RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3135
(229 letters)
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus
thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Length = 237
Score = 243 bits (623), Expect = 5e-82
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 3 KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
+ + LGLV Y Q+ ++ N TLLLLEH V T+G ++ E
Sbjct: 21 MEFLVEDLGLVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGEN 75
Query: 63 DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT--- 119
E + G + Y RGG +T+HGPGQLV YPI + ++ F++ IE+
Sbjct: 76 LLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVR 132
Query: 120 --QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCG 177
+ ++A P Y GV++ ++ K+CAIGV ++ HG A+N +TDL F I PCG
Sbjct: 133 VAAGYGISAYPTPGYAGVWVGED-KLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCG 191
Query: 178 IKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDE 222
+K K VTSL K L + + ++ F VF E + E
Sbjct: 192 LKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE 236
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
acyltransferase, mycobacterium tuberculosis structural
proteomics project; HET: DKA; 1.08A {Mycobacterium
tuberculosis} SCOP: d.104.1.3
Length = 232
Score = 241 bits (618), Expect = 3e-81
Identities = 77/220 (35%), Positives = 104/220 (47%), Gaps = 21/220 (9%)
Query: 2 TKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKE 61
+ + +LG V Y ++Q + + + TLLLLEH VYT G R+
Sbjct: 11 LSAIDVRQLGTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETH 64
Query: 62 YDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-- 119
G T+RGG IT+HGPGQLV YPII L + +V+ +E++
Sbjct: 65 E-------RPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPL-DVVNYVRRLEESLI 116
Query: 120 ---QEFSLNAGLIPKYTGVFLDD--EYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHIT 174
+ L+AG + +GV+L KV AIGV S T HG A+NCD DL F I
Sbjct: 117 QVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIV 176
Query: 175 PCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 214
PCGI D VTSLS L + +TVD V + +
Sbjct: 177 PCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 216
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H,
structural genomics, structure initiative, PSI-2; 2.04A
{Streptococcus agalactiae} SCOP: d.104.1.3
Length = 288
Score = 39.6 bits (92), Expect = 4e-04
Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 42/217 (19%)
Query: 42 TLLLLEHKPVYTIGI--RSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQL---VA 96
L + +G+ R L + + ++ G + N GGL G L +
Sbjct: 48 ILHIWPMTKTVILGMLDRELPHLELAKK-EIISRGYEPVVRNFGGLAVVADEGILNFSLV 106
Query: 97 YPIINLKH--FTPSIKWFVQSIEQT-QEFSLNAGLIPKYTGVFLDDEY-------KVCAI 146
P + + + V I +F + ++ K
Sbjct: 107 IPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEV-ETSYCPGKFDLSINGKKFA-- 163
Query: 147 GVHSSLYITHHGLAINCDTDLT--------WFNHITPCGIKDKQ------------VTSL 186
G + +G+A++ + + G+ D + +L
Sbjct: 164 G--LAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANL 221
Query: 187 SKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 223
S L +TV+ V+ + V + + +
Sbjct: 222 SDLLDCPMTVEDVIDRMLISLKQVG-FNDRLLMIRPD 257
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A*
2aru_A* 2c7i_A 2ars_A* 3r07_A
Length = 262
Score = 38.5 bits (90), Expect = 0.001
Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 33/224 (14%)
Query: 23 EHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDE-NLELKLNKLGADFYKTN 81
+ + S L H IG +E +L+ + K G +
Sbjct: 21 DEAI-----YRSFQYGDKPILRFYRHDRSVIIG-YFQVAEEEVDLD-YMKKNGIMLARRY 73
Query: 82 RGGLITFHGPGQLVAYPIINLK---HFTPSIKWFVQSIEQT-QEFSLNAGLIPKYTGVF- 136
GG +H G L + ++ T + +++ + + L+A
Sbjct: 74 TGGGAVYHDLGDL-NFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIP 132
Query: 137 -------LDDEYKVC-AIGVHSSLYITHHG-LAINCDTD-LTWFNHITPCGIKDK----- 181
+ E K+ A G H + ++ D D L+ + +DK
Sbjct: 133 VNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKST 192
Query: 182 --QVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 223
+V +++ + D+++D V + F + E + E+
Sbjct: 193 RERVANVTDFV--DVSIDEVRNALIRGFSETLHIDFREDTITEK 234
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid,
ATP-binding, cytoplasm, nucleotide-binding, transferase,
lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A*
3a7a_A* 1x2g_A*
Length = 337
Score = 37.5 bits (87), Expect = 0.002
Identities = 28/196 (14%), Positives = 55/196 (28%), Gaps = 21/196 (10%)
Query: 42 TLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIIN 101
L L + IG + N ++ + + + GG FH G +
Sbjct: 33 VLFLWRNADTVVIGRAQNPWKECNTR-RMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAG 91
Query: 102 LKHFTPSIKWFVQSIEQT-QEFSLNAGLIPK--YTGVFLDDEYKVC----AIGVHSSLYI 154
+ + ++A + ++ + KV
Sbjct: 92 KPEY--DKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGF-- 147
Query: 155 THHG-LAINCDTD-LTWFNHITPCGIKDKQVTSLSKH------LSKDITVDTVVPLFKKH 206
HHG L +N D L + + + K +TS+ L IT + V +
Sbjct: 148 -HHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEA 206
Query: 207 FESVFECECSEVELDE 222
F + + +
Sbjct: 207 FFAHYGERVEAEIISP 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.043
Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 66/257 (25%)
Query: 21 IQEHY---VNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADF 77
++ +Y ++ +KT +PS + + + + +Y + +Y+ + KL
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQAL 144
Query: 78 YKTNRGGLITFHGPG-----QLVA-----YPIINLKHFTPSIKW---------------- 111
+ + G + Y + I W
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 112 ----------FVQSIEQTQEFSLNAG-LIPKYTGVFLDDEYKVCAI---GVHSSLYITHH 157
+ + + L + + + Y+ C + V ++
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA- 261
Query: 158 GLAINCDTDLTWFNHITPCGIKDKQVT-SLSKHLSKDITVDTVVPLFKKH-----FESVF 211
++C LT T + KQVT LS + I++D
Sbjct: 262 -FNLSCKILLT-----T----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 212 ECECSEVELDEEIKHLN 228
+C +L E+ N
Sbjct: 312 DCRPQ--DLPREVLTTN 326
Score = 29.4 bits (65), Expect = 1.0
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 184 TSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVEL-----DEEIKHL 227
T ++ KDI + +F+ F F+C+ + EEI H+
Sbjct: 11 TGEHQYQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Score = 27.9 bits (61), Expect = 3.1
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 44/172 (25%)
Query: 23 EHY-VNKLKTLISKPSNHSGTLLLLEHKPVY---------------TIGI--RSLKEYDE 64
+H +KL T+I N L E++ ++ + + + + D
Sbjct: 348 KHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 65 NLEL-KLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLK--HFTPSIKWFVQSIEQTQE 121
+ + KL+K K + I+ + + N H + V +
Sbjct: 405 MVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKT 458
Query: 122 FSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHI 173
F + LIP Y D+Y +S +I HH I +T F +
Sbjct: 459 FDSD-DLIPPY-----LDQY------FYS--HIGHHLKNIEHPERMTLFRMV 496
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin
synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE;
1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3
d.104.1.3
Length = 341
Score = 31.2 bits (71), Expect = 0.24
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 139 DEYKVC--AIGVHSSLYITHHGLAINCDTD-LTWFNHITPCGIKDK-------QVTSLSK 188
D K C A + + H L + D L ++ + K +VT++
Sbjct: 139 DGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIIN 198
Query: 189 HLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 223
L K ITV+ L ++ + + E +E EE
Sbjct: 199 ELPKKITVEKFRDLLLEYMKKEY-PEMTEYVFSEE 232
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose
binding protein, MBP fold, ABC transporter fold,
thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus
furiosus} SCOP: c.94.1.1
Length = 381
Score = 28.9 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 109 IKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYK 142
KW S E + +L G IP T V D E K
Sbjct: 284 AKWLTTSEESIKTLALELGYIPVLTKVLDDPEIK 317
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast
collaboratory for structural genomics, structure
initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP:
d.58.58.1
Length = 85
Score = 26.4 bits (59), Expect = 2.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 209 SVFECECSEVELDE 222
SVFE E + E +
Sbjct: 31 SVFEGEVTLAEFER 44
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 27.2 bits (61), Expect = 5.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 64 ENLELKLNKLGAD 76
+L L KLGAD
Sbjct: 439 RDLVEDLVKLGAD 451
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 26.7 bits (60), Expect = 7.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 64 ENLELKLNKLGAD 76
E LE KL KLGAD
Sbjct: 406 EKLEEKLKKLGAD 418
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 26.7 bits (60), Expect = 8.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 64 ENLELKLNKLGAD 76
E +E KL LGA+
Sbjct: 400 ERIEDKLRALGAN 412
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 26.0 bits (58), Expect = 9.6
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 80 TNRGGLITFHGP 91
+ GL+T+ GP
Sbjct: 124 YTKTGLVTYSGP 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,462,014
Number of extensions: 197175
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 20
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)