BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3140
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A90|A Chain A, Crystal Structure Of Mouse Sap18 Residues 1-143
 pdb|4A90|B Chain B, Crystal Structure Of Mouse Sap18 Residues 1-143
          Length = 143

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)

Query: 3   AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
           A+ES VT  +     EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTW
Sbjct: 2   AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61

Query: 56  MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
           MDATL+ELT+L++EV PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ T
Sbjct: 62  MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMT 121

Query: 116 LQQCRFIIGDYMDVKILTPKR 136
           LQ  +F IGDY+D+ I  P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142


>pdb|4A8X|C Chain C, Structure Of The Core Asap Complex
          Length = 130

 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 93/126 (73%), Gaps = 2/126 (1%)

Query: 13  EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREV 70
           EK +DREKTCPLLLRVFT N G+H+ + +F  G  P ++LQIYTWMDATL+ELT+L++EV
Sbjct: 4   EKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEV 63

Query: 71  NPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130
            PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ TLQ  +F IGDY+D+ 
Sbjct: 64  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIA 123

Query: 131 ILTPKR 136
           I  P R
Sbjct: 124 ITPPNR 129


>pdb|2HDE|A Chain A, Solution Structure Of Human Sap18
          Length = 148

 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 92/126 (73%), Gaps = 2/126 (1%)

Query: 13  EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREV 70
           EK +DREKT PLLLRVFT N G+H+ + +F  G  P ++LQIYTWMDATL+ELT+L++EV
Sbjct: 16  EKPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEV 75

Query: 71  NPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130
            PEA+++GT F F ++  +     + V++IG T+ G+KG DD+ TLQ  +F IGDY+D+ 
Sbjct: 76  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIA 135

Query: 131 ILTPKR 136
           I  P R
Sbjct: 136 ITPPNR 141


>pdb|4A6Q|A Chain A, Crystal Structure Of Mouse Sap18 Residues 6-143
          Length = 143

 Score =  135 bits (339), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 90/126 (71%), Gaps = 2/126 (1%)

Query: 13  EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTWMDATLRELTNLIREV 70
           EK +DREKTCPLLLRVFT N G+H+   +F  G  P ++LQIYTW DATL+ELT+L++EV
Sbjct: 17  EKPIDREKTCPLLLRVFTTNNGRHHRXDEFSRGNVPSSELQIYTWXDATLKELTSLVKEV 76

Query: 71  NPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130
            PEA+++GT F F ++  +     + V++IG T  G+KG DD+ TLQ  +F IGDY+D+ 
Sbjct: 77  YPEARKKGTHFNFAIVFXDLKRPGYRVKEIGSTXSGRKGTDDSXTLQSQKFQIGDYLDIA 136

Query: 131 ILTPKR 136
           I  P R
Sbjct: 137 ITPPNR 142


>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
 pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
          Length = 784

 Score = 29.6 bits (65), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 70  VNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQC 119
           V P A +RG    F  + P++  S       G+ +   +  DD + LQQC
Sbjct: 646 VPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQC 695


>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
           C2221 At 2.13a
 pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
 pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
           At 2.9a
 pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
           At 2.9a
          Length = 796

 Score = 29.6 bits (65), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 70  VNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQC 119
           V P A +RG    F  + P++  S       G+ +   +  DD + LQQC
Sbjct: 658 VPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQC 707


>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
 pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
           P3221
 pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
 pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
 pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
 pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
 pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
 pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
 pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
           P21
          Length = 776

 Score = 29.6 bits (65), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 70  VNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQC 119
           V P A +RG    F  + P++  S       G+ +   +  DD + LQQC
Sbjct: 638 VPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQC 687


>pdb|1T2P|A Chain A, Crystal Structure Of Sortase A From Staphylococcus Aureus
 pdb|1T2P|B Chain B, Crystal Structure Of Sortase A From Staphylococcus Aureus
 pdb|1T2P|C Chain C, Crystal Structure Of Sortase A From Staphylococcus Aureus
          Length = 146

 Score = 29.3 bits (64), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 21  TCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTC 80
             P  L    +F + N   D  N      +  +T++D    + TNL      +A ++G+ 
Sbjct: 32  ATPEQLNRGVSFAEENESLDDQN----ISIAGHTFIDRPNYQFTNL------KAAKKGSM 81

Query: 81  FYFTLLTPERGTSRFHVRDIGQTICG----QKGPDDNKTLQQC 119
            YF +    R      +RD+  T  G    QKG D   TL  C
Sbjct: 82  VYFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITC 124


>pdb|1IJA|A Chain A, Structure Of Sortase
 pdb|2KID|A Chain A, Solution Structure Of The S. Aureus Sortase A-Substrate
           Complex
          Length = 148

 Score = 29.3 bits (64), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 21  TCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTC 80
             P  L    +F + N   D  N      +  +T++D    + TNL      +A ++G+ 
Sbjct: 34  ATPEQLNRGVSFAEENESLDDQN----ISIAGHTFIDRPNYQFTNL------KAAKKGSM 83

Query: 81  FYFTLLTPERGTSRFHVRDIGQTICG----QKGPDDNKTLQQC 119
            YF +    R      +RD+  T  G    QKG D   TL  C
Sbjct: 84  VYFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITC 126


>pdb|1T2O|A Chain A, Crystal Structure Of Se-Srta, C184-Ala
 pdb|1T2O|B Chain B, Crystal Structure Of Se-Srta, C184-Ala
 pdb|1T2O|C Chain C, Crystal Structure Of Se-Srta, C184-Ala
          Length = 146

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 21  TCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTC 80
             P  L    +F + N   D  N      +  +T++D    + TNL      +A ++G+ 
Sbjct: 32  ATPEQLNRGVSFAEENESLDDQN----ISIAGHTFIDRPNYQFTNL------KAAKKGSX 81

Query: 81  FYFTLLTPERGTSRFHVRDIGQTICG----QKGPDDNKTL 116
            YF +    R      +RD+  T  G    QKG D   TL
Sbjct: 82  VYFKVGNETRKYKXTSIRDVKPTDVGVLDEQKGKDKQLTL 121


>pdb|1T2W|A Chain A, Crystal Structure Of Sortase A In Complex With A Lpetg
           Peptide
 pdb|1T2W|B Chain B, Crystal Structure Of Sortase A In Complex With A Lpetg
           Peptide
 pdb|1T2W|C Chain C, Crystal Structure Of Sortase A In Complex With A Lpetg
           Peptide
          Length = 145

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 21  TCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTC 80
             P  L    +F + N   D  N      +  +T++D    + TNL      +A ++G+ 
Sbjct: 31  ATPEQLNRGVSFAEENESLDDQN----ISIAGHTFIDRPNYQFTNL------KAAKKGSM 80

Query: 81  FYFTLLTPERGTSRFHVRDIGQTICG----QKGPDDNKTL 116
            YF +    R      +RD+  T  G    QKG D   TL
Sbjct: 81  VYFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTL 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,318,672
Number of Sequences: 62578
Number of extensions: 169995
Number of successful extensions: 352
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 11
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)