Query psy3140
Match_columns 138
No_of_seqs 109 out of 152
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:29:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6q_A Histone deacetylase com 100.0 2.2E-67 7.4E-72 401.3 14.8 127 11-137 15-143 (143)
2 2dzi_A Ubiquitin-like protein 87.3 2 6.7E-05 27.0 6.0 63 49-134 19-81 (81)
3 2wyq_A HHR23A, UV excision rep 85.1 4 0.00014 25.8 6.8 65 49-135 17-83 (85)
4 1uel_A HHR23B, UV excision rep 84.3 5.1 0.00018 26.5 7.2 66 49-136 12-79 (95)
5 3n3k_B Ubiquitin; hydrolase, p 83.1 4.5 0.00015 25.5 6.3 62 49-135 15-78 (85)
6 2kdi_A Ubiquitin, vacuolar pro 82.7 5.6 0.00019 27.5 7.1 80 34-136 3-85 (114)
7 3m62_B UV excision repair prot 79.7 2.5 8.4E-05 28.9 4.3 64 49-135 13-76 (106)
8 2kd0_A LRR repeats and ubiquit 79.6 3.6 0.00012 26.9 5.0 66 45-133 19-84 (85)
9 3mtn_B UBA80, ubcep1, ubiquiti 78.5 7.3 0.00025 24.3 6.1 61 49-134 15-77 (85)
10 1wxv_A BAG-family molecular ch 78.1 8.3 0.00028 25.1 6.4 58 57-136 31-88 (92)
11 1sif_A Ubiquitin; hydrophobic 77.5 5.1 0.00018 26.1 5.2 68 45-135 17-84 (88)
12 2faz_A Ubiquitin-like containi 77.3 2.1 7E-05 26.9 3.1 61 51-134 17-78 (78)
13 1wia_A Hypothetical ubiquitin- 77.2 2.2 7.6E-05 28.1 3.4 63 50-137 20-82 (95)
14 4fbj_B NEDD8; effector-HOST ta 76.2 3.9 0.00013 26.7 4.4 62 49-135 12-75 (88)
15 2d07_B Ubiquitin-like protein 75.4 14 0.00047 24.8 7.1 62 48-132 28-89 (93)
16 1v2y_A 3300001G02RIK protein; 74.7 2.8 9.5E-05 29.4 3.4 73 48-137 18-100 (105)
17 3k9o_B Ubiquitin, UBB+1; E2-25 72.2 14 0.00047 23.9 6.3 62 49-135 13-76 (96)
18 1yx5_B Ubiquitin; proteasome, 71.0 19 0.00065 23.5 6.9 63 50-135 13-75 (98)
19 3dbh_I NEDD8; cell cycle, acti 70.9 7.5 0.00026 24.6 4.7 61 49-134 24-86 (88)
20 3onh_A Ubiquitin-activating en 70.9 4.5 0.00015 29.8 3.9 56 55-130 17-77 (127)
21 4a20_A Ubiquitin-like protein 70.0 23 0.00078 24.0 7.5 61 52-134 36-97 (98)
22 1j8c_A Ubiquitin-like protein 69.4 18 0.00062 25.4 6.8 77 23-135 30-106 (125)
23 1wz0_A Ubiquitin-like protein 69.3 23 0.00078 24.4 7.2 63 48-133 35-97 (104)
24 2kan_A Uncharacterized protein 68.8 19 0.00065 23.8 6.5 66 49-136 26-91 (94)
25 2klc_A Ubiquilin-1; ubiquitin- 68.2 4.5 0.00015 27.3 3.2 65 49-136 36-100 (101)
26 3a9j_A Ubiquitin; protein comp 68.2 5.1 0.00017 24.4 3.3 63 50-135 13-75 (76)
27 4hcn_B Polyubiquitin, ubiquiti 67.8 16 0.00055 24.1 6.0 61 49-134 34-96 (98)
28 1wx7_A Ubiquilin 3; ubiquitin- 67.6 24 0.00084 23.5 7.7 62 51-135 30-91 (106)
29 1ttn_A DC-UBP, dendritic cell- 65.5 20 0.00068 24.1 6.1 65 49-136 35-99 (106)
30 2bwf_A Ubiquitin-like protein 64.8 5.6 0.00019 24.5 3.0 62 50-134 16-77 (77)
31 1wx8_A Riken cDNA 4931431F19; 64.0 27 0.00091 22.6 7.0 77 23-135 15-91 (96)
32 2pjh_A Protein NPL4, nuclear p 59.5 17 0.00058 23.7 4.7 76 22-130 3-78 (80)
33 1wjn_A Tubulin-folding protein 58.9 7.1 0.00024 25.9 2.8 66 56-136 31-96 (97)
34 3qx1_A FAS-associated factor 1 58.7 15 0.00051 23.9 4.3 56 56-130 26-81 (84)
35 3phx_B Ubiquitin-like protein 58.6 7.4 0.00025 24.3 2.7 60 49-133 16-77 (79)
36 1ndd_A NEDD8, protein (ubiquit 57.8 9 0.00031 23.2 3.0 62 50-134 13-74 (76)
37 3m63_B Ubiquitin domain-contai 57.8 5.3 0.00018 27.0 2.0 60 50-134 40-101 (101)
38 2uyz_B Small ubiquitin-related 57.7 4.9 0.00017 25.2 1.7 63 49-134 15-77 (79)
39 2kk8_A Uncharacterized protein 57.0 4 0.00014 26.7 1.3 65 45-133 18-84 (84)
40 3b1l_X E3 ubiquitin-protein li 60.9 2.4 8.1E-05 26.4 0.0 25 111-135 51-75 (76)
41 1x1m_A Ubiquitin-like protein 53.5 24 0.00081 23.8 4.8 60 56-136 42-103 (107)
42 3rt3_B Ubiquitin-like protein 52.9 9.7 0.00033 27.0 2.9 64 49-136 14-81 (159)
43 2dzj_A Synaptic glycoprotein S 52.3 30 0.001 22.7 5.1 57 53-129 29-85 (88)
44 1v5o_A 1700011N24RIK protein; 52.2 5.4 0.00019 26.8 1.3 61 50-134 24-86 (102)
45 2ojr_A Ubiquitin; lanthide-bin 50.7 54 0.0018 22.0 9.5 63 49-134 47-109 (111)
46 3v6c_B Ubiquitin; structural g 50.5 10 0.00035 24.6 2.4 59 49-132 29-89 (91)
47 2io1_B Small ubiquitin-related 50.2 12 0.0004 25.2 2.8 62 48-132 18-79 (94)
48 4dwf_A HLA-B-associated transc 50.1 13 0.00043 23.9 2.8 62 49-136 17-80 (90)
49 3b08_A Polyubiquitin-C, ubiqui 50.1 12 0.0004 25.9 2.8 62 50-136 13-76 (152)
50 1wm3_A Ubiquitin-like protein 49.6 10 0.00036 23.9 2.3 61 48-131 12-72 (72)
51 3u5e_m 60S ribosomal protein L 49.4 3.8 0.00013 28.8 0.2 61 50-135 13-75 (128)
52 1wju_A NEDD8 ultimate buster-1 47.6 26 0.00087 24.3 4.3 61 49-132 31-91 (100)
53 1yqb_A Ubiquilin 3; structural 46.8 10 0.00035 25.4 2.1 63 51-136 35-97 (100)
54 3rt3_B Ubiquitin-like protein 45.9 15 0.00052 25.9 3.0 63 50-137 94-158 (159)
55 2io0_B Small ubiquitin-related 45.9 14 0.00048 24.8 2.6 63 48-133 16-78 (91)
56 1wgh_A Ubiquitin-like 3, HCG-1 45.0 20 0.00067 25.4 3.4 66 49-132 28-96 (116)
57 1wy8_A NP95-like ring finger p 44.8 14 0.00047 23.6 2.4 63 50-135 21-84 (89)
58 2hj8_A Interferon-induced 17 k 44.7 6.9 0.00024 25.4 0.9 63 50-135 17-79 (88)
59 3goe_A DNA repair protein RAD6 43.6 16 0.00056 25.0 2.6 61 49-131 21-81 (82)
60 1wyw_B Ubiquitin-like protein 43.3 10 0.00034 25.2 1.5 79 20-133 16-94 (97)
61 1wh3_A 59 kDa 2'-5'-oligoadeny 43.3 13 0.00045 23.5 2.1 64 49-135 19-82 (87)
62 2k8h_A Small ubiquitin protein 42.1 53 0.0018 22.8 5.3 63 48-133 37-99 (110)
63 3q3f_A Ribonuclease/ubiquitin 41.7 36 0.0012 25.9 4.6 63 48-135 116-180 (189)
64 1wj0_A Squamosa promoter-bindi 40.1 11 0.00039 24.2 1.3 14 29-42 46-60 (60)
65 2eke_C Ubiquitin-like protein 40.1 19 0.00065 25.1 2.6 62 48-132 41-102 (106)
66 1wgk_A Riken cDNA 2900073H19 p 39.1 13 0.00045 26.1 1.7 18 58-75 43-60 (114)
67 2gow_A HCG-1 protein, ubiquiti 38.7 22 0.00074 25.4 2.8 65 50-132 30-97 (125)
68 2bps_A YUKD protein; ubiquitin 38.3 43 0.0015 22.4 4.1 56 56-129 25-80 (81)
69 2l7r_A Ubiquitin-like protein 37.8 16 0.00054 24.0 1.8 60 50-134 30-91 (93)
70 3b08_A Polyubiquitin-C, ubiqui 37.8 26 0.0009 24.0 3.1 60 51-135 90-151 (152)
71 1v6e_A Cytoskeleton-associated 36.3 23 0.0008 23.2 2.5 64 56-135 27-90 (95)
72 1we6_A Splicing factor, putati 36.1 29 0.00098 23.4 3.0 63 50-135 43-106 (111)
73 3a4r_A Nfatc2-interacting prot 36.1 13 0.00044 24.1 1.1 58 49-129 20-77 (79)
74 3u30_A Ubiquitin, linear DI-ub 35.6 23 0.00077 25.5 2.5 62 50-136 33-96 (172)
75 2l76_A Nfatc2-interacting prot 35.5 15 0.00051 25.6 1.5 22 112-133 72-93 (95)
76 2kzr_A Ubiquitin thioesterase 34.1 26 0.00088 22.5 2.4 60 56-133 19-78 (86)
77 4b6w_A Tubulin-specific chaper 33.9 36 0.0012 22.3 3.1 64 56-135 23-86 (86)
78 3l0w_B Monoubiquitinated proli 30.0 40 0.0014 24.7 3.1 64 49-135 12-75 (169)
79 3ivf_A Talin-1; FERM domain, c 29.6 1.3E+02 0.0045 24.1 6.5 58 56-129 21-81 (371)
80 1wf9_A NPL4 family protein; be 28.6 25 0.00086 23.7 1.7 77 24-132 8-94 (107)
81 2lxa_A Ubiquitin-like protein 28.4 24 0.00084 23.3 1.5 65 50-136 14-81 (87)
82 1se9_A Ubiquitin family; ubiqu 27.5 41 0.0014 24.2 2.8 52 56-126 36-90 (126)
83 1vq8_Q 50S ribosomal protein L 27.5 23 0.00079 24.7 1.3 15 120-134 33-47 (96)
84 1wgd_A Homocysteine-responsive 27.0 1.3E+02 0.0043 19.2 5.8 62 50-133 22-86 (93)
85 3kyd_D Small ubiquitin-related 24.7 52 0.0018 23.3 2.8 62 48-132 51-112 (115)
86 1ul5_A SPL7, squamosa promoter 24.3 18 0.0006 25.0 0.2 17 27-43 44-61 (88)
87 1gcq_C VAV proto-oncogene; SH3 24.2 40 0.0014 20.4 1.9 18 115-132 23-40 (70)
88 1ul4_A SPL4, squamosa promoter 24.0 22 0.00075 24.8 0.7 16 28-43 50-66 (94)
89 1we7_A SF3A1 protein; structur 23.6 42 0.0014 22.7 2.1 64 49-135 47-110 (115)
90 1t0y_A Tubulin folding cofacto 22.7 67 0.0023 22.1 3.0 66 54-135 24-89 (122)
91 3vdz_A Ubiquitin-40S ribosomal 22.3 1.8E+02 0.0062 19.4 9.4 61 49-134 47-109 (111)
92 2kjr_A CG11242; UBL, ubiquitin 22.0 32 0.0011 23.0 1.2 59 54-129 34-92 (95)
93 2eki_A DRG 1, developmentally- 21.9 2E+02 0.0068 19.7 6.7 47 25-88 11-60 (93)
94 2fpe_A C-JUN-amino-terminal ki 21.9 48 0.0016 19.6 1.9 14 117-130 18-31 (62)
95 3plu_A Ubiquitin-like modifier 21.8 53 0.0018 22.5 2.3 59 49-130 33-91 (93)
96 4e6r_A Cytoplasmic protein NCK 21.5 50 0.0017 19.0 1.9 15 117-131 16-30 (58)
97 1jo8_A ABP1P, actin binding pr 21.4 50 0.0017 19.2 1.9 15 117-131 15-29 (58)
98 1k1z_A VAV; SH3, proto-oncogen 21.4 47 0.0016 20.6 1.8 16 116-131 32-47 (78)
99 2kj6_A Tubulin folding cofacto 21.2 38 0.0013 22.8 1.5 69 50-134 29-97 (97)
100 2a28_A BZZ1 protein; SH3 domai 21.2 51 0.0018 18.9 1.9 16 117-132 15-30 (54)
101 3j21_R 50S ribosomal protein L 21.0 37 0.0012 23.7 1.3 14 120-133 34-47 (97)
102 1sem_A SEM-5; SRC-homology 3 ( 20.6 53 0.0018 19.0 1.9 15 117-131 17-31 (58)
103 4dbg_A Ranbp-type and C3HC4-ty 20.5 69 0.0024 22.2 2.7 75 23-132 22-99 (105)
104 1k4u_S Phagocyte NADPH oxidase 20.5 53 0.0018 19.4 1.9 16 117-132 20-35 (62)
105 2jte_A CD2-associated protein; 20.4 53 0.0018 19.4 1.9 15 117-131 21-35 (64)
106 2bz8_A SH3-domain kinase bindi 20.4 54 0.0018 19.1 1.9 15 117-131 16-30 (58)
107 2g6f_X RHO guanine nucleotide 20.2 55 0.0019 19.1 1.9 15 117-131 19-33 (59)
108 1tg0_A BBC1 protein, myosin ta 20.1 54 0.0018 19.8 1.9 14 117-130 22-35 (68)
No 1
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=100.00 E-value=2.2e-67 Score=401.28 Aligned_cols=127 Identities=51% Similarity=0.927 Sum_probs=124.1
Q ss_pred cCCCCCCccCCCccEEEEeecC-CCCCCCCCCCC-CCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEec
Q psy3140 11 IDEKTVDREKTCPLLLRVFTNF-GKHNNVSDFHN-GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTP 88 (138)
Q Consensus 11 ~~~~~idRektcPfLLRvF~~~-g~~h~~~eF~~-~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~Vyp 88 (138)
++.++|||||||||||||||++ |+||+++||+. ++|+||||||||||||||||++|||+++|++|++||+|+|++|||
T Consensus 15 ~~~~~idRektcPfLLRvF~~~ng~hh~~~eF~~~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~Vyp 94 (143)
T 4a6q_A 15 EPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFM 94 (143)
T ss_dssp CCCCCCCGGGSCCEEEEEEEESSSSCCCGGGGCTTCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEE
T ss_pred CCCCCccccCCCCeEEEEEecCCCCCCCHHHccCCCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcc
Confidence 5788999999999999999999 79999999998 899999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCCCC
Q psy3140 89 ERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKRN 137 (138)
Q Consensus 89 D~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~~ 137 (138)
|+++++|.+||||+|++|+++.||+|||++++|+|||||||||+||++|
T Consensus 95 D~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~~ 143 (143)
T 4a6q_A 95 DLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRA 143 (143)
T ss_dssp CSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEEEEECGGGC
T ss_pred cCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999999999986
No 2
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.28 E-value=2 Score=26.96 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=42.7
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.+-...++|+.||-..|.+..- .+...- +++|. |.. -+|++||++++...|+-|.
T Consensus 19 ~~~~~v~~~~tV~~LK~~i~~~~~-i~~~~q----rL~~~------------gk~------L~d~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 19 ECSLQVPEDELVSTLKQLVSEKLN-VPVRQQ----RLLFK------------GKA------LADGKRLSDYSIGPNSKLN 75 (81)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHTC-CCTTTC----EEEET------------TEE------CCTTSBGGGGTCCSSBCCE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHC-cCHHHE----EEEEC------------CeE------CCCCCcHHHcCCCCCCEEE
Confidence 345566789999999999987542 111112 23331 111 1467999999999999999
Q ss_pred EEeeCC
Q psy3140 129 VKILTP 134 (138)
Q Consensus 129 vaI~pP 134 (138)
+.+.||
T Consensus 76 l~~~~~ 81 (81)
T 2dzi_A 76 LVVKPL 81 (81)
T ss_dssp EECCCC
T ss_pred EEEeCC
Confidence 988775
No 3
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=85.15 E-value=4 Score=25.83 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=42.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.+-...++|+.||-..|.+.. ...+... .+++|. | .. -+|++||++++...|+.
T Consensus 17 ~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~----qrLi~~----G--------k~------L~D~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 17 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG----QKLIYA----G--------KI------LSDDVPIRDYRIDEKNF 74 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG----EEEEET----T--------EE------CCTTSBGGGGCCCTTSE
T ss_pred EEEEEECCCCCHHHHHHHHHhhccccCCCHHH----eEEEEC----C--------EE------CcCCCCHHHcCCCCCCE
Confidence 34555668999999999998862 1111111 234441 1 11 24679999999999999
Q ss_pred EEEEeeCCC
Q psy3140 127 MDVKILTPK 135 (138)
Q Consensus 127 idvaI~pP~ 135 (138)
|.+.+.+|.
T Consensus 75 i~l~~~~~~ 83 (85)
T 2wyq_A 75 VVVMVTKTK 83 (85)
T ss_dssp EEEEEC---
T ss_pred EEEEEcCCC
Confidence 999998774
No 4
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.26 E-value=5.1 Score=26.46 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=44.7
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCc--cccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNP--EAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p--~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-...+.|+.||-..|.+... ..+... .+++|. | .. -+|++||++++...|+.
T Consensus 12 ~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~----qrLi~~----G--------k~------L~D~~tL~~ygI~~g~~ 69 (95)
T 1uel_A 12 TFKIDIDPEETVKALKEKIESEKGKDAFPVAG----QKLIYA----G--------KI------LNDDTALKEYKIDEKNF 69 (95)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHHCTTTCCTTT----EEEEET----T--------EE------CCTTSBGGGGTCCSSSE
T ss_pred EEEEEECCCCHHHHHHHHHHhhcccCCCChhh----EEEEEC----C--------EE------CCCcCcHHHCCCCCCCE
Confidence 345556788999999999988631 111112 234441 1 11 24679999999999999
Q ss_pred EEEEeeCCCC
Q psy3140 127 MDVKILTPKR 136 (138)
Q Consensus 127 idvaI~pP~~ 136 (138)
|.+.+..|..
T Consensus 70 i~l~~~~~~~ 79 (95)
T 1uel_A 70 VVVMVTKPKA 79 (95)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEeCCCC
Confidence 9999987754
No 5
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=83.06 E-value=4.5 Score=25.47 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=43.4
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-.-.++|+.||-..|.+.. |..+ .+++|.. +. -+|++||+++++..|+-
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~ip~~~-------qrL~~~g--------~~----------L~d~~tL~~~~i~~~~~ 69 (85)
T 3n3k_B 15 TIILEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFAG--------KQ----------LEDGRTLSDYNIHNHSA 69 (85)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGG-------EEEEETB--------EE----------CCTTCBTTTTTCCTTCE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHH-------EEEEECC--------eE----------CCCCCCHHHCCCCCCCE
Confidence 35555668899999999998753 2221 3566522 11 24678999999999999
Q ss_pred EEEEeeCCC
Q psy3140 127 MDVKILTPK 135 (138)
Q Consensus 127 idvaI~pP~ 135 (138)
|.+.+....
T Consensus 70 i~l~~rl~G 78 (85)
T 3n3k_B 70 LYLLLKLRG 78 (85)
T ss_dssp EEEEECCC-
T ss_pred EEEEEeccC
Confidence 999887653
No 6
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=82.68 E-value=5.6 Score=27.50 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCCCCCCCC---CCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCC
Q psy3140 34 KHNNVSDFHN---GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGP 110 (138)
Q Consensus 34 ~~h~~~eF~~---~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~ 110 (138)
.||.-.||.. .+....+.|-...++|+.+|-..|.+..- .+... .+++|. |.. -
T Consensus 3 ~~~~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~------------Gk~------L 59 (114)
T 2kdi_A 3 HHHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQ----QRLIWA------------GKQ------L 59 (114)
T ss_dssp CSCCCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGG----EEEEET------------TEE------C
T ss_pred ccccCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC-cChHH----EEEEEC------------CEE------C
Confidence 3566677775 44445677777899999999999987531 11111 133431 111 2
Q ss_pred CcccccccCCCCCCcEEEEEeeCCCC
Q psy3140 111 DDNKTLQQCRFIIGDYMDVKILTPKR 136 (138)
Q Consensus 111 dd~kTL~~~rF~iGDyidvaI~pP~~ 136 (138)
+|++||++++...|+.|.+.+.++..
T Consensus 60 ~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 60 EDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47899999999999999999887654
No 7
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.69 E-value=2.5 Score=28.89 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=42.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|-...+.|+.+|-..|.+...- +...- +++| +| .. -+|++||.++++..|+.|.
T Consensus 13 ~~~l~v~~~~TV~~LK~~I~~~~gi-p~~~Q----rLi~----~G--------k~------L~D~~tL~~~~i~~g~~i~ 69 (106)
T 3m62_B 13 KVPLDLEPSNTILETKTKLAQSISC-EESQI----KLIY----SG--------KV------LQDSKTVSECGLKDGDQVV 69 (106)
T ss_dssp EEEECCCTTSBHHHHHHHHHHTTTS-CGGGC----EEEE----TT--------EE------CCTTSBTTTTTCCTTCEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCC-ChhhE----EEEE----CC--------EE------CCCcCCHHHcCCCCCCEEE
Confidence 4556667899999999999886521 11111 3343 11 11 1468999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+..|.
T Consensus 70 lv~~~~~ 76 (106)
T 3m62_B 70 FMVSQKK 76 (106)
T ss_dssp EECCC--
T ss_pred EEEcCCC
Confidence 9998664
No 8
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=79.57 E-value=3.6 Score=26.86 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=43.1
Q ss_pred CCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCC
Q psy3140 45 FPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIG 124 (138)
Q Consensus 45 ~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iG 124 (138)
+....+.|-...++|+.||-..|.+..- .+...-+ ++| + |.. -+|++||++++...|
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qr----L~~----~--------Gk~------L~D~~tL~~~gi~~g 75 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITN-VLPRGQK----LIF----K--------GKV------LVETSTLKQSDVGSG 75 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHC-CCTTTCE----EEE----T--------TEE------CCTTCBTTTTTCCTT
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHC-cChHHEE----EEE----C--------CeE------CCCcCCHHHCCCCCC
Confidence 3334566777789999999999987431 1111122 233 1 111 247799999999999
Q ss_pred cEEEEEeeC
Q psy3140 125 DYMDVKILT 133 (138)
Q Consensus 125 DyidvaI~p 133 (138)
+-|.+.+.|
T Consensus 76 ~~l~l~~s~ 84 (85)
T 2kd0_A 76 AKLMLMASQ 84 (85)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEEeC
Confidence 999887654
No 9
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=78.50 E-value=7.3 Score=24.35 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=42.8
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-.-.++|+.||-..|.+.. |..+ .+++|.. + . -+|++||++++...|+-
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-------qrL~~~g----~--------~------L~d~~tL~~~~i~~~~~ 69 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFAG----K--------Q------LEDGRTLSDYNIQKWST 69 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGG-------CEEEETT----E--------E------CCTTSBTGGGTCCTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHH-------EEEEECC----E--------E------CCCCCCHHHcCCCCCCE
Confidence 45566678999999999998754 2222 2445522 1 1 24679999999999999
Q ss_pred EEEEeeCC
Q psy3140 127 MDVKILTP 134 (138)
Q Consensus 127 idvaI~pP 134 (138)
|.+.+...
T Consensus 70 l~l~~r~~ 77 (85)
T 3mtn_B 70 LFLLLRLR 77 (85)
T ss_dssp EEEECCCC
T ss_pred EEEEEECc
Confidence 99987654
No 10
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.14 E-value=8.3 Score=25.06 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCCC
Q psy3140 57 DATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPKR 136 (138)
Q Consensus 57 d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~~ 136 (138)
++|+.+|-..|.+..- .+...-| ++|. | +.-.|+++||.+++...|+.|.+...++..
T Consensus 31 ~~TV~~LK~~i~~~~g-ip~~~qr----L~~~------------G-----k~L~D~~~~L~~~~i~~g~~i~l~~~~~~~ 88 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIG-VPQSFQK----LIFK------------G-----KSLKEMETPLSALGIQDGCRVMLIGKKNSG 88 (92)
T ss_dssp SCBHHHHHHHHHHHTC-CCTTTCE----EEET------------T-----EEECCSSSBHHHHTCCSSEEEEEESCCSCS
T ss_pred cCcHHHHHHHHHHHHC-cCHHHEE----EEEC------------C-----eecCCCcccHHHCCCCCCCEEEEEecCCCC
Confidence 4999999999987541 1111122 2331 1 112456899999999999999998877654
No 11
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=77.48 E-value=5.1 Score=26.09 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=43.3
Q ss_pred CCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCC
Q psy3140 45 FPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIG 124 (138)
Q Consensus 45 ~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iG 124 (138)
+....+.+-...++|+.||-..|.+..- .+... .+++|. | .. -+|++||++++...|
T Consensus 17 ~~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrL~~~----G--------k~------L~D~~tL~~~gi~~g 73 (88)
T 1sif_A 17 LTGKTFTVEMEPSDTIENLKAKIQDKEG-IPPDQ----QRLIFA----G--------KQ------LEDGRTLSDYNIQKE 73 (88)
T ss_dssp TTSCEEEEECCTTSBHHHHHHHHHHHHC-CCGGG----CEEEET----T--------EE------CCTTSBSGGGTCCTT
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHC-cChhh----EEEEEC----C--------EE------CCCCCcHHHcCCCCC
Confidence 3334577777899999999999987531 11111 234441 1 11 146799999999999
Q ss_pred cEEEEEeeCCC
Q psy3140 125 DYMDVKILTPK 135 (138)
Q Consensus 125 DyidvaI~pP~ 135 (138)
+-|.+.+.++.
T Consensus 74 ~~i~l~~r~~G 84 (88)
T 1sif_A 74 STLHLVLRLRG 84 (88)
T ss_dssp CEEEEEC----
T ss_pred CEEEEEEeCCC
Confidence 99999877654
No 12
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=77.35 E-value=2.1 Score=26.89 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred eee-ecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 51 QIY-TWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 51 qIY-tW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
.+- ...+.|+.+|-..|.+..- .+... .+++|. | .. -+|++||++++...|+-|.+
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~g-ip~~~----qrL~~~----g--------~~------L~d~~tL~~~~i~~g~~i~l 73 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFH-VEPGL----QRLFYR----G--------KQ------MEDGHTLFDYEVRLNDTIQL 73 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHC-CCGGG----EEEEET----T--------EE------CCTTCBTTTTTCCTTCEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHC-cChhh----EEEEEC----C--------EE------CCCCCCHHHcCCCCCCEEEE
Confidence 444 5688999999999987531 11111 234441 1 11 24779999999999999999
Q ss_pred EeeCC
Q psy3140 130 KILTP 134 (138)
Q Consensus 130 aI~pP 134 (138)
.+.+|
T Consensus 74 ~~r~~ 78 (78)
T 2faz_A 74 LVRQS 78 (78)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 98876
No 13
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.22 E-value=2.2 Score=28.11 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=42.4
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+-.-.+.|+.+|-..|.+..| .. .+++| .|+.-.|+++||++++...|+.|.|
T Consensus 20 ~~~~v~~~~TV~~LK~~i~~~~~----~~----qrLi~-----------------~Gk~L~D~~~tL~~y~i~~g~~i~l 74 (95)
T 1wia_A 20 ELAVARPEDTVGTLKSKYFPGQE----SQ----MKLIY-----------------QGRLLQDPARTLSSLNITNNCVIHC 74 (95)
T ss_dssp EEEEECSSSBHHHHHHHHSSSTT----TT----CEEEE-----------------TTEECCCSSCBTTTTTCCTTEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHhhCc----Cc----EEEEE-----------------CCEEccCCcCCHHHcCCCCCCEEEE
Confidence 34445578999999998876541 11 12333 1222234459999999999999999
Q ss_pred EeeCCCCC
Q psy3140 130 KILTPKRN 137 (138)
Q Consensus 130 aI~pP~~~ 137 (138)
.+.+|...
T Consensus 75 ~~~~~~~~ 82 (95)
T 1wia_A 75 HRSPPGAA 82 (95)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99877643
No 14
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=76.24 E-value=3.9 Score=26.69 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=43.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-...++|+.+|-..|.+.. |..+ .+++| +| + . -+|++||+++++..|+.
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------qrLi~----~G----k----~------L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQ-------QRLIY----SG----K----Q------MNDEKTAADYKILGGSV 66 (88)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGG-------CEEEE----TT----E----E------CCTTSBTTTTTCCTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhH-------EEEEE----CC----e----E------CCCCCcHHHcCCCCCCE
Confidence 45666778999999999998753 2221 13444 11 1 1 24789999999999999
Q ss_pred EEEEeeCCC
Q psy3140 127 MDVKILTPK 135 (138)
Q Consensus 127 idvaI~pP~ 135 (138)
|.+.+....
T Consensus 67 l~l~~rl~G 75 (88)
T 4fbj_B 67 LHLVLALRG 75 (88)
T ss_dssp EEEECBCC-
T ss_pred EEEEEECCC
Confidence 999887654
No 15
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=75.37 E-value=14 Score=24.75 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=44.0
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+++++-.=++.+|+.|-....+..--... +++++| | | .- -.++.|++++...-||-|
T Consensus 28 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~~-----~~rf~f-d---G--------~~------l~~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 28 SVVQFKIKRHTPLSKLMKAYCERQGLSMR-----QIRFRF-D---G--------QP------INETDTPAQLEMEDEDTI 84 (93)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHTCCGG-----GEEEEE-T---T--------EE------CCTTCCTTTTTCCTTEEE
T ss_pred CEEEEEEccCCHHHHHHHHHHHHhCCCcc-----ceEEEE-C---C--------EE------cCCCCCHHHcCCCCCCEE
Confidence 36777788999999998888764432221 456666 2 1 11 136799999999999999
Q ss_pred EEEee
Q psy3140 128 DVKIL 132 (138)
Q Consensus 128 dvaI~ 132 (138)
+|.+.
T Consensus 85 dv~~~ 89 (93)
T 2d07_B 85 DVFQQ 89 (93)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 99875
No 16
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.66 E-value=2.8 Score=29.37 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=49.1
Q ss_pred CceeeeecCCCCHHHHHHHHHhhC--ccccCCCcE-E-------EEEEEecCCCCCCeeeeecceeeeCCCCCCcccccc
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVN--PEAQQRGTC-F-------YFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQ 117 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr-~-------~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~ 117 (138)
.++.|-.=.++|+.||=..|.+.. |..+..|.+ . .|+++|. |+.-.||.+||.
T Consensus 18 ~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~-----------------Gk~L~dD~~tL~ 80 (105)
T 1v2y_A 18 EVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA-----------------GEKLTEDRKKLR 80 (105)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS-----------------SCEECCSSSBHH
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC-----------------CcCccCCcCCHH
Confidence 345555558999999999998865 333333332 1 2455553 223346899999
Q ss_pred cCCCCCCcEEEEEeeCCCCC
Q psy3140 118 QCRFIIGDYMDVKILTPKRN 137 (138)
Q Consensus 118 ~~rF~iGDyidvaI~pP~~~ 137 (138)
+++..-||.|-+.+..-.++
T Consensus 81 dygI~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 81 DYGIRNRDEVSFIKKLGQKS 100 (105)
T ss_dssp HHTCCSSEEEEEEECSCSCC
T ss_pred HcCCCCCCEEEEEehhccCC
Confidence 99999999998877655443
No 17
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=72.20 E-value=14 Score=23.91 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=43.5
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-...++|+.+|-..|.+.. |..+ .+++|. |+ . -+|++||.+++...|+-
T Consensus 13 ~~~~~v~~~~TV~~LK~~i~~~~gip~~~-------qrL~~~----G~--------~------L~d~~tL~~~~i~~~~~ 67 (96)
T 3k9o_B 13 TITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFA----GK--------Q------LEDGRTLSDYNIQKEST 67 (96)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGG-------EEEEET----TE--------E------CCTTSBTGGGTCCTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHhhhCCChhH-------EEEEEC----CE--------E------CCCCCcHHHcCCCCCCE
Confidence 45566678999999999998754 2211 355552 11 1 24778999999999999
Q ss_pred EEEEeeCCC
Q psy3140 127 MDVKILTPK 135 (138)
Q Consensus 127 idvaI~pP~ 135 (138)
|.+.+....
T Consensus 68 i~l~~r~~g 76 (96)
T 3k9o_B 68 LHLVLRLRG 76 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEEEEcCC
Confidence 999886543
No 18
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=71.01 E-value=19 Score=23.54 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=43.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+-...++|+.||-..|.+..-- +.. ..+++|. | .. -+|++||++++...|+-|.+
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi-~~~----~qrL~~~----G--------k~------L~D~~tL~~~gi~~g~~i~l 69 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGI-PPD----QQRLIFA----G--------KQ------LEDGRTLSDYNIQKESTLHL 69 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCC-CGG----GEEEEET----T--------EE------CCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCc-Chh----hEEEEEC----C--------EE------CCCCCCHHHcCCCCCCEEEE
Confidence 455566789999999999875421 111 1334442 1 11 14689999999999999999
Q ss_pred EeeCCC
Q psy3140 130 KILTPK 135 (138)
Q Consensus 130 aI~pP~ 135 (138)
.+.++.
T Consensus 70 ~~~~~g 75 (98)
T 1yx5_B 70 VLRLRG 75 (98)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 887764
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=70.94 E-value=7.5 Score=24.59 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=42.2
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-.-.+.|+.+|-..|.+.. |..+ .+++|- | + . -+|++||+++++..|+.
T Consensus 24 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~-------qrL~~~----G----~---------~-L~d~~tL~~~~i~~~~~ 78 (88)
T 3dbh_I 24 EIEIDIEPTDKVERIKERVEEKEGIPPQQ-------QRLIYS----G----K---------Q-MNDEKTAADYKILGGSV 78 (88)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGG-------CCEEET----T----E---------E-CCTTSBGGGGTCCTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcCHHH-------EEEEEC----C----e---------E-CCCCCcHHHcCCCCCCE
Confidence 45666678999999999998753 2221 134441 1 1 1 24789999999999999
Q ss_pred EEEEeeCC
Q psy3140 127 MDVKILTP 134 (138)
Q Consensus 127 idvaI~pP 134 (138)
|.+.+...
T Consensus 79 i~l~~rl~ 86 (88)
T 3dbh_I 79 LHLVLRLR 86 (88)
T ss_dssp EEECCCCC
T ss_pred EEEEEeCC
Confidence 99877543
No 20
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=70.90 E-value=4.5 Score=29.81 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=33.7
Q ss_pred cCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeee---cceeeeCCCCCCc--ccccccCCCCCCcEEEE
Q psy3140 55 WMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRD---IGQTICGQKGPDD--NKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 55 W~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rd---lGsv~~g~~~~dd--~kTL~~~rF~iGDyidv 129 (138)
|..+||.+|...|++.+.-. + -+.+.+ .|.+ -....|| .|||.++++..|-+|.|
T Consensus 17 l~~~TL~dLV~~l~~~~gy~--------------~----eiSV~~~~~~rLL--yD~DfDDnl~k~L~dLgv~~gsfLtv 76 (127)
T 3onh_A 17 LNKMKLSDFVVLIREKYSYP--------------Q----DISLLDASNQRLL--FDYDFEDLNDRTLSEINLGNGSIILF 76 (127)
T ss_dssp HHHCBHHHHHHHHHHHHTCC--------------S----SEEEEETTTTEEE--EETTBCTTTTSBTTTTTCCTTCEEEE
T ss_pred ccccCHHHHHHHHHHhcCCC--------------C----cEEEEecCCCCeE--eCCCccccccCcHHHcCcCCCcEEEE
Confidence 56799999999998764211 0 011111 1111 1112344 69999999999998877
Q ss_pred E
Q psy3140 130 K 130 (138)
Q Consensus 130 a 130 (138)
.
T Consensus 77 ~ 77 (127)
T 3onh_A 77 S 77 (127)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=70.01 E-value=23 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=40.7
Q ss_pred eeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCC-CCCcEEEEE
Q psy3140 52 IYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRF-IIGDYMDVK 130 (138)
Q Consensus 52 IYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF-~iGDyidva 130 (138)
|-.-.+.|..+|=..|.+..+..+...- +++| + |.+ -+|++||++++. +.|+.|.+-
T Consensus 36 v~v~~~~TV~~lK~~I~~~~~gip~~~Q----rLi~----~--------Gk~------L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 36 HDFSPSDTILQIKQHLISEEKASHISEI----KLLL----K--------GKV------LHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp EEECTTCBHHHHHHHHHHTTSCSCGGGE----EEEE----T--------TEE------ECTTCBGGGSCCBTTBCEEEEE
T ss_pred EecCCCChHHHHHHHHHHHhcCCChhhE----EEEE----C--------CEE------CcCcCCHHHcCcCCCCCEEEEE
Confidence 3445899999999999444333222222 3333 1 111 147899999999 999999999
Q ss_pred eeCC
Q psy3140 131 ILTP 134 (138)
Q Consensus 131 I~pP 134 (138)
|..|
T Consensus 94 vskp 97 (98)
T 4a20_A 94 IKPN 97 (98)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 9876
No 22
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.37 E-value=18 Score=25.41 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred ccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecce
Q psy3140 23 PLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQ 102 (138)
Q Consensus 23 PfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGs 102 (138)
+=.++||++.. ...+.|-...+.|+.+|-..|.+..- .+... .+++|- |.
T Consensus 30 ~~~m~I~Vk~~-------------g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----QrLi~~------------Gk 79 (125)
T 1j8c_A 30 PKIIKVTVKTP-------------KEKEEFAVPENSSVQQFKEAISKRFK-SQTDQ----LVLIFA------------GK 79 (125)
T ss_dssp CCCEEEEEECS-------------SCEEEEEECTTCCHHHHHHHHHHHHC-SCSSS----EEEEET------------TE
T ss_pred CCcEEEEEEeC-------------CeEEEEEECCCCcHHHHHHHHHHHHC-cCcce----EEEEEC------------CE
Confidence 33477777752 12355666789999999999987531 11111 344441 22
Q ss_pred eeeCCCCCCcccccccCCCCCCcEEEEEeeCCC
Q psy3140 103 TICGQKGPDDNKTLQQCRFIIGDYMDVKILTPK 135 (138)
Q Consensus 103 v~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~ 135 (138)
+ -+|++||.+++...|+.|.+.+.++.
T Consensus 80 ~------L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 80 I------LKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp E------ESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred E------cCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 2 14679999999999999999876553
No 23
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.31 E-value=23 Score=24.40 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=42.9
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+++++-.=++.+|+.|.....+..--.+. +++++| | |.. -.++.|++++..+-||-|
T Consensus 35 ~~i~~kVk~~t~l~kL~~~y~ek~gi~~~-----~~rf~F-d----------------G~~-l~~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 35 SVVQFKIKRHTPLSKLMKAYCERQGLSMR-----QIRFRF-D----------------GQP-INETDTPAQLEMEDEDTI 91 (104)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHTCCTT-----TSCEES-S----------------SSB-CCTTSCTTTTTCCTTEEE
T ss_pred CEEEEEEcCCChHHHHHHHHHHHhCCCcc-----eEEEEE-C----------------CEE-cCCCCCHHHcCCCCCCEE
Confidence 36778888899999998888764322111 233343 2 111 136799999999999999
Q ss_pred EEEeeC
Q psy3140 128 DVKILT 133 (138)
Q Consensus 128 dvaI~p 133 (138)
+|.+..
T Consensus 92 dv~~~q 97 (104)
T 1wz0_A 92 DVFQQQ 97 (104)
T ss_dssp EECCCC
T ss_pred EEEEec
Confidence 998754
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=68.81 E-value=19 Score=23.82 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=44.3
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|-...+.|+.+|-..|.+..- .+...- +++|. |.. -.|+++||++++...|+.|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~Q----rLi~~------------Gk~-----L~D~~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVEN-TPIKRM----QLYYS------------GIE-----LADDYRNLNEYGITEFSEIV 83 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSS-SCTTTE----EEEET------------TEE-----ECCTTSBHHHHTCCTTEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHC-cCHHHE----EEEEC------------CEE-----CCCCcccHHHCCCCCCCEEE
Confidence 566667789999999999988641 111112 33331 111 12333999999999999999
Q ss_pred EEeeCCCC
Q psy3140 129 VKILTPKR 136 (138)
Q Consensus 129 vaI~pP~~ 136 (138)
+.+.++..
T Consensus 84 lv~r~~gg 91 (94)
T 2kan_A 84 VFLKSINR 91 (94)
T ss_dssp EEECCCSS
T ss_pred EEEeCCCC
Confidence 99887754
No 25
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.17 E-value=4.5 Score=27.30 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=44.3
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|-...++|+.+|-..|.+..- .+.. ..+++|. |.. -+|++||++++...|+.|.
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~----~qrLi~~------------Gk~------L~D~~tL~~~gI~~g~~I~ 92 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFK-SHTD----QLVLIFA------------GKI------LKDQDTLSQHGIHDGLTVH 92 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHT-CCGG----GEEEEET------------TEE------ECTTCCTGGGTCCTTCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC-cChh----hEEEEEC------------CEE------CCCcCcHHHcCCCCCCEEE
Confidence 345556789999999999987431 1111 1344442 111 1467999999999999999
Q ss_pred EEeeCCCC
Q psy3140 129 VKILTPKR 136 (138)
Q Consensus 129 vaI~pP~~ 136 (138)
+.+.+|.+
T Consensus 93 l~~~~~~~ 100 (101)
T 2klc_A 93 LVIKTQNR 100 (101)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99887764
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=68.17 E-value=5.1 Score=24.42 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=42.5
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+-...++|+.+|-..|.+..-- +.. ..+++|. | .. -+|++||++++...|+-|.+
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i-~~~----~q~L~~~----g--------~~------L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGI-PPD----QQRLIFA----G--------KQ------LEDGRTLSDYNIQRESTLHL 69 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCC-CGG----GEEEEET----T--------EE------CCTTCBTGGGTCCTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCc-CHH----HeEEEEC----C--------eE------CCCCCcHHHcCCCCCCEEEE
Confidence 455566789999999999875311 111 1344542 1 11 14679999999999999999
Q ss_pred EeeCCC
Q psy3140 130 KILTPK 135 (138)
Q Consensus 130 aI~pP~ 135 (138)
.+.++.
T Consensus 70 ~~~~~G 75 (76)
T 3a9j_A 70 VLRLRG 75 (76)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 887653
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=67.81 E-value=16 Score=24.10 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=42.2
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-...+.|+.||-..|.+.. |..+ .+++|. | + . -+|++||++++...|+-
T Consensus 34 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------qrLi~~----G----k----~------L~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 34 TITLEVESSDTIDNVKSKIQDKEGIPPDQ-------QRLIFA----G----K----Q------LEDGRTLSDYNIQKEST 88 (98)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGG-------CEEEET----T----E----E------CCTTCBSGGGTCCTTEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCChhH-------EEEEEC----C----E----E------CCCCCcHHHCCCCCCCE
Confidence 45566668899999999998753 2221 144441 1 1 1 25789999999999999
Q ss_pred EEEEeeCC
Q psy3140 127 MDVKILTP 134 (138)
Q Consensus 127 idvaI~pP 134 (138)
|.+.+...
T Consensus 89 i~l~~rl~ 96 (98)
T 4hcn_B 89 LHLVLRLR 96 (98)
T ss_dssp EEEECBCS
T ss_pred EEEEEecC
Confidence 99887543
No 28
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.62 E-value=24 Score=23.50 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred eeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEE
Q psy3140 51 QIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130 (138)
Q Consensus 51 qIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidva 130 (138)
.|-...+.|+.||-..|.+..- ..... .+++|. + | . -+|++||.++++.-|+.|.+.
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~----G----k----~------L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFK-AHPDQ----LVLIFA----G----K----I------LKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHT-CCTTT----EEEEET----T----E----E------CCTTSCHHHHTCCTTEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHC-cChhh----EEEEEC----C----E----E------CCCcCcHHHcCCCCCCEEEEE
Confidence 4455678999999999987531 11111 234442 1 1 1 146799999999999999998
Q ss_pred eeCCC
Q psy3140 131 ILTPK 135 (138)
Q Consensus 131 I~pP~ 135 (138)
+.++.
T Consensus 87 ~~~~~ 91 (106)
T 1wx7_A 87 IKRQH 91 (106)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 86554
No 29
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.45 E-value=20 Score=24.09 Aligned_cols=65 Identities=9% Similarity=0.155 Sum_probs=43.7
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.+-...+.|+.+|-..|.+..-- +...- +++|. |.. -+|++||+++++..|+-|.
T Consensus 35 ~~~l~v~~~~TV~~LK~~I~~~~gi-p~~~q----rLi~~------------Gk~------L~D~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 35 DLKLVVRSTDTVFHMKRRLHAAEGV-EPGSQ----RWFFS------------GRP------LTDKMKFEELKIPKDYVVQ 91 (106)
T ss_dssp EEEEEECTTSHHHHHHHHHHHTTCC-CSTTC----EEEET------------TEE------CCTTSHHHHCCCSSSCEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHCc-CcccE----EEEEC------------CEE------CCCCCcHHHcCCCCCCEEE
Confidence 3455566889999999999875321 11111 33331 111 2478999999999999999
Q ss_pred EEeeCCCC
Q psy3140 129 VKILTPKR 136 (138)
Q Consensus 129 vaI~pP~~ 136 (138)
+.+..|..
T Consensus 92 lv~~~~~~ 99 (106)
T 1ttn_A 92 VIVSQPVQ 99 (106)
T ss_dssp EECCCSSC
T ss_pred EEEeCCCC
Confidence 99887754
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=64.78 E-value=5.6 Score=24.52 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=40.3
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+-...++|+.+|-..|.+..- .+.. ..+++|. | .. -+|++||++++...|+-|.+
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~-i~~~----~qrL~~~----g--------k~------L~d~~tL~~~~i~~g~~i~l 72 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANG-IPVA----NQRLIYS----G--------KI------LKDDQTVESYHIQDGHSVHL 72 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHC-CCGG----GEEEEET----T--------EE------CCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhC-CCHH----HEEEEEC----C--------eE------cCCCCCHHHcCCCCCCEEEE
Confidence 34445678999999999987431 1111 1344442 1 11 23669999999999999998
Q ss_pred EeeCC
Q psy3140 130 KILTP 134 (138)
Q Consensus 130 aI~pP 134 (138)
...++
T Consensus 73 ~~~~~ 77 (77)
T 2bwf_A 73 VKSQP 77 (77)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 77653
No 31
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.96 E-value=27 Score=22.63 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=49.5
Q ss_pred ccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecce
Q psy3140 23 PLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQ 102 (138)
Q Consensus 23 PfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGs 102 (138)
+=-++||++.. ...+.+-...+.|+.+|-..|.+..-- +...- +++|. |.
T Consensus 15 ~~~m~i~Vk~~-------------g~~~~~~v~~~~TV~~LK~~I~~~~gi-p~~~q----rL~~~------------Gk 64 (96)
T 1wx8_A 15 SRIIRVSVKTP-------------QDCHEFFLAENSNVRRFKKQISKYLHC-NADRL----VLIFT------------GK 64 (96)
T ss_dssp SCEEEEEEECS-------------SSEEEEEEETTCCHHHHHHHHHHHTCS-CTTTB----CCEET------------TE
T ss_pred CCcEEEEEEEC-------------CeEEEEEECCCCCHHHHHHHHHHHhCC-CHHHE----EEEEC------------CE
Confidence 34577887752 124555667899999999999876421 11111 12221 11
Q ss_pred eeeCCCCCCcccccccCCCCCCcEEEEEeeCCC
Q psy3140 103 TICGQKGPDDNKTLQQCRFIIGDYMDVKILTPK 135 (138)
Q Consensus 103 v~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~ 135 (138)
. -+|++||.+++...|+-|.+.+.++.
T Consensus 65 ~------L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 65 I------LRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp E------CCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred E------CCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 1 24679999999999999988876654
No 32
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=59.47 E-value=17 Score=23.72 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=46.9
Q ss_pred CccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecc
Q psy3140 22 CPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIG 101 (138)
Q Consensus 22 cPfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlG 101 (138)
-+++||+-.+.|.+ +++ ++ .++|+.+|-..|++..+-.... |. +|-. |.. -|
T Consensus 3 ~~m~lRvrs~~G~~-Ri~-----v~---------~~~t~~~L~~~I~~~~~i~~~~-----~~-l~~~-----~~p--~~ 54 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK-RIT-----AT---------KRETAATFLKKVAKEFGFQNNG-----FS-VYIN-----RNK--TG 54 (80)
T ss_dssp CCCCCEEECSSEEE-ECC-----CC---------SSCCHHHHHHHHHHHTCCCTTT-----CC-CCCS-----CCG--GG
T ss_pred CcEEEEEECCCCCE-EEE-----cC---------CcChHHHHHHHHHHHcCCCCCc-----ce-EEec-----CCC--CC
Confidence 46899999998852 221 22 5789999999999987643211 11 1111 000 01
Q ss_pred eeeeCCCCCCcccccccCCCCCCcEEEEE
Q psy3140 102 QTICGQKGPDDNKTLQQCRFIIGDYMDVK 130 (138)
Q Consensus 102 sv~~g~~~~dd~kTL~~~rF~iGDyidva 130 (138)
... ..+++||+++++.-||.|-+.
T Consensus 55 ~l~-----~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 55 EIT-----ASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp GSS-----SCCCCTTTTTCCCTTCCEEC-
T ss_pred ccc-----CCCCCCHHHcCCCCCCEEEEe
Confidence 111 126789999999999998653
No 33
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.92 E-value=7.1 Score=25.90 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCC
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPK 135 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~ 135 (138)
.+.|+.+|-.+|....-- +... .++.|-+...+.. + ..-.+|.+||++.+...||.|-|....|.
T Consensus 31 ~~~TV~~LK~~i~~~~gi-p~~~----q~L~~~~~~~~~~-------~---~~L~~d~~~L~~y~i~~G~~I~V~d~~p~ 95 (97)
T 1wjn_A 31 DSMTVQKVKGLLSRLLKV-PVSE----LLLSYESSKMPGR-------E---IELENDLQPLQFYSVENGDCLLVRWSGPS 95 (97)
T ss_dssp TTSBHHHHHHHHHTTTTC-CTTT----CEEEEECTTSCSC-------E---EECCCSSSBSGGGTCCTTCEEEEECCSSC
T ss_pred CCCCHHHHHHHHHHHHCC-ChhH----eEEEEEcCCCCce-------e---eccCCCcccHhhcCCCCCCEEEEEecCCC
Confidence 789999999999886632 1122 2344444321110 0 01247899999999999999999987775
Q ss_pred C
Q psy3140 136 R 136 (138)
Q Consensus 136 ~ 136 (138)
.
T Consensus 96 s 96 (97)
T 1wjn_A 96 S 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=58.71 E-value=15 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEE
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidva 130 (138)
.+.||++|-+-|.... . .+..|.+..-||- |++. ..|.++||+|+++.++.-|-|-
T Consensus 26 ~~~tl~~v~~fv~~~~-~---~~~~f~L~t~fPr--------k~l~-------~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 26 ASNKLQIVFDFVASKG-F---PWDEYKLLSTFPR--------RDVT-------QLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp TTSBHHHHHHHHHHTT-C---CTTTEEEECSSSC--------CBGG-------GSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCCCHHHHHHHHHHcC-C---CCCCeEEEeCCCC--------CCCc-------CCCCCCCHHHCCCCCCCEEEEE
Confidence 6789999999998732 1 2333443333442 2222 1267899999999998887663
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.63 E-value=7.4 Score=24.31 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=41.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.+-...+.|+.+|-..|.+.. |..+ .+++|. | +. -+|++||++++...|+-
T Consensus 16 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~-------qrL~~~----G----~~----------L~d~~tL~~~~i~~~~~ 70 (79)
T 3phx_B 16 SSTYEVRLTQTVAHLKQQVSGLEGVQDDL-------FWLTFE----G----KP----------LEDQLPLGEYGLKPLST 70 (79)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGG-------EEEEET----T----EE----------CCTTSBGGGGTCCTTCE
T ss_pred EEEEEECCcChHHHHHHHHHhhcCCCHHH-------EEEEEC----C----EE----------CCCCCcHHHCCCCCCCE
Confidence 45666778999999999997643 2221 244541 1 11 14689999999999999
Q ss_pred EEEEeeC
Q psy3140 127 MDVKILT 133 (138)
Q Consensus 127 idvaI~p 133 (138)
|.+.+..
T Consensus 71 l~l~~rl 77 (79)
T 3phx_B 71 VFMNLRL 77 (79)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9988753
No 36
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=57.78 E-value=9 Score=23.24 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=41.2
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+-...++|+.||-..|.+..- .+.. ..+++|. | .. -+|++||++++...|+-|.+
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~-i~~~----~q~L~~~----g--------~~------L~d~~tL~~~~i~~g~~i~l 69 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEG-IPPQ----QQRLIYS----G--------KQ------MNDEKTAADYKILGGSVLHL 69 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHC-CCGG----GEEEEET----T--------EE------CCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHC-cChH----HEEEEEC----C--------EE------CCCCCcHHHcCCCCCCEEEE
Confidence 44555678999999999987531 1111 1344442 1 11 14679999999999999998
Q ss_pred EeeCC
Q psy3140 130 KILTP 134 (138)
Q Consensus 130 aI~pP 134 (138)
.+..+
T Consensus 70 ~~~~~ 74 (76)
T 1ndd_A 70 VLALR 74 (76)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 87654
No 37
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=57.75 E-value=5.3 Score=27.04 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=40.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.|-...+.|+.+|-..|.+.. |..+ - +++| +| + --+|++||++++++.|+-|
T Consensus 40 ~~l~v~~~~TV~~LK~~I~~~~gip~~~---Q----rLi~----~G-------------k-~L~D~~tL~~~gI~~g~tI 94 (101)
T 3m63_B 40 WEVNVAPESTVLQFKEAINKANGIPVAN---Q----RLIY----SG-------------K-ILKDDQTVESYHIQDGHSV 94 (101)
T ss_dssp CCBCCCTTSBHHHHHHHHHHHHSCCSTT---C----CEEE----TT-------------E-ECCTTSBTTTTTCCTTEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcChHH---E----EEEE----CC-------------E-ECCCcCcHHHCCCCCCCEE
Confidence 3444567899999999997754 2211 1 2333 11 1 1247899999999999999
Q ss_pred EEEeeCC
Q psy3140 128 DVKILTP 134 (138)
Q Consensus 128 dvaI~pP 134 (138)
.+.+..|
T Consensus 95 ~lv~~~P 101 (101)
T 3m63_B 95 HLVKSQP 101 (101)
T ss_dssp EECCCC-
T ss_pred EEEeCCC
Confidence 9988766
No 38
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=57.71 E-value=4.9 Score=25.19 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=42.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
++.+-.-++.|+.+|-..+.+..-- +.. ..+++|. |+. -+|++||++++...||.|+
T Consensus 15 ~~~~~v~~~~tv~~lk~~i~~~~gi-~~~----~qrL~~~-----------------G~~-L~d~~tl~~~~i~~~~~i~ 71 (79)
T 2uyz_B 15 EIHFKVKMTTHLKKLKESYCQRQGV-PMN----SLRFLFE-----------------GQR-IADNHTPKELGMEEEDVIE 71 (79)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTC-CGG----GEEEEET-----------------TEE-CCTTCCHHHHTCCTTEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCC-Ccc----cEEEEEC-----------------CEE-eCCCCCHHHcCCCCCCEEE
Confidence 4556667899999999998774311 111 1344441 111 1367999999999999999
Q ss_pred EEeeCC
Q psy3140 129 VKILTP 134 (138)
Q Consensus 129 vaI~pP 134 (138)
+.+...
T Consensus 72 l~~~~~ 77 (79)
T 2uyz_B 72 VYQEQT 77 (79)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 987543
No 39
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=57.03 E-value=4 Score=26.68 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCCCceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCC
Q psy3140 45 FPPNQLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFI 122 (138)
Q Consensus 45 ~P~~ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~ 122 (138)
+....+.|-...+.|+.+|-..|.+.. |..+ .+++|. |. .--+|++||++++..
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------QrLi~~------------Gk-----~lL~D~~tL~~y~I~ 73 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSK-------QTLIVD------------GI-----VILREDLTVEQCQIV 73 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG-------EEEEET------------TE-----ECCCSSSBHHHHTCC
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHH-------EEEEEC------------CE-----EecCCcCCHHHcCCC
Confidence 333456666778999999999998753 2211 234442 11 102578999999999
Q ss_pred CCcEEEEEeeC
Q psy3140 123 IGDYMDVKILT 133 (138)
Q Consensus 123 iGDyidvaI~p 133 (138)
.|+.|.+.+.|
T Consensus 74 ~gs~i~lv~~p 84 (84)
T 2kk8_A 74 PTSDIQLEVSS 84 (84)
T ss_dssp TTSCEEEEECC
T ss_pred CCCEEEEEEcC
Confidence 99999987765
No 40
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=60.94 E-value=2.4 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.2
Q ss_pred CcccccccCCCCCCcEEEEEeeCCC
Q psy3140 111 DDNKTLQQCRFIIGDYMDVKILTPK 135 (138)
Q Consensus 111 dd~kTL~~~rF~iGDyidvaI~pP~ 135 (138)
+|++||++++...|+-|.+.+-++.
T Consensus 51 ~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 51 PNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 4679999999999999988876654
No 41
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.47 E-value=24 Score=23.79 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=40.3
Q ss_pred CC-CCHHHHHHHHHhhCcc-ccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeC
Q psy3140 56 MD-ATLRELTNLIREVNPE-AQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILT 133 (138)
Q Consensus 56 ~d-~TLrEL~~Llk~~~p~-~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~p 133 (138)
.+ .|+.+|-..|.+..|+ .+... ..+++|. |+. -+|++||.+++...|+.|.+.+.+
T Consensus 42 ~~~~TV~~LK~~i~~~~~~gip~~~---~qrLi~~-----------------Gk~-L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 42 LGGYSISFLKQLIAGKLQESVPDPE---LIDLIYC-----------------GRK-LKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CCCCBHHHHHHHHHHHCTTTCCCSS---SEEEEET-----------------TEE-CCTTCBHHHHTCCTTCEEEEEESS
T ss_pred cccCCHHHHHHHHHHHhccCCChhh---cEEEEEC-----------------CeE-CCCCCcHHHcCCCCCCEEEEEeCC
Confidence 54 9999999999987752 22111 0122331 111 246799999999999999998876
Q ss_pred CCC
Q psy3140 134 PKR 136 (138)
Q Consensus 134 P~~ 136 (138)
|..
T Consensus 101 ~~~ 103 (107)
T 1x1m_A 101 WSG 103 (107)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 42
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=52.87 E-value=9.7 Score=27.01 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=44.3
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEE-ecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCc
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLL-TPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGD 125 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~V-ypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGD 125 (138)
.+.+-...+.|..||-..|.+.. |..+ .+++ |.. |+. -+|++||+++++..|+
T Consensus 14 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~-------QrL~~~~~----------------g~~-L~d~~tL~~y~i~~~~ 69 (159)
T 3rt3_B 14 EFQVSLSSSMSVSELKAQITQKIGVHAFQ-------QRLAVHPS----------------GVA-LQDRVPLASQGLGPGS 69 (159)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCCGGG-------EEEEEETT----------------CCB-CCTTSCGGGGTCCTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHHH-------EEEEEcCC----------------CCC-CCCCCCHHHcCCCCCC
Confidence 35556668999999999998753 3322 2344 411 111 2688999999999999
Q ss_pred EEEEEee-CCCC
Q psy3140 126 YMDVKIL-TPKR 136 (138)
Q Consensus 126 yidvaI~-pP~~ 136 (138)
.|.+.+. +|..
T Consensus 70 ~l~l~~~~~~~~ 81 (159)
T 3rt3_B 70 TVLLVVDKSDEP 81 (159)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEccCCCCc
Confidence 9999998 4654
No 43
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.28 E-value=30 Score=22.74 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=35.5
Q ss_pred eecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 53 YTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 53 YtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
-..+++|..+|=..|.+..+. |+|+..+-.|. .=|. --+|++||++.+...|+.|-+
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~------------i~~~~QrL~~~--~~Gk------~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQ------------WYPARQSLRLD--PKGK------SLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSS------------SCTTTCCEESS--TTSC------CCCTTCBTTTSSCCSEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhcC------------CChHHeEEEec--CCCc------CcCCCCCHHHcCCCCCCEEEE
Confidence 457899999999999885433 12232211110 0011 125789999999999887643
No 44
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.25 E-value=5.4 Score=26.81 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=41.4
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.|-.-.++|+.||-..|.+.. |..+. +++|.. +.| .|+.+||.+++...|+.|
T Consensus 24 ~~i~v~~~~TV~~LK~~I~~~~gip~~~q-------rL~~~g--------k~L---------~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 24 FSLQVNPDFELSNFRVLCELESGVPAEEA-------QIVYME--------QLL---------TDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCCCGGGB-------CEEETT--------EEE---------CCSSSBHHHHTCCTTEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCcChHHe-------EEEECC--------EEC---------CCCcccHHHCCCCCCCEE
Confidence 4455668899999999998754 22211 233311 111 466799999999999999
Q ss_pred EEEeeCC
Q psy3140 128 DVKILTP 134 (138)
Q Consensus 128 dvaI~pP 134 (138)
.+...+.
T Consensus 80 ~l~~~~~ 86 (102)
T 1v5o_A 80 VLLQKDN 86 (102)
T ss_dssp EECBCCC
T ss_pred EEEECCC
Confidence 9887653
No 45
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=50.65 E-value=54 Score=22.02 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=41.8
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.+-...++|+.+|-..|.+..- .+... .+++|. | .. -+|++||++++...|+-|.
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~----qrLi~~----G--------k~------L~D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 47 TITLEVEPSDTIENVKAKIQDKEG-IPPDQ----QRLIFA----G--------KQ------LEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHC-CCTTT----EEEEET----T--------EE------CCSSCBTTTTTCCTTCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHC-cCccc----EEEEEC----C--------EE------CCCCCcHHHcCCCCCCEEE
Confidence 345556688999999999987531 11111 234441 1 11 1468999999999999999
Q ss_pred EEeeCC
Q psy3140 129 VKILTP 134 (138)
Q Consensus 129 vaI~pP 134 (138)
+.+...
T Consensus 104 l~~rl~ 109 (111)
T 2ojr_A 104 LVLRLR 109 (111)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 887653
No 46
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=50.54 E-value=10 Score=24.58 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=41.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-.-.+.|+.+|-..|.+.. |..+ .+++| +|+ . -+|++||.++++..|+-
T Consensus 29 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------qrL~~----~Gk--------~------L~D~~tL~~~gi~~g~~ 83 (91)
T 3v6c_B 29 HITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIF----AGK--------Q------LEDGRTLSDYNIQKEST 83 (91)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGG-------CEEEE----TTE--------E------CCTTCBTGGGTCCTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHhhhCCChhh-------EEEEE----CCe--------E------CCCcCcHHHCCCCCCCE
Confidence 45666678999999999997743 2222 14444 111 1 24679999999999999
Q ss_pred EEEEee
Q psy3140 127 MDVKIL 132 (138)
Q Consensus 127 idvaI~ 132 (138)
|.+.+.
T Consensus 84 i~l~~r 89 (91)
T 3v6c_B 84 LHLVLR 89 (91)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 988764
No 47
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=50.17 E-value=12 Score=25.23 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=42.9
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+++.+-.=++.+|+.|.....+..--.+ . +++++| | | .- -+++.|+++++.+.||-|
T Consensus 18 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~-~----~~rf~F-d---G--------~~------l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 18 SVVQFKIKRHTPLSKLMKAYCERQGLSM-R----QIRFRF-D---G--------QP------INETDTPAQLEMEDEDTI 74 (94)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCG-G----GEEEEE-T---T--------EE------CCTTCCTTTTTCCTTCEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHhCCCc-c----cEEEEE-C---C--------EE------cCCCCCHHHcCCCCCCEE
Confidence 4677777889999998888766432211 1 345555 2 1 11 146799999999999999
Q ss_pred EEEee
Q psy3140 128 DVKIL 132 (138)
Q Consensus 128 dvaI~ 132 (138)
+|.+.
T Consensus 75 dv~~~ 79 (94)
T 2io1_B 75 DVFQQ 79 (94)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99875
No 48
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=50.15 E-value=13 Score=23.87 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=42.6
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-...+.|+.+|-..|.+.. |..+ .+++| +| |. -+|++||.+++. -|+-
T Consensus 17 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~-------qrLi~----~G----k~----------L~d~~tL~~~~i-~g~~ 70 (90)
T 4dwf_A 17 TRTFIVGAQMNVKEFKEHIAASVSIPSEK-------QRLIY----QG----RV----------LQDDKKLQEYNV-GGKV 70 (90)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGG-------EEEEE----TT----EE----------CCTTSBGGGGTC-TTEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHH-------EEEEE----CC----eE----------CCCCCCHHHcCC-CCcE
Confidence 45555668999999999998753 2211 24454 11 11 146899999999 7999
Q ss_pred EEEEeeCCCC
Q psy3140 127 MDVKILTPKR 136 (138)
Q Consensus 127 idvaI~pP~~ 136 (138)
|.+.+.+|..
T Consensus 71 i~l~~~~~~~ 80 (90)
T 4dwf_A 71 IHLVERAPPQ 80 (90)
T ss_dssp EEEEECCCC-
T ss_pred EEEEecCCCC
Confidence 9999987754
No 49
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=50.05 E-value=12 Score=25.89 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=42.9
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.+-...++|+.||-..|.+.. |..+ .+++|. |.. -+|++||++++...|+.|
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~-------q~L~~~------------g~~------L~d~~tL~~~~i~~~~~l 67 (152)
T 3b08_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFA------------GKQ------LEDGRTLSDYNIQKESTL 67 (152)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGG-------EEEEET------------TEE------CCTTSBTGGGTCCTTCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHH-------eEEEEC------------CeE------CcCcccHHHhccCCCCee
Confidence 3444567899999999998753 2211 234441 111 247899999999999999
Q ss_pred EEEeeCCCC
Q psy3140 128 DVKILTPKR 136 (138)
Q Consensus 128 dvaI~pP~~ 136 (138)
.+.+.+|..
T Consensus 68 ~l~~~~~~~ 76 (152)
T 3b08_A 68 HLVLRLRGG 76 (152)
T ss_dssp EEEECCTTC
T ss_pred EEEeecccc
Confidence 998887754
No 50
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=49.56 E-value=10 Score=23.88 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=40.3
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+++++-.=++.+|+.|-....+..--. ... ++++| | |.- -.++.|.+++..+.||-|
T Consensus 12 ~~v~~~v~~~t~l~kl~~~y~~~~gi~-~~~----~rf~f-d-----------G~~------l~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 12 SVVQFKIKRHTPLSKLMKAYCERQGLS-MRQ----IRFRF-D-----------GQP------INETDTPAQLEMEDEDTI 68 (72)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHTCC-TTT----CEEEE-T-----------TEE------CCTTCCTTTTTCCTTEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCC-cce----EEEEE-C-----------CEE------cCCCCCHHHcCCCCCCEE
Confidence 467777788999998888876642211 122 23333 2 111 146689999999999999
Q ss_pred EEEe
Q psy3140 128 DVKI 131 (138)
Q Consensus 128 dvaI 131 (138)
+|-+
T Consensus 69 dv~~ 72 (72)
T 1wm3_A 69 DVFQ 72 (72)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9853
No 51
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=49.39 E-value=3.8 Score=28.82 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=0.0
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.|-...+.|+.+|-..|.+.. |.. ..+++|.. +. -+|++||++++...|+-|
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~-------~QrLi~~G--------k~----------L~D~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 13 ITLEVESSDTIDNVKSKIQDKEGIPPD-------QQRLIFAG--------KQ----------LEDGRTLSDYNIQKESTL 67 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCcChH-------HEEEEECC--------EE----------CCCCCchhhhccCCCCEE
Confidence 3344456788888888886542 111 12333311 11 257899999999999999
Q ss_pred EEEeeCCC
Q psy3140 128 DVKILTPK 135 (138)
Q Consensus 128 dvaI~pP~ 135 (138)
.+.+.++.
T Consensus 68 ~l~~rl~G 75 (128)
T 3u5e_m 68 HLVLRLRG 75 (128)
T ss_dssp --------
T ss_pred EEEEEcCC
Confidence 98887654
No 52
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.62 E-value=26 Score=24.26 Aligned_cols=61 Identities=23% Similarity=0.122 Sum_probs=42.0
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|-...+.|..||-..|.+..-- +.. ..++||. |.+ -+|.+||.+.+.+.|..|.
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~gi-p~~----qQrLI~~------------GKi------L~D~~TL~~y~I~~gsti~ 87 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFGL-QEN----YIKIVIN------------KKQ------LQLGKTLEEQGVAHNVKAM 87 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTTC-CST----TCEEEET------------TEE------CCTTSBHHHHTCCSSEEEE
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHCc-CHH----HeEEEeC------------CeE------CCCCCcHHHcCCCCCCEEE
Confidence 5778888999999999999876521 100 1134441 222 2578999999999999995
Q ss_pred EEee
Q psy3140 129 VKIL 132 (138)
Q Consensus 129 vaI~ 132 (138)
|-++
T Consensus 88 vl~l 91 (100)
T 1wju_A 88 VLEL 91 (100)
T ss_dssp EECC
T ss_pred EEEE
Confidence 5544
No 53
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=46.83 E-value=10 Score=25.45 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=42.1
Q ss_pred eeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEE
Q psy3140 51 QIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVK 130 (138)
Q Consensus 51 qIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidva 130 (138)
.|-...++|+.||-..|.+..- .+... .+++|. | .. -+|++||++++...|+.|.+.
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~g-ip~~~----QrLi~~----G--------k~------L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFK-AHPDQ----LVLIFA----G--------KI------LKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHT-CCGGG----EEEEET----T--------EE------CCTTSBHHHHTCCTTCEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHC-cChhh----EEEEEC----C--------EE------CCCcCcHHHCCCCCCCEEEEE
Confidence 4455688999999999987431 11111 234441 1 11 246799999999999999998
Q ss_pred eeCCCC
Q psy3140 131 ILTPKR 136 (138)
Q Consensus 131 I~pP~~ 136 (138)
+.++.+
T Consensus 92 ~r~~~~ 97 (100)
T 1yqb_A 92 IKRQHR 97 (100)
T ss_dssp ECCCCS
T ss_pred EcCCCC
Confidence 876653
No 54
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=45.89 E-value=15 Score=25.93 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=40.3
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.+-...+.|..+|=..|.+.. |... .+++| +| +. -+|++||++++.+.|+-|
T Consensus 94 ~~~~v~~~~tV~~lK~~i~~~~gip~~~-------q~L~~----~G-------------~~-L~d~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 94 STYEVRLTQTVAHLKQQVSGLEGVQDDL-------FWLTF----EG-------------KP-LEDQLPLGEYGLKPLSTV 148 (159)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGG-------EEEEE----TT-------------EE-CCTTSBGGGGTCCTTCEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCHHH-------EEEEE----CC-------------ee-cCCCCCHHHcCCCCCCEE
Confidence 3344557889999988887642 2221 33444 11 11 246899999999999999
Q ss_pred EEEeeCCCCC
Q psy3140 128 DVKILTPKRN 137 (138)
Q Consensus 128 dvaI~pP~~~ 137 (138)
.+.+......
T Consensus 149 ~l~~rl~GG~ 158 (159)
T 3rt3_B 149 FMNLRLRGGG 158 (159)
T ss_dssp EEEECCC---
T ss_pred EEEEecCCCC
Confidence 9988765543
No 55
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=45.88 E-value=14 Score=24.80 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=43.9
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+++.+-.=++.+|+.|-....+..--.+ . +++++| | | .- -.++.|.+++..+-||-|
T Consensus 16 ~~v~~~vk~~t~l~kl~~~y~~~~gi~~-~----~~rf~F-d---G--------~~------l~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 16 SVVQFKIKRHTPLSKLMKAYCERQGLSM-R----QIRFRF-D---G--------QP------INETDTPAQLEMEDEDTI 72 (91)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHTTCCS-T----TEEEEE-T---T--------EE------CCTTCCTTTTTCCTTEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCc-c----cEEEEE-C---C--------EE------cCCCCCHHHcCCCCCCEE
Confidence 4678888889999999888876432211 1 244554 2 1 11 136789999999999999
Q ss_pred EEEeeC
Q psy3140 128 DVKILT 133 (138)
Q Consensus 128 dvaI~p 133 (138)
+|-+..
T Consensus 73 dv~~~q 78 (91)
T 2io0_B 73 DVFQQQ 78 (91)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998754
No 56
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.02 E-value=20 Score=25.36 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=40.6
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCC---cEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCc
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRG---TCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGD 125 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~g---tr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGD 125 (138)
.+.+-.-.+.|..+|-..|.+..|.--+-| .-=..++|| .|+- -+|++||.++++..|+
T Consensus 28 t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy-----------------~GK~-LeD~~TL~~y~I~~~~ 89 (116)
T 1wgh_A 28 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY-----------------QGRF-LHGNVTLGALKLPFGK 89 (116)
T ss_dssp EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE-----------------TTEE-ECSSCBTTTTTCCSSC
T ss_pred EEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE-----------------CCcC-CCCCCcHHHcCCCCCC
Confidence 344555678999999999998655420000 001234444 1211 2578999999999999
Q ss_pred EEEEEee
Q psy3140 126 YMDVKIL 132 (138)
Q Consensus 126 yidvaI~ 132 (138)
.+.|.+.
T Consensus 90 ~~tlhLv 96 (116)
T 1wgh_A 90 TTVMHLV 96 (116)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 8555443
No 57
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.81 E-value=14 Score=23.57 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=42.7
Q ss_pred eeee-ecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 50 LQIY-TWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 50 lqIY-tW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
+.|- ...+.|+.+|-..|.+..- .+... .+++|. + .. -+|++||++++...|+.|.
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~g-ip~~~----qrL~~~----g--------k~------L~d~~tL~~~~i~~g~~i~ 77 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFD-VRPEC----QRLFYR----G--------KQ------LENGYTLFDYDVGLNDIIQ 77 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSC-CCTTT----EEEEET----T--------EE------CCSSSBHHHHTCCTTCEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHC-cChhh----EEEEEC----C--------eE------CCCCCCHHHCCCCCCCEEE
Confidence 4553 6688999999999987642 11111 234441 1 11 2478999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+.+..
T Consensus 78 l~~~~~g 84 (89)
T 1wy8_A 78 LLVRPDS 84 (89)
T ss_dssp EEECCCC
T ss_pred EEEeCCC
Confidence 9887654
No 58
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=44.74 E-value=6.9 Score=25.37 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=40.6
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+-...++|+.+|-..|.+..- .+... .+++|. |+. -+|++||++++...|+.|.+
T Consensus 17 ~~~~v~~~~TV~~LK~~I~~~~g-ip~~~----qrL~~~-----------------Gk~-L~D~~tL~~~~I~~g~~i~l 73 (88)
T 2hj8_A 17 STYEVRLTQTVAHLKQQVSGLEG-VQDDL----FWLTFE-----------------GKP-LEDQLPLGEYGLKPLSTVFM 73 (88)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTC-SCTTT----EEEESS-----------------SSC-CCTTSBHHHHHCSTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhC-CChhH----EEEEEC-----------------CEE-CCCCCcHHHcCCCCCCEEEE
Confidence 44455688999999999987542 11111 233441 111 24789999999999999999
Q ss_pred EeeCCC
Q psy3140 130 KILTPK 135 (138)
Q Consensus 130 aI~pP~ 135 (138)
.+.++.
T Consensus 74 ~~~~~g 79 (88)
T 2hj8_A 74 NLRLRG 79 (88)
T ss_dssp EEC---
T ss_pred EEEcCC
Confidence 887654
No 59
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=43.62 E-value=16 Score=24.98 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=40.4
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.+-.=+++|+.+|...-.+..--.... +++++| | |.| -+++.|++|+....||-||
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~----~IrllF-D--GdR---------------Ldp~~tp~DlemeD~D~ID 78 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHE----RIRLEF-E--GEW---------------LDPNDQVQSTELEDEDQVS 78 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCT----TCEEEE-T--TEE---------------CCTTSBGGGSSCCTTCEEE
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCc----eEEEEE-c--Ccc---------------cCccCChhhhCCcCCceee
Confidence 46666678899888877665533222222 244444 3 111 2678999999999999999
Q ss_pred EEe
Q psy3140 129 VKI 131 (138)
Q Consensus 129 vaI 131 (138)
|-|
T Consensus 79 vmL 81 (82)
T 3goe_A 79 VVL 81 (82)
T ss_dssp EEC
T ss_pred eee
Confidence 965
No 60
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=43.34 E-value=10 Score=25.21 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=49.9
Q ss_pred CCCccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeee
Q psy3140 20 KTCPLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRD 99 (138)
Q Consensus 20 ktcPfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rd 99 (138)
+..+=.+.+|++.-. ..++.+-.-++.|+.+|-..|.+..--. .. ..+++|. |
T Consensus 16 ~~~~~~m~I~Vk~~~------------g~~~~l~v~~~~tv~~lK~~i~~~~gip-~~----~qrLif~----G------ 68 (97)
T 1wyw_B 16 KKEGEYIKLKVIGQD------------SSEIHFKVKMTTHLKKLKESYCQRQGVP-MN----SLRFLFE----G------ 68 (97)
T ss_dssp ---CCEEEEEEECTT------------CCEEEEEEETTSCTHHHHHHHHHHHTCC-GG----GEEEEET----T------
T ss_pred CCCCCcEEEEEEeCC------------CCEEEEEECCCCcHHHHHHHHHHHHCCC-hh----hEEEEEC----C------
Confidence 345556788877411 1245556668999999999997753111 01 2455552 1
Q ss_pred cceeeeCCCCCCcccccccCCCCCCcEEEEEeeC
Q psy3140 100 IGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILT 133 (138)
Q Consensus 100 lGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~p 133 (138)
.. -+|.+||++++..-||.|.+.+..
T Consensus 69 --k~------L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 69 --QR------IADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp --EE------CCTTCCHHHHTCCTTCEEEEEESS
T ss_pred --eE------cCCCCCHHHCCCCCCCEEEEEEec
Confidence 11 146799999999999999998754
No 61
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.34 E-value=13 Score=23.46 Aligned_cols=64 Identities=9% Similarity=-0.054 Sum_probs=42.9
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.+-...++|+.||-..|.+..- .+... .+++|. + + . -+|++||++++...|+-|.
T Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~----qrL~~~----G----k----~------L~d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 19 SYAYAINPNSFILGLKQQIEDQQG-LPKKQ----QQLEFQ----G----Q----V------LQDWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp EEEEEECSSSBHHHHHHHHHHHTC-CCTTT----EEEEET----T----E----E------CCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHhC-CChHH----EEEEEC----C----E----E------ccCCCCHHHCCCCCCCEEE
Confidence 345556688999999999987642 11111 234442 1 1 1 2477999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+.+..
T Consensus 76 l~~~~~G 82 (87)
T 1wh3_A 76 LSKKKGS 82 (87)
T ss_dssp EEECSCC
T ss_pred EEEeccC
Confidence 9886654
No 62
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=42.12 E-value=53 Score=22.83 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=43.3
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
.++++-.=++.+|+.|.....+..--... +++++| | | .. -.++.|++++..+-||-|
T Consensus 37 ~~i~fkVk~~t~l~kL~~ay~ek~gi~~~-----~~rfiF-d---G-------------~~-L~~~~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 37 AEMFFRIKSRTALKKLIDTYCKKQGISRN-----SVRFLF-D---G-------------TP-IDETKTPEELGMEDDDVI 93 (110)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHTCCSS-----SCEEES-S---S-------------CB-CCSSSHHHHHHCSSEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcc-----cEEEEE-C---C-------------EE-cCCCCCHHHcCCCCCCEE
Confidence 36788888899999998887764221111 345555 2 1 11 136799999999999999
Q ss_pred EEEeeC
Q psy3140 128 DVKILT 133 (138)
Q Consensus 128 dvaI~p 133 (138)
+|-+..
T Consensus 94 dv~~~q 99 (110)
T 2k8h_A 94 DAMVEQ 99 (110)
T ss_dssp EEECCC
T ss_pred EEEEcc
Confidence 998753
No 63
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=41.73 E-value=36 Score=25.93 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=43.4
Q ss_pred CceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCc
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGD 125 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGD 125 (138)
..+.|-...+.|+.+|-..|.+.. |..+ .+++| .|+. -+|++||++++.+.|+
T Consensus 116 kt~~l~V~~s~TV~~LK~kI~~~~gIp~~~-------QrLi~-----------------~Gk~-L~D~~tL~dygI~~gs 170 (189)
T 3q3f_A 116 KTITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIF-----------------AGKQ-LEDGRTLSDYNIQKES 170 (189)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGG-------CCEEE-----------------TTEE-CCTTCBGGGGTCCTTC
T ss_pred CEEEEEeCCCCcHHHHHHHHHhccCCCHHH-------EEEEE-----------------CCEE-CCCCCCHHHCCCCCCC
Confidence 456677779999999999998753 2221 12233 1111 2468999999999999
Q ss_pred EEEEEeeCCC
Q psy3140 126 YMDVKILTPK 135 (138)
Q Consensus 126 yidvaI~pP~ 135 (138)
-|.+.+....
T Consensus 171 tI~LvlrlrG 180 (189)
T 3q3f_A 171 TLHLVLRLRG 180 (189)
T ss_dssp EEEECCCCCC
T ss_pred EEEEEEEcCC
Confidence 9999876554
No 64
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=40.11 E-value=11 Score=24.17 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=11.6
Q ss_pred eecC-CCCCCCCCCC
Q psy3140 29 FTNF-GKHNNVSDFH 42 (138)
Q Consensus 29 F~~~-g~~h~~~eF~ 42 (138)
|+++ ++||.++||+
T Consensus 46 FCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 46 FCQQCSRFHVLEEFD 60 (60)
T ss_dssp CCSSSCSCCBTTSCC
T ss_pred hhhhccCccCcccCC
Confidence 6655 8999999996
No 65
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=40.09 E-value=19 Score=25.08 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=43.0
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
.++++-.=++.+|+-|-....+..--.+ . +++++| | | .- -.++.|.+++..+-||.|
T Consensus 41 ~~i~fkIk~tt~l~kL~~ay~ek~gi~~-~----~~rF~F-d---G--------~r------l~~~~Tp~dl~medgD~I 97 (106)
T 2eke_C 41 SEIFFKIKKTTPLRRLMEAFAKRQGKEM-D----SLRFLY-D---G--------IR------IQADQTPEDLDMEDNDII 97 (106)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCG-G----GEEEEE-T---T--------EE------CCTTCCTTTTTCCTTEEE
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHhCCCc-c----cEEEEE-C---C--------eE------cCCCCCHHHcCCCCCCEE
Confidence 3677777889999998888766432211 1 455555 2 1 11 136799999999999999
Q ss_pred EEEee
Q psy3140 128 DVKIL 132 (138)
Q Consensus 128 dvaI~ 132 (138)
+|-+.
T Consensus 98 dv~~~ 102 (106)
T 2eke_C 98 EAHRE 102 (106)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 99875
No 66
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=39.13 E-value=13 Score=26.12 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHhhCcccc
Q psy3140 58 ATLRELTNLIREVNPEAQ 75 (138)
Q Consensus 58 ~TLrEL~~Llk~~~p~~r 75 (138)
+|++||...|.+.+|..+
T Consensus 43 ~TV~~Ll~~L~~~~~~~~ 60 (114)
T 1wgk_A 43 WDIRNLLVWIKKNLLKER 60 (114)
T ss_dssp CBHHHHHHHHTTTTCCSC
T ss_pred CCHHHHHHHHHHHccchh
Confidence 699999999999997753
No 67
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=38.69 E-value=22 Score=25.39 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=39.7
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCC---cEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRG---TCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~g---tr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
+.+-.-.+.|..+|-..|.+..|..-+-| .-=..++|| .|+. -+|++||.++++..|+.
T Consensus 30 ~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy-----------------~GK~-LeD~~TL~~y~I~~~~~ 91 (125)
T 2gow_A 30 KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY-----------------QGRF-LHGNVTLGALKLPFGKT 91 (125)
T ss_dssp EEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES-----------------SSSE-EESSCBTGGGCCCTTSE
T ss_pred EEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE-----------------CCcC-CCCCCcHHHcCCCCCCc
Confidence 44444578999999999998765420000 001234444 2222 24789999999999997
Q ss_pred EEEEee
Q psy3140 127 MDVKIL 132 (138)
Q Consensus 127 idvaI~ 132 (138)
+.+-+.
T Consensus 92 ~tlhlv 97 (125)
T 2gow_A 92 TVMHLV 97 (125)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 544433
No 68
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=38.27 E-value=43 Score=22.37 Aligned_cols=56 Identities=7% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
..-|+++|...|.+++.-.-.+-.-++.+.+... .+. .++.+|+|....-||.|-|
T Consensus 25 ~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~------------~~L------~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 25 DYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKD------------KVF------SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGT------------EEE------ETTSBTGGGTCCTTCEEEE
T ss_pred CchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCC------------EEE------cCCCEEeeCCcCCCCEEEE
Confidence 4568899999999988653221121455554322 122 3678999999999999865
No 69
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=37.85 E-value=16 Score=24.01 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=40.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.+-...+.|+.+|-..|.+.. |..+ .+++|. |.. -+|++||++++...|+.|
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~-------qrLi~~------------Gk~------L~D~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPED-------QVVLLA------------GAP------LEDEATLGQCGVEALTTL 84 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGG-------CEEEET------------TEE------CCTTSBHHHHTCCSSCEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhH-------EEEEEC------------CEE------CCCCCcHHHCCCCCCCEE
Confidence 3444467899999999997753 2211 133442 111 247899999999999999
Q ss_pred EEEeeCC
Q psy3140 128 DVKILTP 134 (138)
Q Consensus 128 dvaI~pP 134 (138)
.+.+.+.
T Consensus 85 ~lv~rl~ 91 (93)
T 2l7r_A 85 EVAGRML 91 (93)
T ss_dssp EEECCCC
T ss_pred EEEEecC
Confidence 9887553
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=37.78 E-value=26 Score=24.00 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=40.2
Q ss_pred eeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 51 QIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 51 qIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+-.-.++|+.+|-..|.+.. |.. ..+++|. |.. -+|++||++++...|+.|.
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~-------~qrL~~~------------g~~------L~d~~tL~~~~i~~~~~i~ 144 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPD-------QQRLIFA------------GKQ------LEDGRTLSDYNIQKESTLH 144 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGG-------GEEEEET------------TEE------CCTTSBTGGGTCCTTCEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChh-------hEEEEEC------------CEE------CCCCCCHHHcCCCCCCEEE
Confidence 333446799999999887743 221 1334442 111 2478999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+.++.
T Consensus 145 l~~r~~G 151 (152)
T 3b08_A 145 LVLRLRG 151 (152)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 8876653
No 71
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.30 E-value=23 Score=23.23 Aligned_cols=64 Identities=13% Similarity=-0.035 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCC
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPK 135 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~ 135 (138)
.+.|+.+|=..|.+..- .+...- +++|.+. . |..+. .-.+|++||.+++.+.|+-|.|.-.-|.
T Consensus 27 ~~~TV~~lK~ki~~~~g-ip~~~q----rL~~~~~-~--------g~~~~--~l~~D~~tL~~y~i~~g~~l~v~d~~P~ 90 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVG-SPASCM----ELELYGA-D--------DKFYS--KLDQEDALLGSYPVDDGCRIHVIDHSGS 90 (95)
T ss_dssp TTSBHHHHHHHHHHHTC-SCTTTC----BCEEECS-S--------SCEEE--ECCCSSSBTTSSSCCTTCEEEEBCCSCC
T ss_pred ccCHHHHHHHHHHHHHC-CCHHHe----EEEEeCC-C--------Ccccc--ccCCCcCCHhHCCCCCCCEEEEEECCcc
Confidence 67899999999987642 111111 2222221 0 11100 0135789999999999999988776654
No 72
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=36.12 E-value=29 Score=23.40 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=41.3
Q ss_pred eeeeecC-CCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 50 LQIYTWM-DATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 50 lqIYtW~-d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
+.+-.-. ++|+.+|-..|.+..- .+...- +++|. | + --+|++||++++...|+.|.
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~g-ip~~~Q----rL~~~----G-------------k-~L~D~~tL~~y~I~~g~~l~ 99 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQ-IPANKQ----KLSGK----A-------------G-FLKDNMSLAHYNVGAGEILT 99 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTT-CCTTTS----EEECS----S-------------S-BCCTTSBTTTTTCSSSCEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHC-CCHHHe----EEEEC----C-------------E-ECCCCCcHHHCCCCCCCEEE
Confidence 4455565 8999999999987641 111111 22331 1 1 12578999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+....
T Consensus 100 l~~r~~G 106 (111)
T 1we6_A 100 LSLRERS 106 (111)
T ss_dssp EECSSCC
T ss_pred EEEEcCC
Confidence 8876543
No 73
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=36.06 E-value=13 Score=24.05 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=40.3
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
++.+..=++.+|+.|.....+..--.. . +++++| | | .- -.++.|.+++..+-||-|+
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~-~----~~rf~f-d---G--------~~------l~~~~Tp~~l~medgD~Id 76 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSG-H----KLSFFF-D---G--------TK------LSGKELPADLGLESGDLIE 76 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTT-C----CCEEEE-T---T--------EE------CCSCCCHHHHTCCTTCEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCc-c----cEEEEE-C---C--------EE------cCCCCCHHHcCCCCCCEEE
Confidence 578888889999999888766432111 1 345554 2 1 11 1467899999999999999
Q ss_pred E
Q psy3140 129 V 129 (138)
Q Consensus 129 v 129 (138)
|
T Consensus 77 v 77 (79)
T 3a4r_A 77 V 77 (79)
T ss_dssp E
T ss_pred E
Confidence 8
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=35.58 E-value=23 Score=25.55 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=43.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+.|-...+.|+.||=..|.+.. |..+ .+++|. | +. -+|++||.+++...|+-|
T Consensus 33 ~~l~v~~~~tV~~lK~~I~~~~gip~~~-------QrL~~~----g----~~----------L~d~~tL~~~~i~~~~~l 87 (172)
T 3u30_A 33 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFA----G----KQ----------LEDGRTLSDYNIQKESTL 87 (172)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGG-------EEEEET----T----EE----------CCTTCBTGGGTCCTTCEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHH-------EEEEEC----C----cc----------ccccCCHhHcCCccccee
Confidence 4455668999999999998743 2221 244441 1 11 257899999999999999
Q ss_pred EEEeeCCCC
Q psy3140 128 DVKILTPKR 136 (138)
Q Consensus 128 dvaI~pP~~ 136 (138)
.+.+..+..
T Consensus 88 ~l~~~~~gg 96 (172)
T 3u30_A 88 HLVLRLRGG 96 (172)
T ss_dssp EEEECCCCC
T ss_pred eeeeccccc
Confidence 998876654
No 75
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=35.54 E-value=15 Score=25.65 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred cccccccCCCCCCcEEEEEeeC
Q psy3140 112 DNKTLQQCRFIIGDYMDVKILT 133 (138)
Q Consensus 112 d~kTL~~~rF~iGDyidvaI~p 133 (138)
+..|-+++....||.|||..++
T Consensus 72 ~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 72 PTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp TTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCHhHcCCCCCCEEEEEEec
Confidence 5689999999999999998875
No 76
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=34.10 E-value=26 Score=22.54 Aligned_cols=60 Identities=22% Similarity=0.152 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeC
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILT 133 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~p 133 (138)
.++|+.||-..|.+...-... + ++++|.-. + |.+- ..++++||.++++..|+-|-+.-..
T Consensus 19 ~~~Tv~~Lk~~I~~~~gi~~~---~--qrL~~~~p--~----k~l~-------l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 19 SRTRLRELQGQIAAITGIAPG---S--QRILVGYP--P----ECLD-------LSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp TTCBHHHHHHHHHHHTCCCTT---T--CCCEESSC--C----CCCC-------CCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CCCCHHHHHHHHHHHhCCCcc---c--eEEEeCCC--C----cccc-------cCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 468999999999886431110 0 12222110 0 1110 0247899999999999988776543
No 77
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=33.92 E-value=36 Score=22.34 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeCCC
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILTPK 135 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~pP~ 135 (138)
++.|+.+|=..|.+..-- +... =+++|-|.. +.|. |. -.+|++||.+.+.+.|.-|-+--..|+
T Consensus 23 ~s~TI~~lK~ki~~~~Gi-p~~~----QrLi~~~~~-~~~~----g~------~l~d~~tL~~Y~i~~g~~ihlvd~~P~ 86 (86)
T 4b6w_A 23 LAQTIESIKENVFTHFAT-PPEY----MQLQLIDDR-GITI----EK------NMANDKQLGYYQCRDEFVIHVVDLQPS 86 (86)
T ss_dssp TTSBHHHHHHHHHTTSCC-CGGG----EEEEEECTT-SCEE----ES------SCCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred ccCcHHHHHHHHHHHHCC-CHHH----EEEEEecCC-CCce----ee------EcCCCCCHHHCCCCCCCEEEEEeCCCC
Confidence 678999999888775411 1111 245665643 2342 22 246889999999999999988777764
No 78
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=29.98 E-value=40 Score=24.75 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=42.5
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|-...+.|..+|-..|.+...- +... .+++| +| +. -+|++||++++.+.|+-|.
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gi-p~~~----QrLi~----~G-------------k~-L~D~~tL~~y~I~~gstI~ 68 (169)
T 3l0w_B 12 TITLEVESSDTIDNVKSKIQDKEGI-PPDQ----QRLIF----AG-------------KQ-LEDGRTLSDYNIQKESTLH 68 (169)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCC-CTTT----EEEEE----TT-------------EE-CCTTSBGGGGTCCTTCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCc-CHHH----EEEEE----CC-------------cc-ccCcCcHHHcCCCCCCEEE
Confidence 3455566889999999999775321 1111 13343 11 11 2578999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+....
T Consensus 69 Lvlrl~G 75 (169)
T 3l0w_B 69 LVLRLRG 75 (169)
T ss_dssp EEECCCC
T ss_pred EEEEecc
Confidence 9887654
No 79
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=29.61 E-value=1.3e+02 Score=24.07 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHhhCccc-cCCCcEEEEEEEecCC--CCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 56 MDATLRELTNLIREVNPEA-QQRGTCFYFTLLTPER--GTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~-r~~gtr~~F~~VypD~--~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+++|..|....|++..|++ ...... +++--+|. +.+++ -+..+||+.+.++.||-|..
T Consensus 21 ~~~~v~~~~~~i~e~~~~~~~~~~~~--y~l~~~~~~~~~~~W--------------l~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 21 PSTMVYDACRMIRERIPEALAGPPND--FGLFLSDDDPKKGIW--------------LEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp TTCBHHHHHHHHHTTCGGGGSSCGGG--EEEEECCSSGGGCEE--------------CCTTSBGGGGTCCTTCEEEE
T ss_pred CCCCHHHHHHHHHHhcccccCCCHHH--CeEeccCCCCCcCEe--------------ccCCCCHHHhCCCCCceeec
Confidence 6899999999999999986 222222 33333332 11111 14567999999999987654
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=28.62 E-value=25 Score=23.74 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=46.7
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCCCceeeeec-CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecce
Q psy3140 24 LLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTW-MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQ 102 (138)
Q Consensus 24 fLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW-~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGs 102 (138)
++|||-.+.|.+ + ++ .- .++|+.||-..|.+...-.... .+++|.. +.++
T Consensus 8 M~irvrs~~G~~-~------------v~--v~~~~~Tv~~LK~kI~~~~gip~~~-----QrL~~~~--------~~~~- 58 (107)
T 1wf9_A 8 TMLRVRSRDGLE-R------------VS--VDGPHITVSQLKTLIQDQLQIPIHN-----QTLSTNR--------NLLL- 58 (107)
T ss_dssp EEEEEECSSCEE-E------------EE--ECCTTSBHHHHHHHHHHHSCCCTTT-----CCCBSSG--------GGGT-
T ss_pred EEEEEECCCCCE-E------------EE--ECCCCCcHHHHHHHHHHHhCcCccc-----CEEEECC--------cccc-
Confidence 677777777742 2 22 23 6789999999998866421111 1222211 1111
Q ss_pred eeeCC------CC---CCcccccccCCCCCCcEEEEEee
Q psy3140 103 TICGQ------KG---PDDNKTLQQCRFIIGDYMDVKIL 132 (138)
Q Consensus 103 v~~g~------~~---~dd~kTL~~~rF~iGDyidvaI~ 132 (138)
++ .- .+|++||.++++.-||.|-+...
T Consensus 59 ---~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 59 ---AKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp ---CCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred ---ccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 11 00 36889999999999999877654
No 81
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=28.43 E-value=24 Score=23.32 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=42.1
Q ss_pred eeeeec--CCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCC-CCCcE
Q psy3140 50 LQIYTW--MDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRF-IIGDY 126 (138)
Q Consensus 50 lqIYtW--~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF-~iGDy 126 (138)
+.|-.. .+.|..+|=..|.+..+..+...- +++| + |.+ -+|++||++++. ..|.-
T Consensus 14 ~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~Q----rLi~----~--------Gk~------L~D~~tL~~y~I~~~~st 71 (87)
T 2lxa_A 14 FSIEHDFSPSDTILQIKQHLISEEKASHISEI----KLLL----K--------GKV------LHDNLFLSDLKVTPANST 71 (87)
T ss_dssp EECCEECCTTCBHHHHHHHHHHTTSCSSSTTE----EEEE----T--------TEE------CCTTCBHHHHCCCGGGCE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHhcCCChHHE----EEEE----C--------CEE------CcCcCCHHHcCCCCCCCE
Confidence 444444 789999999999333333222222 3333 1 111 257899999999 68999
Q ss_pred EEEEeeCCCC
Q psy3140 127 MDVKILTPKR 136 (138)
Q Consensus 127 idvaI~pP~~ 136 (138)
|.|.+.|-+.
T Consensus 72 l~v~~~~~~~ 81 (87)
T 2lxa_A 72 ITVMIKPNLE 81 (87)
T ss_dssp EEEEECCCCC
T ss_pred EEEEcCCCcc
Confidence 9999988664
No 82
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=27.54 E-value=41 Score=24.18 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHhhCccccCCCcE---EEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 56 MDATLRELTNLIREVNPEAQQRGTC---FYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 56 ~d~TLrEL~~Llk~~~p~~r~~gtr---~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|..+|-..|.+..|...- |.- =.-++|| +|+ --+|++||++++++.||+
T Consensus 36 psdTV~~lK~kI~~~~p~dke-giP~~~~qQrLIy-----------------~GK-~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 36 DATTVSALKETVISEWPREKE-NGPKTVKEVKLIS-----------------AGK-VLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp TTCBHHHHHHHHHHHSCTTCS-SSCCSGGGEEEEE-----------------TTE-ECCTTSBGGGGSCCTTSC
T ss_pred ccCHHHHHHHHHHhhcccccc-cCCCChhhEEEEE-----------------CCe-ECcCCCcHHHcCCCcCCc
Confidence 689999999999876654210 000 0123343 121 136889999999999986
No 83
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=27.45 E-value=23 Score=24.71 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=12.8
Q ss_pred CCCCCcEEEEEeeCC
Q psy3140 120 RFIIGDYMDVKILTP 134 (138)
Q Consensus 120 rF~iGDyidvaI~pP 134 (138)
.|..||++|+-|.|-
T Consensus 33 ~yk~Gd~VdIk~~~s 47 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPS 47 (96)
T ss_dssp CCCTTCEEEECCCTT
T ss_pred HcCCCCEEEEEecCC
Confidence 689999999988763
No 84
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.02 E-value=1.3e+02 Score=19.22 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=39.9
Q ss_pred eeeeecCCCCHHHHHHHHHhhCcc-ccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccC--CCCCCcE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPE-AQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQC--RFIIGDY 126 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~-~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~--rF~iGDy 126 (138)
+.|-.-.++|..+|=..|.+..|. .+...=| ++| .|+. -+|++||.++ +...|+.
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Qr----Li~-----------------~Gk~-L~D~~tL~~~~~~i~~~~~ 79 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQR----LIY-----------------SGKL-LLDHQCLRDLLPKQEKRHV 79 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCE----EEE-----------------TTEE-CCSSSCHHHHSCSSSCSEE
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeE----EEE-----------------CCEE-CcCcCCHHHHhcCCCCCCE
Confidence 444444889999999999997643 1111122 222 1211 2467899999 9999998
Q ss_pred EEEEeeC
Q psy3140 127 MDVKILT 133 (138)
Q Consensus 127 idvaI~p 133 (138)
|.+.+.+
T Consensus 80 i~lv~~~ 86 (93)
T 1wgd_A 80 LHLVCNV 86 (93)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 8876654
No 85
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=24.72 E-value=52 Score=23.31 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=41.6
Q ss_pred CceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEE
Q psy3140 48 NQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYM 127 (138)
Q Consensus 48 ~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 127 (138)
+++++-.=++.+|+-|.....+..-- ... +++++| | | .- -.++.|.+++....||.|
T Consensus 51 ~ev~fkIk~tt~L~KLm~aY~er~Gl-~~~----~irFlF-D---G--------~r------I~~~~TP~dL~MEDgD~I 107 (115)
T 3kyd_D 51 SEIHFKVKMTTHLKKLKESYCQRQGV-PMN----SLRFLF-E---G--------QR------IADNHTPKELGMEEEDVI 107 (115)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTC-CTT----SEEEEE-T---T--------EE------CCTTCCTTTTTCCTTCEE
T ss_pred CEEEEEEccCChHHHHHHHHHHHhCC-Chh----hEEEEE-C---C--------eE------CCCCCCHHHcCCCCCCEE
Confidence 46777788899988887777654321 112 344444 2 1 11 136799999999999999
Q ss_pred EEEee
Q psy3140 128 DVKIL 132 (138)
Q Consensus 128 dvaI~ 132 (138)
+|-+.
T Consensus 108 dV~~~ 112 (115)
T 3kyd_D 108 EVYQE 112 (115)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 99763
No 86
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=24.33 E-value=18 Score=24.99 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=13.8
Q ss_pred EEeecC-CCCCCCCCCCC
Q psy3140 27 RVFTNF-GKHNNVSDFHN 43 (138)
Q Consensus 27 RvF~~~-g~~h~~~eF~~ 43 (138)
.=|+++ ++||.++||+.
T Consensus 44 ~RFCQQC~rFH~L~eFD~ 61 (88)
T 1ul5_A 44 KRYCQQCGKFHLLPDFDE 61 (88)
T ss_dssp EEECTTTSSEEEGGGBCS
T ss_pred eHHHHHhccccChhhhcc
Confidence 347665 99999999996
No 87
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=24.25 E-value=40 Score=20.43 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=14.0
Q ss_pred ccccCCCCCCcEEEEEee
Q psy3140 115 TLQQCRFIIGDYMDVKIL 132 (138)
Q Consensus 115 TL~~~rF~iGDyidvaI~ 132 (138)
.-.++.|..||.|.|--.
T Consensus 23 ~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 23 FGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp CSCBCCBCTTCEEEEEEC
T ss_pred CCCcCCcCCCCEEEEEeC
Confidence 445899999999987543
No 88
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=23.99 E-value=22 Score=24.81 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=13.3
Q ss_pred EeecC-CCCCCCCCCCC
Q psy3140 28 VFTNF-GKHNNVSDFHN 43 (138)
Q Consensus 28 vF~~~-g~~h~~~eF~~ 43 (138)
=|+++ ++||.|+||+.
T Consensus 50 RFCQQCsrFH~L~eFD~ 66 (94)
T 1ul4_A 50 RFCQQCSRFHDLQEFDE 66 (94)
T ss_dssp EECTTTSSEEETTTCCS
T ss_pred HHHHHHhccCCHHHhcc
Confidence 46655 99999999996
No 89
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=23.58 E-value=42 Score=22.74 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=42.8
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|-...++|+.+|-..|.+..- .+...- +++|. |.. -+|++||++++...|+-|.
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~Q----rL~~~------------Gk~------L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 47 GLVFTLPLTDQVSVIKVKIHEATG-MPAGKQ----KLQYE------------GIF------IKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp EEEEEECSCSBTHHHHHHHHHHSS-CCTTTE----EEEET------------TEE------ECTTSBHHHHTCCSSCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC-CChHHE----EEEEC------------CEE------CCCCCCHHHCCCCCCCEEE
Confidence 455666789999999999987541 111122 23331 111 2467999999999999999
Q ss_pred EEeeCCC
Q psy3140 129 VKILTPK 135 (138)
Q Consensus 129 vaI~pP~ 135 (138)
+.+....
T Consensus 104 lv~rl~G 110 (115)
T 1we7_A 104 LALKERS 110 (115)
T ss_dssp EEECCCS
T ss_pred EEEEcCC
Confidence 8876543
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=22.69 E-value=67 Score=22.11 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=40.5
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEEEeeC
Q psy3140 54 TWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKILT 133 (138)
Q Consensus 54 tW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~p 133 (138)
.-++.|+.+|-..|.+..- .+... -+++|.+. .++. +. .-.+|++||++.+.+.|+-|-|.-+-
T Consensus 24 v~~~~TV~~lK~ki~~~~G-ip~~~----qrL~~~g~-~~~~--------~~--~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 24 YPAGMSLNDLKKKLELVVG-TTVDS----MRIQLFDG-DDQL--------KG--ELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp EETTSBHHHHHHHHHHHHC-CCTTT----EEEEEECS-SSSE--------EE--ECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred eCCCCcHHHHHHHHHHHhC-CCHHH----eEEEEecC-CCcc--------cc--ccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 3478899999998877531 11112 34444442 1111 00 00257899999999999999887765
Q ss_pred CC
Q psy3140 134 PK 135 (138)
Q Consensus 134 P~ 135 (138)
|.
T Consensus 88 p~ 89 (122)
T 1t0y_A 88 GG 89 (122)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 91
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=22.25 E-value=1.8e+02 Score=19.38 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=42.6
Q ss_pred ceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDY 126 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDy 126 (138)
.+.|-...++|+.+|-..|.+.. |..+ .+++|. |+ . -+|++||+++++..|+-
T Consensus 47 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~-------QrLi~~----Gk--------~------L~D~~tL~~~gI~~gs~ 101 (111)
T 3vdz_A 47 TITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFA----GK--------Q------LEDGRTLSDYNIQKEST 101 (111)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGG-------EEEEET----TE--------E------CCTTSBTTTTTCCTTCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCChHH-------EEEEEC----CE--------E------CCCCCcHHHCCCCCCCE
Confidence 45566678999999999998753 2221 255552 11 1 24678999999999999
Q ss_pred EEEEeeCC
Q psy3140 127 MDVKILTP 134 (138)
Q Consensus 127 idvaI~pP 134 (138)
|.+.+...
T Consensus 102 I~l~~rl~ 109 (111)
T 3vdz_A 102 LHLVLRLR 109 (111)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99987654
No 92
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=22.02 E-value=32 Score=23.03 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=36.4
Q ss_pred ecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 54 TWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 54 tW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
.-++.|+.+|=..|.+..- .+...-|+.|. + +|++. + .-.+|++||.+++.+.|+-|-+
T Consensus 34 v~~~~TV~~LK~kI~~~~G-iP~~~QrL~~~----~--~g~~~-~---------~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 34 LAKDLTVAQLKTKLEILTG-GCAGTMKVQVF----K--GDTCV-S---------TMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EETTCBHHHHHHHHHHHHC-SCTTTEEEEEE----E--TTEEE-E---------ECCCTTSBHHHHCCSSSCEEEE
T ss_pred eCccCHHHHHHHHHHHHHC-cCHHHeEEEEe----c--CCccc-c---------eeCCCCCCHhHCCcCCCCEEEE
Confidence 3478899999888877531 22233444443 2 11110 0 1136889999999999998765
No 93
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=21.86 E-value=2e+02 Score=19.69 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=33.1
Q ss_pred EEEEeecC-CCCCCCCCCCC--CCCCCceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEec
Q psy3140 25 LLRVFTNF-GKHNNVSDFHN--GFPPNQLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTP 88 (138)
Q Consensus 25 LLRvF~~~-g~~h~~~eF~~--~~P~~ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~Vyp 88 (138)
|+|||.+. |. .-+|.. .+ .=..||..+++..| .+.-+-.|.+++|+-
T Consensus 11 lIrVYtk~~G~---~pd~~dpviL--------~~~GsTv~Dfa~~I------H~di~~~fkyA~VwG 60 (93)
T 2eki_A 11 LVRIYTKPKGQ---LPDYTSPVVL--------PYSRTTVEDFCMKI------HKNLIKEFKYALVWG 60 (93)
T ss_dssp EEEEEECCTTS---CCCSSSCEEE--------ETTSCCHHHHHHHH------CTTCTTTEEEEEEBS
T ss_pred eEEEEeCCCCC---CCCCCCCEEE--------ecCCCCHHHHHHHH------HHHHHhhccEEEEec
Confidence 79999954 43 223433 33 12489999999998 566788899999973
No 94
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=21.85 E-value=48 Score=19.59 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=11.8
Q ss_pred ccCCCCCCcEEEEE
Q psy3140 117 QQCRFIIGDYMDVK 130 (138)
Q Consensus 117 ~~~rF~iGDyidva 130 (138)
.++.|..||.|.|.
T Consensus 18 ~eLs~~~Gd~i~v~ 31 (62)
T 2fpe_A 18 DELELEVDDPLLVE 31 (62)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CcCcCCCCCEEEEE
Confidence 46889999999984
No 95
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.82 E-value=53 Score=22.51 Aligned_cols=59 Identities=7% Similarity=0.107 Sum_probs=37.1
Q ss_pred ceeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEE
Q psy3140 49 QLQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMD 128 (138)
Q Consensus 49 ElqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 128 (138)
.+.|=.=++.|..+|=.+|.+..-- +... -+++| +| .+ -+|.+||++.+.+.|+-|.
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gi-p~~q----QrLif----~G--------k~------LkD~~TL~dY~I~dgstLh 89 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGT-QPNK----IVLQK----GG--------SV------LKDHISLEDYEVHDQTNLE 89 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTC-CGGG----EEEEE----TT--------EE------CCTTSBTGGGTCCTTCEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCC-CHHH----EEEEe----CC--------EE------ccCcCCHHHcCCCCCCEEE
Confidence 3444455789999999999764311 1111 12333 11 11 2578999999999999887
Q ss_pred EE
Q psy3140 129 VK 130 (138)
Q Consensus 129 va 130 (138)
+-
T Consensus 90 L~ 91 (93)
T 3plu_A 90 LY 91 (93)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 96
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=21.48 E-value=50 Score=18.98 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=12.2
Q ss_pred ccCCCCCCcEEEEEe
Q psy3140 117 QQCRFIIGDYMDVKI 131 (138)
Q Consensus 117 ~~~rF~iGDyidvaI 131 (138)
.++.|..||.|.|.=
T Consensus 16 ~eLs~~~Gd~i~v~~ 30 (58)
T 4e6r_A 16 DELSLVXGSRVTVME 30 (58)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CEeeEeCCCEEEEeE
Confidence 468999999998753
No 97
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=21.43 E-value=50 Score=19.23 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=12.2
Q ss_pred ccCCCCCCcEEEEEe
Q psy3140 117 QQCRFIIGDYMDVKI 131 (138)
Q Consensus 117 ~~~rF~iGDyidvaI 131 (138)
.++.|..||.|.|.=
T Consensus 15 ~eLs~~~Gd~i~v~~ 29 (58)
T 1jo8_A 15 NELTFVENDKIINIE 29 (58)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CCcccCCCCEEEEEE
Confidence 478899999998753
No 98
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.41 E-value=47 Score=20.65 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=13.0
Q ss_pred cccCCCCCCcEEEEEe
Q psy3140 116 LQQCRFIIGDYMDVKI 131 (138)
Q Consensus 116 L~~~rF~iGDyidvaI 131 (138)
=.++.|..||.|.|-=
T Consensus 32 ~~eLsf~~Gd~i~v~~ 47 (78)
T 1k1z_A 32 GGFLRLNPGDIVELTK 47 (78)
T ss_dssp CCCCCBCTTCEEEEEE
T ss_pred CCccCCCCCCEEEEEE
Confidence 4678999999998754
No 99
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=21.25 E-value=38 Score=22.84 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=42.1
Q ss_pred eeeeecCCCCHHHHHHHHHhhCccccCCCcEEEEEEEecCCCCCCeeeeecceeeeCCCCCCcccccccCCCCCCcEEEE
Q psy3140 50 LQIYTWMDATLRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDV 129 (138)
Q Consensus 50 lqIYtW~d~TLrEL~~Llk~~~p~~r~~gtr~~F~~VypD~~~~r~~~rdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 129 (138)
+.+=.-++.|+.+|-..|.+..- .+... -+++|.+.. |..+. .-.+|++||.+.+.+.|+-|-+
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~G-ip~~~----QrLi~~g~~---------g~~~~--~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCG-TSVNS----MALELYDDS---------GSKVA--VLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHC-CCTTS----EEEEEECSS---------SCBCC--CSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEeCCCChHHHHHHHHHHHHC-cCHHH----eEEEEecCC---------Ccccc--eecCCcCCHHHCCCCCCCEEEE
Confidence 55556688999999888877431 11122 344443321 11100 0136889999999999999877
Q ss_pred EeeCC
Q psy3140 130 KILTP 134 (138)
Q Consensus 130 aI~pP 134 (138)
.-..|
T Consensus 93 vd~~p 97 (97)
T 2kj6_A 93 IDLDP 97 (97)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 65443
No 100
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=21.23 E-value=51 Score=18.87 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=12.8
Q ss_pred ccCCCCCCcEEEEEee
Q psy3140 117 QQCRFIIGDYMDVKIL 132 (138)
Q Consensus 117 ~~~rF~iGDyidvaI~ 132 (138)
.++.|..||.|.|.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~ 30 (54)
T 2a28_A 15 DEISIDPGDIITVIRG 30 (54)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCccCCCCCEEEEEEe
Confidence 5788999999988543
No 101
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.99 E-value=37 Score=23.69 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=12.2
Q ss_pred CCCCCcEEEEEeeC
Q psy3140 120 RFIIGDYMDVKILT 133 (138)
Q Consensus 120 rF~iGDyidvaI~p 133 (138)
-|..||++|+-+.|
T Consensus 34 ~yk~Gd~VdIk~~g 47 (97)
T 3j21_R 34 EFEVGQRVHIVIEP 47 (97)
T ss_dssp CCCTTCEEEECCCT
T ss_pred HhcCCCEEEEEecC
Confidence 68999999998765
No 102
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=20.61 E-value=53 Score=18.97 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=12.3
Q ss_pred ccCCCCCCcEEEEEe
Q psy3140 117 QQCRFIIGDYMDVKI 131 (138)
Q Consensus 117 ~~~rF~iGDyidvaI 131 (138)
.++.|..||.|.|.=
T Consensus 17 ~eLs~~~Gd~i~v~~ 31 (58)
T 1sem_A 17 GELAFKRGDVITLIN 31 (58)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 478999999998753
No 103
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=20.48 E-value=69 Score=22.23 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=48.4
Q ss_pred ccEEEEeecCCCCCCCCCCCCCCCCCceeeeecCCCCHHHHHHHHHhhC--ccccCCCcEEEEEEEecCCCCCCeeeeec
Q psy3140 23 PLLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVN--PEAQQRGTCFYFTLLTPERGTSRFHVRDI 100 (138)
Q Consensus 23 PfLLRvF~~~g~~h~~~eF~~~~P~~ElqIYtW~d~TLrEL~~Llk~~~--p~~r~~gtr~~F~~VypD~~~~r~~~rdl 100 (138)
++=|+||++.-.=|. ..+.+-.=+++|..+|=..|.+.. |..+. |++|
T Consensus 22 ~i~l~v~v~d~~s~~----------~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q-------Rli~------------- 71 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHT----------VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ-------QWVI------------- 71 (105)
T ss_dssp CEEEEEEEEESSSCC----------EEEEEEECTTCBHHHHHHHHHHHHCCCGGGE-------EEEE-------------
T ss_pred cEEEEEEEEccCCCC----------ceEEEEECCcChHHHHHHHHHHHhCCCHHHE-------EEec-------------
Confidence 466777776422110 245555568999999999997754 33222 1222
Q ss_pred ceeeeCCCCCCcccccccCCC-CCCcEEEEEee
Q psy3140 101 GQTICGQKGPDDNKTLQQCRF-IIGDYMDVKIL 132 (138)
Q Consensus 101 Gsv~~g~~~~dd~kTL~~~rF-~iGDyidvaI~ 132 (138)
|++-.+|++||.+.+. +.|+-|-+-|+
T Consensus 72 -----ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 72 -----GQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp -----TTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred -----cCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 2223468999999999 69998887665
No 104
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.46 E-value=53 Score=19.37 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=12.9
Q ss_pred ccCCCCCCcEEEEEee
Q psy3140 117 QQCRFIIGDYMDVKIL 132 (138)
Q Consensus 117 ~~~rF~iGDyidvaI~ 132 (138)
.++.|..||.|.|.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 20 EDLEFQEGDIILVLSK 35 (62)
T ss_dssp SBCCBCSSCEEEEEEE
T ss_pred CCccCCCCCEEEEEEe
Confidence 3789999999988644
No 105
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=20.44 E-value=53 Score=19.44 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=12.4
Q ss_pred ccCCCCCCcEEEEEe
Q psy3140 117 QQCRFIIGDYMDVKI 131 (138)
Q Consensus 117 ~~~rF~iGDyidvaI 131 (138)
.++.|..||.|.|.=
T Consensus 21 ~eLs~~~Gd~i~v~~ 35 (64)
T 2jte_A 21 DELTFREGEIIHLIS 35 (64)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 378999999998854
No 106
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=20.40 E-value=54 Score=19.06 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=12.2
Q ss_pred ccCCCCCCcEEEEEe
Q psy3140 117 QQCRFIIGDYMDVKI 131 (138)
Q Consensus 117 ~~~rF~iGDyidvaI 131 (138)
.++.|..||.|.|.=
T Consensus 16 ~eLs~~~Gd~i~v~~ 30 (58)
T 2bz8_A 16 DELTISVGEIITNIR 30 (58)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CEeeECCCCEEEEEE
Confidence 478999999998753
No 107
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=20.21 E-value=55 Score=19.11 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.4
Q ss_pred ccCCCCCCcEEEEEe
Q psy3140 117 QQCRFIIGDYMDVKI 131 (138)
Q Consensus 117 ~~~rF~iGDyidvaI 131 (138)
.++.|..||.|.|.=
T Consensus 19 ~eLs~~~Gd~i~v~~ 33 (59)
T 2g6f_X 19 DELSFSKGDVIHVTR 33 (59)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 478999999998753
No 108
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=20.11 E-value=54 Score=19.79 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=11.7
Q ss_pred ccCCCCCCcEEEEE
Q psy3140 117 QQCRFIIGDYMDVK 130 (138)
Q Consensus 117 ~~~rF~iGDyidva 130 (138)
.++.|..||.|.|.
T Consensus 22 ~eLsf~~Gd~i~v~ 35 (68)
T 1tg0_A 22 DDLNFEKDQEIIVT 35 (68)
T ss_dssp TBCCBCTTCEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 46889999999875
Done!