RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3133
(547 letters)
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 164 bits (418), Expect = 4e-48
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
D+T + I L + DV+L D +PN D L L L + IL+ G
Sbjct: 79 DVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG 138
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFF 122
G F+ K + L + FQ V KP+ASRKES+E++ + Y K
Sbjct: 139 GTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR-----KGT 193
Query: 123 DPK 125
+
Sbjct: 194 VKQ 196
Score = 89.9 bits (224), Expect = 5e-21
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNM 232
YRSR+AFKL+++N + + L+ +D AAPG W QVA Q +
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKV 44
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 164 bits (418), Expect = 4e-48
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 3 DITTDKCRIAITRELK---TWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGIL 59
DI + I R L+ KVD V+ D V D + +++A L
Sbjct: 70 DIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYL 129
Query: 60 KEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAKLDT 119
+ GG + K F+ + I+++ F +KP ASR S+EI+++ + A
Sbjct: 130 RNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKAEGHHHH 189
Query: 120 K 120
Sbjct: 190 H 190
Score = 91.4 bits (228), Expect = 2e-21
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNM 232
RSRAAFKL L ++ ++K +++ ++PGGW QV
Sbjct: 4 QLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA 47
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 161 bits (411), Expect = 3e-47
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
D + A+ + KV VV+ D +PN+ D L AL++ +L G
Sbjct: 70 DFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG 129
Query: 63 GWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
G FV KVF+ + + L + LF +V KP +SR S E+++V
Sbjct: 130 GSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGR 178
Score = 96.0 bits (240), Expect = 3e-23
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSII 238
G RSRA FKL ++ + + + VDL AAPGGW Q + I
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRI 50
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 154 bits (392), Expect = 2e-44
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKE 61
+++ + + L+ K+D++L D + N + D + C LTL +
Sbjct: 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI 146
Query: 62 GGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHYIAPAK 116
GG ++ K++ +L K +FQ VH+TKP+ASR ES EI++VC++++ K
Sbjct: 147 GGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLGRKK 201
Score = 89.2 bits (222), Expect = 1e-20
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASS 236
YRSRAA+KLI+L+ K+ FL+K+K+ +D+ PG W QV +
Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYK 48
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 100 bits (251), Expect = 6e-24
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
+I T K + I L+ K D +L D + + + T+ L L G
Sbjct: 123 NIITFKDKTDI-HRLEPVKCDTLLCDIGESSS-----SSVTEGERTVRVLDTVEKWLACG 176
Query: 63 -GWFVTKVFR--SKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
F KV D L + ++ F P SR + E++ V
Sbjct: 177 VDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGAR 227
Score = 67.3 bits (164), Expect = 1e-12
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 187 GKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSI 237
SR KL + + + +V +DL GGW A S +
Sbjct: 52 TGVAVSRGTAKLRWFHERGYVKLEGRV-IDLGCGRGGWCYYAAAQKEVSGV 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 72/505 (14%), Positives = 146/505 (28%), Gaps = 113/505 (22%)
Query: 107 VCQHYIAPAKLDTKFFDPKYAFKELGAEDGKLNALKKKQVEKSKALGYPSDVNVLYKNLP 166
+ + + FD K +D + L K++++ + V+ +
Sbjct: 21 ILSVFEDAFVDN---FDCKDV------QDMPKSILSKEEIDH--IIMSKDAVSGTLRLF- 68
Query: 167 VSKFIEHETPTVLLQHATEVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQ 226
LL K F L ++FL S + + P +
Sbjct: 69 ----------WTLLS------KQEEMVQKFVEEVLRINYKFL-MSPIKTE-QRQPSMMTR 110
Query: 227 --VAKQNMMASSIIHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLL--------KW 276
+ +++ + + F +V + +++++ ++R +N+L K
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELR-----PAKNVLIDGVLGSGKT 164
Query: 277 W---KVLHDEKTEKEKEEEKEG------GEGEEEEKVVE---------DEMDEEEKELMK 318
W V K + + + E V+E D +
Sbjct: 165 WVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 319 ATK-EIEELKDEERRELKRKKKK--------VSKERTKLQEKMNL--KMLL----KG--- 360
K I ++ E RR LK K + V K NL K+LL K
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 361 DLGPTENDDEEMFKLSQIRTTDQ--------LDLITASKPEVFADSDEEHIDIVPKKIKY 412
L + S T D+ LD P ++ + I+ + I+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 413 NVEKSELDDSGLYYKNPDDSDLE--FESSSEDENDVEKKLVEEEF-----DTDEEDGLGK 465
+ + +K+ + L ESS E + + + L
Sbjct: 340 GLATWD------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-- 391
Query: 466 LLRYWE--KSYNAASLVNEYRKKR-VEINVRPIRKVVEAKARKKKRQARRMDKMKKKLET 522
L W + +VN+ K VE + + + + K + + + +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 523 LMEAPDVSDAEKARNIRAPSFLYYY 547
P D++ + Y +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH 476
Score = 49.1 bits (116), Expect = 4e-06
Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 373 FKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDD- 431
F+ + + + D+++ + + D + + +PK I + K E+D + D
Sbjct: 9 FETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEIDH---IIMSKDAV 61
Query: 432 --SDLEFESSSEDENDVEKKLVEEEFDTDEEDGLGKLLRYWEKSYNAASLV----NEYRK 485
+ F + + ++ +K VEE + L+ + S++ E R
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQR- 116
Query: 486 KRVEINVRPIRK--VVEAKARKKKRQARRMDKMKKKLETLMEAPDV 529
R+ + + K V R + K+++ L L A +V
Sbjct: 117 DRLYNDNQVFAKYNVS----RLQP-----YLKLRQALLELRPAKNV 153
Score = 42.5 bits (99), Expect = 3e-04
Identities = 59/379 (15%), Positives = 107/379 (28%), Gaps = 125/379 (32%)
Query: 239 HFDDESVLKHPSTTVEIQECCKDI---------RVLGRKDVRNLLKWWKVLHDEKTE--- 286
H D E T E Q KDI KDV+++ K +L E+ +
Sbjct: 6 HMDFE--------TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHII 55
Query: 287 KEKEEEKEG--------GEGEEE-EKVVEDEMDEEEKELMKATKE-------IEELKDEE 330
K+ + EE +K VE+ + K LM K + + E+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 331 RRELKR-----------KKKKVSKERTKLQE-KMNLKMLLKGDLG--------------- 363
R L + + K R L E + +L+ G LG
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 364 PTENDDEEMF--KLSQIRTTDQL-----DLITASKPEVFADSDEEHIDIVPKKIKYNVEK 416
D ++F L + + + L+ P + SD IK +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH------SSNIKLRIHS 229
Query: 417 SELDDSGLY----YKNP----DDSDLEFESSSEDENDVEKKLVEEEFDTDEEDGLG-KLL 467
+ + L Y+N +V+ F+ L K+L
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL--------------NVQNAKAWNAFN------LSCKIL 269
Query: 468 ---RYWEKSYNAASLVNEYRKKRVEINVRP----------IRKVVEAKARKKKRQARRMD 514
R+ L + + K ++ + + R+ +
Sbjct: 270 LTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 515 KMKKKL--ETLMEAPDVSD 531
+ + E++ + D
Sbjct: 327 PRRLSIIAESIRDGLATWD 345
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 58.0 bits (140), Expect = 2e-09
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 137 KLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAF 196
+LN L K++ E+ K +++ L + T+VG SR A
Sbjct: 23 QLNMLGKQEFERYKVSD-------------ITEVDRTAARRYLKEGRTDVG-ISVSRGAA 68
Query: 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
K+ L+ + +V +DL GGW A
Sbjct: 69 KIRWLHERGYLRITGRV-LDLGCGRGGWSYYA 99
Score = 49.5 bits (118), Expect = 1e-06
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 2 EDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGIL-K 60
+I K + + + T D +L D + N + + T+ L+
Sbjct: 129 WNIVKFKDKSNVFT-MPTEPSDTLLCDIGESSS-NPLVERDR----TMKVLENFERWKHV 182
Query: 61 EGGWFVTKVFR--SKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVV 107
F KV D L + F P SR + E++ +
Sbjct: 183 NTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYI 230
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 49.8 bits (119), Expect = 2e-06
Identities = 50/271 (18%), Positives = 108/271 (39%), Gaps = 24/271 (8%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
+ ++ L+ L+ E E + E EE +E ++EEE+ + E +++
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953
Query: 327 KDEERRELKRKKKKVSKERTKLQ-EKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLD 385
+ ++ +L+ + ++ R KLQ EK+ +K +++ KL++ R L+
Sbjct: 954 Q-QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER--KLLE 1010
Query: 386 LITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDEND 445
+ A+ +E+ ++ K K+ SEL+ L+ E S E +
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR-----------LKKEEKSRQELE 1059
Query: 446 VEKKLVEEEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARK 505
K+ +E E E + E A L + KK E+ +E + +
Sbjct: 1060 KIKRKLEGESSDLHE-------QIAELQAQIAELKAQLAKKEEELQA--ALARLEDETSQ 1110
Query: 506 KKRQARRMDKMKKKLETLMEAPDVSDAEKAR 536
K +++ +++ + L E + A + +
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNK 1141
Score = 37.5 bits (87), Expect = 0.012
Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 254 EIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE 313
+ + ++ K +NL K +E E +KE +E EK+ +++ E
Sbjct: 1012 RVSDLTTNLAEEEEK-AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR-KLEGES 1069
Query: 314 KELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEM 372
+L + E++ E + +L +K++++ +L+++ + K + E+ ++
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Score = 34.0 bits (78), Expect = 0.14
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEE---EKEGGEGEEEEKVVEDEMDEEEKELMKATKEI 323
K R L LH++ E + + + + + EEE + +++E + A K+I
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 324 EEL----------KDEERRE---LKRKKKKVSKERTKLQEKM 352
EL + E+ +++K+ +S+E L+ ++
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
Score = 32.1 bits (73), Expect = 0.59
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 268 KDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELK 327
+ L+ + +K +E E + +E+ + + ++ EK+ ++E+E LK
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Query: 328 ---DEERRELKRKKKKVSKERTKLQEK 351
++ +++ + +K
Sbjct: 1158 TELEDTLDTTATQQELRGSDYKDDDDK 1184
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 48.6 bits (115), Expect = 3e-06
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 22/115 (19%)
Query: 184 TEVGKGYRSRAAFKLIQLNRKF-------EFLQKSKVCVDLCAAPGGWMQVAKQN----- 231
+ SR+ KL + F E L VDL A PGGW +
Sbjct: 178 LKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVY 237
Query: 232 -----MMASSI-----IHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKW 276
MA S+ + + E K T I D+ K + +W
Sbjct: 238 SVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQW 292
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.8 bits (101), Expect = 3e-04
Identities = 27/200 (13%), Positives = 71/200 (35%), Gaps = 12/200 (6%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
+ ++ ++ ++E ++ K E K + ++ + +L + E +
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 327 KDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTEND----DEEMFKLSQI--RT 380
++ + S E KL+ + + + + N EE+ KL + +T
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Query: 381 TDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSS 440
+ I + ++++ ++ + EK EL+ + D E +
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN------RRIHDQAKEITETM 1057
Query: 441 EDENDVEKKLVEEEFDTDEE 460
E + E K +E + + +
Sbjct: 1058 EKKLVEETKQLELDLNDERL 1077
Score = 42.4 bits (100), Expect = 4e-04
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
RK++ K + + + + E E+ E +E+ +++ E +E + + KEI E
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 327 KDEE-RRELKRKKKKVSKERTKLQ 349
+++ E K+ + ++ ER + Q
Sbjct: 1057 MEKKLVEETKQLELDLNDERLRYQ 1080
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.5 bits (94), Expect = 4e-04
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELM-----KATKEIEELKDEERRELK 335
D T+ E E ++ EE+ K ++ E+D K + KA K++EE + + E
Sbjct: 77 ADRLTQ-EPESIRK--WREEQRKRLQ-ELDAASKVMEQEWREKAKKDLEEWN-QRQSEQV 131
Query: 336 RKKKKVSKERTK 347
K K ++ K
Sbjct: 132 EKNKINNRIADK 143
Score = 38.2 bits (88), Expect = 0.003
Identities = 8/65 (12%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 283 EKTEKEKEEEKEGGE--GEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
E K +EE+++ + + + ++ ++ +K+L + + E ++ + + K
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Query: 341 VSKER 345
++
Sbjct: 145 FYQQP 149
Score = 32.4 bits (73), Expect = 0.21
Identities = 11/78 (14%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 299 EEEEKVVEDEMDEEEKELMK----ATKEIEELKDEERRELKR--KKKKVSKERTKLQEKM 352
+E E + + +E+ K L + + +E +++ +++L+ +++ E+ K+ ++
Sbjct: 82 QEPESIRK-WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 353 NLKMLLKGDLGPTENDDE 370
K + + D +
Sbjct: 141 ADKAFYQ------QPDAD 152
Score = 30.9 bits (69), Expect = 0.73
Identities = 8/59 (13%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 298 GEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKM 356
+ + E E + +E + K ++EL + + ++K K+ + ++ + ++
Sbjct: 75 AQADRLTQEPESIRKWRE--EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Score = 29.7 bits (66), Expect = 1.9
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 256 QECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEE 312
+ ++ R +KD+ W E+ EK K + ++ + + D +
Sbjct: 106 KVMEQEWREKAKKDLEE----WNQRQSEQVEKNKINNRI-----ADKAFYQ-QPDAD 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 88/556 (15%), Positives = 162/556 (29%), Gaps = 190/556 (34%)
Query: 52 LKLASGILKEGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
L L+ G L E V T+ +I QL ++ + P+ + +A+
Sbjct: 9 LTLSHGSL-EHVLLVP--------TASFFIASQLQEQFNKILPEPTEGFAAD-----DEP 54
Query: 112 IAPAKLDTKF---------------FDP--KYAFKE-----LGAED-----GKLNALKKK 144
PA+L KF FD E L D KL
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 145 QVEKSKAL--GYPSDVNVLYKNLPVS-KFIEHETPTVLLQHATEVGKGYRSRAAFKLI-- 199
+ K+K L Y ++ + + ++ + L + E A I
Sbjct: 115 TLVKTKELIKNY-------ITARIMAKRPFDKKSNSALFRAVGE------GNAQLVAIFG 161
Query: 200 -QLNRK--FEFLQK----SKVCV-DLCAAPGGWMQ-VAKQNMMASSIIH--FDDESVLKH 248
Q N FE L+ V V DL + + + + A + + L++
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 249 PSTT--------VEI--------QECCKDI--RVLGR--KDVRNLLKWWKVLHDEK---- 284
PS T + I Q + ++LG ++R+ LK H +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTA 280
Query: 285 ----TEKEKEEEKE------------GGEGEE-------EEKVVEDEMDEEEKE--LMKA 319
E G E ++ED ++ E M +
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 320 TKEIEELKDEERRELKRKKKKVSKERTKLQEK-------MN----------------LKM 356
+ + + ++ + V+K + L +N L +
Sbjct: 341 ------ISNLTQEQV---QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 357 LLKGDLGPTENDDEEMFKLSQ--IRTTDQLDLITA---------SKPEVFADSDEEHIDI 405
L+ P+ D + S+ ++ +++ + + + + D + ++
Sbjct: 392 TLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 406 VPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVE---------KKLVEE--- 453
K I+ V Y D SDL S S E V+ + +
Sbjct: 451 NAKDIQIPV-----------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 454 ---EFDTDEEDGLGKL 466
+F GLG L
Sbjct: 500 HILDFGPGGASGLGVL 515
Score = 40.8 bits (95), Expect = 0.001
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 33/167 (19%)
Query: 388 TASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKN-PDDSDLEFESSSEDENDV 446
+++P + EH+ +VP + S+L + + K P+ ++ F + E
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIA--SQLQEQ--FNKILPEPTE-GFAADDEPTTPA 58
Query: 447 E---------KKLVEEEFDTDEEDGLGKLLRYWEKSY---N-----AASLVNEYRKKRVE 489
E LVE + L L +E Y N AA L+ E V+
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 490 INVRPIRKVVEAKARKKKRQARRMDKMKKKLETLMEAPDVSDAEKAR 536
I+ + A+ K+ ++ + L A A+
Sbjct: 119 TK-ELIKNYITARIMAKRPFDKKSN------SALFRA---VGEGNAQ 155
Score = 37.3 bits (86), Expect = 0.013
Identities = 44/250 (17%), Positives = 74/250 (29%), Gaps = 76/250 (30%)
Query: 29 GSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG-GWFVTKVFRSKDYTSLLWIFKQLFQ 87
GS GM D Y A K+ G+ + + + +L F
Sbjct: 1625 GSQEQGMG--MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFG---- 1677
Query: 88 RVHSTKPQASRKESAEIFVVCQHYIAPAKLDTKFFD------PKYAFKELGAEDGKLNA- 140
K + R+ + + + + + K F Y F+ +E G L+A
Sbjct: 1678 ---GEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEINEHSTSYTFR---SEKGLLSAT 1729
Query: 141 -----------------LKKKQVEKSKA------LG-Y-----PSDVNVLYKNLPVSKFI 171
LK K + + A LG Y +DV + + +
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV------MSIESLV 1783
Query: 172 EHETPTV-----LLQHATEVGKGYRSR---AAFKLIQLNRKF--EFLQKSKVCVDLCAAP 221
E V +Q A + RS A ++ F E LQ V +
Sbjct: 1784 E----VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ--YVVERVGKRT 1837
Query: 222 GGWMQVAKQN 231
G +++ N
Sbjct: 1838 GWLVEIV--N 1845
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A*
Length = 305
Score = 40.7 bits (95), Expect = 8e-04
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 185 EVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
E SR + KL + + KV VDL GGW
Sbjct: 58 ETDHHAVSRGSAKLRWFVERNLVTPEGKV-VDLGCGRGGWSYYC 100
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine,
virion, membrane, flavivirus, N7-methyltransferase,
2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus}
PDB: 2wa1_A*
Length = 276
Score = 40.3 bits (94), Expect = 8e-04
Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 15/92 (16%)
Query: 137 KLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAF 196
KLN L K+ Y+ V + ++ L SR
Sbjct: 24 KLNQLDAKEFMA-------------YRRRFVVE-VDRNEAREALAKGKTNTGHAVSRGTA 69
Query: 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
KL ++ + K V VDL G W A
Sbjct: 70 KLAWIDERGGVELKGTV-VDLGCGRGSWSYYA 100
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 39.6 bits (92), Expect = 0.001
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 137 KLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAF 196
KLNA+ K++ Y+ + + ++ + +VG SR
Sbjct: 15 KLNAMGKEEFFS-------------YRKEAILE-VDRTEARRARREGNKVGGHPVSRGTA 60
Query: 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
KL L + KV VDL GGW A
Sbjct: 61 KLRWLVERRFVQPIGKV-VDLGCGRGGWSYYA 91
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor,
P nucleotide-binding, RNA replication, viral protein;
HET: SFG; 2.00A {West nile virus}
Length = 321
Score = 40.0 bits (93), Expect = 0.002
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 137 KLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAF 196
+LN + K++ + Y+ + + ++ + G SR
Sbjct: 36 RLNQMTKEEFTR-------------YRKEAIIE-VDRSAAKHARKEGNVTGGHPVSRGTA 81
Query: 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
KL L + KV +DL GGW
Sbjct: 82 KLRWLVERRFLEPVGKV-IDLGCGRGGWCYYM 112
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral
enzyme STR ATP-binding, nucleotide-binding, RNA
replication, structura genomics; HET: SAM; 1.70A {Yokose
virus}
Length = 282
Score = 39.6 bits (92), Expect = 0.002
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
SR + KL + + V VDL GGW A
Sbjct: 71 AVSRGSAKLRWMEERGYVKPTGIV-VDLGCGRGGWSYYA 108
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER,
transferase-transferase inhibito; HET: 36A SAH; 1.70A
{Dengue virus 3} PDB: 3p97_A* 2xbm_A* 3evg_A*
Length = 267
Score = 39.2 bits (91), Expect = 0.002
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 18/93 (19%)
Query: 137 KLNALKKKQVEKSKALG-YPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAA 195
KLN L +K+ + K G D + L + H SR +
Sbjct: 21 KLNQLSRKEFDLYKKSGITEVDRTEAKEGLKRGETTHH----------------AVSRGS 64
Query: 196 FKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
KL + + + +V +DL GGW
Sbjct: 65 AKLQWFVERNMVIPEGRV-IDLGCGRGGWSYYC 96
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 39.0 bits (90), Expect = 0.003
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
+ + +K++EE ++ +EK E E+ E EKEL + +++L +E+++L+ K
Sbjct: 328 RNEFLGELQKKEEEMRQMFVQRVKEK--EAELKEAEKELHEKFDRLKKLHQDEKKKLEDK 385
Query: 338 KKKVSKERTKLQEK 351
KK + E +++
Sbjct: 386 KKSLDDEVNAFKQR 399
Score = 30.9 bits (69), Expect = 1.3
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 273 LLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMD--EEEKELMKATKEIEELKDEE 330
L + K LH++ +K + E + E+++K ++DE++ ++ K + +
Sbjct: 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 331 RRELKRKKKK 340
+ + K+KK
Sbjct: 417 QTLKRDKEKK 426
Score = 29.3 bits (65), Expect = 3.6
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
++ EKE E ++ E E+ ++ +E+K+L K ++ +E K++
Sbjct: 344 QMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLD----DEVNAFKQR 399
Query: 338 KKKVSKERTKLQEKMNLKMLLKG 360
K +++ + + L +
Sbjct: 400 KTAAELLQSQGSQAGGSQTLKRD 422
Score = 28.9 bits (64), Expect = 4.8
Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 265 LGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIE 324
+G KD K + + + ++ + + + EE ++ + E+E EL +A +
Sbjct: 306 MGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA---EK 362
Query: 325 ELKDEE---RRELKRKKKKVSKERTKLQEKMN 353
EL ++ ++ + +KKK+ ++ L +++N
Sbjct: 363 ELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVN 394
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 38.2 bits (89), Expect = 0.007
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK 347
KE EKE EEE+K E + +E++ E K K E ++EE++ +K K+ +E +
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEE 269
Query: 348 L 348
L
Sbjct: 270 L 270
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 36.5 bits (85), Expect = 0.008
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 290 EEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKRKKKKVSKERT 346
EE E++ + V E E+ L A +E++ LKD+ R + +K++ +E
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELK 61
Query: 347 KLQE 350
+
Sbjct: 62 ARER 65
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 37.9 bits (87), Expect = 0.008
Identities = 14/74 (18%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
+ H K +K + E ++ E + +EK ++ + E EL + +++++ + + +EL+ K
Sbjct: 324 RREHVAKMKKMEMEMEQVFEMKVKEK--VQKLKDSEAELQRRHEQMKKNLEAQHKELEEK 381
Query: 338 KKKVSKERTKLQEK 351
+++ E+ + +
Sbjct: 382 RRQFEDEKANWEAQ 395
Score = 30.6 bits (68), Expect = 1.5
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMK-----ATKEIEELKDEE---RR 332
D K + + + EEE + +M + E E+ + +++++LKD E +R
Sbjct: 303 VDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQR 362
Query: 333 ELKRKKKKVSKERTKLQEKMN 353
++ KK + + +L+EK
Sbjct: 363 RHEQMKKNLEAQHKELEEKRR 383
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA
capping, S-adenosyl-L-methionine, viral protein; HET:
SAM; 2.90A {Meaban virus}
Length = 265
Score = 36.9 bits (85), Expect = 0.011
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 137 KLNALKKKQVEKSKALGYPSDVNVLYKNLPVSKFIEHETPTVLLQHATEVGKGYRSRAAF 196
KLNA+ K++ + YK V + + + L+ SR
Sbjct: 16 KLNAMTKEEFTR-------------YKRAGVME-TDRKEARDYLKRGDGKTGLSVSRGTA 61
Query: 197 KLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVA 228
KL + + +V VDL GGW A
Sbjct: 62 KLAWMEERGYVELTGRV-VDLGCGRGGWSYYA 92
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 36.8 bits (85), Expect = 0.013
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD--EERRELKRKKK 339
+E +E+ + + +EE+ + D+ + A ++ EL+ R+ + K
Sbjct: 71 HVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKG 130
Query: 340 KVSKERTKLQEKMNLKML 357
+ + K++
Sbjct: 131 RSHATAQEEILKLSEVFK 148
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 36.2 bits (84), Expect = 0.015
Identities = 7/72 (9%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERR---ELKRKK 338
+ +E E E+ +E+ + ++ + ++ E++ R + + +
Sbjct: 34 ESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHRYLRLYADFENFR 93
Query: 339 KKVSKERTKLQE 350
++ +E ++
Sbjct: 94 RRTRQEMEAAEK 105
Score = 30.9 bits (70), Expect = 0.87
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
E+ + +EE E E +E+ EE E + EEL + + + + K
Sbjct: 17 PEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAK 74
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 35.8 bits (83), Expect = 0.030
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 6/128 (4%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
KD L+ +L K + + E + + V M EE ++ KE EEL
Sbjct: 128 YKDYSIFLENENILIKAKNFLVFQGDVE--QIAAQSPVELSRMFEEVSGSIQYKKEYEEL 185
Query: 327 KDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLS---QIRTTDQ 383
K++ + K + + R E K ++ + ++ +
Sbjct: 186 KEKIEKLSKSATESIKNRRRIHGELKTYKSPGL-EVLFQGPRGSRYDEAEGRFEVINNET 244
Query: 384 LDLITASK 391
L K
Sbjct: 245 EQLKAEEK 252
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 35.1 bits (81), Expect = 0.040
Identities = 7/61 (11%), Positives = 22/61 (36%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
+ E+ E + + +E + +++ +EE+K E + + +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 344 E 344
+
Sbjct: 235 D 235
Score = 33.2 bits (76), Expect = 0.15
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 285 TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKE 344
+E E E + V E+ EE E A E + +E + E E
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAE---AVLEGDASLEEVKAEASEDNAGTDSE 231
Query: 345 RTKLQE 350
+
Sbjct: 232 DNSDAQ 237
Score = 31.2 bits (71), Expect = 0.64
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKK 339
+ + E + + E + + + E + L + E E E +
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 35.7 bits (81), Expect = 0.041
Identities = 11/70 (15%), Positives = 35/70 (50%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+ K + + E ++ E M+++E+ + K++ E + +R +L +++++
Sbjct: 491 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 550
Query: 343 KERTKLQEKM 352
+ + QE++
Sbjct: 551 ALKLQEQEQL 560
Score = 33.4 bits (75), Expect = 0.24
Identities = 12/80 (15%), Positives = 34/80 (42%)
Query: 274 LKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRE 333
+ +E+ ++KE + + EK+ D + +++ +++E + +
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564
Query: 334 LKRKKKKVSKERTKLQEKMN 353
+++ + + E LQ KM
Sbjct: 565 FQKESRIMKNEIQDLQTKMR 584
Score = 29.9 bits (66), Expect = 2.5
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
K EK E +E+E+ + ++ E+E+ L + ++ + E ++L+ K ++
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 34.9 bits (81), Expect = 0.053
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 300 EEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN 353
+ + VE+ M+EEE + +E EE E K+ K K ++ E MN
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269
Score = 34.1 bits (79), Expect = 0.096
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
K E E EEE E E ++E +E EE K + +++++
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAA----VEEEEEEKKPKTKKVEKT 261
Score = 28.3 bits (64), Expect = 6.6
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
+ E+ +EEKE + E + E+E + K++ K + E +
Sbjct: 224 PMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELM 268
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 34.9 bits (80), Expect = 0.078
Identities = 22/150 (14%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 273 LLKWWKVLHDEKTEKEKEEEKEGGEG----EEEEKVVED---EMDEEEKELMKATKEIEE 325
+ +L +EK ++ +EE+ G + E V+D + ++ +EL ++ +
Sbjct: 1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ 1959
Query: 326 L---KDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTD 382
++++ + K+K + + +L + + K D E + + +
Sbjct: 1960 KLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVK----AYADLEKAEPTGPLREE 2015
Query: 383 QLDLITASKPEVFADSDEEH-IDIVPKKIK 411
L A+ + I + K I
Sbjct: 2016 VEQLENAANELKLKQDEIVATITALEKSIA 2045
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.4 bits (78), Expect = 0.096
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
K E E E EGE + + E E+E +K EL + ++
Sbjct: 722 AKAEAESRAEAARIEGEGSVLQAKLKAQALAIE---TEAELERVKKVREMELIYARAQLE 778
Query: 343 KERTKLQEKMNLK 355
E +K Q+ N++
Sbjct: 779 LEVSKAQQLANVE 791
Score = 30.9 bits (69), Expect = 1.4
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+K + E EK E E E + ++ +A E + E + + K K
Sbjct: 691 QKILDQSEAEKARKELLELEA-MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749
Query: 343 KERTKLQEKMN 353
+ + ++
Sbjct: 750 ALAIETEAELE 760
Score = 30.2 bits (67), Expect = 2.2
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 283 EKTEKEKEEEKEGGEGE-EEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
E + + + + + E E E ++ E E +A E+E K ++ ++ KK K
Sbjct: 738 EGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFK 796
Score = 29.8 bits (66), Expect = 3.2
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 283 EKTEKEKEEEKEGGEGEEE-EKVVEDEMDEEEKELMKATKEIEELKDEE------RRELK 335
+ E E E E + E E + E E + +E K +E ++
Sbjct: 749 QALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIR 808
Query: 336 RKKKKVSKERTKLQEKMNLKMLLKGD 361
+ + KL + + LK L D
Sbjct: 809 DLAVAGPEMQVKLLQSLGLKSTLITD 834
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 34.2 bits (79), Expect = 0.099
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 301 EEKVVED-EMDEEEKELMKATKEIEELKDEERRELK 335
+VVE E++E ++ M+ T +EL +E ++K
Sbjct: 290 AYRVVEGLEINEFARKRMEIT--AQELL-DEMEQVK 322
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 34.2 bits (78), Expect = 0.13
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMN-- 353
GE + K+ E+++E++ + K +++K++ +EL+ ++ E E
Sbjct: 91 GERGIQAKL--KELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQF 148
Query: 354 --LKMLLKGDLGPTENDDEEMFKL-------SQIRTTDQLDLI 387
L + +D +M +L RT + ++
Sbjct: 149 DILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMV 191
Score = 33.0 bits (75), Expect = 0.25
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEEL 326
K++ + + + + E EK+ + K++ +E + + KEI E
Sbjct: 124 GKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGER 183
Query: 327 KDEERR---ELKRK----KKKVSKERTKLQE 350
E E + K K + ER +QE
Sbjct: 184 THAETVMVKEYRDKIDALKNAIEVERDGMQE 214
Score = 32.2 bits (73), Expect = 0.47
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKE------LMKATKEIEELKDEERRELKRKKKKV 341
+K +EK G E EE + E + E ++ L KA ++ EE +++R +
Sbjct: 117 DKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATAL 176
Query: 342 SKE---RTKLQEKM 352
KE RT + M
Sbjct: 177 QKEIGERTHAETVM 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 33.4 bits (77), Expect = 0.15
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 283 EKTEKEKEEEKEGGEGEE------EEKVVEDEMDEEEKELMKA---TKEIEELKDEERRE 333
E+ EKE+EE ++ G + +EK V+ +DE E +L++A + ++ L+++ +++
Sbjct: 24 EEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQK 83
Query: 334 LKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEE 371
L KK ++ ++ K+ E+ +K + L + D
Sbjct: 84 LVGKKVRIGTDKGKIIEEA-VKEAVSEILETSRRIDLI 120
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 33.7 bits (76), Expect = 0.16
Identities = 22/187 (11%), Positives = 60/187 (32%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
+ + +E + K ++ E + +M+ +E + ++ ER++L+ + +
Sbjct: 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQ 418
Query: 343 KERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEH 402
+E +++Q+++ LK L D + E +
Sbjct: 419 EEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHD 478
Query: 403 IDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEEDG 462
+ + D + + E ++ K+ + D +E
Sbjct: 479 NASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETA 538
Query: 463 LGKLLRY 469
+ K+ R
Sbjct: 539 MDKIHRE 545
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 33.1 bits (76), Expect = 0.21
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
E ++ +E + EEE++ E E E E + KE +EL DE
Sbjct: 332 RGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.29
Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 16/141 (11%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
EKEKE+ + E ++ + + + K I++ +E E
Sbjct: 199 EMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSF 258
Query: 341 VSKERTKLQEKMNLKMLLKGDLGPTEN---------DDEEMFKLSQIRTTDQLDLITASK 391
V +L + +++ + +N ++ ++++ I
Sbjct: 259 V-----ELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILD- 312
Query: 392 PEVFADSDEEHIDIVPKKIKY 412
E DE + + +
Sbjct: 313 -EPTVYLDENRRAKLAEIFRK 332
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 32.9 bits (76), Expect = 0.31
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 306 EDEMDEEEKELMKATKEIEE-LKDEERR------ELKRKKKKVSKER-TKLQEKMNLKML 357
E ++ E+ EL K +++ L E + EL+ + +R + LQE+ K +
Sbjct: 404 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAM 463
Query: 358 LKGDLGPTEN 367
+ D+ P+E
Sbjct: 464 SEHDMLPSEP 473
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.6 bits (75), Expect = 0.34
Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 315 ELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDL-------GPTEN 367
+ KA ++ ++L E+ +L +KK++ ++ + + + K+ G++ E
Sbjct: 65 KRFKAKEDAKDLI-AEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEE 123
Query: 368 DDEEMFKLSQIRT--TDQLDLITASKPEVFADSDEEHIDIVPK 408
++E +RT + A + H +++ +
Sbjct: 124 NNEL------VRTWTPENYKKPEQIAAATGAPAKLSHHEVLLR 160
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 32.4 bits (75), Expect = 0.39
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 326 LKDEERRE-LKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQL 384
L EE+ + +K ++++ K + + + + D + ++ + T +
Sbjct: 484 LLSEEQYKLVKELEREIEKWKEFYKSER---------VSVAVGGDTRSYSVATLMTMNYT 534
Query: 385 DLITASKPEVFADSDEEHIDIVPKKIKY 412
K + V ++KY
Sbjct: 535 LDDVKEKFGYEVPQHPYVKEEVEIQLKY 562
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.45
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 13/33 (39%)
Query: 514 DKMK-KKLETLME--APDVSDAEKARNIRAPSF 543
+K KKL+ ++ A D AP+
Sbjct: 18 EKQALKKLQASLKLYADD----------SAPAL 40
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 32.1 bits (73), Expect = 0.45
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 295 GGEGEEEEKVVED-EMDEEEKELMKAT-KEIEELKDE 329
G+G+ E + D D+ E +K + E+ K
Sbjct: 317 KGDGDYE--LATDVSNDDFLWERIKKSEAELLAEKKC 351
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 32.1 bits (73), Expect = 0.50
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 314 KELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMF 373
++A KE ++ ++ E + + K K E+ +L+++ + L+ E D+ +
Sbjct: 374 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLID---MNAEGDETGVM 430
Query: 374 K--LSQIRTTDQLD 385
L +++
Sbjct: 431 DSLLEALQSGAAFR 444
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 32.3 bits (74), Expect = 0.50
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 306 EDEMDEEEKELMKATKEIEE-LKDEERR------ELKRKKKKVSKER-TKLQEKMNLKML 357
E E+ E+ EL I E L++ E ELK KK ER + + + +
Sbjct: 698 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQI 757
Query: 358 LKGDLGPTE 366
+ DL P E
Sbjct: 758 KEQDLMPAE 766
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 32.0 bits (71), Expect = 0.52
Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 1/223 (0%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKV 341
TE + ++K E + + + ++ A + ++ +K
Sbjct: 331 PVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHAN 390
Query: 342 SKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKP-EVFADSDE 400
L+EK N++ L G + + +L + E + E
Sbjct: 391 DALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAE 450
Query: 401 EHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFDTDEE 460
+ + + K ++ + Y K D + + + + V+ +
Sbjct: 451 QLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNL 510
Query: 461 DGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKA 503
+ + L Y K + A + E+ K N RP+ E
Sbjct: 511 NRFSRGLGYAGKFTSLADWITEFGKAVRTENWRPLFVKTETII 553
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 32.2 bits (73), Expect = 0.55
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 26/114 (22%)
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK---ERTKLQEKM 352
G+G + + +E E +E E E EE+ +E KKK + + L++ +
Sbjct: 18 GDGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNL 77
Query: 353 NLKMLLKGDLGPTENDDEEMFKLSQIRTTD-----QLDLITASKPEVFADSDEE 401
TE D + IR TD Q + + D+E
Sbjct: 78 M-----------TEGDMK-------IRKTDIPERYQELRAGITDYGNMSSEDQE 113
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 31.6 bits (72), Expect = 0.56
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDE 329
+ V +++ +E M T +EL +E
Sbjct: 297 KIVEGLPINDFSREKMDLT--AKELAEE 322
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 31.5 bits (72), Expect = 0.66
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 301 EEKVVED-EMDEEEKELMKAT-KEIEELKDE 329
E K+V+ +D +E + T E+ E ++
Sbjct: 293 EYKIVQGLSIDAFSQERINVTLNELLEEQNG 323
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 31.5 bits (72), Expect = 0.82
Identities = 17/136 (12%), Positives = 39/136 (28%), Gaps = 4/136 (2%)
Query: 322 EIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTT 381
I E D++ R + + K + + K K G T ++ + + T
Sbjct: 38 AIIEA-DKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTL 96
Query: 382 DQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKN-PDDSDLEFESSS 440
+ ++ S + + + + E D L N +S +
Sbjct: 97 KGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVP--IAQD 154
Query: 441 EDENDVEKKLVEEEFD 456
E+ + +
Sbjct: 155 EETGNTVVRTFGNTTK 170
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 30.9 bits (70), Expect = 0.92
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
+KE +E + ED ++ E +L +EI ELK+ + LK
Sbjct: 240 AILNQKEEQHIIDEVQSHEDNINNEIIKL---REEIVELKELIKTSLK 284
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.8 bits (70), Expect = 1.1
Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 7/141 (4%)
Query: 322 EIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTT 381
++ + D E R + + ++K + + + KM K +G E+ E + +
Sbjct: 35 QLVKA-DSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTAD 93
Query: 382 DQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKN-PDDSDLEFESSS 440
+L + +V DE I+ + ++E ++ N S S+
Sbjct: 94 ALANLKVSQIKKVRLLIDEA---ILKCDAERIKLEAERFENLREIGNLLHPSV--PISND 148
Query: 441 EDENDVEKKLVEEEFDTDEED 461
ED ++ +++ + +
Sbjct: 149 EDVDNKVERIWGDCTVRKKYS 169
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.8 bits (69), Expect = 1.2
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 456 DTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVVEAKARKKKR------- 508
+ DE+ + +Y + S + Y+K I P+ + K KKKR
Sbjct: 213 EEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMS 272
Query: 509 QARRMDKMKKKLETLMEA 526
A++ D++ +K + + A
Sbjct: 273 LAQKKDRVAQKKASFLRA 290
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 30.7 bits (70), Expect = 1.3
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 295 GGEGEEEEKVVE-DEMDEEEKELMKATKEIEELKDEERRELK 335
+G + +E E+ +K + L + R E+
Sbjct: 282 TKDGVK--HSDINQLGNEAERAALKES--YSHLA-KLRDEVI 318
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 30.3 bits (69), Expect = 1.4
Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKE-----IEELK 327
G +V+ ++ +E++ ++ + ++LK
Sbjct: 293 NNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDLK 329
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 30.6 bits (69), Expect = 1.5
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 314 KELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGD 361
+ + +A +E E ++ ++ E +R + + + + +E+ K +
Sbjct: 386 QAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSE 433
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 30.6 bits (69), Expect = 1.5
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMK-ATKEIEELKDEERRELKRKKKKVSKE 344
K +K +G +VV+ DE ++ L + E+L ++ER EL+++K
Sbjct: 110 NKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVT 169
Query: 345 RTKL 348
Sbjct: 170 LKTY 173
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 1.6
Identities = 15/104 (14%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 315 ELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDL-------GPTEN 367
+ K + ++EL + RE+ ++ ++ E +L++K++ + ++ G EN
Sbjct: 63 KRRKKGEPVDELL-AKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDEN 121
Query: 368 DDEEMFKLSQIRTTDQLDLITASKPEVFADSDE------EHIDI 405
D+ + + R + + + + H+D+
Sbjct: 122 DNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDL 165
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.1 bits (68), Expect = 1.6
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 314 KELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEK 351
++A KE ++ ++ E + + K K E+ +L+++
Sbjct: 303 NMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.9 bits (66), Expect = 1.9
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELM--KATKEIEELKDEERRELKRKKKK 340
++ +E E ++ E + + D + ++ KA K++EE + + E K K
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWN-QRQSEQVEKNKI 151
Query: 341 VSKERTK 347
++ K
Sbjct: 152 NNRIADK 158
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 30.3 bits (67), Expect = 2.1
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 2/115 (1%)
Query: 287 KEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERT 346
K + +E E + E DE + EEK K++E + +RK +
Sbjct: 3 KRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVIP 62
Query: 347 KLQEK--MNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSD 399
K+ L + E+ Q+ T+++L + ++ D
Sbjct: 63 KINSPKCPECGQHLDDPNLKYQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYED 117
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 30.1 bits (68), Expect = 2.2
Identities = 32/289 (11%), Positives = 79/289 (27%), Gaps = 46/289 (15%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKD-----EERRELKR 336
EK +EE + + E +++ ++ E +
Sbjct: 138 KGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVS 197
Query: 337 KKKKVSKER------TKLQEKMNLKMLLKGD--LGPTENDDEEMFKLSQIR--------- 379
+ V+ R + +K + L + E+
Sbjct: 198 RLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEG 257
Query: 380 TTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESS 439
+ +L + + + + +P + V E+ + G E+
Sbjct: 258 VVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKG---------QPLAEAK 308
Query: 440 SEDENDVEKKLVEEEFDTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEINVRPIRKVV 499
+ + + E + + E L W + + V+P VV
Sbjct: 309 GLLRMPRQVRAAQVEAEEEGETVYLTLFLEWT--------------EPKDYRVQPHMNVV 354
Query: 500 EAKARKKKRQARRMDKMKKKLETLMEA-PDVSDAEKARNIRAPSFLYYY 547
+ + + + + + + E + EA V E A + + +Y +
Sbjct: 355 VPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPF 403
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 30.2 bits (67), Expect = 2.3
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 254 EIQECCKDIRVLGRKDVRNLLKWWKVLHD----------EKTEKEKEEEKEGGEGEEEEK 303
+I + +++R ++ K L E + + + G +E
Sbjct: 16 QINQRFEELR----LITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERM 71
Query: 304 VVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKM 352
E + +++ L + + + R EL K +K + K Q +
Sbjct: 72 SRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTII 120
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 28.0 bits (62), Expect = 2.4
Identities = 13/65 (20%), Positives = 34/65 (52%)
Query: 311 EEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDE 370
+E+E+ + K+++++K++ + + KK+ + T L++K +L +K E
Sbjct: 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70
Query: 371 EMFKL 375
+ + L
Sbjct: 71 KNYHL 75
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.5 bits (65), Expect = 2.4
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 458 DEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEIN--VRPIRKVVEAKARKKKRQARRMDK 515
D+ + +LL + + A ++ E +++R N RK EA R ++R+ +
Sbjct: 102 DDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFT 161
Query: 516 MKKKLETLMEAPDVSD 531
+ K + + D
Sbjct: 162 PQNKQDVPATKQEADD 177
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 29.5 bits (66), Expect = 2.6
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 266 GRKDVRNLLKWWKVLHDEKTEKEKEE-EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIE 324
R + + + W ++ D ++ EE E++ E E+ E+E EE E E
Sbjct: 184 LRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWA 243
Query: 325 E 325
E
Sbjct: 244 E 244
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 29.5 bits (65), Expect = 2.7
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 299 EEEEKVVEDEMDEEEKELMKATKEIEELKDE---ERRELKRKKKKVSKERTKLQ 349
+ + + E + E EK+L EL+ E + ++K + + E+ L
Sbjct: 332 KTKVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 29.1 bits (65), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE 313
E+++ EE+EG EG EE+ E + E+
Sbjct: 204 PTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQ 234
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.5 bits (65), Expect = 2.9
Identities = 33/249 (13%), Positives = 76/249 (30%), Gaps = 31/249 (12%)
Query: 221 PGGWMQVAKQNMMASSIIHFDDESVLKHPSTTVEIQECCKDIRVLGRKDVRNLLKWWKVL 280
P W+ + + I D VL++ +DI + D R K
Sbjct: 186 PSFWLTALENLPIVCDTITDRDAEVLEY----------LQDIGLEYLTDGRPGFKLLFRF 235
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKAT---KEIEELKDEERRELKRK 337
+ ++E + + E + + D E R+ + K
Sbjct: 236 DSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNK 295
Query: 338 KKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFAD 397
K + K+ + E+ DEE+ + + R + K
Sbjct: 296 TTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKD----- 350
Query: 398 SDEEHIDIVPKKIKY-NVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFD 456
++P+ + + E + D+ + + + E+++D + + E
Sbjct: 351 ------KLIPRAVDWFTGAALEFEFEE------DEEEADEDEDEEEDDDHGLEDDDGESA 398
Query: 457 TDEEDGLGK 465
+++D G+
Sbjct: 399 EEQDDFAGR 407
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.5 bits (67), Expect = 3.0
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
++ KEK+ + E E+ + + +++E+ K + + ++ +V+
Sbjct: 404 DEVRKEKDAAVQSQEFEKAASL--------RDTEQRLREQVEDTKKSWKEKQGQENSEVT 455
Query: 343 KE 344
+
Sbjct: 456 VD 457
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 28.3 bits (63), Expect = 3.2
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 311 EEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDE 370
E EKE+ +E LK+ + R+K+ K + LQEK +L++ ++ + + +E
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 371 EMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSEL 419
+L + + QL+ + D +E + ++ KK K E SEL
Sbjct: 70 RCDQLIKNKI--QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.9 bits (65), Expect = 3.5
Identities = 8/61 (13%), Positives = 26/61 (42%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK 347
+E+K EE +++ + E E + ++++ ++ + + ++ER
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 348 L 348
+
Sbjct: 62 I 62
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.1 bits (65), Expect = 3.6
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 285 TEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKE 344
E+E ++E E ++ ++++E++ + D + K+KKKK K
Sbjct: 52 GEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGD----GDGDGATGKKKKKKKKKR 107
Query: 345 RTKLQ 349
K+Q
Sbjct: 108 GPKVQ 112
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 28.9 bits (64), Expect = 3.9
Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 292 EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEK 351
E E ++ ++ + + K ++ +E LK + + ++ + + + +Q+K
Sbjct: 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALK-LQVSKNEQTLQDTNAKIASIQKK 82
Query: 352 MN 353
M+
Sbjct: 83 MS 84
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 29.0 bits (66), Expect = 4.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 302 EKVVEDEMDEEEKELMKATKE-----IEELKDEERRELK 335
E+++E ++EEE E + + I E+ EE +
Sbjct: 278 ERILELNLNEEELEAFRKSASILKNAINEITAEENKHQN 316
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 28.9 bits (64), Expect = 4.2
Identities = 8/72 (11%), Positives = 22/72 (30%)
Query: 281 HDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
H EK KE +K + + ++ + E+ + +
Sbjct: 281 HKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRL 340
Query: 341 VSKERTKLQEKM 352
+++ + E +
Sbjct: 341 YLEQQVQFYETI 352
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 28.7 bits (65), Expect = 4.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELM 317
++T++ E +E GE E E + E E+D+ +EL+
Sbjct: 43 KETQEFIELLREEGENELEIEKYEKELDQLYQELL 77
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 28.7 bits (65), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQN 231
Y SR KL + ++F K C+D+ ++ GG+ V QN
Sbjct: 17 YVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN 58
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 28.8 bits (65), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 190 YRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQN 231
Y SR KL + F + + +D+ A+ GG+ V QN
Sbjct: 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN 106
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 28.2 bits (64), Expect = 6.1
Identities = 6/37 (16%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 302 EKVVEDEMDEEEKELMKAT-KEIEELKDEERRELKRK 337
++++E + +E + M+ + ++++ ++ EL+ K
Sbjct: 282 KQIIESPLSADELKKMQDSAATLKKVLNDGLAELENK 318
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 28.3 bits (64), Expect = 7.0
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 267 RKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELM--KATK--- 321
RK+VR +++ + E E + G + E +E M + + L +A +
Sbjct: 583 RKEVRAVIR-----PEGYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRD 637
Query: 322 EIEELKDEERRELKRKKKKVSKERTK 347
EI L+ + + ++R +
Sbjct: 638 EIRALEARLQGVRAPEPVPGGRKRKR 663
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 28.3 bits (62), Expect = 7.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 420 DDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEFD 456
+S ++ D+ FE++ D D+ K++ FD
Sbjct: 396 SESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFD 432
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 28.4 bits (63), Expect = 7.4
Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 255 IQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEK 314
+++ LG K + +++ ++ + K EE+E+ ++ +
Sbjct: 625 RNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVIN 684
Query: 315 ELMKATKE--------IEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDL 362
+ I L E ++L ++K++ E L + + K + DL
Sbjct: 685 GPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL-SAKDIWNTDL 739
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 28.2 bits (64), Expect = 7.5
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 302 EKVVEDEMDEEEKELMKA--------TKEIEELKDE 329
E+V+E ++D +EK +K +++ L+DE
Sbjct: 275 EEVIEVDLDADEKAQLKTSAGHVHSNLDDLQRLRDE 310
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.4 bits (63), Expect = 7.6
Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 289 KEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEER--RELKRKKKKVSKER- 345
G + E+++E K+ KA E ++L ++ R K K
Sbjct: 11 SGLVPRGSHMFKREEIIE----MANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 346 -TKLQEKMN---LKMLLKGDLGPTENDDEEMFKL---SQIRTTDQLDLITASKPEVFADS 398
E + L+M + + P D+ +++K + D+ + S
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLS 126
Query: 399 DEEHIDIVPKKIKYNVEKSELDD--SGLYYKNPDDSDLEFE 437
DE+ I IK + K L G D DL E
Sbjct: 127 DEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLE 167
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 27.9 bits (61), Expect = 7.8
Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 9/180 (5%)
Query: 315 ELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGPTENDDEEMFK 374
E+ + TKE++ L DE+ + +K K+ + E+ ++ + T + F
Sbjct: 57 EIERNTKEVQRLVDEKIKAMKDKEYYAGGKPQGTIEQ---RIAMTSPAHVTGINRPHDFD 113
Query: 375 LSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDL 434
S++R+ +L + S +D ++ + +++ N KS ++ S + D+
Sbjct: 114 FSKVRSYSRLRTLEESMEM---RTDPQYYEKKMIQLQLNFIKS-VEGSFNSFDAADELIE 169
Query: 435 EFESSSEDENDVEKKLVEEEFDTDEEDGLGKLLRYWEKS-YNAASLVNEYRKKRVEINVR 493
E + D+ E L E +E D G + E + Y S + +YR+ +++++
Sbjct: 170 ELKKIPPDDF-YELFLRISEISFEEFDSEGNTVENVEGNVYKILSYLEQYRRGDFDLSLK 228
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 27.9 bits (63), Expect = 8.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKD 328
E+V+E +++ EEK + I E K
Sbjct: 287 EQVIELQLNSEEKAKFD--EAIAETKR 311
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 27.7 bits (62), Expect = 8.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 288 EKEEEKEGGEGEEEEKVVEDEMDEEE 313
EK E+ E E E + + + +EEE
Sbjct: 181 EKLAEEAAAEVAEPEVIKKGKEEEEE 206
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 27.6 bits (61), Expect = 8.5
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 282 DEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK---- 337
+ +E E E + E E K + + EEK L+ + R L+R
Sbjct: 4 EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAG 63
Query: 338 KKKVSKERTKLQEKM 352
+ V+ RT+ + ++
Sbjct: 64 ELLVATARTQARGEV 78
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 27.6 bits (61), Expect = 8.8
Identities = 16/134 (11%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKERTK--LQEKMNL 354
E E + + + +E ++ +++ + + E K E + + ++ K+R + ++
Sbjct: 14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRR 73
Query: 355 KMLLKGDLGPTENDDEEMFKLSQIRTTDQLDLITASKPEVFADSDEEHIDIVPKKIKYNV 414
K L + + +E +L + + + + A E + +E+ + ++ + +
Sbjct: 74 KRLAIQEEIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGL 133
Query: 415 EKSELDDSGLYYKN 428
S +++ +
Sbjct: 134 IASRIEEIKSELGD 147
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.4 bits (62), Expect = 8.9
Identities = 10/71 (14%), Positives = 18/71 (25%)
Query: 283 EKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVS 342
E K EEK E ++E E + K +K+
Sbjct: 89 EAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQP 148
Query: 343 KERTKLQEKMN 353
++ +
Sbjct: 149 DVPKNTEKTLK 159
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.1 bits (63), Expect = 9.3
Identities = 13/77 (16%), Positives = 23/77 (29%)
Query: 387 ITASKPEVFADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDV 446
++ + D K K ++ E D+ + D E E
Sbjct: 12 LSTNIESGKFDEKAAEAAAYQPKPKVEDDEDEDIDALIEDLESHDGHDAEEEEEEATPGG 71
Query: 447 EKKLVEEEFDTDEEDGL 463
+ + E+ TD GL
Sbjct: 72 GRVVPEDMLQTDTRVGL 88
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 27.9 bits (63), Expect = 9.4
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKD 328
E+V+E E++EEEK+ + K ++++
Sbjct: 295 ERVIELELNEEEKKQFQ--KSVDDVMA 319
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 27.9 bits (63), Expect = 9.6
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKD 328
E+++E ++D++EK K + +
Sbjct: 287 ERIIEIDLDKDEKAQFD--KSVASVAG 311
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 26.4 bits (58), Expect = 9.7
Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
+E+ +E + E+ KVV + +++ + E + +E + + E E KR++ ++ E
Sbjct: 18 LEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQ-REYSEFKRQQLELDDEL 76
Query: 346 TKLQEKM 352
++ +M
Sbjct: 77 KSVENQM 83
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 27.8 bits (63), Expect = 9.8
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 302 EKVVEDEMDEEEKELM----KATKE-IEELKD 328
E ++E ++ E++L+ + L +
Sbjct: 284 EDILELDLTPLEQKLLGESINEVNTISKVLDN 315
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 26.9 bits (59), Expect = 9.8
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 286 EKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
+E E K E E E+ V + EE +K KE K E +E + ER
Sbjct: 61 YQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLER 120
Query: 346 TKLQEK 351
+ ++K
Sbjct: 121 LQEKDK 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.373
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,312,697
Number of extensions: 516246
Number of successful extensions: 2331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 424
Length of query: 547
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 449
Effective length of database: 3,965,535
Effective search space: 1780525215
Effective search space used: 1780525215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.1 bits)