RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3139
(708 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 415 bits (1070), Expect = e-137
Identities = 179/710 (25%), Positives = 306/710 (43%), Gaps = 134/710 (18%)
Query: 38 SDVNQRLSLLRSVMR-----SRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWD 92
++ L LR MR + + YII +GD HQ + Y+ P D
Sbjct: 4 KVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQ---------SEYI-------APCD 47
Query: 93 KRLEYISGFTGESGQGVVTQTTAVLWTEAKYWERADSELSGTEWTLCRTDFTGRLTAKSN 152
R ++SGF G +G ++T+ A +WT+ +Y+ +A ++ + WTL +
Sbjct: 48 CRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQM-DSNWTLMK------------ 94
Query: 153 QSGASPRNVATSFGYIQRSMTDKVVGFFGHVKSPNMNQWIATHAKYTDKIASDPLKWEFS 212
G +P W+ + ++ DPL
Sbjct: 95 ---------------------------MGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTD 127
Query: 213 EWLNLDNYLRAHGLQLNLLTENLVDSIWYPKPSLPPSVVFIHPLEYAGEPWENKVQSMKD 272
W + LR+ G L + ENLVD IW +P P + L+Y G W++KV ++
Sbjct: 128 YWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRL 187
Query: 273 FMSSKSVDVMVITALDQIAWLLNLRGKDNPFSPLFKAYFVISTSLCVLYLPKNKI-TPVL 331
M+ ++V V+TALD+IAWL NLRG D +P+F +Y +I +L++ ++I P +
Sbjct: 188 KMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSV 247
Query: 332 RNYLGD---------IVIKPYDLVWTDLPEF---VRTGKCLYLPDEANFLLYAWMKNAET 379
+ +L I + PY + ++L + + +++ D+A++ + +
Sbjct: 248 KEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETIPKDH- 306
Query: 380 AGFQDDKGYHIEGYWYTWRTAVDRWSIDEVPPLKLLTGPSPVKDLKAYKNSAEAKGMRNS 439
+ +P+ KA KNSAE++GMR +
Sbjct: 307 ---------------------------------RCCMPYTPICIAKAVKNSAESEGMRRA 333
Query: 440 QIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHWSYIGNSFPPTAAHGTHAT 499
IKDA+ L + +EK + G + E+ + ++ R + ++ SFP ++ G
Sbjct: 334 HIKDAVALCELFNWLEKEVPKGGV-TEISAADKAEEFRRQQADFVDLSFPTISSTGPTGA 392
Query: 500 DAEYRPDAKTNVKI-GDDILRVSYGSQYLDGTTKVNAILHCGIPTPLQRSVYTAILKGLI 558
Y P +TN + D++ + G+QY DGTT V +H PT ++ +T +LKG I
Sbjct: 393 IIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHI 452
Query: 559 ALVTTQFLPGSSLHRLEYLLEQPLLALALDYRPQRVHSIGEFLLVQE-----DFNSTLNI 613
A+ F G+ H L+ L LDY H +G FL V E + + +
Sbjct: 453 AVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDE 512
Query: 614 NFF-GVV---EP------EYLDCGIKIGQVIQVVPAYRE------RYMTMEVRSLFPFES 657
G++ EP + GI+I V+ VVP + +T+E +L P ++
Sbjct: 513 PLEAGMIVTDEPGYYEDGAF---GIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQT 569
Query: 658 RLIDTSQLEPHEIRWINEFHATVRYVIGEQLVGRGLHAEYRTLIKKTDPL 707
++ID L E W+N +H T R VIG++L +G LI++T P+
Sbjct: 570 KMIDVDSLTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQPI 619
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 60.8 bits (148), Expect = 3e-11
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 28/107 (26%)
Query: 37 TSDVNQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLE 96
+ + QRL M +G+ ++ +
Sbjct: 5 SGFLEQRLGHCLRQMAEKGLEALLVTH----------------------------LTNSY 36
Query: 97 YISGFTGESGQGVVTQTTAVLWTEAKYWERADSELSGTEWTLCRTDF 143
Y++GF+G + ++T VL T+++Y A + + G + RT
Sbjct: 37 YLTGFSGTAATVLITAKRRVLITDSRYTLLAKASVEGFDIIESRTPL 83
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 56.6 bits (137), Expect = 7e-10
Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 28/99 (28%)
Query: 37 TSDVNQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLE 96
++ + +RL + + G+ ++ +
Sbjct: 1 SNAMQRRLERFDAKLVQSGLDALLVTG----------------------------QNNIY 32
Query: 97 YISGFTGESGQGVVTQTTAVLWTEAKYWERADSELSGTE 135
Y++ F G + +T+ + T+++Y A + G +
Sbjct: 33 YLTDFWGTNATVFITKNRRLFLTDSRYTLIAKQSVHGFD 71
Score = 27.7 bits (62), Expect = 6.3
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 264 ENKVQSMKDFMSSKSVDVMVITALDQIAWLLNLRG 298
+ +++ + +D +++T + I +L + G
Sbjct: 5 QRRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWG 39
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 55.5 bits (134), Expect = 2e-09
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 29/112 (25%)
Query: 37 TSDVNQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLE 96
+ QR L + + ++ + ++ + +
Sbjct: 7 DTRFLQRRRALSAQLAAKRIDAMLVTH----------------------------LTHIR 38
Query: 97 YISGFTGESGQGVVTQ-TTAVLWTEAKYWERADSELSGTEWTLCRTDFTGRL 147
Y+SGFTG + ++ + +A + T+ +Y + ++ E + R L
Sbjct: 39 YLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLMARNCAPALL 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 69/538 (12%), Positives = 145/538 (26%), Gaps = 186/538 (34%)
Query: 28 NTSLAHSHVTSDVNQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQ 87
N A +V+ Q LR + + ++++G G KT
Sbjct: 123 NQVFAKYNVSRL--QPYLKLRQALLELRPAKNVLIDGV-------LG-------SGKT-- 164
Query: 88 HGPW-------DKRLEYISGFTGESGQGVVTQTTAVLWTEAKYWERADSELSGTEWTLCR 140
W +++ F + W K ++ L L
Sbjct: 165 ---WVALDVCLSYKVQCKMDF-------------KIFWLNLKNCNSPETVLE-MLQKLLY 207
Query: 141 TDFTGRLTAKSNQSGASPRNVATSFGYIQRSMTDKVVGFFGHVKSPNM-----NQWIATH 195
T++S+ S + S+ ++ N N A
Sbjct: 208 -QIDPNWTSRSDHSSNIKLRI--------HSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 196 AKY----------T-DKIASDPLKWEFSEWLNLDNYLRAHGLQLNLLTENLVDSIWYPKP 244
T K +D L + ++LD++ L + + L+ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQ 316
Query: 245 SLPPSVVFIHPLEYA--GEP-------WENKVQSMKDFMS---SKSVDVMVITALDQIAW 292
LP V+ +P + E W+N D ++ S++V L+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-----LE---- 367
Query: 293 LLNLRGKDNPFSPLFKAYFVISTSLCVLYLPKN-KITP-VLRNYLGDIVIKPYDLVWTDL 350
++ F L V P + I +L L+W D+
Sbjct: 368 -----------PAEYRKMFD---RLSV--FPPSAHIPTILL------------SLIWFDV 399
Query: 351 P---------EFVRTGKCL----------YLPD---------EANFLL-------YAWMK 375
+ + L +P E + L Y K
Sbjct: 400 IKSDVMVVVNKLHK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 376 NAETAGFQDDKGYHIEGYWYTW-----RTAVDRWSIDEVPPL---------KL------L 415
++ +++ Y+Y+ + + + K+
Sbjct: 458 TFDSDDLIPP---YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 416 TGPSPV----KDLKAYKNSAEAKGMRNSQIKDALVWVRLVHRIEKGIESGELWDELKV 469
+ + LK YK + ++ +A+ + + +IE+ + + D L++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIEENLICSKYTDLLRI 570
Score = 48.7 bits (115), Expect = 6e-06
Identities = 80/474 (16%), Positives = 141/474 (29%), Gaps = 165/474 (34%)
Query: 344 DLVWTDLPEFVRTGKCLYLPD---------------------EANFLLYAWM---KNAET 379
D++ FV C + D L+ W K E
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEM 78
Query: 380 A------GFQDDKGYHIEGYWYTWRTAVDRWSIDEVPPL-----------KLLTGPSPVK 422
+ + Y + + ++ P +L
Sbjct: 79 VQKFVEEVLRIN---------YKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 423 DLKAYKNSAEAKGMRNSQIKDALVWVR-----LVHRIEKGIESGELW------DELKVLE 471
K + + +++ AL+ +R L+ + G SG+ W KV
Sbjct: 128 --KYNVSRLQPY----LKLRQALLELRPAKNVLIDGV-LG--SGKTWVALDVCLSYKVQC 178
Query: 472 CVDQLRGEHWSYIGNSFPPTA-----AHGTHATDAEY--RPDAKTNVKIGDDILRVSYGS 524
+D W + N P + D + R D +N+K+ ++ +
Sbjct: 179 KMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELR 235
Query: 525 QYLDGTTKVNA--ILHCGIPTPLQRSVYTA-ILKGL-----IALVTTQ------FLPGS- 569
+ L N +L +V A I L+TT+ FL +
Sbjct: 236 RLLKSKPYENCLLVL---------LNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAAT 285
Query: 570 ----SLHRLEYLLEQP----LLALALDYR------------PQRVHSIGEFLLVQEDFNS 609
SL L LL LD R P+R+ I E + D +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLA 342
Query: 610 TLNINFFGVVEPEYLDCGIKIGQVIQVV-----PA-YRERYMTMEVRSLFPFESRLIDTS 663
T + N+ ++++C K+ +I+ PA YR+ + + S+FP S I T
Sbjct: 343 TWD-NW------KHVNC-DKLTTIIESSLNVLEPAEYRKMFDRL---SVFP-PSAHIPTI 390
Query: 664 QLEPHEIRWINEFHATVRYVIGEQLVGRGL------------HAEYRTLIKKTD 705
L + W + + V V+ +L L + Y L K +
Sbjct: 391 LL---SLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Score = 43.3 bits (101), Expect = 3e-04
Identities = 92/615 (14%), Positives = 170/615 (27%), Gaps = 142/615 (23%)
Query: 39 DVNQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLEYI 98
D + +S++ + I+ + + +KQ E +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-------FWTLLSKQE-------EMV 79
Query: 99 SGFTGESGQGVVTQTTAVLWTEAKYWERADSELSGTEWTLCRTDF--TGRLTAKSNQSGA 156
F E V+ L + K E+ + + R ++ AK N S
Sbjct: 80 QKFVEE----VLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 157 SPRNVATSFGYIQRSMTDKVV-GFFGHVKSPNMNQWIATHAKYTDKIASDPLKWEFSE-- 213
P R + ++ G G K+ W+A S ++ +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALDV-----CLSYKVQCKMDFKI 184
Query: 214 -WLNLDNYLRAHGL--QLNLLTENLVDSIWYPKPSLPPSVVFIHPLEYAGEPWENKVQSM 270
WLNL N + L L + D W + ++ + + + ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNI--KLRIH-SIQAELRRLLKS 240
Query: 271 KDFMSSKSV--DV---MVITALD---QIAWLLNLRGKDNPFSPLFKAYFVISTSLCVLYL 322
K + + V +V A + +I LL R K IS + L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 323 PKNKITPVLRNYLGDIVIKPYDLVWTDLPEFVRTGKCLYL----------PDEANFLLYA 372
+++ +L YL +P DLP V T L + +
Sbjct: 299 TPDEVKSLLLKYLD---CRP-----QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 373 WMKNAETA-----GFQDDKGYHIEGYWYTWRTAVDRWSI--DEVP-PLKLLT---GPSPV 421
T + Y R DR S+ P LL+
Sbjct: 351 NCDKLTTIIESSLNVLEPAEY---------RKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 422 KDLKAYKNSAEAKGMRNSQIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHW 481
D+ N + Q K++ + + ++ K E +++ + +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--- 458
Query: 482 SYIGNSFPPTAA------H-GTHATDAEYRPDAKTNVKIGDDILRVSYGSQYLDGTTKVN 534
+ + P H G H + E+ + R +LD
Sbjct: 459 -FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER--------MTLFR----MVFLDFRFLEQ 505
Query: 535 AILHCGIPTPLQRSV--------------------YTAILKGLIALVTTQFLP--GSSLH 572
I H S+ Y ++ ++ FLP +L
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-----DFLPKIEENLI 560
Query: 573 RLEYLLEQPLLALAL 587
+Y LL +AL
Sbjct: 561 CSKYT---DLLRIAL 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 4e-06
Identities = 79/535 (14%), Positives = 139/535 (25%), Gaps = 220/535 (41%)
Query: 21 YASGAHHNTSLAHSHVTSDVNQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSY 80
+ S +L R+V + I G QGN+
Sbjct: 127 ITARIMAKRPFDKKS-NS------ALFRAV-GEGNAQLVAIFGG-----------QGNTD 167
Query: 81 VCTKTKQHGPWDKRLE-------YISGFTGESGQGVVTQTTAVLWTEAKYWERADSELSG 133
++ E Y G+ ++ + L + A+ +
Sbjct: 168 DY--------FE---ELRDLYQTY-HVLVGD----LIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 134 T----EWTLCRTDFTGRLTAKSNQSGAS---------PRNVATSFG-YIQRSMTDKVVGF 179
EW L SN P Y+ +T K++GF
Sbjct: 212 GLNILEW----------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYV---VTAKLLGF 258
Query: 180 FGHVKSP-NMN---QWIATHAKYT---------------DKIASDPLKWEFSEWLNLDNY 220
+P + + H++ + F ++ +
Sbjct: 259 -----TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--FIGV--- 308
Query: 221 LRAHGLQLNLLTENLVDSIWYPKPSLPPSVVFIHPLEYAGEPWENKVQSM---KDFMSSK 277
R + YP SLPPS++ E + E E M + ++ +
Sbjct: 309 -RCYEA--------------YPNTSLPPSIL-----EDSLENNEGVPSPMLSISN-LTQE 347
Query: 278 SVDVMVITALDQ---------IAWLLNLRGKDNPFSPLFKAYFVIS---TSLC--VLYLP 323
V + + I+ L+N G N V+S SL L L
Sbjct: 348 QVQ-DYVNKTNSHLPAGKQVEIS-LVN--GAKN---------LVVSGPPQSLYGLNLTLR 394
Query: 324 KNKITPVLRNYLGDIVIKPYDLVWTDLPEFVRTGKCLYLPDEANF---LLYAWMKNAETA 380
K K L D P+ +F +LP + F LL A
Sbjct: 395 KAKAPSGL-----DQSRIPFS---ERKLKFSNR----FLPVASPFHSHLL----VPASDL 438
Query: 381 GFQDDKGYHIEGYWYTWRTAVDRWSIDEVPPLKLLTGPSPVKDLKAYKNSAEAKGMRNSQ 440
+D ++ ++ + +++ PV D + G + +
Sbjct: 439 INKDLVKNNVS------------FNAKD---IQI-----PVYDTFDGSDLRVLSGSISER 478
Query: 441 IKDALV-----WVR----------------------LVHRIEKG-----IESGEL 463
I D ++ W L HR + G I +G L
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 49.3 bits (117), Expect = 4e-06
Identities = 104/657 (15%), Positives = 176/657 (26%), Gaps = 266/657 (40%)
Query: 140 RTDFTGRLTAKSNQSGA-----SPRNVATSF-GYIQRSMTDKVVGFFGHVKSPNMNQWIA 193
+ F L + A +P + F GY+ + VG F V
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV---------- 83
Query: 194 THAKYTDKIASDPLK---WEFSEWLNLDNYLRA---HGLQLNLLTENLVDSIWYPKPSLP 247
L EF + YL H L LL EN +
Sbjct: 84 -------------LNLCLTEFE-----NCYLEGNDIHALAAKLLQEN-------DTTLVK 118
Query: 248 PSVV---FIHPLEYAGEPWENKVQSMKDFMSSKSVDVMVITALDQIAWLLNLRGKDNPFS 304
+ +I A P++ K S A + +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNS---------------------ALFRAVGEGNAQLV 157
Query: 305 PLF------KAYFVISTSLCVLYLPKNKITPVLRNYLGDIVIKPYDLVWTDLPEFVRTGK 358
+F YF L LY + VL +GD++ L E +RT
Sbjct: 158 AIFGGQGNTDDYF---EELRDLY----QTYHVL---VGDLI----KFSAETLSELIRT-- 201
Query: 359 CLYLPDEANFL------LYAWMKNAETAGFQDDKGYHIEGYWYTWRTAVDRWSIDEVPPL 412
+A + + W++N +D Y + S PL
Sbjct: 202 ----TLDAEKVFTQGLNILEWLENPSNTPDKD----------YLLSIPI---SC----PL 240
Query: 413 KLLTGPSPVKDLKAYKNSAEAKGMRNSQIKDALVWVRLVHRIEKG------IESGELWDE 466
+ L Y +A+ G +++ L H +G I + W+
Sbjct: 241 IGVI------QLAHYVVTAKLLGFTPGELRSYLKGA-TGH--SQGLVTAVAIAETDSWES 291
Query: 467 LK--VLECVDQLRGEHWSYIG----NSFPPTAAHGTHATDAEYRPDA-KTNVKIGDDI-- 517
V + + L +IG ++P T+ P + +++ + +
Sbjct: 292 FFVSVRKAITVL-----FFIGVRCYEAYPNTSL----------PPSILEDSLENNEGVPS 336
Query: 518 --LRVSYG---SQYLDGTTKVNAILHCGIPTPLQRSVYTA--------ILKG----LIAL 560
L +S Q D K N+ L P + V + ++ G L L
Sbjct: 337 PMLSIS-NLTQEQVQDYVNKTNSHL------PAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 561 VT--------------------------TQFLPGSS-LHRLEYLLEQPLLALALDYRPQR 593
+FLP +S H LL A D +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-------HLLVPASDLINKD 442
Query: 594 VHSIGEFLLVQEDFNSTLNINFFGVVEPEY--LDCGIKIGQVIQVVPAYRERYMTMEVRS 651
+ +D + I P Y D G ++V+ S
Sbjct: 443 LVK-NNVSFNAKD----IQI-------PVYDTFD-----GSDLRVLSG-----------S 474
Query: 652 LFPFESRLIDTSQLEPHEIRW--INEFHAT------------VRYVIGEQLVGRGLH 694
+ R++D P ++W +F AT + + G G+
Sbjct: 475 ISE---RIVDCIIRLP--VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Score = 42.0 bits (98), Expect = 7e-04
Identities = 38/223 (17%), Positives = 62/223 (27%), Gaps = 84/223 (37%)
Query: 518 LRVSYGSQYLDGTTKVNAILHCGIPTPLQRSVYTAILKGLIALVTTQFLPGSSLHRLEYL 577
L +S+GS L + P T F S L + ++
Sbjct: 9 LTLSHGS------------LEHVLLVP-----------------TASFFIASQL-QEQFN 38
Query: 578 --LEQPLLALALDYRPQ-RVHSIGEFL-----LVQED----FNSTLN--INFFGVVEPEY 623
L +P A D P +G+FL LV+ F+ LN + F E Y
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCY 95
Query: 624 L--------------DCGIKIGQVIQVVPAYRERYMTMEVRSLFPFESRLIDTSQLEPHE 669
L + + + +++ Y + + S L +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 670 IRWINEFHATVRYVI-GEQLVG---------RGLHAEYRTLIK 702
+ I G Q G R L+ Y L+
Sbjct: 156 L-----------VAIFGGQ--GNTDDYFEELRDLYQTYHVLVG 185
Score = 41.2 bits (96), Expect = 0.001
Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 60/210 (28%)
Query: 487 SFP-PTAAHGTHATD-----AEYRPDAKTNVKIGDD--ILRVSYGSQYLDGTTKVNAILH 538
PTA+ A+ + P+ T DD ++L + +
Sbjct: 19 VLLVPTASFF-IASQLQEQFNKILPEP-TEGFAADDEPTTPAELVGKFLGYVSSLVE--- 73
Query: 539 CGIPTPLQRSVYTAILKGLIALVTTQFLPGSSLH----RLEYLLEQPLL----------- 583
P + + +L + +L G+ +H +L + L+
Sbjct: 74 -----PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 584 ALALDYRPQRVHSIGEFLLVQEDFNSTLNINFFGVVEPEYLDCGIKIGQVIQVVPAYRER 643
A + RP S + N+ L + FG GQ +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFG-------------GQ------GNTDD 168
Query: 644 YMTMEVRSLF----PFESRLIDTS--QLEP 667
Y E+R L+ LI S L
Sbjct: 169 YFE-ELRDLYQTYHVLVGDLIKFSAETLSE 197
Score = 37.0 bits (85), Expect = 0.026
Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 54/188 (28%)
Query: 124 WERADSELSGTEWTLCRTDFTGRLTAKSNQSGASPRNVATSFGYIQRSMTDKVVGFFGHV 183
W RAD+ T F+ +N P N+ FG G G
Sbjct: 1646 WNRADNHFKDTY------GFSILDIVINN-----PVNLTIHFG-----------GEKGKR 1683
Query: 184 KSPNMNQWIATHAKYTDKIASDPLKWEFSEWLNLDNYLRAHGLQLNLLTEN-----LVDS 238
N + + K+ ++ + E +E + GL L+ T+ +
Sbjct: 1684 IRENYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-LS-ATQFTQPALTLME 1740
Query: 239 I-----WYPKPSLPPSVVFI-HPL-EYAGEPWENKVQSMKDFMSSKSVDVMVITALDQIA 291
K +P F H L EYA ++S + DVM +++ +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAA-------------LASLA-DVM---SIESLV 1783
Query: 292 WLLNLRGK 299
++ RG
Sbjct: 1784 EVVFYRGM 1791
Score = 35.8 bits (82), Expect = 0.066
Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 82/198 (41%)
Query: 422 KDLKAYKNSAEAKGMRNSQIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHW 481
DL YK S A+ ++W+ D + +
Sbjct: 1633 MDL--YKTSKAAQ---------------------------DVWNR------ADNHFKDTY 1657
Query: 482 SY----IGNSFPPTAAHGTHATDAEYRPDAKTNVKIGDDILRVSYGSQYLDGTTKVNAIL 537
+ I + P H + + +I ++ + + +DG K I
Sbjct: 1658 GFSILDIVINNPVNLT--IHFGGEKGK-------RIRENYSAMIF-ETIVDGKLKTEKIF 1707
Query: 538 HCGIPTPLQRSVYTAILKGLIALVTTQFLPGSSLHRLEYLLEQP---LLALALDYR---- 590
I + + KGL++ TQF QP L+ A +
Sbjct: 1708 K-EINEHSTSYTFRSE-KGLLSA--TQFT-------------QPALTLMEKAA-FEDLKS 1749
Query: 591 ----PQRV----HSIGEF 600
P HS+GE+
Sbjct: 1750 KGLIPADATFAGHSLGEY 1767
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 47.2 bits (113), Expect = 1e-05
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 28/116 (24%)
Query: 42 QRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLEYISGF 101
+++ LRS G+ ++ N Y++ F
Sbjct: 5 EKIERLRSAFDEAGIDGILLTNEHS----------------------------RRYMANF 36
Query: 102 TGESGQGVVTQTTAVLWTEAKYWERADSELSGTEWTLCRTDFTGRLTAKSNQSGAS 157
TG +G ++++ A T+ +Y E+A + G E + + + G
Sbjct: 37 TGTAGVVLISKKRAQFITDFRYVEQASKQAVGYEIVQHAGLIIDEVAKQVKELGIQ 92
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 42.2 bits (100), Expect = 4e-04
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 23/115 (20%)
Query: 43 RLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLEYISGFT 102
R L ++ G+ ++I+N ++ Y SGFT
Sbjct: 3 RSERLIQLISEEGIDAFLIMNIENSA-----------------------RASSVYFSGFT 39
Query: 103 GESGQGVVTQTTAVLWTEAKYWERADSELSGTEWTLCRTDFTGRLTAKSNQSGAS 157
G ++++ T +L T+++Y +A E + DF L N
Sbjct: 40 GSFSIILISENTRLLITDSRYTVQAKQETDFEVREVKGGDFIDVLKKTVNDLKIK 94
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 38.3 bits (90), Expect = 0.007
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 29/91 (31%)
Query: 41 NQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLEYISG 100
N+++ + M + +I + + YISG
Sbjct: 5 NEKVKKIIEFMDKNSIDAVLIAKNPN----------------------------VYYISG 36
Query: 101 FTGESGQGVV-TQTTAVLWTEAKYWERADSE 130
+ +G ++ T +A L+ +E A E
Sbjct: 37 ASPLAGGYILITGESATLYVPELEYEMAKEE 67
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 34.2 bits (79), Expect = 0.13
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 32/99 (32%)
Query: 41 NQRLSLLRSVMRSRGVSVYIIVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDKRLEYISG 100
R + LR+ + + + I + + + Y S
Sbjct: 24 ANRQARLRAHLAAENIDAAIFTSYHN----------------------------INYYSD 55
Query: 101 FTG---ESGQG-VVTQTTAVLWTEAKYWERADSELSGTE 135
F VVT+ + + + GT+
Sbjct: 56 FLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTVGTD 94
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 32.2 bits (74), Expect = 0.58
Identities = 41/260 (15%), Positives = 83/260 (31%), Gaps = 44/260 (16%)
Query: 364 DEANFLLYAWMKNAETAGFQDDKGYHIEGYWYTWRTAVDRWSIDEVPPLKLLTGPSPVKD 423
D + D T A + ++ P + + + +
Sbjct: 108 DSFEKTMSNIFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICE 167
Query: 424 LKAYKNSAEAKGMRNS-QI-----KDALVWVRLVHRIEKGIESGELWDELKVLECVDQLR 477
L+ +K E + ++ + + + L + +E +E+ + LK
Sbjct: 168 LRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAK-ADMMEYELEA-QFDFTLKSSGI----- 220
Query: 478 GEHWSYIGNSFPPTAAHGTHATDAEYRPDAKTNVKIGDDILRVSYGSQYLDG-------T 530
+H ++ A G +AT Y + ++ GD +L + G+Q D T
Sbjct: 221 -KHHAF-----NTILASGKNATVLHYEDNDAQ-IQNGDLVL-LDLGAQK-DYYNADISYT 271
Query: 531 TKVNAILHCGIPTPLQRSVYTAILKGLIALVTTQFLPGSSL---HRL-EYLLEQPLLALA 586
N G + Q+ +Y +L L T PG + + +L + A+
Sbjct: 272 FPAN-----GTFSSRQKQIYNIVLNALKE-TTEIIKPGLKFAALNEHAKKVLAEGCKAVG 325
Query: 587 L-----DYRPQRVHSIGEFL 601
L + H + FL
Sbjct: 326 LIQEDEELSKYYYHGVSHFL 345
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.5 bits (68), Expect = 1.4
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 22/86 (25%)
Query: 243 KPSLPPSVVFIHPLE----------Y---AGEPWEN---KVQSMKDFMSSKSVDVMVITA 286
K +PP + + LE + A EP+EN ++ + S +
Sbjct: 138 KAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDG 197
Query: 287 LDQIAWLLNLRGKDNPFSPLFKAYFV 312
+D++ + K Y+V
Sbjct: 198 VDELNKKCTFWDAIS------KLYYV 217
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
PDB: 3peb_A*
Length = 132
Score = 29.7 bits (67), Expect = 1.6
Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 265 NKVQSMKDFMSSKSVDVMVITALDQIAWLLNLRGKDNPFSPLFKAYFVISTSLCVLYLPK 324
+K+ ++ + S ++ V + + +L +P FV +L++P
Sbjct: 3 SKLNRIRHHLHSVQAELAVFSDPVTVNYLTGFFC--DPHERQM-FLFVYEDRDPILFVPA 59
Query: 325 NKITPVLRNYLGDIVI-----KPYDLVWTDLPEFVRTGKCLYLPDEANFLLYAWMKNAET 379
+++ ++ + P+ + ++LP F K L D N + ++
Sbjct: 60 LEVSRAKQSVPFPVFGYIDSENPWQKIASNLPSF-SVSKVLAEFDNLNVTKFQGLQTVFD 118
Query: 380 AGFQD 384
F++
Sbjct: 119 GHFEN 123
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 30.5 bits (69), Expect = 2.2
Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 227 QLNLLTENLVDSIWYPKPSLPPSVVFIHPLEYAGEPWENKVQSMKDFMSSKSVDVMVITA 286
+L L D + L ++ + +E+ + + + DF S+S V +
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEF----DDCTLNGLGDFNPSESDVVSELGK 282
Query: 287 LDQIAWLLNLRGKDNPFSPLFKAYFVISTSLCVLYLPKNKIT 328
++ + + L + + + + + +K+
Sbjct: 283 VETVT-IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 29.9 bits (68), Expect = 3.4
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 24/84 (28%)
Query: 430 SAEAKGMRNSQIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHWSYIGNSFP 489
+ G K+ L R V+ + EL+ EL L
Sbjct: 217 LDKGSGEFAKFFKEFLNQTRPVNDTK---SFLELFKELHTL------------------- 254
Query: 490 PTAAHGTHATDAEYRPDAKTNVKI 513
H A + E + A N I
Sbjct: 255 --FVHMVWANEEEIQTIASYNAHI 276
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein,
cell MEMB membrane, transmembrane, virulence, membrane
protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Length = 197
Score = 28.5 bits (63), Expect = 5.8
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 61 IVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDK 93
++ + + ++PG YV + ++ W +
Sbjct: 11 LLGQEKERFQVLPGRDKMLYVAAQNERDTLWAR 43
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 28.8 bits (65), Expect = 7.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 491 TAAHGTHATDAEYRPDAKTNVKIG 514
H THA AE A++ G
Sbjct: 266 CLVHATHADPAEVAAMARSGAVAG 289
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein,
cell membrane, membrane, transmembrane, virulence;
2.80A {Salmonella typhimurium}
Length = 227
Score = 28.5 bits (63), Expect = 7.5
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 61 IVNGDDHQVSIIPGNQGNSYVCTKTKQHGPWDK 93
++ + + ++PG YV + ++ W +
Sbjct: 11 LLGQEKERFQVLPGRDKMLYVAAQNERDTLWAR 43
>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus}
SCOP: a.45.1.1 c.47.1.5
Length = 206
Score = 27.8 bits (62), Expect = 9.6
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 15/61 (24%)
Query: 256 LEYAGEPWENKVQSMKDFMSSKS-----------VDVMVIT----ALDQIAWLLNLRGKD 300
A + +E+ + + F+ K+ VD + +A G
Sbjct: 22 FALADQKYEDVRLTQETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGFAGAT 81
Query: 301 N 301
Sbjct: 82 P 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.423
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,090,758
Number of extensions: 671717
Number of successful extensions: 1724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1704
Number of HSP's successfully gapped: 38
Length of query: 708
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 608
Effective length of database: 3,909,693
Effective search space: 2377093344
Effective search space used: 2377093344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)