGk~d~k~LLKWR~kir~~~~~~~~~~~~----~ 104 (159)
T PF11861_consen 45 ----------------EIVFDDASKEILKHPLTTEEIKECCKDLKVLGKKDFKQLLKWRKKIRKELGKDKKEEEE----E 104 (159)
T ss_pred ----------------eeeecchHHHHHcCCCCcHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhHhhhcccc----c
Confidence 677766 677789999999999999999999999999999999999988654322211 1
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Q psy3133 299 EEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKML 357 (547)
Q Consensus 299 ~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~kr~kkk~~~~~~k~~~r~~l~m~ 357 (547)
++++..+.++++ ++++++++++++.+++.++.||++|+.+++++|...|++++|+
T Consensus 105 ~~~~~~e~~~~d----eee~~d~el~~~~e~~~~~~k~e~kk~~k~k~K~~~k~~~~m~ 159 (159)
T PF11861_consen 105 EEEEEEEVEEDD----EEEEIDEELEELQEKELAELKREKKKENKRKQKKILKEQLKMT 159 (159)
T ss_pred ccccccccCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111222233333 3566888888999999999999999999999999999999995
No 5
>KOG4589|consensus
Probab=99.94 E-value=3e-27 Score=227.26 Aligned_cols=112 Identities=33% Similarity=0.434 Sum_probs=110.6
Q ss_pred CCCChHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHH
Q psy3133 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIF 82 (547)
Q Consensus 3 DIt~~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~l 82 (547)
|||++.+...|.+.+.+++|||||||||||.||....||+.+++||.++|.+|+.+|.|+|+||||+|.|.+...|...|
T Consensus 118 dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l 197 (232)
T KOG4589|consen 118 DVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRL 197 (232)
T ss_pred ccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCeEEEecCCCCCCCCceEEEEEeeccCC
Q psy3133 83 KQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114 (547)
Q Consensus 83 kqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~p 114 (547)
..+|..|+.+||.|||.+|+|.|+||++|++.
T Consensus 198 ~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 198 QAVFTNVKKVKPDASRDESAETYLVCLNFKGN 229 (232)
T ss_pred HHHhhhcEeeCCccccccccceeeeeeeccCc
Confidence 99999999999999999999999999999975
No 6
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.92 E-value=9.2e-26 Score=211.22 Aligned_cols=111 Identities=37% Similarity=0.554 Sum_probs=98.5
Q ss_pred CCCCCChHHHHHHHHHhCC--CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHH
Q psy3133 1 MEDITTDKCRIAITRELKT--WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSL 78 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~--~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~L 78 (547)
+|||+++.+++.|...+.. .++|+|+|||+|+++|.+..|++.++.|++.+|.+|..+|++||+||+|+|++.+.+.+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 5899999999999888864 79999999999999999999999999999999999999999999999999999887899
Q ss_pred HHHHHcccCeEEEecCCCCCCCCceEEEEEeec
Q psy3133 79 LWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111 (547)
Q Consensus 79 l~~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gf 111 (547)
++.++++|++|+++||.+||+.|+|+|+||+||
T Consensus 149 ~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 149 IYLLKRCFSKVKIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp HHHHHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred HHHHHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence 999999999999999999999999999999998
No 7
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=99.91 E-value=7.2e-25 Score=214.60 Aligned_cols=85 Identities=46% Similarity=0.619 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHhhhcc--------CCC----------------------------hHHHHHHHHHHHhhhhCCcchhHH
Q psy3133 456 DTDEEDGLGKLLRYWEK--------SYN----------------------------AASLVNEYRKKRVEINVRPIRKVV 499 (547)
Q Consensus 456 ~~~~~~~l~~~~~~~~k--------~~n----------------------------tke~~~~~k~k~~~in~RpiKKv~ 499 (547)
.+-+.+|||++|+ ++| ||| |+|+|++||++|++||+||||||+
T Consensus 39 ~~ae~laLa~~m~-~kk~r~dlID~~yNRyaf~D~d~LP~WF~eDE~kH~k~~~Pvtke~v~~~k~k~~einaRPIKKV~ 117 (215)
T PF07780_consen 39 LTAEALALATKMI-SKKTRRDLIDDSYNRYAFNDDDGLPDWFVEDEKKHNKPQLPVTKEEVAEYKEKLREINARPIKKVA 117 (215)
T ss_pred cCHHHHHHHHHHh-hhhhHHHHHHhhccccccCCCCCCchhHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHcCCchHHHH
Confidence 3455579999999 777 777 999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhccc
Q psy3133 500 EAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNIRAP 541 (547)
Q Consensus 500 EAkaRKK~r~~~klek~kkka~~i~~~~~~~~~eK~~~i~~~ 541 (547)
|||||||+|+++||+++++||++|++++|||++||+++|++|
T Consensus 118 EAkaRKK~Ra~kklek~kkKa~~I~~~~d~se~eK~~~i~kl 159 (215)
T PF07780_consen 118 EAKARKKRRAAKKLEKAKKKAEAIADDEDMSEREKAKQIKKL 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986
No 8
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=5.9e-24 Score=207.28 Aligned_cols=112 Identities=33% Similarity=0.428 Sum_probs=93.3
Q ss_pred ccccccccc--CChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCe-EEeec
Q psy3133 165 LPVSKFIEH--ETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFD 241 (547)
Q Consensus 165 ~ss~~fi~~--~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~-vv~vD 241 (547)
.++..|+.+ .|||+..|+.. ||||||+|||+||+++|+||++|++||||||||||||||+++++++.+ |++||
T Consensus 2 ~~s~~wl~~~~~D~Y~~~Ak~~----gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavD 77 (205)
T COG0293 2 GSSQRWLAEHLRDPYYKKAKKE----GYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVD 77 (205)
T ss_pred cchHHHHHHhhcCHHHHHHhhc----cccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEE
Confidence 467889887 99999999988 999999999999999999999999999999999999999999998764 89999
Q ss_pred ccccccCCCcchhHHHhhccccc-cCHHHHHhhhhH---HHHHhHHh
Q psy3133 242 DESVLKHPSTTVEIQECCKDIRV-LGRKDVRNLLKW---WKVLHDEK 284 (547)
Q Consensus 242 ~~~~~~~p~~~~~i~~~~~Di~v-l~~~~~r~LlkW---r~~l~d~~ 284 (547)
++||. |.+. |.++++|++. -...++...+.- +.+++|.+
T Consensus 78 i~p~~--~~~~--V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 78 ILPMK--PIPG--VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred Ccccc--cCCC--ceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 99996 3333 8889999987 334444444443 44666665
No 9
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.88 E-value=5.6e-22 Score=192.46 Aligned_cols=113 Identities=28% Similarity=0.398 Sum_probs=108.5
Q ss_pred CCCCCChHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHH
Q psy3133 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~ 80 (547)
+|||++..+++.|...+...++|+|+||++|+++|.+..|...+..++..+|..+..+|+|||+||+|+|++..+..+++
T Consensus 97 ~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~ 176 (209)
T PRK11188 97 QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLR 176 (209)
T ss_pred ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHH
Confidence 58999999999999988888999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHcccCeEEEecCCCCCCCCceEEEEEeeccC
Q psy3133 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHYIA 113 (547)
Q Consensus 81 ~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~ 113 (547)
.++.+|.+|+++||.|||..|+|+|+||+||++
T Consensus 177 ~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 177 EIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred HHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 999999999999999999999999999999975
No 10
>KOG4589|consensus
Probab=99.86 E-value=6.3e-23 Score=197.64 Aligned_cols=95 Identities=31% Similarity=0.524 Sum_probs=82.4
Q ss_pred eecccccccccc--CChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCe-EE
Q psy3133 162 YKNLPVSKFIEH--ETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-II 238 (547)
Q Consensus 162 ~~~~ss~~fi~~--~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~-vv 238 (547)
|++.|.-.|+.+ .|||+..|+.. +|||||||||+||+++|+||+||.+|||+|||||+|||||.+++++.+ |+
T Consensus 23 ~rs~s~~~wl~Rql~Dpy~kkAkv~----NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~ 98 (232)
T KOG4589|consen 23 YRSKSLHRWLTRQLKDPYVKKAKVQ----NYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVL 98 (232)
T ss_pred cccccHHHHHHHhccCHHHHHHHHh----hhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEE
Confidence 677888899998 89999999988 999999999999999999999999999999999999999999997655 78
Q ss_pred eecccccccCCCcchhHHHhhc-cccc
Q psy3133 239 HFDDESVLKHPSTTVEIQECCK-DIRV 264 (547)
Q Consensus 239 ~vD~~~~~~~p~~~~~i~~~~~-Di~v 264 (547)
+||++++. +|.+ +..+|+ |++.
T Consensus 99 gVDllh~~-p~~G---a~~i~~~dvtd 121 (232)
T KOG4589|consen 99 GVDLLHIE-PPEG---ATIIQGNDVTD 121 (232)
T ss_pred EEeeeecc-CCCC---cccccccccCC
Confidence 99999984 3333 234454 7776
No 11
>KOG1098|consensus
Probab=99.73 E-value=1.4e-18 Score=189.30 Aligned_cols=96 Identities=44% Similarity=0.701 Sum_probs=79.7
Q ss_pred cCChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCe-EEeecccccccCCCc
Q psy3133 173 HETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESVLKHPST 251 (547)
Q Consensus 173 ~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~-vv~vD~~~~~~~p~~ 251 (547)
+.|.|..+|+.. ||||||||||++|+.+|+||.+++.|||||||||||.|||++.++.++ |||||+.||. |.+
T Consensus 11 r~Dk~Y~lAke~----GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--p~~ 84 (780)
T KOG1098|consen 11 RLDKYYRLAKEL----GYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--PIP 84 (780)
T ss_pred cchHHHHHHHHh----chhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--cCC
Confidence 578899999988 999999999999999999999999999999999999999999999876 5799999995 222
Q ss_pred chhHHHhhccccc-cCHHHHHhhhhH
Q psy3133 252 TVEIQECCKDIRV-LGRKDVRNLLKW 276 (547)
Q Consensus 252 ~~~i~~~~~Di~v-l~~~~~r~LlkW 276 (547)
.|..+..||+. -.+..++..++-
T Consensus 85 --~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 85 --NCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred --ccchhhhhhhHHHHHHHHHHHHHh
Confidence 24556667775 445566655543
No 12
>KOG1099|consensus
Probab=99.68 E-value=1.2e-17 Score=165.38 Aligned_cols=83 Identities=34% Similarity=0.597 Sum_probs=72.1
Q ss_pred CChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcC----C-----eEEeecccc
Q psy3133 174 ETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA----S-----SIIHFDDES 244 (547)
Q Consensus 174 ~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~----~-----~vv~vD~~~ 244 (547)
.|-|.++|+.+ |||+||||||++|++.|+||..-.+|||||||||+||||+++++.. + .+|+||++|
T Consensus 9 RDiYYRlAKe~----gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 9 RDIYYRLAKEN----GWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hHHHHHHHHhc----cchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 67888999999 9999999999999999999999999999999999999999999753 1 289999999
Q ss_pred cccCCCcchhHHHhhccccc
Q psy3133 245 VLKHPSTTVEIQECCKDIRV 264 (547)
Q Consensus 245 ~~~~p~~~~~i~~~~~Di~v 264 (547)
|. |+. -|..+++||+-
T Consensus 85 Ma--PI~--GV~qlq~DIT~ 100 (294)
T KOG1099|consen 85 MA--PIE--GVIQLQGDITS 100 (294)
T ss_pred CC--ccC--ceEEeecccCC
Confidence 96 433 25667777776
No 13
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.65 E-value=8.8e-17 Score=156.25 Aligned_cols=93 Identities=28% Similarity=0.379 Sum_probs=81.9
Q ss_pred cccccccccc--CChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcC-CeEEee
Q psy3133 164 NLPVSKFIEH--ETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHF 240 (547)
Q Consensus 164 ~~ss~~fi~~--~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~v 240 (547)
++++++|+.+ .|||+.+++.. |||+|++|||.||+++|+++++|.+|||||||||+|++++++++++ ..|++|
T Consensus 7 ~~~~~~~~~~~~~d~~~~~~~~~----~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aV 82 (209)
T PRK11188 7 SASSSRWLQEHFSDKYVQQAQKK----GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIAC 82 (209)
T ss_pred ccchHHHHHHhhcCHHHHHHhhc----CCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEE
Confidence 5688899998 69999999888 9999999999999999999999999999999999999999999875 468999
Q ss_pred cccccccCCCcchhHHHhhccccc
Q psy3133 241 DDESVLKHPSTTVEIQECCKDIRV 264 (547)
Q Consensus 241 D~~~~~~~p~~~~~i~~~~~Di~v 264 (547)
|+.+|. +.+ .|.++++|+..
T Consensus 83 Di~~~~--~~~--~v~~i~~D~~~ 102 (209)
T PRK11188 83 DILPMD--PIV--GVDFLQGDFRD 102 (209)
T ss_pred eccccc--CCC--CcEEEecCCCC
Confidence 999974 222 36778888876
No 14
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.65 E-value=7.8e-17 Score=151.02 Aligned_cols=71 Identities=37% Similarity=0.509 Sum_probs=58.4
Q ss_pred ccchhHHHHHHHHHhcCCcCCC--CeeeecCCCCCchHHHHHHhhc-CCeEEeecccccccCCCcchhHHHhhccccc
Q psy3133 190 YRSRAAFKLIQLNRKFEFLQKS--KVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDESVLKHPSTTVEIQECCKDIRV 264 (547)
Q Consensus 190 y~sRaa~KL~ei~~kf~l~~~g--~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~~~~~p~~~~~i~~~~~Di~v 264 (547)
|||||+|||.||+++|+++.+| .+|||||||||||||+++++.+ ...|+|||++++. |. +.+..+++|+..
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--~~--~~~~~i~~d~~~ 74 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--PL--QNVSFIQGDITN 74 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--S---TTEEBTTGGGEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc--cc--cceeeeecccch
Confidence 8999999999999999988776 9999999999999999999973 4468999999994 21 334556888866
No 15
>KOG3674|consensus
Probab=99.63 E-value=2.3e-16 Score=168.35 Aligned_cols=117 Identities=26% Similarity=0.394 Sum_probs=104.4
Q ss_pred CCCCCChHHHHHHHHHhC-CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcC--HHH
Q psy3133 1 MEDITTDKCRIAITRELK-TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKD--YTS 77 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~-~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d--~~~ 77 (547)
.|||.+-....-|.+.++ .+.||+|.+||+.++.|.+..++..-..|..+....|+.+|+.||+||+|+|+-.+ ...
T Consensus 205 tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~filKmft~fe~cS~~ 284 (696)
T KOG3674|consen 205 TGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFILKMFTFFEKCSRD 284 (696)
T ss_pred CccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHhhHH
Confidence 478887777766766432 35899999999999999999999888999999999999999999999999999865 578
Q ss_pred HHHHHHcccCeEEEecCCCCCCCCceEEEEEeeccCCCCC
Q psy3133 78 LLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKL 117 (547)
Q Consensus 78 Ll~~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~p~~i 117 (547)
|++.|...|..|+++||.+||++|+|+||||.||++.+.+
T Consensus 285 lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l 324 (696)
T KOG3674|consen 285 LMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDL 324 (696)
T ss_pred HHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccc
Confidence 9999999999999999999999999999999999876554
No 16
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.62 E-value=4.8e-15 Score=140.19 Aligned_cols=110 Identities=37% Similarity=0.561 Sum_probs=102.1
Q ss_pred CCCCChHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHH
Q psy3133 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWI 81 (547)
Q Consensus 2 GDIt~~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~ 81 (547)
+|+++..+...+...+...++|+|++|++|+.+|.|..++..+..+...+|..+..+|+|||.|++.+|+......++..
T Consensus 79 ~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~ 158 (188)
T TIGR00438 79 GDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNE 158 (188)
T ss_pred eeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHH
Confidence 57777777777777777778999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHcccCeEEEecCCCCCCCCceEEEEEeec
Q psy3133 82 FKQLFQRVHSTKPQASRKESAEIFVVCQHY 111 (547)
Q Consensus 82 lkqlF~kV~~~KP~ASR~~SsEiYvVC~gf 111 (547)
++..|..+.+.+|.+||..|+|.|+||.||
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 159 LRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred HHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 999999999999999999999999999997
No 17
>KOG3673|consensus
Probab=99.60 E-value=1.8e-15 Score=162.86 Aligned_cols=112 Identities=24% Similarity=0.291 Sum_probs=104.5
Q ss_pred CCCCChHHHHHHHHHh----CCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCc--CH
Q psy3133 2 EDITTDKCRIAITREL----KTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK--DY 75 (547)
Q Consensus 2 GDIt~~~~~~~I~~~l----~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~--d~ 75 (547)
|||+++.++..+..++ .+.+|++.|+||...|-|..+.++..+-+|-++.+..|+.++|+||+||||+|+-+ -.
T Consensus 329 Gdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFS 408 (845)
T KOG3673|consen 329 GDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFS 408 (845)
T ss_pred CCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcch
Confidence 8999999999888765 34689999999999999999999999999999999999999999999999999975 46
Q ss_pred HHHHHHHHcccCeEEEecCCCCCCCCceEEEEEeeccC
Q psy3133 76 TSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIA 113 (547)
Q Consensus 76 ~~Ll~~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~ 113 (547)
..|+++|..+|++|.++||.+||+.+||.||||+|.+.
T Consensus 409 VGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~ 446 (845)
T KOG3673|consen 409 VGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRK 446 (845)
T ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhh
Confidence 78999999999999999999999999999999999874
No 18
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.54 E-value=7.1e-15 Score=153.34 Aligned_cols=110 Identities=19% Similarity=0.184 Sum_probs=87.5
Q ss_pred ccccccccccCChhHhhhhhccccCCccchhHHHHHHHHHhcC-------CcCCCCeeeecCCCCCchHHHHHHhhcCCe
Q psy3133 164 NLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFE-------FLQKSKVCVDLCAAPGGWMQVAKQNMMASS 236 (547)
Q Consensus 164 ~~ss~~fi~~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~-------l~~~g~~VlDLGaaPGgWsqva~~~~g~~~ 236 (547)
+..++.|..+--++. ... +.||||+|||+|+...|. ++.+|++|||||||||||||+++++ |. .
T Consensus 165 ~~~~s~~~~Gi~Rl~---~p~----~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~-~ 235 (357)
T PRK11760 165 SNNSSPWPMGIPRLK---FPA----DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GM-F 235 (357)
T ss_pred CCCCCcCCCCccccc---CCC----CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CC-E
Confidence 456788888865542 222 789999999999966664 6799999999999999999999998 44 6
Q ss_pred EEeeccccccc------------------CCCcchhHHHhhccccccCHHHHHhhhhHHH-HHhHH
Q psy3133 237 IIHFDDESVLK------------------HPSTTVEIQECCKDIRVLGRKDVRNLLKWWK-VLHDE 283 (547)
Q Consensus 237 vv~vD~~~~~~------------------~p~~~~~i~~~~~Di~vl~~~~~r~LlkWr~-~l~d~ 283 (547)
|+|||.++|.. .|. ...+.|+++|+.+.|.+-.+.+.+|.. .++..
T Consensus 236 V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~-~~~vDwvVcDmve~P~rva~lm~~Wl~~g~cr~ 300 (357)
T PRK11760 236 VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP-RKNVDWLVCDMVEKPARVAELMAQWLVNGWCRE 300 (357)
T ss_pred EEEEechhcCHhhhCCCCEEEEeccCcccCCC-CCCCCEEEEecccCHHHHHHHHHHHHhcCcccE
Confidence 99999998851 111 446899999999999999999999986 44443
No 19
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4e-11 Score=119.89 Aligned_cols=56 Identities=30% Similarity=0.392 Sum_probs=53.9
Q ss_pred CCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 188 ~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.|+||+||||..+++.|+|..+|.+|||+|||+||||+|++++ |+..|+|||++.
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~ 112 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGY 112 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccC
Confidence 58999999999999999999999999999999999999999999 888899999985
No 20
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.99 E-value=7.5e-10 Score=104.89 Aligned_cols=80 Identities=35% Similarity=0.537 Sum_probs=63.9
Q ss_pred hHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccccccCCCcchhH
Q psy3133 177 TVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDESVLKHPSTTVEI 255 (547)
Q Consensus 177 ~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~~~~~p~~~~~i 255 (547)
|...++.. +||+|++|||.+++++|..+.+|.+|||+|||||+|+..++.+... ..|++||+.++. .. ..+
T Consensus 3 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--~~--~~i 74 (188)
T TIGR00438 3 YYQKAKKE----KYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--PI--ENV 74 (188)
T ss_pred HHHHHhhc----CCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--cC--CCc
Confidence 44455555 8999999999999999999999999999999999999999998743 468999999864 11 234
Q ss_pred HHhhccccc
Q psy3133 256 QECCKDIRV 264 (547)
Q Consensus 256 ~~~~~Di~v 264 (547)
.+.+.|+..
T Consensus 75 ~~~~~d~~~ 83 (188)
T TIGR00438 75 DFIRGDFTD 83 (188)
T ss_pred eEEEeeCCC
Confidence 555566543
No 21
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.96 E-value=7.4e-10 Score=110.27 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=52.0
Q ss_pred CccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 189 gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.|+||++|||.++.+.|++..+|.+|||+|||||+||++++++ |+..|+|||+.+
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~ 108 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGY 108 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCH
Confidence 4999999999999999999889999999999999999999997 778899999987
No 22
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=3.4e-09 Score=107.80 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=73.5
Q ss_pred CccchhHHHHHHHHHhc-------CCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc---------------
Q psy3133 189 GYRSRAAFKLIQLNRKF-------EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL--------------- 246 (547)
Q Consensus 189 gy~sRaa~KL~ei~~kf-------~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~--------------- 246 (547)
..||||+.||.|..-.| .-+.+|+..+||||+|||||.+++++-. .|.+||.++|.
T Consensus 183 dAPSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~ma~sL~dtg~v~h~r~D 260 (358)
T COG2933 183 DAPSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGPMAQSLMDTGQVTHLRED 260 (358)
T ss_pred CCCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcce--EEEEeccchhhhhhhcccceeeeecc
Confidence 45899999999996655 4468999999999999999999999843 37899999875
Q ss_pred ---cCCCcchhHHHhhccccccCHHHHHhhhhHHH-HHhHH
Q psy3133 247 ---KHPSTTVEIQECCKDIRVLGRKDVRNLLKWWK-VLHDE 283 (547)
Q Consensus 247 ---~~p~~~~~i~~~~~Di~vl~~~~~r~LlkWr~-~l~d~ 283 (547)
..| +...|.|+.+|+-.-+.+--..+.+|.. .+|..
T Consensus 261 Gfk~~P-~r~~idWmVCDmVEkP~rv~~li~~Wl~nGwCre 300 (358)
T COG2933 261 GFKFRP-TRSNIDWMVCDMVEKPARVAALIAKWLVNGWCRE 300 (358)
T ss_pred Cccccc-CCCCCceEEeehhcCcHHHHHHHHHHHHcchHHH
Confidence 223 4567899999998877777777888876 56654
No 23
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=98.24 E-value=7.1e-06 Score=92.74 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=90.1
Q ss_pred CCCCChHHHHHHHHHhC--CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCc--C-HH
Q psy3133 2 EDITTDKCRIAITRELK--TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK--D-YT 76 (547)
Q Consensus 2 GDIt~~~~~~~I~~~l~--~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~--d-~~ 76 (547)
.|+++++|-........ +..+|||++||- | .|......+-...-..+..+|.++|++|.|.|-+. . ..
T Consensus 394 SDLs~~~TW~YF~~l~~~~~~~idLiv~DmE--V-----~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~ 466 (675)
T PF14314_consen 394 SDLSDPETWKYFVSLKKQHNLSIDLIVMDME--V-----RDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDY 466 (675)
T ss_pred cccCCccHHHHHHHHHhhcCCcccEEEEece--e-----cChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchh
Confidence 47888877665555442 478999999993 3 34444444444445678889999999999999873 2 33
Q ss_pred HHHHHHHcccCeEEEecCCCCCCCCceEEEEEeeccCCCCCCcccCChhhh
Q psy3133 77 SLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFFDPKYA 127 (547)
Q Consensus 77 ~Ll~~lkqlF~kV~~~KP~ASR~~SsEiYvVC~gfk~p~~idp~llD~k~v 127 (547)
.++..|.++|..|.++.+..|=+.|+|+|+||++++... ++..+|-..+
T Consensus 467 ~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~--~~~~~~~~~l 515 (675)
T PF14314_consen 467 NILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP--DRPYVDWSSL 515 (675)
T ss_pred hHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC--CcCCCCHHHH
Confidence 689999999999999999999999999999999998753 7777766554
No 24
>PTZ00146 fibrillarin; Provisional
Probab=97.65 E-value=2.3e-05 Score=81.23 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=33.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
+.+|++|||||||||+||+.++..++.. .|++||+.+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~ 167 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH 167 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH
Confidence 6899999999999999999999999754 588999875
No 25
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=97.61 E-value=8.5e-05 Score=76.00 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=66.2
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEecCCCCC
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASR 98 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~KP~ASR 98 (547)
.+++|+|+|||=-.-+-.-+.+.-......-..+.+..+-|+-||++.+|+=..+- +.-++.|-+.|..++.+.- |--
T Consensus 119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~~Lyel~~~F~~wt~FcT-~VN 196 (299)
T PF06460_consen 119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-NAQLYELMGYFSWWTCFCT-AVN 196 (299)
T ss_dssp SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---HHHHHHHTTEEEEEEEEE-GGG
T ss_pred CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-cHHHHHHHhhcccEEEEec-ccC
Confidence 57999999999521111111111111222333356778889999999999976554 6667888899999999964 667
Q ss_pred CCCceEEEEEeeccCC----CCCCcccCChhhhhh
Q psy3133 99 KESAEIFVVCQHYIAP----AKLDTKFFDPKYAFK 129 (547)
Q Consensus 99 ~~SsEiYvVC~gfk~p----~~idp~llD~k~vF~ 129 (547)
..|||.|+||.+|.+. ..||...+...|+|=
T Consensus 197 tSSSEaFLigiNYLg~~~~~~~IdG~~mHAnYifW 231 (299)
T PF06460_consen 197 TSSSEAFLIGINYLGKFSEGEIIDGNVMHANYIFW 231 (299)
T ss_dssp TTSS-EEEEEEEE-SS---SS---HHHHHHHHHHH
T ss_pred ccccceeEEeeeccCccccccccchHHHHHHHHHH
Confidence 7899999999999986 356677777777774
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.45 E-value=0.00014 Score=62.16 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=39.5
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc-------c-CCCcchhHHHhhccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL-------K-HPSTTVEIQECCKDI 262 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~-------~-~p~~~~~i~~~~~Di 262 (547)
||.+|||||||+|.++..++++.+...|++||+.|-. . .......|.+.++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 6899999999999999999997677779999998632 1 112234556666666
No 27
>PRK04266 fibrillarin; Provisional
Probab=97.43 E-value=0.00012 Score=72.83 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=33.6
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+++|.+|||+|||||+|+..++..++...|+++|+.+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~ 106 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP 106 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH
Confidence 5789999999999999999999998755689999986
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.42 E-value=0.00027 Score=76.33 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 199 IQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 199 ~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..+.+... +.+|.+|||+|||+|+++..++...+. .|+|||+.+
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~ 299 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSV 299 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCH
Confidence 34445554 478999999999999999999887643 589999974
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.27 E-value=0.00031 Score=60.42 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=33.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.++.+|||||||+|.|+..++++.+...|+++|+.+-
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~ 54 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE 54 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH
Confidence 45678999999999999999999887777999998753
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.98 E-value=0.00071 Score=65.62 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=32.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|.|+..+++..++ ..|++||+.+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 467899999999999999999998865 4689999974
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.98 E-value=0.00033 Score=69.60 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 191 RSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 191 ~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.|..+.|++. +. +.++.+|||||||+|.++..++.+.+...|+++|+.+
T Consensus 14 ~~~~~~~ll~~---l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~ 63 (255)
T PRK14103 14 RGRPFYDLLAR---VG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP 63 (255)
T ss_pred hhCHHHHHHHh---CC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH
Confidence 44455554433 22 3678999999999999999999987555689999976
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.91 E-value=0.0013 Score=68.67 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 193 RAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 193 Raa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
|+-+|...+...++.+ .|.+|||||||+|.|+..++.. |+..|+|||..+.
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~ 156 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQL 156 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHH
Confidence 5666766666666654 5789999999999999999887 6666999998763
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.80 E-value=0.0012 Score=65.40 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=32.9
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.++.+|||||||+|.|+..+++..+...|++||+.+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~ 65 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP 65 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH
Confidence 3678999999999999999999987767799999975
No 34
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.0016 Score=67.58 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
||..+.++++| .||++|||+|||-|+-+.+++++.+. .|+||++.+
T Consensus 60 k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~ 105 (283)
T COG2230 60 KLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSE 105 (283)
T ss_pred HHHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCH
Confidence 66677777664 89999999999999999999999854 488998863
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.75 E-value=0.0019 Score=62.08 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=29.7
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
|.+|||+|||+|.++..++...+...|++||..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~ 76 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNH 76 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH
Confidence 8999999999999999998765555799999986
No 36
>PRK11524 putative methyltransferase; Provisional
Probab=96.73 E-value=0.1 Score=53.43 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhCCCcccEEecCCCCCC-------CCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 7 DKCRIAITRELKTWKVDVVLHDGSPNV-------GMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 7 ~~~~~~I~~~l~~~kvDVVLSDgAPnv-------sG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
..|.+.+ ..+....+|+|++|=--++ .+.|..+.+ .......+..+..+|++||+|++
T Consensus 14 gD~~~~l-~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 14 GDALTEL-KKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLF--IDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred ccHHHHH-HhcccCcccEEEECCCcccccccccccccccHHHH--HHHHHHHHHHHHHHhCCCcEEEE
Confidence 4566544 4566778999999954333 223333323 34456778889999999999997
No 37
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.72 E-value=0.0014 Score=66.32 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+++|.+|||+||||||+|-.+++.++. +.|+++|+.+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 106 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK 106 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH
Confidence 468999999999999999999998864 4689999985
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.69 E-value=0.002 Score=62.98 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred HHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 200 QLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 200 ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+......+.++.+|||+|||+|.++..+++..+...++|||+.+
T Consensus 33 ~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~ 77 (204)
T TIGR03587 33 MFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINE 77 (204)
T ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH
Confidence 344444456688899999999999999999887666799999986
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.63 E-value=0.002 Score=57.77 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=30.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..++.+|||||||+|.|+..+... |. .++++|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~ 54 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISP 54 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCH
Confidence 688999999999999999999666 44 689999975
No 40
>PRK14967 putative methyltransferase; Provisional
Probab=96.63 E-value=0.0024 Score=62.43 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 193 RAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 193 Raa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+..+.|.++....+ +.+|.+|||+|||+|.|+..++.. +...+++||+.+-
T Consensus 20 ~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~ 70 (223)
T PRK14967 20 EDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRR 70 (223)
T ss_pred CcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHH
Confidence 34556777766655 467899999999999999998875 5557899999863
No 41
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.60 E-value=0.0019 Score=69.62 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=33.2
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||+||||||+|-.+++.++...|+++|+.+
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~ 272 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHE 272 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH
Confidence 4689999999999999999999998756789999975
No 42
>PRK08317 hypothetical protein; Provisional
Probab=96.60 E-value=0.0022 Score=60.99 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=32.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.++.+|||+|||+|+|+..++..+++ ..++++|+.+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~ 54 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE 54 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH
Confidence 468899999999999999999998853 4689999875
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.55 E-value=0.0037 Score=59.70 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 193 RAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 193 Raa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+..|.++...... ..+.+|||||||+|.|+..+++......++++|+.+.
T Consensus 18 ~~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 69 (240)
T TIGR02072 18 EMAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG 69 (240)
T ss_pred HHHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH
Confidence 345556666555442 3348899999999999999999876556899998753
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.50 E-value=0.0024 Score=69.03 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=32.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhc-CCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~~ 245 (547)
+.+|.+|||+|||||+||..++.+++ ...|++||+.+-
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~ 286 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH 286 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 36889999999999999999999884 456899999753
No 45
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.46 E-value=0.00081 Score=67.25 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=34.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccccccC-------CCcchhHHHhhccccccC
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDESVLKH-------PSTTVEIQECCKDIRVLG 266 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~~~~~-------p~~~~~i~~~~~Di~vl~ 266 (547)
..+|.+|||||||||-++..+++++++. .|+++|+.+-.+. ......|.++++|...++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP 111 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence 4689999999999999999999998764 6899999852100 011225677777776544
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.42 E-value=0.0031 Score=64.70 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
|+.-+.++.+ ++||++|||||||-||.+..++++.|. .|++|.+.
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS 94 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLS 94 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECC
Confidence 6666777775 689999999999999999999999865 47888775
No 47
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.38 E-value=0.056 Score=57.20 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=30.1
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+|||||||+|.++..++.+.+...|+++|+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~ 231 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA 231 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH
Confidence 45899999999999999999866567999999864
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.37 E-value=0.0033 Score=60.98 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=31.2
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
++.+|||||||+|.++..+++..+...+++||+.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~ 74 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE 74 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEech
Confidence 67899999999999999999887666799999986
No 49
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.36 E-value=0.0035 Score=57.26 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=39.2
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhc-CCeEEeecccccc-----c--CCCcchhHHHhhccccccC
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDESVL-----K--HPSTTVEIQECCKDIRVLG 266 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~~~-----~--~p~~~~~i~~~~~Di~vl~ 266 (547)
..+.+|||||||+|.++..++++++ ...+++||+.+-. . .......+.+.++|+..++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc
Confidence 4678999999999999999996654 4568999998622 0 0011124566667776654
No 50
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.35 E-value=0.0034 Score=67.73 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=32.8
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||||||||++|..++++++...|+++|+.+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~ 278 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA 278 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH
Confidence 4689999999999999999999987656789999976
No 51
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.30 E-value=0.0041 Score=59.47 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=31.8
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|.++..++...+...|++||..+
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~ 74 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE 74 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH
Confidence 4688999999999999999998765556799999976
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.29 E-value=0.0053 Score=59.62 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=33.2
Q ss_pred CCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 206 EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 206 ~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|.+|||+|||+|..+..++...+...|++||..+
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~ 79 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLG 79 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcH
Confidence 445569999999999999999998876667799999975
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.21 E-value=0.0062 Score=65.17 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
|+..+.++.+ +.+|++|||||||+|+++..+++..|. .|++||+.+
T Consensus 155 k~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~ 200 (383)
T PRK11705 155 KLDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISA 200 (383)
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCH
Confidence 4555556655 478999999999999999999987654 589999875
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=96.21 E-value=0.0069 Score=63.50 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=37.4
Q ss_pred HHHHHHhcCC----cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 198 LIQLNRKFEF----LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 198 L~ei~~kf~l----~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.++.+..++ ..++.+|||||||+|+++..++++.+ ..|++||+.+.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~ 152 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPV 152 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHH
Confidence 4556666666 27889999999999999999999864 35899998753
No 55
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.13 E-value=0.0085 Score=57.45 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhc-CCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~ 244 (547)
.++.+|||+|||+|.|+..++...+ ...++++|+.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 3789999999999999999999875 35689999864
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.11 E-value=0.0059 Score=57.89 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|||||||+|.++..++.+.+...|++||+.+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~ 65 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP 65 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH
Confidence 478999999999999999999886556799999975
No 57
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.10 E-value=0.0049 Score=62.46 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc-cc------cCCCcchhHHHhhccccccC
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES-VL------KHPSTTVEIQECCKDIRVLG 266 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~-~~------~~p~~~~~i~~~~~Di~vl~ 266 (547)
+|.+|||||||||-|+--+++.+|...|+++|..+ |. ....+...|.++.+|...|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 89999999999999999999999977899999985 21 11111112666777766543
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.08 E-value=0.0062 Score=60.96 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=32.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
+.+|.+|||||||+|.|+..++..++.. .|++||+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~ 112 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP 112 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH
Confidence 5789999999999999999888888765 589999965
No 59
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.08 E-value=0.0054 Score=60.36 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=31.5
Q ss_pred CcCCCCeeeecCCCCCchHHHHHHhhc--CCeEEeecccc
Q psy3133 207 FLQKSKVCVDLCAAPGGWMQVAKQNMM--ASSIIHFDDES 244 (547)
Q Consensus 207 l~~~g~~VlDLGaaPGgWsqva~~~~g--~~~vv~vD~~~ 244 (547)
++.++.+|||||||+|.++..+++++. ...+++||+.+
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~ 89 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ 89 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH
Confidence 346889999999999999999998753 34689999974
No 60
>PRK00811 spermidine synthase; Provisional
Probab=95.99 E-value=0.028 Score=57.67 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=61.1
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEe----ccCcCHHHHHHHHHcccCeEEEec-
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKV----FRSKDYTSLLWIFKQLFQRVHSTK- 93 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KV----Frg~d~~~Ll~~lkqlF~kV~~~K- 93 (547)
..++|+|++|..+..+... +. .....+..+...|++||.||+=+ +....+..+...|++.|..|..+.
T Consensus 148 ~~~yDvIi~D~~dp~~~~~---~l----~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAE---GL----FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQA 220 (283)
T ss_pred CCcccEEEECCCCCCCchh---hh----hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4589999999876543211 11 12344567789999999999732 222245678899999999999988
Q ss_pred CCCCCCCCceEEEEEee
Q psy3133 94 PQASRKESAEIFVVCQH 110 (547)
Q Consensus 94 P~ASR~~SsEiYvVC~g 110 (547)
+.+|.+...=.|++|..
T Consensus 221 ~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 221 AIPTYPSGLWSFTFASK 237 (283)
T ss_pred ECCcccCchheeEEeec
Confidence 67787777778899875
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.98 E-value=0.0074 Score=58.04 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=32.2
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|.++-.++..+++ ..|++||+.+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~ 75 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE 75 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 568999999999999999999888754 4689999975
No 62
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.95 E-value=0.012 Score=61.83 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 193 RAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 193 Raa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
||-+|...+..+.+. .+|.+|||+|||+|..+..++.. |+..|+|||..+
T Consensus 105 ~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~ 154 (314)
T TIGR00452 105 RSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTV 154 (314)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCH
Confidence 455666666666554 45789999999999998887765 666799999876
No 63
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.86 E-value=0.0081 Score=65.19 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=32.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+||||||+|..+++.++. ..|+++|+.+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~ 285 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP 285 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH
Confidence 468999999999999999999998754 4689999985
No 64
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.86 E-value=0.0086 Score=60.48 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=32.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||||||+|.++..+++++++ ..|+|||+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 468999999999999999999988765 3689999975
No 65
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.84 E-value=0.011 Score=57.11 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=31.6
Q ss_pred HHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 202 NRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 202 ~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
...+.++. +.+|||+|||+|.++..++++ | ..|++||+.+.
T Consensus 23 ~~~~~~~~-~~~vLDiGcG~G~~a~~la~~-g-~~V~~iD~s~~ 63 (195)
T TIGR00477 23 REAVKTVA-PCKTLDLGCGQGRNSLYLSLA-G-YDVRAWDHNPA 63 (195)
T ss_pred HHHhccCC-CCcEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHH
Confidence 33444444 469999999999999999986 3 35999999763
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.83 E-value=0.0088 Score=58.08 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=32.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|..+.++++.++. ..|+++|+.+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~ 107 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK 107 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH
Confidence 478899999999999999999998863 4588999875
No 67
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.72 E-value=0.016 Score=54.93 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=31.1
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
.++.+|||+|||+|.|+..++...+. ..++++|+.+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~ 74 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS 74 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH
Confidence 37899999999999999999988764 4689999864
No 68
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.70 E-value=0.014 Score=58.15 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=33.6
Q ss_pred HHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 198 LIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 198 L~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
|.++...+. .++.+|||+|||+|.++..++.+ | ..|++||+.+
T Consensus 34 ~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~-g-~~v~~vD~s~ 76 (255)
T PRK11036 34 LDRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL-G-HQVILCDLSA 76 (255)
T ss_pred HHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc-C-CEEEEEECCH
Confidence 444555544 56789999999999999999987 3 4589999975
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.67 E-value=0.013 Score=61.70 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 193 RAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 193 Raa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
||-+|-..+...+. --.|.+|||+||+-|-|+.-++.+ |+..|+|||..+.
T Consensus 99 rSd~KW~rl~p~l~-~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l 149 (315)
T PF08003_consen 99 RSDWKWDRLLPHLP-DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL 149 (315)
T ss_pred cccchHHHHHhhhC-CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH
Confidence 56667666666663 347999999999999999999988 8888999997654
No 70
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.63 E-value=0.011 Score=63.93 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=32.2
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+||||||.|-.+++.++. ..|+++|+.+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 287 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA 287 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH
Confidence 468999999999999999999998764 4689999975
No 71
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.60 E-value=0.038 Score=59.87 Aligned_cols=75 Identities=19% Similarity=0.116 Sum_probs=53.6
Q ss_pred CcccEEecCCCCCCCCCh-----------hhhHHHHHHHHHHHHHHHHhhccCCCEEE---EEeccCcCHHHHHHHHHc-
Q psy3133 20 WKVDVVLHDGSPNVGMNW-----------VYDAYHQCCLTLGALKLASGILKEGGWFV---TKVFRSKDYTSLLWIFKQ- 84 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~-----------~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV---~KVFrg~d~~~Ll~~lkq- 84 (547)
..||+|++|+...-.|.+ ..+......+....|..|..+|+|||.|| |.+|.......+.+.+++
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 469999999632112221 12334445677788999999999999999 899998887777777777
Q ss_pred -ccCeEEEecC
Q psy3133 85 -LFQRVHSTKP 94 (547)
Q Consensus 85 -lF~kV~~~KP 94 (547)
.|..+.+..|
T Consensus 399 ~~~~~~~~~~~ 409 (444)
T PRK14902 399 PEFELVPLQHE 409 (444)
T ss_pred CCcEEeccccc
Confidence 4777666554
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.55 E-value=0.014 Score=56.93 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=32.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||||||+|.++.+++...+. ..|++||..+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~ 112 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP 112 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH
Confidence 578999999999999999999998764 3588999875
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.53 E-value=0.013 Score=57.31 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=32.5
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|..+-++++.++. ..|++||+.+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~ 111 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP 111 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH
Confidence 578999999999999999999998875 4689999875
No 74
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.46 E-value=0.015 Score=55.55 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=29.7
Q ss_pred CcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 207 FLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 207 l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+.++.+|||||||+|.++..+++..+. .+++||+.+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~giD~s~ 46 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQV-RGYGIEIDQ 46 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccCC-cEEEEeCCH
Confidence 4568899999999999999988876433 468898764
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.42 E-value=0.012 Score=60.17 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=31.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
..+|.+|||+|||+|..+..++. .|...|++||+.+.
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~ 193 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPL 193 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHH
Confidence 35789999999999999987775 47778999999865
No 76
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.33 E-value=0.016 Score=62.92 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=32.2
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+.+|.+|||+||||||-|-.+++.++. ..|+++|+.+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~ 272 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR 272 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH
Confidence 468999999999999999999998853 4689999975
No 77
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.32 E-value=0.016 Score=58.57 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 201 LNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 201 i~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+...++ +.++.+|||||||+|+++..++...+ ..|++||+.+
T Consensus 44 ~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~ 85 (263)
T PTZ00098 44 ILSDIE-LNENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICE 85 (263)
T ss_pred HHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCH
Confidence 444432 47889999999999999999887653 3589999875
No 78
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.32 E-value=0.016 Score=54.31 Aligned_cols=35 Identities=9% Similarity=0.227 Sum_probs=30.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||||||+|..+..++.+ ...+++||+.+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~ 45 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDP 45 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCH
Confidence 356789999999999999999998 34689999885
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.30 E-value=0.024 Score=58.38 Aligned_cols=37 Identities=8% Similarity=0.041 Sum_probs=31.9
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhc-CCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~ 244 (547)
+.+|.+|||||||+|.+|..+++.+. +..+++||+.+
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 45788999999999999999998875 45689999986
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.24 E-value=0.052 Score=54.81 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCC---eEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMAS---SIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~---~vv~vD~~~ 244 (547)
.++.+|||+|||+|.|+..++..++.. .++|+|+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~ 122 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK 122 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH
Confidence 456889999999999999998876432 479999975
No 81
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.19 E-value=0.018 Score=57.47 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.6
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhh--cCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNM--MASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~--g~~~vv~vD~~~ 244 (547)
+.+|.+|||||||+|.++..+++.+ +...+++||+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~ 92 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP 92 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH
Confidence 5688999999999999998888754 334689999975
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.02 Score=59.95 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
++|++|||+|||+|=-+-.++. +|+..|+|+|+-|+.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~A 197 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQA 197 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHH
Confidence 3999999999999987766665 488899999998875
No 83
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.18 E-value=0.018 Score=60.56 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=32.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
+++|.+|||||||+|.|+.++++.++. ..|++||..+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~ 115 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR 115 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH
Confidence 468899999999999999999998765 3588999875
No 84
>PRK06202 hypothetical protein; Provisional
Probab=95.15 E-value=0.029 Score=55.03 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=29.2
Q ss_pred CCCCeeeecCCCCCchHHHHHHhh---cC-CeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNM---MA-SSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~---g~-~~vv~vD~~~ 244 (547)
.++.+|||||||+|.++..++... |. ..+++||+.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 567899999999999999888654 32 2589999975
No 85
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.14 E-value=0.018 Score=56.83 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|||||||||.+++.++.+ + ..|+++|+.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~~D~s~ 74 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER-G-SQVTALDLSP 74 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc-C-CeEEEEECCH
Confidence 46789999999999999998875 3 4689999975
No 86
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.08 E-value=0.019 Score=58.30 Aligned_cols=57 Identities=7% Similarity=-0.008 Sum_probs=39.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccccCC----CcchhHHHhhccccccC
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKHP----STTVEIQECCKDIRVLG 266 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~~~p----~~~~~i~~~~~Di~vl~ 266 (547)
+.+|.+|||+|||+|..|..++++.+ .|+|||+.+-.... .....+...++|+..+.
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVD 100 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCC
Confidence 46788999999999999999999843 68999988522110 00123555666665544
No 87
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.04 E-value=0.028 Score=54.28 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
++.+|||+|||+|.++.+++++ | ..|++||+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g-~~V~gvD~S~ 62 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-G-FDVTAWDKNP 62 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C-CEEEEEeCCH
Confidence 5689999999999999999987 3 3589999975
No 88
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.03 E-value=0.031 Score=54.24 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=29.5
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.++.+|||+|||+|..+..++.. + ..|+|||+.+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~v~gvD~s~ 87 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-G-AIVKAVDISE 87 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-C-CEEEEEECCH
Confidence 457899999999999999999875 3 3689999875
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=94.97 E-value=0.032 Score=58.13 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=43.1
Q ss_pred eccccccccccCChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecc
Q psy3133 163 KNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDD 242 (547)
Q Consensus 163 ~~~ss~~fi~~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~ 242 (547)
.--+...|=-+.+|-.++.- ++.+++ ..+|.+|||+|||+|==+-.|+. +|++.|+++|+
T Consensus 133 ~idPg~AFGTG~H~TT~lcl-----------------~~l~~~--~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~Di 192 (295)
T PF06325_consen 133 EIDPGMAFGTGHHPTTRLCL-----------------ELLEKY--VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDI 192 (295)
T ss_dssp EESTTSSS-SSHCHHHHHHH-----------------HHHHHH--SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEES
T ss_pred EECCCCcccCCCCHHHHHHH-----------------HHHHHh--ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecC
Confidence 33445556556777543322 233333 67899999999999977766666 49989999999
Q ss_pred cccc
Q psy3133 243 ESVL 246 (547)
Q Consensus 243 ~~~~ 246 (547)
.|..
T Consensus 193 Dp~A 196 (295)
T PF06325_consen 193 DPLA 196 (295)
T ss_dssp SCHH
T ss_pred CHHH
Confidence 8764
No 90
>PRK05785 hypothetical protein; Provisional
Probab=94.97 E-value=0.025 Score=56.04 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|||||||||..+..++++. ...|+|||+.+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~ 84 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAE 84 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCH
Confidence 357899999999999999888875 34689999875
No 91
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.92 E-value=0.031 Score=59.35 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=35.9
Q ss_pred HHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 201 LNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 201 i~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.....+..++.+|||||||+|.++..+++.++...++++|+.+
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~ 147 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP 147 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH
Confidence 34455566788999999999999999998887666789999864
No 92
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=94.88 E-value=0.025 Score=54.61 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=28.3
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+|||+|||+|+|+..+++..+...|+++|+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~ 33 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP 33 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH
Confidence 369999999999999999987656688999864
No 93
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.85 E-value=0.022 Score=53.67 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=29.4
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.++.+|||||||+|.++..++.+. . .|+++|+.+-
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~-~-~v~~vD~s~~ 52 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG-K-CILTTDINPF 52 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC-C-EEEEEECCHH
Confidence 456789999999999999999874 3 6899999863
No 94
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.85 E-value=0.039 Score=57.65 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=37.3
Q ss_pred HHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhc-CCeEEeeccccc
Q psy3133 199 IQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDESV 245 (547)
Q Consensus 199 ~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~~ 245 (547)
.|+.+.+. +.||.++||++||.||.|..+++.++ ...|+|+|..|.
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~ 55 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD 55 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH
Confidence 34555554 36889999999999999999999986 456999999874
No 95
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.82 E-value=0.024 Score=48.32 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=32.7
Q ss_pred eeecCCCCCchHHHHHHhh--cC-CeEEeecccccccC-----C-CcchhHHHhhcccccc
Q psy3133 214 CVDLCAAPGGWMQVAKQNM--MA-SSIIHFDDESVLKH-----P-STTVEIQECCKDIRVL 265 (547)
Q Consensus 214 VlDLGaaPGgWsqva~~~~--g~-~~vv~vD~~~~~~~-----p-~~~~~i~~~~~Di~vl 265 (547)
|||||||+|.++..+.... ++ ..+++||+.+-... . .....+++++.|+..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC
Confidence 7999999999999999986 32 56899999853200 0 0111566777777553
No 96
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.73 E-value=0.034 Score=56.76 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=29.2
Q ss_pred CcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 207 FLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 207 l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.++ +|||||||+|.++..++.+ | ..|+|||..+.
T Consensus 118 ~~~~~-~vLDlGcG~G~~~~~la~~-g-~~V~avD~s~~ 153 (287)
T PRK12335 118 TVKPG-KALDLGCGQGRNSLYLALL-G-FDVTAVDINQQ 153 (287)
T ss_pred ccCCC-CEEEeCCCCCHHHHHHHHC-C-CEEEEEECCHH
Confidence 34555 9999999999999999986 3 35899999753
No 97
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=94.71 E-value=0.031 Score=48.09 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
|.+|||+|||+|..+-.++... ...++++|+.|..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~ 35 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEA 35 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHH
Confidence 6799999999999999999886 6678999998753
No 98
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.68 E-value=0.038 Score=53.15 Aligned_cols=35 Identities=6% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
...+|||||||+|.++..++.+.+...+++||+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~ 50 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT 50 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH
Confidence 56799999999999999999887666799999975
No 99
>PRK14968 putative methyltransferase; Provisional
Probab=94.66 E-value=0.049 Score=50.55 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+|.+|||+|||+|.|+..++.+ ...++++|..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~ 55 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINP 55 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCH
Confidence 67899999999999999999988 35689999875
No 100
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.59 E-value=0.058 Score=56.80 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=28.7
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+|.+|||||||+|.++..++.. | ..|++||..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g-~~V~GID~s~ 163 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-G-ATVTGVDAVD 163 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-C-CEEEEEeCCH
Confidence 46889999999999999988864 3 3589999885
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=94.50 E-value=0.044 Score=54.29 Aligned_cols=37 Identities=5% Similarity=0.159 Sum_probs=30.8
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCe-EEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~-vv~vD~~~ 244 (547)
++||++|||+|||+|-.|-+++..+|..+ |++||..+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~ 107 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP 107 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH
Confidence 88999999999999999999999998765 88998775
No 102
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.49 E-value=0.04 Score=53.15 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=28.3
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|||||||+|.++..++.. +. .|+++|+.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~-~v~~~D~s~ 95 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GA-KVVASDISP 95 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CC-EEEEEECCH
Confidence 56789999999999999998876 33 488999864
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.48 E-value=0.056 Score=54.09 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=30.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+|.+|||+|||+|..+..++. .|...|+++|+.+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~ 153 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQ 153 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHH
Confidence 56899999999999988776554 56667999999864
No 104
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=94.47 E-value=0.17 Score=54.72 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=47.3
Q ss_pred CCcccEEecCCCCCCCCChh-----------hhHHHHHHHHHHHHHHHHhhccCCCEEE---EEeccCcCHHHHHHHHHc
Q psy3133 19 TWKVDVVLHDGSPNVGMNWV-----------YDAYHQCCLTLGALKLASGILKEGGWFV---TKVFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~-----------~D~~~q~~L~~~AL~LA~~~Lr~GGtFV---~KVFrg~d~~~Ll~~lkq 84 (547)
...||+|++|.....+|.+. .|...-..+....|.-|..+|+|||.|| |-+|.......+.+.+.+
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 45799999999655444321 1222223555677888999999999999 788888887777777765
Q ss_pred c
Q psy3133 85 L 85 (547)
Q Consensus 85 l 85 (547)
+
T Consensus 391 ~ 391 (427)
T PRK10901 391 H 391 (427)
T ss_pred C
Confidence 3
No 105
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.44 E-value=0.035 Score=56.30 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=41.0
Q ss_pred CccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 189 gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+-|+|-+.-|+. +-. +.+-.+|+|||||||.=|..+++|-+...+.|||-.+
T Consensus 13 ~eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~ 64 (257)
T COG4106 13 DERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP 64 (257)
T ss_pred HhccCcHHHHHh---hCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH
Confidence 446777776653 222 3455789999999999999999999988889999875
No 106
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.40 E-value=0.037 Score=55.35 Aligned_cols=35 Identities=6% Similarity=0.158 Sum_probs=29.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.++.+|||+|||+|++|..++++.. .|++||+.+
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~ 61 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDP 61 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCH
Confidence 35789999999999999999999853 388988864
No 107
>PRK06922 hypothetical protein; Provisional
Probab=94.29 E-value=0.039 Score=63.23 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+|.+|||+|||+|.++..++...+...++|+|+.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~ 452 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE 452 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH
Confidence 68999999999999999888887667799999986
No 108
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.28 E-value=0.046 Score=52.87 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=29.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.++.+|||+|||+|.++.+++...+ .|++||..+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~ 110 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIK 110 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCH
Confidence 47889999999999999998887743 588998764
No 109
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.26 E-value=0.039 Score=56.51 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=32.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.++.+|||+|||+|.|+..++++.+...++++|+.++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~ 184 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA 184 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHH
Confidence 57889999999999999999999976667889997543
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.25 E-value=0.057 Score=53.70 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=32.6
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
..++.+|||+|||+|.++..++...+...++++|+.+-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~ 143 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE 143 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 35678999999999999999999876667899998753
No 111
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.19 E-value=0.056 Score=55.67 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=32.5
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhc-CCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~ 244 (547)
..+|..|||+||||||=|-.+++.++ .+.++++|+.+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~ 120 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP 120 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCH
Confidence 57899999999999999999999987 44578999875
No 112
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.12 E-value=0.083 Score=52.38 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccccCC------CcchhHHHhhccccc
Q psy3133 194 AAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKHP------STTVEIQECCKDIRV 264 (547)
Q Consensus 194 aa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~~~p------~~~~~i~~~~~Di~v 264 (547)
|+|=|+.+.- +-.-.|.+|+|||||+|-.+- ++-.+|+..|+|||+-|-.... .....|.++++|++-
T Consensus 31 Aa~il~~a~~--~g~l~g~~V~DlG~GTG~La~-ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~ 104 (198)
T COG2263 31 AAYILWVAYL--RGDLEGKTVLDLGAGTGILAI-GAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSD 104 (198)
T ss_pred HHHHHHHHHH--cCCcCCCEEEEcCCCcCHHHH-HHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh
Confidence 4455565552 223468899999999998764 4455688999999987632111 112246666666654
No 113
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=93.93 E-value=0.08 Score=49.90 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=31.8
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||||||+|--+-.++.+.+...|+++|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~ 66 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPD 66 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHH
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 788999999999999999999866657999999864
No 114
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=93.92 E-value=0.083 Score=55.50 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=29.2
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+|.+|||||||+|.++..++++ | ..|+++|+.+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~-g-~~V~gvD~S~ 176 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALE-G-AIVSASDISA 176 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHC-C-CEEEEEECCH
Confidence 36889999999999999999986 3 3589999986
No 115
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=93.91 E-value=0.053 Score=59.92 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=31.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
..+|.+|||+||||||=|-.+++.++.. .++++|+.+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~ 148 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA 148 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH
Confidence 3689999999999999999999998654 578999863
No 116
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.89 E-value=0.053 Score=43.96 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.3
Q ss_pred eecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 215 VDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 215 lDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
||||||+|..+..++++ +...++++|+.+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~ 29 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISE 29 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-H
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCH
Confidence 89999999999999999 677799999875
No 117
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=93.83 E-value=0.041 Score=53.32 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=31.5
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
-.|.+||||+||+|+++-.|+.+ |+..|++||..+-
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~ 83 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRK 83 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHH
Confidence 36899999999999999999998 6667999998753
No 118
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.79 E-value=0.2 Score=50.89 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=56.5
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEe----ccCcCHHHHHHHHHcccCeEEEec-C
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKV----FRSKDYTSLLWIFKQLFQRVHSTK-P 94 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KV----Frg~d~~~Ll~~lkqlF~kV~~~K-P 94 (547)
.++|||++|.....+.... -.....+..+...|+|||.||+-. +....+..+...++..|..|..+. +
T Consensus 144 ~~yDvIi~D~~~~~~~~~~-------l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~ 216 (270)
T TIGR00417 144 NTFDVIIVDSTDPVGPAET-------LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTAN 216 (270)
T ss_pred CCccEEEEeCCCCCCcccc-------hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 5799999997533321111 112455667789999999999852 122235667778999999999876 4
Q ss_pred CCCCCCCceEEEEEee
Q psy3133 95 QASRKESAEIFVVCQH 110 (547)
Q Consensus 95 ~ASR~~SsEiYvVC~g 110 (547)
.+|-....=.|+||..
T Consensus 217 vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 217 IPTYPSGLWTFTIGSK 232 (270)
T ss_pred cCccccchhEEEEEEC
Confidence 5555555558999975
No 119
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.73 E-value=0.027 Score=47.47 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=25.0
Q ss_pred eecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 215 VDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 215 lDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
||+|||+|..+..+++..+...++++|+.+-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~ 31 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS 31 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH
Confidence 7999999999999999976667899999864
No 120
>PTZ00146 fibrillarin; Provisional
Probab=93.70 E-value=0.35 Score=50.71 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=38.0
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEecc-----CcCHHHH----HHHHHcc-cCeEE
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFR-----SKDYTSL----LWIFKQL-FQRVH 90 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFr-----g~d~~~L----l~~lkql-F~kV~ 90 (547)
.||+|+||++. .|+...+.++ |..+|+|||.||+++-. ++.-... +..|++. |+.+.
T Consensus 202 ~vDvV~~Dva~-------pdq~~il~~n------a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 202 MVDVIFADVAQ-------PDQARIVALN------AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred CCCEEEEeCCC-------cchHHHHHHH------HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEE
Confidence 69999999962 3333222222 67899999999996432 1222222 3556665 88777
Q ss_pred EecC
Q psy3133 91 STKP 94 (547)
Q Consensus 91 ~~KP 94 (547)
.+..
T Consensus 269 ~v~L 272 (293)
T PTZ00146 269 QLTL 272 (293)
T ss_pred EEec
Confidence 7764
No 121
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.68 E-value=0.055 Score=52.75 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..+.+|||+|||+|.++..++...+...++++|+.+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~ 121 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP 121 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence 345699999999999999999887666789999875
No 122
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.61 E-value=0.057 Score=58.15 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
+.+|||||||+|-++..++.+.+...|++||+.++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~A 264 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMA 264 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHH
Confidence 469999999999999999998766679999999764
No 123
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.55 E-value=0.061 Score=42.68 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=25.8
Q ss_pred eeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 213 VCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 213 ~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+|||+|||+|+.+..++. .+...++++|+.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~ 31 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISP 31 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCH
Confidence 489999999999999988 3455688999865
No 124
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.52 E-value=0.065 Score=53.00 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=29.7
Q ss_pred CCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 206 EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 206 ~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.||.+|||||||.|.-...+.+..+. ...||++.+
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~ 46 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDP 46 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCH
Confidence 36799999999999999998888886433 256777654
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.40 E-value=0.76 Score=51.22 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=29.8
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+-.+||||||-|+|+--++...+...+||||+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~ 381 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYL 381 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeH
Confidence 46789999999999998888887766789999874
No 126
>PRK13699 putative methylase; Provisional
Probab=93.40 E-value=4.9 Score=40.29 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhCCCcccEEecC-----CCCCCCCC-hhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcC-HHHHH
Q psy3133 7 DKCRIAITRELKTWKVDVVLHD-----GSPNVGMN-WVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKD-YTSLL 79 (547)
Q Consensus 7 ~~~~~~I~~~l~~~kvDVVLSD-----gAPnvsG~-~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d-~~~Ll 79 (547)
-.|++-+ ..+....+|+|+.| |-.+.+|. ...+. ..+.....+.-+..+|+|||+|++ |-+.. ...++
T Consensus 7 gD~le~l-~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~--~~ew~~~~l~E~~RVLKpgg~l~i--f~~~~~~~~~~ 81 (227)
T PRK13699 7 GNCIDVM-ARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDK--TDEWLQPACNEMYRVLKKDALMVS--FYGWNRVDRFM 81 (227)
T ss_pred chHHHHH-HhCCccccceEEeCCCcccccccCCCccccccc--HHHHHHHHHHHHHHHcCCCCEEEE--EeccccHHHHH
Confidence 3566644 46778899999999 32222221 11222 335566777888899999999985 54432 33444
Q ss_pred HHHHc-cc---CeEEEecCCCC
Q psy3133 80 WIFKQ-LF---QRVHSTKPQAS 97 (547)
Q Consensus 80 ~~lkq-lF---~kV~~~KP~AS 97 (547)
..+.. =| ..+...|+.++
T Consensus 82 ~al~~~GF~l~~~IiW~K~~~~ 103 (227)
T PRK13699 82 AAWKNAGFSVVGHLVFTKNYTS 103 (227)
T ss_pred HHHHHCCCEEeeEEEEECCCCC
Confidence 44443 23 44566677654
No 127
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=93.40 E-value=0.073 Score=53.65 Aligned_cols=35 Identities=3% Similarity=0.098 Sum_probs=30.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|.-|..++++ + ..|++||+.+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~-~-~~v~~vEid~ 61 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR-A-KKVYAIELDP 61 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh-C-CEEEEEECCH
Confidence 457899999999999999999998 3 3589998874
No 128
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.10 E-value=0.13 Score=50.91 Aligned_cols=35 Identities=0% Similarity=-0.133 Sum_probs=30.2
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|.+|||+|||.|-.+..++++ | -.|+|||+.+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G-~~V~gvD~S~~ 67 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G-HRVLGVELSEI 67 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C-CeEEEEeCCHH
Confidence 57889999999999999999986 3 34999999875
No 129
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=93.03 E-value=0.14 Score=49.37 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=27.8
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..+.+|||||||+|.|+..++.. +. .++++|+.+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-~~-~v~~iD~s~ 77 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-GA-NVTGIDASE 77 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-CC-eEEEEeCCH
Confidence 35889999999999999988875 33 488999864
No 130
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=92.99 E-value=0.086 Score=54.14 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=31.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.++.+|||||||+|.++..++.+.....|+++|+.+-
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~ 156 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPD 156 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHH
Confidence 3567999999999999999999876667999999753
No 131
>PHA03411 putative methyltransferase; Provisional
Probab=92.85 E-value=0.11 Score=54.16 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+.+|||||||+|.++..++.+.+...|++||+.+-
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~ 99 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE 99 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 457999999999999999888765567999999864
No 132
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.80 E-value=0.11 Score=55.14 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=31.6
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC-Ce-EEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA-SS-IIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~-~~-vv~vD~~~ 244 (547)
..||.+|||+||||||=|-.+++.+.. .. |+++|+.+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~ 192 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP 192 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH
Confidence 578999999999999999999999865 23 48999874
No 133
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.69 E-value=0.092 Score=54.56 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=29.9
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|.+|..+++.. ..|++||+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~ 68 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDP 68 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCH
Confidence 4688999999999999999999873 3589998874
No 134
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.68 E-value=0.11 Score=56.36 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|||||||+|.++..++... ..|++||+.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~ 69 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIE 69 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCH
Confidence 367899999999999999999873 3589999865
No 135
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.67 E-value=0.17 Score=51.10 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
++..|||+|+|||.||+.+++.. ..+++|+..+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~ 62 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDP 62 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSH
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcH
Confidence 89999999999999999999985 5688887764
No 136
>KOG2198|consensus
Probab=92.39 E-value=0.11 Score=55.80 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=30.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC----eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS----SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~----~vv~vD~~~ 244 (547)
++||++|||+||||||=|-.+.+.+... -|+|-|..+
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~ 193 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDP 193 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCH
Confidence 5899999999999999997777776533 578888764
No 137
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=92.36 E-value=0.19 Score=52.12 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||||||+|.++..++.+ + ..|+|||+.+-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~-~~V~gvD~s~~ 206 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-G-MQLTGIEISAE 206 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-C-CEEEEEeCCHH
Confidence 5789999999999999999985 3 46999998753
No 138
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=92.26 E-value=0.2 Score=48.72 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=28.8
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..++.+|||||||+|.++..++.. + ..++++|+.+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~ 80 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-G-ADVTGIDASE 80 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCH
Confidence 457899999999999999888875 3 3488999864
No 139
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=92.16 E-value=0.2 Score=50.63 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.6
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||||||+|..+-.++...+...|++||+.+-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~ 121 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA 121 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH
Confidence 346899999999999999988876667899999864
No 140
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.14 E-value=0.14 Score=45.88 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=27.8
Q ss_pred eeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 213 VCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 213 ~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+|||+||+.|.|+..++...+...+++|+..|-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 589999999999999998755557899998754
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=92.04 E-value=0.13 Score=55.65 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|.+||||||++|+|+-.++.. |+..|++||+.+-
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~ 254 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQE 254 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHH
Confidence 46899999999999998766643 6667999999864
No 142
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=92.02 E-value=0.14 Score=55.52 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..+..|||||||+|.++..++.+.+...++|||+.+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~ 156 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHT 156 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCH
Confidence 346799999999999999999998767799999974
No 143
>KOG1499|consensus
Probab=91.90 E-value=0.18 Score=53.87 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
+..|.+|||+|||+|=-|+.+++. |+..|+|||...|.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA 95 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH
Confidence 778999999999999999999997 78889999887653
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.80 E-value=0.25 Score=53.75 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=30.8
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+|.+|||||||+|.++..++... ..|++||+.+-
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~ 330 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEA 330 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHH
Confidence 4688999999999999999998874 46899999863
No 145
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=91.76 E-value=0.26 Score=51.39 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=28.9
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.+|.+|||+|||+|+++..++.. + ..++|+|+.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~-~~v~g~Di~~ 214 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-G-AKVIGCDIDW 214 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-C-CeEEEEcCCH
Confidence 578999999999999999776653 3 4589999976
No 146
>KOG3420|consensus
Probab=91.53 E-value=0.055 Score=52.05 Aligned_cols=68 Identities=22% Similarity=0.121 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccccCCCcc------hhHHHhhccccc
Q psy3133 195 AFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKHPSTT------VEIQECCKDIRV 264 (547)
Q Consensus 195 a~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~~~p~~~------~~i~~~~~Di~v 264 (547)
|.=|.-|...|+=+ -|+.++|||||.|--+ .+....+...|+|||+-|-.+...+. ..|..+|+|+..
T Consensus 34 asM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs-~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild 107 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDI-EGKKLKDLGCGCGMLS-IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD 107 (185)
T ss_pred HHHHHHHHhhhccc-cCcchhhhcCchhhhH-HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence 33455566666633 5799999999999888 77777778889999998765332221 134556666554
No 147
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=91.41 E-value=0.27 Score=48.39 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|.+|||||||.|..+-.++.+ ++..|++||..+-
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~ 87 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRA 87 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHH
Confidence 46789999999999999876665 4457899998753
No 148
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=91.08 E-value=0.49 Score=57.58 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=61.1
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEe-ccCcC-HHHHHHHHHcccCeEEEecCCC
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKV-FRSKD-YTSLLWIFKQLFQRVHSTKPQA 96 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KV-Frg~d-~~~Ll~~lkqlF~kV~~~KP~A 96 (547)
++-+.+|=||----+.|.- |--.+.+++.+.|..|+++..+||++|+|+ |-... ...|...+...|..++++||-=
T Consensus 567 TGtf~fVYSDVDQV~dg~~--dl~As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivKPlI 644 (1289)
T PF06016_consen 567 TGTFTFVYSDVDQVQDGGD--DLVASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVKPLI 644 (1289)
T ss_dssp ---EEEEEEE-----SSTT--THHHHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEEEES
T ss_pred CCceEEEEecchhhccCCc--chhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEeccee
Confidence 3445555555543333333 444677888899999999999999999999 76665 5788889999999999999975
Q ss_pred CCCCCceEEEEEeec
Q psy3133 97 SRKESAEIFVVCQHY 111 (547)
Q Consensus 97 SR~~SsEiYvVC~gf 111 (547)
.+|.|+|+|.-+.
T Consensus 645 --~NNvEvflv~~~~ 657 (1289)
T PF06016_consen 645 --VNNVEVFLVFGGR 657 (1289)
T ss_dssp --SSS--EEEEECEC
T ss_pred --ecceEEEEEEEee
Confidence 4789999994443
No 149
>PLN02366 spermidine synthase
Probab=91.03 E-value=1.1 Score=47.21 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=55.5
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHH-HHHHHHHHHhhccCCCEEEEE----eccCcCHHHHHHHHHccc-CeEEEe
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCL-TLGALKLASGILKEGGWFVTK----VFRSKDYTSLLWIFKQLF-QRVHST 92 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L-~~~AL~LA~~~Lr~GGtFV~K----VFrg~d~~~Ll~~lkqlF-~kV~~~ 92 (547)
..++|+|++|.....+. . ..| ....+..+...|+|||.||+= .+....+..++..|++.| ..|..+
T Consensus 163 ~~~yDvIi~D~~dp~~~--~------~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~ 234 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGP--A------QELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYA 234 (308)
T ss_pred CCCCCEEEEcCCCCCCc--h------hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEE
Confidence 45799999998654431 1 112 234456778899999999873 334445778899999999 566553
Q ss_pred c-CCCCCCCCceEEEEEee
Q psy3133 93 K-PQASRKESAEIFVVCQH 110 (547)
Q Consensus 93 K-P~ASR~~SsEiYvVC~g 110 (547)
- .-.|-....=-|++|..
T Consensus 235 ~~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 235 WTTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred EecCCCcCCCceEEEEEEC
Confidence 2 44555555556788854
No 150
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.02 E-value=0.18 Score=52.63 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=29.8
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|||||||+|.++-.++...+...|+++|+.+-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~ 168 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD 168 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH
Confidence 6899999999999999998876667999999753
No 151
>PLN03075 nicotianamine synthase; Provisional
Probab=90.97 E-value=0.34 Score=50.78 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCCeeeecCCCCCchHHH-HHHhh-cCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQV-AKQNM-MASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqv-a~~~~-g~~~vv~vD~~~ 244 (547)
+..+|+|+|||||+.|-. ++... ..+.++++|..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~ 159 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP 159 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence 779999999999987554 44444 444678999986
No 152
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.85 E-value=0.21 Score=57.67 Aligned_cols=36 Identities=25% Similarity=0.102 Sum_probs=31.4
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|.+||||||++|+++-.++.. |+..|++||+.+-
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~ 572 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNT 572 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHH
Confidence 46899999999999999999985 6667999999853
No 153
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.75 E-value=0.22 Score=55.42 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=30.8
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||||||+|..+..++...+...|+++|+.+-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~ 173 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLD 173 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHH
Confidence 357899999999999998888877677999999863
No 154
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=90.56 E-value=0.16 Score=55.21 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=41.2
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc---------ccCCCcchhHHHhhccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV---------LKHPSTTVEIQECCKDIRV 264 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~---------~~~p~~~~~i~~~~~Di~v 264 (547)
.|++||||-|-|||||-+|+.. |++.|++||+..- .++..+...+.|+++|+.-
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 3999999999999999999886 7878999999732 2344444556777766544
No 155
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=90.29 E-value=0.35 Score=49.38 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=29.8
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+|||||||+|..+..++...+...|+++|+.+-
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~ 149 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPD 149 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHH
Confidence 36899999999999999988866567999999763
No 156
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=90.19 E-value=0.5 Score=48.12 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=28.0
Q ss_pred CCCCeeeecCCCCCc----hHHHHHHhhcC-----CeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGG----WMQVAKQNMMA-----SSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGg----Wsqva~~~~g~-----~~vv~vD~~~~ 245 (547)
.++.+|+|+|||+|. ++..+++..+. ..|+|+|+.+-
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~ 143 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK 143 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence 456899999999995 66677776542 35889999863
No 157
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=90.14 E-value=0.13 Score=50.55 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=39.9
Q ss_pred CcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccccCCCcchhHHHhhcccc
Q psy3133 207 FLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVLKHPSTTVEIQECCKDIR 263 (547)
Q Consensus 207 l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~~~p~~~~~i~~~~~Di~ 263 (547)
-+.+..+|||||+|.|.|+.-+++..+.-.++.+|+..+........+|.+..+|+.
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f 153 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF 153 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH
Confidence 356668999999999999999999988777888999765422112455666666664
No 158
>PRK04266 fibrillarin; Provisional
Probab=90.12 E-value=1.3 Score=44.28 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=43.5
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEecc-C-----c---CHHHHHHHHHcc-cCeEE
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFR-S-----K---DYTSLLWIFKQL-FQRVH 90 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFr-g-----~---d~~~Ll~~lkql-F~kV~ 90 (547)
++|+|+||++. .+ + ...+|..+..+|+|||.||+=+.. + . .+...+..|.+. |+.+.
T Consensus 141 ~~D~i~~d~~~-------p~---~---~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 141 KVDVIYQDVAQ-------PN---Q---AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred cCCEEEECCCC-------hh---H---HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 59999999752 11 1 133567788899999999983321 1 1 233445566554 88777
Q ss_pred EecCCCCCCCCceEEEEEe
Q psy3133 91 STKPQASRKESAEIFVVCQ 109 (547)
Q Consensus 91 ~~KP~ASR~~SsEiYvVC~ 109 (547)
..-.. .-.-..+.+|++
T Consensus 208 ~~~l~--p~~~~h~~~v~~ 224 (226)
T PRK04266 208 VVDLE--PYHKDHAAVVAR 224 (226)
T ss_pred EEcCC--CCcCCeEEEEEE
Confidence 76542 122245556654
No 159
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=90.02 E-value=0.48 Score=44.68 Aligned_cols=44 Identities=32% Similarity=0.399 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEeccC-cCHHHHHHHHHcccCeEEEec
Q psy3133 46 CLTLGALKLASGILKEGGWFVTKVFRS-KDYTSLLWIFKQLFQRVHSTK 93 (547)
Q Consensus 46 ~L~~~AL~LA~~~Lr~GGtFV~KVFrg-~d~~~Ll~~lkqlF~kV~~~K 93 (547)
.+...-+.-|..+|+|||.|++ ++.. ..+..+ ++++|..|++.+
T Consensus 117 ~~~~~~i~~a~~~Lk~~G~l~l-v~~~~~~~~~~---l~~~f~~~~~~~ 161 (170)
T PF05175_consen 117 DLLRDFIEQARRYLKPGGRLFL-VINSHLGYERL---LKELFGDVEVVA 161 (170)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEE-EEETTSCHHHH---HHHHHS--EEEE
T ss_pred hhHHHHHHHHHHhccCCCEEEE-EeecCCChHHH---HHHhcCCEEEEE
Confidence 3445557778999999999988 5554 345555 899999988764
No 160
>PRK00536 speE spermidine synthase; Provisional
Probab=90.00 E-value=0.6 Score=48.15 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=43.4
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEE----eccCcCHHHHHHHHHcccCeEEEec
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTK----VFRSKDYTSLLWIFKQLFQRVHSTK 93 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~K----VFrg~d~~~Ll~~lkqlF~kV~~~K 93 (547)
.++||||.|..|. .+- ...+.+.|++||.||+- .|+...+..+...+++.|..|..+-
T Consensus 138 ~~fDVIIvDs~~~------~~f----------y~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~ 199 (262)
T PRK00536 138 KKYDLIICLQEPD------IHK----------IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFV 199 (262)
T ss_pred CcCCEEEEcCCCC------hHH----------HHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEE
Confidence 5799999997644 111 24567889999999993 4554557888999999999877664
No 161
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=89.61 E-value=0.48 Score=46.76 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=28.9
Q ss_pred cCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 205 FEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 205 f~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
..++. +.+|||||||.|.=+.+++++ | -.|.+||..+.
T Consensus 26 ~~~~~-~g~~LDlgcG~GRNalyLA~~-G-~~VtAvD~s~~ 63 (192)
T PF03848_consen 26 VPLLK-PGKALDLGCGEGRNALYLASQ-G-FDVTAVDISPV 63 (192)
T ss_dssp CTTS--SSEEEEES-TTSHHHHHHHHT-T--EEEEEESSHH
T ss_pred HhhcC-CCcEEEcCCCCcHHHHHHHHC-C-CeEEEEECCHH
Confidence 45555 469999999999999999998 2 24889998865
No 162
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=89.56 E-value=1.1 Score=48.76 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=50.7
Q ss_pred CcccEEecCCCCCCCCChh--h---------hHHHHHHHHHHHHHHHHhhccCCCEEE---EEeccCcCHHHHHHHHHcc
Q psy3133 20 WKVDVVLHDGSPNVGMNWV--Y---------DAYHQCCLTLGALKLASGILKEGGWFV---TKVFRSKDYTSLLWIFKQL 85 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~--~---------D~~~q~~L~~~AL~LA~~~Lr~GGtFV---~KVFrg~d~~~Ll~~lkql 85 (547)
..||+||+|.-..-+|.+. . +...-..|-...|.-|..+|+|||.|| |=++.......+.+.++++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 4699999997322223321 1 111222344566778889999999998 4556556666677777764
Q ss_pred --cCeEEEecCCC---CCCCCceEEEEEee
Q psy3133 86 --FQRVHSTKPQA---SRKESAEIFVVCQH 110 (547)
Q Consensus 86 --F~kV~~~KP~A---SR~~SsEiYvVC~g 110 (547)
|. +..|.. ......+-|++|+=
T Consensus 404 ~~~~---~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 404 PDWK---LEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred CCcE---ecCCCCccCCCCCCCCcEEEEEE
Confidence 44 222210 12234677777753
No 163
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=89.21 E-value=0.27 Score=50.39 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=42.1
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc---------cCCCcchhHHHhhccccccC
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL---------KHPSTTVEIQECCKDIRVLG 266 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~---------~~p~~~~~i~~~~~Di~vl~ 266 (547)
...+|||||||.|.=+-.++++.....+++|++.+-. ..+ -...|..++.|++.+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFL 108 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhh
Confidence 3789999999999999999999877779999998522 222 2345667777777643
No 164
>KOG1122|consensus
Probab=88.94 E-value=0.34 Score=53.19 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=30.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeE-Eeeccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSI-IHFDDE 243 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~v-v~vD~~ 243 (547)
..+|.+|||+||||||=|-+++..|...++ +|.|..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n 275 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSN 275 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccc
Confidence 478999999999999999999999876654 688854
No 165
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=88.85 E-value=0.51 Score=46.75 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 206 EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 206 ~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
.++.+|.+|||+.||-|.|+-.++....+..|+|+|++|-.
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a 137 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA 137 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH
Confidence 45789999999999999999999986666679999999743
No 166
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=88.32 E-value=0.48 Score=48.55 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=29.7
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|.+|||+|||=|.-|+=+++. | ..|.++|+.+-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G-a~VtgiD~se~ 92 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G-ASVTGIDASEK 92 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C-CeeEEecCChH
Confidence 68999999999999888888876 4 45999999853
No 167
>PRK04457 spermidine synthase; Provisional
Probab=88.22 E-value=0.48 Score=48.24 Aligned_cols=36 Identities=3% Similarity=0.038 Sum_probs=31.5
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++.+|||||||.|..+..++...+...+++||+.|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp 100 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP 100 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH
Confidence 456899999999999999999888777789999975
No 168
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=87.86 E-value=0.78 Score=49.48 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=30.0
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.++.+|||||||+|..+-.++... ..|++||+.+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~ 324 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVP 324 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCH
Confidence 4677999999999999999998863 4689999875
No 169
>PRK01581 speE spermidine synthase; Validated
Probab=87.82 E-value=2.5 Score=45.89 Aligned_cols=84 Identities=20% Similarity=0.120 Sum_probs=50.7
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCc-----CHHHHHHHHHcccCeEEEec
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK-----DYTSLLWIFKQLFQRVHSTK 93 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~-----d~~~Ll~~lkqlF~kV~~~K 93 (547)
..++|||++|. |+..+... ..-.....+..+...|+|||.||+=. .++ .+..+...|++.|-.|..+.
T Consensus 224 ~~~YDVIIvDl-~DP~~~~~-----~~LyT~EFy~~~~~~LkPgGV~V~Qs-~sp~~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 224 SSLYDVIIIDF-PDPATELL-----STLYTSELFARIATFLTEDGAFVCQS-NSPADAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred CCCccEEEEcC-CCccccch-----hhhhHHHHHHHHHHhcCCCcEEEEec-CChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence 35799999995 33222111 11122445677889999999998842 111 23456677888888888666
Q ss_pred -CCCCCCCCceEEEEEee
Q psy3133 94 -PQASRKESAEIFVVCQH 110 (547)
Q Consensus 94 -P~ASR~~SsEiYvVC~g 110 (547)
..+|- .+.=-|++|..
T Consensus 297 t~vPsy-g~~WgF~~as~ 313 (374)
T PRK01581 297 TIVPSF-GTDWGFHIAAN 313 (374)
T ss_pred EecCCC-CCceEEEEEeC
Confidence 33343 33355777754
No 170
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=87.62 E-value=0.65 Score=45.93 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=29.6
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
++||++++|+|||+|+-+--++ ++++. .|++||-.+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~ 68 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDE 68 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCH
Confidence 6899999999999999988888 55554 588998643
No 171
>PRK04148 hypothetical protein; Provisional
Probab=87.43 E-value=0.37 Score=45.20 Aligned_cols=34 Identities=21% Similarity=0.012 Sum_probs=26.9
Q ss_pred CCCeeeecCCCCCc-hHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGG-WMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGg-Wsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+.+|||+|||+|. .+..+.+. | ..|+++|+.+-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G-~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-G-FDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-C-CEEEEEECCHH
Confidence 56899999999885 77777754 4 35899999865
No 172
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=87.14 E-value=0.61 Score=51.21 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=31.2
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.++.+|||||||+|.-+-.++...+...|+++|+.+-
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ 286 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPP 286 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH
Confidence 34677999999999999988877666667899999764
No 173
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=86.81 E-value=0.82 Score=44.70 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=27.4
Q ss_pred eeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 213 VCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 213 ~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+||||||-|.|..-++..-+...+||||+..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~ 51 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRK 51 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-H
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecch
Confidence 89999999999999999998877789999874
No 174
>PRK04457 spermidine synthase; Provisional
Probab=86.72 E-value=3 Score=42.50 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=44.7
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccC-cCHHHHHHHHHcccCe-EEEe
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRS-KDYTSLLWIFKQLFQR-VHST 92 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg-~d~~~Ll~~lkqlF~k-V~~~ 92 (547)
.++|+|++|+-.. .+.. .+.. ....+..+...|+|||.||+=++.. ..+..++..+++.|.. +.++
T Consensus 135 ~~yD~I~~D~~~~-~~~~--~~l~----t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~ 202 (262)
T PRK04457 135 HSTDVILVDGFDG-EGII--DALC----TQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLEL 202 (262)
T ss_pred CCCCEEEEeCCCC-CCCc--cccC----cHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEE
Confidence 4789999986221 1111 1111 2455677889999999999977655 3578889999999985 4454
No 175
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=86.69 E-value=1.5 Score=47.44 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=43.4
Q ss_pred CCcccEEecCCCCCCCCChh-----------hhHHHHHHHHHHHHHHHHhhccCCCEEEEE---eccCcCHHHHHHHHHc
Q psy3133 19 TWKVDVVLHDGSPNVGMNWV-----------YDAYHQCCLTLGALKLASGILKEGGWFVTK---VFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~-----------~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~K---VFrg~d~~~Ll~~lkq 84 (547)
...||+|++|....-+|.+. .+...-..|-...|.-|..+|+|||.||.= ++.......+.+.+.+
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 34699999998555445421 122333455667778889999999999954 4444555656666665
No 176
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.47 E-value=0.87 Score=46.72 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
=|.||..+..-+.| .+|||+|||||..+.-+.+..+. ..+++||..+
T Consensus 21 vl~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~ 68 (274)
T PF09243_consen 21 VLSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP 68 (274)
T ss_pred HHHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhcCceeeeeecCCH
Confidence 36777777654555 58999999999988887776652 2467888764
No 177
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=86.36 E-value=0.84 Score=48.76 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=28.6
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||||||.|.++..++.+ + ..|++||+.+-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~ 266 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESE 266 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHH
Confidence 5689999999999999998865 3 46999998864
No 178
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=86.25 E-value=4.3 Score=40.42 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc-ccCeEEEecCCCCCCCCceEEEEE
Q psy3133 46 CLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ-LFQRVHSTKPQASRKESAEIFVVC 108 (547)
Q Consensus 46 ~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq-lF~kV~~~KP~ASR~~SsEiYvVC 108 (547)
.+....+.-|..+|++||.|++-+ .......+...|.. -|..|.+++..+. .+.++++
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~~gf~~v~~~~d~~~----~~r~~~~ 273 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAAAGFADVETRKDLAG----RDRVVLG 273 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHhCCCceeEEecCCCC----CceEEEE
Confidence 445566777889999999999844 11223345555543 4888888876653 4566665
No 179
>PRK00811 spermidine synthase; Provisional
Probab=86.17 E-value=0.63 Score=47.86 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
...+||+||||.|+.+..++.+.+...|++||+.+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~ 111 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER 111 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH
Confidence 457999999999999999988756667899998763
No 180
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=85.99 E-value=2 Score=44.10 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=43.1
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEe
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHST 92 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~ 92 (547)
.+||+|+++... +. ....+.-+..+|+|||.||+--+.......+...+.+.|.-+...
T Consensus 224 ~~fDlVvan~~~--------~~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 224 GKADVIVANILA--------EV------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred CCceEEEEecCH--------HH------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEe
Confidence 468888876421 11 123456678999999999998887777888888888888777654
No 181
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=85.97 E-value=1.5 Score=44.43 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=57.9
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEe----ccCcCHHHHHHHHHcccCeEEEec-CC
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKV----FRSKDYTSLLWIFKQLFQRVHSTK-PQ 95 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KV----Frg~d~~~Ll~~lkqlF~kV~~~K-P~ 95 (547)
++|+|+.|.....+-... -....-+..+...|++||.||+-. ++...+..+...|++.|..|..+- |-
T Consensus 150 ~yDvIi~D~~dp~~~~~~-------l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~v 222 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPN-------LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYV 222 (246)
T ss_dssp -EEEEEEESSSTTSCGGG-------GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred cccEEEEeCCCCCCCccc-------ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEc
Confidence 799999999654432222 223344667889999999999976 122245667888999999888765 55
Q ss_pred CCCCCCceEEEEEeecc
Q psy3133 96 ASRKESAEIFVVCQHYI 112 (547)
Q Consensus 96 ASR~~SsEiYvVC~gfk 112 (547)
+|=.+.-=.|.+|.+-.
T Consensus 223 P~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 223 PSYGSGWWSFASASKDI 239 (246)
T ss_dssp TTSCSSEEEEEEEESST
T ss_pred CeecccceeEEEEeCCC
Confidence 56555555677777654
No 182
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=85.73 E-value=0.79 Score=48.55 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=39.0
Q ss_pred cchhHH--HHHHHHHhc--CCc--CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 191 RSRAAF--KLIQLNRKF--EFL--QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 191 ~sRaa~--KL~ei~~kf--~l~--~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
+.|+-| -|..+...- +.+ .++.+|||||||.|+-.-.++.+...-.++|+|+.+..
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~A 150 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQA 150 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHH
Confidence 557777 333443322 122 35689999999999988888777665678999998753
No 183
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=85.70 E-value=1.2 Score=44.27 Aligned_cols=35 Identities=3% Similarity=-0.120 Sum_probs=29.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|.+|||+|||.|-=+..++++ | -.|+|||+.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~-G-~~V~avD~s~~ 70 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ-G-HEVLGVELSEL 70 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC-C-CeEEEEccCHH
Confidence 56789999999999999999886 3 34999999865
No 184
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=85.64 E-value=0.39 Score=50.86 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCCeeeecCCCCCc----hHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGG----WMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGg----Wsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||||||-|| |... +...+||+|+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~ 96 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEE 96 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HH
T ss_pred CCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHH
Confidence 89999999999999 6543 4455899999754
No 185
>KOG1540|consensus
Probab=85.49 E-value=0.65 Score=48.33 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcC------CeEEeecccc-cc---------cCCCcchhHHHhhccccccC
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMA------SSIIHFDDES-VL---------KHPSTTVEIQECCKDIRVLG 266 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~------~~vv~vD~~~-~~---------~~p~~~~~i~~~~~Di~vl~ 266 (547)
.+|++|||+|||+|--+--+++.++. +.|+++|++| |. .+-.....+.|+|+|...|+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 35799999999999988888888776 6788999986 21 12223345778887777644
No 186
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=84.74 E-value=0.82 Score=45.67 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=24.3
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.++|++|||-|..|.-++.+. ..++++|+.+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~ 75 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISP 75 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE--EEEEEEES-H
T ss_pred ceeEecCCCccHHHHHHHHhh--CceEEEeCCH
Confidence 689999999999999999985 3488999875
No 187
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=84.71 E-value=1.9 Score=41.10 Aligned_cols=52 Identities=21% Similarity=0.069 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHh------cCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 193 RAAFKLIQLNRK------FEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 193 Raa~KL~ei~~k------f~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.|++=|.+.... .....+|.+||+||||.|==+-+++...++..|+.-|..+
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE 79 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch
Confidence 345555555555 3456789999999999986566666654666788888765
No 188
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=84.42 E-value=2.6 Score=43.96 Aligned_cols=57 Identities=26% Similarity=0.220 Sum_probs=36.0
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHH
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSL 78 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~L 78 (547)
..+|+|++|. ..+............|....|..+.++|+|||++|+-+-...+...+
T Consensus 247 ~~~D~Iv~dP--Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 247 ESVDAIATDP--PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred CCCCEEEECC--CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 5789999993 22211111111233566778888999999999999876555454433
No 189
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=84.33 E-value=2.1 Score=39.25 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=31.1
Q ss_pred CCcCCCCeeeecCCCCCchHHHHHHhh----cCCeEEeecccc
Q psy3133 206 EFLQKSKVCVDLCAAPGGWMQVAKQNM----MASSIIHFDDES 244 (547)
Q Consensus 206 ~l~~~g~~VlDLGaaPGgWsqva~~~~----g~~~vv~vD~~~ 244 (547)
.-..+...|||+|||-|.-+++++..+ ....|++||..+
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 445678999999999999999999933 334588999774
No 190
>PHA03412 putative methyltransferase; Provisional
Probab=83.30 E-value=0.83 Score=46.76 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=29.4
Q ss_pred CCeeeecCCCCCchHHHHHHhhc---CCeEEeecccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMM---ASSIIHFDDESVL 246 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g---~~~vv~vD~~~~~ 246 (547)
+.+|||+|||+|..+-.++.++. ...|++||+.+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~A 88 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTY 88 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHH
Confidence 67999999999999998888753 2358899998643
No 191
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=83.11 E-value=1.3 Score=43.04 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
-.|.+||||.||+|+-.-.|+.| |+..|+.||..+-
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~ 76 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRK 76 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HH
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHH
Confidence 57999999999999999999998 7888999998753
No 192
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=83.01 E-value=1.9 Score=36.94 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.0
Q ss_pred HHHHHHHhhccCCCEEEEEe
Q psy3133 50 GALKLASGILKEGGWFVTKV 69 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KV 69 (547)
..+..+.++|+|||+||+=+
T Consensus 103 ~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 103 EILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHcCCCCEEEEEe
Confidence 66888999999999998743
No 193
>KOG3673|consensus
Probab=83.01 E-value=0.59 Score=52.71 Aligned_cols=54 Identities=22% Similarity=0.513 Sum_probs=40.6
Q ss_pred cCChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCC------CC-----------eeeecCCCCCchHHHHHHh
Q psy3133 173 HETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQK------SK-----------VCVDLCAAPGGWMQVAKQN 231 (547)
Q Consensus 173 ~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~------g~-----------~VlDLGaaPGgWsqva~~~ 231 (547)
|.+||...... -|..|||.|..-++.-|+.+.- |. .--|+||||||||.|++=+
T Consensus 218 RaNPyEtIrs~-----fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 218 RANPYETIRSA-----FFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWR 288 (845)
T ss_pred cCChHHHHHHH-----HHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhh
Confidence 46788754443 4889999999999999987421 22 1248999999999998754
No 194
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=82.24 E-value=1.3 Score=45.21 Aligned_cols=37 Identities=3% Similarity=0.158 Sum_probs=28.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
++||++||+-|.|.|++|-.++..+|+. .|+.+|...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~ 75 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE 75 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH
Confidence 6899999999999999999999999865 477888763
No 195
>PLN02823 spermine synthase
Probab=82.04 E-value=2.9 Score=44.51 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=53.7
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHH-HHHhhccCCCEEEEEe-----ccC-cCHHHHHHHHHcccCeEEE
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALK-LASGILKEGGWFVTKV-----FRS-KDYTSLLWIFKQLFQRVHS 91 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~-LA~~~Lr~GGtFV~KV-----Frg-~d~~~Ll~~lkqlF~kV~~ 91 (547)
..++|||+.|..-.+++.....- .....+. .+...|+|||.||+-+ |.. ..+..++..|++.|..|..
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~L-----yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~ 248 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQL-----YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVP 248 (336)
T ss_pred CCCccEEEecCCCccccCcchhh-----ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEE
Confidence 35799999997433322111111 1112234 5668999999999853 222 2367788999999999998
Q ss_pred ec-CCCCCCCCceEEEEEee
Q psy3133 92 TK-PQASRKESAEIFVVCQH 110 (547)
Q Consensus 92 ~K-P~ASR~~SsEiYvVC~g 110 (547)
+. .-.|-.. .=-|++|..
T Consensus 249 y~~~vPsf~~-~w~f~~aS~ 267 (336)
T PLN02823 249 YTAHVPSFAD-TWGWVMASD 267 (336)
T ss_pred EEeecCCCCC-ceEEEEEeC
Confidence 87 3344433 346778764
No 196
>KOG2899|consensus
Probab=81.54 E-value=1.4 Score=45.80 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=33.2
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+..|||+||-.|--|+-++...|+..++|||+.+.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~ 93 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV 93 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHH
Confidence 468899999999999999999999999999999875
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=81.41 E-value=5.2 Score=41.77 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=60.2
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEE---ec-cCcCHHHHHHHHHcccCeEEEec-CC
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTK---VF-RSKDYTSLLWIFKQLFQRVHSTK-PQ 95 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~K---VF-rg~d~~~Ll~~lkqlF~kV~~~K-P~ 95 (547)
++|||++|.-+.+|-........ =...+.+.|+++|.||+= .| +...+......++..|..+..+- |-
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft~e-------Fy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~i 221 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFTEE-------FYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPI 221 (282)
T ss_pred cCCEEEEcCCCCCCcccccCCHH-------HHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceecc
Confidence 79999999987765434333322 234566789999999997 33 22345677888888898887765 66
Q ss_pred CCCCCCceEEEEEeecc
Q psy3133 96 ASRKESAEIFVVCQHYI 112 (547)
Q Consensus 96 ASR~~SsEiYvVC~gfk 112 (547)
.+-......|+||....
T Consensus 222 pt~~~g~~~f~~~s~~~ 238 (282)
T COG0421 222 PTYPSGFWGFIVASFNK 238 (282)
T ss_pred ceecCCceEEEEeecCC
Confidence 66667778899998553
No 198
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=81.06 E-value=7.3 Score=37.50 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=12.5
Q ss_pred HHHHhhhhHHHHHhHHhhh
Q psy3133 268 KDVRNLLKWWKVLHDEKTE 286 (547)
Q Consensus 268 ~~~r~LlkWr~~l~d~~~~ 286 (547)
.-++|-.++|..+......
T Consensus 82 ~LLKWR~kir~~~~~~~~~ 100 (159)
T PF11861_consen 82 QLLKWRKKIRKELGKDKKE 100 (159)
T ss_pred HHHHHHHHHHHHHhHhhhc
Confidence 3567777888877665533
No 199
>KOG1270|consensus
Probab=80.66 E-value=1.4 Score=45.88 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=27.0
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
|+.|||+|||.|=-|+=++.. | ..|+|||+.+.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-g-a~V~GID~s~~ 122 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-G-AQVTGIDASDD 122 (282)
T ss_pred CceEEEeccCccccchhhHhh-C-CeeEeecccHH
Confidence 488999999999888888876 4 34899998753
No 200
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=80.51 E-value=2 Score=45.38 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=33.9
Q ss_pred HhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 203 RKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 203 ~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
+.+.....| +|||||||-|-=.-++++..+...+..||+..+.
T Consensus 152 ~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A 194 (300)
T COG2813 152 ETLPPDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA 194 (300)
T ss_pred HhCCccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence 344444455 9999999999999999999876778889988654
No 201
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.43 E-value=2.8 Score=43.17 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=39.2
Q ss_pred HHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhc-----CCeEEeeccc
Q psy3133 198 LIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMM-----ASSIIHFDDE 243 (547)
Q Consensus 198 L~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g-----~~~vv~vD~~ 243 (547)
|+...++.+++.+...+|++|||.|.-|.++++.+. ....+.||-.
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 788899999999999999999999999999998873 3356777765
No 202
>KOG0820|consensus
Probab=80.37 E-value=1.9 Score=45.35 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=29.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
++++++||.+|.|||.-|+.+++. +..|||+.+.|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dp 90 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDP 90 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCc
Confidence 589999999999999999999997 33488876543
No 203
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=80.29 E-value=1.4 Score=46.81 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=26.4
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+|||||||+|.++-.++... ..|++||..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~ 229 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAK 229 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCH
Confidence 479999999999999887764 3699999875
No 204
>PLN02672 methionine S-methyltransferase
Probab=80.08 E-value=1.3 Score=53.89 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=31.2
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+|.+|||||||+|.-+-.++...+...|++||+.+.
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~ 153 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR 153 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH
Confidence 357999999999999999998876667999999874
No 205
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.70 E-value=2 Score=43.23 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=30.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
+++|++||++|||.|-=+-|+++.++ .|++|+.-
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~ 103 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERI 103 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEc
Confidence 68999999999999999999999987 58888765
No 206
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=79.62 E-value=1.7 Score=44.17 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=28.5
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
...+||+||||.|+.+..++...+...+++||+.+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~ 106 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE 106 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH
Confidence 34699999999999998888775556688888865
No 207
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=79.37 E-value=8.8 Score=37.39 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHH-cccCeEEEecCCCCC
Q psy3133 47 LTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFK-QLFQRVHSTKPQASR 98 (547)
Q Consensus 47 L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lk-qlF~kV~~~KP~ASR 98 (547)
.....+..+..+|++||+|++=+ .-.....+...|. .-|..|.+++..+.|
T Consensus 195 ~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 195 FYRRIIAQAPRLLKPGGWLLLEI-GYDQGEAVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred HHHHHHHHHHHhcccCCEEEEEE-CccHHHHHHHHHHhCCCCceEEEeCCCCC
Confidence 34466778889999999998743 1122344554444 358899988877654
No 208
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=79.12 E-value=1.9 Score=45.01 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=28.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..|.+||||-|-+||||-.|+. .|+..|++||...
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~ 156 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSK 156 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-H
T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCH
Confidence 3689999999999999998875 4778899999963
No 209
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=78.98 E-value=3.1 Score=32.78 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEE
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTK 68 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~K 68 (547)
..++|+|++++..... .......+..+..+|++||.|++-
T Consensus 64 ~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3568999888753322 233445566677889999999875
No 210
>KOG3191|consensus
Probab=77.92 E-value=3.2 Score=41.53 Aligned_cols=36 Identities=8% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeE-Eeecccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSI-IHFDDESVL 246 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~v-v~vD~~~~~ 246 (547)
-..|++||||.|--|-.+++.+++..+ ++.|++|.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A 80 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEA 80 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHH
Confidence 578999999999999999998886654 799999865
No 211
>PRK03612 spermidine synthase; Provisional
Probab=77.63 E-value=4.6 Score=45.24 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=46.9
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHH-HHHHHHHHHhhccCCCEEEEEe----ccCcCHHHHHHHHHcc-cCeEEEec
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCL-TLGALKLASGILKEGGWFVTKV----FRSKDYTSLLWIFKQL-FQRVHSTK 93 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L-~~~AL~LA~~~Lr~GGtFV~KV----Frg~d~~~Ll~~lkql-F~kV~~~K 93 (547)
.++|+|++|.. +..+. .. ..| ....+..+.+.|+|||.||+=. ++...+..+...+++. | .|..+-
T Consensus 372 ~~fDvIi~D~~-~~~~~-~~-----~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~ 443 (521)
T PRK03612 372 EKFDVIIVDLP-DPSNP-AL-----GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYH 443 (521)
T ss_pred CCCCEEEEeCC-CCCCc-ch-----hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEE
Confidence 58999999953 21111 00 111 1234566778999999999843 3444566778888887 7 554432
Q ss_pred -CCCCCCCCceEEEEEee
Q psy3133 94 -PQASRKESAEIFVVCQH 110 (547)
Q Consensus 94 -P~ASR~~SsEiYvVC~g 110 (547)
...|- ..=-|++|..
T Consensus 444 ~~vps~--g~w~f~~as~ 459 (521)
T PRK03612 444 VNVPSF--GEWGFVLAGA 459 (521)
T ss_pred eCCCCc--chhHHHeeeC
Confidence 22232 1222666744
No 212
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=76.68 E-value=1.9 Score=44.58 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.4
Q ss_pred eeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 213 VCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 213 ~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+|||||||+|-=+-.++...+...|+++|+.|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~ 145 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPD 145 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHH
Confidence 799999999988888888766667999999874
No 213
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=76.56 E-value=2.7 Score=33.62 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=21.6
Q ss_pred eeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 214 CVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 214 VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
|+|+||++|.++ ++....+.. .++++|..+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~ 82 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP 82 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCH
Confidence 999999999998 555543332 467777765
No 214
>PRK14968 putative methyltransferase; Provisional
Probab=76.22 E-value=23 Score=32.70 Aligned_cols=44 Identities=16% Similarity=0.025 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEE
Q psy3133 48 TLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHS 91 (547)
Q Consensus 48 ~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~ 91 (547)
....+.-+..+|+|||.||+=+........+...+.+.--++..
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 44567778899999999988776555566777777765434433
No 215
>KOG1975|consensus
Probab=76.11 E-value=7.3 Score=42.07 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=57.0
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEecCCCCC
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASR 98 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~KP~ASR 98 (547)
..++|||-|==|..- ++.+.+=+..+|.-|..+|+|||.||.= -++-..+++.|+.. .+ +
T Consensus 194 dp~fDivScQF~~HY-------aFetee~ar~~l~Nva~~LkpGG~FIgT---iPdsd~Ii~rlr~~--e~--------~ 253 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHY-------AFETEESARIALRNVAKCLKPGGVFIGT---IPDSDVIIKRLRAG--EV--------E 253 (389)
T ss_pred CCCcceeeeeeeEee-------eeccHHHHHHHHHHHHhhcCCCcEEEEe---cCcHHHHHHHHHhc--cc--------h
Confidence 334777765444332 2344455667778889999999999863 47788899999986 22 2
Q ss_pred CCCceEEEEEeeccCCCCCCcccCChhhhhh
Q psy3133 99 KESAEIFVVCQHYIAPAKLDTKFFDPKYAFK 129 (547)
Q Consensus 99 ~~SsEiYvVC~gfk~p~~idp~llD~k~vF~ 129 (547)
.=+.+||-|--.-.-+...+.-++-.+|.|-
T Consensus 254 ~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~ 284 (389)
T KOG1975|consen 254 RFGNDIYKVTYEIEFQKEFDVPPFGAKYRFH 284 (389)
T ss_pred hhcceeeeEeeeeecccccCCCCccceEEEE
Confidence 3456776665543333344434555666664
No 216
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=75.96 E-value=2.2 Score=45.43 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=26.8
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+||||+||.|+++-.++... ..|++||..+-
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ 239 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKP 239 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHH
Confidence 3579999999999999777653 46999998753
No 217
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=75.51 E-value=3 Score=45.07 Aligned_cols=36 Identities=11% Similarity=-0.090 Sum_probs=31.2
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++.+|||++||.|..+-.++...+...|+++|+.+-
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~ 92 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPD 92 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHH
Confidence 357899999999999999988877667999999864
No 218
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=75.38 E-value=4.7 Score=40.08 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=27.7
Q ss_pred HHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 201 LNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 201 i~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+.+..+ +.++.+.+|||||-|.=.-.++-..+....+||.+.+-
T Consensus 34 il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~ 77 (205)
T PF08123_consen 34 ILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE 77 (205)
T ss_dssp HHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH
T ss_pred HHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH
Confidence 444555 57899999999999998666665557777889887754
No 219
>PRK03612 spermidine synthase; Provisional
Probab=75.37 E-value=2.6 Score=47.11 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=29.3
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+..+|||||||.|+++..++++-+...|++||+.+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~ 331 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP 331 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH
Confidence 456899999999999999988753336789999875
No 220
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=75.33 E-value=2.9 Score=35.43 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=24.9
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
.++|+|++.+ . +..+.... .-...+|.-+.+.|+|||.||+
T Consensus 69 ~~~D~v~~~~-~--~~~~~~~~----~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 69 EPFDLVICSG-F--TLHFLLPL----DERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp SCEEEEEECS-G--SGGGCCHH----HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-C--ccccccch----hHHHHHHHHHHHhcCCCcEEEE
Confidence 3578888877 2 11111111 2233446677799999999986
No 221
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=74.81 E-value=9.1 Score=40.77 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=42.0
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEe
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHST 92 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~ 92 (547)
.++|+|+|+-....+.... .......+.-|..+|+|||.|++=.-+.-.|..++ .++|..+++.
T Consensus 260 ~~fDlIvsNPPFH~g~~~~------~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l---~~~Fg~~~~l 323 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTS------LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLL---DETFGSHEVL 323 (342)
T ss_pred CCccEEEECCCccCCcccc------HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHH---HHHcCCeEEE
Confidence 4789999875332222221 23445557778899999999988666656677654 4568877765
No 222
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=74.02 E-value=16 Score=34.29 Aligned_cols=46 Identities=17% Similarity=-0.015 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEe
Q psy3133 47 LTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHST 92 (547)
Q Consensus 47 L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~ 92 (547)
+....+..+..+|+|||.|++=.........++..|++.--.++..
T Consensus 118 ~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 118 VIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 4556678888999999999885554455677777777654444443
No 223
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=73.88 E-value=8.3 Score=37.10 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.0
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEecCCCCCCC
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKE 100 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~KP~ASR~~ 100 (547)
..+..+..+|+|||.||+=+..-.....++..|+++.-.+.++....+|..
T Consensus 126 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 176 (198)
T PRK00377 126 EIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEITEVIIAKGM 176 (198)
T ss_pred HHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEEEEehhhcc
Confidence 457788899999999996332223446677777654336777776666653
No 224
>KOG1975|consensus
Probab=73.78 E-value=2 Score=46.17 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=26.7
Q ss_pred CCCCeeeecCCCCCc----hHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSKVCVDLCAAPGG----WMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~~VlDLGaaPGg----Wsqva~~~~g~~~vv~vD~~~~ 245 (547)
++|..|+|||||-|| |- ..|.+..||+|+..+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~-----kAgI~~~igiDIAev 151 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWD-----KAGIGEYIGIDIAEV 151 (389)
T ss_pred ccccccceeccCCcccHhHhh-----hhcccceEeeehhhc
Confidence 789999999999999 54 445566899999876
No 225
>KOG2651|consensus
Probab=73.58 E-value=3.6 Score=45.17 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 200 QLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 200 ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
|+......+-+-..|+|+|||+|.-|++++=..|-+ |++||=.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~ls-V~aIegs 185 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLS-VKAIEGS 185 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCce-EEEeccc
Confidence 333344445566999999999999999999876643 7787744
No 226
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=73.10 E-value=7.5 Score=39.48 Aligned_cols=48 Identities=23% Similarity=0.120 Sum_probs=30.5
Q ss_pred CcccEEecCCCCCCCCChh----------hhHH-HHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 20 WKVDVVLHDGSPNVGMNWV----------YDAY-HQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~----------~D~~-~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
..||+||+|.-..-+|.+. .+.. ....+....|.-|..+|+|||.+|-
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3599999996333233322 2222 2234555678888999999999873
No 227
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=71.98 E-value=12 Score=37.60 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcc-cCeEE
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQL-FQRVH 90 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkql-F~kV~ 90 (547)
..+.-+..+|+|||.||+=-+.......+...+... |.-+.
T Consensus 194 ~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 194 ELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence 335567789999999998655555677788888876 65544
No 228
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=71.42 E-value=1.9 Score=42.73 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHhcC-CcCCCCeeeecCCCCCchHHHHHH
Q psy3133 192 SRAAFKLIQLNRKFE-FLQKSKVCVDLCAAPGGWMQVAKQ 230 (547)
Q Consensus 192 sRaa~KL~ei~~kf~-l~~~g~~VlDLGaaPGgWsqva~~ 230 (547)
||+++||.+..+.++ +..|+..+||.|+++|++++.-..
T Consensus 146 sr~~~~l~~~l~~~~~~~~p~~l~~D~~~~tg~f~~~p~~ 185 (203)
T PRK05327 146 SKKLPRIKEALELAERRGVPDWLEVDAEKLEGTFKRLPER 185 (203)
T ss_pred CcccHHHHHHHHhhcccCCCCeEEEecCcCEEEEEeccCH
Confidence 899999999999998 578999999999999998875543
No 229
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=71.07 E-value=5.8 Score=39.78 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=27.3
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEE
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTK 68 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~K 68 (547)
...||+|++....+... |. ..++.-+..+|+|||.|++-
T Consensus 144 ~~~fD~Vi~~~v~~~~~----d~-------~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 144 DNSVDVIISNCVINLSP----DK-------ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred CCceeEEEEcCcccCCC----CH-------HHHHHHHHHHcCCCcEEEEE
Confidence 34789999887554332 21 24567788999999999873
No 230
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=71.03 E-value=4.6 Score=34.59 Aligned_cols=50 Identities=26% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 15 RELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 15 ~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
..+...++|+|++|- ..++... +......+....+..|..+|++||.|++
T Consensus 64 ~~~~~~~~D~Iv~np--P~~~~~~-~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 64 EPLPDGKFDLIVTNP--PYGPRSG-DKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp HTCTTT-EEEEEE----STTSBTT-----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhccCceeEEEEECC--CCccccc-cchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 345568999999986 2222211 1111112445667788999999999886
No 231
>KOG1500|consensus
Probab=70.51 E-value=3.9 Score=44.35 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=33.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
-..|..|||+|||.|=-|..|++. |+.+|.+|.-..|.
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MA 212 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMA 212 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHH
Confidence 347899999999999999999987 88889999877775
No 232
>PLN02366 spermidine synthase
Probab=70.41 E-value=5.8 Score=41.78 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=33.0
Q ss_pred HHHHHhcCC--cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 199 IQLNRKFEF--LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 199 ~ei~~kf~l--~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.|+.-...+ .....+||+||||.|+....+++.-+...|+.||+.+
T Consensus 78 ~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~ 125 (308)
T PLN02366 78 QEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK 125 (308)
T ss_pred HHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH
Confidence 344444333 2456899999999999999888774445678888776
No 233
>KOG1661|consensus
Probab=70.31 E-value=3 Score=42.45 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=33.5
Q ss_pred CCcCCCCeeeecCCCCCchHHHHHHhhcCCeE--Eeecccc
Q psy3133 206 EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSI--IHFDDES 244 (547)
Q Consensus 206 ~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~v--v~vD~~~ 244 (547)
.++.||...||+|+|+|--|-+++..+|+.++ ++|+..+
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~ 118 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP 118 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH
Confidence 46899999999999999999999999988766 6777654
No 234
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=69.34 E-value=5.1 Score=41.52 Aligned_cols=50 Identities=8% Similarity=0.220 Sum_probs=38.5
Q ss_pred ccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 190 y~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
|+-=|+|=+..+. +.||++||+-|.|.|.-|-+++..+|+ +.|+.++..+
T Consensus 79 yPKD~~~I~~~~g-----i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~ 129 (256)
T COG2519 79 YPKDAGYIVARLG-----ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE 129 (256)
T ss_pred cCCCHHHHHHHcC-----CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH
Confidence 4444555433322 689999999999999999999999888 4578888764
No 235
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=66.96 E-value=8.4 Score=39.96 Aligned_cols=33 Identities=3% Similarity=0.091 Sum_probs=26.7
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
.++.+||.+|+|+|+-|..++++... |++|.+.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD 61 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAAR--VTAIEID 61 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeC
Confidence 34999999999999999999998543 6666443
No 236
>KOG1271|consensus
Probab=66.63 E-value=5.4 Score=40.12 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=35.0
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc----ccC----CCcchhHHHhhccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV----LKH----PSTTVEIQECCKDIRV 264 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~----~~~----p~~~~~i~~~~~Di~v 264 (547)
.-.+|||||||-|...--+++.--.+..++||-.+- +.+ ..-.++|++-+.||..
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence 345999999999998888877744445778776531 111 1112346666666665
No 237
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=66.47 E-value=12 Score=36.90 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=36.1
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq 84 (547)
..+|+|+|..+.. |..|. ..+|.-+..+|+|||.|++=.|.......+...+..
T Consensus 102 ~~fD~V~s~~~l~----~~~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 102 ATFDLAWSNLAVQ----WCGNL-------STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred CcEEEEEECchhh----hcCCH-------HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 4678887765432 33332 245666779999999999988877766666555443
No 238
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=65.55 E-value=4.5 Score=40.91 Aligned_cols=36 Identities=14% Similarity=0.010 Sum_probs=28.1
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
.+|.+||+.|||.|-=.-.++++ |- .|+|||+.+..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G~-~V~GvDlS~~A 77 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-GV-KVIGIELSEKA 77 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-CC-cEEEEecCHHH
Confidence 46789999999999766666665 33 39999998653
No 239
>KOG2904|consensus
Probab=65.18 E-value=5.8 Score=41.97 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=31.0
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
+..+||||||.|.-|--++..++...|+|||+.+.+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~A 184 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAA 184 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHH
Confidence 458999999999999999988887778899998653
No 240
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=64.66 E-value=6.6 Score=39.33 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=28.0
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhc-CCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMM-ASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g-~~~vv~vD~~~ 244 (547)
.++.+|||+||+.|.=+-.++..++ ...|+++|..+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~ 103 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK 103 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH
Confidence 5688999999999986666666554 45689999875
No 241
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=64.65 E-value=15 Score=34.98 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=31.5
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHH
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLL 79 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll 79 (547)
..+|+|++.++.. |..|. ...|.-+..+|+|||.|++-.|.......+.
T Consensus 97 ~~fD~vi~~~~l~----~~~~~-------~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~ 145 (240)
T TIGR02072 97 SSFDLIVSNLALQ----WCDDL-------SQALSELARVLKPGGLLAFSTFGPGTLHELR 145 (240)
T ss_pred CceeEEEEhhhhh----hccCH-------HHHHHHHHHHcCCCcEEEEEeCCccCHHHHH
Confidence 4577777765432 21221 2356677889999999999888766544433
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=63.60 E-value=8.7 Score=39.27 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=28.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCe-EEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~-vv~vD~~~ 244 (547)
+++|.+||-||||+|.----++.-+|..+ |.||...|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~ 108 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP 108 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc
Confidence 79999999999999999888999998555 56886653
No 243
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.58 E-value=22 Score=38.73 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=39.9
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEe
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHST 92 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~ 92 (547)
.++|+|+|.= |--.|....+ .++...+.-|..+|+|||.|++=.-+.-.|. ..|+++|..|+..
T Consensus 297 ~~fDlIlsNP-Pfh~~~~~~~-----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~---~~L~~~fg~~~~v 360 (378)
T PRK15001 297 FRFNAVLCNP-PFHQQHALTD-----NVAWEMFHHARRCLKINGELYIVANRHLDYF---HKLKKIFGNCTTI 360 (378)
T ss_pred CCEEEEEECc-CcccCccCCH-----HHHHHHHHHHHHhcccCCEEEEEEecCcCHH---HHHHHHcCCceEE
Confidence 4678888852 2222222222 2344556678899999999888766655555 4455578877664
No 244
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=63.14 E-value=8.8 Score=39.28 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.8
Q ss_pred CcCCCCeeeecCCCCCchHHHHHHhh-------cCCeEEeeccccc
Q psy3133 207 FLQKSKVCVDLCAAPGGWMQVAKQNM-------MASSIIHFDDESV 245 (547)
Q Consensus 207 l~~~g~~VlDLGaaPGgWsqva~~~~-------g~~~vv~vD~~~~ 245 (547)
-..++.+|+|-+||.|++.--+.+.+ ....++|+|+.+.
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~ 88 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPE 88 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HH
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHH
Confidence 34578899999999999988777754 3445789998754
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=62.57 E-value=9.8 Score=42.92 Aligned_cols=55 Identities=5% Similarity=0.051 Sum_probs=36.4
Q ss_pred CCCceeeeccccccccccCChhHhhhhhccccCCccchhHHHHHHHHHhcCCc-CCC--CeeeecCCCCCchHHHHHHh
Q psy3133 156 SDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFL-QKS--KVCVDLCAAPGGWMQVAKQN 231 (547)
Q Consensus 156 ~~~~~l~~~~ss~~fi~~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~-~~g--~~VlDLGaaPGgWsqva~~~ 231 (547)
+|+...|.... ..|..+.+.|. .+|.+-..++ ..| .++||+|||.|+|.-++.++
T Consensus 81 ~gd~~~FPggg-t~F~~Ga~~Yi--------------------d~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 81 EGDKFRFPGGG-TMFPHGADHYI--------------------DQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred cCCEEEeCCCC-ccccCCHHHHH--------------------HHHHHHhhccccCCceEEEEeccceeehhHHHHhhC
Confidence 45555554433 46777766653 2444445553 333 78999999999999998887
No 246
>KOG3010|consensus
Probab=62.42 E-value=6.4 Score=40.81 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=24.4
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..++|+|||+|-=++++++.. ..|||+|+.+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~ 65 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSE 65 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCH
Confidence 389999999996677777663 3489999974
No 247
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=62.32 E-value=4.1 Score=32.78 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.6
Q ss_pred HHHHHHHHhhccCCCEEEE
Q psy3133 49 LGALKLASGILKEGGWFVT 67 (547)
Q Consensus 49 ~~AL~LA~~~Lr~GGtFV~ 67 (547)
..++.-+.++|+|||.||+
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 3556778899999999986
No 248
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=61.94 E-value=22 Score=33.74 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=34.2
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc-ccCeEE
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ-LFQRVH 90 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq-lF~kV~ 90 (547)
++|+|++++.. +. + ...+..+...|+|||.||+=...-.....+...+.+ -|..+.
T Consensus 97 ~~D~v~~~~~~---~~-----~------~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 97 KADAIFIGGSG---GN-----L------TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCEEEECCCc---cC-----H------HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence 57888876532 11 0 123556788999999998844344456666666655 354443
No 249
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=61.86 E-value=20 Score=38.81 Aligned_cols=84 Identities=21% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEecCCCC
Q psy3133 18 KTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQAS 97 (547)
Q Consensus 18 ~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~KP~AS 97 (547)
....+|-|++|. ..|-.-..-.....+|...+|..|.++|++||.+|.=.+ .....+....-|+-+..+.=-.-
T Consensus 261 ~~~~vdaIatDP--PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~v~~~~~~~~H 334 (347)
T COG1041 261 RDNSVDAIATDP--PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFKVLGRFTMRVH 334 (347)
T ss_pred CCCccceEEecC--CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCceEEEEEEEeec
Confidence 334589999996 333222111112457999999999999999999988777 45566777777887777766666
Q ss_pred CCCCceEEEE
Q psy3133 98 RKESAEIFVV 107 (547)
Q Consensus 98 R~~SsEiYvV 107 (547)
++=++.||++
T Consensus 335 ~sLtR~i~v~ 344 (347)
T COG1041 335 GSLTRVIYVV 344 (347)
T ss_pred CceEEEEEEE
Confidence 7777777765
No 250
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=61.48 E-value=18 Score=35.09 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcCHHHHH
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKDYTSLL 79 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll 79 (547)
..|.-+..+|+|||.||+=-+..+....+.
T Consensus 132 ~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~ 161 (231)
T TIGR02752 132 QVLREMYRVVKPGGKVVCLETSQPTIPGFK 161 (231)
T ss_pred HHHHHHHHHcCcCeEEEEEECCCCCChHHH
Confidence 346667899999999987544444443333
No 251
>PRK01581 speE spermidine synthase; Validated
Probab=61.08 E-value=6.3 Score=42.89 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=28.3
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
...+||+||||.|+....+++.-+...|++||+.+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp 184 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG 184 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH
Confidence 34699999999999888888765556788999876
No 252
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=60.62 E-value=15 Score=38.99 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 200 QLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 200 ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
|+.+-+. +.+|..+||.=+|-||=|..+++.++...|+|+|..|..
T Consensus 11 Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~A 56 (305)
T TIGR00006 11 EVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQA 56 (305)
T ss_pred HHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHH
Confidence 3444443 368899999999999999999999876779999988754
No 253
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=59.95 E-value=9.7 Score=40.56 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+|.+..-.+-=..++ .||||-||.|.+|..++.... .|+||+..+
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~ 228 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVE 228 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-H
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCH
Confidence 444443332223344 899999999999999998754 599998864
No 254
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=59.89 E-value=8.8 Score=38.06 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=32.5
Q ss_pred cCCcC----CCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 205 FEFLQ----KSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 205 f~l~~----~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
|+++. .|.+||||-||.|+=.--|+.| |+..++.||...
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~ 76 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDR 76 (187)
T ss_pred HHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCH
Confidence 55554 4899999999999999999999 777788888764
No 255
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=59.61 E-value=36 Score=33.22 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=22.6
Q ss_pred CCCCCChHHHHHHHHHhCCCcccEEecCCCC
Q psy3133 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSP 31 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~~kvDVVLSDgAP 31 (547)
++|+++.+....+...+. .++|+|+|-.+.
T Consensus 29 ~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~ 58 (241)
T PRK12428 29 QADLGDPASIDAAVAALP-GRIDALFNIAGV 58 (241)
T ss_pred cccCCCHHHHHHHHHHhc-CCCeEEEECCCC
Confidence 479999887776666554 479999987754
No 256
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=58.38 E-value=9.3 Score=42.33 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=27.1
Q ss_pred CCCeeeecCCCCCchHHHHHHhh----cCCeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNM----MASSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~----g~~~vv~vD~~~~ 245 (547)
.+.+|+|+|||+|-=++.+++.. ++..|+||..+++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 57899999999999988877653 3557889988765
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=58.01 E-value=8.8 Score=36.42 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=38.1
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcC-----HHHHHHHHHcc
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKD-----YTSLLWIFKQL 85 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d-----~~~Ll~~lkql 85 (547)
++|+|+--..-=-||++.. ..+.+=++.||.-|+.+|++||-+++=++.|.+ ...+...+..+
T Consensus 46 ~v~~~iFNLGYLPggDk~i--~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 46 PVDAAIFNLGYLPGGDKSI--TTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp -EEEEEEEESB-CTS-TTS--B--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred CcCEEEEECCcCCCCCCCC--CcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 5666655443222454443 334556779999999999999999999999853 45555555543
No 258
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=57.27 E-value=12 Score=32.52 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccC
Q psy3133 7 DKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRS 72 (547)
Q Consensus 7 ~~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg 72 (547)
....++|.....+.++|+|+ +++|. ..++..+..+|++||++|+=-+.+
T Consensus 44 ~~~~~~i~~~~~~~~~d~vi-----d~~g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 44 DDFVEQIRELTGGRGVDVVI-----DCVGS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSHHHHHHHHTTTSSEEEEE-----ESSSS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cccccccccccccccceEEE-----EecCc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 34666777777666788887 34442 125667889999999999876665
No 259
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.98 E-value=10 Score=39.43 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+|.|+..+-+.= +=.++||||||+|=.-.-+..+. ..+.+||+..
T Consensus 113 ~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~ 157 (287)
T COG4976 113 LLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISE 157 (287)
T ss_pred HHHHHHHhccCC-ccceeeecccCcCcccHhHHHHH--hhccCCchhH
Confidence 555555544431 13789999999996544443332 1256777763
No 260
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=56.39 E-value=21 Score=38.15 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=43.7
Q ss_pred cccEEecCCCCCCCCCh-----------hhhHHHHHHHHHHHHHHHHhhccCCCEEEE---EeccCcCHHHHHHHHHcc
Q psy3133 21 KVDVVLHDGSPNVGMNW-----------VYDAYHQCCLTLGALKLASGILKEGGWFVT---KVFRSKDYTSLLWIFKQL 85 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~-----------~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~---KVFrg~d~~~Ll~~lkql 85 (547)
+||.||.|.-...+|.+ ..|...-..|-..-|.-|..+|+|||.+|- =++.-+....+.+.|.+.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 59999999854444543 123333445556668888999999999874 444445666677888775
No 261
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=56.08 E-value=27 Score=38.34 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhC-CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEe-ccCcCHHHHHHHHHc
Q psy3133 7 DKCRIAITRELK-TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKV-FRSKDYTSLLWIFKQ 84 (547)
Q Consensus 7 ~~~~~~I~~~l~-~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KV-Frg~d~~~Ll~~lkq 84 (547)
..|.+.|...-. +.++|||+-|= |..+...... +.-..=-..-+..|.++|+|||++|+=. .+......|+..+..
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDP-PsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDP-PSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECC-cccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 345555555443 45999999995 3333332222 2222222233567889999999988633 233344444444443
No 262
>PRK14967 putative methyltransferase; Provisional
Probab=55.93 E-value=55 Score=32.09 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCcccEEecCCCCCCCC------------ChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc
Q psy3133 19 TWKVDVVLHDGSPNVGM------------NWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG------------~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq 84 (547)
..++|+|+++. |-+.. .|.... ....+....+.-|..+|++||.|++=.-.-.....++..++.
T Consensus 99 ~~~fD~Vi~np-Py~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 99 FRPFDVVVSNP-PYVPAPPDAPPSRGPARAWDAGP-DGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSE 174 (223)
T ss_pred CCCeeEEEECC-CCCCCCcccccccChhHhhhCCC-cHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHH
Confidence 45799999985 22211 011111 112344566777899999999988522111245556655543
No 263
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=55.12 E-value=22 Score=38.96 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=38.1
Q ss_pred CcccEEecCCCCCC-CCCh--------hhh---HHHHHHHHHHHHHHHHhhccCCCEEEEEeccCc---CHHHHHHHHHc
Q psy3133 20 WKVDVVLHDGSPNV-GMNW--------VYD---AYHQCCLTLGALKLASGILKEGGWFVTKVFRSK---DYTSLLWIFKQ 84 (547)
Q Consensus 20 ~kvDVVLSDgAPnv-sG~~--------~~D---~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~---d~~~Ll~~lkq 84 (547)
..||+|+.|. |.. +|.+ ..+ -.....+-...|.-|..+|+|||.+|.=...-. ....+.+.|++
T Consensus 317 ~~fD~Vl~D~-Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 317 EQPDAILLDA-PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCEEEEcC-CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 4699999994 322 2322 111 111223445667888899999999998665432 23334555655
Q ss_pred c
Q psy3133 85 L 85 (547)
Q Consensus 85 l 85 (547)
+
T Consensus 396 ~ 396 (445)
T PRK14904 396 H 396 (445)
T ss_pred C
Confidence 3
No 264
>KOG1540|consensus
Probab=54.58 E-value=17 Score=38.19 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=36.2
Q ss_pred HHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeE
Q psy3133 49 LGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRV 89 (547)
Q Consensus 49 ~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV 89 (547)
..+|.-|-.+|+|||-|.|=-|.-.+-..|.|...+.|-.|
T Consensus 194 ~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 194 QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 46788899999999999999998777678899999998888
No 265
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=52.13 E-value=20 Score=35.91 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=23.9
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
.++|+|..|+.. +.|. ..+..+..+|+|||.+|+
T Consensus 143 ~~fD~VfiDa~k--------~~y~------~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADK--------PNYV------HFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCH--------HHHH------HHHHHHHHhcCCCeEEEE
Confidence 579999999853 2222 124566789999999886
No 266
>KOG4022|consensus
Probab=52.12 E-value=33 Score=34.22 Aligned_cols=60 Identities=27% Similarity=0.168 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCcccEEecCCCCCCCCChh-hhHHHHHHHH--------HHHHHHHHhhccCCCEEEE
Q psy3133 8 KCRIAITRELKTWKVDVVLHDGSPNVGMNWV-YDAYHQCCLT--------LGALKLASGILKEGGWFVT 67 (547)
Q Consensus 8 ~~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~-~D~~~q~~L~--------~~AL~LA~~~Lr~GGtFV~ 67 (547)
.+..++-+.|.+.++|-|+|=..-=.+|+-. .|-+...+|. -.+..+|+.+|++||-+-+
T Consensus 59 ~v~~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~L 127 (236)
T KOG4022|consen 59 SVLEQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQL 127 (236)
T ss_pred HHHHHHHHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeee
Confidence 4556667778899999999977666666644 4443333332 2345899999999998654
No 267
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=52.05 E-value=19 Score=36.03 Aligned_cols=37 Identities=11% Similarity=-0.022 Sum_probs=29.7
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
..++.+||..|||.|.=...++++ | -.|+|||+.+..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~A 71 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTA 71 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHH
Confidence 567889999999999888888887 3 359999998653
No 268
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=51.89 E-value=38 Score=34.90 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3133 312 EEKELMKATKEIEELKDEERRELKRKKKK 340 (547)
Q Consensus 312 ~~~e~~~~~~e~~~~~~~~~~~~kr~kkk 340 (547)
++++++.|.+||+.++.+...+.+|+...
T Consensus 144 deDd~~~Ll~ELekIKkER~ee~~~~e~~ 172 (244)
T PF04889_consen 144 DEDDTAALLRELEKIKKERAEEKARKEEE 172 (244)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557789999999999888877765433
No 269
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=51.72 E-value=29 Score=38.01 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=37.7
Q ss_pred CcccEEecCCCCCCCCChhh-----------hHHHHHHHHHHHHHHHHhhccCCCEEEEEeccC---cCHHHHHHHHHc
Q psy3133 20 WKVDVVLHDGSPNVGMNWVY-----------DAYHQCCLTLGALKLASGILKEGGWFVTKVFRS---KDYTSLLWIFKQ 84 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~-----------D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg---~d~~~Ll~~lkq 84 (547)
..||.||+|.-..-.|.+.. +...-..+-...|.-|..+|+|||.+|.=...- +....+.+.|..
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 46999999974333343211 111122344566778889999999987655432 233344455544
No 270
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=50.49 E-value=31 Score=33.26 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=20.1
Q ss_pred HHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc
Q psy3133 52 LKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 52 L~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq 84 (547)
+..+..+|+|||.||+= +.......+.....+
T Consensus 125 ~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 125 LELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred HHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 45567889999999964 333344455544444
No 271
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=50.29 E-value=20 Score=35.83 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=16.1
Q ss_pred HHHHHHHhhccCCCEEEEEec
Q psy3133 50 GALKLASGILKEGGWFVTKVF 70 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVF 70 (547)
.+|.-+..+|+|||.|++=++
T Consensus 130 ~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHHcCCCeEEEEEEE
Confidence 456778889999999986433
No 272
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=50.13 E-value=16 Score=36.97 Aligned_cols=32 Identities=3% Similarity=0.134 Sum_probs=27.3
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
-.+|+||||-|.|.--++++-+..-.|||++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~ 81 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIR 81 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEe
Confidence 48999999999999988888666667888876
No 273
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=50.01 E-value=14 Score=37.52 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=28.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEE
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSII 238 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv 238 (547)
++||++|+||=-|-|-||.+++.-+|+.++|
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~V 76 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKV 76 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeE
Confidence 5899999999999999999999999988754
No 274
>KOG2920|consensus
Probab=49.47 E-value=14 Score=38.99 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=26.3
Q ss_pred HHHhc--CCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 201 LNRKF--EFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 201 i~~kf--~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
+-+.+ .+...|.+||||||++|==.-.+... |...++..|.+
T Consensus 105 l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~n 148 (282)
T KOG2920|consen 105 LKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFN 148 (282)
T ss_pred HHHHhhhheEecCceeEecCCcccccchhhhhh-ccceeeeEecc
Confidence 44465 67789999999999998544333333 22334444444
No 275
>KOG1541|consensus
Probab=49.11 E-value=9.6 Score=39.35 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=23.8
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.-+||+|||+|==.+|+.+. | -..|+||+.|
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSp 82 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISP 82 (270)
T ss_pred CcEEEEeccCCCcchheeccC-C-ceEEeecCCH
Confidence 688999999999777777664 2 2357788764
No 276
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=49.01 E-value=37 Score=37.02 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=34.3
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccCc-CHHHHHHHHHc
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSK-DYTSLLWIFKQ 84 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~-d~~~Ll~~lkq 84 (547)
+.+||+|++|- |....... ....-..--...+.+|..+|++||.||+=...+. ....|...+..
T Consensus 291 ~~~fDlVilDP-P~f~~~k~-~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 291 GEKFDVIVMDP-PKFVENKS-QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred CCCCCEEEECC-CCCCCChH-HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 45899999996 33222211 1111111112233578899999999995332222 33556655544
No 277
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=48.99 E-value=29 Score=38.86 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=36.8
Q ss_pred cccEEecCCCCCCCCChhhhH-----------HHHHHHHHHHHHHHHhhccCCCEEEEEecc---CcCHHHHHHHHHcc
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDA-----------YHQCCLTLGALKLASGILKEGGWFVTKVFR---SKDYTSLLWIFKQL 85 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~-----------~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFr---g~d~~~Ll~~lkql 85 (547)
.||.||.|.-..-.|.+-.+. ..-..|-...|.-|..+|+|||.+|==.-. -++...+.+.|+++
T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 589999998333233332221 122345556677888999999987422211 12233445666664
No 278
>KOG0024|consensus
Probab=48.68 E-value=15 Score=39.61 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=32.1
Q ss_pred cCCCCeeeecCCCCCc-hHHHHHHhhcCCeEEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGG-WMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGg-Wsqva~~~~g~~~vv~vD~~~~ 245 (547)
+++|.+||=|||||=| -+-.+++-+|++.||.+|+.+-
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~ 205 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN 205 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH
Confidence 5789999999999966 5677788889999999998753
No 279
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=48.50 E-value=32 Score=36.06 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEecc
Q psy3133 46 CLTLGALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 46 ~L~~~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
.+....+.-|..+|+|||.|++=+-.
T Consensus 240 ~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 240 DLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 45556678888999999999986554
No 280
>PLN02476 O-methyltransferase
Probab=48.17 E-value=20 Score=37.45 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
.+..+||++|++.|.-+-.++..++.. .|+++|..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~ 153 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS 153 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence 467899999999999999999877643 478999875
No 281
>PHA01634 hypothetical protein
Probab=47.74 E-value=26 Score=33.60 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHhcCCc-CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 202 NRKFEFL-QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 202 ~~kf~l~-~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
-..|+.+ -.|.+|+|+||.-|.=+-+-+-+ |++.|+++...+
T Consensus 19 ~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~ 61 (156)
T PHA01634 19 PHAYGMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEE 61 (156)
T ss_pred HHHhhheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCH
Confidence 3445554 57999999999999977766655 888899887543
No 282
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=47.38 E-value=58 Score=33.35 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHH--cccCeEEEecCCCCCCCCceEEEEEe
Q psy3133 47 LTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFK--QLFQRVHSTKPQASRKESAEIFVVCQ 109 (547)
Q Consensus 47 L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lk--qlF~kV~~~KP~ASR~~SsEiYvVC~ 109 (547)
+....+..|..+|+|||.|++=+-.. .-..+...+. .-|..|.++|=-+ ..+.+++|+
T Consensus 222 ~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~~~~~~~D~~----g~~R~~~~~ 281 (284)
T TIGR00536 222 ILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWYDVENGRDLN----GKERVVLGF 281 (284)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCceeEEecCCC----CCceEEEEE
Confidence 45556778889999999998877533 2234444454 2478888766433 335666653
No 283
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=47.08 E-value=30 Score=35.65 Aligned_cols=37 Identities=27% Similarity=0.184 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc
Q psy3133 46 CLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 46 ~L~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq 84 (547)
.+....+..|..+|+|||.|++=+-.+. ..+...+..
T Consensus 228 ~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~ 264 (284)
T TIGR03533 228 DLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPD 264 (284)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHh
Confidence 3445667888999999999998765322 455555554
No 284
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=46.48 E-value=27 Score=34.02 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=25.6
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccC
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRS 72 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg 72 (547)
.++|+|+|.+..+ ....+..+..+|+|||.||+=.+..
T Consensus 111 ~~fDlV~~~~~~~---------------~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 111 EKFDVVTSRAVAS---------------LSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred CCccEEEEccccC---------------HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 4788888864111 1234567788999999999655443
No 285
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=46.02 E-value=30 Score=36.83 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=29.1
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
..++..+||.=.|-||-|+-+++.++...++|+|.-|..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a 56 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEA 56 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHH
Confidence 678889999999999999999999988889999987643
No 286
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=45.39 E-value=1.4e+02 Score=33.24 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhccCCCEEEEEeccCc-CHHHHHHHHHcc-cCeEEEecCCCCCCCCceEEEEEeec
Q psy3133 48 TLGALKLASGILKEGGWFVTKVFRSK-DYTSLLWIFKQL-FQRVHSTKPQASRKESAEIFVVCQHY 111 (547)
Q Consensus 48 ~~~AL~LA~~~Lr~GGtFV~KVFrg~-d~~~Ll~~lkql-F~kV~~~KP~ASR~~SsEiYvVC~gf 111 (547)
....+.-|..+|+|||.+++=+ |. .-..+...+... |..|.+.|=-+- .+.+++++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi--G~~Q~e~V~~ll~~~Gf~~v~v~kDl~G----~dR~v~~~~~ 419 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH--GFDQGAAVRGVLAENGFSGVETLPDLAG----LDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE--CccHHHHHHHHHHHCCCcEEEEEEcCCC----CcEEEEEEEh
Confidence 3355667788999999987533 33 345566666554 888888765443 4788887643
No 287
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=44.31 E-value=41 Score=39.25 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCcccEEecCCCCCCCCChh-hhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 19 TWKVDVVLHDGSPNVGMNWV-YDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~-~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
+.++|+|++|- |..+.... .+...-..--...+..|..+|+|||.|++
T Consensus 606 ~~~fDlIilDP-P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~ 654 (702)
T PRK11783 606 REQFDLIFIDP-PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF 654 (702)
T ss_pred CCCcCEEEECC-CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45899999993 33332111 11111122222345667889999999865
No 288
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=43.95 E-value=12 Score=37.80 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc-------------------cCCCc-chhHHH-hhccccccCH
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL-------------------KHPST-TVEIQE-CCKDIRVLGR 267 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~-------------------~~p~~-~~~i~~-~~~Di~vl~~ 267 (547)
-+|.+|||+|+|+|==+ +++-+.|+..|++.|+.|.. .+... ...++- +.+|+ ++.+
T Consensus 78 VrgkrVLd~gagsgLva-IAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDl-fy~~ 155 (218)
T COG3897 78 VRGKRVLDLGAGSGLVA-IAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDL-FYNH 155 (218)
T ss_pred cccceeeecccccChHH-HHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeece-ecCc
Confidence 45899999999999644 34444466666665555421 01110 111111 22333 4677
Q ss_pred HHHHhhhhHHHHHhH
Q psy3133 268 KDVRNLLKWWKVLHD 282 (547)
Q Consensus 268 ~~~r~LlkWr~~l~d 282 (547)
.....|++|-..+..
T Consensus 156 ~~a~~l~~~~~~l~~ 170 (218)
T COG3897 156 TEADRLIPWKDRLAE 170 (218)
T ss_pred hHHHHHHHHHHHHHh
Confidence 788888888877754
No 289
>KOG2187|consensus
Probab=43.70 E-value=22 Score=40.32 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
+|--+....--+..+..+||++||+|..+--++.++. +|++|.+.|-
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~ 416 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPD 416 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChh
Confidence 4444444455567789999999999999988888644 5899987764
No 290
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=43.65 E-value=30 Score=34.25 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.1
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEecc
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
.++|+|+|..+-. |..|. ..++.-+..+|+|||.|++=+..
T Consensus 92 ~~fD~v~~~~~l~----~~~d~-------~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 92 QALDLIFANASLQ----WLPDH-------LELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCccEEEEccChh----hCCCH-------HHHHHHHHHhcCCCcEEEEECCC
Confidence 4678888776432 33332 23566677899999999986533
No 291
>PRK08317 hypothetical protein; Provisional
Probab=43.37 E-value=29 Score=32.89 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCCEEEE
Q psy3133 51 ALKLASGILKEGGWFVT 67 (547)
Q Consensus 51 AL~LA~~~Lr~GGtFV~ 67 (547)
.+.-+..+|+|||.|++
T Consensus 106 ~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 106 ALAEIARVLRPGGRVVV 122 (241)
T ss_pred HHHHHHHHhcCCcEEEE
Confidence 45667789999999987
No 292
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=41.99 E-value=39 Score=31.97 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=19.6
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcC
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKD 74 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d 74 (547)
.+|.-+...|+|||.|++--+....
T Consensus 124 ~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 124 KALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred HHHHHHHHHcCCCcEEEEEEecCCC
Confidence 4577788999999999987665543
No 293
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=41.76 E-value=26 Score=34.19 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=11.5
Q ss_pred HHhhccCCCEEEEE
Q psy3133 55 ASGILKEGGWFVTK 68 (547)
Q Consensus 55 A~~~Lr~GGtFV~K 68 (547)
....|+|||.||+=
T Consensus 163 ~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 163 LIDQLKEGGILVMP 176 (215)
T ss_pred HHHhcCcCcEEEEE
Confidence 45689999999983
No 294
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=40.32 E-value=30 Score=33.49 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.6
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|||+.||-||=+-..+.. ...|+|||+.|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~ 32 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPE 32 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HH
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHH
Confidence 37999999999987777776 345999999875
No 295
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=40.09 E-value=27 Score=37.87 Aligned_cols=35 Identities=11% Similarity=-0.055 Sum_probs=30.3
Q ss_pred CCeeeecCCCCCchHHHHHHhh-cCCeEEeeccccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNM-MASSIIHFDDESV 245 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~-g~~~vv~vD~~~~ 245 (547)
+-+|||+.||+|..+--++.+. |...|+++|+.|-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~ 80 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPK 80 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHH
Confidence 4589999999999999998886 6678999999874
No 296
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=40.01 E-value=37 Score=33.84 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=27.2
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEeccC
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRS 72 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg 72 (547)
..||+|+|..+-. |..|. ..++.-+..+|+|||.|++-++.+
T Consensus 88 ~~fD~v~~~~~l~----~~~d~-------~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 88 PDTDVVVSNAALQ----WVPEH-------ADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CCceEEEEehhhh----hCCCH-------HHHHHHHHHhCCCCcEEEEEcCCC
Confidence 4677777755322 22332 234556778999999999876543
No 297
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=39.90 E-value=34 Score=34.93 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhccCCCEEEE
Q psy3133 48 TLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 48 ~~~AL~LA~~~Lr~GGtFV~ 67 (547)
...++.-...+|+|||.||+
T Consensus 221 ~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 221 QRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHHHhCCCeEEEE
Confidence 34566777789999999987
No 298
>KOG1596|consensus
Probab=39.52 E-value=22 Score=37.24 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=26.9
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEecc
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
-+|+|.+|-++... .+. ...-|..||++||.||+=+--
T Consensus 226 mVDvIFaDvaqpdq-------~Ri------vaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 226 MVDVIFADVAQPDQ-------ARI------VALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eEEEEeccCCCchh-------hhh------hhhhhhhhhccCCeEEEEEec
Confidence 68999999987532 122 122467899999999986643
No 299
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=39.15 E-value=27 Score=38.62 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 197 KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
||.+.-..+--..++.+||||=||-|+|+..++.+. ..|+||++.+-
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~ 326 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPE 326 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHH
Confidence 555555555555788999999999999999999764 35899998753
No 300
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=38.62 E-value=21 Score=35.90 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCeeeecCCCCCc---hHHHHHHhh-cCCeEEeeccc--c-----cccCCCcchhHHHhhccccc
Q psy3133 211 SKVCVDLCAAPGG---WMQVAKQNM-MASSIIHFDDE--S-----VLKHPSTTVEIQECCKDIRV 264 (547)
Q Consensus 211 g~~VlDLGaaPGg---Wsqva~~~~-g~~~vv~vD~~--~-----~~~~p~~~~~i~~~~~Di~v 264 (547)
-.++|.+|.+-|| |.--+++.+ +...|++||+. + +..||. ...|.++.+|-..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceEEEECCCCC
Confidence 3689999999999 333344455 44568999983 1 223443 2566777666654
No 301
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=38.31 E-value=1.3e+02 Score=32.41 Aligned_cols=37 Identities=27% Similarity=0.134 Sum_probs=23.9
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
..+|+|++-++-+... |. ..+|.-+..+|+|||.|++
T Consensus 177 ~sFDvVIs~~~L~~~~----d~-------~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 177 DYADRYVSAGSIEYWP----DP-------QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CceeEEEEcChhhhCC----CH-------HHHHHHHHHhcCCCcEEEE
Confidence 4577777754433211 11 1357778899999999876
No 302
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=38.11 E-value=29 Score=35.28 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=27.6
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.++-|||||+|--|.+|+.. +.+|++|...|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk 65 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPK 65 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcH
Confidence 78899999999999999987 566999987763
No 303
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=37.87 E-value=26 Score=39.05 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=26.9
Q ss_pred CCCeeeecCCCCCchHHHHHHhhcC--------CeEEeeccccc
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQNMMA--------SSIIHFDDESV 245 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~~g~--------~~vv~vD~~~~ 245 (547)
.+.+|||.|||.|++..-++.++.. ..++|+|+.+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~ 74 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT 74 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH
Confidence 5679999999999999888877632 23567777654
No 304
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.39 E-value=1.2e+02 Score=24.55 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhcCCccCCCC
Q psy3133 318 KATKEIEELKDEERRELKRKKKK-VSKERTKLQEKMNLKMLLKGDL 362 (547)
Q Consensus 318 ~~~~e~~~~~~~~~~~~kr~kkk-~~~~~~k~~~r~~l~m~~~~d~ 362 (547)
++++++++++.+...-...-++- .....-....|-.+||.-|++.
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~ 73 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEI 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCE
Confidence 34455555544443333222222 3445556666777999988765
No 305
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=37.39 E-value=17 Score=33.03 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=30.2
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEecc
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
.++|+|++.++. .+..|. ...+.-+..+|++||.|++=.+.
T Consensus 72 ~~~D~I~~~~~l----~~~~~~-------~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVL----HHFPDP-------EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTG----GGTSHH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCch----hhccCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 579999999866 222332 24466788999999999987777
No 306
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=36.71 E-value=48 Score=34.73 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.7
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+||=||-|.|||++.++.......++.||+.+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~ 110 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDP 110 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCH
Confidence 599999999999999999998777788888875
No 307
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=35.93 E-value=1.5e+02 Score=30.87 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCcccEEecCCCCCCCCCh-hhh-HH----HHHHH-HHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcc-c--Ce
Q psy3133 19 TWKVDVVLHDGSPNVGMNW-VYD-AY----HQCCL-TLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQL-F--QR 88 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~-~~D-~~----~q~~L-~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkql-F--~k 88 (547)
...||+|+|-==-+-.|.. ..+ +. .++.+ -..-+..|..+|++||.|.+ |.+-.....++..++++ | .+
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHHHhcCCCceE
Confidence 3468999997532222322 111 11 12344 33445889999999998654 44555556666666662 2 34
Q ss_pred EEEecCCCCCCCCceEEEEEeeccC
Q psy3133 89 VHSTKPQASRKESAEIFVVCQHYIA 113 (547)
Q Consensus 89 V~~~KP~ASR~~SsEiYvVC~gfk~ 113 (547)
+..+-|...++. .-++-.+-++
T Consensus 192 i~~V~p~~~k~A---~~vLv~~~k~ 213 (248)
T COG4123 192 IQFVYPKIGKAA---NRVLVEAIKG 213 (248)
T ss_pred EEEecCCCCCcc---eEEEEEEecC
Confidence 444445444433 3344444433
No 308
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=35.43 E-value=34 Score=29.19 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 19 TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 19 ~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
..++|+|.-||.+. .+-+...+..+...|+|||.+|+
T Consensus 67 ~~~~dli~iDg~H~------------~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 67 DGPIDLIFIDGDHS------------YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp H--EEEEEEES---------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEEEECCCCC------------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 45899999998433 13555678889999999998775
No 309
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=35.43 E-value=46 Score=35.00 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 9 CRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 9 ~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
+...+...-.+.++|+|+.|=-.-.-|.+... ..-..| +..|..+|+|||.+++
T Consensus 183 vf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~-~~y~~L----~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 183 VFKFLKRLKKGGRFDLIILDPPSFAKSKFDLE-RDYKKL----LRRAMKLLKPGGLLLT 236 (286)
T ss_dssp HHHHHHHHHHTT-EEEEEE--SSEESSTCEHH-HHHHHH----HHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCHHHHH-HHHHHH----HHHHHHhcCCCCEEEE
Confidence 44444433235699999999744334444331 111223 4567799999999764
No 310
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=35.03 E-value=45 Score=32.45 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHhhccCCCEEEEEecc
Q psy3133 50 GALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
..|..+..+|+|||.||+-.+.
T Consensus 132 ~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 132 SFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHHHHHcCCCcEEEEEecC
Confidence 3467788899999999876553
No 311
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=34.80 E-value=90 Score=29.17 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHhhccCCCEEEEEeccCc
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSK 73 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~ 73 (547)
.+|.-+..+|+|||.|++=-|.-+
T Consensus 62 ~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 62 RAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHHHHHHHHcCcCeEEEEEECCCC
Confidence 556777889999999998766643
No 312
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=34.56 E-value=33 Score=34.55 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=25.9
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcccCeEEEecCCCCC
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASR 98 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkqlF~kV~~~KP~ASR 98 (547)
.+|.=+..+|+|||.|++==|..+.-..+...+..+|..| -|...+
T Consensus 134 ~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i---lP~~g~ 179 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI---LPLIGR 179 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------
T ss_pred HHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc---cccccc
Confidence 4677788999999999998887776555555555555544 365544
No 313
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=33.78 E-value=49 Score=33.61 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=16.7
Q ss_pred HHHHHHHhhccCCCEEEEEec
Q psy3133 50 GALKLASGILKEGGWFVTKVF 70 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVF 70 (547)
.+|.-+..+|+|||.||+=-+
T Consensus 137 ~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 137 KLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 556777899999999997543
No 314
>KOG2915|consensus
Probab=33.48 E-value=51 Score=35.12 Aligned_cols=37 Identities=8% Similarity=0.234 Sum_probs=32.4
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCC-eEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMAS-SIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~-~vv~vD~~~ 244 (547)
++||.+||.=|.|.||.|-.++..+++. +++.+|...
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~ 140 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE 140 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH
Confidence 5899999999999999999999999875 467888763
No 315
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=33.46 E-value=45 Score=34.14 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=29.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
+++|..||=||||.|.=---++.-+|.+.+.||...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs 109 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFS 109 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEec
Confidence 699999999999999877777777774456787655
No 316
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=33.35 E-value=36 Score=36.74 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=32.9
Q ss_pred CcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccccc
Q psy3133 207 FLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESVL 246 (547)
Q Consensus 207 l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~~ 246 (547)
+..+|.+|||+=||=|.||-.++....+. |+|+|++|..
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A 223 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDA 223 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHH
Confidence 34679999999999999999999884444 9999999853
No 317
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=33.31 E-value=38 Score=34.74 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.8
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+|+||.||.||.+.-+.+ .|...++++|+.+-
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~ 33 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKS 33 (275)
T ss_pred CcEEEEccCcchHHHHHHH-cCCEEEEEEeCCHH
Confidence 3699999999999876654 46666788998764
No 318
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=32.67 E-value=58 Score=30.64 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+|..|||-=||.|+ |-+|+.++|- .-|++|+.+
T Consensus 190 ~~gdiVlDpF~GSGT-T~~aa~~l~R-~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGT-TAVAAEELGR-RYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTH-HHHHHHHTT--EEEEEESSH
T ss_pred ccceeeehhhhccCh-HHHHHHHcCC-eEEEEeCCH
Confidence 679999999999998 6666666553 368888875
No 319
>PRK07402 precorrin-6B methylase; Provisional
Probab=32.54 E-value=57 Score=31.18 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcc-cCeEEEecCCCC
Q psy3133 49 LGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQL-FQRVHSTKPQAS 97 (547)
Q Consensus 49 ~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkql-F~kV~~~KP~AS 97 (547)
...+..+..+|+|||.||+-...-.....+...+..+ +..+++.....+
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVN 171 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhh
Confidence 4556777888999999999876543334444555443 444444444333
No 320
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=32.21 E-value=1.3e+02 Score=30.39 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHc
Q psy3133 48 TLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQ 84 (547)
Q Consensus 48 ~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkq 84 (547)
....+..|..+|++||.|++=+- ......++..|..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~ 230 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFAR 230 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHH
Confidence 44566778899999999996543 3345567776654
No 321
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=31.66 E-value=1.5e+02 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Q psy3133 316 LMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLK 355 (547)
Q Consensus 316 ~~~~~~e~~~~~~~~~~~~kr~kkk~~~~~~k~~~r~~l~ 355 (547)
++++++.+.+++++..++.-|+-.|-.++-.++..|+...
T Consensus 13 d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~H 52 (109)
T PHA02571 13 DEEVEELLSELQARNEAEAEKKAAKILKKNRREIKRLKKH 52 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4446666666666666665555555556666666666654
No 322
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=31.66 E-value=47 Score=32.60 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=10.8
Q ss_pred HhhccCCCEEEEE
Q psy3133 56 SGILKEGGWFVTK 68 (547)
Q Consensus 56 ~~~Lr~GGtFV~K 68 (547)
...|+|||.||+=
T Consensus 163 ~~~LkpgG~lvi~ 175 (212)
T PRK13942 163 IEQLKDGGIMVIP 175 (212)
T ss_pred HHhhCCCcEEEEE
Confidence 4579999999983
No 323
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=31.52 E-value=57 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=25.8
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCe---------EEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASS---------IIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~---------vv~vD~~~ 244 (547)
.++|..|||--||.|+..--++....... ++|+|+.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~ 71 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP 71 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH
Confidence 46899999999999999888877654433 66887764
No 324
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=31.43 E-value=1.1e+02 Score=36.35 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.0
Q ss_pred ccCCccchhHHHHHHHHHhcCCcCCC
Q psy3133 186 VGKGYRSRAAFKLIQLNRKFEFLQKS 211 (547)
Q Consensus 186 ~~~gy~sRaa~KL~ei~~kf~l~~~g 211 (547)
....|..|+|.++.-+...+....|+
T Consensus 296 ~edr~l~R~a~~~l~~l~~~~~~~~~ 321 (784)
T PF04931_consen 296 SEDRYLHRKALQFLIFLQFFEKQNPS 321 (784)
T ss_pred cccccHHHHHHHHHHHHHHHhhcCcc
Confidence 34588889888888777666554444
No 325
>PLN02244 tocopherol O-methyltransferase
Probab=30.52 E-value=65 Score=34.05 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=15.8
Q ss_pred HHHHHHHhhccCCCEEEEEec
Q psy3133 50 GALKLASGILKEGGWFVTKVF 70 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVF 70 (547)
.++.-+..+|+|||.||+=.|
T Consensus 204 ~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 204 KFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 345567789999999987543
No 326
>PLN02476 O-methyltransferase
Probab=29.79 E-value=1e+02 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred CcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEE
Q psy3133 20 WKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVT 67 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~ 67 (547)
.+||+|.-|+.. ..|. .-+..+..+|++||.+|+
T Consensus 193 ~~FD~VFIDa~K--------~~Y~------~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 193 SSYDFAFVDADK--------RMYQ------DYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCEEEECCCH--------HHHH------HHHHHHHHhcCCCcEEEE
Confidence 479999999853 1121 224556789999999987
No 327
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=29.62 E-value=58 Score=31.43 Aligned_cols=16 Identities=44% Similarity=0.414 Sum_probs=12.5
Q ss_pred HHhhccCCCEEEEEec
Q psy3133 55 ASGILKEGGWFVTKVF 70 (547)
Q Consensus 55 A~~~Lr~GGtFV~KVF 70 (547)
....|+|||.||+=+.
T Consensus 161 l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 161 LLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHhcCCCcEEEEEEc
Confidence 3578999999998544
No 328
>PRK06953 short chain dehydrogenase; Provisional
Probab=28.98 E-value=1.8e+02 Score=27.64 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=23.2
Q ss_pred CCCCCChHHHHHHHHHhCCCcccEEecCCCC
Q psy3133 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSP 31 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~~~kvDVVLSDgAP 31 (547)
++|+++......+...+...++|+|+|=...
T Consensus 50 ~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 50 ALDVADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred EecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 3689998877777666665689999996543
No 329
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.73 E-value=1.1e+02 Score=31.07 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=12.8
Q ss_pred HHhhccCCCEEEEEecc
Q psy3133 55 ASGILKEGGWFVTKVFR 71 (547)
Q Consensus 55 A~~~Lr~GGtFV~KVFr 71 (547)
...+|+|||.||+=.+.
T Consensus 167 ~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 167 LARVVKPGGIVITVTPG 183 (272)
T ss_pred HHhhccCCCEEEEEeCC
Confidence 45689999999975443
No 330
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=28.31 E-value=43 Score=34.38 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=23.9
Q ss_pred cccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEe
Q psy3133 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKV 69 (547)
Q Consensus 21 kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KV 69 (547)
+||+|.+|-|-. .|.++ ++.-|..||++||.|++-+
T Consensus 143 ~VDvI~~DVaQp----------~Qa~I---~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 143 MVDVIFQDVAQP----------DQARI---AALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -EEEEEEE-SST----------THHHH---HHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEecCCCh----------HHHHH---HHHHHHhhccCCcEEEEEE
Confidence 789999998633 23333 3445778999999998654
No 331
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=28.20 E-value=82 Score=30.59 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=16.3
Q ss_pred HHHHHHHHhhccCCCEEEEEe
Q psy3133 49 LGALKLASGILKEGGWFVTKV 69 (547)
Q Consensus 49 ~~AL~LA~~~Lr~GGtFV~KV 69 (547)
...|.-+..+|+|||.|++-.
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEc
Confidence 345667788999999999754
No 332
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=28.05 E-value=1.3e+02 Score=30.55 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcC
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKD 74 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d 74 (547)
.+|.-+..+|+|||.|++=.|....
T Consensus 163 ~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 163 KAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred HHHHHHHHHcCcCcEEEEEECCCCC
Confidence 4566677899999999887776543
No 333
>PRK12746 short chain dehydrogenase; Provisional
Probab=27.78 E-value=2.5e+02 Score=27.00 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCCCChHHHHHHHHHh--------CCCcccEEecCCCCC
Q psy3133 1 MEDITTDKCRIAITREL--------KTWKVDVVLHDGSPN 32 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l--------~~~kvDVVLSDgAPn 32 (547)
++|+++++....+...+ ...++|+|+|=.+..
T Consensus 62 ~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 101 (254)
T PRK12746 62 EADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIG 101 (254)
T ss_pred EcCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECCCCC
Confidence 36899988766554433 124699999877653
No 334
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=27.73 E-value=70 Score=34.01 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred hcCCcCCCCeeeecCCCCCchHHHHHHhhcCCe----EEeeccccc
Q psy3133 204 KFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS----IIHFDDESV 245 (547)
Q Consensus 204 kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~----vv~vD~~~~ 245 (547)
+++.+. |.+||=+|||||.=..++.+....-+ -+.+|..+-
T Consensus 55 ~~~~l~-g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h 99 (300)
T PHA03108 55 RHGILD-GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKH 99 (300)
T ss_pred hcccCC-CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcc
Confidence 445555 77999999999999999988865422 245665543
No 335
>PRK07578 short chain dehydrogenase; Provisional
Probab=27.61 E-value=2.1e+02 Score=26.66 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCCCChHHHHHHHHHhCCCcccEEecCCCC
Q psy3133 2 EDITTDKCRIAITRELKTWKVDVVLHDGSP 31 (547)
Q Consensus 2 GDIt~~~~~~~I~~~l~~~kvDVVLSDgAP 31 (547)
.|+++++....+...+ .++|+|++-.+.
T Consensus 38 ~D~~~~~~~~~~~~~~--~~id~lv~~ag~ 65 (199)
T PRK07578 38 VDITDPASIRALFEKV--GKVDAVVSAAGK 65 (199)
T ss_pred ecCCChHHHHHHHHhc--CCCCEEEECCCC
Confidence 6899988777766655 379999986653
No 336
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=27.59 E-value=81 Score=33.64 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=29.3
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcC----CeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMA----SSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~----~~vv~vD~~~ 244 (547)
+.+|.++||||||-|.=+..+++.+.. ..-++||+..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 467889999999999999998887642 2247899973
No 337
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=27.46 E-value=44 Score=36.67 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=17.5
Q ss_pred CCCeeeecCCCCCchHHHHHHh
Q psy3133 210 KSKVCVDLCAAPGGWMQVAKQN 231 (547)
Q Consensus 210 ~g~~VlDLGaaPGgWsqva~~~ 231 (547)
+..+|+|||||+|.-|-.+...
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~ 84 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDV 84 (386)
T ss_pred cceeEEEecCCCCccHHHHHHH
Confidence 3679999999999887666544
No 338
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=27.25 E-value=49 Score=33.17 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=24.0
Q ss_pred CeeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 212 KVCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 212 ~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
.+||||-||-||++.=+.+ .|-..+.++|+.+-
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~ 33 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPD 33 (335)
T ss_dssp EEEEEET-TTTHHHHHHHH-TTEEEEEEEESSHH
T ss_pred CcEEEEccCccHHHHHHHh-cCcEEEEEeecCHH
Confidence 3799999999999875544 46556778888764
No 339
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.00 E-value=2.3e+02 Score=23.52 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCccCCCC
Q psy3133 342 SKERTKLQEKMNLKMLLKGDL 362 (547)
Q Consensus 342 ~~~~~k~~~r~~l~m~~~~d~ 362 (547)
...+-....|-.|||..|+..
T Consensus 59 ~~~rIe~~Ar~~lgM~~p~~~ 79 (85)
T TIGR02209 59 RHERIEKIAKKQLGMKLPDAN 79 (85)
T ss_pred CHHHHHHHHHHhcCCCCCCCC
Confidence 344555566667999987543
No 340
>KOG2198|consensus
Probab=26.81 E-value=67 Score=35.25 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=44.8
Q ss_pred CcccEEecCCCCCCCCC-------------hhhhH-HHHHHHHHHHHHHHHhhccCCCEEEEEeccCc---CHHHHHHHH
Q psy3133 20 WKVDVVLHDGSPNVGMN-------------WVYDA-YHQCCLTLGALKLASGILKEGGWFVTKVFRSK---DYTSLLWIF 82 (547)
Q Consensus 20 ~kvDVVLSDgAPnvsG~-------------~~~D~-~~q~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~---d~~~Ll~~l 82 (547)
.+||=||+|- .+||+ |.... ..--.|-..-|.-++++|++||++|==.-... ...-+-..|
T Consensus 235 ~~fDrVLvDV--PCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 235 LKFDRVLVDV--PCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhcceeEEec--ccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 4699999997 33332 22211 00012333345567789999999986554432 111223444
Q ss_pred HcccCe---EEEec--CCCCCCCCceEEEEE
Q psy3133 83 KQLFQR---VHSTK--PQASRKESAEIFVVC 108 (547)
Q Consensus 83 kqlF~k---V~~~K--P~ASR~~SsEiYvVC 108 (547)
+.++.. |.+.. |..-|.-+.-.+.|+
T Consensus 313 ~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~~ 343 (375)
T KOG2198|consen 313 QKVGGAVELVDVSGDLPGLKRMFGSTGWKVH 343 (375)
T ss_pred HHhcCcccceeeccccccceecCCCCcceEE
Confidence 444444 44333 666565555444443
No 341
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=26.62 E-value=76 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHHHcc
Q psy3133 49 LGALKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQL 85 (547)
Q Consensus 49 ~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~lkql 85 (547)
...+..+..+|+|||.|++.......+..++..|...
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 3456778899999999988775555556667777665
No 342
>PRK06128 oxidoreductase; Provisional
Probab=26.08 E-value=2.5e+02 Score=28.42 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=20.2
Q ss_pred CCCCCChHHHHHHHHHhC--CCcccEEecCCCC
Q psy3133 1 MEDITTDKCRIAITRELK--TWKVDVVLHDGSP 31 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~--~~kvDVVLSDgAP 31 (547)
++|++++.....+...+. ..++|+|+|-.+.
T Consensus 112 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 112 PGDLKDEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred ecCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 368998766655544321 1369999988764
No 343
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=25.25 E-value=1.8e+02 Score=30.49 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=46.0
Q ss_pred CCCCCChHHHHHHHHHhC--CCcccEEecCCCC----CCCCChh---hhHHHHH----HHHHH-HHHHHHhhccCCCEEE
Q psy3133 1 MEDITTDKCRIAITRELK--TWKVDVVLHDGSP----NVGMNWV---YDAYHQC----CLTLG-ALKLASGILKEGGWFV 66 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~--~~kvDVVLSDgAP----nvsG~~~---~D~~~q~----~L~~~-AL~LA~~~Lr~GGtFV 66 (547)
.+|+++.+.+..+...++ ..+.|.|+|=.|. ..+|... .+.|... .-.+. ..+-|..+|.+||++|
T Consensus 62 ~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSil 141 (259)
T COG0623 62 PCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSIL 141 (259)
T ss_pred ecCCCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEE
Confidence 378999888777766553 2489999998863 2344332 2222221 11112 2245567888999999
Q ss_pred EEeccCc
Q psy3133 67 TKVFRSK 73 (547)
Q Consensus 67 ~KVFrg~ 73 (547)
+=.|-|.
T Consensus 142 tLtYlgs 148 (259)
T COG0623 142 TLTYLGS 148 (259)
T ss_pred EEEeccc
Confidence 9988775
No 344
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=25.15 E-value=60 Score=31.28 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHHhhccCCCEEEEEec
Q psy3133 50 GALKLASGILKEGGWFVTKVF 70 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVF 70 (547)
..+.-+..+|+|||.|++-.+
T Consensus 85 ~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 85 DLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHHcCCCCEEEEEEc
Confidence 456667789999999997543
No 345
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=24.76 E-value=1.1e+02 Score=29.44 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.0
Q ss_pred HHHHHHHHhhccCCCEEEEEec
Q psy3133 49 LGALKLASGILKEGGWFVTKVF 70 (547)
Q Consensus 49 ~~AL~LA~~~Lr~GGtFV~KVF 70 (547)
...+.-+..+|+|||.|++-.+
T Consensus 114 ~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 114 PGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred HHHHHHHHHHcCCCcEEEEEEE
Confidence 3556677789999999766444
No 346
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=24.19 E-value=87 Score=31.12 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=29.2
Q ss_pred CCCCeeeecCCCCCchHHHHHHhhcC-CeEEeecccc
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQNMMA-SSIIHFDDES 244 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~~g~-~~vv~vD~~~ 244 (547)
.+-.+||.+|++.|-=+-.+++.++. +.+++||..+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~ 80 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP 80 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcH
Confidence 45689999999999988888888764 4578999875
No 347
>PRK08177 short chain dehydrogenase; Provisional
Probab=24.13 E-value=2.2e+02 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCCCChHHHHHHHHHhCCCcccEEecCCC
Q psy3133 2 EDITTDKCRIAITRELKTWKVDVVLHDGS 30 (547)
Q Consensus 2 GDIt~~~~~~~I~~~l~~~kvDVVLSDgA 30 (547)
+|+++++....+...+...++|+|+|-.+
T Consensus 52 ~D~~d~~~~~~~~~~~~~~~id~vi~~ag 80 (225)
T PRK08177 52 LDMNDPASLDQLLQRLQGQRFDLLFVNAG 80 (225)
T ss_pred cCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence 68999887777777776668999998653
No 348
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=24.05 E-value=73 Score=33.60 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=28.2
Q ss_pred cCCCCeeeecCCCC-CchHHHHHHhhcCCeEEeeccc
Q psy3133 208 LQKSKVCVDLCAAP-GGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 208 ~~~g~~VlDLGaaP-GgWsqva~~~~g~~~vv~vD~~ 243 (547)
+.+|.+||.+||++ |.++-.+++..|...+++++..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~ 218 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRV 218 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 57899999999877 7777777777776557787654
No 349
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=23.94 E-value=52 Score=35.02 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=15.9
Q ss_pred CCCCeeeecCCCCCchHHHHHHh
Q psy3133 209 QKSKVCVDLCAAPGGWMQVAKQN 231 (547)
Q Consensus 209 ~~g~~VlDLGaaPGgWsqva~~~ 231 (547)
....+|+|||||.|.=|-.+...
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHHH
Confidence 44589999999999976666554
No 350
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=23.81 E-value=61 Score=32.81 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=14.3
Q ss_pred CCeeeecCCCCCchHHHHH
Q psy3133 211 SKVCVDLCAAPGGWMQVAK 229 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~ 229 (547)
+.+|+|+|+|+|==.-.++
T Consensus 68 ~~~~~DIGSGaGfPGipLA 86 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA 86 (215)
T ss_pred CCEEEEeCCCCCCchhhHH
Confidence 6899999999995444433
No 351
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=23.76 E-value=44 Score=34.62 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCC-cCCCCeeeecCCCCC
Q psy3133 196 FKLIQLNRKFEF-LQKSKVCVDLCAAPG 222 (547)
Q Consensus 196 ~KL~ei~~kf~l-~~~g~~VlDLGaaPG 222 (547)
|.|..+.+.|.- -.+|.++||+||||-
T Consensus 41 ~~L~~l~~~f~~g~~~g~~llDiGsGPt 68 (256)
T PF01234_consen 41 FFLKNLHETFSSGGVKGETLLDIGSGPT 68 (256)
T ss_dssp HHHHHHHHHHHTSSS-EEEEEEES-TT-
T ss_pred HHHHHHHHHhCccCcCCCEEEEeCCCcH
Confidence 345555555543 235789999999995
No 352
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.60 E-value=3e+02 Score=24.76 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCccCCCC
Q psy3133 344 ERTKLQEKMNLKMLLKGDL 362 (547)
Q Consensus 344 ~~~k~~~r~~l~m~~~~d~ 362 (547)
.--..+.|-.|||+-||.+
T Consensus 65 dyiEe~AR~~Lg~vk~gEi 83 (105)
T PRK00888 65 EAIEERARNELGMVKPGET 83 (105)
T ss_pred HHHHHHHHHHcCCCCCCCE
Confidence 3444567777999987665
No 353
>PRK08267 short chain dehydrogenase; Provisional
Probab=23.31 E-value=3.1e+02 Score=26.64 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=20.8
Q ss_pred CCCCCChHHHHHHHHHh-C--CCcccEEecCCCCC
Q psy3133 1 MEDITTDKCRIAITREL-K--TWKVDVVLHDGSPN 32 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l-~--~~kvDVVLSDgAPn 32 (547)
++|+++......+.... . ..++|+|+|=.+..
T Consensus 54 ~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 54 ALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 46899877666554432 1 35799999866543
No 354
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=77 Score=31.38 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEeccC
Q psy3133 48 TLGALKLASGILKEGGWFVTKVFRS 72 (547)
Q Consensus 48 ~~~AL~LA~~~Lr~GGtFV~KVFrg 72 (547)
..++|+.+..+|||||++-|=|=..
T Consensus 65 g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4578899999999999988876443
No 355
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=22.45 E-value=1.7e+02 Score=30.44 Aligned_cols=45 Identities=22% Similarity=-0.039 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCcccEEecCCCCCCCCChhhhHHHHHHHHHHHHHHHHhhccCCCEEEEEec
Q psy3133 9 CRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVF 70 (547)
Q Consensus 9 ~~~~I~~~l~~~kvDVVLSDgAPnvsG~~~~D~~~q~~L~~~AL~LA~~~Lr~GGtFV~KVF 70 (547)
....|.....+..+|+|+ | ++|.. .++..+...|++||.+|+=-+
T Consensus 233 ~~~~i~~~~~~~g~d~vi-d----~~g~~------------~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 233 PVEAIRALTGGFGADVVI-D----AVGRP------------ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHHHHHHHhCCCCCCEEE-E----CCCCH------------HHHHHHHHHhccCCEEEEECC
Confidence 344455555555677776 2 23321 223345668899999987543
No 356
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=22.28 E-value=1.1e+02 Score=28.46 Aligned_cols=70 Identities=23% Similarity=0.144 Sum_probs=40.9
Q ss_pred cccccccccCChhHhhhhhccccCCccchhHHHHHHHHHhcCCcCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 165 LPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 165 ~ss~~fi~~~Dp~~~~a~~~e~~~gy~sRaa~KL~ei~~kf~l~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.-+..|.++.||--. .-.. .+=||| |+++...-....+-..-+|||||-|==..++... | -.-+|+|...
T Consensus 21 ~lv~~W~E~TdP~K~-VfED------laIAAy-Li~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E-G-y~G~GiD~R~ 90 (112)
T PF07757_consen 21 WLVDNWPESTDPQKH-VFED------LAIAAY-LIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE-G-YPGWGIDARR 90 (112)
T ss_pred HHHHhCcccCCchhh-HHHH------HHHHHH-HHHHHhcccCCCCCCceEEccCCchHHHHHHHhC-C-CCcccccccc
Confidence 344568888887321 1111 244566 4445444444455567899999999766666654 2 1247888763
No 357
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=21.95 E-value=96 Score=33.59 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHHhhccCCCEEEEEecc
Q psy3133 50 GALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
..+.-+..+|+|||.|++=.+.
T Consensus 248 ~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 248 TYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred HHHHHHHHHcCCCcEEEEEEcc
Confidence 3466688999999999986653
No 358
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=21.80 E-value=96 Score=29.16 Aligned_cols=50 Identities=24% Similarity=0.133 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEeccCc--C-H-HHHHHHHH--cccCeEEEecC
Q psy3133 45 CCLTLGALKLASGILKEGGWFVTKVFRSK--D-Y-TSLLWIFK--QLFQRVHSTKP 94 (547)
Q Consensus 45 ~~L~~~AL~LA~~~Lr~GGtFV~KVFrg~--d-~-~~Ll~~lk--qlF~kV~~~KP 94 (547)
+..+...+..+..+|++||++++=+=... . . ..+...+. .+...+...|+
T Consensus 32 ~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 32 LEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEec
Confidence 45567788899999999999887543322 1 2 33344444 23344555565
No 359
>KOG4300|consensus
Probab=21.50 E-value=61 Score=33.45 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCcCCCCee--eecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 194 AAFKLIQLNRKFEFLQKSKVC--VDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 194 aa~KL~ei~~kf~l~~~g~~V--lDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
+.||-.=+...+.++.+...+ |.+|||||.=-++.--. ...+|+++|.++
T Consensus 58 ~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~ 109 (252)
T KOG4300|consen 58 DSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNE 109 (252)
T ss_pred HHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcH
No 360
>PRK05693 short chain dehydrogenase; Provisional
Probab=21.48 E-value=2.8e+02 Score=27.36 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHh--CCCcccEEecCCCCCC
Q psy3133 2 EDITTDKCRIAITREL--KTWKVDVVLHDGSPNV 33 (547)
Q Consensus 2 GDIt~~~~~~~I~~~l--~~~kvDVVLSDgAPnv 33 (547)
+|+++.+....+...+ ...++|+|+|-.+...
T Consensus 51 ~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 84 (274)
T PRK05693 51 LDVNDGAALARLAEELEAEHGGLDVLINNAGYGA 84 (274)
T ss_pred eeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 6888877766655544 2247999999876543
No 361
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.37 E-value=1.1e+02 Score=32.94 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=33.2
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCe-EEeeccccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASS-IIHFDDESV 245 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~-vv~vD~~~~ 245 (547)
++|+...||.=.|-||-|+.+++.++..+ ++|+|..|-
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~ 59 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQ 59 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHH
Confidence 47789999999999999999999998665 899998763
No 362
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=21.36 E-value=1.9e+02 Score=28.43 Aligned_cols=31 Identities=6% Similarity=-0.120 Sum_probs=17.1
Q ss_pred eeeecCCCCCchHHHHHHhhcCCeEEeeccc
Q psy3133 213 VCVDLCAAPGGWMQVAKQNMMASSIIHFDDE 243 (547)
Q Consensus 213 ~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~ 243 (547)
+|+|+|+|.|==--+++=..+...++.||-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~ 81 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESV 81 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence 8999999987422222222223345555543
No 363
>PLN02823 spermine synthase
Probab=21.26 E-value=83 Score=33.73 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=28.4
Q ss_pred CCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 211 SKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 211 g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
..+||-||+|-|+....++..-+...|++||+.+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~ 137 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ 137 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH
Confidence 4789999999999998888765566788998876
No 364
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.14 E-value=1.9e+02 Score=29.27 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhCCcchhHHHHHHhhhHHHHHHHHHHHHHH
Q psy3133 476 AASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKL 520 (547)
Q Consensus 476 tke~~~~~k~k~~~in~RpiKKv~EAkaRKK~r~~~klek~kkka 520 (547)
+-|.+.++++.++|++ ++..||+-++-..+.+||++-+.++
T Consensus 70 D~ekm~~~qk~m~efq----~e~~eA~~~~d~~~lkkLq~~qmem 110 (201)
T COG1422 70 DQEKMKELQKMMKEFQ----KEFREAQESGDMKKLKKLQEKQMEM 110 (201)
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHH
No 365
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.01 E-value=1.4e+02 Score=32.15 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEeccCcCHHHHHHHH
Q psy3133 48 TLGALKLASGILKEGGWFVTKVFRSKDYTSLLWIF 82 (547)
Q Consensus 48 ~~~AL~LA~~~Lr~GGtFV~KVFrg~d~~~Ll~~l 82 (547)
...+|.-|..+|+|||-+++=.|+|-+-.-.-+.|
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ff 257 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFF 257 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHHH
Confidence 34677889999999999999999987644333333
No 366
>PRK10742 putative methyltransferase; Provisional
Probab=20.89 E-value=1e+02 Score=32.00 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=30.0
Q ss_pred CCCC--eeeecCCCCCchHHHHHHhhcCCeEEeeccccc
Q psy3133 209 QKSK--VCVDLCAAPGGWMQVAKQNMMASSIIHFDDESV 245 (547)
Q Consensus 209 ~~g~--~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~~ 245 (547)
++|. +|||+-||.|.=+-+++.+ |+. |++|+-.|.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~-G~~-V~~vEr~p~ 121 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV-GCR-VRMLERNPV 121 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc-CCE-EEEEECCHH
Confidence 4666 8999999999999999998 554 889988875
No 367
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=20.81 E-value=1.9e+02 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHhhccCCCEEEEEecc
Q psy3133 50 GALKLASGILKEGGWFVTKVFR 71 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFr 71 (547)
..|..+..+|++||.+++-.+.
T Consensus 130 ~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 130 AFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HHHHHHHHhcCCCcEEEEEecC
Confidence 3456677899999998875543
No 368
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=20.79 E-value=2.3e+02 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=18.5
Q ss_pred HHHHHHHhhccCCCEEEEEeccCcC
Q psy3133 50 GALKLASGILKEGGWFVTKVFRSKD 74 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~KVFrg~d 74 (547)
..|.-+..+|++||.|++--+....
T Consensus 139 ~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 139 KALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred HHHHHHHHhccCCcEEEEEEecCCC
Confidence 3456677899999999987665543
No 369
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=20.55 E-value=1.3e+02 Score=31.59 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=28.5
Q ss_pred cCCCCeeeecCCCCCchHHHHHHhhcCCeEEeecccc
Q psy3133 208 LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDDES 244 (547)
Q Consensus 208 ~~~g~~VlDLGaaPGgWsqva~~~~g~~~vv~vD~~~ 244 (547)
.+.|.+|||.|-|=|-.+-.++++ |+..|+.|...|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp 167 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDP 167 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCC
Confidence 356999999999999877777777 887788775554
No 370
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=20.22 E-value=86 Score=28.02 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=15.6
Q ss_pred ecCCCCCchHHHHHH---hhcC-CeEEeeccccc
Q psy3133 216 DLCAAPGGWMQVAKQ---NMMA-SSIIHFDDESV 245 (547)
Q Consensus 216 DLGaaPGgWsqva~~---~~g~-~~vv~vD~~~~ 245 (547)
|+||.-|-|+..+.- ..+. ..|++|+..|-
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~ 34 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPS 34 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHH
Confidence 899999977776642 3443 45788887654
No 371
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=20.08 E-value=1e+02 Score=32.27 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=37.7
Q ss_pred CeeeecCCC---CCchHHHHHHhhcCCeEEeecccccc-cCC----Ccchh--HHHhhccccc----cCHHHHHhhhhHH
Q psy3133 212 KVCVDLCAA---PGGWMQVAKQNMMASSIIHFDDESVL-KHP----STTVE--IQECCKDIRV----LGRKDVRNLLKWW 277 (547)
Q Consensus 212 ~~VlDLGaa---PGgWsqva~~~~g~~~vv~vD~~~~~-~~p----~~~~~--i~~~~~Di~v----l~~~~~r~LlkWr 277 (547)
...|||||| .|.=.+|+........||.||..|+. .|. ..+.. ...+.+|++. |....++.++-|.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 788999998 35678888777677789999999864 111 01112 3566777774 6666777777776
Q ss_pred H
Q psy3133 278 K 278 (547)
Q Consensus 278 ~ 278 (547)
.
T Consensus 150 r 150 (267)
T PF04672_consen 150 R 150 (267)
T ss_dssp S
T ss_pred C
Confidence 6
No 372
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.07 E-value=2.8e+02 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.073 Sum_probs=21.3
Q ss_pred CCCCCChHHHHHHHHHhC--CCcccEEecCCCC
Q psy3133 1 MEDITTDKCRIAITRELK--TWKVDVVLHDGSP 31 (547)
Q Consensus 1 qGDIt~~~~~~~I~~~l~--~~kvDVVLSDgAP 31 (547)
++|+++++....+...+. ..++|++++-.+.
T Consensus 63 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 63 PCDVEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 469999877666655442 1479999987653
No 373
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=20.06 E-value=1.2e+02 Score=29.27 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=14.1
Q ss_pred HHHHHHHhhccCCCEEEE
Q psy3133 50 GALKLASGILKEGGWFVT 67 (547)
Q Consensus 50 ~AL~LA~~~Lr~GGtFV~ 67 (547)
..+..+..+|+|||.|++
T Consensus 114 ~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 114 EIIANMQAHTRPGGYNLI 131 (195)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 456677889999999665
Done!