RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3133
(547 letters)
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 118 bits (297), Expect = 1e-30
Identities = 43/112 (38%), Positives = 60/112 (53%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT + + L VDVVL D +PN N D L AL+ A +LK G
Sbjct: 93 DITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG 152
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAP 114
G FV KVF+ +D+ LL ++LF++V KP+ASRK S EI++V + +
Sbjct: 153 GSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204
Score = 73.0 bits (180), Expect = 7e-15
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSII 238
+GYRSRAA+KL++LN KF+ + V VDL AAPGGW QVA + + A I
Sbjct: 23 EGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKI 73
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 114 bits (287), Expect = 2e-29
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
DIT + + L KVD+VL DG+PNV D++ L L AL LA +L+ G
Sbjct: 69 DITDPETLEKLRELLPG-KVDLVLSDGAPNVSGIENTDSFISLQLVLAALLLALEVLRPG 127
Query: 63 GWFVTKVFRSKDYT-SLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
G FV KVF+ +++ LL K+ F++V KP ASR S+E ++VC +
Sbjct: 128 GNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPSSSEEYLVCLGF 177
Score = 79.2 bits (196), Expect = 3e-17
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 190 YRSRAAFKLIQLNRKFEF-LQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
Y SRAA+KL++++ +F K K +DL AAPGG+ QV + A ++ D
Sbjct: 1 YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLERGGAGKVVAVD 53
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 94.7 bits (236), Expect = 7e-23
Identities = 52/113 (46%), Positives = 75/113 (66%), Gaps = 7/113 (6%)
Query: 238 IHFDDES--VLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEG 295
I FDD + KH TT EI+ECCKD++VLG+KD + LLKW K + +KE+E+
Sbjct: 46 ISFDDAWKAIKKHKQTTPEIKECCKDLKVLGKKDFKKLLKWRKKVRKLLGLDKKEKEE-- 103
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKL 348
EEEE+V +E+DEEE+ KE+ +LK E+RRE +RK+K++ KE+ K+
Sbjct: 104 ---EEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKM 153
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 75.8 bits (187), Expect = 9e-16
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 479 LVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKARNI 538
V Y++K EIN RPI+KV EAKARKK R +R++K KKK E + E D+S+ EKA+ I
Sbjct: 94 EVAAYKEKLKEINARPIKKVAEAKARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQI 153
Query: 539 R 539
+
Sbjct: 154 K 154
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 74.5 bits (183), Expect = 2e-15
Identities = 41/109 (37%), Positives = 61/109 (55%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
D T ++ I + KVDVV+ D +PN+ W D L AL +A +LK
Sbjct: 80 DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK 139
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
G FV KVF+ ++ L ++LF++V TKPQASRK SAE+++V + +
Sbjct: 140 GNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188
Score = 62.5 bits (152), Expect = 3e-11
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
+ YRSRA+FKL+QLN+KF+ ++ +DL AAPGGW QVA
Sbjct: 10 EKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVA 50
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 55.5 bits (134), Expect = 8e-09
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 21 KVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEGGWFVTKVFRSKDYTSLLW 80
KV VV+ D +PN+ D L AL + +L GG FV KVF+ + + L
Sbjct: 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLR 176
Query: 81 IFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
+ LF +V KP +SR S E+++V
Sbjct: 177 EIRSLFTKVKVRKPDSSRARSREVYIVATGR 207
Score = 50.5 bits (121), Expect = 5e-07
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 188 KGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
KG RSRA FKL ++ + + + VDL AAPGGW Q A
Sbjct: 29 KGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYA 69
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 44.7 bits (106), Expect = 1e-04
Identities = 57/274 (20%), Positives = 116/274 (42%), Gaps = 20/274 (7%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELK------DEERREL 334
+E E+ +E EKE E + E + + +E++E ++EL++ +EIEEL+ E EL
Sbjct: 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEEL 314
Query: 335 KRKKKKVSKERTKLQEKM-NLKMLLKGDLGPTE--NDDEEMFKLSQIRTTDQLDLITASK 391
+ + +++ + +L+EK+ LK L+ E + ++ ++L +
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Query: 392 PEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLV 451
E+F EE ++ + + E EL + + + E SE D++++L
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELK------REIESLEERLERLSERLEDLKEELK 428
Query: 452 EEEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQAR 511
E E + +E + L + + E R + E+ R + ++ E R +K +
Sbjct: 429 ELEAELEELQTELEELNEELEELEEQ--LEELRDRLKELE-RELAELQEELQRLEK-ELS 484
Query: 512 RMDKMKKKLETLMEAPD-VSDAEKARNIRAPSFL 544
++ +LE A V +A P
Sbjct: 485 SLEARLDRLEAEQRASQGVRAVLEALESGLPGVY 518
Score = 34.3 bits (79), Expect = 0.19
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE------ER 331
L + K E E++ E EE + + +E+ E E EL + E+EELK E
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Query: 332 RELKRKKKKVSKERTKLQEKMNLK 355
L + + + +E +L+ ++
Sbjct: 414 ERLSERLEDLKEELKELEAELEEL 437
Score = 33.1 bits (76), Expect = 0.42
Identities = 25/84 (29%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 270 VRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
+ L+ + + ++ +E E+E E EE+ +E+E++E EKEL + +E+EEL+
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE-A 870
Query: 330 ERRELKRKKKKVSKERTKLQEKMN 353
E+ EL+ + K++ +E+ +L+E++
Sbjct: 871 EKEELEDELKELEEEKEELEEELR 894
Score = 33.1 bits (76), Expect = 0.45
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 268 KDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELK 327
+++ L+ K +E +++E E E E EEE++ +E+E+ E E EL + +EIE+L+
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911
Query: 328 DEERRELKRKKKKVSKERTKLQEKMN 353
E EL+ K +++ E +L+E++
Sbjct: 912 -ERLEELEAKLERLEVELPELEEELE 936
Score = 30.5 bits (69), Expect = 2.9
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
+ L + K L +E E E+ + EE E+ +++E ++EL +E+E+L
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER----QLEELKRELAALEEELEQL 735
Query: 327 K------DEERRELKRKKKKVSKERTKLQEKMN 353
+ +EE EL+ + +++ + +L+E++
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELE 768
Score = 29.3 bits (66), Expect = 6.4
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 279 VLHDEKTEKEKEEEKEGGEGEEEE-------KVVEDEMDEEEKELMKATKEIEELKDEER 331
E E+ + EE E + +E+ + +EL + E+ E++ E
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR-NEL 399
Query: 332 RELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEE 371
ELKR+ + + + +L E++ +L + +
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439
Score = 28.9 bits (65), Expect = 8.0
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL---KDEERRELKRKK 338
+E E+ +E E+ E E + +E + E+E+ + +EIEEL DE EL+ +
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855
Query: 339 KKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEM 372
K++ + + +L+E K L+ +L E + EE+
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEEL 889
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 44.6 bits (105), Expect = 2e-04
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 22/202 (10%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKV-VEDEMDEEEKELMKAT-KEIEELKDEERRELKRKKK 339
D K ++K+ +++ E E + V ++DE+ + +E E E+L E +L K+
Sbjct: 3941 DNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEG 4000
Query: 340 KVSKERTKLQEKMNLKM---------LLKGDLGPTENDDEEMFKLSQ-IRTTDQLDL--- 386
VSK+ E M+++ K + E+ EE L + I+ D DL
Sbjct: 4001 DVSKDSD--LEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAED 4058
Query: 387 ---ITASKPEVFADSDEEHIDIVPKKIKYNVEKSEL-DDSGLYYKNPDDSDLEFESSSED 442
+ E +EE + K +E+ E+ +D + D+ F S+ D
Sbjct: 4059 DEKMNEDGFEENVQENEESTE-DGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEAD 4117
Query: 443 ENDVEKKLVEEEFDTDEEDGLG 464
E + +K +V E + EEDG+
Sbjct: 4118 EENTDKGIVGENEELGEEDGVR 4139
Score = 32.3 bits (73), Expect = 0.78
Identities = 38/183 (20%), Positives = 88/183 (48%), Gaps = 16/183 (8%)
Query: 285 TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKE 344
T+ E E + EEE + +++E+++ ++L + E+L DE E + ++ S E
Sbjct: 3868 TKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLN--EKLWDEPNEEDLLETEQKSNE 3925
Query: 345 RTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDE---- 400
++ + +L + + D +E K + +D + + +P++ ++ +
Sbjct: 3926 QSAANNESDLVSKEDDNKALEDKDRQE--KEDEEEMSDDVGIDDEIQPDIQENNSQPPPE 3983
Query: 401 -EHIDIVPKKIKYNVEKSELD-DSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTD 458
E +D+ P+ +K + ++ ++ DS L +D D+E +++E D EK ++ D
Sbjct: 3984 NEDLDL-PEDLKLDEKEGDVSKDSDL-----EDMDMEAADENKEEADAEKDEPMQDEDPL 4037
Query: 459 EED 461
EE+
Sbjct: 4038 EEN 4040
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 41.7 bits (98), Expect = 8e-04
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK 347
EKE EKE + EEEE+ E + +EE+ T + EE+ +EE +E K+KK K KE T
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKT-----TDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Query: 348 LQEKMN 353
E +N
Sbjct: 83 EWELLN 88
Score = 36.3 bits (84), Expect = 0.037
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
DE+ E+EKEE+KE E + +K E + +EE++E K TK+++E E EL K K +
Sbjct: 37 DEEEEEEKEEKKEEEE-KTTDKEEEVDEEEEKEEKKKKTKKVKETTTEW--ELLNKTKPI 93
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 41.5 bits (97), Expect = 0.001
Identities = 48/250 (19%), Positives = 94/250 (37%), Gaps = 14/250 (5%)
Query: 277 WKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKR 336
+ +EK EK K +E+E EEE K + ++EE+ E EE EE E
Sbjct: 786 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL-----IEQEEKIKEEELEELA 840
Query: 337 KKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFA 396
+ K ++ KL E+ ++ + ++ L + ++ L + +
Sbjct: 841 LELKEEQKLEKLAEEELERLEEE-----ITKEELLQELLLKEEELEEQKLKDELESKEEK 895
Query: 397 DSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFD 456
+ +E+ + +E+ E + L++ES E+ E E+E D
Sbjct: 896 EKEEKKELEEESQKDNLLEEKENEIEER-IAEEAIILLKYESEPEELLLEEADEKEKEED 954
Query: 457 TDEEDGLGK---LLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRM 513
EE+ LL E + E+ +K N ++K + +K+ +
Sbjct: 955 NKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIE 1014
Query: 514 DKMKKKLETL 523
+ ++ E L
Sbjct: 1015 ETCQRFKEFL 1024
Score = 34.9 bits (80), Expect = 0.11
Identities = 43/242 (17%), Positives = 96/242 (39%), Gaps = 8/242 (3%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+ ++ KEEEKE EEE K++ E +E + EL+K + + +++ + K KK
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLIT--ASKPEVFADSD 399
+ + + +E L+ LK E ++EE +L +++ + A K
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLS 388
Query: 400 EEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDE 459
+ N E+ E + S+ E + E++ + K + E E +
Sbjct: 389 SAAKLKEEELELKNEEEKEAKL------LLELSEQEEDLLKEEKKEELKIVEELEESLET 442
Query: 460 EDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKK 519
+ G + + L ++ K+ E ++ + V + + +++++ +K
Sbjct: 443 KQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQK 502
Query: 520 LE 521
Sbjct: 503 ES 504
Score = 34.2 bits (78), Expect = 0.22
Identities = 46/273 (16%), Positives = 96/273 (35%), Gaps = 23/273 (8%)
Query: 273 LLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR 332
L + + D E+ + +E++ +E E EKE EI +E +
Sbjct: 222 LEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEE-----EILAQVLKENK 276
Query: 333 ELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKP 392
E +++KK +E L ++ L + DDEE K S+ + K
Sbjct: 277 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336
Query: 393 EVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVE 452
E+ E ++ K+ E+ +L L+ + +E + KK +E
Sbjct: 337 EIEELEKEL-KELEIKREAEEEEEEQL------------EKLQEKLEQLEEELLAKKKLE 383
Query: 453 EEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKK-----RVEINVRPIRKVVEAKARKKK 507
E + + L + A L+ E ++ + E ++ + K
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETK 443
Query: 508 RQARRMDKMKKKLETLMEAPDVSDAEKARNIRA 540
+ +K + + + L D + +K+ ++
Sbjct: 444 QGKLTEEKEELEKQALKLLKDKLELKKSEDLLK 476
Score = 31.9 bits (72), Expect = 1.1
Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 23/282 (8%)
Query: 262 IRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATK 321
++ K+ K + E + E+K + EEEEK EEE+E
Sbjct: 714 KKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEK--SRLKKEEEEEEKSELS 771
Query: 322 EIEELKDEER---------RELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEM 372
E+ EE E + K K +E L+E++ + L E + +
Sbjct: 772 LKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL------EEEQLLI 825
Query: 373 FKLSQIRTTDQLDLITASKPEVFAD-SDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDD 431
+ +I+ + +L K E + EE ++ + ++I EL +
Sbjct: 826 EQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 885
Query: 432 SDLEFESSSEDENDVEKKLVEEEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEIN 491
D +++ + ++ E + D E+ + + A + + +
Sbjct: 886 KDELESKEEKEKEEKKELEEESQKDNLLEEKENE-----IEERIAEEAIILLKYESEPEE 940
Query: 492 VRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAE 533
+ + K K + +K + + ++
Sbjct: 941 LLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIA 982
Score = 31.5 bits (71), Expect = 1.3
Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 10/194 (5%)
Query: 277 WKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATK-------EIEELKDE 329
+ + EK KE EKE + E+E K ++E++E EKEL + E E+L+
Sbjct: 306 LERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKL 365
Query: 330 ERRELKRKK---KKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDL 386
+ + + ++ K E +L LK E + + + +LS+ +
Sbjct: 366 QEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEE 425
Query: 387 ITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDV 446
V + + + + S+ + + +
Sbjct: 426 KKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLE 485
Query: 447 EKKLVEEEFDTDEE 460
+ +L+ +E
Sbjct: 486 QLELLLLRQKLEEA 499
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 40.3 bits (95), Expect = 0.002
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
V EK +E+++EK+ ++K E+E ++E+KE K +E EE +EE+ E + K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK--EEEEEEAEEEKEEEEEK 472
Query: 338 KKK 340
KKK
Sbjct: 473 KKK 475
Score = 37.2 bits (87), Expect = 0.020
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
K EK E+K E +E++K +EE+E + K+ EE ++EE + K+++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 343 KE 344
K+
Sbjct: 472 KK 473
>gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 245
Score = 38.4 bits (90), Expect = 0.006
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQN 231
Y SR KL + +FE K KV +D+ ++ GG+ V Q
Sbjct: 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR 100
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.8 bits (90), Expect = 0.008
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 281 HDEKTEKEK----EEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRE 333
E + EK +GG+ EEEE+ E+E +EEE+E E EE ++EE E
Sbjct: 842 QGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE------EEEEEEEEENEE 892
Score = 36.1 bits (83), Expect = 0.058
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 5/183 (2%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
H+ +TE E E++ E EE + VEDE E E E + + K+ E + K
Sbjct: 717 HEGETEAEGTEDEGEIETGEEGEEVEDE-GEGEAEGKHEVETEGDRKETEHEGETEAEGK 775
Query: 341 VSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDE 400
++ ++Q + +M KGD G + E + + + T + D
Sbjct: 776 EDEDEGEIQAGEDGEM--KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETG 833
Query: 401 EHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEE 460
E + + ++ +D G + DS+ E E E+E + E++ EEE + + E
Sbjct: 834 EQELNAENQGEAKQDEKGVDGGG--GSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Query: 461 DGL 463
+ L
Sbjct: 892 EPL 894
Score = 34.6 bits (79), Expect = 0.16
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 18/192 (9%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
D K E E EE + GE E E E E++ E+ + E + + E + +K+
Sbjct: 705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKET 764
Query: 342 SKERT------------KLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITA 389
E ++Q + +M KGD G + E + + + T
Sbjct: 765 EHEGETEAEGKEDEDEGEIQAGEDGEM--KGDEGAEGKVEHEGETEAGEKDEHEGQSETQ 822
Query: 390 SKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKK 449
+ D E + + ++ +D G D D E E E+E + E++
Sbjct: 823 ADDTEVKDETGEQELNAENQGEAKQDEKGVDGGG----GSDGGDSEEEEEEEEEEEEEEE 878
Query: 450 LVEEEFDTDEED 461
EEE + +EE+
Sbjct: 879 EEEEEEEEEEEN 890
Score = 31.5 bits (71), Expect = 1.3
Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 41/218 (18%)
Query: 282 DEKTEKEKEEEKEG-------------GEGEEEEKVVEDEMDEEEKELMKATKEIEELKD 328
+ +TE + E E EG GE E +E + E + EE E T E E +D
Sbjct: 670 EGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET-EAEGTED 728
Query: 329 EERRELKRKKKKVSKE-RTKLQEKMNLKMLLKGDLGPTENDDEEMFKLS----------- 376
E E + ++V E + + K ++ +GD TE++ E +
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVET--EGDRKETEHEGETEAEGKEDEDEGEIQAG 786
Query: 377 ---QIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDS- 432
+++ + + + E A +EH + K E + L +N ++
Sbjct: 787 EDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAK 846
Query: 433 ------DLEFES---SSEDENDVEKKLVEEEFDTDEED 461
D S SE+E + E++ EEE + +EE+
Sbjct: 847 QDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Score = 30.7 bits (69), Expect = 2.4
Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 9/178 (5%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIE-ELKDEERRELKRKKKKVSKE 344
E E+ E EG GEE E E + E K ++ EI E K E+ E + + K+ +
Sbjct: 648 EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
Query: 345 RTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHID 404
E++ + + + E + E + ++ + + + E D E
Sbjct: 708 GETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEH- 766
Query: 405 IVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEEDG 462
+ + E E +D G + D E + E VE + E + DE +G
Sbjct: 767 ----EGETEAEGKEDEDEG---EIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEG 817
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 38.4 bits (89), Expect = 0.011
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+E+ E+E+E+E E EGE+EE+ E E D +E M+ + E + +E + +R +
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAER-RNSE 509
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTE 366
+++ E + P E
Sbjct: 510 MAGISRMSEGQQPRGSSVQPESPQE 534
Score = 29.5 bits (66), Expect = 5.4
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 9/159 (5%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+ + E EEEE V E+E +EEE+E + E EE +DEE E
Sbjct: 424 ASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Query: 343 KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEH 402
+E E GD E +++ + S++ ++ + +
Sbjct: 484 EEMEGSSE---------GDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQE 534
Query: 403 IDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSE 441
+ P+ + E D+ L ++P S E E +
Sbjct: 535 EPLQPESMDAESVGEESDEELLAEESPLSSHTELEGVAT 573
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 37.0 bits (86), Expect = 0.012
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
D K E +E+ + E +EE+K E++++ EE E + ++ EE + + ELK + K+
Sbjct: 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKL 66
Query: 342 SKERTKLQEKM 352
+E KL+ ++
Sbjct: 67 KEENKKLENEL 77
Score = 31.3 bits (71), Expect = 1.0
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+E KE E ++E EE+ + E E +E ++ ++ + E +E +LK + KK+
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKL 73
Query: 342 SKERTKLQEKM 352
E L++++
Sbjct: 74 ENELEALKDRL 84
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 37.8 bits (88), Expect = 0.016
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
++ E+ +E+E E E V E + + E+ + + +E ELK REL+ K+++
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELK----RELEELKREIE 453
Query: 343 KERTKLQE 350
K ++L+
Sbjct: 454 KLESELER 461
Score = 33.9 bits (78), Expect = 0.26
Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 41/235 (17%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEE-----------R 331
E+T + EEE + E EE E E E E E + + KD E
Sbjct: 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE 487
Query: 332 RELKRKKKKVSK-ERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQL------ 384
+EL+ KKK+V + ER + + K+ L G P + E L I ++
Sbjct: 488 KELEEKKKRVEELERKLAELRKMRKLELSGKGTPVK--VVEKLTLEAIEEAEEEYGIKEG 545
Query: 385 DLITASKPE-VFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDE 443
D+I P A + EE ID P+ I E S + E E
Sbjct: 546 DVILVEDPSGGGARTAEELIDKKPRAIIRGEEMSHAAAEEFF-------KNEIPVLPEG- 597
Query: 444 NDVEKKLVEEEFDTDEEDGLGKLLRYWEKSYNAA----------SLVNEYRKKRV 488
DV+ ++E D E+ L + + W+K + ++ EYR++R
Sbjct: 598 -DVQIIRLDEFAVVDSEE-LRRAIEEWKKRFEERERRQKEEDILRIIEEYRRERR 650
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 36.9 bits (86), Expect = 0.020
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+ E K E E EEEK D + EE +L +EEL DE + +
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGG 69
Query: 342 SKERTKLQEK 351
E + + K
Sbjct: 70 GGEEEEEEAK 79
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 35.0 bits (81), Expect = 0.029
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRE-----LKR 336
+ ++E E+ K +G+ E + + D+E++E + + I+E DE R++ K
Sbjct: 29 VDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQKEKE 88
Query: 337 KKKKVSKERTKLQEK 351
+ +K +E K+Q++
Sbjct: 89 EIEKYREENPKIQQQ 103
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 37.0 bits (85), Expect = 0.030
Identities = 53/262 (20%), Positives = 105/262 (40%), Gaps = 11/262 (4%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+K +E ++ E + E E E E EE+ E + KE + K + ++ +KKK
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 343 KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLIT--ASKPEVFADSDE 400
+ + K +E LK + DE K + + D+ A K + E
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 401 E--HIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVE----EE 454
E + KK + + E K D++ + E + + ++ +K +E
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Query: 455 FDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMD 514
EE + E++ A KK+ + ++ ++ +A+ +KK +A++ +
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD-ELKKAEELKKAEEKKKAEEAKKAE 1573
Query: 515 KMKKKLETLMEAPDVSDAEKAR 536
+ K L +A + AE+AR
Sbjct: 1574 --EDKNMALRKAEEAKKAEEAR 1593
Score = 31.6 bits (71), Expect = 1.2
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 8/211 (3%)
Query: 254 EIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE 313
E + ++ R+ + K K +K E+ K + +E + EEE+K VE +E
Sbjct: 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
Query: 314 KELMKATKEIEELKDEERRELKRK---KKKVSKERTKLQEKMNLKMLLKGDLGPTENDDE 370
+E KA EELK E + KK +++ K +E + K + + E
Sbjct: 1644 EEKKKA----EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
Query: 371 EMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPD 430
E K +++ + + A + + + ++ + K+ + + +K+E K
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Query: 431 DSDLEFESSSEDENDVEKKLVEEEFDTDEED 461
+ E +E EK+ V EE + DEED
Sbjct: 1760 AHLKKEEEKKAEEIRKEKEAVIEE-ELDEED 1789
Score = 31.6 bits (71), Expect = 1.4
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEK----ELMKATKEIEELKDEE-RREL 334
+ +++K E E EE +K E + E E+ E +K +E ++K EE ++E
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
Query: 335 KRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEV 394
+ KKK + + +EK + L K + E EE+ K + ++LD
Sbjct: 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEE----EKKAEEIRKEKEAVIEEELD--------- 1786
Query: 395 FADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDL-EFESSSEDENDVEKKLVEE 453
+ DE+ V KKIK + G N +D E E S+ E K + E
Sbjct: 1787 --EEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLE 1844
Query: 454 EFDTDEEDGLGK 465
E D E+ K
Sbjct: 1845 EADAFEKHKFNK 1856
Score = 31.3 bits (70), Expect = 1.8
Identities = 52/267 (19%), Positives = 104/267 (38%), Gaps = 12/267 (4%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+E + E + E EEE+ E+ E+ + +A K+ EE K + K ++++
Sbjct: 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERN 1250
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTEN--DDEEMFKLSQIRTTDQL----DLITASKPEVF 395
++E K +E + E +E+ K + + D+ + A + +
Sbjct: 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
Query: 396 ADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDE-NDVEKKLVEEE 454
A+ ++ + K + + K ++ ++ DE E+K E
Sbjct: 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
Query: 455 FDTDEE----DGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQA 510
+E D K +K+ A E +KK E+ K +A+KK +
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
Query: 511 RRMDKMKKKLETLMEAPDV-SDAEKAR 536
++ D+ KKK E +A + AE+A+
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAK 1457
Score = 31.3 bits (70), Expect = 1.9
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 256 QECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKE 315
E K L +K+ K ++ E+ K K EE + E+++K E + DEEEK+
Sbjct: 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Query: 316 LMKATKEIEELKDEERRELKR-----------KKKKVSKERTKLQEKMNLKMLLKGDL-- 362
+ K+ EE K EE R+ K +K+++ ++ N +++G
Sbjct: 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817
Query: 363 GPTENDDEEMF 373
ND +EM
Sbjct: 1818 NLVINDSKEME 1828
Score = 30.5 bits (68), Expect = 2.8
Identities = 43/255 (16%), Positives = 98/255 (38%), Gaps = 19/255 (7%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
DE + E++++ + + + EE DE ++ +E K ++ +E ++ + K +
Sbjct: 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEE 401
+ + + + + K ++ + A + + A+ D++
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-------EKKKADEAKKKAEEDKK 1405
Query: 402 HIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEED 461
D + K + E K D++ + E + + + KK EE +E
Sbjct: 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEA- 1462
Query: 462 GLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLE 521
+K A +E +KK E K +A+KK +A++ + KKK +
Sbjct: 1463 ---------KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
Query: 522 TLMEAPDVSDAEKAR 536
+A + A++A+
Sbjct: 1514 EAKKAEEAKKADEAK 1528
Score = 30.5 bits (68), Expect = 3.1
Identities = 54/259 (20%), Positives = 96/259 (37%), Gaps = 17/259 (6%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+K E+ K++ + EE K + E + + EE + ++ + KKK
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 343 KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEH 402
+ K +EK K + DE + + D+ K E +DE
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK----KKAEEKKKADE-- 1435
Query: 403 IDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEEDG 462
KK + + E K +++ + E + + + KK EE DE
Sbjct: 1436 ---AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE--AKKKAEEAKKADE--- 1487
Query: 463 LGKLLRYWEKSYNAASLVNEYRKKRVEI-NVRPIRKVVEAKARKKKRQARRMDKM--KKK 519
K +K + A E +KK E +K EAK ++ ++A K KKK
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
Query: 520 LETLMEAPDVSDAEKARNI 538
+ L +A ++ AE+ +
Sbjct: 1548 ADELKKAEELKKAEEKKKA 1566
Score = 30.1 bits (67), Expect = 4.6
Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 8/248 (3%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEK---ELMKA--TKEIEELKDEERRELKRK 337
+K + K++ E + EE +K E + EE K E KA K+ +ELK E + +
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 338 KKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFAD 397
KKK + + ++K + E EE+ KL + + + ++
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
Query: 398 SDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDT 457
+ + + KK++ +K + + + + +++ E + E K EE
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Query: 458 DEEDGLGKLLRYWEKSYNAASLVNEYRKKRVE--INVRPIRKVVEAKARKKKRQARRMDK 515
EED K +K A E +KK E ++K E K + + ++
Sbjct: 1683 AEEDE-KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 516 MKKKLETL 523
KKK E
Sbjct: 1742 DKKKAEEA 1749
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 36.5 bits (85), Expect = 0.031
Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 14/154 (9%)
Query: 318 KATKEIEELKDEERRELKRKKKKVSKERTK----------LQEKMNLKMLLKGDLGPTEN 367
A +E + K ++ + K ++KE K Q L L +
Sbjct: 10 LAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 368 DDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYK 427
+ ++ K +K +E + K ++K + +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAK----KKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Query: 428 NPDDSDLEFESSSEDENDVEKKLVEEEFDTDEED 461
+ +D + + +D+ D + +++ + D+ED
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159
Score = 31.5 bits (72), Expect = 1.2
Identities = 17/65 (26%), Positives = 37/65 (56%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
L D+ + + ++E + + ++++ EDE +E KEL K + + + + DE+ E R+ +
Sbjct: 142 LDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQAR 201
Query: 340 KVSKE 344
K +K
Sbjct: 202 KDAKL 206
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 35.1 bits (81), Expect = 0.035
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 270 VRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
VRNL WK+ + + ++EEE E +E E+ ++ E K E
Sbjct: 78 VRNLPAMWKIFRELSSSDDEEEETEEESTDETEQ-----------------EDPPETKTE 120
Query: 330 ERRELKRKKKKVSKERTKLQEK 351
+ + KR+ K E+ K + +
Sbjct: 121 SKEKKKREVPKPKTEKEKPKTE 142
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 36.5 bits (85), Expect = 0.037
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE-KELMKATKEIEELKDEERRELKRKKKKV 341
K + + G E EE DE EE +E++ A + L EER+E K KKK
Sbjct: 743 TKALPSEATGEYGNGDESEESDF-DEYKLEEAREMLLA---MHLLSAEERQEKKAKKKNS 798
Query: 342 SKERTKLQEKM-NLKMLLKGDLGPTENDDEE 371
L + L+ +G ++DE+
Sbjct: 799 GPAL--LSSALDRLRRRRRGGYQRLPDEDED 827
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 36.3 bits (85), Expect = 0.040
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKEL----MKATKEIEELKDEERRELKRK 337
E EE + + EEEE +D + +E EL ++ K + + + R+ ++K
Sbjct: 182 PAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKK 241
Query: 338 KKKVSKERTKLQEKMN-LKMLLKGDLGPT 365
+ + K + LK LK L T
Sbjct: 242 VEGRLAQHKKYAKLREKLKEELK-SLRLT 269
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 36.2 bits (83), Expect = 0.044
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
+E+ E E EE++E E E KVV+++ +EEE+E +K K+ +L+ + ++ + K
Sbjct: 141 EEEEEVEMEEDEEYYEKEPG-KVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDNGK 198
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 34.9 bits (81), Expect = 0.047
Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 293 KEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELK-----DEERRELKRKKKKVSKERTK 347
+ + + + ++ E++E ++ + + +IE+LK EER EL + K++ KE K
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 348 LQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLI 387
L+ ++ + ++ ++ K + R TD + +
Sbjct: 122 LKAELEKYEKNDPERIEKLKEETKVAKEAANRWTDNIFSL 161
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional.
Length = 215
Score = 35.1 bits (80), Expect = 0.061
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVE--DEMDEEEKELMKATKEIEELKD---EERREL 334
L + K E EE + E +E+ VE + +KEL A KEIE LKD ER E
Sbjct: 25 LEESKLENMNSEESQTITEETQEQAVEGAETETSLQKELDNAKKEIESLKDSWARERAEF 84
Query: 335 KRKKKKVSKERTKLQEKMNLKMLLKGDLGPTEN 367
+ K++ ++E ++ K +K L+ G L P +N
Sbjct: 85 QNFKRRSAQEFVSIR-KEAVKSLVSGFLNPIDN 116
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 34.1 bits (78), Expect = 0.077
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+E + EK+E+ E E E+EE++ E E E+E+E+++ +E EE +E+ +LK +KK
Sbjct: 40 NEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVE-DEEEEEEDEEDNVDLKDIEKKN 98
Query: 342 SKERTKLQEKMNLKMLL 358
+ + N + L+
Sbjct: 99 INDIFNSTQDDNAQNLI 115
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 35.3 bits (82), Expect = 0.078
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEM-----DEEEKELMKATKEIEELKDEERRELKRKK 338
K +K G +E E++V+D D++ KE ++A E EE + LK +
Sbjct: 489 KEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEG 548
Query: 339 KKVSKER 345
K+ +
Sbjct: 549 DKLPEAD 555
Score = 30.3 bits (69), Expect = 3.1
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKE-----IEELKD----EER 331
+ + +K KE + E EE +E + EE +L +A K+ IE LK+ E++
Sbjct: 516 YAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDK 575
Query: 332 RELKRKKKKVSKERTKLQEKM 352
E++ K +++ K + E+M
Sbjct: 576 EEIEAKTEELQKVVQPIGERM 596
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 33.9 bits (77), Expect = 0.11
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERREL 334
EK +E+EE +E E E E+ +++ D+EE+E + + IEE D+ E+
Sbjct: 129 EKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEI 180
Score = 28.1 bits (62), Expect = 9.3
Identities = 17/67 (25%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
R+++ ++W + +EK ++ +++E++ E E EE+ +E++ D+ E E+++ E E
Sbjct: 135 REELEERMEWER--REEKIDEREDQEEQ--EREREEQTIEEQSDDSEHEIIE-QDESETE 189
Query: 327 KDEERRE 333
D+++ E
Sbjct: 190 SDDDKTE 196
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 34.6 bits (79), Expect = 0.13
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVE--DEMDEEEKEL-----MKATKEIEELKDEERRELKR 336
+ K+ E E E VV +D+E K+ KA ++++E+ + R
Sbjct: 79 RATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVR 138
Query: 337 KKKKVSK----ERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTD 382
K++KV K + E + + EN+ EE L + D
Sbjct: 139 KRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
Score = 29.6 bits (66), Expect = 5.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 498 VVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKA 535
V E K KK R+ R++ KM + +E +VSD E++
Sbjct: 128 VEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEES 165
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 35.0 bits (81), Expect = 0.13
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK 347
EEE E E E E ++E E+ L + K+I++L +EE+ +K K ++ E
Sbjct: 248 SLEEELEKLTEEISEL--EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
Query: 348 LQEKMNLK 355
L+ + K
Sbjct: 306 LERSIAEK 313
Score = 33.9 bits (78), Expect = 0.24
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 250 STTVEIQECCKDIRVLGR--KDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVED 307
EI + I R +D L + D+ + +E E+E E + + +
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN 353
E E ++EL E+EE+ D+E E + + K ++ KL+ ++N
Sbjct: 358 EYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREIN 402
Score = 32.3 bits (74), Expect = 0.74
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEK---VVEDEMDEEEKELMKATKEIEELKDEERRELKR 336
L +E E ++E E E EE +K DE+ + ++L K +EI ELK E R +
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
Query: 337 KKKKVSK 343
++ +
Sbjct: 415 LQRLSEE 421
Score = 31.6 bits (72), Expect = 1.2
Identities = 40/255 (15%), Positives = 94/255 (36%), Gaps = 16/255 (6%)
Query: 280 LHDEKTEKEKEEE---KEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKR 336
L + ++E E E + E+ + +++ + KEIE+L+ EE + +R
Sbjct: 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
Query: 337 KKKKVSKERTKLQEKMNLKMLLK---GDLGPTENDDEEMFKLSQIRTTDQLDLITASKPE 393
++ + QE N+K LK + E D L ++ + L+ + A
Sbjct: 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEED------LHKLE--EALNDLEARLSH 790
Query: 394 VFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEE 453
+ + + +++ + + L + LE E E ++ K +
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
Query: 454 EFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEI--NVRPIRKVVEAKARKKKRQAR 511
+ + E+ GK E+ + + + + ++ + + RK +
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
Query: 512 RMDKMKKKLETLMEA 526
+++K +K+L L
Sbjct: 911 QIEKKRKRLSELKAK 925
Score = 30.0 bits (68), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
D K EK EE +E E E ++ DE ++ + L E K E + L ++K++
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERL-----RREREKAERYQALLKEKREY 223
Score = 29.3 bits (66), Expect = 6.5
Identities = 43/255 (16%), Positives = 97/255 (38%), Gaps = 23/255 (9%)
Query: 282 DEKTEKEKE-EEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR------EL 334
E E E EE E + EE + + E + + E+ +L++E R E+
Sbjct: 758 SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREI 817
Query: 335 KRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEV 394
++K +++ E+ L++++ + DL E+ + + + + + + +
Sbjct: 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
Query: 395 FADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEE- 453
D + D+ K E D+ + + E E+ E + +L +
Sbjct: 878 -RDLESRLGDL----------KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
Query: 454 EFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKV--VEAKARKK-KRQA 510
E +E + ++ L E + ++ IR + V A ++ +
Sbjct: 927 EALEEELSEIEDPKGE-DEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL 985
Query: 511 RRMDKMKKKLETLME 525
+R+D++K+K L E
Sbjct: 986 KRLDELKEKRAKLEE 1000
Score = 29.3 bits (66), Expect = 7.8
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKA----TKEIEELKDEERR--ELKRKKK 339
E K E++E E E + V+ E+ E+E+ I+E ++ +R ELK K+
Sbjct: 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA 996
Query: 340 KVSKERTKLQEKMN 353
K+ +ER + E++
Sbjct: 997 KLEEERKAILERIE 1010
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 34.5 bits (80), Expect = 0.14
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+E++++ EE K VE+E+++ EKE+ + +EI EL+ E +EL+++ +++
Sbjct: 69 LNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELE-NEIKELEQEIERLE 127
Query: 343 K 343
Sbjct: 128 P 128
Score = 30.7 bits (70), Expect = 2.6
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK 347
E+ E +E G E + +++E++E EKE +E++EL + EL + + E +
Sbjct: 203 ERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262
Query: 348 LQEKMNLKM 356
+
Sbjct: 263 AEALSKFLK 271
Score = 29.1 bits (66), Expect = 7.4
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 38/147 (25%)
Query: 300 EEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLK 359
EEE + + E ++EL + KE E L +E LK KK +E L E +
Sbjct: 208 EEEGTPSELIREIKEELEEIEKERESLLEE----LKELAKKYLEELLALYEYL------- 256
Query: 360 GDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSEL 419
E + E LS+ TD+ I + D KK+K ++K+
Sbjct: 257 ------EIELERAEALSKFLKTDKTFAIEG-----WVPEDRV------KKLKELIDKAT- 298
Query: 420 DDSGLYYKNPDDSDLEFESSSEDENDV 446
G Y +EF E+E +V
Sbjct: 299 --GGSAY-------VEFVEPDEEEEEV 316
>gnl|CDD|236971 PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose
methyltransferase; Provisional.
Length = 357
Score = 34.0 bits (79), Expect = 0.17
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 215 VDLCAAPGGWM-QVAKQNMMASSI 237
VDL AAPGGW Q+ ++ M +++
Sbjct: 216 VDLGAAPGGWTYQLVRRGMFVTAV 239
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 33.9 bits (78), Expect = 0.18
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 309 MDEEEKELMKATKE-IEELKDEERRELKR-----KKKKVSKERTKLQEKMNLK 355
++EEE ++ + E+ ++ E E +R ++++ KER K Q+K +
Sbjct: 149 LEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQ 201
Score = 30.8 bits (70), Expect = 1.9
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 279 VLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKK 338
VL +E+ + ++++++ + E ++E E+ +E E K +++ +R+K
Sbjct: 148 VLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRR---EEKERRKKQDKERKQREK 204
Query: 339 KKVSK 343
+ K
Sbjct: 205 ETAEK 209
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 34.3 bits (79), Expect = 0.20
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD--EERRELKRKKKKVSK 343
E KE+EKE E E + E+ E +EL K KE++EL++ EE EL+++ + +
Sbjct: 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
Query: 344 ERTKLQEKM 352
+ KL+EK+
Sbjct: 253 SKRKLEEKI 261
Score = 33.5 bits (77), Expect = 0.37
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
++ EK EE +E E EE K ++E++ +K L E+L+ +E EL++ K+++
Sbjct: 348 KELEKRLEELEERHELYEEAKAKKEELERLKKRL--TGLTPEKLE-KELEELEKAKEEIE 404
Query: 343 KERTKLQEKMN 353
+E +K+ ++
Sbjct: 405 EEISKITARIG 415
Score = 32.3 bits (74), Expect = 0.70
Identities = 63/280 (22%), Positives = 126/280 (45%), Gaps = 37/280 (13%)
Query: 254 EIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKE--EEKEGGEGEEEEKVVEDEMDE 311
EI+E + +R R+ + L K +++ ++ ++ + EEK EE + +E ++
Sbjct: 470 EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
Query: 312 EEKELMKATKEIEELKDEERR--ELKRKKKKVSKERTKLQEKMN--LKMLLKGDLGPTEN 367
+++L+K EI+ LK E + ELK+K ++ K+ +L+E++ LK L + E
Sbjct: 530 LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEE 589
Query: 368 DDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYK 427
+E + +L + E+ ++ K++K + ELD + ++
Sbjct: 590 LEERLKELEPFY-----------NEYLELKDAEKELEREEKELK--KLEEELDKA---FE 633
Query: 428 NPDDSDLEFESSSEDENDVEKKLVEEEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKR 487
+++ E ++ ++EKK EEE++ E Y E S E R
Sbjct: 634 ELAETEKRLEELRKELEELEKKYSEEEYEELRE-------EYLELS-------RELAGLR 679
Query: 488 VEIN-VRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEA 526
E+ + R+ ++ K K + +K KK+LE L +A
Sbjct: 680 AELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 34.0 bits (79), Expect = 0.21
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 287 KEKEEEKEGGEGEEEEKVVED---EMDEEEKE-LMKATKEIEELKDEERRELKRKKKKVS 342
K+ E K EE ++++E+ E + +KE L++A +EI +L++E +EL+ ++ ++
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 343 K-ERTKLQEKMNLK 355
K E+ LQ++ NL
Sbjct: 86 KLEKRLLQKEENLD 99
Score = 30.1 bits (69), Expect = 3.1
Identities = 17/89 (19%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEM---DEEEKELMKATKEIEELKDEERRELKR 336
E E+ E +K ++E+ ++ ++ ++ E+EL K KE+E+ + E ++ +
Sbjct: 73 FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Query: 337 KKKKVSKERTKLQEKMNL------KMLLK 359
++ + ++ +L+ L ++LL+
Sbjct: 133 LEELIEEQLQELERISGLTAEEAKEILLE 161
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 34.1 bits (78), Expect = 0.22
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKE--------IEELKDEERRELK 335
K + ++ GE E+E+ + E + DE+E E ++ ++ EE + E+ E
Sbjct: 635 DENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEAN 694
Query: 336 RKKKKVSKE-RTKLQEKMNLKMLLKGDLGPTEN--DDEEMFKLSQ 377
+ K R L + +NL L G E DDE+M +L
Sbjct: 695 EGVVPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDEQMMRLDT 739
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 33.6 bits (77), Expect = 0.23
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD-EERRELKRKKKK 340
+ + +K EE++E E E EE++ D M + E + +E+E L+ EE +EL+ ++
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRAD 166
Query: 341 VS------------KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIR 379
V K+ + +E+ + ++ GP +D
Sbjct: 167 VDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSE 217
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 33.7 bits (77), Expect = 0.25
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 263 RVLGRKDVRNLLKWWKV------LHDEKTEK--EKEEEKEGGEGE-EEEKVVEDEMDEEE 313
L R +R ++ W+ + K + EK E K + ++ + E E++ E
Sbjct: 306 WTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREA 365
Query: 314 KELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEK 351
++ A + + RR + KKK + + ++
Sbjct: 366 RQERAA--AMARAR--ARRAAVKAKKKGLIDASPNEDT 399
>gnl|CDD|129570 TIGR00478, tly, hemolysin TlyA family protein. Hemolysins are
exotoxins that attack blood cell membranes and cause
cell rupture, often by forming a pore in the membrane.
At least two members of this protein family have been
characterized indirectly as pore-forming hemolysins, one
from the spirochete Serpula (Treponema) hyodysenteriae
and one from Mycobacterium tuberculosis. However,
homology domains in this protein suggest
methyltransferase activity (pfam01728) and RNA-binding
activity (pfam01479) [Unknown function, General].
Length = 228
Score = 33.2 bits (76), Expect = 0.26
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQN 231
+ SR KL + +F K+K+ +D+ ++ GG+ A Q
Sbjct: 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK 96
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 33.4 bits (77), Expect = 0.27
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 13/60 (21%)
Query: 310 DEEEKELMKATKEIEELKDEERRELKRKKKKVSKERT----------KLQEKMNLKMLLK 359
+EEE++++KA EE + EE +E K +KKK +E KL+EK K K
Sbjct: 266 EEEEEKILKAA---EEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 30.3 bits (69), Expect = 2.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK------KKKVSKERTKLQEK 351
EEEE+ + +EE +E + KE E K EER K +K KER K K
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKE--EKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
>gnl|CDD|225485 COG2933, COG2933, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 358
Score = 33.2 bits (76), Expect = 0.31
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 192 SRAAFKL-------IQLNRKFEFLQKSKVCVDLCAAPGGWM-QVAKQNMMASSIIH 239
SR+ KL I + + L VDL A PGGW Q+ K+NM ++ +
Sbjct: 186 SRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDN 241
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 32.7 bits (75), Expect = 0.34
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKRKKK 339
+ E E+ E+ E E EEEE E+E++EE++E+ + ++EELKD+ R E + +K
Sbjct: 12 DAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRK 71
Query: 340 KVSKERTKLQEKMNLKMLLK 359
+ +ER + ++ K
Sbjct: 72 RTEREREEAKKYAIEKFAKD 91
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 33.3 bits (76), Expect = 0.34
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 283 EKTEKEKEEEKEGGEGEE--EEKVVED--EMDEEEKELMKATKEIEELKDEERRELKRKK 338
KT+ KE + E G+ EE +E+V E+ + E+ KE K K EE K++ + K K+
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Query: 339 --KKVSKERTKLQEKMNLKM 356
KKV + R + +EK ++
Sbjct: 150 KEKKVEEPRDREEEKKRERV 169
Score = 30.6 bits (69), Expect = 2.1
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
EKEKE+EK+ E + E+ + E K K + + ++ + K+++ +
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRE-RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Query: 343 KERTKLQEK 351
+E K + +
Sbjct: 201 REAVKGKPE 209
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.5 bits (77), Expect = 0.37
Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 31/313 (9%)
Query: 260 KDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDE----------- 308
K+++ LG ++++K + E+ EE+ E + ++EE++
Sbjct: 1038 KELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIW 1097
Query: 309 ------MDEEEKELMKATKEIEELKDEE-----RRELKRKKKKVSKERTKLQEKMNLKML 357
+++ EL K KE+E+LK+ +L + ++ + ++ ++++ +
Sbjct: 1098 SLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQR 1157
Query: 358 LKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKS 417
LK + + + + + + K V +S D K K
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Query: 418 ELDDSGLYYKNPDDSDLEFES-----SSEDENDVEKKLVEEEFDTDEEDGLGKLLRYWEK 472
+ + +S S+ N + +EF +D+ GK ++
Sbjct: 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKR 1277
Query: 473 SYNAASLVNEYRKKR--VEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDV- 529
+A KR E N K KK+ + KKK A
Sbjct: 1278 V-SAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKK 1336
Query: 530 SDAEKARNIRAPS 542
S + + S
Sbjct: 1337 SKTRVKQASASQS 1349
Score = 30.0 bits (68), Expect = 3.9
Identities = 49/268 (18%), Positives = 95/268 (35%), Gaps = 17/268 (6%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
L+ E +KEKE EK + +D E+ + +A +E EE++++E + +R K
Sbjct: 1107 LNAELEKKEKELEKL------KNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLK- 1159
Query: 340 KVSKERTK---LQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFA 396
SK + K L++ K K + + + R KP+
Sbjct: 1160 --SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Query: 397 DSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFD 456
+ ++ K +KS + N S + + S D+ E K
Sbjct: 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKR 1277
Query: 457 TDEEDGLGKLL-RYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDK 515
+ + N S + KK+V+ + ++ K + +K+ AR+ K
Sbjct: 1278 VSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARK-KK 1336
Query: 516 MKKKLETLMEAPDVSDAEKARNIRAPSF 543
K +++ +A + R R
Sbjct: 1337 SKTRVK---QASASQSSRLLRRPRKKKS 1361
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 33.2 bits (76), Expect = 0.39
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
D++ E KE K+ + ++ V+DE D E+ KA + E+LK EE + ++++
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKA--KEEKLKQEENEKKQKEQADE 422
Query: 342 SKERTKLQEK 351
KE+ + E+
Sbjct: 423 DKEKRQKDER 432
Score = 32.1 bits (73), Expect = 0.73
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 282 DEKTEKEKEEEKE-GGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKK 338
+ T+K E + E E E K E+++ +EE E K KE + E+R++ +RKK
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE--KKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 32.7 bits (75), Expect = 0.42
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDE----EEKELMKATKEIEELKDEERRELKRK 337
EK + K + K + +++ D + E++ K E++E K E+++E K K
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK-K 341
Query: 338 KKKVSKERTKLQEKMNLKMLLKGDL 362
KK++ + ++ EK+ ++ K +
Sbjct: 342 KKQIERLEERI-EKLEVQATDKEEN 365
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 32.0 bits (73), Expect = 0.44
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD-------------- 328
+K++K+K+++K+ + ++++K + + E E +L TK E
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYALHK 148
Query: 329 ---EERRELKRKKKKVSKERTKLQEKMNL 354
+ R + KR+ + KE +LQ
Sbjct: 149 DIYQSRLDRKRRAEVAKKEAEELQNPGFF 177
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 32.4 bits (74), Expect = 0.45
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEE 312
D E EK+EE+E E EE+E +D+ D++
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 30.5 bits (69), Expect = 1.8
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 260 KDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKA 319
K + L + + + ++ EK EK+ E E E+ EDE DEEE+E +
Sbjct: 125 KAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE--EE 182
Query: 320 TKEIEELKDEE 330
+E E+ D++
Sbjct: 183 EEEDEDFDDDD 193
Score = 28.6 bits (64), Expect = 7.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKE 315
K+ E + ++E+EK+ E EEEE+ ED D+++ +
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 32.7 bits (75), Expect = 0.49
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 18/93 (19%)
Query: 278 KVLHDEKTEKEKE---------EEKEGGEGEEEEKVVEDE--MDEEEKELM----KATKE 322
K+ E+ +KE+E EK G + EE K ++ E ++EEE++ M KA K
Sbjct: 92 KLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKS 151
Query: 323 IEELKDEERRELKRKKK---KVSKERTKLQEKM 352
++ EE + L+R K K S+ERT+ + KM
Sbjct: 152 YLKIVKEENKSLQRLAKALQKESEERTQDETKM 184
Score = 31.2 bits (71), Expect = 1.5
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN----LKMLLKGDLG 363
E++ E+KE K +++ ++ +L+ K + E +E+ L+ LK L
Sbjct: 95 ELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKSYLK 154
Query: 364 PTENDDEEMFKL-------SQIRTTDQLDLITASK 391
+ +++ + +L S+ RT D+ +I +
Sbjct: 155 IVKEENKSLQRLAKALQKESEERTQDETKMIEEYR 189
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 32.6 bits (75), Expect = 0.51
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVE--DEMDEEEKELMKATKEIEELKDEERRELKRK 337
E+ E+EKE E+E EE K++E E E E+E +E +E K+ E L+ +
Sbjct: 136 ERIERKEEEKERERE-----EELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQ 190
Query: 338 KKKVSKERTKLQE 350
+++ ER +L E
Sbjct: 191 QEEAEDEREELDE 203
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 32.7 bits (75), Expect = 0.52
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDE-----EEKELMKATKEIEELKDEERRELKRK 337
K E++K +E++ EE + +D M + +E ++ D+ REL
Sbjct: 189 YKAERQKAKEEDEDLREELDDDFKDLMSLLRTVKPPPKPPMTPEEKDDEYDQRVRELTFD 248
Query: 338 KKKVSKERTK------LQEKMNLKML----LKGDLGPTENDDEEMFKLSQIRTTDQLDLI 387
++ +RTK +E LK L L+ G E+D+EE + D LD
Sbjct: 249 RRAQPTDRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEE---DSKESADDLD-- 303
Query: 388 TASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVE 447
+ F D+++ + + E+ +DD + DD DLE E D +D E
Sbjct: 304 -----DEFEPDDDDNFGLGQGEEDEEEEEDGVDDED---EEDDDDDLEEEEEDVDLSDEE 355
Query: 448 KKLVEEEFDTDEED 461
+ +E+ D ++++
Sbjct: 356 EDEEDEDSDDEDDE 369
Score = 28.8 bits (65), Expect = 9.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEE 330
E+ E++ + E + E+E+ ED+ +EEE+E K K+ E E
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 28.8 bits (65), Expect = 9.8
Identities = 15/65 (23%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDE--EEKELMKATKEIEELKDEERRELKRKKK 339
DE+ E++ ++++ + +++ + E+++D EE++ + E+ ++EE E ++KKK
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKK 381
Query: 340 KVSKE 344
K ++
Sbjct: 382 KSAES 386
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 32.5 bits (74), Expect = 0.57
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 260 KDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE--KELM 317
KD+ + V+ + + L E + KEEE EE + E E DEE KEL
Sbjct: 368 KDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELS 427
Query: 318 K-ATKEIEELKDE 329
K + +E+LK E
Sbjct: 428 KEEKELLEKLKME 440
Score = 29.4 bits (66), Expect = 5.4
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEE-EKVVEDEMDEEEKELMKAT--KEIEELKDEERRELKR 336
L + E EK KE + EEE EK VE EEE + + ++EL+ +E L
Sbjct: 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFL-- 423
Query: 337 KKKKVSKERTKLQEKMN 353
K++SKE +L EK+
Sbjct: 424 --KELSKEEKELLEKLK 438
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 32.0 bits (73), Expect = 0.60
Identities = 21/82 (25%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 281 HDEKTEKEKEE--EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELK---DEERRELK 335
+ + KE+ E E E EE + +E E+++ ++ L + K + E + +EE E++
Sbjct: 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155
Query: 336 RKKKKVSKERTKLQEKMNLKML 357
+ +++S +R +L+EK++ ++L
Sbjct: 156 EEGQELSSKREELKEKLDPELL 177
Score = 29.3 bits (66), Expect = 4.2
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 283 EKTEKEKEE-EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
K E+E E +E +EDE+ E LM+ +++E+ ++ + L+R +K +
Sbjct: 85 VKDERELRALNIEIQIAKERINSLEDELAE----LMEEIEKLEKEIEDLKERLERLEKNL 140
Query: 342 SKERTKLQEKM 352
++ +L+E++
Sbjct: 141 AEAEARLEEEV 151
Score = 28.9 bits (65), Expect = 5.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
L +E + EKE E E EK + + E+E+ + +E +EL +R ELK K
Sbjct: 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELS-SKREELKEK 171
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.6 bits (75), Expect = 0.60
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+E ++ EE K+ E ++E ++E ++E+ K E+E E R EL+R ++++
Sbjct: 31 EELAKRIIEEAKKEAETLKKEALLE-----AKEEVHKLRAELERELKERRNELQRLERRL 85
Query: 342 SKERTKLQEKMNL 354
+ L KM
Sbjct: 86 LQREETLDRKMES 98
Score = 30.7 bits (70), Expect = 2.6
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
R +++ L + ++L E+T K E + E E+K E E+ +EK L + +E+EEL
Sbjct: 75 RNELQRLER--RLLQREETLDRKMESLDKKEENLEKK--EKELSNKEKNLDEKEEELEEL 130
Query: 327 KDEERRELKR 336
E+R EL+R
Sbjct: 131 IAEQREELER 140
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 32.7 bits (74), Expect = 0.61
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
D+ K K ++++ E EEE+K+ M ++K+L K K K+E+ LK+KKK++
Sbjct: 522 DKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQI 581
Query: 342 SKER 345
+K++
Sbjct: 582 AKQK 585
Score = 29.3 bits (65), Expect = 7.0
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIE--------ELKDEERREL 334
E+T++ EE+ + + V E D+++ E ++A KE+E E +++
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDV 525
Query: 335 KRKKKKVSKERTKLQEKMNLKMLL 358
+ K K K + +EK +++
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMM 549
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 30.7 bits (70), Expect = 0.62
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEK---ELMKATKEIEELKDE-ERRELKRK 337
D+ KEK + ++ E ++ E +M EEK EL K KE+EEL+ E RRELK +
Sbjct: 14 DKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Query: 338 KKKVSKE 344
KK+ E
Sbjct: 74 AKKMLSE 80
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.0 bits (73), Expect = 0.64
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
E+E +EE E E EEEE V+ + D+ E + ++ E E K+ +R E +KKK+V +
Sbjct: 36 EEEDDEEFEIEEEEEEE-EVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKA 94
Query: 346 TK 347
K
Sbjct: 95 YK 96
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 32.4 bits (73), Expect = 0.67
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
K + + E+++EE + +EE + + EEKE +E E + EL
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNEL 346
Query: 338 KKKVSKERTKLQEKMN 353
+K + ++R +++ N
Sbjct: 347 EKGIEEKRRQMESATN 362
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 30.5 bits (69), Expect = 0.75
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 278 KVLHDEKTEKEKEEEKEG-GEGEEEEKVVEDEM--DEEEKELMKATKEIEELKDEERRE 333
K +EK E+E KEG E EE E+ + EM +E EK L + K + LK + +E
Sbjct: 47 KNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKRKALPALKVRKAKE 105
Score = 28.9 bits (65), Expect = 2.0
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 283 EKTEKEKEEEKEGGEGEEE-EKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKRKK 338
E+ EK + EEK+ E E E VVE+E EEE++ +E E+ E+R+ LK +K
Sbjct: 43 EEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKRKALPALKVRK 102
Query: 339 KKVS 342
K
Sbjct: 103 AKEG 106
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 32.3 bits (74), Expect = 0.76
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 269 DVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD 328
++ L+ + +E + + K+ E E + +E+ + + KEL + EIEEL +
Sbjct: 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL-E 767
Query: 329 EERRELKRKKKKVSKERTKLQEKMN 353
E E + + + E +L+ ++
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIE 792
Score = 32.3 bits (74), Expect = 0.80
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
+E + + E EE ++ E++E +EL +E+E + E RREL+ ++K+
Sbjct: 869 EELESELEALLNERASLEEALALLRSELEELSEEL----RELESKRSELRRELEELREKL 924
Query: 342 SKERTKLQE 350
++ +L+
Sbjct: 925 AQLELRLEG 933
Score = 31.2 bits (71), Expect = 1.6
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 28/113 (24%)
Query: 267 RKDVRNLLKW-----WKVLHDEKTEKEKEEEKEGGEGEEEEK-----------------V 304
+ ++R L + L +E E ++E ++ E EE
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
Query: 305 VEDEMDEEEKELMKATKEIEELK------DEERRELKRKKKKVSKERTKLQEK 351
+E+E++E +KEL EI L+ E L+R+ +++ + +L+ K
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
Score = 31.2 bits (71), Expect = 1.9
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 283 EKTEKEKEEEKEGGEGEEEE-KVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
E E EE +E E E E + + +E E+ L E+EEL EE REL+ K+ ++
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSEL 913
Query: 342 SKERTKLQEKMN 353
+E +L+EK+
Sbjct: 914 RRELEELREKLA 925
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 32.1 bits (73), Expect = 0.78
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+K ++++E++E E E+ + E L K +E EE+ +R +++V
Sbjct: 299 KKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVM 358
Query: 343 KERTKLQE 350
K++T E
Sbjct: 359 KKKTFKDE 366
Score = 29.4 bits (66), Expect = 5.1
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKAT-KEIEELKDEERRELKRKKKKV 341
K +KEK+E E EE E+ E E + T + +E +DE + +R +
Sbjct: 226 TKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEE 285
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTENDDEEMF 373
E + +++ LK ++ E++DEEM
Sbjct: 286 ETEEKEKEKRKRLKKMM-----EDEDEDEEME 312
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 32.4 bits (75), Expect = 0.79
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 302 EKVVE---DEMDEEEKELMKATKEIEELKD----EERRELKRKKKKVSKERTKLQEKMNL 354
EK ++ D++ +EKE K I+ELK+ E++ +K K +++++ KL E M
Sbjct: 540 EKTLKELGDKVPADEKE--KIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQ 597
Query: 355 KMLLKGDLGPTENDDEE 371
+ D++
Sbjct: 598 QAQAAQGAAGAAAKDDD 614
>gnl|CDD|216794 pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain
has no known function. The domain contains three
conserved cysteines at its C terminus.
Length = 162
Score = 31.1 bits (71), Expect = 0.86
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 300 EEEKVVEDEMDEE-EKELMKATKEIEELKDEER-RELKRKKK 339
+E K E E+ EE +EL +A KEIEE+ E+ ++KK
Sbjct: 109 KERKREEVELTEEDREELEEAIKEIEEIISSEKPPPPEKKKY 150
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 31.5 bits (72), Expect = 0.92
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 285 TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKE 344
T KEK E E + E E E E+ E+++ + E +E +E +K+ +K+ E
Sbjct: 200 TAKEKAIEAERAKAEAAEA--EQELLREKQKEEEQMMEAQERSYQE--HVKQLIEKMEAE 255
Query: 345 RTKLQEKMNLKMLLK 359
R KL + + K
Sbjct: 256 REKLLAEQERMLEHK 270
Score = 31.5 bits (72), Expect = 1.0
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKA--------TKEIEELKDEERRELKRK 337
EK E E+ E E E+ + E +EE+++M+A K++ E + ER +L +
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAE 262
Query: 338 KKKVSKERTKLQEKM 352
++++ + + + QE++
Sbjct: 263 QERMLEHKLQEQEEL 277
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 31.3 bits (71), Expect = 0.93
Identities = 13/68 (19%), Positives = 37/68 (54%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
E + ++ +++ E K +E+ ++ E+ + + KE+ EL+ + R E++ ++++
Sbjct: 104 ELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELE 163
Query: 343 KERTKLQE 350
+ + LQ
Sbjct: 164 RLQENLQR 171
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 30.9 bits (70), Expect = 0.94
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMD--EEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
E+E +EE E E E + + E + +A ++ K + R+ +RK K +
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Query: 344 ERTKL 348
T+
Sbjct: 128 GGTQD 132
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 30.3 bits (69), Expect = 0.96
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 285 TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKE 344
TE+ KEE + E +E+ +E E+ + E + KA KEI + ++ +++++ V +E
Sbjct: 14 TERWKEELQA--ELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQ---VEQE 68
Query: 345 RTKLQEKMNL 354
R K E+ N
Sbjct: 69 RAKRLEQKNQ 78
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 31.9 bits (72), Expect = 1.0
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEK 314
DE +++ ++E++ E EEEE+ ++ DE+E+
Sbjct: 157 DEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.9 bits (72), Expect = 1.0
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
D EE+E E E E DE+ +E + E E ++ ++LK+ K K
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGK- 347
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKP 392
K L ++D + S I D + L+TA K
Sbjct: 348 -----------------KNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQ 381
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 29.3 bits (66), Expect = 1.1
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 290 EEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQ 349
+ E E + EEEE+ ED++++ E + E E D R L R+++K +E +
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDE-DEFIDEAEAEDDRRHRRLDRRREKEEEEDAEEL 61
Query: 350 EKM 352
+
Sbjct: 62 AEY 64
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 31.1 bits (71), Expect = 1.2
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
KVL ++ E+ +EEE+E E EE E + E+ A + +E ++E + EL +K
Sbjct: 28 KVLSIKEKERLREEEEEQVEQLREEANDE-AKEIIEEAEEDAFEIVEAAEEEAKEELLKK 86
Query: 338 KKKVSKERTKLQEK 351
+ S KLQ +
Sbjct: 87 TDEASSIIEKLQMQ 100
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 30.6 bits (70), Expect = 1.2
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKRKKKKVSKERTKLQE 350
E +EEE+ +EDE + E+EL + +EIEELKD R E + +K+ +ER + ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKK 57
Score = 30.3 bits (69), Expect = 1.6
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
E+ E+E+E E E EEE + +E+E++E + L++ E E + RE + KK
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKK 57
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 31.5 bits (71), Expect = 1.3
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 294 EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEK 351
E G + E++ E E + EL KA +E E +E ++ K +E +L ++
Sbjct: 89 ELGTAQGEKRAAETEREAARSELQKARQE-REAVRQELAAARQNLAKAQQELARLTKQ 145
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 30.4 bits (69), Expect = 1.4
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK--KVSKER 345
+ +++E E E EE+ +E E E++ + +E E K EE +R+++ K +E
Sbjct: 16 ARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEY 75
Query: 346 TKLQEKMNLK 355
KL+ ++
Sbjct: 76 EKLKSSFVVE 85
Score = 28.1 bits (63), Expect = 8.3
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRE---LKRKKKKVS 342
E+E+ EE++ E + E + E+E EEE+E K +E +E +++ R+E ++ K
Sbjct: 24 EEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFV 83
Query: 343 KERTKLQEKMN 353
E +
Sbjct: 84 VEEEGTDKLSA 94
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 31.5 bits (72), Expect = 1.4
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 283 EKTEKEKEEEKEGGEG-----EEEEKVVEDEMDEEEK-ELMKATKEIEE-LKDEERRELK 335
+K KE+ E + + E+ K D++ EEK ++ KA E++E LK E+ E+K
Sbjct: 517 DKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIK 576
Query: 336 RKKKKVSKERTKLQEKMN 353
K +++ + KL E M
Sbjct: 577 AKTEELQQALQKLAEAMY 594
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 31.4 bits (71), Expect = 1.5
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
E EK+ E E E EEE K+++D++D E +L E E+ E + + R K +S+ +
Sbjct: 121 ELEKKAENEAAEAEEEAKLLKDKLDAESLKL---QNEKEDQLKEAKESISRIKNDLSEMQ 177
Query: 346 TKLQ-EKMNLKML 357
+ Q LK+L
Sbjct: 178 CRAQNADTELKLL 190
>gnl|CDD|227605 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 31.3 bits (71), Expect = 1.6
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 278 KVLHDEKTEKEKE-EEKEGGEGEEEEK-------VVEDEMDEEEKELMKATKEIEE---- 325
+ K + + + + G GEE E+ V E + EL + T + E
Sbjct: 73 NLDDLAKQQAQVDAQFGSGEIGEEAERLFTREIRVTEGGLTGSLSELNEPTVSVREHGKG 132
Query: 326 LKDEERR 332
LKDEE R
Sbjct: 133 LKDEELR 139
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 30.9 bits (70), Expect = 1.7
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKE 344
E+ E+E E E +E E+ D EE+ E + + + K K S
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 30.7 bits (69), Expect = 1.7
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE 325
E+E+ EE +G E EE+E+V D E +EL + +E E
Sbjct: 178 EEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 31.1 bits (71), Expect = 1.7
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 28/116 (24%)
Query: 204 KFEFLQKSKV-CVDLCAAPGGWMQVAKQNMMASSIIHFDDESV--LKHPSTTVEIQECCK 260
+ +FLQ++ +D + KQ +M +I+ +D + T +
Sbjct: 496 REDFLQQNAFDEIDAYCSL------RKQYLMLKAIMEINDYQSKAIDSGVTMDNLAS--- 546
Query: 261 DIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKEL 316
VR L ++ K E + E + + + E E
Sbjct: 547 -------LPVREKL--SRM----KIVPEDQVES---YYSDLLEEIHKEYTNFIGEK 586
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 31.2 bits (70), Expect = 1.8
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 328 DEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLI 387
+EERR +R +K +++ + +EK + LG ++D I +D++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRR--HHSLGTESDED--------IAPAQMVDIV 134
Query: 388 TASKPE--VFADSDEEHIDIVPKKIKYNVEKSELDDSGL---------YYKNPDDSDLEF 436
T PE + +D D++ + + + +++K D L K+P+ D+
Sbjct: 135 TEEMPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPA 194
Query: 437 -ESSSEDENDVEKKLVEEEFDTD---EEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINV 492
E S+ EKK E+E D D E +G LL + S +A+ V E + + V
Sbjct: 195 VEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTV 254
Query: 493 --------RPIRKVVEAKARKKKRQARRMDKMKKKLE 521
K EA+ KK + ++ + K+K E
Sbjct: 255 SGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEE 291
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 31.0 bits (70), Expect = 1.8
Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 19/185 (10%)
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNL-KMLLKGDLGPTE 366
+ E ++ K EE K+E + +K KE K ++ + L G + PT
Sbjct: 368 ILGSFEDDIFKKDHIQEERKNESLE--RFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTL 425
Query: 367 NDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYY 426
D + K + + +D + K ++ + E + + ++ K+
Sbjct: 426 MDQLQEKKSPDLPDEEFIDTLALPK-DLDMKNHELFLKRFANDLGLSISKAIKSKGNYSL 484
Query: 427 KNPDDSDLEFESSSEDEN---------------DVEKKLVEEEFDTDEEDGLGKLLRYWE 471
+ SD E E E+ VE++ E T G RY+
Sbjct: 485 EMDIASDSPDEDEEEFESEVDSIRKIPDKYVNIIVEEEEENETEKTVNLRFPGWKERYYT 544
Query: 472 KSYNA 476
+
Sbjct: 545 SKLHF 549
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate
dehydrogenase proteins. Members of this subfamily have
an LDH-like structure and an MDH enzymatic activity.
Some members, like MJ0490 from Methanococcus jannaschii,
exhibit both MDH and LDH activities. Tetrameric MDHs,
including those from phototrophic bacteria, are more
similar to LDHs than to other MDHs. LDH catalyzes the
last step of glycolysis in which pyruvate is converted
to L-lactate. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate. The
LDH-like MDHs are part of the NAD(P)-binding Rossmann
fold superfamily, which includes a wide variety of
protein families including the NAD(P)-binding domains of
alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 300
Score = 30.5 bits (70), Expect = 1.8
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 302 EKVVEDEMDEEEKELM-KATKEIEELKD 328
EK++E ++ +EEKE K+ + ++EL D
Sbjct: 273 EKIIELDLTDEEKEAFDKSVESVKELID 300
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 31.1 bits (70), Expect = 1.9
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEE-------EKELMKATKEIEELKDEERR 332
L+DE E+ K EE + EE+ K ++ +++E E EL +A + E K+E R
Sbjct: 467 LNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENER 526
Query: 333 ELKRKKKKVSKERTKLQEKMNLKM 356
EL ++ ++ K +L +NL
Sbjct: 527 ELVAQRIEIEKLEKELN-DLNLLS 549
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.9 bits (70), Expect = 2.0
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 289 KEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKL 348
+EEE ++E V+ E++ EE + +E+ + + + KKK K RT
Sbjct: 241 QEEES----IDDELDVL-REIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQK-RTTR 294
Query: 349 QEKMNLKMLLKGDLGPTENDDEE 371
+ KM D D
Sbjct: 295 RVKMRPVRAKPSDEPSLPESDIH 317
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 30.1 bits (68), Expect = 2.0
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 272 NLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEER 331
L +++ +E+E + +++E +E+ EEEKE + + ++ E+
Sbjct: 33 QLFFPSS-----PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKE 87
Query: 332 RELKRKKKKVSKE 344
E ++ + E
Sbjct: 88 DEESEEENEEEDE 100
Score = 28.2 bits (63), Expect = 10.0
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 281 HDEKTEKEKEEEKEGGEG-----EEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
D++ E EE KE + ++E+K ++ DEE +E + E ++E+ E +
Sbjct: 54 SDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE-E 112
Query: 336 RKKKKVSKERTK 347
+ + V KE T
Sbjct: 113 KTESNVEKEITN 124
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
Length = 208
Score = 30.2 bits (67), Expect = 2.1
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 275 KWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEM-----DEEEKELMKATKEIEELKDE 329
KW KV+ E E+E+E+ GG+G +E + + + ++ E +L + ++++E K +
Sbjct: 20 KWEKVM-----EAEEEQEEGGGDGSQEMEPHREGLEFPSREKLEGQLTRMERKVDEYKTQ 74
Query: 330 ERR---ELKRKKKKVSKERTKL 348
R E+ +K++ +E+ +
Sbjct: 75 YLRAQAEMDNLRKRIEREKADI 96
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 30.8 bits (70), Expect = 2.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKEL-MKATKEIEELKDEERRELKRKKKKV 341
E + KE E + E E +K +++ E+EK L IEE E +L+ +KK+
Sbjct: 300 EPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER-KELNSKLEEIQKKL 358
Query: 342 SKERTKL 348
+L
Sbjct: 359 EDLEKRL 365
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.7 bits (70), Expect = 2.1
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 300 EEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKM 352
EE +E +++E +KEL K ++IE+L+ E ++ + +K +K K +K+
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL 140
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 30.9 bits (69), Expect = 2.1
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKE--IEELKDEERRELKRKKKKVSKERTKLQEKMNL 354
E +++ + +++D + +E + KE +++ KD+ +LK KK+ ++K+ K + +
Sbjct: 425 ESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIER 484
Query: 355 KMLLKGDLGPTENDDEE 371
K +L + DDE+
Sbjct: 485 TAASKEELELIKADDED 501
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 30.8 bits (69), Expect = 2.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
L K K++EE E + E E+K E+ E+EKE +E + E RE +R K
Sbjct: 572 LASSKLAKKREEAVEKAKREAEQKAREEREREKEKE--------KEREREREREAERAAK 623
Query: 340 KVS 342
S
Sbjct: 624 ASS 626
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 30.8 bits (70), Expect = 2.2
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
E+ KE + E +EEE ED+ D+ E+ +E + +DE +L
Sbjct: 56 EEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDT-VEEFPKARDEVLEQLN 107
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 30.8 bits (70), Expect = 2.2
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 270 VRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
V+++L + +K++EEE+E E EEEE+ E+ EE L+ E L ++
Sbjct: 330 VQHILPQGRCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPND 389
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 30.0 bits (68), Expect = 2.3
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKR--KKKKVSKER-----TKLQEKMNLKMLLKG 360
E D EE EL + +E+E + ER EL + + +S+E +L +K L +++
Sbjct: 59 ERDLEEAELEREKRELENDPEGEREELAEIYRARGLSEELARQVARELMKKDALDAMMRE 118
Query: 361 DLGPTE 366
+LG
Sbjct: 119 ELGLEP 124
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 30.4 bits (69), Expect = 2.3
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEK 351
+ E+E+ V+D DEEE E + K K + ++ LK K ++ K + + +EK
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 30.7 bits (70), Expect = 2.4
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
LHD+ E GEEEE + E++ ++ + E K E+ K K
Sbjct: 387 LHDKPLLAE---------GEEEEGENG-NLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Query: 340 KVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLD 385
K ++ K KG G T+ D + RT D L+
Sbjct: 437 KKAEAAAKKA---------KGPDGETKKVDPDPLGEKLARTEDPLE 473
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 29.9 bits (68), Expect = 2.5
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
E+ E+ E + EK + DE+DEE E +E+ R L+ ++K
Sbjct: 20 PKEEEEEALELAIQEAHENALEKKLLDELDEELDE------------EEDDRFLEEYRRK 67
Query: 341 VSKERTKLQEK 351
E L EK
Sbjct: 68 RLAEMKALAEK 78
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 30.3 bits (69), Expect = 2.7
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 280 LHDEKTEKEKEEEKEG-GEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKK 338
L DE + + E + +EE ++E + E + + ++ D RE ++
Sbjct: 110 LQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDD--DIATRERSLER 167
Query: 339 KKVSKERTKLQE 350
++ +E + +
Sbjct: 168 RRRRREWEEKRA 179
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 30.5 bits (69), Expect = 2.7
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 281 HDEKTEKE-KEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
E+ KE KE+ E EEEE E E TK+ L D R++L
Sbjct: 303 SAERYVKELKEKLGIAEEYEEEEAKEASEASAAETTPAATTKKGSLLDDSLRQQLVGIFG 362
Query: 340 KVSKERTKLQEK 351
++ T L
Sbjct: 363 RLENPVTLLLFL 374
>gnl|CDD|217554 pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain.
Relaxases/mobilisation proteins are required for the
horizontal transfer of genetic information contained on
plasmids that occurs during bacterial conjugation. The
relaxase, in conjunction with several auxiliary
proteins, forms the relaxation complex or relaxosome.
Relaxases nick duplex DNA in a specific manner by
catalyzing trans-esterification.
Length = 240
Score = 30.0 bits (68), Expect = 2.7
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
DE + + E E G+ E+ + +DE+ + K+ + E+ K LK K
Sbjct: 143 SIDEGNPRNRYTEAEKGKAEKNKTSYKDEIRQALKKAQAHASDFEDFK----EALKEKGL 198
Query: 340 KVSKERTK 347
++ ++ K
Sbjct: 199 EIRRDTGK 206
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 30.1 bits (68), Expect = 2.8
Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 275 KWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERREL 334
K ++ D + + + ++ +D+ ++E L+ +E+E++K E E
Sbjct: 106 KRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALL---RELEKIKKERAEEK 162
Query: 335 KRKKKKVSKERTKLQE 350
+R++++ + E K +E
Sbjct: 163 EREEEEKAAEEEKARE 178
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 30.0 bits (67), Expect = 2.8
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 264 VLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEI 323
+ G + W E+ +++ E+E+ E EE + +E D+ EKE K
Sbjct: 173 IYGDTPLNVREHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLE 232
Query: 324 EELKDEERRELKRKKKKVSKE 344
+ L ++ E +++ S E
Sbjct: 233 KWLGSDQSMETSESEEEESSE 253
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 29.2 bits (66), Expect = 2.8
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 26/82 (31%)
Query: 259 CKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMK 318
KD ++ ++ +R +L +WK K EKE+ E ++ EKE ++
Sbjct: 60 MKDTQLRAKRLMREMLLFWK-----KNEKEERELRK----------------RAEKEALE 98
Query: 319 ATKEIEELKDEERRELKRKKKK 340
K K+EE RE KR+++K
Sbjct: 99 QAK-----KEEELREAKRQQRK 115
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.4 bits (69), Expect = 2.8
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
++ + E +E+KE E EE E E ++++ +L+K +++ ++ ++EE + + K
Sbjct: 439 LKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLK 498
Query: 341 VSKERTKLQEKMNLKMLLKGDLGPTEND 368
+ K +K + K L N
Sbjct: 499 TTSSVGKSAKKQDSKKKSSSKLDKAANK 526
Score = 29.3 bits (66), Expect = 5.8
Identities = 45/270 (16%), Positives = 90/270 (33%), Gaps = 22/270 (8%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
L + + K E K E +E+E +E DE++ E D++ +K
Sbjct: 308 LRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDE-----------DDDDGENPWMLRK 356
Query: 340 KVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSD 399
K+ K + ++ N +L + E +E +L+ S E +
Sbjct: 357 KLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEE----EN 412
Query: 400 EEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDE 459
EE + K+ E E + K + ++ + + S++E ++E + +
Sbjct: 413 EEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVAN 472
Query: 460 EDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVE-------AKARKKKRQARR 512
+ E+ N + K + ++ + KA K +A
Sbjct: 473 KLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAV 532
Query: 513 MDKMKKKLETLMEAPDVSDAEKARNIRAPS 542
K KKK E ++ D E+
Sbjct: 533 KVKKKKKKEKSIDLDDDLIDEEDSIKLDVD 562
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.5 bits (68), Expect = 2.9
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
E E+ +++++G + E++ + + EE T E EE DE E +R++
Sbjct: 590 EGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARK 649
Query: 343 KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDL 386
KE + + G E D + + + + +QL +
Sbjct: 650 KEELRGN-------FELEERGDPEKKDVDWYTEEKRKIEEQLKI 686
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 30.3 bits (68), Expect = 2.9
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
K E+ EE K E+E ++ + +E K +E E+ E+++ + + +K +
Sbjct: 84 KEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA 143
Query: 344 ERTKLQEK 351
E+ K E
Sbjct: 144 EQKKKAEA 151
>gnl|CDD|224581 COG1667, COG1667, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 254
Score = 29.8 bits (67), Expect = 2.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 255 IQECCKDIRVLGRKDVRNLLKWWK---VLHDEKTEKEKEEEKEGGEGEEEEKVVE----- 306
D+ L +L+ K VL TE+E E E E + E E+++E
Sbjct: 86 DSFAVVDVYELDEDLFEKILELNKDECVLSVPITEEEVENEMEELKSSEREELLEKYGIR 145
Query: 307 -DEMDEEEKELMKATKE---IEELKDEERRELKRK 337
E++E E+ L +A EE+++ R EL +K
Sbjct: 146 VPEIEEIERILDEAVGSDYFSEEIEEPSREELLKK 180
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.5 bits (69), Expect = 3.1
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 267 RKDVRNLLKWWKVLH--DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIE 324
+ L +L +E EK K E+ + EE+ + +E E++E +E + K +E
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360
Query: 325 ELKDEERRELKRKKKKVSKE---RTKLQEKMNLKMLLKGDLGPTENDDEEMFK 374
E E L+ +K++ K +L+E + +L + +E +
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE 413
Score = 29.3 bits (66), Expect = 6.7
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE-------ERR 332
H+++ + E E E E E + E E+ EE +EL K +E+EE E +
Sbjct: 470 EHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKE 529
Query: 333 ELKRKKKKVSKERTKLQE 350
EL+ K +K+ +L+E
Sbjct: 530 ELEEKLEKLENLLEELEE 547
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.4 bits (68), Expect = 3.2
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 282 DEKTEKEKEEEK-----EGGEGEEEEKVVEDEMDEEEK---ELMKATKEIEELKDEERRE 333
DE +K++E + + +E+++V E++ E EK E+ K +E + KD + +
Sbjct: 248 DEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFD 307
Query: 334 LKRKKKKVSKERTKLQEKMNLKML-LKGDLGPTENDDE 370
LK++ K KE + + K + DL T+ E
Sbjct: 308 LKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVE 345
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 30.4 bits (68), Expect = 3.4
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 305 VEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGP 364
+E+E+D + + K +E E DEE E + KK+ K+ +GD
Sbjct: 226 LEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEAL-----------EKIGAEGDEEK 274
Query: 365 TENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKK 409
+ D+E F ++ + I E F+ + D +K
Sbjct: 275 FKFDEEIKFIEHDVKDRN----IAGGFSEFFSKLNPFKKDEKIEK 315
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 29.7 bits (67), Expect = 3.4
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 290 EEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQ 349
E E+E E EE + +E++M +KEL + + EL+ E+ ++ + + + + K+ +L+
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELE-EKLKQEEEEAQLLEKKADELE 60
Query: 350 EKM 352
E+
Sbjct: 61 EEN 63
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 29.9 bits (67), Expect = 3.5
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+ E E EE+E EEEE ED+M+ K + K+ +++ ER K K +
Sbjct: 7 LEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEE 66
Query: 343 KERTKLQEKMNLKMLL----KGDLGPTENDDEEMFKLSQIRTTDQLD 385
+R + K ++ K +L + + + + T D+ +
Sbjct: 67 AKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDENE 113
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 30.4 bits (69), Expect = 3.5
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
E+T+ E E E ++E++ +E E + + E+L E + K+ ++
Sbjct: 237 EETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEELFW 296
Query: 343 KER 345
E+
Sbjct: 297 FEK 299
Score = 29.2 bits (66), Expect = 6.4
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 287 KEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERT 346
K+ +E E E EEE V + E K TK+ +E EE L ++K+ +
Sbjct: 224 KKLKETSETEEREEETDV-----EIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Query: 347 KLQEKMNLKMLLKGDL 362
L + LK +L
Sbjct: 279 DLDKLEILKEKKDEEL 294
Score = 28.8 bits (65), Expect = 8.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL--KDEERRELKRKKKKV 341
+TE+ +EE E E K + E + +E E +E K E+ +L+ K+K
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Query: 342 SKE 344
+E
Sbjct: 291 DEE 293
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.4 bits (66), Expect = 3.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 284 KTEKEKEEEKEGGEGEEEEKV-VEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
++ + K+ G E K+ +D+ E+ K L+KA E +K +E K +KKK
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQ-MAERVKKLHSQEKKEEKKKPK 74
Query: 343 KERTKLQ 349
K++ LQ
Sbjct: 75 KKKVPLQ 81
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 29.7 bits (67), Expect = 3.8
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
L D+K E EKE E E+ +K +EE E K +E ELK +K
Sbjct: 69 LSDQKPEDEKELSASSLEAEQAKK-------KEEAEAKKK---------KEMEELKAVQK 112
Query: 340 KVSK--ERTKLQEKMNLKMLLKG 360
K+ + + +L + K+ +G
Sbjct: 113 KIDQYIKEKQLSSSLQTKLTEEG 135
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.9 bits (68), Expect = 3.8
Identities = 11/46 (23%), Positives = 28/46 (60%)
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN 353
E+DEE ++L++ +E++ ++E +E+ R K+ + +L ++
Sbjct: 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVK 78
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.0 bits (65), Expect = 4.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 282 DEKTEKEKEEEKEGGEGEEE--EKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKR 336
K + E E + G EE E E E + E K +EIE LK++ R E
Sbjct: 6 VGKDKAENSEARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDN 65
Query: 337 KKKKVSKER 345
+K+ ++E
Sbjct: 66 FRKRTAREM 74
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 30.2 bits (68), Expect = 4.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 282 DEKTEKEKEEE---KEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD-EERRELKRK 337
DEK E E E ++ +EEE DE EE+ + EE+ + +RR+ +
Sbjct: 393 DEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQ 452
Query: 338 KKKVSKERTKLQEK 351
K++ +E+ E+
Sbjct: 453 KQRFLREKQTAFER 466
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.0 bits (68), Expect = 4.1
Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
++ K V+ ++E + E + +E+ +L+DE ++ + K ++ KE+
Sbjct: 357 VDKAKKVKAAIEELQAEFVDNAEELAKLQDEL-DKIVKTKSELVKEK 402
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 30.2 bits (68), Expect = 4.1
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 286 EKEKEEEKEGGEGEEEE----KVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
E+E+ + E +EEE ++++ + E EE +E K + K
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60
Query: 342 SKERTKLQEKMNLKMLLK 359
K R K +K + + K
Sbjct: 61 EKARLKELKKQKKQEIQK 78
Score = 29.0 bits (65), Expect = 7.6
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATK-EIEELKDEERRELKRKKKK 340
+E+ E + +E EDE +E+++E K EI + + +ELK++KK+
Sbjct: 15 EEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQ 74
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 29.6 bits (66), Expect = 4.2
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 285 TEKEKEEEK--EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
T+KE+EE++ E E EE +VVE+E D++E KE + DE + ++V
Sbjct: 105 TQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEVD 164
Query: 343 KERTKLQEKMN 353
+ L E +N
Sbjct: 165 DDVAILNENIN 175
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs
to the AAA class of chaperone-like ATPases. The core of
the 380 kDa motor unit contains a concatenated chain of
six AAA modules, of which four correspond to the ATP
binding sites with P-loop signatures described
previously, and two are modules in which the P loop has
been lost in evolution. This C-terminal domain carries
the D6 region of the dynein motor where the P-loop has
been lost in evolution but the general structure of a
potential ATP binding site appears to be retained.
Length = 706
Score = 30.0 bits (68), Expect = 4.2
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 289 KEEEKEGGEGEEEEKVVEDEMDEEEKEL-----MKATKEIEELKDEER--------RELK 335
+E GG G E+VV+ + + ++L ++ K + +E + +E++
Sbjct: 423 REAGGSGGSGVSREEVVKQVLRDILEKLPKLFPIEEIK--LKRTEEIKDPLFRVLFQEIE 480
Query: 336 RKKKKVSKERTKLQEKMNLKMLLKGDLGPTEN 367
R K + + R L+E L + LKG+L T +
Sbjct: 481 RMNKLLKEIRRSLKE---LDLGLKGELTMTND 509
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.8 bits (67), Expect = 4.3
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 288 EKEEEKEGGEGEEEEKVVED------EMDEEEKELMKATKEIEELKDE---ERRELK-RK 337
E+ + G EE ++E E++++ + L K KE E+LK E E ELK R+
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 338 KKKVSKERTKLQEKMN 353
+ K + + QE +
Sbjct: 560 RNKKLELEKEAQEALK 575
Score = 29.4 bits (66), Expect = 6.5
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 285 TEKEKEE-EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
EK K+E E+E E +E E+ + E+++E +E +KA K+ E RELK KK +K
Sbjct: 541 QEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESII---RELKEKKIHKAK 597
Query: 344 E 344
E
Sbjct: 598 E 598
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 29.9 bits (67), Expect = 4.4
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE--LKDEERRELKRKKK 339
D E E + + GE+E + + ++ K +KE + L++ + R +KK
Sbjct: 387 DSDIELEDSSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKK 446
Query: 340 KVSKERTKLQE-KMNLKMLLKGDLGPTENDDEE 371
+ +E +++ K K + + G +E DEE
Sbjct: 447 QWREELKRMKMMKKFGKEIGELPDGYSEEVDEE 479
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 29.8 bits (67), Expect = 4.4
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 274 LKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRE 333
L WK+ + E ++E E ++ E+ + E +E ++A + +D RE
Sbjct: 363 LTGWKIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Query: 334 L 334
L
Sbjct: 423 L 423
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 28.8 bits (65), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 294 EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
E E +++E+ E+E DEE+ + E+ +EE E KK K
Sbjct: 110 EEDESDDDEEDEEEEDDEED--------DDEDESEEE--ESPVKKVK 146
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 29.2 bits (66), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN 353
E+ K ++ +++ E+E A K IE+++D++ ++ ++ KV KER K +K+
Sbjct: 82 EKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQLVKVMKERYKSYDKLY 136
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 29.6 bits (67), Expect = 4.7
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 310 DEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKM 352
+EE++++ +A ++EE + E+ E+K K +++ + KL EK
Sbjct: 534 EEEKEKIEEAITDLEEALEGEKEEIKAKIEELQEVTQKLAEKK 576
>gnl|CDD|241143 cd12699, RRM3_hnRNPL, RNA recognition motif 3 in vertebrate
heterogeneous nuclear ribonucleoprotein L (hnRNP-L).
This subgroup corresponds to the RRM3 of hnRNP-L, a
higher eukaryotic specific subunit of human KMT3a (also
known as HYPB or hSet2) complex required for histone H3
Lys-36 trimethylation activity. It plays both, nuclear
and cytoplasmic, roles in mRNA export of intronless
genes, IRES-mediated translation, mRNA stability, and
splicing. hnRNP-L shows significant sequence homology
with polypyrimidine tract-binding protein (PTB or hnRNP
I). Both, hnRNP-L and PTB, are localized in the nucleus
but excluded from the nucleolus. hnRNP-L is an
RNA-binding protein with three RNA recognition motifs
(RRMs), also known as RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 74
Score = 27.3 bits (60), Expect = 4.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 157 DVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCV 215
++ LY N+ KF++ + ++ E+ GY A + LN F F QK VCV
Sbjct: 19 NIFCLYGNVEKVKFMKSKPGAAMV----EMADGYAVDRA--ITHLNNNFMFGQKLNVCV 71
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 29.8 bits (67), Expect = 4.8
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 248 HPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVED 307
PST VE + ++ V L+K K + K EK +E ++E +G + +K
Sbjct: 157 SPSTPVEKLSGWDTLSDSDQEAVLPLVK--KSPSEAKEEKAEERKQESKKGAKRKKDASG 214
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKM 352
+ ++ + + ++ +L+ K + SKE L++ +
Sbjct: 215 DDKSKKAKTDRDVSTSTAASQKKSSDLESKLEAQSKELWSLKDDL 259
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 29.9 bits (68), Expect = 4.8
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEE------EKELMKATKEIEELK---DEERR 332
E+ E G E + +D EKEL K KEI+ ++ E
Sbjct: 783 SPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGF 842
Query: 333 ELKRKKKKVSKERTKLQE 350
K ++ V KE+ KL E
Sbjct: 843 VAKAPEEVVEKEKEKLAE 860
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 29.0 bits (65), Expect = 4.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
K EKEEEKE + + K E +++ EE E K E E E++E + ++ K
Sbjct: 34 KKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93
Query: 344 ERTKLQEK 351
E K
Sbjct: 94 EEEAEDVK 101
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 29.7 bits (67), Expect = 4.9
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE-----LKDEERRELKRK 337
EK E E EG EE + E + +++ + + E ++ + + + +R
Sbjct: 225 EKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRN 284
Query: 338 KKKVSKERTKLQE 350
K+K KE + +
Sbjct: 285 KEKRRKELEREAK 297
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.6 bits (66), Expect = 5.0
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELK-- 335
K E T++++E+ K+ E EE KV E + +E K+ K TK+++E+ E + K
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKK--KKTKKVKEVTKEYEVQNKHK 266
Query: 336 ----RKKKKVSKE 344
R K V+KE
Sbjct: 267 PLWTRDPKDVTKE 279
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 29.3 bits (67), Expect = 5.0
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 302 EKVVEDEMDEEEKELM-KATKEIEELKDE 329
EK++E E+D+EEK K+ + +++L +
Sbjct: 277 EKIIELELDDEEKAAFDKSVEAVKKLIEA 305
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 28.8 bits (65), Expect = 5.1
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 278 KVLHDEKTEKEKEE--EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR 332
+ + +E E E EE E E E EE+ + +DEE+ ++ + +++EL++ R
Sbjct: 6 EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLR 62
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 27.9 bits (63), Expect = 5.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 319 ATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN 353
A KEIEE + + E K + + S R +L++K+
Sbjct: 38 AEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIE 72
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 28.3 bits (64), Expect = 5.2
Identities = 16/65 (24%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEI--------EELKDEERRELKRKKKKVSKERTKLQE 350
E+E K + E+++ EKEL K +++ E ++++ +EL++K ++ +++ KLQ+
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
Query: 351 KMNLK 355
+ +
Sbjct: 84 DLQKR 88
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 27.8 bits (62), Expect = 5.2
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE----ERRELKRKKKKV 341
EK E+ E + EK ++DE + E + ++A KE K+E E+ K KKV
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKV 90
Query: 342 SKERTKLQEKMNLKML 357
ER K +EK N K+L
Sbjct: 91 --ERLKRREKRN-KLL 103
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 29.4 bits (66), Expect = 5.3
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKE---------IEELKD 328
K EK+ + E + E +K E E KE M+A K +EL D
Sbjct: 541 NEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDD 600
Query: 329 EERRELKRKKKKVSKERTKLQEKMNLKM 356
+ + ++++ KK++ E + + M L++
Sbjct: 601 DLKEKVEKMKKEIELELAGVLKSMGLEV 628
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 29.5 bits (66), Expect = 5.3
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 282 DEKTEKEKEEEKEG-GEGEE-----EEKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
D+ TE E+EE+ EG GEG+E E + + E + E+E++++ ++ + ++ E
Sbjct: 218 DQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETP 277
Query: 336 RKKKKVSKERTKLQEKMNLKML 357
+ + ++ T + + K+
Sbjct: 278 GEGARPARPFTSTGGEPDYKVF 299
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 29.5 bits (67), Expect = 5.4
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 277 WKVLHDEKTEKEKE----EEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR 332
+ + ++ + E++ EE + E EEEE+ V+D + + EL I + +++
Sbjct: 321 YLLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELGYGLIPLVDEQQGG 380
Query: 333 ELKRKKKKVSKE 344
EL + + + K+
Sbjct: 381 ELLDRIRGIRKK 392
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 29.0 bits (65), Expect = 5.5
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVE-DEMDEEEKELMKATKEIEE 325
++ E+E EE +E E E EE+ E + + + +EL +A++++EE
Sbjct: 77 EDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEE 121
>gnl|CDD|153240 cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E. Type 1
glutamine amidotransferase (GATase1)-like domain found
in peptidase E. This group contains proteins similar to
the aspartyl dipeptidases Salmonella typhimurium
peptidase E and Xenopus laevis peptidase E. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Peptidase E is believed to be a serine peptidase having
a Ser-His-Glu catalytic triad which differs from the
Cys-His-Glu catalytic triad typical of GATase1 domains
by having a Ser in place of the reactive Cys at the
nucleophile elbow. Xenopus PepE is developmentally
regulated in response to thyroid hormone and, it is
thought to play a role in apoptosis during tail
reabsorption.
Length = 212
Score = 28.8 bits (65), Expect = 5.6
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 230 QNMMASSIIHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKV 279
+ + S + FD E L + E D+ +G + NLL W+
Sbjct: 59 RGVEVSHLHLFDTEDPLDA------LLEA--DVIYVGGGNTFNLLAQWRE 100
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 29.5 bits (66), Expect = 5.6
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
+ + K++ KE G ++E +E E E E + T + E K + + KKK
Sbjct: 792 KAAARAKQKPKEKGP-NDKEIKIESPSVETEGE--RCTIKQREEKGIDAPAILNVKKK 846
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 29.3 bits (66), Expect = 5.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 314 KELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNL 354
+ L A +++EEL+ E L R K + + E NL
Sbjct: 489 ERLETAERKLEELEAEWEAILFRHGWKPTMVGLEACEMRNL 529
>gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS
family.
Length = 308
Score = 29.2 bits (66), Expect = 5.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 299 EEEEKVVEDEMDEEEKELMK----ATKEIEELKDEERRELKRKKKKV 341
+ +++D D E EL + +E+EEL +ER EL K+
Sbjct: 136 VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKL 182
>gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional.
Length = 659
Score = 29.4 bits (66), Expect = 5.8
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 465 KLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLETLM 524
+ + EK+Y ASL++E+RKK I P + V+ K ++K +K+++ L+
Sbjct: 372 NFMEWAEKNYLNASLLDEFRKKVKNITKSP-EEFVKELKDKAMVSDEELEKYRKEIKDLL 430
>gnl|CDD|214591 smart00264, BAG, BAG domains, present in regulator of Hsp70
proteins. BAG domains, present in Bcl-2-associated
athanogene 1 and silencer of death domains.
Length = 79
Score = 27.3 bits (61), Expect = 5.8
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 273 LLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR 332
+ K +VL + + + EKE + G+ +++E + E LMK +++ + E
Sbjct: 2 IKKINEVLDEVQKKIEKEVQVADGKKDDKEYLRLSEE------LMKLLLKLDSVDVEGCE 55
Query: 333 ELKRKKKKVSKERTKLQEKMNLK 355
+++ +K++ + L ++ K
Sbjct: 56 DIREARKRLVRLIQNLLNALDSK 78
>gnl|CDD|218657 pfam05615, THOC7, Tho complex subunit 7. The Tho complex is
involved in transcription elongation and mRNA export
from the nucleus.
Length = 132
Score = 28.0 bits (63), Expect = 5.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEIEELKDE--ERRELKRKKKKVSKERTKLQEKM 352
E E + E E +E E + A EIEELK E E + +++ +K+ + K+
Sbjct: 66 ERERENYEQEKEEIETTIENAKDEIEELKKELEEAKRIRKNRKEYDELAKKITSLP 121
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and
conversion].
Length = 313
Score = 29.1 bits (66), Expect = 5.9
Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 295 GGEGEEEEKVVEDEMDEEEKELM-KATKEIEELKDE 329
G G EE ++E + ++E+E + K+ +E+++ +
Sbjct: 273 GKNGVEE--ILELLLSDDEQEKLDKSAEELKKNIEL 306
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 29.3 bits (66), Expect = 6.0
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGE-----EEEKVVEDEMDEEEKELMKATKEIEELKDEERR 332
VL E EEE + +E+K E + E+K+ K K+ + + E +
Sbjct: 32 LVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKL 91
Query: 333 ELKRKKKKVSK 343
K KK
Sbjct: 92 GFKTPKKSKKT 102
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 29.3 bits (66), Expect = 6.1
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
++ K +K++ ++K + ++ K D+ D L + E +E ++++ + K+KKKK
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDA---FLAELISENQEAENKQNNKKKKKKKK 64
Query: 341 VSKERTKLQEK 351
K++ +
Sbjct: 65 KKKKKNLGEAY 75
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.2 bits (66), Expect = 6.2
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 21/101 (20%)
Query: 273 LLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVED---------------------EMDE 311
LL+ WK +K E E+ E + + EEEE VE+ E
Sbjct: 74 LLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSE 133
Query: 312 EEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKM 352
+E+E +A K+ +E DEE E ++ +E +EK
Sbjct: 134 DEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 29.2 bits (65), Expect = 6.5
Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 33/260 (12%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELK--DEERRELKRKKK 339
DE+ E+E E ++ +E+E + +E + ++L E +E K +EE +++
Sbjct: 117 DEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESV 176
Query: 340 KVSKERTKLQ-----------EKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQL--DL 386
+ + K ++MN + DE+ F+ ++ D
Sbjct: 177 EQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDE 236
Query: 387 ITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDV 446
S + D+E +I + EK + D+G D E E D+ V
Sbjct: 237 DFGSGEDE---EDDEEGNIEYEDFFDPKEKDKKKDAG--------DDAELEDDEPDKEAV 285
Query: 447 EKKLVEEEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKK 506
+K+ + + DEED ++ E +V+++ + V ++
Sbjct: 286 KKEADSKPEEEDEED-------DEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Query: 507 KRQARRMDKMKKKLETLMEA 526
+R K+K+++E L +
Sbjct: 339 SSFEKRQAKLKQQIEQLEKE 358
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 29.3 bits (66), Expect = 6.6
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+E+ + E E E +++++DE E + + EI+ L + +++ + V
Sbjct: 255 PAEMDTEEDRTKEREAELEA--LQEQIDELESSIEEVLSEIKALAS-KIKQVNEELTTVR 311
Query: 343 KERTKLQEKMNLK 355
+E +L+E+ +K
Sbjct: 312 QENEELEEEYKIK 324
>gnl|CDD|227440 COG5109, COG5109, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 396
Score = 29.2 bits (65), Expect = 6.6
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 12/177 (6%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
EE + + V+ ++ +++ L K E DE R L K +
Sbjct: 5 TDSNLEETNLQKCLDHTHEVDSKLKIDKRRLRK---ETMRSIDEIRSALSLKNGQEFDTL 61
Query: 346 TKLQEKMN--LKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHI 403
+ + + K LLK D P D + ++ +T + + +D
Sbjct: 62 SHAEADLVGSWKSLLKEDCRPANFDVQVGNQIYPF-STQTVTYLVVYYLLENNCADVVER 120
Query: 404 DIVPKKIKYNVEKSELDDSGLYYKN-----PDDSDLEFESSSEDENDVEKKLVEEEF 455
I K E ++ D + K + S + E + K E E
Sbjct: 121 HISETKDG-KDEIIKIRDGFVKLKKVISGISEKSTFLLIEFLQIEGYLSKGDTESEL 176
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 28.7 bits (65), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 519 KLETLMEAPDVSDAEKARNI 538
+L LM+ DVS AEK R +
Sbjct: 136 RLRDLMDRADVSLAEKFRRV 155
>gnl|CDD|202114 pfam02114, Phosducin, Phosducin.
Length = 245
Score = 28.9 bits (64), Expect = 6.8
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 325 ELKDEERRELKRKKKKVSKERTK----LQEKMNLKMLLKGDLGPTEN-DDEEMFKLSQIR 379
E D K +++S +++ +E+ + KM ++ ++ +DE + + +
Sbjct: 37 EDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCLRKYRRQ 96
Query: 380 TTDQL 384
+
Sbjct: 97 CMQDM 101
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 29.3 bits (66), Expect = 6.9
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
+ E +EEKE E E E + + E L K IEE D ++K++K K
Sbjct: 1519 EIENRNQEEKEPAGQGELESDKEKKGNLESV-LSNQEKNIEE--DYAESDIKKRKN---K 1572
Query: 344 ERTKLQEKMNLKMLLK 359
++ K + L LK
Sbjct: 1573 KQYKSNTEAELDFFLK 1588
Score = 28.9 bits (65), Expect = 8.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 261 DIRVLGRKDVRNLL--KWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDE 308
DI L +K RN + D EK K+++K+ + EEE K E
Sbjct: 716 DISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 28.9 bits (65), Expect = 6.9
Identities = 11/59 (18%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLK 355
E + ++++ K K+ + K + +ELK +K++ K+ K+++++ L+
Sbjct: 150 LDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKER-EKKLKKVEQRLELQ 207
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 29.1 bits (66), Expect = 7.0
Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 279 VLHDEKTEKE--KEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKR 336
+LH + E K++ + + + + + + +E L E+EE + E +L++
Sbjct: 143 LLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQ 202
Query: 337 KKKKVSKERTKLQEK 351
++K ++ + ++K
Sbjct: 203 LQEKAAETSQERKQK 217
>gnl|CDD|147001 pfam04629, ICA69, Islet cell autoantigen ICA69, C-terminal domain.
This family includes a 69 kD protein which has been
identified as an islet cell autoantigen in type I
diabetes mellitus. Its precise function is unknown.
Length = 237
Score = 28.8 bits (64), Expect = 7.1
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 282 DEKTEKEKEEEKEGGE-GEEEEKVV--EDEMDEEEKELMKATKEIEELKDEERRELKRKK 338
+ TEK+KEE+ EG + + K + +E +E + K + +L ++
Sbjct: 15 KKLTEKKKEEQTEGSDLAAQLNKQLISLEEEKQERESASKTEEGHSQLSSFDKGSFHNSC 74
Query: 339 KKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLD 385
+ + E+ L + L P + D +E L++I + L+
Sbjct: 75 GAIDELLDLKPEEACLGPVPGDPLEPEDGDKDEFSLLNEILSASSLE 121
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 28.5 bits (64), Expect = 7.1
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
+E E+++++E E + +DE + E+E + T++ EE+ E E R+ +K
Sbjct: 13 DEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFEK 72
Query: 341 VSKE 344
+ E
Sbjct: 73 MMAE 76
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.1 bits (65), Expect = 7.1
Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 16/229 (6%)
Query: 305 VEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGP 364
+E+++ EL K+I + + ++ +++S E M+ LK L
Sbjct: 188 LEEKLKSSNLELENIKKQIADDEKSH-SITLKEIERLSIE---YNNAMDDYNNLKSALNE 243
Query: 365 TENDDEEMFKL-SQIRTTDQLDLITASKPEVFADSDEEHIDIVPKK--------IKYNVE 415
+ ++ + S+I+T + + K + + +E H+ I+ Y
Sbjct: 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKY 303
Query: 416 KSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEEDGLGKL---LRYWEK 472
K+++++ N D ++ + + + ++K + D L L +E
Sbjct: 304 KNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEM 363
Query: 473 SYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKRQARRMDKMKKKLE 521
YN+ E KK++E + I ++ + K Q D +KK+L
Sbjct: 364 DYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELN 412
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.0 bits (65), Expect = 7.2
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+K E+++ EE + + E+E++ + EKE + A +E ++ +E ++ K+K+
Sbjct: 82 KKKEQQQAEELQQKQAAEQERLKQL-----EKERLAA-QEQKKQAEEAAKQAALKQKQAE 135
Query: 343 KERTKLQEKMNLK 355
+ K K
Sbjct: 136 EAAAKAAAAAKAK 148
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 28.7 bits (64), Expect = 7.2
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 285 TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
E E E E EGGE EEEE D E E T++ EL DEE R L ++++
Sbjct: 63 EETEAEVEDEGGEEEEEE----DADVETELRPRGLTEKTPELSDEEARLLTQRRR 113
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.1 bits (65), Expect = 7.3
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMD-EEEKELMKATKEIEELKDEERRELKRKKKKV 341
EK +E EK E E E+ E++ EEEK M+A + + + E++++++K+
Sbjct: 253 EKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADR------AQAKAEVEKRREKL 303
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 29.2 bits (66), Expect = 7.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 306 EDEMDEEEKELMKATKEIEE-LKDEERR------ELKRKKKKVSKER-TKLQE 350
E+++++E KEL K ++E+ L EER EL KKK ER T++ E
Sbjct: 436 EEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDERRTEIVE 488
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 28.9 bits (65), Expect = 7.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQE 350
G+ EE VV EEE EL+KA E E K +++++ K+ KK + +
Sbjct: 151 GKPYSEEDVVPLNPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEAT 205
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 7.4
Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
E E+E E++ E E K E ++ ++EL + ++++E +D+ E +++ ++ KE
Sbjct: 527 ELERELEQKAEEAEALLK----EAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582
Query: 346 TKLQEKMNLKMLLKGDLGPTENDDEEM 372
K +++ ++ G E+
Sbjct: 583 KKEADEIIKELRQLQKGGYASVKAHEL 609
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 29.2 bits (65), Expect = 7.4
Identities = 30/151 (19%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 278 KVLHDEKTE-KEKEEEKEGGEGEEEEKV-VEDEMDEEEKELMKATKEIEELKDEERRELK 335
+V + + +E + E + + +E+ + D++ +E +L ++++EI + + E LK
Sbjct: 193 QVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQL-ESSREIVKSYENELDPLK 251
Query: 336 RKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIR------TTDQLDLITA 389
+ K++ +K+ + N LK E D+ E L T +QL+ +
Sbjct: 252 NRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSE---LELKMEKVFQGTDEQLNDLYH 308
Query: 390 SKPEVFADSDEEHIDIVPKKIKYNVEKSELD 420
+ + + E +D + K N E+ L+
Sbjct: 309 NHQRTVREKERELVDCQRELEKLNKERRLLN 339
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 28.5 bits (64), Expect = 7.6
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE-------KELMKATKEIEELKDEERREL 334
D + E + + + E E++EEE KE+ K KE ++ K++
Sbjct: 122 DGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Query: 335 KRKKKKVSKERT 346
KKKK K++
Sbjct: 182 GSKKKKKKKKKK 193
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 28.3 bits (63), Expect = 7.8
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR---EL 334
K L E+T E +++ +EE++ ++ +++ EKE+ + ++L+D+ R E+
Sbjct: 10 KDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEI 69
Query: 335 KRKKKKVSKERTKL 348
+ + + +KER +L
Sbjct: 70 QNMQNRYAKERAQL 83
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 28.7 bits (65), Expect = 7.9
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 266 GRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE 325
G+ +V NL + + ++ + E E E GGE E K+ + A E
Sbjct: 238 GKPEVCNLFEIYSAFFEDDSILEIEAEYRGGE----------LGCGECKKEL-AEAIQEF 286
Query: 326 LKD--EERRELKRKKKKVSKERTKLQEK 351
LK E R EL+ + K EK
Sbjct: 287 LKPIQERREELREDPAYLDDILRKGAEK 314
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 28.9 bits (65), Expect = 7.9
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 261 DIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKE 315
+ V+G + ++L + E+E+++ E + +EE++ E+E D++E +
Sbjct: 268 EPEVVGGDEEDLE----ELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 29.0 bits (65), Expect = 8.2
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 280 LHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD----EERRELK 335
L DE+ EK +E +E E +E++K + D +E E + K++ +LKD ++ EL
Sbjct: 541 LSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDEL- 599
Query: 336 RKKKKVSKERTKLQE 350
K+K++K R+ L
Sbjct: 600 --KQKITKLRSTLSS 612
>gnl|CDD|133393 cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of
putative MlrA-like transcription regulators. Putative
helix-turn-helix (HTH) MlrA-like transcription
regulators (subgroup 2), N-terminal domain. The MlrA
protein, also known as YehV, has been shown to control
cell-cell aggregation by co-regulating the expression of
curli and extracellular matrix production in Escherichia
coli and Salmonella typhimurium. These proteins belong
to the MerR superfamily of transcription regulators that
promote expression of several stress regulon genes by
reconfiguring the spacer between the -35 and -10
promoter elements. Their conserved N-terminal domains
contain predicted HTH motifs that mediate DNA binding,
while the dissimilar C-terminal domains bind specific
coactivator molecules.
Length = 99
Score = 27.2 bits (61), Expect = 8.3
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 267 RKDVRNLLKWWKVLHDEK--TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIE 324
KDV LL +L+++ E K+ KE G E+ E+ + E+
Sbjct: 41 PKDVELLLLIKHLLYEKGYTIEGAKQALKEDGAAAIREEEAEERLPS-------IRAELL 93
Query: 325 ELKDEE 330
+L+D+
Sbjct: 94 DLRDQL 99
>gnl|CDD|219330 pfam07201, HrpJ, HrpJ-like domain. This family represents a
conserved region approximately 200 residues long within
a number of bacterial hypersensitivity response
secretion protein HrpJ and similar proteins. HrpJ forms
part of a type III secretion system through which, in
phytopathogenic bacterial species, virulence factors are
thought to be delivered to plant cells. This family also
includes the InvE invasion protein from Salmonella. This
protein is involved in host parasite interactions and
mutations in the InvE gene render Salmonella typhimurium
non-invasive. InvE S. typhimurium mutants fail to elicit
a rapid Ca2+ increase in cultured cells, an important
event in the infection procedure and internalisation of
S. typhimurium into epithelial cells. This family
includes bacterial SepL and SsaL proteins. SepL plays an
essential role in the infection process of
enterohemorrhagic Escherichia coli and is thought to be
responsible for the secretion of EspA, EspD, and EspB.
SsaL of Salmonella typhimurium is thought to be a
component of the type III secretion system.
Length = 161
Score = 28.1 bits (63), Expect = 8.3
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
++ E EK + E+V++ E +E+ +EL + K + L+
Sbjct: 12 RKRSDRRKSESEKLEELSDLLERVLDLEAEEKLRELRQLLKSGRSSLPQLLAYLESL 68
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.9 bits (66), Expect = 8.4
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 315 ELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDL-------GPTEN 367
+ + ++ E L E +ELK + K + E +L+ ++ +L +L G E+
Sbjct: 60 QAKRKGEDAEALI-AEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDED 118
Query: 368 DDEEMFKLSQIRTTD 382
D+ E+ + + R D
Sbjct: 119 DNVEVRRWGEPREFD 133
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 28.2 bits (62), Expect = 8.7
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
DE E+EK +++ E++ + + +E++++ +E + +E EE K +E + ++ K
Sbjct: 19 DELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKS 78
Query: 342 SKER 345
E+
Sbjct: 79 FDEK 82
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 28.7 bits (64), Expect = 8.8
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 278 KVLHDEKTEKEKEEEK-------EGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEE 330
K L +EK K++EEE EE + ++ + E E+ K ++ +LK+EE
Sbjct: 497 KQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDL-KLKEEE 555
Query: 331 RRELKRKKKKVSKER 345
R L+++ +++ K +
Sbjct: 556 CRMLEKEAQELRKYQ 570
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 28.9 bits (65), Expect = 8.8
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 245 VLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKE------KEEEKEGGEG 298
+ EI+E +D K ++ + +K +K + + EG
Sbjct: 164 ACRGYIRQAEIEEPLEDP-----KKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEG 218
Query: 299 EEEEKV--VEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK 347
E E + V ++E ++ L + +E++ + EL ++VSKE+
Sbjct: 219 ERSELISKVNKRIEELQRVLEQTESHLEKVLVKIADELLAWDEQVSKEKAV 269
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 28.9 bits (65), Expect = 8.8
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 279 VLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKK 338
LH E E+ +E E +E + + ++ E +L +E +DE +EL
Sbjct: 267 HLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQL-------KEARDELNQELSAAN 319
Query: 339 KKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADS 398
K++ +R++L+ LL+ G E+ D E + DQL I + EV A
Sbjct: 320 AKLAADRSELE-------LLEDQKGAFEDADIEQLQADL----DQLPSIRSELEEVEARL 368
Query: 399 D 399
D
Sbjct: 369 D 369
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 27.7 bits (62), Expect = 9.0
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 13/79 (16%)
Query: 283 EKTEKEKEEEKEGGEG----EEEEKVVEDEMDEEEKELMKATKEIE---ELKDEERRE-- 333
E+ E+++E+EKE G+G EE EK +E+ + K L + + + ELK++ER +
Sbjct: 26 EEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEELKEQERWDDP 85
Query: 334 ----LKRKKKKVSKERTKL 348
L++KK+K K+ L
Sbjct: 86 MAQFLRKKKEKTDKKGKPL 104
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 28.0 bits (63), Expect = 9.0
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEIEE----LKDEER----RELKRKKKKVSKERTKLQE 350
E+E K ++ E+ ++EKEL K +++++ L +E R +EL++K++++ +++ Q+
Sbjct: 41 EKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQ 100
Query: 351 KMNLK 355
++ K
Sbjct: 101 ELQQK 105
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 28.2 bits (63), Expect = 9.1
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE--ERRELKRKKKKV 341
K EKE+ E E + E+ E++ + + E ++ + +LK + +
Sbjct: 71 KKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLKLATENI 130
Query: 342 SKERTKLQEKMN 353
K+ K+ +++
Sbjct: 131 IKDLKKINSRVS 142
>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI
4). This family contains several phospholipase-like
proteins from Arabidopsis thaliana which are homologous
to PEARLI 4.
Length = 234
Score = 28.3 bits (63), Expect = 9.2
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 292 EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEE--LKDEERR----ELKRKKKKVSKER 345
EKE E + K + EM+++E EL++ KE++E K EE EL+ K+ ++ K
Sbjct: 159 EKERHERDVLLK--KQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGELEMKRLRLEKRL 216
Query: 346 TKLQEKM 352
L K+
Sbjct: 217 DFLGSKV 223
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.3 bits (63), Expect = 9.3
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 286 EKEKEEEKEGGEGEEEEKV-VEDEMDEEEKELMKATKEIEELKDEERR---ELKRKKKKV 341
+++ EE KE E ++EK + E++E E E + + ++ L+ E R LK+ +V
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193
Query: 342 SKERTKLQE 350
+ + E
Sbjct: 194 YDLKKRWDE 202
>gnl|CDD|224384 COG1467, PRI1, Eukaryotic-type DNA primase, catalytic (small)
subunit [DNA replication, recombination, and repair].
Length = 341
Score = 28.5 bits (64), Expect = 9.4
Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 6/134 (4%)
Query: 321 KEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDL----GPTENDDEEMFKLS 376
+E+ L EERRE+ E + LK LL L G +L
Sbjct: 160 EEVLSLGSEERREILDYVSGNRLELETVFRLRPLKRLLGRVLGWGKGLFIKLRLREARLM 219
Query: 377 QIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEF 436
+ D + + + DE+ + + + I+ + S L +L
Sbjct: 220 KRVKEDIENALARLPDKRLIAIDEKVTNDITRLIR--LPGSLDGKGFLTVARLGLDELRV 277
Query: 437 ESSSEDENDVEKKL 450
S + +V K L
Sbjct: 278 FSPLYLDGEVTKDL 291
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 27.1 bits (60), Expect = 9.5
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 284 KTEKEKEEEKEGGEGEEE---EKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
K EKE EE E + E + K E+ EE+ + KA +E ++L +++++E + + KK
Sbjct: 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKK 69
Query: 341 VSKERTKLQEKMNLK 355
+ +E K E++ +K
Sbjct: 70 ILEEGEKEIEELKVK 84
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.5 bits (64), Expect = 9.6
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 308 EMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKG 360
E+++ + A+K + +E+RE + KV K +E L+MLLK
Sbjct: 325 ELEDLKSPSGVASKAKLKKSWKEKREDR----KVEKGAGVEEELRTLEMLLKK 373
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.5 bits (64), Expect = 9.7
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEI--EELKDEERR---ELKRK- 337
++++ E++ E E E++ + + +E+ ++ ++ E ++LK+E EL+R+
Sbjct: 214 ESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREF 273
Query: 338 ----KKKVSKERTKLQEKMN 353
K+KV +ER K+
Sbjct: 274 NKEIKEKVEEERNGRLAKLA 293
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 28.4 bits (63), Expect = 9.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
K KE EEE E ++EE +D+ ++E+ + ++ E+ D+
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 28.2 bits (63), Expect = 9.8
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
K E G + E V ++E + +E + ++ K EE R +RKK++ +
Sbjct: 155 KEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEE 214
Query: 344 ERTKLQEK 351
ER + E+
Sbjct: 215 ERKQKAEE 222
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 27.9 bits (62), Expect = 10.0
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 281 HDEKTEKEK-EEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKR 336
E+ + E+ EEE E E EE + V +E E+ EL A + +E +++ R E++
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEE-TPEKSELELANERADEFENKYLRAHAEMQN 59
Query: 337 KKKKVSKERTKLQ 349
+++ ++ER +LQ
Sbjct: 60 IQRRANEERQQLQ 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.373
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,839,024
Number of extensions: 2807740
Number of successful extensions: 9887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7147
Number of HSP's successfully gapped: 1090
Length of query: 547
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 445
Effective length of database: 6,413,494
Effective search space: 2854004830
Effective search space used: 2854004830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.4 bits)