BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3143
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 119/213 (55%), Gaps = 3/213 (1%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
EE +F + ++ L +A L + PT IQ IP+AL GRDI F L
Sbjct: 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
PIL LL P Q LVL PTREL Q+ + L V+ A+ VGG++ Q
Sbjct: 100 PILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L K P I+IATPGRL+DHL NT F+L ++ LV+DEADR+L+ F +++ +I+++ R
Sbjct: 157 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 216
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300
R+T LFSATMT V L +L PV+ V +
Sbjct: 217 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 121/222 (54%), Gaps = 9/222 (4%)
Query: 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
V E + F LS+ LK + Y T IQ TI +AL G+D+ F+
Sbjct: 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
+P+LE RL + D VL++ PTREL Q ++V R++ + L +GG ++K
Sbjct: 81 VPVLEALYRLQWTSTDGLG--VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK 138
Query: 204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
+ + +I++ TPGRLL H+ T SF +D+++LVLDEADR+LD FA M +I
Sbjct: 139 HEAERINNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE 197
Query: 264 LCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
+ RQT+LFSAT T +V DL +SL P V+V HE A
Sbjct: 198 NLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV---HEKA 236
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 7/209 (3%)
Query: 89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
E++SF + NL + LKAI + + T IQ +I L GRD+ F+
Sbjct: 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 109
Query: 147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
+P +E +L + PR+ T VL+L PTREL +Q + V ++L L +GG
Sbjct: 110 IPAVELIVKLRFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 167
Query: 204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
+ L +I++ATPGRLLDH+ NTP F +++ LV+DEADR+LD F ++K+II+
Sbjct: 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 227
Query: 264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR 292
L RQTMLFSAT T V DL +SL +
Sbjct: 228 LLPTRRQTMLFSATQTRKVEDLARISLKK 256
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 138/252 (54%), Gaps = 9/252 (3%)
Query: 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXX 143
P +S F L LL+AI + +P+ +Q IP A+LG D+
Sbjct: 1 GSPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTA 60
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEV 202
F+L L++L +P Q VLV+ TREL Q+ + + +++ +V+VA+ GGL +
Sbjct: 61 VFVLATLQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSI 117
Query: 203 KVQESVLRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKE 260
K E VL+K CP IV+ TPGR+L L S +L I+ +LDE D+ML++ ++E
Sbjct: 118 KKDEEVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNID 319
I R+ +Q M+FSAT++ + + + P+ +FVD+ ++ L+ L+Q +V + +
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 320 EVR-LYNVLGLM 330
+ R L+++L ++
Sbjct: 237 KNRKLFDLLDVL 248
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 138/252 (54%), Gaps = 9/252 (3%)
Query: 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXX 143
P +S F L LL+AI + +P+ +Q IP A+LG D+
Sbjct: 1 GSPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTA 60
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEV 202
F+L L++L +P Q VLV+ TREL Q+ + + +++ +V+VA+ GGL +
Sbjct: 61 VFVLATLQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSI 117
Query: 203 KVQESVLRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKE 260
K E VL+K CP IV+ TPGR+L L S +L I+ +LDE D+ML++ ++E
Sbjct: 118 KKDEEVLKKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNID 319
I R+ +Q M+FSAT++ + + + P+ +FVD+ ++ L+ L+Q +V + +
Sbjct: 177 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 236
Query: 320 EVR-LYNVLGLM 330
+ R L+++L ++
Sbjct: 237 KNRKLFDLLDVL 248
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 137/245 (55%), Gaps = 9/245 (3%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
S F L LL+AI + +P+ +Q IP A+LG D+ F+L L
Sbjct: 7 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 66
Query: 151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVL 209
++L +P Q VLV+ TREL Q+ + + +++ +V+VA+ GGL +K E VL
Sbjct: 67 QQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 123
Query: 210 RK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSR 267
+K CP IV+ TPGR+L L S +L I+ +LDEAD+ML++ ++EI R+
Sbjct: 124 KKNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPH 182
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LYN 325
+Q M+FSAT++ + + + P+ +FVD+ ++ L+ L+Q +V + ++ R L++
Sbjct: 183 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 242
Query: 326 VLGLM 330
+L ++
Sbjct: 243 LLDVL 247
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 4/208 (1%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
+ ++F L R LL I + P+PIQ IPVA+ GRDI F++P
Sbjct: 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 78
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
LE++ KP+ ++ + L++VPTREL +Q QV R L + + ++ GG ++
Sbjct: 79 TLEKV--KPKLNK-IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 135
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
L + I++ TPGR+LD L + LSD + ++DEAD+ML F + +++I+ T
Sbjct: 136 LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 194
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRV 296
Q++LFSAT V + + L +P +
Sbjct: 195 HQSLLFSATFPLTVKEFMVKHLHKPYEI 222
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 11/210 (5%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F L +L+A+ PTPIQAA +P+AL G+D+ F LPI ER
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV----GGLEVKVQESV 208
L + R LVL PTREL +QV ++ T+V L V GG Q+
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVA------SELTAVAPHLKVVAVYGGTGYGKQKEA 116
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
L + D V+ATPGR LD+L LS +EV VLDEAD ML F +++ ++ +
Sbjct: 117 LLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
RQT+LFSAT+ L + PV + V
Sbjct: 176 RQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 5/209 (2%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
+ + F L R LL I + + P+PIQ +IP+AL GRDI +++P
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQES 207
+LERL K N + +V+VPTREL +QV Q+ Q+++ +V + GG ++
Sbjct: 61 LLERLDLK---KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L +VIATPGR+LD + + + ++++VLDEAD++L + F M++II +
Sbjct: 118 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
RQ +L+SAT +V ++ L +P +
Sbjct: 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 104/210 (49%), Gaps = 11/210 (5%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F L +L+A+ PTPI+AA +P+AL G+D+ F LPI ER
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV----GGLEVKVQESV 208
L + R LVL PTREL +QV ++ T+V L V GG Q+
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVA------SELTAVAPHLKVVAVYGGTGYGKQKEA 116
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
L + D V+ATPGR LD+L LS +EV VLDEAD ML F +++ ++ +
Sbjct: 117 LLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
RQT+LFSAT+ L + PV + V
Sbjct: 176 RQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 7/200 (3%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F +L ++ + Y PTPIQ +IPV GRD+ F+LPIL +
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 117
Query: 153 LLYKPRDDQNTR--VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ-ESVL 209
LL P + + R V+++ PTREL +Q++ R+ A + +++ + GG + Q E +
Sbjct: 118 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR-- 267
R C +VIATPGRLLD + T + D +VLDEADRMLD F+ M+ I+ +
Sbjct: 178 RGC-HVVIATPGRLLDFVDRT-FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 235
Query: 268 TRQTMLFSATMTDAVNDLVS 287
QT++FSAT + + +
Sbjct: 236 EHQTLMFSATFPEEIQRMAG 255
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
+S F L LL+AI + +P+ +Q IP A+LG D+ F+L
Sbjct: 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 72
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
L++L +P Q VLV+ TREL Q+ + + +++ +V+VA+ GGL +K E V
Sbjct: 73 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 129
Query: 209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
L+K CP IV+ TPGR+L L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 130 LKKNCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 188
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+Q M+FSAT++ + + + P+ +FV
Sbjct: 189 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 5/224 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
SF MNLS LL+ I A + P+ IQ I + G D+ F + IL+
Sbjct: 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 100
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR- 210
++ D + T+ LVL PTREL Q+ +V L + +GG V+ + L+
Sbjct: 101 QI---ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 157
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ P I++ TPGR+ D L N S I++ VLDEAD ML F Q+ +I + + Q
Sbjct: 158 EAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
+L SATM V ++ + P+R+ V +RQ +++
Sbjct: 217 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 5/224 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
SF MNLS LL+ I A + P+ IQ I + G D+ F + IL+
Sbjct: 15 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 74
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR- 210
++ D + T+ LVL PTREL Q+ +V L + +GG V+ + L+
Sbjct: 75 QI---ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 131
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ P I++ TPGR+ D L N S I++ VLDEAD ML F Q+ +I + + Q
Sbjct: 132 EAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 190
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
+L SATM V ++ + P+R+ V +RQ +++
Sbjct: 191 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 234
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 100/208 (48%), Gaps = 5/208 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
SF MNLS LL+ I A + P+ IQ I + G D+ F + IL+
Sbjct: 16 SFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQ 75
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR- 210
++ D T+ LVL PTREL Q+ V L + +GG V+ + L+
Sbjct: 76 QI---ELDLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQM 132
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ P I++ TPGR+ D L N S I + VLDEAD ML F Q+ +I + + Q
Sbjct: 133 EAPHIIVGTPGRVFDML-NRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQ 191
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+L SATM V ++ + P+R+ V
Sbjct: 192 VVLLSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 5/198 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
+F++ N ++ I N+ PT IQA PVAL G D+ ++LP +
Sbjct: 44 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 103
Query: 152 RLLYKP---RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
+ ++P R D LVL PTREL QV QV + + ++ GG Q
Sbjct: 104 HINHQPFLERGD-GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 162
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
L + +I IATPGRL+D L + +L LVLDEADRMLD F Q+++I+
Sbjct: 163 LERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 221
Query: 269 RQTMLFSATMTDAVNDLV 286
RQT+++SAT V L
Sbjct: 222 RQTLMWSATWPKEVRQLA 239
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
+F MNL LL+ I A + P+ IQ I + G D+ F + IL+
Sbjct: 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 90
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR- 210
+L + ++ T+ LVL PTREL Q+ +V L + +GG V+ + L+
Sbjct: 91 QLEIEFKE---TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 147
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ P IV+ TPGR+ D L N S I++ VLDEAD ML F Q+ EI + + + Q
Sbjct: 148 EAPHIVVGTPGRVFDML-NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+L SATM V ++ + P+R+ V
Sbjct: 207 VVLLSATMPTDVLEVTKKFMRDPIRILV 234
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 4/228 (1%)
Query: 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
V+ +F M L LL+ I A + P+ IQ I + GRD+ F
Sbjct: 12 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 71
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
+ +L+ L + R+ T+ L+L PTREL VQ+ + L + +V+ +GG V
Sbjct: 72 ISVLQCLDIQVRE---TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 128
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L +V TPGR+ D + S I++LVLDEAD ML++ F Q+ ++ R
Sbjct: 129 RKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 187
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
Q +L SAT+ + ++ + +T P+R+ V + ++Q FV+
Sbjct: 188 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 235
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 4/228 (1%)
Query: 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
V+ +F M L LL+ I A + P+ IQ I + GRD+ F
Sbjct: 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
+ +L+ L + R+ T+ L+L PTREL VQ+ + L + +V+ +GG V
Sbjct: 93 ISVLQCLDIQVRE---TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 149
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L +V TPGR+ D + S I++LVLDEAD ML++ F Q+ ++ R
Sbjct: 150 RKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 208
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
Q +L SAT+ + ++ + +T P+R+ V + ++Q FV+
Sbjct: 209 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 256
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 4/223 (1%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
+F M L LL+ I A + P+ IQ I + GRD+ F + +L+
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
L + R+ T+ L+L PTREL VQV + L + +V+ +GG V L
Sbjct: 62 CLDIQVRE---TQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 118
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
+V TPGR+ D + S I++LVLDEAD ML++ F Q+ ++ R Q
Sbjct: 119 GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
+L SAT+ + ++ + +T P+R+ V + ++Q FV+
Sbjct: 178 VLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 220
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 4/228 (1%)
Query: 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
V+ +F M L LL+ I A + P+ IQ I + GRD+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
+ +L+ L + R+ T+ L+L PTREL VQ+ + L + +V+ +GG V
Sbjct: 94 ISVLQCLDIQVRE---TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 150
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L +V TPGR+ D + S I++LVLDEAD ML++ F Q+ ++ R
Sbjct: 151 RKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
Q +L SAT+ + ++ + +T P+R+ V + ++Q FV+
Sbjct: 210 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 257
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 4/223 (1%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
+F M L LL+ I A + P+ IQ I + GRD+ F + +L+
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
L + R+ T+ L+L PTREL VQV + L + +V+ +GG V L
Sbjct: 62 CLDIQVRE---TQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDY 118
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
+V TPGR+ D + S I++LVLDEAD ML++ F Q+ ++ R Q
Sbjct: 119 GQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
+L SAT+ V ++ + +T P+R+ V + ++Q FV+
Sbjct: 178 VLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 220
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 5/198 (2%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
+F++ N ++ I N+ PT IQA PVAL G D+ ++LP +
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 89
Query: 152 RLLYKP---RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
+ ++P R D LVL PTREL QV QV + + ++ GG Q
Sbjct: 90 HINHQPFLERGD-GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 148
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
L + +I IATPGRL+D L + +L LVLDEADRMLD F Q+++I+
Sbjct: 149 LERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 207
Query: 269 RQTMLFSATMTDAVNDLV 286
RQT+++SAT V L
Sbjct: 208 RQTLMWSATWPKEVRQLA 225
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 4/228 (1%)
Query: 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
V+ +F M L LL+ I A + P+ IQ I + GRD+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
+ +L+ L + R+ T+ L+L PTREL VQ+ + L + +V+ +GG V
Sbjct: 94 ISVLQCLDIQVRE---TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 150
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L +V TPGR+ D + S I++LVLDEAD ML++ F Q+ ++ R
Sbjct: 151 RKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
Q +L SAT+ + ++ + +T P+R+ V + ++Q FV+
Sbjct: 210 PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVA 257
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 7/190 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DIXXXXXXXXXXXXXFML 147
E +F+++NLS +L AI + PT IQ IP+ L +I F +
Sbjct: 4 EYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAI 63
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
P++E + ++ ++L PTREL +QV L ++++A GG + Q
Sbjct: 64 PLIELV----NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 119
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L K +IV+ TPGR+LDH+ N + +L +++ +LDEAD L+ F +++I+ C++
Sbjct: 120 AL-KNANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNK 177
Query: 268 TRQTMLFSAT 277
++ +LFSAT
Sbjct: 178 DKRILLFSAT 187
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 22/257 (8%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
+ PP E SF + + ++ I Y PTP+Q IP+ RD+
Sbjct: 9 NCPPHIE--SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 66
Query: 143 XXFMLPILERLLYKPRDD------QNTRV---------LVLVPTRELGVQVYQVTRQLAQ 187
F+LPIL ++ + +N R LVL PTREL VQ+Y+ R+ +
Sbjct: 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 126
Query: 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247
+ V + GG ++ Q L + +++ATPGRL+D + L + LVLDEAD
Sbjct: 127 RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-KIGLDFCKYLVLDEAD 185
Query: 248 RMLDEHFASQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303
RMLD F Q++ I+ + R TM+FSAT + L L + + V
Sbjct: 186 RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS 245
Query: 304 VALNLRQEFVSFSNIDE 320
+ N+ Q+ V D+
Sbjct: 246 TSENITQKVVWVEESDK 262
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 11/230 (4%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
+F ++ L + I +Y PTPIQ IP L RDI F++PI+
Sbjct: 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 152 RLLYKPRDDQNT------RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205
L+ + + Q + L+L PTREL +Q+ +++ + T + + GG + Q
Sbjct: 84 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 143
Query: 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
++ +++ATPGRL+D + SL + +VLDEADRMLD F Q+++II
Sbjct: 144 IREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 202
Query: 266 SR----TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQE 311
+ RQT++FSAT + L + L + + V + +++QE
Sbjct: 203 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 11/194 (5%)
Query: 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKP 157
++ + +AI + + T +Q+ TIP+ L G+++ + +PILE
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------ 54
Query: 158 RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVI 217
+ LV+ PTREL QV R + ++ +VA GG+ K Q + +R DIV+
Sbjct: 55 ---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNA-DIVV 110
Query: 218 ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
ATPGRLLD L + LS E++++DEAD M + F +K I+ S + T LFSAT
Sbjct: 111 ATPGRLLD-LWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSAT 169
Query: 278 MTDAVNDLVSVSLT 291
+ + + +V +T
Sbjct: 170 IPEEIRKVVKDFIT 183
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 5/200 (2%)
Query: 102 LLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKP--RD 159
LLK+I + + PTPIQ+ P+ L G D+ +++P L +P R+
Sbjct: 31 LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90
Query: 160 DQNT-RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIA 218
+N +LVL PTREL + V + + + ++ GG Q + K DI+IA
Sbjct: 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIA 149
Query: 219 TPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM 278
TPGRL D N S +L I LV+DEAD+MLD F Q+++I+ RQT++ SAT
Sbjct: 150 TPGRLNDLQMNN-SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208
Query: 279 TDAVNDLVSVSLTRPVRVFV 298
D V L L P+ V+V
Sbjct: 209 PDTVRQLALSYLKDPMIVYV 228
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F M L LL+ + + P+ IQ I + G D+ F + L+R
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
+ + Q L+L PTREL +Q+ +V LA ++V +GG LR
Sbjct: 84 IDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA 140
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I L T Q +
Sbjct: 141 -QIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 198
Query: 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
L SATM + V ++ + + PVR+ V + ++Q +V N++E
Sbjct: 199 LLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYV---NVEE 243
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F M L LL+ + + P+ IQ I + G D+ F + L+R
Sbjct: 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
+ + Q L+L PTREL +Q+ +V LA ++V +GG LR
Sbjct: 76 IDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA 132
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I L T Q +
Sbjct: 133 -QIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 190
Query: 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302
L SATM + V ++ + + PVR+ V +
Sbjct: 191 LLSATMPNDVLEVTTKFMRNPVRILVKKDE 220
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 5/206 (2%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F M L LL+ + + P+ IQ I + G D+ F + L+R
Sbjct: 23 FDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
+ + Q L+L PTREL +Q+ +V LA ++V +GG LR
Sbjct: 83 IDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA 139
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I L T Q +
Sbjct: 140 -QIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 197
Query: 273 LFSATMTDAVNDLVSVSLTRPVRVFV 298
L SATM + V ++ + + PVR+ V
Sbjct: 198 LLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
F L LL+ + + P+ IQ I + G D+ F + L+R
Sbjct: 23 FDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
+ + Q L L PTREL +Q+ +V LA ++V +GG LR
Sbjct: 83 IDTSVKAPQ---ALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA 139
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
IV+ TPGR+ D++ F I+ +LDEAD L F Q+ +I L T Q +
Sbjct: 140 -QIVVGTPGRVFDNIQRR-RFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVV 197
Query: 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
L SAT + V ++ + PVR+ V + ++Q +V N++E
Sbjct: 198 LLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYV---NVEE 242
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
E + F + LSRP+L+ + A + P+P+Q IP+ G D+ F
Sbjct: 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTI 81
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA-QFTSVEVALSVGGLEVKVQES 207
L+ L+ ++ +T++L+L PTRE+ VQ++ V + + +E + +GG + ++
Sbjct: 82 ALDSLVL---ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138
Query: 208 VLRKCPDIVIATPGRL-----LDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEI 261
L+KC I + +PGR+ LD+L+ I + +LDEAD++L+E F Q+ I
Sbjct: 139 RLKKC-HIAVGSPGRIKQLIELDYLNP------GSIRLFILDEADKLLEEGSFQEQINWI 191
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
++Q + SAT + + + ++ + P V
Sbjct: 192 YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 8/213 (3%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
+ F + +++AI L + PT IQ IP AL G ++LPI
Sbjct: 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPI 62
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS----VGGLEVKVQ 205
E++ KP + + ++ PTREL Q+Y T ++ +F + + +GG + +
Sbjct: 63 XEKI--KP-ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKA 119
Query: 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
L P IVI TPGR+ D + + + +LV+DEAD LD F + + +I
Sbjct: 120 LEKLNVQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDEADLXLDXGFITDVDQIAARX 178
Query: 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+ Q ++FSAT+ + + + P V V
Sbjct: 179 PKDLQXLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 13/201 (6%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXX 143
P+ SF ++ L+ LLK I A+ + P+ IQ +P+ L R++
Sbjct: 17 PLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTA 76
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV-GGLEV 202
F L +L R+ P +D + + + L P+REL Q +V +++ +FT + L V E
Sbjct: 77 AFSLTMLTRV--NP-EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK 133
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEI 261
Q + +++ TPG +LD L L I++ VLDEAD MLD+ Q +
Sbjct: 134 NKQINA-----QVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 187
Query: 262 IRLCSRTRQTMLFSATMTDAV 282
R + Q +LFSAT DAV
Sbjct: 188 KRFLPKDTQLVLFSATFADAV 208
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXXXFMLPI 149
SF ++ L+ LLK I A+ + P+ IQ +P+ L R++ F L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV-GGLEVKVQESV 208
L R+ P +D + + + L P+REL Q +V +++ +FT + L V E Q +
Sbjct: 66 LTRV--NP-EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINA 122
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSR 267
+++ TPG +LD L L I++ VLDEAD MLD+ Q + R +
Sbjct: 123 -----QVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176
Query: 268 TRQTMLFSATMTDAV 282
Q +LFSAT DAV
Sbjct: 177 DTQLVLFSATFADAV 191
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXXXFMLPI 149
SF ++ L+ LLK I A+ + P+ IQ +P+ L R++ F L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV-GGLEVKVQESV 208
L R+ P +D + + + L P+REL Q +V +++ +FT + L V E Q +
Sbjct: 66 LTRV--NP-EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINA 122
Query: 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSR 267
+++ TPG +LD L L I++ VLDEAD MLD+ Q + R +
Sbjct: 123 -----QVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176
Query: 268 TRQTMLFSATMTDAV 282
Q +LFSAT DAV
Sbjct: 177 DTQLVLFSATFADAV 191
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXXXFMLPILERLLY 155
L + + KAI + + TP+Q TI L D+ F++PI + L+
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 156 KPRDDQN-TRVLVLVPTRELGVQV-------YQVTRQLAQFTSVEVALSVGGLEVKVQES 207
D Q + +++ PTR+L +Q+ + + L ++ V + VGG + + +
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL---VGGTDFRAAMN 144
Query: 208 VLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
+ K P+IVIATPGRL+D L + ++ VLDEADR+L+ F ++ I + +
Sbjct: 145 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 204
Query: 267 RTR-------QTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299
+T+LFSAT+ D V L + + + +F+D
Sbjct: 205 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXXXFMLPILERLLY 155
L + + KAI + + TP+Q TI L D+ F++PI + L+
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 156 KPRDDQN-TRVLVLVPTRELGVQV-------YQVTRQLAQFTSVEVALSVGGLEVKVQES 207
D Q + +++ PTR+L +Q+ + + L ++ V + VGG + + +
Sbjct: 139 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL---VGGTDFRAAMN 195
Query: 208 VLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
+ K P+IVIATPGRL+D L + ++ VLDEADR+L+ F ++ I + +
Sbjct: 196 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 255
Query: 267 RTR-------QTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299
+T+LFSAT+ D V L + + + +F+D
Sbjct: 256 EKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 295
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 28/239 (11%)
Query: 86 PVEENSS-------FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRD--IXXXXX 136
P E+NS + L + + KAI + + TP+Q TI L D +
Sbjct: 9 PKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAK 68
Query: 137 XXXXXXXXFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQV-------YQVTRQLAQF 188
F++PI + L+ D Q + +++ PTR+L +Q+ + + L ++
Sbjct: 69 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 128
Query: 189 TSVEVALSVGGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247
V + VGG + + + + K P+IVIATPGRL+D L + ++ VLDEAD
Sbjct: 129 ACVSL---VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185
Query: 248 RMLDEHFASQMKEIIRLCSRTR-------QTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299
R+L+ F ++ I + + +T+LFSAT+ D V L + + + +F+D
Sbjct: 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 10/239 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXX 143
P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++
Sbjct: 36 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 95
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEV 202
F+L +L ++ +P + + + L L PT EL +Q +V Q+ +F +++A +V G ++
Sbjct: 96 AFVLAMLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 152
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEI 261
+ + + + IVI TPG +LD I+V VLDEAD M+ + Q I
Sbjct: 153 ERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 209
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
R+ R Q +LFSAT D+V + P + + E ++Q +V S+ DE
Sbjct: 210 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 268
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 10/239 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXX 143
P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEV 202
F+L +L ++ +P + + + L L PT EL +Q +V Q+ +F +++A +V G ++
Sbjct: 80 AFVLAMLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEI 261
+ + + + IVI TPG +LD I+V VLDEAD M+ + Q I
Sbjct: 137 ERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
R+ R Q +LFSAT D+V + P + + E ++Q +V S+ DE
Sbjct: 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 10/239 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXX 143
P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++
Sbjct: 57 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 116
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEV 202
F+L +L ++ +P + + + L L PT EL +Q +V Q+ +F +++A +V G ++
Sbjct: 117 AFVLAMLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 173
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEI 261
+ + + + IVI TPG +LD I+V VLDEAD M+ + Q I
Sbjct: 174 ERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 230
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
R+ R Q +LFSAT D+V + P + + E ++Q +V S+ DE
Sbjct: 231 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 289
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 91 SSFHQMN----LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
++F Q++ ++ LL+ I + PTPIQ IPV L GR++ F
Sbjct: 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFS 84
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL----SVGGLEV 202
+PIL +L K ++ R L++ PTREL Q+++ ++++ T + + +V +
Sbjct: 85 IPILMQL--KQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF 142
Query: 203 KVQESVLRKCPDIVIATPGRLLDHL-HNTPSFSLSDIEVLVLDEADRMLDE---HFASQM 258
+ S K DI++ TP RL+ L + P L+ +E LV+DE+D++ ++ F Q+
Sbjct: 143 GPKSS---KKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQL 199
Query: 259 KEIIRLCS--RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
I C+ + R+ M FSAT V ++L + V +
Sbjct: 200 ASIFLACTSHKVRRAM-FSATFAYDVEQWCKLNLDNVISVSI 240
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 10/239 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXX 143
P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEV 202
F+L +L ++ +P + + + L L PT EL +Q +V Q+ +F +++A +V G ++
Sbjct: 147 AFVLAMLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEI 261
+ + + + IVI TPG +LD I+V VLDEAD M+ + Q I
Sbjct: 204 ERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
R+ R Q +LFSAT D+V + P + + E ++Q +V S+ DE
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 319
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALL--GRDIXXXXXXXXXXXX 143
P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEV 202
F+L +L ++ +P + + + L L PT EL +Q +V Q+ +F +++A +V G ++
Sbjct: 80 AFVLAMLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 136
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEI 261
+ + + + IVI TPG +LD I+V VLDEAD M+ + Q I
Sbjct: 137 ERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193
Query: 262 IRLCSRTRQTMLFSATMTDAV 282
R+ R Q +LFSAT D+V
Sbjct: 194 QRMLPRNCQMLLFSATFEDSV 214
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDIXXXXXXXXXXXX 143
P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEV 202
F+L +L ++ +P + + + L L PT EL +Q +V Q+ +F +++A +V G ++
Sbjct: 147 AFVLAMLSQV--EPAN-KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEI 261
+ + + + IVI TPG +LD I+V VLDEAD M+ + Q I
Sbjct: 204 ERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260
Query: 262 IRLCSRTRQTMLFSATMTDAV 282
R+ R Q +LFSAT D+V
Sbjct: 261 QRMLPRNCQMLLFSATFEDSV 281
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 30/176 (17%)
Query: 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC---PDIVIATP 220
+ + L P+REL Q+ V ++ ++T V+ A + ++SV + IVI TP
Sbjct: 191 QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI-------KDSVPKGAKIDAQIVIGTP 243
Query: 221 GRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT 279
G ++D L DI+V VLDEAD MLD+ Q I L R Q +LFSAT +
Sbjct: 244 GTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 302
Query: 280 DAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL--------YNVL 327
+ V + F N +E+ L+ E +S I ++ + YNVL
Sbjct: 303 ERVE--------KYAERFAPNANEI--RLKTEELSVEGIKQLYMDCQSEEHKYNVL 348
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251
C D VIA G LLD L +F LS +++ + E+DR D
Sbjct: 426 CGDRVIAD-GSLLDFLRQVSTFGLSLVKLDIRQESDRHTD 464
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGL----EVKVQESVLRKCPDIVIATPGRL 223
+VPT L +Q Y+ T + ++ VAL +G + K++ + D+VI T +
Sbjct: 423 MVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI 482
Query: 224 LDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
+ +H ++ ++++DE R F + +E + + T++ SAT
Sbjct: 483 QEDVH------FKNLGLVIIDEQHR-----FGVKQREALMNKGKMVDTLVMSAT 525
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248
C D VIA G LLD L +F LS +++ + E+DR
Sbjct: 444 CGDHVIAD-GSLLDFLRQVSTFGLSLVKLDIRQESDR 479
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,118,779
Number of Sequences: 62578
Number of extensions: 231612
Number of successful extensions: 646
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 58
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)