RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3139
(708 letters)
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 136 bits (344), Expect = 2e-36
Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 12/220 (5%)
Query: 435 GMRNSQIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHWSYIGNSFPPTAAH 494
GMR + I+D + V + +E+ + GE EL + +++ R + Y+G SF +
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGF 60
Query: 495 GTHATDAEYRPDAKTNVKI-GDDILRVSYGSQYLDGTTKVNAILHCGIPTPLQRSVYTAI 553
G + Y P ++N KI D + + G QYLDGTT + +H G PT Q+ YT +
Sbjct: 61 GPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLV 120
Query: 554 LKGLIALVTTQFLPGSSLHRLEYLLEQPLLALALDYRPQRVHSIGEFLLVQE-------- 605
LKG IAL +F G++ +L+ L QPL LDY H +G FL V E
Sbjct: 121 LKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSISPA 180
Query: 606 DFNSTLNINFFGVVEPEYL---DCGIKIGQVIQVVPAYRE 642
N L EP Y GI+I ++ VV A
Sbjct: 181 PNNVPLKAGMILSNEPGYYKEGKYGIRIENLVLVVEAETT 220
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 68.6 bits (168), Expect = 3e-12
Identities = 58/341 (17%), Positives = 104/341 (30%), Gaps = 40/341 (11%)
Query: 271 KDFMSSKSVDVMVITALDQIAWLLNLRGKDNPFSPLFKAYFVISTSLCVLYLPKNKITPV 330
++ M +D +++T+ +L G D +A V + VL++
Sbjct: 18 RELMEEAGLDALLLTSPSNFYYLT---GFDAFGFERLQALLVPAEGEPVLFVRGRDEEAA 74
Query: 331 LRNYLGDIVIKPYDLVWTDLPEFVRTGKCLYLPDEANFLLYAWMKNAETAGFQDDKGYHI 390
+ W L +Y DE + G I
Sbjct: 75 ------------KETSWIKLENVE-----VYEDDEDPAAPLDLLGALLEE--LGLAGKRI 115
Query: 391 EGYWYTWRTAVDRWSI--DEVPPLKLLTGPSPVKDLKAYKNSAEAKGMRNSQIKDALVWV 448
+ + + +P +L+ V L+ K+ AE +R +
Sbjct: 116 GIESASIFLTLAAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALE 175
Query: 449 RLVHRIEKGIESGELWDELKVLECVDQLRGEHWSYIG--NSFPPTAAHGTHATDAEYRPD 506
+ I G+ E ++ +L SF A G +A Y P
Sbjct: 176 AALEAIRPGM------TEAEI---AAELEYALRKGGAEGPSFDTIVASGENAALPHYTPS 226
Query: 507 AKTNVKIGDDILRVSYGSQYLDGTTKVNAILHCGIPTPLQRSVYTAILKGLIALVTTQFL 566
+ D++ + G Y + + G P+ QR +Y A+L+ A +
Sbjct: 227 DRKLRD--GDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIR- 283
Query: 567 PGSSLHRLEYLLEQPLL-ALALDYRPQRV-HSIGEFLLVQE 605
PG + ++ Q L A Y H +G L V E
Sbjct: 284 PGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHE 324
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 58.1 bits (141), Expect = 2e-09
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 15/191 (7%)
Query: 434 KGMRNSQIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHWSYIGNSFPPTAA 493
+ MR + A + I G+ EL EL + G +FPP A
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAEL------EAAFLARGGARGPAFPPIVA 54
Query: 494 HGTHATDAEYRPDAKTNVKIGD-DILRVSYGSQYLDGTTKVNAILHCGIPTPLQRSVYTA 552
G +A Y P + + D D++ + G++Y + + G PTP QR +Y A
Sbjct: 55 SGPNAAVPHYIPSDR---VLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEA 111
Query: 553 ILKGLIALVTTQFLPGSSLHRLEYLLEQPLLALALD-YRPQRV-HSIGEFLLVQEDFNST 610
+L+ A + PG + ++ + L Y P + H IG L V ++
Sbjct: 112 VLEAQEAAIAAVK-PGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIG--LDVHDEGPYI 168
Query: 611 LNINFFGVVEP 621
V+EP
Sbjct: 169 SRGGNDRVLEP 179
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 39.6 bits (93), Expect = 0.001
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 30/100 (30%)
Query: 43 RLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLEYISGFT 102
RL LR +M G+ ++ + ++ + Y++GFT
Sbjct: 1 RLERLRELMAEAGLDALLLTSPEN----------------------------IRYLTGFT 32
Query: 103 GESGQG-VVTQTTAVLWTEAK-YWERADSELSGTEWTLCR 140
G G VVT A L T+A Y E A+ + E
Sbjct: 33 GSRGLALVVTADGATLLTDALRYTEAAEESVPDLEVIEYD 72
>gnl|CDD|223419 COG0342, SecD, Preprotein translocase subunit SecD [Intracellular
trafficking and secretion].
Length = 506
Score = 33.9 bits (78), Expect = 0.30
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 36 VTSDVNQRLSLLRSVMRSRGVS-VYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKR 94
+ + Q LRS +R GVS + V G+ V + + + H
Sbjct: 59 LKKRLEQLADDLRSRLRKEGVSYSGVRVEGNGITVPLRDAAELDKARKLLRLLHRGVVLF 118
Query: 95 LEYISGFTGESGQGVVTQTTAVL 117
L E + V Q +L
Sbjct: 119 LALTEAELDEIRKDAVQQNITIL 141
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding
domain. MDH is part of a widespread family of
homologous FMN-dependent a-hydroxy acid oxidizing
enzymes that oxidizes (S)-mandelate to phenylglyoxalate.
MDH is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate. This family occurs in both
prokaryotes and eukaryotes. Members of this family
include flavocytochrome b2 (FCB2), glycolate oxidase
(GOX), lactate monooxygenase (LMO), mandelate
dehydrogenase (MDH), and long chain hydroxyacid oxidase
(LCHAO).
Length = 361
Score = 31.0 bits (70), Expect = 2.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 684 IGEQLVGRGLHAEYRTLIKKTD 705
+ E LV R L A Y TL+ TD
Sbjct: 129 LAELLVKRALAAGYTTLVLTTD 150
>gnl|CDD|185129 PRK15207, PRK15207, long polar fimbrial outer membrane usher
protein LpfC; Provisional.
Length = 842
Score = 30.3 bits (68), Expect = 4.1
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 67 HQVSIIPGN---QGNSY--VCTKTKQHGPWD---KRLEYISGFTGESGQGVVTQTTAVLW 118
H+ S I GN Q +Y V Q W+ K+ +G+ G G+ V + A W
Sbjct: 500 HKRSQIQGNITQQLGAYGSVYFNMTQQDYWNDDGKQNSLSAGYNGRIGR--VNYSVAYTW 557
Query: 119 TEAKYWERADSELS-------GTEWTLCR--TDFTGRLTAKSNQSGA--SPRNVATSFGY 167
T++ W+ +D S G W+ R TD GR + SG RN++ S
Sbjct: 558 TKSPEWDESDRLWSFSMSIPLGRAWSNYRMTTDQNGRTNQQLGVSGTLLEDRNLSYS--- 614
Query: 168 IQRSMTDKVVGFFGHV 183
+Q T VG G V
Sbjct: 615 VQEGYTSNGVGNSGSV 630
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 29.4 bits (66), Expect = 5.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 433 AKGMRNSQIKDALVWVRLVHRIEKGIESGELWDELK 468
A G+R + +KD L R+E+ + LWDE+K
Sbjct: 108 AYGLRVNGVKDK---AYLAERVERSLRHAALWDEVK 140
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 29.7 bits (66), Expect = 5.9
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 17 LAGCYASGAHHNTSLAHSHVTS-DVNQRLSLLRSVMRSRGVSVY-------------IIV 62
L G +G HH LA+S + D++ R L R+++ S G +++ ++
Sbjct: 266 LIGLEVAGIHH---LAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVP 322
Query: 63 NGDDHQVSIIPGNQ-----GNSYVCTKTKQHGPWDKRLEY 97
+ QV+ P + G S CT + Q W KR EY
Sbjct: 323 SQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEY 362
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 28.6 bits (65), Expect = 7.8
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 485 GNSFPPTAAHGTHATDAEYRPDAKTNVKIGDDILRVSYGSQYLDG----TTKVNAILHCG 540
G SF A G ++ P + ++ GD +L + +G+ Y DG T+ A+ G
Sbjct: 46 GPSFDTIVASGPNSALPHGVPSDRK-IEEGDLVL-IDFGAIY-DGYCSDITRTVAV---G 99
Query: 541 IPTPLQRSVYTAILK 555
P+ + +Y +L+
Sbjct: 100 EPSDELKEIYEIVLE 114
>gnl|CDD|236970 PRK11756, PRK11756, exonuclease III; Provisional.
Length = 268
Score = 28.7 bits (65), Expect = 9.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 335 LGDIVIKPYDLVWTDL-------PEFVRTGKCLYLPDEANFLLYAWMKNAETAGFQD 384
+GD+ I P DL D+ ++RTGKC +LP+E W+ G D
Sbjct: 149 MGDMNISPTDL---DIGIGEENRKRWLRTGKCSFLPEER-----EWLDRLMDWGLVD 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.423
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,396,372
Number of extensions: 3548036
Number of successful extensions: 2798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2793
Number of HSP's successfully gapped: 17
Length of query: 708
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 604
Effective length of database: 6,324,786
Effective search space: 3820170744
Effective search space used: 3820170744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.2 bits)