BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3140
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18
OS=Caenorhabditis elegans GN=C16C10.4 PE=3 SV=1
Length = 166
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 103/137 (75%), Gaps = 4/137 (2%)
Query: 6 SFVTSIDEKTVDREKTCPLLLRVFTNFGKHNNVSDFH--NG--FPPNQLQIYTWMDATLR 61
S VT +K +DREK CP+LLRVF +HN +S+++ NG PP++LQ++TWMD +LR
Sbjct: 8 SQVTVGHDKPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLR 67
Query: 62 ELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRF 121
ELT+LI+EVNP+A+++GT F F ++ +RG+ R+ +RD+G T G++G DDNKTLQQC+F
Sbjct: 68 ELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTNGERGIDDNKTLQQCKF 127
Query: 122 IIGDYMDVKILTPKRNR 138
+GD++DV I P + R
Sbjct: 128 EVGDFVDVAISLPSQGR 144
>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila
melanogaster GN=Bin1 PE=1 SV=1
Length = 150
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 102/141 (72%), Gaps = 7/141 (4%)
Query: 1 MTAIESFVTSIDEKT----VDREKTCPLLLRVFTNFGKHNNVSDFHNG-FPPNQLQIYTW 55
M +ES + ++EKT +DREKTCP+LLRVF + G+H++VS++ G P N+LQIYTW
Sbjct: 1 MANVESMI--VEEKTQVKQIDREKTCPMLLRVFCSTGRHHSVSEYMFGNVPTNELQIYTW 58
Query: 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
DATL ELT+L+R+VNP+ +++GT F F ++ P ++ F +R+IG T GQKG DDNKT
Sbjct: 59 QDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCTGQKGIDDNKT 118
Query: 116 LQQCRFIIGDYMDVKILTPKR 136
L Q +F IGD++D+ I P R
Sbjct: 119 LAQAKFSIGDFLDISITPPNR 139
>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18
PE=2 SV=1
Length = 153
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)
Query: 3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
A+ES VT + EK +DREKTCPLLLRVFT N G+H+ + +F G P ++LQIYTW
Sbjct: 2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61
Query: 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
MDATL+ELT+L++EV PEA+++GT F F ++ + + V++IG T+ G+KG DD+ T
Sbjct: 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKGTDDSMT 121
Query: 116 LQQCRFIIGDYMDVKILTPKR 136
LQ +F IGDY+D+ I P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142
>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18
PE=2 SV=1
Length = 153
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)
Query: 3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
A+ES VT + EK +DREKTCPLLLRVFT N G+H+ + +F G P ++LQIYTW
Sbjct: 2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61
Query: 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
MDATL+ELT+L++EV PEA+++GT F F ++ + + V++IG T+ G+KG DD+ T
Sbjct: 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMT 121
Query: 116 LQQCRFIIGDYMDVKILTPKR 136
LQ +F IGDY+D+ I P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142
>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18
PE=1 SV=1
Length = 153
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)
Query: 3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
A+ES VT + EK +DREKTCPLLLRVFT N G+H+ + +F G P ++LQIYTW
Sbjct: 2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61
Query: 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
MDATL+ELT+L++EV PEA+++GT F F ++ + + V++IG T+ G+KG DD+ T
Sbjct: 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMT 121
Query: 116 LQQCRFIIGDYMDVKILTPKR 136
LQ +F IGDY+D+ I P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142
>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18
PE=1 SV=1
Length = 153
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)
Query: 3 AIESFVTSID-----EKTVDREKTCPLLLRVFT-NFGKHNNVSDFHNG-FPPNQLQIYTW 55
A+ES VT + EK +DREKTCPLLLRVFT N G+H+ + +F G P ++LQIYTW
Sbjct: 2 AVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTW 61
Query: 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKT 115
MDATL+ELT+L++EV PEA+++GT F F ++ + + V++IG T+ G+KG DD+ T
Sbjct: 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMT 121
Query: 116 LQQCRFIIGDYMDVKILTPKR 136
LQ +F IGDY+D+ I P R
Sbjct: 122 LQSQKFQIGDYLDIAITPPNR 142
>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana
GN=At2g45640 PE=1 SV=1
Length = 152
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 80/120 (66%), Gaps = 5/120 (4%)
Query: 16 VDREKTCPLLLRVFTNFGKHNNVSDF--HNGFPPNQLQIYTWMDATLRELTNLIREVNPE 73
VDREKTCPLLLRVFT G H+ D+ P +++QIYTW DA+LRELT+L++EV+
Sbjct: 33 VDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVA 92
Query: 74 AQQRGTCFYFTLLTPERGTSRFHVRDIGQTIC--GQKGPDDNKTLQQCRFIIGDYMDVKI 131
A++R F + P ++VR++G+T+ +K PDD+KTL + F IGDY+DV I
Sbjct: 93 ARRRNARLSFAFVYPN-NKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151
>sp|O94405|YQFD_SCHPO Uncharacterized protein C126.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC126.13c PE=3 SV=1
Length = 145
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 22 CPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREV----NPEAQQR 77
CP L+ V+ F N+V D P+ +Q+Y W+ TL EL LI + N E +
Sbjct: 23 CPFLISVYHQFQTKNHVLDIFEDVIPS-IQVYGWLTMTLYELGVLIADQLLLNNEETRHS 81
Query: 78 GTCFYFTLLTPERGTSRFHVRDIGQTIC--GQKGPDDNKTLQQCRFIIGDYMDVKI 131
+ ++ R RD+G T+C K NK L++ GD +DV I
Sbjct: 82 EWSLQIRTIFYDKYKDRPIARDLG-TVCLHNPKLFQGNKLLKRTGIKCGDKIDVTI 136
>sp|Q46K05|FOLD_PROMT Bifunctional protein FolD OS=Prochlorococcus marinus (strain
NATL2A) GN=folD PE=3 SV=1
Length = 303
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 57 DATLRELTNLIREVNPEAQQRGTCFYFTL------------LTPERGTSRFHVRDIGQTI 104
D +L ELT +I+ +N E G L + P++ H ++G+ I
Sbjct: 72 DISLEELTEIIKSLNEEKNVDGILLQLPLPSHLDETALLRSIDPDKDADGLHPLNLGRLI 131
Query: 105 CGQKGP 110
G+KGP
Sbjct: 132 KGEKGP 137
>sp|Q9Y704|MOK14_SCHPO Cell wall alpha-1,3-glucan synthase mok14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mok14 PE=1 SV=1
Length = 1369
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 19 EKTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRG 78
EK+C L L+ ++ FP ++ W+ R + N I+ N + Q+R
Sbjct: 683 EKSCTLALKSTPEMRHKLRIAALQQRFPVDE-----WVALYDRLIRNCIKAHNKQQQRRS 737
Query: 79 TCFYFTLLTPERGT 92
+F+ +TP + T
Sbjct: 738 IKSFFSCITPNKPT 751
>sp|A2C3L3|FOLD_PROM1 Bifunctional protein FolD OS=Prochlorococcus marinus (strain
NATL1A) GN=folD PE=3 SV=1
Length = 303
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 57 DATLRELTNLIREVNPEAQQRGTCFYFTL------------LTPERGTSRFHVRDIGQTI 104
D +L ELT I+ +N E G L + P++ H ++G+ I
Sbjct: 72 DISLEELTETIKSLNEEKNVDGILLQLPLPSHLDEAALLRSIDPDKDADGLHPLNLGRLI 131
Query: 105 CGQKGP 110
G+KGP
Sbjct: 132 KGEKGP 137
>sp|Q84RQ8|ARI15_ARATH Probable E3 ubiquitin-protein ligase ARI15 OS=Arabidopsis thaliana
GN=ARI15 PE=2 SV=1
Length = 452
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 4 IESFVTSIDEKTVDREKTCPLLLRVFTNFGK--HNNVSDFHNGFPPNQLQIY 53
+ SF SI E+T +E TC LL TN G ++ + G P Q + Y
Sbjct: 361 VHSFSQSIKEETEAKELTCGKLLSETTNIGNFFYHFIKTLREGLPEVQAESY 412
>sp|Q73VS3|ISPG_MYCPA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=ispG PE=3 SV=1
Length = 388
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 86 LTPERGTSRFHVRDIG---------QTICGQKGPDDNKTLQQCRFIIGDYMD-VKILTPK 135
L P R T + VRD+G Q++C K D N TLQQ + D V++ P+
Sbjct: 15 LAPRRRTRQLMVRDVGVGSDYPISVQSMCTTKTHDVNSTLQQIAELTAAGCDIVRVACPR 74
Query: 136 RN 137
+
Sbjct: 75 QE 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,265,648
Number of Sequences: 539616
Number of extensions: 2139492
Number of successful extensions: 3776
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3759
Number of HSP's gapped (non-prelim): 13
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)