Query psy3135
Match_columns 229
No_of_seqs 115 out of 1083
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:21:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14342 lipoate-protein ligas 100.0 3.8E-66 8.2E-71 438.2 21.4 203 1-217 2-209 (213)
2 PRK14348 lipoate-protein ligas 100.0 8.9E-66 1.9E-70 438.1 22.4 210 4-213 2-220 (221)
3 PRK14345 lipoate-protein ligas 100.0 1.2E-65 2.6E-70 441.0 21.9 202 1-216 8-220 (234)
4 PRK14343 lipoate-protein ligas 100.0 1E-64 2.2E-69 433.8 21.9 211 3-226 13-233 (235)
5 PRK14341 lipoate-protein ligas 100.0 1E-64 2.2E-69 429.8 21.4 198 3-212 3-212 (213)
6 PRK14344 lipoate-protein ligas 100.0 6.7E-64 1.5E-68 426.1 21.6 201 4-213 18-223 (223)
7 PRK14347 lipoate-protein ligas 100.0 1.9E-63 4.1E-68 420.0 22.0 197 4-212 2-209 (209)
8 COG0321 LipB Lipoate-protein l 100.0 1E-63 2.2E-68 419.5 19.6 201 4-216 10-215 (221)
9 PRK14346 lipoate-protein ligas 100.0 2.7E-63 5.9E-68 423.3 21.8 196 4-212 2-229 (230)
10 PRK14349 lipoate-protein ligas 100.0 8.7E-63 1.9E-67 417.8 21.2 196 7-215 2-208 (220)
11 TIGR00214 lipB lipoate-protein 100.0 3.3E-58 7.2E-63 382.1 17.6 171 37-212 9-184 (184)
12 KOG0325|consensus 100.0 1.8E-50 4E-55 337.4 19.6 215 4-220 6-221 (226)
13 PRK03822 lplA lipoate-protein 100.0 2.8E-28 6E-33 220.7 20.8 201 3-215 2-216 (338)
14 PRK14061 unknown domain/lipoat 100.0 6.6E-28 1.4E-32 228.7 20.8 203 1-216 224-441 (562)
15 TIGR00545 lipoyltrans lipoyltr 100.0 3.4E-27 7.4E-32 212.7 19.8 198 7-214 3-212 (324)
16 COG0095 LplA Lipoate-protein l 99.9 2.1E-24 4.7E-29 188.0 18.1 205 5-221 2-224 (248)
17 KOG3159|consensus 99.8 2.9E-20 6.2E-25 162.8 14.7 209 5-224 11-235 (336)
18 PF03099 BPL_LplA_LipB: Biotin 99.6 4E-15 8.6E-20 115.3 9.8 110 54-166 1-125 (125)
19 PRK08330 biotin--protein ligas 99.5 2.9E-13 6.3E-18 117.1 12.1 122 81-212 41-167 (236)
20 PRK05935 biotin--protein ligas 98.7 2.6E-07 5.7E-12 77.7 12.7 126 81-214 43-178 (190)
21 PTZ00275 biotin-acetyl-CoA-car 98.4 2.9E-06 6.2E-11 75.6 12.2 120 84-212 72-215 (285)
22 TIGR00121 birA_ligase birA, bi 98.4 2.4E-06 5.2E-11 73.9 10.8 123 80-212 38-171 (237)
23 PTZ00276 biotin/lipoate protei 98.4 3.8E-06 8.2E-11 73.3 11.6 124 80-212 45-180 (245)
24 COG0340 BirA Biotin-(acetyl-Co 98.4 2.4E-06 5.3E-11 74.2 9.6 125 80-213 34-169 (238)
25 PRK11886 bifunctional biotin-- 98.1 4.2E-05 9.1E-10 68.9 11.4 123 81-212 116-250 (319)
26 PRK08477 biotin--protein ligas 98.0 9.4E-05 2E-09 63.2 11.8 114 80-212 40-160 (211)
27 PRK06955 biotin--protein ligas 97.7 0.00077 1.7E-08 60.4 12.1 129 80-212 77-227 (300)
28 PRK13325 bifunctional biotin-- 97.4 0.0015 3.2E-08 63.9 11.1 122 80-212 122-256 (592)
29 PF04017 DUF366: Domain of unk 95.7 0.1 2.2E-06 43.4 9.3 83 112-211 87-171 (183)
30 KOG1536|consensus 94.8 0.32 7E-06 46.9 10.7 123 75-212 420-568 (649)
31 COG2029 Uncharacterized conser 93.1 0.79 1.7E-05 37.8 8.5 76 120-211 99-175 (189)
32 KOG0325|consensus 88.7 0.22 4.8E-06 42.7 1.4 32 72-104 141-172 (226)
33 PF13823 ADH_N_assoc: Alcohol 48.9 12 0.00026 20.7 1.3 11 86-96 4-14 (23)
34 COG3127 Predicted ABC-type tra 34.6 16 0.00035 36.9 0.6 134 89-228 529-698 (829)
35 cd04869 ACT_GcvR_2 ACT domains 32.8 1.6E+02 0.0035 20.0 8.3 59 67-129 17-80 (81)
36 COG2961 ComJ Protein involved 26.7 91 0.002 27.7 3.9 22 191-212 243-264 (279)
37 PRK12461 UDP-N-acetylglucosami 25.6 1.5E+02 0.0032 25.9 5.1 59 150-213 158-218 (255)
38 PRK11835 hypothetical protein; 25.0 2.1E+02 0.0047 22.0 5.1 61 14-83 50-110 (114)
39 COG2333 ComEC Predicted hydrol 23.9 1.2E+02 0.0026 27.3 4.2 43 50-94 235-280 (293)
No 1
>PRK14342 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=3.8e-66 Score=438.23 Aligned_cols=203 Identities=32% Similarity=0.542 Sum_probs=187.4
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEe
Q psy3135 1 MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT 80 (229)
Q Consensus 1 m~~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~ 80 (229)
|++.+.++++|+++|+++|++|+++++++.. ..+|+|||||||||||+|+++..+ +.+...+++|+++
T Consensus 2 ~~~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~------~~~d~llllEH~pVyT~Gr~~~~~------~ll~~~~~~v~~~ 69 (213)
T PRK14342 2 MQNKLIVRQLGLQPYEPVWQAMQEFTDTRDE------ETPDEIWLVEHPPVFTQGQAGKPE------HILNPGDIPVVQS 69 (213)
T ss_pred CCCeEEEEeCCCcCHHHHHHHHHHHHHHHhC------CCCCEEEEEcCCCCccCCCCCChh------hccCCCCCcEEEe
Confidence 4577999999999999999999999988764 467999999999999999998332 2234568999999
Q ss_pred ccCCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEE
Q psy3135 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYIT 155 (229)
Q Consensus 81 ~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it 155 (229)
+|||++|||||||||+|||+||++.+.++++|++.||++ +.|||++.+.++.+|||+++ +||||||+++++|+|
T Consensus 70 ~RGG~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~~gi~~~~~~~~~GVWv~~-~KIaaIGv~v~r~vT 148 (213)
T PRK14342 70 DRGGQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYVDG-KKIASLGLRIRRGCS 148 (213)
T ss_pred cCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcCcccC-CEEEEEEEeEeccee
Confidence 999999999999999999999999999999999999998 89999999989889999999 999999999999999
Q ss_pred EEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcccccc
Q psy3135 156 HHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE 217 (229)
Q Consensus 156 ~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~ 217 (229)
+|||||||++||++|+.|+|||++++.||||++ ++.++++++|++.++++|++.|+++..+
T Consensus 149 ~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~~~~~f~~~f~~~~~~ 209 (213)
T PRK14342 149 FHGLALNVNMDLSPFLRINPCGYAGLEMTQLSD-LGGPATVDEVAPRLLAELLALLGYNDQE 209 (213)
T ss_pred ecceeEecCCCchhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCCcchh
Confidence 999999999999999999999999999999987 5889999999999999999999977554
No 2
>PRK14348 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=8.9e-66 Score=438.13 Aligned_cols=210 Identities=36% Similarity=0.608 Sum_probs=189.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 4 QVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 4 ~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
...++++|+++|.++|++|+++++++.+.+......+|+|||||||||||+|+++...+...+.+.+++.|++|++++||
T Consensus 2 ~~~~~~lg~~~Y~~a~~~q~~~~~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~RG 81 (221)
T PRK14348 2 KTITTDWELIPYSEAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRG 81 (221)
T ss_pred EEEEEecCCcCHHHHHHHHHHHHHHHHhhhhcCCCCCCEEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCCC
Confidence 35678999999999999999988877542211112369999999999999999996655545667788899999999999
Q ss_pred CceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCC----CCceeeeceeeeCcE
Q psy3135 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDD----EYKVCAIGVHSSLYI 154 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~----~rKIasiG~~i~~~i 154 (229)
|++|||||||||+|||+||++++.++++|++.||++ ++|||++.+.++.+|||+++ ++||||||+++++|+
T Consensus 82 G~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~KIaaIGv~v~r~v 161 (221)
T PRK14348 82 GDITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCASYGVVAGRLEKATGVWLEGDTSRARKICAIGVRSSHYV 161 (221)
T ss_pred CceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCCEEecCCCCCCCcEEEEeEEeccce
Confidence 999999999999999999999999999999999998 88999999988899999983 289999999999999
Q ss_pred EEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy3135 155 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 213 (229)
Q Consensus 155 t~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 213 (229)
|||||||||++||++|+.|+|||++++.||||++++|.++++++|++.++++|++.|+-
T Consensus 162 T~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~~~~ 220 (221)
T PRK14348 162 TMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELLAALLS 220 (221)
T ss_pred eecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999888999999999999999999999863
No 3
>PRK14345 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.2e-65 Score=440.98 Aligned_cols=202 Identities=38% Similarity=0.630 Sum_probs=187.0
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEe
Q psy3135 1 MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT 80 (229)
Q Consensus 1 m~~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~ 80 (229)
|++++.++++|+++|+++|++|+++++++.+ +..+++|||||||||||+|+++..+ .+...+++|+++
T Consensus 8 ~~~~~~~~~lG~~~Y~~~~~~Q~~l~~~~~~-----~~~~d~llllEH~pVyT~Gr~~~~~-------~l~~~~i~v~~t 75 (234)
T PRK14345 8 STMPIEVRRLGLVDYQEAWDLQRELADARVA-----GEGPDTLLLLEHPAVYTAGKRTEPH-------ERPTDGTPVVDV 75 (234)
T ss_pred cCCceEEEECCCcCHHHHHHHHHHHHHHHhc-----CCCCCEEEEEcCCCCccCCCCCCcc-------ccccCCCcEEEe
Confidence 3466899999999999999999999999886 5578999999999999999998332 233458999999
Q ss_pred ccCCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeC------CCCceeeecee
Q psy3135 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLD------DEYKVCAIGVH 149 (229)
Q Consensus 81 ~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~------~~rKIasiG~~ 149 (229)
+|||++|||||||||+|||+||++ +.++++|++.||++ ++|||++.+.++++||||+ + +||||||++
T Consensus 76 dRGG~iTyHGPGQLV~YpIldL~~-~~~v~~yv~~LE~~vI~~l~~~gi~a~~~~~~~GVWv~~~~~~~~-~KIaaIGv~ 153 (234)
T PRK14345 76 DRGGKITWHGPGQLVGYPIIKLAE-PLDVVDYVRRLEEALIAVCADLGLNAGRVDGRSGVWVPADGGRPD-RKIAAIGIR 153 (234)
T ss_pred cCCCceeEeCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCeEEECCCCCCCc-ceEEEEEee
Confidence 999999999999999999999998 68999999999998 8999999998888999997 5 999999999
Q ss_pred eeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhccccc
Q psy3135 150 SSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 216 (229)
Q Consensus 150 i~~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 216 (229)
+++|+|+|||||||++||++|+.|+|||++++.||||+++++.++++++|++.++++|++.|+....
T Consensus 154 v~r~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~f~~~~~ 220 (234)
T PRK14345 154 VSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRTVTVAEVVDPVAAALCDALDGRLP 220 (234)
T ss_pred eccceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCCCCHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999999999999999999988999999999999999999999998764
No 4
>PRK14343 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1e-64 Score=433.77 Aligned_cols=211 Identities=24% Similarity=0.410 Sum_probs=189.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEecc
Q psy3135 3 KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (229)
Q Consensus 3 ~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (229)
.++.++++|+++|.++|++|+++++++.. ..+|+|||||||||||+|++...++.. ....|++|++++|
T Consensus 13 ~~~~v~~lG~v~Y~~a~~~q~~~~~~~~~------~~~d~llllEHppVyT~G~~~~~~~ll-----~~~~~i~v~~tdR 81 (235)
T PRK14343 13 LPVTVRWRGREPYEACFDAMRAFTDARTA------DTPDEIWLVEHPPVYTLGQAGDPAHLL-----VADSGIPLVKVDR 81 (235)
T ss_pred CceEEEeCCCcCHHHHHHHHHHHHHHHhC------CCCCEEEEECCCCCeeCCCCCChhhcc-----CCcCCCCEEEeCC
Confidence 45889999999999999999999998764 457999999999999999998433221 1346899999999
Q ss_pred CCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeC-----CCCceeeeceeeeC
Q psy3135 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLD-----DEYKVCAIGVHSSL 152 (229)
Q Consensus 83 GGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~-----~~rKIasiG~~i~~ 152 (229)
||++|||||||||+|||+||++++.++++|++.||++ +.|||+++++++++|||++ + +||||||+++++
T Consensus 82 GG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVwv~~~~~~~-~KIaaIGv~v~r 160 (235)
T PRK14343 82 GGQITYHGPGQVVAYLLLDLRRRKLMVRELVTRIEQAVIDTLAAYNLASERKAGAPGIYVASGPHQG-AKIAALGLKIRN 160 (235)
T ss_pred CCceeEeCCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCeEEEeCCCCCC-CeEEEEeeeeec
Confidence 9999999999999999999999999999999999997 8999999999999999998 6 999999999999
Q ss_pred cEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhccccccccchhHHhh
Q psy3135 153 YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKH 226 (229)
Q Consensus 153 ~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~~~~~~ 226 (229)
|+|||||||||++||++|+.|+|||++|+.||||+ ++|.++++++|++.+++.|++.|+......+++..-+|
T Consensus 161 ~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~-~lg~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~~~~~~ 233 (235)
T PRK14343 161 GCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMA-SLGVAADWADVAQTLARRLIANLDGAAAAADLPQAAAQ 233 (235)
T ss_pred ceeecccEEEeCCCchhhCcEECCCCCCCcEeeHH-HhCCCCCHHHHHHHHHHHHHHHhCcccccccCcccccc
Confidence 99999999999999999999999999999999995 48999999999999999999999987765555444333
No 5
>PRK14341 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1e-64 Score=429.85 Aligned_cols=198 Identities=35% Similarity=0.575 Sum_probs=183.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEecc
Q psy3135 3 KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (229)
Q Consensus 3 ~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (229)
+.+.++++|+++|+++|++|+++++++.+ +..+++|||||||||||+|+++..+ +.+...+++|++++|
T Consensus 3 ~~~~~~~~g~~~Y~~~~~~q~~~~~~~~~-----~~~~~~llllEH~pVyT~G~~~~~~------~ll~~~~i~v~~t~R 71 (213)
T PRK14341 3 PVEWRISDGLVPYPEALAFMEARVAAIAA-----GTADELVWLLEHPPLYTAGTSAKAE------DLLDPDRFPVYETGR 71 (213)
T ss_pred ceEEEecCCccCHHHHHHHHHHHHHHHhc-----CCCCCEEEEECCCCCeeCCCCCChh------hccCCCCCCEEEeCC
Confidence 45677889999999999999999999876 6678899999999999999998332 334566999999999
Q ss_pred CCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCC-------CCceeeeceee
Q psy3135 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDD-------EYKVCAIGVHS 150 (229)
Q Consensus 83 GGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~-------~rKIasiG~~i 150 (229)
||++|||||||||+|||+||++++.++++|++.||++ +.|||++.+.++.+|||+++ ++||||||+++
T Consensus 72 GG~iTyHGPGQlV~YpIl~L~~~~~~v~~yv~~lE~~iI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~~~~KIaaIGv~v 151 (213)
T PRK14341 72 GGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAFNIRGERREDRVGVWVRRPDKGSGAEDKIAAIGVRL 151 (213)
T ss_pred CcceeEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHhCCceEEcCCCCeEEecCccCCCCCCCcEEEEeeeE
Confidence 9999999999999999999999999999999999988 89999999999999999984 28999999999
Q ss_pred eCcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 151 SLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 151 ~~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
++|+|+|||||||++||++|+.|+|||++++.||||++ +|.+++++++++.++++|++.|+
T Consensus 152 ~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~l~~~f~~~f~ 212 (213)
T PRK14341 152 RRWVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVD-LGLPVTMDDVDAALKKAFEKVFG 212 (213)
T ss_pred ecceeccceEEEecCChhhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999987 79999999999999999999995
No 6
>PRK14344 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=6.7e-64 Score=426.08 Aligned_cols=201 Identities=31% Similarity=0.581 Sum_probs=181.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 4 QVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 4 ~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
-+.+.++|+++|+++|++|+++++++... +..+|++||||||||||+|+++..++...+ .++.+++|++++||
T Consensus 18 ~~~~~~lg~v~Y~~a~~~Q~~~~~~~~~~----~~~~d~llllEH~pVyT~G~~~~~~~l~~~---~~~~~~~v~~~~RG 90 (223)
T PRK14344 18 AILFEPDNIVPFEDAWKWQKEWQQALIED----PSNPQAVWLLEHQLCYTLGRGASEDNLLFS---LNNPPADVFRIDRG 90 (223)
T ss_pred eEEEecCCccCHHHHHHHHHHHHHHHhcC----CCCCCEEEEECCCCCeeCCCCCChhhccCc---cccCCCcEEEcCCC
Confidence 37788899999999999999999887652 345799999999999999999843332111 12468999999999
Q ss_pred CceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEEEEe
Q psy3135 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHG 158 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~HG 158 (229)
|++|||||||||+|||+||++++.++++|++.||++ ++|||++.+.++.+|||+++ +||||||+++++|+|+||
T Consensus 91 G~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~~~~~GVWv~~-~KIaaIGv~v~r~vT~HG 169 (223)
T PRK14344 91 GEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERLDGLTGVWIGN-KKVASIGIGCRRWITQHG 169 (223)
T ss_pred ceeeEECCCcEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcEEcCC-CeEEEEeEeEecceeecc
Confidence 999999999999999999999999999999999998 88999999999899999999 999999999999999999
Q ss_pred eeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy3135 159 LAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 213 (229)
Q Consensus 159 ~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 213 (229)
|||||++||++|+.|+||||+++.||||++ ++.+++++++++.++++|++.|++
T Consensus 170 ~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~l~~~f~~~f~~ 223 (223)
T PRK14344 170 FSLNVDCDLEGFNKIVPCGLEGCQVGRLSD-WIPGLNIKEVKPLLKKSLQERFGL 223 (223)
T ss_pred eEEecCCCccccCcEEcCCCCCCcEeeHHH-HcCCCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987 568999999999999999999963
No 7
>PRK14347 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.9e-63 Score=419.99 Aligned_cols=197 Identities=34% Similarity=0.554 Sum_probs=179.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 4 QVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 4 ~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
.+.++++|+++|+++|++|+++++++.+ +..+|+|||+|||||||+|++... .+.+...+++|++++||
T Consensus 2 ~~~~~~~g~~~Y~~a~~~q~~~~~~~~~-----~~~~d~llllEH~pVyT~G~~~~~------~~ll~~~~i~v~~t~RG 70 (209)
T PRK14347 2 IRFITIPDFADYQVTLKLMEDYVNKVIS-----DHEPEIVYLVEHSEVYTAGTNYKQ------EELLNYGDIPVIYTGRG 70 (209)
T ss_pred eeEEecCCccCHHHHHHHHHHHHHHHhc-----CCCCCEEEEEcCCCCeeCCCCCCh------hhcccccCCcEEEecCC
Confidence 3556899999999999999999999876 667899999999999999998832 23345679999999999
Q ss_pred CceeEecCCCeEEEEeeecCCC--CCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCC----CCceeeeceeeeC
Q psy3135 84 GLITFHGPGQLVAYPIINLKHF--TPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDD----EYKVCAIGVHSSL 152 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~--~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~----~rKIasiG~~i~~ 152 (229)
|++|||||||||+|||+||+++ +.++++|++.||++ +.|||++.+.++.+|||++. ++||||||+++++
T Consensus 71 G~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r 150 (209)
T PRK14347 71 GKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYFGIKAYIIKDKVGIWVKVRKDEFAKIAAIGVRVRK 150 (209)
T ss_pred cceEEeCCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHHcCCceEEcCCCCEEEEcCCCCCCceEEEEeEEEec
Confidence 9999999999999999999864 46999999999998 89999999989899999972 2899999999999
Q ss_pred cEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 153 YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 153 ~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
|+|+|||||||++||++|+.|+||||+++.||||++ +|.+++++++++.++++|++.|.
T Consensus 151 ~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~l~~~f~~~f~ 209 (209)
T PRK14347 151 WVTYHGVAINISTDLSKFSGIIPCGLENSLVTSLNQ-LGIHVEMSEFDKIIQTEFNKIFK 209 (209)
T ss_pred ceeecceEEEeCCCccccCcEECCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999986 79999999999999999999884
No 8
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=100.00 E-value=1e-63 Score=419.46 Aligned_cols=201 Identities=35% Similarity=0.592 Sum_probs=186.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 4 QVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 4 ~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
.+.++.+|++||.++|+.|+.+.+++.. +..+|++|++|||||||.|+.+.. ++.+...++||++++||
T Consensus 10 ~~~~~~~Gl~~Y~~a~~~m~~~~~~r~~-----~~~~d~i~lvEHppVyT~G~~~~~------e~l~~~~~ipVv~~~RG 78 (221)
T COG0321 10 IILVRELGLVDYQEAWQLMETFTDARAD-----GGTPDEIWLVEHPPVYTAGQAGKA------EHLLMPDDIPVVQTDRG 78 (221)
T ss_pred chhhhhcCcccHHHHHHHHHHHHHHhhc-----CCCCCeEEEEecCCeeecCccCCH------hhcccCCCCCEEEecCC
Confidence 5788899999999999999999999975 667999999999999999988722 22344688999999999
Q ss_pred CceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEEEEe
Q psy3135 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHG 158 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~HG 158 (229)
|++|||||||+|+|||+||++++.++++|++.||++ +.|||+++++++++||||++++||||||+++++|+||||
T Consensus 79 GqvTyHGPGQ~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~~~i~~~~~~~~~GVwV~~~~KIAaiGirirr~vs~HG 158 (221)
T COG0321 79 GQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAEYGIEAERRPDRPGVWVEEERKIAAIGIRIRRGVTFHG 158 (221)
T ss_pred ceeEEeCCCcEEEEEEEecccccccHHHHHHHHHHHHHHHHHHcCCcccccCCCCeEEecCCceEEEEEEEEecccceee
Confidence 999999999999999999999988999999999999 999999999999999999955999999999999999999
Q ss_pred eeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhccccc
Q psy3135 159 LAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 216 (229)
Q Consensus 159 ~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 216 (229)
+||||++||++|++|+|||+.+..||||.++ +.++++++|...++++|++.|+....
T Consensus 159 lALNv~~DL~~F~~I~PCG~~~~~~tsl~d~-~~~v~~~~V~~~l~~~~~~~l~~~~~ 215 (221)
T COG0321 159 LALNVNMDLSPFNRIVPCGYAGMEVTSLSDL-GPPVTVDEVAKALVAAFAKLLGPKLI 215 (221)
T ss_pred eEEeccCCchhccceeccccCCCceeEHHHh-CCCCcHHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999994 66799999999999999999998753
No 9
>PRK14346 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.7e-63 Score=423.32 Aligned_cols=196 Identities=30% Similarity=0.492 Sum_probs=180.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 4 QVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 4 ~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
.+.++++|+++|.++|++|+++++.+.. ..+|+|||||||||||+|+++..+ +.+...+++|++++||
T Consensus 2 ~~~~~~lG~v~Y~~a~~~q~~~~~~~~~------~~~d~llllEHppVyT~G~~~~~~------~ll~~~~i~v~~tdRG 69 (230)
T PRK14346 2 AMDRRMLGRVDYLATVQAMQAFTAERTP------ETPDELWICEHPPVYTQGLAGKAD------HVLNPGDIPVVATNRG 69 (230)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHhhC------CCCCEEEEEcCCCCeeCCCCCChh------hccCCCCCcEEEeCCC
Confidence 4678999999999999999999988764 468999999999999999998332 3345678999999999
Q ss_pred CceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCC-------------------
Q psy3135 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDD------------------- 139 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~------------------- 139 (229)
|++|||||||||+|||+||++++.++++|++.||++ +.|||++.+.++++||||+.
T Consensus 70 G~iTyHGPGQlV~YpildL~~~~~~vr~yv~~lE~~vI~~l~~~gi~~~~~~~~~GVWv~~~~~~~~~~~~~~~~~~~~~ 149 (230)
T PRK14346 70 GQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHFGVTGHRVAGAPGIYVRLDDPFSHAALPQRPQKRGGG 149 (230)
T ss_pred cceeEECCCeEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHhCCceEEcCCCCEEEEcCCCccccccccccccccccc
Confidence 999999999999999999999999999999999998 88999999999999999971
Q ss_pred --------CCceeeeceeeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhh
Q psy3135 140 --------EYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVF 211 (229)
Q Consensus 140 --------~rKIasiG~~i~~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f 211 (229)
++||||+|+++++|+|+|||||||++||++|+.|+||||+++.||||++ +|.+++++++++.++++|++.|
T Consensus 150 ~~~~~~~~~~KIaAiGv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~~~~ 228 (230)
T PRK14346 150 APQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLST-IGVQTTWDEAASVLGQQLARYL 228 (230)
T ss_pred cccccccccceEEEEeeEEecceeecceeEEcCCChhhhCcEECCCCCCCceeeHHH-hCCCCCHHHHHHHHHHHHHHHh
Confidence 1699999999999999999999999999999999999999999999974 8999999999999999999998
Q ss_pred c
Q psy3135 212 E 212 (229)
Q Consensus 212 ~ 212 (229)
+
T Consensus 229 ~ 229 (230)
T PRK14346 229 A 229 (230)
T ss_pred C
Confidence 4
No 10
>PRK14349 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=8.7e-63 Score=417.77 Aligned_cols=196 Identities=27% Similarity=0.435 Sum_probs=179.8
Q ss_pred EEEcCC-CChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccCCc
Q psy3135 7 LVRLGL-VSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGL 85 (229)
Q Consensus 7 v~~~G~-~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg 85 (229)
+.++|. ++|+++|++|+++++++.. ..+|+|||||||||||+|+++..+ +.+...+++|++++|||+
T Consensus 2 ~~~~~~~~~Y~~a~~~q~~~~~~~~~------~~~d~llllEH~pVyT~G~~~~~~------~ll~~~~i~vv~t~RGG~ 69 (220)
T PRK14349 2 IKWLARPADYASVWDAMKAFTAARGP------GTADEIWLCEHAPVYTLGQAGRPE------HLLNPGLIPVVHCDRGGQ 69 (220)
T ss_pred eeeccCccCHHHHHHHHHHHHHHHhC------CCCCEEEEEcCCCCeeCCCCCChh------hccCCCCCcEEEecCCcc
Confidence 456666 9999999999999998874 457999999999999999998433 234566899999999999
Q ss_pred eeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCce-EEeeCCCceEEeCC----CCceeeeceeeeCcEE
Q psy3135 86 ITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLN-AGLIPKYTGVFLDD----EYKVCAIGVHSSLYIT 155 (229)
Q Consensus 86 ~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~-a~~~~~~~gv~v~~----~rKIasiG~~i~~~it 155 (229)
+|||||||||+|||+||++.+.++++|++.||++ ++|||+ +.+.++++||||++ ++||||+|+++++|+|
T Consensus 70 iTyHGPGQLV~YpIldL~~~~~~vr~yv~~LE~~~I~~l~~~gi~~a~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r~vT 149 (220)
T PRK14349 70 VTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYA 149 (220)
T ss_pred eEEeCCCcEEEEEEEEcccCCCCHHHHHHHHHHHHHHHHHHhCCcceeecCCCCcEEeCCCCCCCceEEEEeeEEeccee
Confidence 9999999999999999999999999999999998 889999 99989999999983 2899999999999999
Q ss_pred EEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcccc
Q psy3135 156 HHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECEC 215 (229)
Q Consensus 156 ~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~ 215 (229)
+|||||||++||++|+.|+||||+++.||||++ +|.+++++++++.++++|++.|+.+.
T Consensus 150 ~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~l~~~f~~~f~~~~ 208 (220)
T PRK14349 150 YHGLALNIDMDLSPFLGINPCGYEGLRTVDLAA-CGVRTSVERAGELLAAQLARAHGQAV 208 (220)
T ss_pred ecceeEEecCCchhhCcEEcCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999976 79999999999999999999998875
No 11
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=100.00 E-value=3.3e-58 Score=382.12 Aligned_cols=171 Identities=36% Similarity=0.642 Sum_probs=154.1
Q ss_pred CCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccCCceeEecCCCeEEEEeeecCCCCCCHHHHHHHH
Q psy3135 37 SNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSI 116 (229)
Q Consensus 37 ~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~l 116 (229)
+..+|+||+||||||||+|+++..++.. ... ...+++|++++|||++|||||||||+|||+||++++.++++|++.|
T Consensus 9 ~~~~d~llllEH~pVyT~G~~~~~~~l~-~~~--~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~l 85 (184)
T TIGR00214 9 RQTLDEIMLVEHYPVYTQGQAGKTEHLL-FDP--DIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQL 85 (184)
T ss_pred CCCCCEEEEECCCCCeeCCCCCChhhcc-CCc--CCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHHH
Confidence 4567999999999999999998433321 111 1124459999999999999999999999999999999999999999
Q ss_pred Hhh-----cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcC
Q psy3135 117 EQT-----QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLS 191 (229)
Q Consensus 117 e~~-----~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~ 191 (229)
|++ ++|||++.++++.+|||+++ +||||||+++++|+|+|||||||++||++|+.|+|||++++.||||++ ++
T Consensus 86 E~~~I~~l~~~gi~a~~~~~~~GVWv~~-~KIasIGv~v~r~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~-~~ 163 (184)
T TIGR00214 86 EQTVIITLAELGIEGEPIADATGVWVEG-KKVASLGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQ-FL 163 (184)
T ss_pred HHHHHHHHHHcCCceEEcCCCCeEEecC-CEEEEEEEEEeccEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHH-Hc
Confidence 998 89999999989899999999 999999999999999999999999999999999999999999999987 56
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q psy3135 192 KDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 192 ~~~~~~~v~~~l~~~f~~~f~ 212 (229)
.+++++++++.++++|++.|+
T Consensus 164 ~~~~~~~v~~~~~~~f~~~f~ 184 (184)
T TIGR00214 164 PGATVENVAPLLIKAFAELLG 184 (184)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 899999999999999999985
No 12
>KOG0325|consensus
Probab=100.00 E-value=1.8e-50 Score=337.40 Aligned_cols=215 Identities=45% Similarity=0.711 Sum_probs=193.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 4 QVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 4 ~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
.+.+...|++.|....++|+++++....-+...-...+++++.||+||||+|.+. ..++..++..+.+.|.+++++.||
T Consensus 6 ~~~~~r~g~~~y~~~~~lq~rlvr~~~~~~~s~~~~~p~il~~eh~PvYT~G~rt-~~~~~~~e~~l~~~ga~~~~t~RG 84 (226)
T KOG0325|consen 6 GVETVRAGLVHYHRTLALQNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRT-LDFTLYDESRLYKLGAEFHKTERG 84 (226)
T ss_pred eEEEEEcccchHHhhhHHHHHHHHHhhhcccccCCCCCEEeecccCCeeeecccc-CCcccchhhhhhhcCceEEEeecC
Confidence 4788889999999999999999999854432234578999999999999999775 556556778899999999999999
Q ss_pred CceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeee
Q psy3135 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAIN 162 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~HG~alN 162 (229)
|.+|||||||++.|||+||++++.+.++|+..||++ ..+||++......+||||.+ .|||++|++++++||+||+|||
T Consensus 85 G~iTfHGPgQl~~ypIidL~~f~~~~r~~Vs~le~~c~~~~i~~~~~t~~tgvwV~d-~k~aaiGi~vsr~IT~HGlaLN 163 (226)
T KOG0325|consen 85 GLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLEAACPDFGIKGTASTKDTGVWVGD-AKIAAIGIRVSREITYHGLALN 163 (226)
T ss_pred ceEEEeCCCceEEEEEEEeeccccchhhHHHHHHhhcccccccccccccccceeecC-CeeEEEEEEecCcEeecceEEE
Confidence 999999999999999999999999999999999988 88999865444469999999 8999999999999999999999
Q ss_pred cCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhccccccccc
Q psy3135 163 CDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVEL 220 (229)
Q Consensus 163 v~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~~ 220 (229)
+++||++|++|+|||+.++.+|||.++.+...+..+++.....+|++.|++...+.+.
T Consensus 164 ~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~~~~~~~~~~l~~l~k~f~~~~~~~~~ 221 (226)
T KOG0325|consen 164 VNTDLTYFNHIVPCGIYGRGVTSISKEIRRLVTVEESVAIRLVSLTKVFSCMLQESNE 221 (226)
T ss_pred eccCcchhhccccceeeccccceehhhhccccchhHhHHHHHHHHHHhhhhheecccC
Confidence 9999999999999999999999999989989999999999999999999998776543
No 13
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.96 E-value=2.8e-28 Score=220.71 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=162.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEecc
Q psy3135 3 KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (229)
Q Consensus 3 ~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (229)
..|+++..+..+-.-.||+.+.++..... ..++|++|+++|++++||+| +.+.|++.++|++.||+|+||.+
T Consensus 2 ~~~~~i~s~~~dp~~NlAlEe~Ll~~~~~-------~~~~l~~w~n~p~VvIGr~Q-n~~~Evn~~~~~~~gI~vvRR~S 73 (338)
T PRK03822 2 STLRLLISDSYDPWFNLAVEECIFRQMPA-------TQRVLFLWRNADTVVIGRAQ-NPWKECNTRRMEEDNVRLARRSS 73 (338)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHhcCCC-------CCCEEEEEcCCCeEEECCCC-CHHHHhCHHHHHHcCCcEEEECC
Confidence 45778888888888899999999988753 35789999999999999999 88889999999999999999999
Q ss_pred CCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-cccCceEEeeCCCceEEeC---CCCceeeeceeeeCcEEEEe
Q psy3135 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-QEFSLNAGLIPKYTGVFLD---DEYKVCAIGVHSSLYITHHG 158 (229)
Q Consensus 83 GGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-~~~gi~a~~~~~~~gv~v~---~~rKIasiG~~i~~~it~HG 158 (229)
|||++|||+|++.+++|.+... .+...+...+-++ +.+||+|+.. +++||+++ +++||+|.+++..++..+|+
T Consensus 74 GGGAVyhD~Gnl~~s~i~~~~~--~~~~~~~~~ii~aL~~lGi~a~~~-~rnDi~v~~~~g~kKisGsAq~~~~~~~l~H 150 (338)
T PRK03822 74 GGGAVFHDLGNTCFTFMAGKPE--YDKTISTSIVLNALNSLGVSAEAS-GRNDLVVKTAEGDRKVSGSAYRETKDRGFHH 150 (338)
T ss_pred CCceEEEcCCCcEEEEEeCCCc--cCHHHHHHHHHHHHHHcCCceeEC-CCccEEEecCCCCcEEEEEeeeeeCCeEEEE
Confidence 9999999999999888886432 4554555666666 8999999985 55999995 23999999999888777766
Q ss_pred eeeecCCCcccccc---ccCCCCCC-------CCeeeechhcCCCCCHHHHHHHHHHHHHHhhcccc
Q psy3135 159 LAINCDTDLTWFNH---ITPCGIKD-------KQVTSLSKHLSKDITVDTVVPLFKKHFESVFECEC 215 (229)
Q Consensus 159 ~alNv~~dl~~f~~---I~pcGl~~-------~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~ 215 (229)
-+|.+++|++.+.. ..+.++.+ .+||+|.+.++ .++++++++.|+++|.+.|+...
T Consensus 151 GTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~-~~~~e~~~~~l~~~f~~~~~~~~ 216 (338)
T PRK03822 151 GTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLP-GITHEQVCEAITEAFFAHYGERV 216 (338)
T ss_pred EEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCC-CCCHHHHHHHHHHHHHHHhCCCC
Confidence 57889988765422 23334444 35777777654 58999999999999999998543
No 14
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=99.96 E-value=6.6e-28 Score=228.70 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=167.8
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEe
Q psy3135 1 MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT 80 (229)
Q Consensus 1 m~~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~ 80 (229)
|+..|+++..+..+-.-.+|+.+.++.... ...++|++|+++|++++||+| +.+.|++.++|++.||+|+||
T Consensus 224 ~m~~m~~i~s~s~dp~~NLAlEE~Ll~~~~-------~~~~~l~lW~n~ptVvIGrnQ-N~~~EVNl~~~~~~gI~vVRR 295 (562)
T PRK14061 224 VMSTLRLLISDSYDPWFNLAVEECIFRQMP-------ATQRVLFLWRNADTVVIGRAQ-NPWKECNTRRMEEDNVRLARR 295 (562)
T ss_pred hcccEEEEEcCCCCHHHHHHHHHHHHhcCC-------CCCCEEEEEcCCCEEEECCCC-CchhhhCHHHHHhcCCcEEEE
Confidence 566789998888888889999999998753 345789999999999999999 888899999999999999999
Q ss_pred ccCCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-cccCceEEeeCCCceEEe----CCCCceeeeceeeeCcEE
Q psy3135 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-QEFSLNAGLIPKYTGVFL----DDEYKVCAIGVHSSLYIT 155 (229)
Q Consensus 81 ~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-~~~gi~a~~~~~~~gv~v----~~~rKIasiG~~i~~~it 155 (229)
.+|||++|||+|++.+.+|.+-. ..+...|...+.++ +.+||+|++. ++|||.+ ++ +||+|.+.+..++..
T Consensus 296 ~SGGGAVYHD~GNlnfSfi~~~~--~~~~~~~~~~Ii~aL~~LGI~ae~s-gRNDI~v~~~~~G-kKISGsAq~~~~~~~ 371 (562)
T PRK14061 296 SSGGGAVFHDLGNTCFTFMAGKP--EYDKTISTSIVLNALNALGVSAEAS-GRNDLVVKTAEGD-RKVSGSAYRETKDRG 371 (562)
T ss_pred CCCCcEEEEcCCceEEEEEeCCc--ccchHHHHHHHHHHHHHcCCCeEEC-CCccEEEeeCCCC-cEEEEEeEEEeCCeE
Confidence 99999999999999999987643 24566677777777 8999999995 5599999 56 999999999998888
Q ss_pred EEeeeeecCCCcccc---ccccCCCCCCC-------CeeeechhcCCCCCHHHHHHHHHHHHHHhhccccc
Q psy3135 156 HHGLAINCDTDLTWF---NHITPCGIKDK-------QVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 216 (229)
Q Consensus 156 ~HG~alNv~~dl~~f---~~I~pcGl~~~-------~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 216 (229)
+|+.+|-++.|++.. ....+.++.++ +||+|.+.++ .++++++++.+.++|.+.||.+..
T Consensus 372 lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~-~it~e~f~~~L~~~f~~~~g~~~~ 441 (562)
T PRK14061 372 FHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLP-GIPHEQVCEAITEAFFAHYGERVE 441 (562)
T ss_pred EEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCC-CCCHHHHHHHHHHHHHHHcCCCCc
Confidence 866678888887643 23334455443 5777777665 589999999999999999986543
No 15
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=99.95 E-value=3.4e-27 Score=212.68 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=159.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccCCce
Q psy3135 7 LVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLI 86 (229)
Q Consensus 7 v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg~ 86 (229)
+++.+..+-...||+.+.+++.... +..+++|+||+++|++++|++| +.+.+++.++|++.||+|+||.+|||+
T Consensus 3 ~i~~~~~d~~~nlA~ee~Ll~~~~~-----~~~~~~l~~w~~~p~vviG~~Q-~~~~ev~~~~~~~~gi~vvRR~sGGGa 76 (324)
T TIGR00545 3 ILTSPSNDPYFNLALEEYLFKEFPK-----TQRGKVLLFWQNANTIVIGRNQ-NTWAEVNLKELEEDNVNLFRRFSGGGA 76 (324)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcccc-----CCCCcEEEEEcCCCeEEECCCC-CHHHHhCHHHHHHcCCeEEEECCCCce
Confidence 5666777888899999999998765 4556799999999999999999 888889999999999999999999999
Q ss_pred eEecCCCeEEEEeeecCCCC-CCHHHHHHHHHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecC
Q psy3135 87 TFHGPGQLVAYPIINLKHFT-PSIKWFVQSIEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCD 164 (229)
Q Consensus 87 tyHgpGQLv~Y~il~l~~~~-~~~~~~v~~le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~HG~alNv~ 164 (229)
+|||+|++.+.+|.+..... .+.+.+.+.+.++ +.+||+++... ++||.+++ +||+|.+++..++..+|+.+|.++
T Consensus 77 VyhD~g~l~~s~i~~~~~~~~~~~~~~~~~i~~aL~~lGi~a~~~~-rnDl~v~g-kKisGsAq~~~~~~~l~HGtlL~~ 154 (324)
T TIGR00545 77 VFHDLGNICFSFITPKDGKEFENAKIFTRNVIKALNSLGVEAELSG-RNDLVVDG-RKISGSAYYITKDRGFHHGTLLFD 154 (324)
T ss_pred EEEcCCceEEEEEEcCCccchhhHHHHHHHHHHHHHHhCCCeEECC-CceEEECC-EEEEEEeeeeeCCEEEEEEEEEcc
Confidence 99999999999998763221 2345566666666 99999999865 59999999 999999999888777655578888
Q ss_pred CCcccccc-c--cCCCCCC-------CCeeeechhcCCCCCHHHHHHHHHHHHHHhhccc
Q psy3135 165 TDLTWFNH-I--TPCGIKD-------KQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 214 (229)
Q Consensus 165 ~dl~~f~~-I--~pcGl~~-------~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~ 214 (229)
.|++.+.. + .+.++.+ .+||+|.+.++. ++++++.+.++++|.+ ++.+
T Consensus 155 ~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~-~~~e~~~~~l~~~f~~-~~~~ 212 (324)
T TIGR00545 155 ADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPN-ITTEQFLEEMTQAFFT-YTER 212 (324)
T ss_pred CCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCC-CCHHHHHHHHHHHHHh-hCCC
Confidence 88765433 2 2334433 357777776654 8999999999999998 5433
No 16
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=99.93 E-value=2.1e-24 Score=187.96 Aligned_cols=205 Identities=20% Similarity=0.219 Sum_probs=155.2
Q ss_pred eEEEEcCCCC--hHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEecc
Q psy3135 5 VQLVRLGLVS--YSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (229)
Q Consensus 5 ~~v~~~G~~~--y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (229)
+.+++.+..+ -...+|+++.++..... + ...++++.++|++++|++| +...+++.+++++.|++|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~n~A~de~ll~~~~~-----~--~~i~~~~~~~~~v~lG~~q-~~~~Ev~~~~~~~~~i~vvRR~s 73 (248)
T COG0095 2 WRIIDLGIRDFDPAFNLALDEALLRSLSE-----G--GTLRLYWWNPPTVVLGRFQ-NTLPEVNLEYVKEDGIPVVRRPS 73 (248)
T ss_pred eeEEeccccCCCHHHHHHHHHHHHHhCCC-----C--CeEEEEEECCCeEEECCcc-chHhHhhHHHHHHcCCcEEEEcC
Confidence 4667777744 78889999999998864 2 2444555579999999999 77778999999999999999999
Q ss_pred CCceeEecCCCeEEEEeeecCCCCCC----HHHHHHHHHhh-cccCce-EEeeCCCceEEeCCCCceeeeceeeeCcEEE
Q psy3135 83 GGLITFHGPGQLVAYPIINLKHFTPS----IKWFVQSIEQT-QEFSLN-AGLIPKYTGVFLDDEYKVCAIGVHSSLYITH 156 (229)
Q Consensus 83 GGg~tyHgpGQLv~Y~il~l~~~~~~----~~~~v~~le~~-~~~gi~-a~~~~~~~gv~v~~~rKIasiG~~i~~~it~ 156 (229)
|||++||++|++++..|++-...... .+.+.+.+.++ ..+|++ +.. ++++||-+++ +||||++++..++..+
T Consensus 74 GGGaV~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~~-~~~nDl~v~g-kKisG~Aq~~~~~~~l 151 (248)
T COG0095 74 GGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAEC-PGRNDLVVDG-KKISGSAQRRTKGRIL 151 (248)
T ss_pred CCceEEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHcCCCeecc-CCCcceeEcC-cEEeeHHHHhhCCcEE
Confidence 99999999999999999877653223 33345555555 899999 666 5669999999 9999999987766666
Q ss_pred EeeeeecCCCcccccc---ccCCCCCCCC-------eeeechhcCCCCCHHHHHHHHHHHHHHhhccccccccch
Q psy3135 157 HGLAINCDTDLTWFNH---ITPCGIKDKQ-------VTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELD 221 (229)
Q Consensus 157 HG~alNv~~dl~~f~~---I~pcGl~~~~-------vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~ 221 (229)
|+.+|-++.|++.+.. +.+.+++++. |++|+++ .+++++++.+++.+.|.+.++.+.....++
T Consensus 152 ~hgtll~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~--~~~~~~e~~~~l~~~f~~~~~~~~~~~~lt 224 (248)
T COG0095 152 HHGTLLLDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEEL--LKISVEEFLEALLEAFFKVLGVELEEYELT 224 (248)
T ss_pred EEEEEEEeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhc--cCCCHHHHHHHHHHHHHHhhCCCccccCCC
Confidence 4446777777654433 2334455544 5666654 779999999999999999998544444443
No 17
>KOG3159|consensus
Probab=99.84 E-value=2.9e-20 Score=162.80 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=155.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccCC
Q psy3135 5 VQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGG 84 (229)
Q Consensus 5 ~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rGG 84 (229)
..++-+.--+|.. +|+.+-+..... ......|+||.+.|++.||||| +.|.|++...|.+.+|+++||.+||
T Consensus 11 ~V~~s~S~~~y~N-LAlE~~l~~~~~------~~~~~~Ll~w~N~p~vVIGRhQ-Npw~E~nv~~~~e~~I~liRR~SGG 82 (336)
T KOG3159|consen 11 FVLQSLSSDPYYN-LALENYLYRHKN------GPDKHILLLWINDPCVVIGRHQ-NPWQEANVALLRENNIPLIRRFSGG 82 (336)
T ss_pred eEEEEecCchhhh-hHHHHHHHhhcc------CCCCeEEEEEeCCceEEEccCC-CcceeccHHHHHhcCCeEEEEecCC
Confidence 4455555566655 888777764333 5678999999999999999999 9999999999999999999999999
Q ss_pred ceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh---cccCceEEeeCCCceEEeC-CCCceeeeceeeeCcEEEEeee
Q psy3135 85 LITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT---QEFSLNAGLIPKYTGVFLD-DEYKVCAIGVHSSLYITHHGLA 160 (229)
Q Consensus 85 g~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~---~~~gi~a~~~~~~~gv~v~-~~rKIasiG~~i~~~it~HG~a 160 (229)
|++|||-|+|...++.+-+.+. =.+....+-++ .++.+++..... -|+-++ ++|||+|.+.++.++-.||..+
T Consensus 83 GTVyHDlGNLN~S~lt~re~~~--r~~nlk~iv~ALn~~e~~v~v~~nqR-~Di~l~~g~rKiSGtA~kI~r~raYHH~T 159 (336)
T KOG3159|consen 83 GTVYHDLGNLNYSLLTNREKFD--RKENLKIIVRALNGDEPFVKVNLNQR-DDIVLDFGQRKISGTAYKIARNRAYHHCT 159 (336)
T ss_pred ceEEEecCceeEEEEccHHHcC--cccchHHHHHHhccCCceEeeccccc-ccceecccCceeccchhhhcCCceeeeEE
Confidence 9999999999888888766542 22223333333 578888876544 455554 3399999999999999999999
Q ss_pred eecCCCccccccc---cCCCCCCCCeeeech-----h--cCCCCCHHHHHHHHHHHHHHhhccc--cccccchhHH
Q psy3135 161 INCDTDLTWFNHI---TPCGIKDKQVTSLSK-----H--LSKDITVDTVVPLFKKHFESVFECE--CSEVELDEEI 224 (229)
Q Consensus 161 lNv~~dl~~f~~I---~pcGl~~~~vtSl~~-----~--l~~~~~~~~v~~~l~~~f~~~f~~~--~~~~~~~~~~ 224 (229)
+.++.|+..+... -+.++..+...|..+ . -..-++.+..+-++.+.+.+.|..+ ......+|+.
T Consensus 160 ~L~~aDl~~ls~lL~sp~~~~~s~at~sv~sp~vk~lie~~~~v~~~q~~~av~~~y~~t~~~d~~i~svn~~e~~ 235 (336)
T KOG3159|consen 160 MLLNADLENLSELLKSPRVNIRSKATSSVRSPRVKNLIEKDDFVNVEQSAVAVQEEYKKTFKEDGEIKSVNPTEEL 235 (336)
T ss_pred eEeccchHHHHhhccCCCCCccccccccccchhhhhhhhhcCcccHhHHHHHHHHHHHHHhcccCCcceecccccc
Confidence 9999998877654 234666665555544 1 1234677778888888888888776 4444444443
No 18
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.61 E-value=4e-15 Score=115.25 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=84.9
Q ss_pred eccCCcccc-chhhHhhhhhCCCcEEEeccCCceeEecCCCeEEEEee-ecCCC---CCCHHHHHHHHHhh--ccc----
Q psy3135 54 IGIRSLKEY-DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPII-NLKHF---TPSIKWFVQSIEQT--QEF---- 122 (229)
Q Consensus 54 ~Gr~~~~~~-~~~~~~~l~~~gi~v~r~~rGGg~tyHgpGQLv~Y~il-~l~~~---~~~~~~~v~~le~~--~~~---- 122 (229)
+|++| +.. .+.+.+.+++.+++++++.|||+.+||+|++.+.|.++ +.... ...+..|+..+..+ +.+
T Consensus 1 ~g~~~-~st~~~~~~~~~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (125)
T PF03099_consen 1 IGYFQ-DSTKEELNQEELKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEALGEFG 79 (125)
T ss_dssp EETTB-SHHHHHHHHHHHHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCeE-CHHHHHHHHhcCccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHHhhhhc
Confidence 57888 443 56788999999999999999999999996555555555 44332 13456665544433 444
Q ss_pred ----CceEEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecCCC
Q psy3135 123 ----SLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTD 166 (229)
Q Consensus 123 ----gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~HG~alNv~~d 166 (229)
|+.+..+.. |||++++ ||||+++++..++..+|+++++++.|
T Consensus 80 ~~~~~~~~~~kw~-nDi~~~~-kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 80 PGEPGIDCFIKWP-NDIYVNG-KKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp HTTTTSSEEEETT-TEEEETT-EEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred cccCCCceEEeCC-CCccCCC-cEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 778888755 9999999 99999999999999999999999864
No 19
>PRK08330 biotin--protein ligase; Provisional
Probab=99.49 E-value=2.9e-13 Score=117.07 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=97.9
Q ss_pred ccCCceeEecCCCeEEEEeeecCCCCCCHHHHHHH----HHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEE
Q psy3135 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQS----IEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYIT 155 (229)
Q Consensus 81 ~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~----le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it 155 (229)
-|.|..++..||+|.++++++.......+..+.-. +.++ +.+|+++..+.+ ||||+++ +|||||.+....+.+
T Consensus 41 GR~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av~~~l~~~g~~~~iKWP-NDI~~~~-kKi~GILiE~~~~~~ 118 (236)
T PRK08330 41 GRKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAVVDTLREFGIEGKIKWP-NDVLVNY-KKIAGVLVEGKGDFV 118 (236)
T ss_pred CCCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccccCC-CeEEECC-eEEEEEeEEEeCCEE
Confidence 47788899999999999998764322222222111 2223 678999888876 9999999 999999999888889
Q ss_pred EEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 156 HHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 156 ~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
+||+.|||+++ .||++.+ .+|||.++++..++.+++...++++|.+.|.
T Consensus 119 viGiGiNv~~~-------~p~~l~~-~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~ 167 (236)
T PRK08330 119 VLGIGLNVNNE-------IPDELRE-TATSMKEVLGREVPLIEVFKRLVENLDRWYK 167 (236)
T ss_pred EEEEEEecCCC-------CCccccc-ccccHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999875 3999876 6999998889999999999999999988776
No 20
>PRK05935 biotin--protein ligase; Provisional
Probab=98.72 E-value=2.6e-07 Score=77.69 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=91.3
Q ss_pred ccCCceeEecCCCeEEEEeeecCCCCCCHHHHHH----HHHhh-cccCc-eEEeeCCCceEEeCCCCceeeeceeee---
Q psy3135 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQ----SIEQT-QEFSL-NAGLIPKYTGVFLDDEYKVCAIGVHSS--- 151 (229)
Q Consensus 81 ~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~----~le~~-~~~gi-~a~~~~~~~gv~v~~~rKIasiG~~i~--- 151 (229)
-|.|..++..||+|.+..++.......++..... .+.++ +.+++ ++..+-+ ||||+++ +|||||=+...
T Consensus 43 GR~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~l~~~~~~~~~iKWP-NDI~~~~-kKi~GILiE~~~~~ 120 (190)
T PRK05935 43 GKFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRLGEDLGITEAVIKWP-NDVLVHG-EKLCGVLCETIPVK 120 (190)
T ss_pred CCCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHHHHHhCCccccccCC-CeEEECC-cEEEEEEEeccccC
Confidence 4778999999999988888865543333322111 22333 66776 4777778 9999999 99999877632
Q ss_pred -CcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhccc
Q psy3135 152 -LYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 214 (229)
Q Consensus 152 -~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~ 214 (229)
.....-|+.+|++.+.+.+. ++ ...+|||..+.+..++.+++...++++|.+.+-.+
T Consensus 121 ~~~~vVIGIGINv~~~~~~~~-----~~-~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 178 (190)
T PRK05935 121 GGLGVILGIGVNGNTTKDELL-----GI-DQPATSLQELLGHPIDLEEQRERLIKHIKHVLIQT 178 (190)
T ss_pred CCcEEEEEEeEecCCCchhcc-----cc-CCCcccHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23567899999997644331 22 24589999888999999999999999999887654
No 21
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=98.45 E-value=2.9e-06 Score=75.62 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=83.5
Q ss_pred CceeEecCCCeEEEEeeecCCCCCCHHHHH---HH--HHhh-cccCceEEeeCCCceEEeCCCCceeeeceeee------
Q psy3135 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFV---QS--IEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSS------ 151 (229)
Q Consensus 84 Gg~tyHgpGQLv~Y~il~l~~~~~~~~~~v---~~--le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~------ 151 (229)
|..++.-||.|.+++++..+........++ .. +.++ +.++++...+-+ ||||+++ +|||||=+...
T Consensus 72 gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~Lsl~~alAv~~~L~~~~~~~~IKWP-NDI~~~~-kKiaGILiE~~~~~~~~ 149 (285)
T PTZ00275 72 DRIWLSEKGNLFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEYFHLVTQIKWI-NDVLVNY-KKIAGCLVHLYYLDDFP 149 (285)
T ss_pred CCEEECCCCceEEEEEEecCCcCHhHhHHHHHHHHHHHHHHHHHhCCceeEECC-CccccCC-cEEEEEEEeeeeccccc
Confidence 888999999998888886544322211122 21 2333 668999999888 9999999 99999977643
Q ss_pred -----CcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCC-------CCHHHHHHHHHHHHHHhhc
Q psy3135 152 -----LYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKD-------ITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 152 -----~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~-------~~~~~v~~~l~~~f~~~f~ 212 (229)
.....-|+-|||+.. .| |..+ ...+|||..+.+.. ++.+++...+++.|.+.+.
T Consensus 150 ~~~~~~~~vViGIGINvn~~--~~----~~~~-~~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~ 215 (285)
T PTZ00275 150 NLNSRYVCVMVGIGINVTLE--DK----HNLL-NNNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINLKAVIN 215 (285)
T ss_pred cccCceeEEEEEEEEecCCC--CC----cccc-cCCcccHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 134678999999763 22 2222 23678998765543 4678999999999887764
No 22
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=98.42 E-value=2.4e-06 Score=73.89 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=88.6
Q ss_pred eccCCceeEecCCCeEEEEeeecCCCCCCHH---HHHHH--HHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeC-
Q psy3135 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIK---WFVQS--IEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL- 152 (229)
Q Consensus 80 ~~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~---~~v~~--le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~- 152 (229)
+-|.|..++-.||.|.+..+++... +.... .++-. +.++ +.++++...+-+ ||||+++ +|||+|=+....
T Consensus 38 RGR~gr~W~Sp~g~l~~S~~l~~~~-~~~~~~~ls~~~~lAv~~al~~~~~~~~iKWP-NDI~~~~-kKi~GIL~E~~~~ 114 (237)
T TIGR00121 38 RGRRGRKWLSPEGGLYFSLILRPDL-PKSPAPGLTLVAGIAIAEVLKELGDQVQVKWP-NDILLKD-KKLGGILTELTGK 114 (237)
T ss_pred CCCCCCcccCCCCceEEEEEECCCC-ChhHhhhhHHHHHHHHHHHHHHhCCCCCCcCC-ceEEECC-eEEEEEEEEcccC
Confidence 3477889999999888888876432 11111 12222 2333 677778888888 9999999 999999776432
Q ss_pred ----cEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 153 ----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 153 ----~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
....-|+.+||+.+ .| |..+. ...|||..+++..++.+++...++++|.+.+.
T Consensus 115 ~~~~~~vviGIGiNv~~~--~~----~~~~~-~~a~sl~~~~~~~~~~~~ll~~l~~~l~~~~~ 171 (237)
T TIGR00121 115 ENRADYVVIGIGINVQNR--KP----AESLR-EQAISLSEEAGIDLDRGELIEGFLRNFEENLE 171 (237)
T ss_pred CCCcCEEEEEEEEccCCC--CC----chhhc-ccceehHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 44678999999864 11 33443 36889998888899999999999999988776
No 23
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=98.40 E-value=3.8e-06 Score=73.28 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=83.3
Q ss_pred eccCCceeEecCCCeEEEEeeecCCCCCCHH---HHHHHH--Hhh-ccc--CceEEeeCCCceEEeCCCCceeeeceeee
Q psy3135 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIK---WFVQSI--EQT-QEF--SLNAGLIPKYTGVFLDDEYKVCAIGVHSS 151 (229)
Q Consensus 80 ~~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~---~~v~~l--e~~-~~~--gi~a~~~~~~~gv~v~~~rKIasiG~~i~ 151 (229)
|-|.|..++.-||.|.++.+++......+.. -++-.+ .++ +.+ ++++..+-+ ||||+++ +|||+|=+...
T Consensus 45 RGR~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~alav~~al~~~~~~~~~~iKWP-NDI~~~~-kKiaGILiE~~ 122 (245)
T PTZ00276 45 RGTGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITGLACRAAIMEVLHGAAVHTKWP-NDIIYAG-KKIGGSLIESE 122 (245)
T ss_pred CCCCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHHHHHHHHHHHhccCCceEEEcC-CeeEECC-cEEEEEEEccc
Confidence 3477888999999888888875433222211 122222 222 343 788889888 9999999 99999987755
Q ss_pred CcEEEEeeeeecCCCccccccccCCCCCCCCee---eechhcC-CCCCHHHHHHHHHHHHHHhhc
Q psy3135 152 LYITHHGLAINCDTDLTWFNHITPCGIKDKQVT---SLSKHLS-KDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 152 ~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vt---Sl~~~l~-~~~~~~~v~~~l~~~f~~~f~ 212 (229)
.....-|+-+||+.+.. + |.. ....| |+..+++ .+++.+++...+.++|.+.+.
T Consensus 123 ~~~vvIGIGINv~~~~~-~----~~~--~~~~~~l~sl~~~~~~~~~~r~~l~~~ll~~~~~~~~ 180 (245)
T PTZ00276 123 GEYLIIGIGMNIEVAPP-V----TDA--GRESTMVNEIAEDLGVKSVTPQDLAEAVWKHFFDICS 180 (245)
T ss_pred CCEEEEEEEEeeCCCCC-C----Ccc--ccccccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55677999999987532 1 111 11344 4444434 568889999999999988774
No 24
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=98.37 E-value=2.4e-06 Score=74.25 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=92.2
Q ss_pred eccCCceeEecCC-CeEEEEeeecCCCCCCH--HHHHHH--HHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeC-
Q psy3135 80 TNRGGLITFHGPG-QLVAYPIINLKHFTPSI--KWFVQS--IEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL- 152 (229)
Q Consensus 80 ~~rGGg~tyHgpG-QLv~Y~il~l~~~~~~~--~~~v~~--le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~- 152 (229)
|-|.|..++.-|| +|.+..++..+.....+ -.++-. +.++ +++++++..+-+ |||++++ ||+|+|=+....
T Consensus 34 RGR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~~~~~~~~iKWP-NDv~~~~-kKl~GIL~E~~~~ 111 (238)
T COG0340 34 RGRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALRKFGIDVRIKWP-NDVLLNG-KKLAGILVEAVGD 111 (238)
T ss_pred cCCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHHHhCcccCccCC-cceeECC-cceEEEEEeeeec
Confidence 4577889999998 88777777554421111 112222 2233 788899999888 9999999 999999887543
Q ss_pred ----cEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy3135 153 ----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 213 (229)
Q Consensus 153 ----~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 213 (229)
....-|+-+|++.....|. -+ +...|||.++. ..++..++...+.+.|.+.+..
T Consensus 112 ~~~~~~~viGIGINv~~~~~~~~-----~i-~~~atsL~~~~-~~~~r~~l~~~ll~~l~~~~~~ 169 (238)
T COG0340 112 ENGLLAVVVGIGINVNNPPPDFE-----DI-GQPATSLQEEG-EEIDREELLAKLLKELEKYLRQ 169 (238)
T ss_pred CCCceEEEEEEEEeeccCCcchh-----hh-hhhhhhHHhhh-CCCCHHHHHHHHHHHHHHHHHH
Confidence 2567899999999877662 12 34699999876 7899999999999999877753
No 25
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=98.07 E-value=4.2e-05 Score=68.88 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=84.5
Q ss_pred ccCCceeEecCC-CeEEEEeeecCCCCCCH--HHHHHH--HHhh-cccC-ceEEeeCCCceEEeCCCCceeeeceeeeC-
Q psy3135 81 NRGGLITFHGPG-QLVAYPIINLKHFTPSI--KWFVQS--IEQT-QEFS-LNAGLIPKYTGVFLDDEYKVCAIGVHSSL- 152 (229)
Q Consensus 81 ~rGGg~tyHgpG-QLv~Y~il~l~~~~~~~--~~~v~~--le~~-~~~g-i~a~~~~~~~gv~v~~~rKIasiG~~i~~- 152 (229)
-|.|..++.-|| .|.+..++......... -.++-. +.++ +.++ .+...+-+ ||||+++ +|||+|=+....
T Consensus 116 GR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~~~av~~al~~~~~~~~~iKWP-NDI~~~~-kKl~GIL~E~~~~ 193 (319)
T PRK11886 116 GRRGRQWFSPFGGNLYLSLYWRLNQGPAQAMGLSLVVGIAIAEALRRLGAIDVGLKWP-NDIYLND-RKLAGILVELSGE 193 (319)
T ss_pred CCCCCcccCCCCCCEEEEEEeCCCCChHHHhhHHHHHHHHHHHHHHHhcCCCcceeCC-ceeeECC-eeEEEEEEEeccC
Confidence 388899999999 59888888653210011 111222 2233 5554 46788888 9999999 999998776431
Q ss_pred ----cEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 153 ----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 153 ----~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
....-|+.+|++.+- | |..+.+...|||.++ +..++.+++...+.++|...+.
T Consensus 194 ~~~~~~~viGIGiNv~~~~--~----~~~~~~~~~~sl~~~-~~~~~~~~l~~~l~~~~~~~~~ 250 (319)
T PRK11886 194 TGDAAHVVIGIGINVAMPD--F----PEELIDQPWSDLQEA-GPTIDRNQLAAELIKQLRAALE 250 (319)
T ss_pred CCCccEEEEEEEEccCCCC--C----chhhhccceeeHhhc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 246789999998752 1 222223467899874 8889999999999999987764
No 26
>PRK08477 biotin--protein ligase; Provisional
Probab=98.02 E-value=9.4e-05 Score=63.25 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=79.7
Q ss_pred eccCCceeEecCCCeEEEEeeecCCCCCCHH----HHHHH--HHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeC
Q psy3135 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIK----WFVQS--IEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL 152 (229)
Q Consensus 80 ~~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~----~~v~~--le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~ 152 (229)
|-|.|..++..||.|.+..+++.......+. .++-. +.++ +.+|++...+-+ |||++++ +|||+|=+....
T Consensus 40 RGR~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~~~av~~~l~~~~~~~~iKWP-NDI~~~~-kKi~GIL~E~~~ 117 (211)
T PRK08477 40 IGSRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYFGFLLKEVLKELGSKVWLKWP-NDLYLDD-KKIGGVITNKIK 117 (211)
T ss_pred CCCCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHHHHHHHHHHHHhCCCeEEcCC-CeeEECC-cEEEEEEEeecC
Confidence 4477888888899888887775543211110 11111 2333 668998999888 9999999 999999887555
Q ss_pred cEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 153 YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 153 ~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
....-|+-+||+..... .+|+ +..++.+++...+.++|.+.+.
T Consensus 118 ~~vviGiGiNv~~~p~~-------------~~~l----~~~~~~~~ll~~l~~~~~~~~~ 160 (211)
T PRK08477 118 NFIVCGIGLNLKFSPKN-------------FACL----DIEISDDLLLEGFLQKIEKKIL 160 (211)
T ss_pred CeEEEEEEEeeCCCCCc-------------cccc----cCcCCHHHHHHHHHHHHHHHHh
Confidence 56778999999853221 2343 4578889999999999988773
No 27
>PRK06955 biotin--protein ligase; Provisional
Probab=97.66 E-value=0.00077 Score=60.44 Aligned_cols=129 Identities=10% Similarity=0.103 Sum_probs=81.6
Q ss_pred eccCCceeEecCCC-eEEEEeeecCCCCCCH--HHHHHHH--Hhh-cc----cCceEEeeCCCceEEeCCCCceeeecee
Q psy3135 80 TNRGGLITFHGPGQ-LVAYPIINLKHFTPSI--KWFVQSI--EQT-QE----FSLNAGLIPKYTGVFLDDEYKVCAIGVH 149 (229)
Q Consensus 80 ~~rGGg~tyHgpGQ-Lv~Y~il~l~~~~~~~--~~~v~~l--e~~-~~----~gi~a~~~~~~~gv~v~~~rKIasiG~~ 149 (229)
|-|.|..++-.||+ |.+..+++.......+ -.++-.+ .++ +. ++++...+-+ ||||+++ +|||||=+.
T Consensus 77 RGR~GR~W~Sp~G~~L~~Si~l~~~~~~~~~~~Lsl~~glAv~~al~~~~~~~~~~~~iKWP-NDIl~~g-kKiaGILiE 154 (300)
T PRK06955 77 RGRQGRPWFAQPGNALLFSVACVLPRPVAALAGLSLAVGVALAEALAALPAALGQRIALKWP-NDLLIAG-RKLAGILIE 154 (300)
T ss_pred CCCCcCcccCCCCCcEEEEeEecCCCChHHhhhHHHHHHHHHHHHHHHhhcccCCceeeeCC-ceeeECC-cEEEEEEEE
Confidence 35889999999995 8888877644211111 1122222 122 33 4678888888 9999999 999999876
Q ss_pred ee---C--cEEEEeeeeecCCCccc--c-c----cccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 150 SS---L--YITHHGLAINCDTDLTW--F-N----HITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 150 i~---~--~it~HG~alNv~~dl~~--f-~----~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
.. . ....-|+-+||+.+.+. - . ...|.. .+...+++.. .+..++.+++...+.+.|.+.+.
T Consensus 155 ~~~~~~~~~~vVIGIGINv~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~-~~~~~~~~~ll~~ll~~l~~~~~ 227 (300)
T PRK06955 155 TVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALA-RGLPPVALAA-ACAGANLTDTLAAALNALAPALQ 227 (300)
T ss_pred cccCCCCccEEEEEEEEeeCCCcccccccccccccccccc-ccccchhhhh-cCCCCCHHHHHHHHHHHHHHHHH
Confidence 42 1 34678999999865220 0 0 001111 1223455543 46788999999999999988765
No 28
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=97.40 E-value=0.0015 Score=63.92 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=80.7
Q ss_pred eccCCceeEecCCC-eEEEEeeecCCCCCCHHH--HHH--HHHhh-cccCceEEeeCCCceEEeCCCCceeeeceeeeC-
Q psy3135 80 TNRGGLITFHGPGQ-LVAYPIINLKHFTPSIKW--FVQ--SIEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL- 152 (229)
Q Consensus 80 ~~rGGg~tyHgpGQ-Lv~Y~il~l~~~~~~~~~--~v~--~le~~-~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~- 152 (229)
|-|.|..++..||. |.+..++........+.. ++- ++.++ +.+|++...+-+ ||||+++ ||||+|=+....
T Consensus 122 RGRrGR~W~Sp~G~~Ly~S~~l~~~~~~~~~~~Lsl~vgvAv~~aL~~~g~~v~lKWP-NDIl~~g-kKlaGILiE~~~~ 199 (592)
T PRK13325 122 RGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAAVACRRALSRLGLKTQIKWP-NDLVVGR-DKLGGILIETVRT 199 (592)
T ss_pred CCCCCCcccCCCCCcEEEEeeecCCCChhhhhhHHHHHHHHHHHHHHHcCCCceEeCc-ceEEECC-ceEEEEEEeeeec
Confidence 34889999999995 888888754321111111 111 12333 678999888888 9999999 999999877541
Q ss_pred ---cEEEEeeeeecCCCccccccccCCCCCC-CCeeeechhcC--CCCCHHHHHHHHHHHHHHhhc
Q psy3135 153 ---YITHHGLAINCDTDLTWFNHITPCGIKD-KQVTSLSKHLS--KDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 153 ---~it~HG~alNv~~dl~~f~~I~pcGl~~-~~vtSl~~~l~--~~~~~~~v~~~l~~~f~~~f~ 212 (229)
....-|+-+||+.. ..+.. ...+||....+ ..++.+++...++++|.+.+.
T Consensus 200 ~~~~~vVIGIGINv~~p---------~~~~~~~~~~sL~~~~~~~~~~dr~~ll~~ll~~l~~~l~ 256 (592)
T PRK13325 200 GGKTVAVVGIGINFVLP---------KEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLL 256 (592)
T ss_pred CCCcEEEEEEEEeeCCC---------cccccCcChHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 23568999999732 22221 23456655432 357888888888888887765
No 29
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=95.74 E-value=0.1 Score=43.41 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=44.3
Q ss_pred HHHHHHhh-cccCceEEeeCCCceEEeCCCCceee-eceeeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeechh
Q psy3135 112 FVQSIEQT-QEFSLNAGLIPKYTGVFLDDEYKVCA-IGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKH 189 (229)
Q Consensus 112 ~v~~le~~-~~~gi~a~~~~~~~gv~v~~~rKIas-iG~~i~~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~ 189 (229)
|+..+.+. ..+|++..+. + .|+|+++ ||++- |+ ..+.--+.-.+.+||+.+=.| ....+|.+
T Consensus 87 lv~i~kE~L~~~gv~~~R~-G-DDLy~~~-~KLSVSIA-t~s~vS~kIH~GiNV~~~g~p-----------V~aigL~d- 150 (183)
T PF04017_consen 87 LVAIIKEVLEEYGVKLRRE-G-DDLYVNG-RKLSVSIA-TASPVSTKIHFGINVSSEGTP-----------VPAIGLED- 150 (183)
T ss_dssp HHHHHHHHHHTTT--EEEE-T-TEEEETT-EE-EEEEE-EEETTEEEEEEEEESS-TT-------------S-B--TTT-
T ss_pred HHHHHHHHHHhcCCceeec-c-cceeECC-CEEEEEEE-ecCcchheEEEeEeecccCcc-----------ccccCHHH-
Confidence 33344455 7889998885 4 5999999 99874 33 234444446679999997443 23444444
Q ss_pred cCCCCCHHHHHHHHHHHHHHhh
Q psy3135 190 LSKDITVDTVVPLFKKHFESVF 211 (229)
Q Consensus 190 l~~~~~~~~v~~~l~~~f~~~f 211 (229)
+|.. +++++++.+.+.+++.+
T Consensus 151 lgi~-~~~~~~~~i~~~y~~E~ 171 (183)
T PF04017_consen 151 LGIE-DIDELMERIAKRYVEEI 171 (183)
T ss_dssp TT---HH-HHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHHHH
Confidence 4542 23366666666666554
No 30
>KOG1536|consensus
Probab=94.81 E-value=0.32 Score=46.95 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=80.3
Q ss_pred CcEEEeccCCceeEecCCCeEEEEeeec--CCCCCCHHHHHHHHHhh----------cccCceEEeeCCCceEEeCCCCc
Q psy3135 75 ADFYKTNRGGLITFHGPGQLVAYPIINL--KHFTPSIKWFVQSIEQT----------QEFSLNAGLIPKYTGVFLDDEYK 142 (229)
Q Consensus 75 i~v~r~~rGGg~tyHgpGQLv~Y~il~l--~~~~~~~~~~v~~le~~----------~~~gi~a~~~~~~~gv~v~~~rK 142 (229)
+++--|-|||..+----|-+...+++.. +.+-..+-.|+..+.-+ ..=.|++.++.+ ||+|+.+.-|
T Consensus 420 ~Q~sGRGRGgN~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpvrIKWP-NDlY~~~~lK 498 (649)
T KOG1536|consen 420 IQTSGRGRGGNVWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYAPGYPDIPVRIKWP-NDLYVNGYLK 498 (649)
T ss_pred EEeecccCCCCeeecCcceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHhcCCCCCCCceeeecC-ccceeeeccc
Confidence 3344566999988888888888888754 43323333444433211 333688999888 9999987789
Q ss_pred eeeecee--ee--CcEEEEeeeeecCCCccccccccCCCCCCCCeeeechhcC----------CCCCHHHHHHHHHHHHH
Q psy3135 143 VCAIGVH--SS--LYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLS----------KDITVDTVVPLFKKHFE 208 (229)
Q Consensus 143 IasiG~~--i~--~~it~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~----------~~~~~~~v~~~l~~~f~ 208 (229)
|+++=+. .+ .....-|..+||++|= .-|||...+. .++.-|++...++..|.
T Consensus 499 vgGiLv~st~r~n~f~v~iGCGiNVtN~~--------------PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe 564 (649)
T KOG1536|consen 499 VGGILVTSTYRSNKFNVSIGCGINVTNDG--------------PTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFE 564 (649)
T ss_pred cceEEEEeeecCceEEEEEeeeeEecCCC--------------CceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHH
Confidence 9998774 33 3555689999999971 2333333211 24567778778887887
Q ss_pred Hhhc
Q psy3135 209 SVFE 212 (229)
Q Consensus 209 ~~f~ 212 (229)
+.|.
T Consensus 565 ~~~k 568 (649)
T KOG1536|consen 565 KYFK 568 (649)
T ss_pred HHHH
Confidence 7665
No 31
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.79 Score=37.82 Aligned_cols=76 Identities=12% Similarity=0.205 Sum_probs=50.2
Q ss_pred cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEEE-EeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHH
Q psy3135 120 QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITH-HGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDT 198 (229)
Q Consensus 120 ~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it~-HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~ 198 (229)
..+|+++.+. + .++|+++ ||++- -++....+++ -.+.+||.+. |.++....+|.+ +|. .++.+
T Consensus 99 ~~~gv~~~Re-G-DDly~~g-rKLtV-sIat~s~vs~kiHlGiNV~t~----------g~p~V~~igL~d-lg~-~Di~~ 162 (189)
T COG2029 99 EKLGVDLSRE-G-DDLYVEG-RKLTV-SIATVSPVSSKIHLGINVKTE----------GVPDVDAIGLED-LGY-GDILE 162 (189)
T ss_pred HHhCCccccc-C-CceeecC-cEEEE-EEEecCCcceeEEEeEeeecc----------cCCCCCcccccc-cCC-CCHHH
Confidence 7799999985 5 6999999 99863 2333344444 4467899875 444455666666 453 56666
Q ss_pred HHHHHHHHHHHhh
Q psy3135 199 VVPLFKKHFESVF 211 (229)
Q Consensus 199 v~~~l~~~f~~~f 211 (229)
+++..+.+|.+.+
T Consensus 163 ~m~~va~~yv~Ei 175 (189)
T COG2029 163 FMERVAVAYVREI 175 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 32
>KOG0325|consensus
Probab=88.65 E-value=0.22 Score=42.67 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=27.3
Q ss_pred hCCCcEEEeccCCceeEecCCCeEEEEeeecCC
Q psy3135 72 KLGADFYKTNRGGLITFHGPGQLVAYPIINLKH 104 (229)
Q Consensus 72 ~~gi~v~r~~rGGg~tyHgpGQLv~Y~il~l~~ 104 (229)
...+.++.+-+|+++|||| ++|++|+.+....
T Consensus 141 d~k~aaiGi~vsr~IT~HG-laLN~~tDL~~fn 172 (226)
T KOG0325|consen 141 DAKIAAIGIRVSREITYHG-LALNVNTDLTYFN 172 (226)
T ss_pred CCeeEEEEEEecCcEeecc-eEEEeccCcchhh
Confidence 3467789999999999999 9999999886654
No 33
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=48.88 E-value=12 Score=20.70 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=9.0
Q ss_pred eeEecCCCeEE
Q psy3135 86 ITFHGPGQLVA 96 (229)
Q Consensus 86 ~tyHgpGQLv~ 96 (229)
+|||||++.-+
T Consensus 4 v~y~G~~~v~v 14 (23)
T PF13823_consen 4 VVYHGPKDVRV 14 (23)
T ss_dssp EEEEETTEEEE
T ss_pred eEEeCCCceEE
Confidence 68999998754
No 34
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.55 E-value=16 Score=36.93 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=71.9
Q ss_pred ecCCCeEEEEeeecCCC---CCCHHHHHHHHH--hh--cccCce-EEeeCCCceEEe----CCC----------Cceee-
Q psy3135 89 HGPGQLVAYPIINLKHF---TPSIKWFVQSIE--QT--QEFSLN-AGLIPKYTGVFL----DDE----------YKVCA- 145 (229)
Q Consensus 89 HgpGQLv~Y~il~l~~~---~~~~~~~v~~le--~~--~~~gi~-a~~~~~~~gv~v----~~~----------rKIas- 145 (229)
|.|.+.-.|||+.-+-. +.++.++...=+ .+ +++|+. ++..|++|.+-- .++ .|+|.
T Consensus 529 ~~~~~~~~~PmvrGRl~aiNGq~v~~~~~~~~~~~al~rd~~LT~~~~~P~~n~l~aG~Ww~~~~~g~P~VS~e~~~A~~ 608 (829)
T COG3127 529 ASPEGETFYPMVRGRLTAINGQPVTEMSVPPSARWALRRDLNLTWAEKRPENNPLTAGRWWPKNDSGEPEVSMEEGEAKR 608 (829)
T ss_pred cCCCcccccceeeeeEEEecCccCccccCCchHHHHHhcccCcchhhcCCCCCccccccCCCCCCCCCCccchhHhHHHH
Confidence 67777889999865422 233443322221 22 778887 455555444422 111 46665
Q ss_pred eceeeeCcEEEEeeeeecCCCcc------------ccccc-cCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhc
Q psy3135 146 IGVHSSLYITHHGLAINCDTDLT------------WFNHI-TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 146 iG~~i~~~it~HG~alNv~~dl~------------~f~~I-~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
+|+++-+-+|+-+..=|++.-.. .|--| .|--+.+...|.|.... .+..- ..+...+.+.|-
T Consensus 609 LglKLGDtvTf~v~gq~i~A~I~slR~VeWesl~pNF~~IF~P~tl~g~P~twltsfr-~~~~~----~~~l~ql~r~fP 683 (829)
T COG3127 609 LGLKLGDTVTFMVLGQNITAKITSLRKVEWESLRPNFYMIFSPGTLDGAPQTWLTSFR-IPNGQ----AALLRQLTRAFP 683 (829)
T ss_pred hCCccCCEEEEEeccceEEeeeceeeeeccccccccEEEEeCchhhcCCchhhheeee-cCCcc----hHHHHHHHHhCC
Confidence 88888899999887777665332 23334 35556666655555421 11121 334444444443
Q ss_pred cccccccchhHHhhhc
Q psy3135 213 CECSEVELDEEIKHLN 228 (229)
Q Consensus 213 ~~~~~~~~~~~~~~~~ 228 (229)
+....+-.+.+++.|
T Consensus 684 -tvt~v~v~~~L~~v~ 698 (829)
T COG3127 684 -TVTLVDVGAALDQVN 698 (829)
T ss_pred -ceEEeeHHHHHHHHH
Confidence 344556666666655
No 35
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=32.84 E-value=1.6e+02 Score=20.01 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=44.4
Q ss_pred HhhhhhCCCcEEEeccCCceeEecC----CCeEEEEeeecCCCCCCHHHHHHHHHhh-cccCceEEee
Q psy3135 67 ELKLNKLGADFYKTNRGGLITFHGP----GQLVAYPIINLKHFTPSIKWFVQSIEQT-QEFSLNAGLI 129 (229)
Q Consensus 67 ~~~l~~~gi~v~r~~rGGg~tyHgp----GQLv~Y~il~l~~~~~~~~~~v~~le~~-~~~gi~a~~~ 129 (229)
...+.+.|+.+..... .+++.+ ++..+...+++.. ..++.++...|+.. +++|++...+
T Consensus 17 t~~l~~~~~nI~~~~~---~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~~~~~~ 80 (81)
T cd04869 17 TQFLAQRNINIEDLST---ETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNVDISLE 80 (81)
T ss_pred HHHHHHcCCCeEEeEe---eeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcceEEec
Confidence 4567889999999875 666643 6676777777764 46788898888888 8888876543
No 36
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=26.70 E-value=91 Score=27.72 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=11.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc
Q psy3135 191 SKDITVDTVVPLFKKHFESVFE 212 (229)
Q Consensus 191 ~~~~~~~~v~~~l~~~f~~~f~ 212 (229)
++|.+.++-...+...+.+.++
T Consensus 243 NPPwtle~ql~~~LP~L~~~L~ 264 (279)
T COG2961 243 NPPWTLEQQLRAALPWLTTLLA 264 (279)
T ss_pred CCCccHHHHHHHHHHHHHHHhc
Confidence 4455555555555555554444
No 37
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=25.58 E-value=1.5e+02 Score=25.88 Aligned_cols=59 Identities=8% Similarity=0.250 Sum_probs=29.9
Q ss_pred eeCcEEEEeeeeecCCCccccccc--cCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcc
Q psy3135 150 SSLYITHHGLAINCDTDLTWFNHI--TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 213 (229)
Q Consensus 150 i~~~it~HG~alNv~~dl~~f~~I--~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 213 (229)
+..+.+.-|-+. |..|+.+|.-+ +|..+.+....-|++ +..+ ++..+.+.++|...|..
T Consensus 158 IG~~a~Vg~gs~-V~~dVpp~~i~~G~pa~~~~~n~vgl~r---~g~~-~~~~~~~~~~~~~~~~~ 218 (255)
T PRK12461 158 IGALAMMAGGSR-ISKDVPPYCMMAGHPTNVHGLNAVGLRR---RGFS-SRAIRALKRAYKIIYRS 218 (255)
T ss_pred ECCCcEECCCce-EeccCCCCeEEecCcceEeccchhhhhh---cCCC-HHHHHHHHHHHHHHHhc
Confidence 334444444333 67777777554 344444444445544 2334 34444666666666643
No 38
>PRK11835 hypothetical protein; Provisional
Probab=24.95 E-value=2.1e+02 Score=22.03 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEeccC
Q psy3135 14 SYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (229)
Q Consensus 14 ~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (229)
+-+.||..++.+.+.... -.....++=||=.|+.=+-+.. . . .-.=.|+..|+.|....+|
T Consensus 50 dg~~aw~vm~~L~~sL~e-----iqv~~~ivEweGepCLFv~~~D-E-~--aa~CrLKn~GVAIAE~~~~ 110 (114)
T PRK11835 50 DGDNAWSVMQKLSQALSD-----IQVPCSVLECEGEPCLFVNRQD-E-S--AATCRLKNFGVAIAEPFSA 110 (114)
T ss_pred CChhHHHHHHHHHHHHHh-----hcccceEEEecCCceEEEeccc-c-h--hhheeeccCcEEEeccccc
Confidence 457889999999998876 4678889999999999887764 1 1 1233567888888776644
No 39
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=23.87 E-value=1.2e+02 Score=27.26 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=31.7
Q ss_pred CeEEeccCCccccc---hhhHhhhhhCCCcEEEeccCCceeEecCCCe
Q psy3135 50 PVYTIGIRSLKEYD---ENLELKLNKLGADFYKTNRGGLITFHGPGQL 94 (229)
Q Consensus 50 pv~T~Gr~~~~~~~---~~~~~~l~~~gi~v~r~~rGGg~tyHgpGQL 94 (229)
++++.|+.- .+- ..-.+.+++.+++++||+.-|.+++-..|+-
T Consensus 235 AliS~G~~N--~yghPh~~Vl~rl~~~~~~v~rTd~~G~I~~~~~~~~ 280 (293)
T COG2333 235 ALISSGRNN--RYGHPHQEVLERLQKRGIKVYRTDQQGAITVTFSGDG 280 (293)
T ss_pred EEEEeeccC--CCCCCcHHHHHHHHhcCCeEEecCCCCeEEEEeCCCe
Confidence 467777632 121 1235678999999999999999999988754
Done!