RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3139
         (708 letters)



>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
           coli [TaxId: 562]}
          Length = 262

 Score = 35.2 bits (80), Expect = 0.020
 Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 4/195 (2%)

Query: 428 KNSAEAKGMRNSQIKDALVWVRLVHRIEKGIESGELWDELKVLECVDQLRGEHWSYIGNS 487
           K   + + MR +    A V   +   ++ G+ +GEL         V++          + 
Sbjct: 4   KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICN-DYIVNEQHAVSACLGYHG 62

Query: 488 FPPTAAHGTHATDAEYRPDAKTNVKIGDDILRVSYGSQYLDGTTKVNAILHCGIPTPLQR 547
           +P +     +       PD    +K G DI+ +             + +   G PT +  
Sbjct: 63  YPKSVCISINEVVCHGIPDDAKLLKDG-DIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 121

Query: 548 SVYTAILKGLIALVTTQFLPGSSLHRLEYLLEQPLLALALDY-RPQRVHSIGEFLLVQED 606
            +     + L   +     PG +L  +   +++ + A      R    H IG     +  
Sbjct: 122 RLCRITQESLYLALRMVK-PGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 180

Query: 607 FNSTLNINFFGVVEP 621
                +     V++P
Sbjct: 181 VLHYDSRETNVVLKP 195


>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
           {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 31.6 bits (71), Expect = 0.27
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 446 VWVRLVHRIEKGIESGELWDEL--KVLECVDQLRGEHWSYIGNSFPPTAAHGTHATDAEY 503
           + V+L  R EK I S E+WD     +   +++        +G              D   
Sbjct: 175 IVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLD 234

Query: 504 RPDAKTNVKIGDDILRVSYGSQYL--DGTTKVNAILHCGI 541
           R      V++ D  L     + Y+  D   KV  ++H  I
Sbjct: 235 RAWQCGTVQL-DFSLPSRLSASYVGEDNERKVPVMIHRAI 273


>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 344

 Score = 27.9 bits (60), Expect = 5.0
 Identities = 12/91 (13%), Positives = 26/91 (28%)

Query: 314 STSLCVLYLPKNKITPVLRNYLGDIVIKPYDLVWTDLPEFVRTGKCLYLPDEANFLLYAW 373
             S+  + L  N I      +L + +    DL   +  +         +P+    LL A 
Sbjct: 30  DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 89

Query: 374 MKNAETAGFQDDKGYHIEGYWYTWRTAVDRW 404
           +K  +    +                 + + 
Sbjct: 90  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120


>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp.
           [TaxId: 512]}
          Length = 318

 Score = 27.1 bits (58), Expect = 8.4
 Identities = 6/35 (17%), Positives = 10/35 (28%)

Query: 240 WYPKPSLPPSVVFIHPLEYAGEPWENKVQSMKDFM 274
             P+ +    +  IH     G  WE        + 
Sbjct: 51  QIPQRAKRYPITLIHGCCLTGMTWETTPDGRMGWD 85


>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
           {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 182

 Score = 26.6 bits (58), Expect = 8.5
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 240 WYPKPSLPPSVVFIHPLEYAGEPWENKVQSMKDFMSSKSVDVMVITALDQIAWLLNLRGK 299
           +      P + +        G   +    ++  +M+S    VMV+     +  +  L G 
Sbjct: 68  YQELGIDPRAKIGTDDPVEVGRIIKR---NLVKYMTSGPNVVMVLKGNRAVEIVRKLVGP 124

Query: 300 DNP 302
            +P
Sbjct: 125 TSP 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,714,846
Number of extensions: 129022
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 7
Length of query: 708
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 616
Effective length of database: 1,144,436
Effective search space: 704972576
Effective search space used: 704972576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)