RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3133
(547 letters)
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 88.3 bits (218), Expect = 5e-21
Identities = 32/111 (28%), Positives = 50/111 (45%)
Query: 1 MEDITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILK 60
D + A+ + KV VV+ D +PN+ D L AL++ +L
Sbjct: 68 QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA 127
Query: 61 EGGWFVTKVFRSKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQHY 111
GG FV KVF+ + + L + LF +V KP +SR S E+++V
Sbjct: 128 PGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGR 178
Score = 71.4 bits (174), Expect = 5e-15
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 189 GYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFDD 242
G RSRA FKL ++ + + + VDL AAPGGW Q + I D
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACD 54
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 72.6 bits (178), Expect = 5e-15
Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 12/136 (8%)
Query: 3 DITTDKCRIAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCLTLGALKLASGILKEG 62
++ + + + + + D +L D + N +A TL L L L
Sbjct: 115 NLVRLQSGVDVFF-IPPERCDTLLCDIGESSP-NPTVEAG----RTLRVLNLVENWLSNN 168
Query: 63 GWFVTKVFR--SKDYTSLLWIFKQLFQRVHSTKPQASRKESAEIFVVCQ---HYIAPAKL 117
F KV + ++ P SR + E++ V + ++ +
Sbjct: 169 TQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNASGNIVSSVNM 227
Query: 118 DTKFFDPKYAFKELGA 133
++ ++ + A
Sbjct: 228 ISRMLINRFTMRHKKA 243
Score = 58.8 bits (142), Expect = 3e-10
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 185 EVGKGYRSRAAFKLIQLNRKFEFLQKSKVCVDLCAAPGGWMQVAKQNMMASSIIHFD 241
E SR + KL + + VDL GGW +
Sbjct: 42 ETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLT 97
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 32.0 bits (72), Expect = 0.10
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
+ V E++E ++ M+ T +EL +E ++K
Sbjct: 132 AKDGAYRVVEGLEINEFARKRMEIT--AQELL-DEMEQVK 168
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 161
Score = 31.7 bits (71), Expect = 0.13
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDE 329
E++VE ++D+ E++LM E+L D+
Sbjct: 131 EEIVEWDLDDYEQDLMADA--AEKLSDQ 156
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 31.6 bits (71), Expect = 0.13
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDE 329
+ V +++ +E M T +EL +E
Sbjct: 143 KIVEGLPINDFSREKMDLT--AKELAEE 168
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
arcticum [TaxId: 87645]}
Length = 171
Score = 31.7 bits (71), Expect = 0.14
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDE 329
+ V +D +E + T + EL +E
Sbjct: 137 KIVQGLSIDAFSQERINVT--LNELLEE 162
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 31.5 bits (71), Expect = 0.17
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 295 GGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
G+G+ E + D+ E +K + EL E
Sbjct: 134 KGDGDYE-LATDVSNDDFLWERIKKS--EAELLAE 165
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 164
Score = 30.5 bits (68), Expect = 0.26
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
EK++E ++EEE L+ A+ + ++ LK
Sbjct: 134 EKILELPLNEEEMALLNAS--AKAVR-ATLDTLK 164
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.3 bits (70), Expect = 0.27
Identities = 11/76 (14%), Positives = 37/76 (48%)
Query: 277 WKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKR 336
+ + + K + + E ++ E M+++E+ + K++ E + +R +L +
Sbjct: 202 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 261
Query: 337 KKKKVSKERTKLQEKM 352
++++ + + QE++
Sbjct: 262 EQERTLALKLQEQEQL 277
Score = 30.5 bits (68), Expect = 0.42
Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 254 EIQECCKDIRVLGRKDVRNLLKWWKVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEE 313
+ + + R + K+LH+ + + E+ E++ +E K + ++M+ +
Sbjct: 197 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 256
Query: 314 KELMKATKEIEELKDEERRE-----LKRKKKKVSKERTKLQEKM 352
+L+K + LK +E+ + +++ + + E LQ KM
Sbjct: 257 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 30.6 bits (68), Expect = 0.31
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
E+VV E+D++E + + E +K + E+K
Sbjct: 136 EEVVSIELDKDEIIAFRKS--AEIIK-KYCEEVK 166
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 30.6 bits (68), Expect = 0.32
Identities = 6/34 (17%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
V+ ++ ++E +K + + L + +++LK
Sbjct: 141 TSVINQKLKDDEVAQLKKS--ADTLW-DIQKDLK 171
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 169
Score = 30.2 bits (67), Expect = 0.34
Identities = 7/32 (21%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 302 EKVVEDEMDEEEKELMKAT-----KEIEELKD 328
++V++ + EE+E ++ + K + E+K+
Sbjct: 138 QEVLQFNLTPEEEEALRFSAEQVKKVLNEVKN 169
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 174
Score = 30.2 bits (67), Expect = 0.39
Identities = 8/34 (23%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
E+V+E E++EEEK+ + + ++++ + +
Sbjct: 139 ERVIELELNEEEKKQFQKS--VDDVM-ALNKAVA 169
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase
{Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Length = 170
Score = 30.2 bits (67), Expect = 0.42
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKD 328
+ + ++E +K + E LK+
Sbjct: 139 NNTINTPVSDKELAALKRS--AETLKE 163
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 30.2 bits (67), Expect = 0.44
Identities = 5/35 (14%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 302 EKVVEDEMDEEEKELMKAT-KEIEELKDEERRELK 335
++++E + +E + M+ + ++++ ++ EL+
Sbjct: 136 KQIIESPLSADELKKMQDSAATLKKVLNDGLAELE 170
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 29.8 bits (66), Expect = 0.48
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKK 338
E+++E ++EEE E + + LK E+ ++
Sbjct: 138 ERILELNLNEEELEAFRKS--ASILK-NAINEITAEE 171
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 29.7 bits (66), Expect = 0.59
Identities = 4/27 (14%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKD 328
E++ E +D+ + +L++ + + + +
Sbjct: 134 EQIYEINLDQADLDLLQKS--AKIVDE 158
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.1 bits (65), Expect = 0.59
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 282 DEKTEKEKEE-EKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKK 340
+ + EE +K+ EE K E E+ + E + +E+ + EE + K+
Sbjct: 37 PRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 96
Query: 341 VSKERTKLQEKMNLKML 357
++ + ++ L
Sbjct: 97 KLAQKMESNKENREAHL 113
Score = 27.5 bits (61), Expect = 2.1
Identities = 12/74 (16%), Positives = 27/74 (36%)
Query: 278 KVLHDEKTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRK 337
++L ++E E E EE ++ ++ +++ + E L+ K
Sbjct: 64 ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 123
Query: 338 KKKVSKERTKLQEK 351
K + R + K
Sbjct: 124 DKHAEEVRKNKELK 137
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 29.4 bits (65), Expect = 0.63
Identities = 5/34 (14%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
+V+ ++ E++ ++ + L + +++LK
Sbjct: 138 SNIVKMKLKPNEEQQLQKS--ATTLW-DIQKDLK 168
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 29.4 bits (65), Expect = 0.71
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDE 329
E+V+E +++ EEK I E K
Sbjct: 136 EQVIELQLNSEEKAKFDEA--IAETKRM 161
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
1583]}
Length = 163
Score = 29.4 bits (65), Expect = 0.74
Identities = 4/32 (12%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 302 EKVVEDEMDEEEKELMKAT-----KEIEELKD 328
++ +E+E + + + +E+ D
Sbjct: 130 LAETTLDLTTDEQEKLLQSRDYIQQRFDEIVD 161
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 29.1 bits (64), Expect = 0.85
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDE 329
+V+E E++++EK + LK
Sbjct: 137 REVIEIELNDDEKNRFHHS--AATLKSV 162
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.5 bits (66), Expect = 0.98
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 298 GEEEEKVVE--DEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSKER 345
G E EK+++ E+ ++ EL++ + L + R EL+ +++ +R
Sbjct: 439 GLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKR 488
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
casei [TaxId: 1582]}
Length = 172
Score = 29.0 bits (64), Expect = 1.00
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 302 EKVVEDEMDEEEKELMKATKEIEELKDEERRELK 335
+ ++E + + E+E M+ + +LK
Sbjct: 137 QNILEIPLTDHEEESMQKS--ASQLKKVLTDAFA 168
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 29.2 bits (65), Expect = 1.1
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 284 KTEKEKEEEKEGGEGEEEEKVVEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
K K++ G E EK ++ + E E+ + E EE ++++K K+ +
Sbjct: 7 KVSKKELNSNHDGADETSEKEQQEAI-EHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQ 65
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 28.3 bits (62), Expect = 1.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 297 EGEEEEKVVEDEMDEEEKELMKATKEIEELKDE 329
V+ M EE+ L+K + + L +
Sbjct: 136 GESGITDFVKVNMTAEEEGLLKKS--ADTLWNM 166
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 28.2 bits (62), Expect = 2.1
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 396 ADSDEEHIDIVPKKIKYNVEKSELDDSGLYYKNPDDSDLEFESSSEDENDVEKKLVEEEF 455
A D I+ K I VE +++ GLY +S ++ S + + E
Sbjct: 1 AQLDSIGFSIIKKCIHA-VETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEIC 59
Query: 456 DTDEEDGLGKLLRYWEKSYNAASLVNEYRKKRVEI 490
E + L+ + + ++ ++++ ++
Sbjct: 60 AEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKA 94
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 27.9 bits (61), Expect = 3.2
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 11 IAITRELKTWKVDVVLHDGSPNVGMNWVYDAYHQCCL 47
+ L+ V + + + +VG W ++ Y
Sbjct: 20 LYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARC 56
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.9 bits (61), Expect = 3.5
Identities = 4/48 (8%), Positives = 15/48 (31%), Gaps = 8/48 (16%)
Query: 308 EMDEEEKELMKATKEIEELKD--------EERRELKRKKKKVSKERTK 347
+ K+ + E+E L + + + ++ + +
Sbjct: 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 28.0 bits (62), Expect = 3.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 310 DEEEKELMKATKEIEELKDEER---RELKRKKKKVSKERTKLQEKMN 353
E L++ K +E L + ER R L R + + +++
Sbjct: 61 HPEFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVS 107
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 26.4 bits (58), Expect = 5.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 305 VEDEMDEEEKELMKATKEIEELKDEERRELKRKKKKVSK 343
+ D + E +E + A + L +EER EL ++++K
Sbjct: 96 MFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAK 134
>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 173
Score = 26.5 bits (57), Expect = 6.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 303 KVVEDEMDEEEKELMKATKEIEELKDEERRELKR 336
KVV +EE + K + EL ++ + KR
Sbjct: 139 KVVRQLTEEEIEWTKKNAEIYVELAEKHIKGRKR 172
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 175
Score = 26.3 bits (58), Expect = 7.6
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 296 GEGEEEEKVVEDEMDEEEKELMKATKEIEELKD-------EERRELKRKKKKVSKERTKL 348
G+ ++ V E++ I+ +K R+E++ + K
Sbjct: 75 GKEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEIRVDPFRTGFGHAKE 134
Query: 349 QEKMNL 354
++L
Sbjct: 135 PGSIDL 140
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Synechococcus sp., strain pcc
6301 [TaxId: 1131]}
Length = 109
Score = 25.6 bits (56), Expect = 8.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 517 KKKLETLMEAPDVSDAEKARNIR 539
+++ ET P +SD + A I
Sbjct: 8 ERRFETFSYLPPLSDRQIAAQIE 30
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 26.6 bits (58), Expect = 9.8
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 312 EEKELMKATKEIEELKDEERRELKRKKKKVSKERTKLQEKMNLKMLLKGDLGP 364
E+++ A + IE+ +E EL+ + K + +R + + + +L+M+ +
Sbjct: 251 REEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCS 303
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.373
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,053,473
Number of extensions: 101807
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 127
Length of query: 547
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,171,896
Effective search space: 535556472
Effective search space used: 535556472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)