RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3140
         (138 letters)



>gnl|CDD|219057 pfam06487, SAP18, Sin3 associated polypeptide p18 (SAP18).  This
           family consists of several eukaryotic Sin3 associated
           polypeptide p18 (SAP18) sequences. SAP18 is known to be
           a component of the Sin3-containing complex which is
           responsible for the repression of transcription via the
           modification of histone polypeptides. SAP18 is also
           present in the ASAP complex which is thought to be
           involved in the regulation of splicing during the
           execution of programmed cell death.
          Length = 121

 Score =  166 bits (422), Expect = 2e-54
 Identities = 70/120 (58%), Positives = 90/120 (75%), Gaps = 1/120 (0%)

Query: 13  EKTVDREKTCPLLLRVFTNFGKHNNVSDF-HNGFPPNQLQIYTWMDATLRELTNLIREVN 71
            K +DREKTCP LLRVF   G+H+++SDF     P N+LQIYTW+DATLRELT LI++V 
Sbjct: 2   IKPIDREKTCPFLLRVFYKNGRHHSLSDFSSGNVPSNELQIYTWLDATLRELTTLIKDVL 61

Query: 72  PEAQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQKGPDDNKTLQQCRFIIGDYMDVKI 131
           P A++RGT F F L+ P++   R+  +D+G  I GQKGPDDNKTLQ  +F+IGDY+DV I
Sbjct: 62  PPARRRGTRFSFRLVYPDKKRGRYLSKDLGSVISGQKGPDDNKTLQDAKFVIGDYLDVAI 121


>gnl|CDD|240432 PTZ00477, PTZ00477, rhoptry-associated protein; Provisional.
          Length = 524

 Score = 32.5 bits (74), Expect = 0.047
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 24  LLLRVFTNFGKHNNVSDFHNGFPPNQLQIYTWMDATLRELTNLIREVN 71
             L VF N G H   SDF++ F   + +     + TLR  TN I + N
Sbjct: 128 TALYVFKNSGAHQG-SDFYDRFRKIKNKYRMSTERTLRSFTNQILKRN 174


>gnl|CDD|221301 pfam11899, DUF3419, Protein of unknown function (DUF3419).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria and eukaryotes.
           Proteins in this family are typically between 398 to 802
           amino acids in length.
          Length = 376

 Score = 28.7 bits (65), Expect = 0.95
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 8/43 (18%)

Query: 35  HNNVSDFHNGFPPNQLQIYT------WMDATLRELTNLIREVN 71
            +++++     P   L          WMD    +L  L RE+ 
Sbjct: 278 TDSLTEVLARLPAGSLTRAVLLDAMDWMDPE--QLNALWREIT 318


>gnl|CDD|131745 TIGR02698, CopY_TcrY, copper transport repressor, CopY/TcrY family.
            This family includes metal-fist type transcriptional
           repressors of copper transport systems such as copYZAB
           of Enterococcus hirae and tcrYAZB (transferble copper
           resistance) of an Enterocuccus faecium plasmid. High
           levels of copper can displace zinc and prevent binding
           by the repressor, activating efflux by copper resistance
           transporters. The most closely related proteins excluded
           by this model are antibiotic resistance regulators
           including the methicillin resistance regulatory protein
           MecI [Transport and binding proteins, Cations and iron
           carrying compounds, Regulatory functions, DNA
           interactions].
          Length = 130

 Score = 27.4 bits (61), Expect = 1.9
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 53  YTWMDATLRELTNLIREVNPE---AQQRGTCFYFTLLTPERGTSRFHVRDIGQTICGQK- 108
             W D+T++ L  L R V+      ++ G  F +T L  E        +++   IC +K 
Sbjct: 32  KDWSDSTIKTL--LGRLVDKGCLTTEKEGRKFIYTALVSEDEAVENAAQELFSRICSRKV 89

Query: 109 GPDDNKTLQQCRFIIGDYMDV-KILTPKR 136
           G      +++      D   + K+L+ K+
Sbjct: 90  GAVIADLIEESPLSQTDIEKLEKLLSEKK 118


>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like. 
          Length = 111

 Score = 26.1 bits (58), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 104 ICGQKGPDDNKTLQQCRFIIGD 125
           I   K  ++NKTL +CR   G+
Sbjct: 54  INAGKILENNKTLGECRLPAGE 75


>gnl|CDD|182749 PRK10809, PRK10809, ribosomal-protein-S5-alanine
          N-acetyltransferase; Provisional.
          Length = 194

 Score = 26.2 bits (58), Expect = 5.1
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 73 EAQQRGTCFYFTLLTPE----RGTSRF 95
          E  ++G+ FYF LL P+     G + F
Sbjct: 68 EFHKQGSAFYFALLDPDEKEIIGVANF 94


>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
           Provisional.
          Length = 800

 Score = 26.7 bits (59), Expect = 5.3
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 11/33 (33%)

Query: 78  GTCFYFTLLTPERGTSRFHVRDIGQT-ICGQKG 109
           GT FYF           FHVRD+G T I G  G
Sbjct: 434 GTPFYFN----------FHVRDVGHTLIIGPTG 456


>gnl|CDD|222813 PHA00730, int, integrase.
          Length = 337

 Score = 25.9 bits (57), Expect = 9.5
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 60  LRELTNLIREVNPEAQQRGTCFYFTLLTPERGTSR----FHVRDIGQT 103
           L E   ++ E NPE       F    L   RG  +    FH+  + + 
Sbjct: 212 LSEALKVLNEYNPENDICENGFCIYTLNWTRGQKKVFYVFHITPLKKI 259


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,033,941
Number of extensions: 607173
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 17
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)