RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3135
(229 letters)
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 216
Score = 135 bits (341), Expect = 3e-40
Identities = 72/218 (33%), Positives = 96/218 (44%), Gaps = 19/218 (8%)
Query: 3 KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
+ + +LG V Y ++Q + + + TLLLLEH VYT G R+
Sbjct: 10 SAIDVRQLGTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHE 63
Query: 63 DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQS----IEQ 118
T+RGG IT+HGPGQLV YPII L + + + I+
Sbjct: 64 RPIDG-------TPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQV 116
Query: 119 TQEFSLNAGLIPK--YTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 176
+ L+AG + + KV AIGV S T HG A+NCD DL F I PC
Sbjct: 117 CADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPC 176
Query: 177 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 214
GI D VTSLS L + +TVD V + +
Sbjct: 177 GISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 214
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 99.0 bits (246), Expect = 8e-26
Identities = 31/209 (14%), Positives = 62/209 (29%), Gaps = 24/209 (11%)
Query: 36 PSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLV 95
L H IG + E + +L+ + K G + GG +H G L
Sbjct: 29 QYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDY-MKKNGIMLARRYTGGGAVYHDLGDLN 87
Query: 96 AYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVF--------LDDEYK 142
+ + I +++ + + L+A + E K
Sbjct: 88 FSVVRSSDDM--DITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKK 145
Query: 143 VCAIGVHSSLYITHHGLAINCDTDLTWFN---HITPCGIKDKQVTSLSKHLS-----KDI 194
+ A+ TDL + + +DK S + ++ D+
Sbjct: 146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDV 205
Query: 195 TVDTVVPLFKKHFESVFECECSEVELDEE 223
++D V + F + E + E+
Sbjct: 206 SIDEVRNALIRGFSETLHIDFREDTITEK 234
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 87.5 bits (216), Expect = 1e-21
Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 15/194 (7%)
Query: 42 TLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIIN 101
L L + IG + N + + + + GG FH G +
Sbjct: 33 VLFLWRNADTVVIGRAQNPWKECNTRR-MEEDNVRLARRSSGGGAVFHDLGNTCFTFMAG 91
Query: 102 LKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVF--LDDEYKVCAIGVHSSLYITHHGL 159
+ +I + + ++A + V ++ + KV + H
Sbjct: 92 KPEYDKTISTSIV-LNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHG 150
Query: 160 AINCDTDL---TWFNHITPCGIKDK-------QVTSLSKHLSKDITVDTVVPLFKKHFES 209
+ + DL + + + K +VT+L++ L IT + V + F +
Sbjct: 151 TLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELL-PGITHEQVCEAITEAFFA 209
Query: 210 VFECECSEVELDEE 223
+ +
Sbjct: 210 HYGERVEAEIISPN 223
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 82.5 bits (203), Expect = 8e-20
Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 14/203 (6%)
Query: 32 LISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGP 91
+ LL +KP +G + N + + + G + + GG +H
Sbjct: 21 AFKHLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDY-VRENGIEVVRRISGGGAVYHDL 79
Query: 92 GQLVAYPIINLKHF-TPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHS 150
L I K F + T + +D + K C
Sbjct: 80 NNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDGK-KFCGNAQAY 138
Query: 151 SLYITHHGLAINCDTDLTWFN---HITPCGIKDKQVTS-------LSKHLSKDITVDTVV 200
H + D DL+ ++ + K V S + L K ITV+
Sbjct: 139 INGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFR 198
Query: 201 PLFKKHFESVFECECSEVELDEE 223
L ++ + + E +E EE
Sbjct: 199 DLLLEYMKKEYP-EMTEYVFSEE 220
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 79.0 bits (194), Expect = 2e-18
Identities = 28/212 (13%), Positives = 49/212 (23%), Gaps = 34/212 (16%)
Query: 42 TLLLLEHKPVYTIGIR--SLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPI 99
TL H +GI+ L + +E L D N GGL G L +
Sbjct: 38 TLRAWVHHNTVVLGIQDSRLPQIKAGIEA-LKGFQHDVIVRNSGGLAVVLDSGILNLSLV 96
Query: 100 INL---KHFTPSIKWFVQSI-EQTQEFSLNAGL-------IPKYTGVFLDDEYKVCAIGV 148
+ + + I Q+ P + +D K I
Sbjct: 97 LKEEKGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSIDG-KKFAGISQ 155
Query: 149 H-SSLYITHHGLAINCDTDLT----WFNHITPCGIKDK------------QVTSLSKHLS 191
+ + + + + SLS+ L
Sbjct: 156 RRIRGGVAVQI-YLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLG 214
Query: 192 KDITVDTVVPLFKKHFESVFECECSEVELDEE 223
+ V V+ + L +
Sbjct: 215 QPHNVSDVLLKALMTLQQ-HGASLLTESLSAD 245
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 69.3 bits (169), Expect = 9e-15
Identities = 27/221 (12%), Positives = 57/221 (25%), Gaps = 34/221 (15%)
Query: 35 KPSNHSGTLLLLEHKPVYTIGIRS--LKEYDENLELKLNKLGADFYKTNRGGLITFHGPG 92
SN L + +G+ L + + + G + N GGL G
Sbjct: 38 NRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKE-IISRGYEPVVRNFGGLAVVADEG 96
Query: 93 QLVAYPIINLKHFTP-----SIKWFVQSIEQT-QEFSLNAGLIPKYTGVFLDDEYKVCAI 146
L +I V I +F + ++ +
Sbjct: 97 ILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEV-ETSYCPGKFDLSIN 155
Query: 147 G---VHSSLYITH----HGLAINCDTDL----TWFNHITPCGIKDKQ------------V 183
G + + ++ D + G+ D +
Sbjct: 156 GKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIM 215
Query: 184 TSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEI 224
+LS L +TV+ V+ + V + + + ++
Sbjct: 216 ANLSDLLDCPMTVEDVIDRMLISLKQVGFND-RLLMIRPDL 255
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
53953]}
Length = 188
Score = 27.0 bits (59), Expect = 1.4
Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 130 PKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKH 189
K+ L + + + V G+ +N + + TS+
Sbjct: 99 IKWPNDVLVNYKAIAGVLVEGKGDKIVLGIGLNVNNKV------------PNGATSMKLE 146
Query: 190 LSKDITVDTVVPLFKKHFESVFE 212
L ++ + +V + + ++
Sbjct: 147 LGSEVPLLSVFRSLITNLDRLYL 169
>d2noca1 d.230.6.1 (A:1-91) Putative periplasmic protein YahO
{Salmonella choleraesuis [TaxId: 28901]}
Length = 91
Score = 26.3 bits (58), Expect = 1.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 51 VYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPII 100
+ T G S + E+L K ++ GAD L + ++ I
Sbjct: 43 ISTTGEMSPLDAREDLIKKADEKGADVVV-----LTSGQTENKIHGTADI 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,796
Number of extensions: 38389
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 12
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)