Query psy3143
Match_columns 337
No_of_seqs 269 out of 2926
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 17:33:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338|consensus 100.0 3.6E-56 7.8E-61 399.0 18.1 243 90-332 180-422 (691)
2 KOG0330|consensus 100.0 3.2E-50 6.8E-55 350.6 19.3 242 88-332 58-300 (476)
3 COG0513 SrmB Superfamily II DN 100.0 3.7E-45 8E-50 349.4 28.9 239 91-333 29-270 (513)
4 KOG0331|consensus 100.0 1.4E-45 3.1E-50 340.2 21.1 237 92-332 92-334 (519)
5 KOG0343|consensus 100.0 3.5E-45 7.5E-50 331.2 19.9 238 90-331 68-308 (758)
6 KOG0345|consensus 100.0 5.4E-44 1.2E-48 318.2 24.0 244 91-337 4-259 (567)
7 KOG0346|consensus 100.0 4.2E-44 9.1E-49 316.5 19.8 238 91-331 19-262 (569)
8 KOG0328|consensus 100.0 8.6E-44 1.9E-48 298.5 17.3 246 81-332 17-262 (400)
9 KOG0342|consensus 100.0 5.5E-43 1.2E-47 313.6 21.3 240 89-331 80-324 (543)
10 PRK04837 ATP-dependent RNA hel 100.0 1.1E-40 2.5E-45 314.1 30.0 240 90-333 7-252 (423)
11 PTZ00110 helicase; Provisional 100.0 8.7E-41 1.9E-45 322.1 29.5 240 88-331 127-370 (545)
12 KOG0339|consensus 100.0 1.6E-41 3.5E-46 304.7 21.0 241 85-328 217-459 (731)
13 KOG0348|consensus 100.0 7E-42 1.5E-46 308.8 17.4 242 88-332 133-417 (708)
14 PRK10590 ATP-dependent RNA hel 100.0 3.1E-40 6.7E-45 313.4 29.0 239 92-334 2-243 (456)
15 PLN00206 DEAD-box ATP-dependen 100.0 3.6E-40 7.9E-45 316.8 29.3 240 88-332 118-361 (518)
16 PRK04537 ATP-dependent RNA hel 100.0 2.8E-40 6.1E-45 319.7 28.5 240 91-333 9-254 (572)
17 PRK11776 ATP-dependent RNA hel 100.0 4.8E-40 1E-44 313.1 29.2 235 90-332 3-238 (460)
18 PRK11634 ATP-dependent RNA hel 100.0 5.8E-40 1.3E-44 319.4 29.0 236 90-332 5-241 (629)
19 KOG0340|consensus 100.0 5.6E-41 1.2E-45 289.6 17.7 238 89-332 5-247 (442)
20 PRK11192 ATP-dependent RNA hel 100.0 3E-39 6.5E-44 305.7 30.1 239 92-333 2-242 (434)
21 KOG0336|consensus 100.0 1.9E-40 4.1E-45 291.1 17.4 242 86-332 214-460 (629)
22 KOG0333|consensus 100.0 1.3E-39 2.8E-44 293.7 20.9 244 86-333 240-514 (673)
23 KOG0326|consensus 100.0 6.7E-41 1.5E-45 285.5 11.2 236 90-333 84-319 (459)
24 KOG0335|consensus 100.0 4.3E-40 9.2E-45 299.2 17.1 238 91-332 74-324 (482)
25 KOG0337|consensus 100.0 3.8E-40 8.3E-45 290.1 15.8 238 90-333 20-257 (529)
26 PRK01297 ATP-dependent RNA hel 100.0 7.9E-38 1.7E-42 298.7 29.5 244 86-333 82-332 (475)
27 KOG0347|consensus 100.0 8.4E-40 1.8E-44 296.2 12.4 219 88-306 178-437 (731)
28 KOG0334|consensus 100.0 5.4E-39 1.2E-43 311.0 17.8 244 87-332 361-608 (997)
29 KOG0332|consensus 100.0 3.9E-38 8.5E-43 273.6 15.5 243 82-332 81-326 (477)
30 PTZ00424 helicase 45; Provisio 100.0 3.4E-36 7.3E-41 282.5 29.1 237 90-332 27-263 (401)
31 KOG0341|consensus 100.0 2.5E-39 5.5E-44 282.3 5.5 240 88-331 167-417 (610)
32 KOG0327|consensus 100.0 2.2E-37 4.7E-42 270.7 15.2 236 90-332 25-261 (397)
33 KOG0329|consensus 100.0 1.9E-37 4.2E-42 257.0 12.1 239 89-331 40-281 (387)
34 cd00268 DEADc DEAD-box helicas 100.0 1.7E-34 3.8E-39 245.9 25.1 203 93-297 1-203 (203)
35 KOG4284|consensus 100.0 4.2E-36 9.1E-41 276.5 16.0 240 89-333 23-269 (980)
36 KOG0350|consensus 100.0 2.3E-35 4.9E-40 264.9 16.0 226 91-318 127-414 (620)
37 TIGR03817 DECH_helic helicase/ 100.0 5.6E-31 1.2E-35 261.2 28.4 193 97-297 20-222 (742)
38 KOG0344|consensus 100.0 9.4E-31 2E-35 240.1 14.6 243 90-334 131-385 (593)
39 PF00270 DEAD: DEAD/DEAH box h 100.0 6.1E-29 1.3E-33 205.3 19.6 165 115-284 1-168 (169)
40 PRK00254 ski2-like helicase; P 100.0 2.8E-28 6E-33 243.4 22.7 188 92-291 2-190 (720)
41 PRK02362 ski2-like helicase; P 100.0 1.3E-28 2.8E-33 246.3 19.0 178 92-280 2-183 (737)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.1E-28 1.8E-32 235.5 23.9 191 109-311 12-248 (844)
43 PRK09401 reverse gyrase; Revie 100.0 1.2E-27 2.7E-32 245.3 24.7 200 104-316 71-314 (1176)
44 PRK13767 ATP-dependent helicas 100.0 8.2E-27 1.8E-31 235.9 24.5 181 98-280 18-219 (876)
45 PRK14701 reverse gyrase; Provi 99.9 1.9E-26 4.1E-31 241.4 24.5 205 101-317 67-316 (1638)
46 TIGR00580 mfd transcription-re 99.9 7.8E-26 1.7E-30 227.1 25.3 216 98-335 436-662 (926)
47 PRK10689 transcription-repair 99.9 1E-25 2.2E-30 230.8 25.4 215 100-336 587-812 (1147)
48 COG1201 Lhr Lhr-like helicases 99.9 2.8E-26 6.2E-31 223.6 19.7 181 98-281 8-196 (814)
49 PRK01172 ski2-like helicase; P 99.9 1.9E-26 4.2E-31 229.1 18.6 178 92-281 2-182 (674)
50 TIGR01054 rgy reverse gyrase. 99.9 9.3E-26 2E-30 231.8 23.4 204 101-317 66-313 (1171)
51 TIGR00614 recQ_fam ATP-depende 99.9 3.2E-25 6.9E-30 211.4 21.8 178 108-298 6-194 (470)
52 PLN03137 ATP-dependent DNA hel 99.9 6.6E-25 1.4E-29 218.5 24.4 190 95-297 441-647 (1195)
53 PRK10917 ATP-dependent DNA hel 99.9 4.5E-24 9.7E-29 211.1 24.8 170 100-287 248-428 (681)
54 COG1205 Distinct helicase fami 99.9 1.3E-23 2.8E-28 209.8 24.7 188 98-289 55-253 (851)
55 PRK11057 ATP-dependent DNA hel 99.9 3.1E-23 6.8E-28 203.0 23.4 183 100-297 11-205 (607)
56 TIGR00643 recG ATP-dependent D 99.9 4.3E-23 9.4E-28 202.8 22.8 166 103-285 226-403 (630)
57 PHA02653 RNA helicase NPH-II; 99.9 2.3E-23 5E-28 202.8 20.6 187 115-315 166-365 (675)
58 TIGR01389 recQ ATP-dependent D 99.9 3.6E-23 7.7E-28 202.8 22.0 174 109-297 9-193 (591)
59 PRK09751 putative ATP-dependen 99.9 3.4E-23 7.3E-28 213.9 22.2 164 133-298 1-189 (1490)
60 smart00487 DEXDc DEAD-like hel 99.9 8.6E-22 1.9E-26 166.0 22.0 188 108-300 3-192 (201)
61 PRK11664 ATP-dependent RNA hel 99.9 3.2E-22 6.9E-27 199.6 21.7 183 116-318 8-193 (812)
62 KOG0349|consensus 99.9 1.3E-23 2.8E-28 186.6 10.4 169 162-332 286-464 (725)
63 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4.7E-22 1E-26 198.0 22.5 182 116-317 5-189 (819)
64 PRK12899 secA preprotein trans 99.9 8.3E-23 1.8E-27 199.9 16.2 148 94-250 65-228 (970)
65 COG1204 Superfamily II helicas 99.9 2.7E-22 5.7E-27 197.9 19.4 175 97-281 15-193 (766)
66 KOG0952|consensus 99.9 6.5E-21 1.4E-25 185.0 17.4 205 108-318 105-325 (1230)
67 TIGR03158 cas3_cyano CRISPR-as 99.9 6.2E-20 1.3E-24 168.8 22.8 171 117-296 1-211 (357)
68 COG1202 Superfamily II helicas 99.9 1.3E-20 2.8E-25 172.9 16.9 228 91-333 194-429 (830)
69 COG1111 MPH1 ERCC4-like helica 99.9 8.9E-20 1.9E-24 165.9 21.5 212 111-331 13-232 (542)
70 PHA02558 uvsW UvsW helicase; P 99.9 9.3E-21 2E-25 181.8 16.1 151 111-281 112-262 (501)
71 KOG0354|consensus 99.9 1.2E-20 2.6E-25 180.6 15.7 181 98-285 47-228 (746)
72 TIGR01587 cas3_core CRISPR-ass 99.8 2.8E-20 6.1E-25 172.0 16.1 154 130-291 1-178 (358)
73 PRK13766 Hef nuclease; Provisi 99.8 6.2E-19 1.3E-23 178.4 23.0 164 110-281 12-175 (773)
74 PRK12898 secA preprotein trans 99.8 1.6E-18 3.5E-23 166.9 21.2 131 110-250 100-255 (656)
75 PRK05580 primosome assembly pr 99.8 3.1E-18 6.8E-23 169.2 21.7 157 113-286 144-312 (679)
76 KOG0947|consensus 99.8 3.1E-19 6.7E-24 171.8 12.0 186 112-316 296-481 (1248)
77 COG4581 Superfamily II RNA hel 99.8 1.6E-18 3.5E-23 172.1 17.2 188 109-313 116-305 (1041)
78 cd00046 DEXDc DEAD-like helica 99.8 1.1E-17 2.5E-22 132.7 17.4 144 129-278 1-144 (144)
79 TIGR00963 secA preprotein tran 99.8 3.1E-18 6.6E-23 166.0 13.8 131 111-251 54-190 (745)
80 PRK09200 preprotein translocas 99.8 6.8E-18 1.5E-22 165.9 15.2 131 110-250 76-212 (790)
81 PRK11131 ATP-dependent RNA hel 99.8 5E-17 1.1E-21 166.0 20.9 180 115-317 76-261 (1294)
82 COG1197 Mfd Transcription-repa 99.8 7.3E-17 1.6E-21 160.7 21.5 219 97-336 578-806 (1139)
83 COG0514 RecQ Superfamily II DN 99.8 1.1E-17 2.4E-22 158.4 14.9 179 104-297 7-197 (590)
84 TIGR03714 secA2 accessory Sec 99.8 9.3E-18 2E-22 163.6 13.2 130 113-250 70-208 (762)
85 PRK13104 secA preprotein trans 99.7 3.3E-17 7.1E-22 161.1 15.1 129 112-250 81-215 (896)
86 KOG0951|consensus 99.7 5.2E-17 1.1E-21 160.3 15.4 225 98-330 296-535 (1674)
87 KOG0352|consensus 99.7 4.6E-17 1E-21 145.0 12.4 185 101-300 6-210 (641)
88 PRK09694 helicase Cas3; Provis 99.7 2.5E-16 5.3E-21 157.5 16.8 171 111-286 284-488 (878)
89 PF04851 ResIII: Type III rest 99.7 1.2E-16 2.7E-21 133.2 12.2 152 113-279 3-183 (184)
90 TIGR00595 priA primosomal prot 99.7 1.6E-15 3.6E-20 144.9 19.7 138 132-286 1-147 (505)
91 TIGR01967 DEAH_box_HrpA ATP-de 99.7 1.6E-15 3.4E-20 155.6 19.5 179 118-316 72-253 (1283)
92 KOG0926|consensus 99.7 5.4E-16 1.2E-20 147.4 14.8 155 116-279 259-425 (1172)
93 COG1200 RecG RecG-like helicas 99.7 9.1E-15 2E-19 138.7 21.6 174 96-286 245-429 (677)
94 KOG0351|consensus 99.6 1.5E-15 3.3E-20 151.7 13.7 184 102-298 252-452 (941)
95 COG1061 SSL2 DNA or RNA helica 99.6 1.8E-15 3.9E-20 142.8 13.2 147 112-280 35-185 (442)
96 PRK12904 preprotein translocas 99.6 3.9E-15 8.5E-20 146.4 13.7 128 112-250 80-214 (830)
97 TIGR00603 rad25 DNA repair hel 99.6 5E-15 1.1E-19 144.6 14.1 150 112-280 254-413 (732)
98 KOG0353|consensus 99.6 1.1E-13 2.3E-18 122.1 19.4 184 92-288 72-270 (695)
99 COG1643 HrpA HrpA-like helicas 99.6 2.2E-14 4.8E-19 141.8 17.0 179 115-312 52-233 (845)
100 KOG0948|consensus 99.6 3.6E-15 7.9E-20 141.0 10.1 168 113-298 129-298 (1041)
101 KOG0920|consensus 99.6 6.3E-14 1.4E-18 138.4 18.5 186 102-301 162-349 (924)
102 COG1110 Reverse gyrase [DNA re 99.6 5.4E-14 1.2E-18 137.5 17.5 219 102-336 71-339 (1187)
103 COG4098 comFA Superfamily II D 99.6 1E-13 2.2E-18 120.8 16.8 181 113-318 97-281 (441)
104 KOG0922|consensus 99.6 6.2E-14 1.3E-18 132.0 15.7 169 115-300 53-224 (674)
105 PRK11448 hsdR type I restricti 99.6 6.2E-14 1.3E-18 144.2 15.6 162 112-281 412-597 (1123)
106 KOG0925|consensus 99.6 2.8E-13 6E-18 122.9 17.3 195 89-300 23-220 (699)
107 KOG2340|consensus 99.5 2.1E-14 4.6E-19 131.3 7.6 206 109-317 212-525 (698)
108 PRK13107 preprotein translocas 99.5 5.5E-14 1.2E-18 138.3 10.4 129 113-251 82-216 (908)
109 KOG0923|consensus 99.5 5.9E-13 1.3E-17 124.8 13.8 175 110-300 262-439 (902)
110 TIGR01407 dinG_rel DnaQ family 99.5 1.3E-12 2.9E-17 133.0 16.8 146 98-251 231-454 (850)
111 TIGR00348 hsdR type I site-spe 99.4 2.6E-12 5.7E-17 127.2 15.3 153 114-280 239-404 (667)
112 TIGR03117 cas_csf4 CRISPR-asso 99.4 3.4E-12 7.4E-17 123.7 15.4 73 122-198 10-85 (636)
113 COG1203 CRISPR-associated heli 99.4 2.8E-12 6.1E-17 128.3 14.0 184 113-298 195-400 (733)
114 PRK07246 bifunctional ATP-depe 99.4 4.6E-12 9.9E-17 127.7 15.3 129 113-250 245-449 (820)
115 PF07652 Flavi_DEAD: Flaviviru 99.4 2.2E-12 4.9E-17 100.3 10.0 135 128-282 4-140 (148)
116 KOG0924|consensus 99.4 9.5E-12 2.1E-16 117.1 14.6 170 112-298 355-527 (1042)
117 COG1198 PriA Primosomal protei 99.4 2.7E-11 5.8E-16 118.5 17.1 171 113-303 198-382 (730)
118 KOG0950|consensus 99.4 2.5E-12 5.3E-17 125.4 9.6 175 98-281 207-390 (1008)
119 PF06862 DUF1253: Protein of u 99.3 1.5E-11 3.2E-16 113.8 13.6 161 156-319 31-274 (442)
120 PLN03142 Probable chromatin-re 99.3 1.1E-09 2.3E-14 111.6 25.4 162 113-286 169-338 (1033)
121 smart00489 DEXDc3 DEAD-like he 99.3 4.7E-11 1E-15 106.6 13.9 72 114-185 9-84 (289)
122 smart00488 DEXDc2 DEAD-like he 99.3 4.7E-11 1E-15 106.6 13.9 72 114-185 9-84 (289)
123 KOG0949|consensus 99.3 1.1E-11 2.3E-16 120.8 10.4 161 113-281 511-674 (1330)
124 PF00176 SNF2_N: SNF2 family N 99.3 5E-11 1.1E-15 107.3 12.0 149 127-280 24-174 (299)
125 COG4096 HsdR Type I site-speci 99.2 5.9E-11 1.3E-15 114.8 10.8 167 112-297 164-340 (875)
126 PRK13103 secA preprotein trans 99.2 9.5E-11 2.1E-15 115.9 11.4 129 112-250 81-215 (913)
127 PRK12906 secA preprotein trans 99.2 1.6E-10 3.6E-15 113.7 12.9 136 105-250 72-213 (796)
128 PRK12326 preprotein translocas 99.2 2.4E-10 5.1E-15 110.6 13.2 134 107-250 72-211 (764)
129 PF07517 SecA_DEAD: SecA DEAD- 99.2 9.8E-10 2.1E-14 95.9 15.8 135 106-250 70-210 (266)
130 PRK04914 ATP-dependent helicas 99.1 5E-10 1.1E-14 113.5 13.1 160 113-280 152-317 (956)
131 TIGR02562 cas3_yersinia CRISPR 99.1 1.6E-09 3.6E-14 108.3 14.0 177 105-286 400-642 (1110)
132 PRK08074 bifunctional ATP-depe 99.1 2.3E-09 4.9E-14 110.2 15.5 83 112-199 256-345 (928)
133 KOG0951|consensus 99.1 2.7E-10 5.8E-15 113.8 7.8 151 115-281 1145-1302(1674)
134 CHL00122 secA preprotein trans 99.1 1E-09 2.2E-14 108.3 11.0 128 113-250 76-209 (870)
135 PRK12902 secA preprotein trans 99.0 3E-09 6.4E-14 105.0 13.7 129 112-250 84-218 (939)
136 KOG0385|consensus 99.0 7.4E-09 1.6E-13 99.3 14.8 164 112-287 166-337 (971)
137 KOG0387|consensus 99.0 4.8E-08 1E-12 94.2 19.8 173 96-288 196-386 (923)
138 KOG0391|consensus 98.9 1.4E-08 3.1E-13 100.9 12.2 163 114-287 616-785 (1958)
139 KOG1123|consensus 98.9 1.6E-09 3.4E-14 99.3 4.3 151 112-281 301-461 (776)
140 PRK11747 dinG ATP-dependent DN 98.9 4.6E-08 9.9E-13 97.7 14.9 62 113-179 25-95 (697)
141 PRK14873 primosome assembly pr 98.9 6.3E-08 1.4E-12 95.4 15.5 137 134-287 166-312 (665)
142 KOG1002|consensus 98.8 7.7E-08 1.7E-12 88.3 13.2 158 114-287 185-364 (791)
143 KOG0389|consensus 98.7 7.7E-08 1.7E-12 92.7 10.6 164 114-288 400-573 (941)
144 PRK15483 type III restriction- 98.7 2.7E-07 5.9E-12 92.8 14.6 143 130-280 61-240 (986)
145 PRK12903 secA preprotein trans 98.7 1.9E-07 4.2E-12 92.1 12.9 130 111-250 76-211 (925)
146 PF13086 AAA_11: AAA domain; P 98.7 4.1E-07 9E-12 78.5 13.5 70 114-184 2-75 (236)
147 COG1199 DinG Rad3-related DNA 98.6 3.2E-07 6.9E-12 91.7 12.9 74 107-185 9-86 (654)
148 KOG0390|consensus 98.6 1.1E-06 2.5E-11 86.3 14.6 177 114-297 239-435 (776)
149 KOG0392|consensus 98.6 1.1E-06 2.3E-11 88.6 13.5 165 115-288 977-1149(1549)
150 COG0610 Type I site-specific r 98.6 1.1E-06 2.3E-11 90.5 13.9 141 129-281 274-416 (962)
151 PF02399 Herpes_ori_bp: Origin 98.6 1.5E-06 3.2E-11 85.5 14.0 147 130-292 51-204 (824)
152 KOG4439|consensus 98.5 4.1E-07 8.9E-12 86.8 8.4 137 114-252 326-478 (901)
153 PF13604 AAA_30: AAA domain; P 98.5 1.1E-06 2.5E-11 74.0 10.0 123 114-277 2-130 (196)
154 TIGR01447 recD exodeoxyribonuc 98.5 2.7E-06 5.9E-11 83.0 13.9 142 115-275 147-293 (586)
155 KOG0384|consensus 98.5 9.4E-07 2E-11 89.1 10.6 171 112-297 369-556 (1373)
156 PF02562 PhoH: PhoH-like prote 98.4 4.1E-07 8.8E-12 76.4 6.1 146 112-277 3-155 (205)
157 PRK10536 hypothetical protein; 98.4 8.3E-06 1.8E-10 70.6 14.2 145 109-276 55-211 (262)
158 KOG1000|consensus 98.4 5.1E-06 1.1E-10 76.6 12.7 150 114-279 199-349 (689)
159 PRK10875 recD exonuclease V su 98.4 4.8E-06 1E-10 81.5 12.8 142 115-276 154-300 (615)
160 PRK12900 secA preprotein trans 98.3 1.3E-06 2.8E-11 87.6 8.1 127 114-250 139-271 (1025)
161 COG4889 Predicted helicase [Ge 98.3 4E-06 8.6E-11 82.2 9.6 140 101-250 149-317 (1518)
162 PF09848 DUF2075: Uncharacteri 98.3 5.8E-06 1.3E-10 76.3 10.0 108 130-264 3-117 (352)
163 PF13245 AAA_19: Part of AAA d 98.2 6.6E-06 1.4E-10 57.9 7.5 60 121-182 2-62 (76)
164 PRK12901 secA preprotein trans 98.2 3.5E-06 7.6E-11 84.7 7.9 128 115-250 169-303 (1112)
165 KOG1802|consensus 98.2 1.2E-05 2.7E-10 76.6 10.6 77 105-186 402-478 (935)
166 KOG0388|consensus 98.2 4.6E-06 1E-10 79.9 7.5 159 114-285 568-741 (1185)
167 TIGR01448 recD_rel helicase, p 98.2 3.3E-05 7.3E-10 77.5 14.1 130 112-276 322-451 (720)
168 PF13872 AAA_34: P-loop contai 98.2 5.4E-05 1.2E-09 66.7 13.2 175 95-286 25-228 (303)
169 TIGR00376 DNA helicase, putati 98.2 3.3E-05 7.3E-10 76.4 13.4 66 113-184 157-223 (637)
170 KOG1803|consensus 98.1 2.6E-05 5.6E-10 73.9 10.5 65 113-183 185-250 (649)
171 PRK12723 flagellar biosynthesi 98.0 0.00029 6.2E-09 65.4 16.5 130 129-289 175-309 (388)
172 COG3587 Restriction endonuclea 98.0 2.3E-05 5.1E-10 76.8 9.2 145 130-283 76-247 (985)
173 KOG0952|consensus 98.0 7.5E-06 1.6E-10 81.6 4.4 132 113-251 927-1060(1230)
174 PF13401 AAA_22: AAA domain; P 97.9 8.5E-06 1.8E-10 63.8 3.7 23 127-149 3-25 (131)
175 TIGR00604 rad3 DNA repair heli 97.9 4.6E-05 1E-09 76.7 9.8 74 110-186 7-84 (705)
176 PRK08181 transposase; Validate 97.9 0.00037 7.9E-09 61.5 14.1 112 125-284 103-215 (269)
177 KOG0921|consensus 97.9 8.3E-05 1.8E-09 73.3 10.1 149 123-281 388-538 (1282)
178 PF00580 UvrD-helicase: UvrD/R 97.9 5.3E-05 1.1E-09 68.5 8.5 70 114-187 1-70 (315)
179 KOG0386|consensus 97.9 3.7E-05 8.1E-10 76.5 7.5 132 110-251 391-529 (1157)
180 KOG4150|consensus 97.9 0.0001 2.2E-09 69.4 9.7 204 106-316 279-497 (1034)
181 PRK06526 transposase; Provisio 97.8 0.00024 5.2E-09 62.3 11.6 67 235-301 157-234 (254)
182 PF12340 DUF3638: Protein of u 97.8 0.00019 4.1E-09 61.1 10.2 108 114-227 24-145 (229)
183 KOG1015|consensus 97.8 0.00064 1.4E-08 67.7 14.4 184 97-285 660-867 (1567)
184 KOG0989|consensus 97.8 0.00021 4.5E-09 62.7 9.9 58 233-291 125-185 (346)
185 COG0553 HepA Superfamily II DN 97.8 0.00015 3.3E-09 74.9 10.7 169 112-287 337-520 (866)
186 COG0653 SecA Preprotein transl 97.7 0.00017 3.8E-09 71.6 9.3 127 114-250 81-213 (822)
187 COG1875 NYN ribonuclease and A 97.7 0.00046 9.9E-09 62.1 10.9 144 109-275 224-385 (436)
188 PRK14974 cell division protein 97.7 0.00077 1.7E-08 61.4 12.7 131 129-290 141-276 (336)
189 PRK04296 thymidine kinase; Pro 97.7 0.00012 2.6E-09 61.3 7.0 109 129-277 3-114 (190)
190 PRK14722 flhF flagellar biosyn 97.7 0.00056 1.2E-08 63.0 11.8 167 92-289 82-269 (374)
191 PF14617 CMS1: U3-containing 9 97.7 0.00015 3.2E-09 62.8 7.5 89 158-248 122-212 (252)
192 PF05970 PIF1: PIF1-like helic 97.7 0.0003 6.6E-09 65.2 10.1 59 114-178 2-66 (364)
193 cd00009 AAA The AAA+ (ATPases 97.7 0.0013 2.8E-08 51.8 12.5 19 128-146 19-37 (151)
194 KOG1132|consensus 97.7 0.00043 9.2E-09 68.5 11.1 75 112-186 20-134 (945)
195 KOG1805|consensus 97.6 0.00035 7.5E-09 69.7 10.0 125 112-251 668-810 (1100)
196 PRK13889 conjugal transfer rel 97.6 0.0011 2.4E-08 68.3 13.7 124 112-277 345-470 (988)
197 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0014 2.9E-08 66.4 14.0 122 112-275 351-474 (744)
198 PRK11889 flhF flagellar biosyn 97.5 0.0027 6E-08 58.5 13.7 130 129-290 242-375 (436)
199 cd01120 RecA-like_NTPases RecA 97.5 0.0027 5.9E-08 51.1 12.1 38 131-174 2-39 (165)
200 PRK05703 flhF flagellar biosyn 97.5 0.0048 1E-07 58.3 14.9 130 128-290 221-355 (424)
201 smart00382 AAA ATPases associa 97.5 0.00054 1.2E-08 53.5 7.4 41 128-174 2-42 (148)
202 PRK07952 DNA replication prote 97.4 0.0048 1E-07 53.7 12.9 50 235-284 160-211 (244)
203 COG0556 UvrB Helicase subunit 97.4 0.00049 1.1E-08 64.6 7.0 70 114-192 13-87 (663)
204 COG1419 FlhF Flagellar GTP-bin 97.4 0.0062 1.3E-07 56.1 14.0 131 128-289 203-335 (407)
205 PRK08116 hypothetical protein; 97.4 0.0093 2E-07 52.8 14.9 49 235-283 176-226 (268)
206 PHA02533 17 large terminase pr 97.4 0.0029 6.3E-08 61.3 12.4 148 113-278 59-210 (534)
207 PRK06835 DNA replication prote 97.3 0.014 3E-07 53.2 15.8 48 235-282 244-293 (329)
208 PRK06921 hypothetical protein; 97.3 0.0092 2E-07 52.7 14.2 38 127-169 116-153 (266)
209 PRK07003 DNA polymerase III su 97.3 0.0089 1.9E-07 59.5 15.3 42 236-279 118-159 (830)
210 PF00448 SRP54: SRP54-type pro 97.3 0.008 1.7E-07 50.6 12.9 127 131-287 4-134 (196)
211 PRK12377 putative replication 97.3 0.03 6.4E-07 48.9 16.4 68 235-302 161-236 (248)
212 PRK07764 DNA polymerase III su 97.2 0.0072 1.6E-07 61.5 14.4 46 235-282 118-163 (824)
213 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.0022 4.9E-08 55.1 9.5 21 127-147 37-57 (226)
214 PRK06893 DNA replication initi 97.2 0.0016 3.4E-08 56.3 8.0 47 235-281 89-137 (229)
215 PRK14949 DNA polymerase III su 97.2 0.019 4.1E-07 58.3 16.4 45 236-282 118-162 (944)
216 PRK11054 helD DNA helicase IV; 97.2 0.0021 4.5E-08 64.2 9.5 84 109-196 192-275 (684)
217 PRK08727 hypothetical protein; 97.2 0.0035 7.6E-08 54.3 9.8 47 236-282 92-140 (233)
218 COG1444 Predicted P-loop ATPas 97.2 0.0077 1.7E-07 59.8 13.0 160 96-280 197-358 (758)
219 PRK14087 dnaA chromosomal repl 97.2 0.0066 1.4E-07 57.8 12.3 110 129-282 142-253 (450)
220 PRK05642 DNA replication initi 97.1 0.0032 6.9E-08 54.6 9.3 47 235-281 95-142 (234)
221 PRK13826 Dtr system oriT relax 97.1 0.012 2.7E-07 61.2 15.0 137 98-277 367-505 (1102)
222 PRK10919 ATP-dependent DNA hel 97.1 0.0011 2.5E-08 66.3 7.4 69 114-186 3-71 (672)
223 PF05127 Helicase_RecD: Helica 97.1 0.0002 4.2E-09 58.8 1.5 125 132-280 1-125 (177)
224 TIGR00362 DnaA chromosomal rep 97.1 0.016 3.5E-07 54.6 14.3 37 129-169 137-173 (405)
225 TIGR02881 spore_V_K stage V sp 97.1 0.015 3.2E-07 51.4 13.2 19 129-147 43-61 (261)
226 PF03354 Terminase_1: Phage Te 97.1 0.0033 7.1E-08 60.6 9.7 149 116-274 1-159 (477)
227 PRK14960 DNA polymerase III su 97.1 0.017 3.7E-07 56.8 14.4 42 236-279 117-158 (702)
228 PRK08084 DNA replication initi 97.1 0.0035 7.5E-08 54.4 8.9 42 238-280 98-142 (235)
229 cd01124 KaiC KaiC is a circadi 97.1 0.0052 1.1E-07 51.0 9.6 48 131-185 2-49 (187)
230 PRK08903 DnaA regulatory inact 97.0 0.0089 1.9E-07 51.5 11.1 43 237-280 90-133 (227)
231 PLN03025 replication factor C 97.0 0.034 7.3E-07 50.6 15.3 42 236-279 98-139 (319)
232 PRK07994 DNA polymerase III su 97.0 0.014 3E-07 57.7 13.4 43 236-280 118-160 (647)
233 PRK14723 flhF flagellar biosyn 97.0 0.032 6.9E-07 56.0 16.0 128 129-289 186-317 (767)
234 PHA02544 44 clamp loader, smal 97.0 0.016 3.5E-07 52.6 13.0 39 237-275 100-138 (316)
235 PRK12726 flagellar biosynthesi 97.0 0.034 7.3E-07 51.3 14.8 24 128-151 206-229 (407)
236 PRK12727 flagellar biosynthesi 97.0 0.058 1.3E-06 51.9 16.8 58 92-149 300-371 (559)
237 PRK06731 flhF flagellar biosyn 97.0 0.028 6.2E-07 49.6 13.7 131 127-290 74-209 (270)
238 PRK00149 dnaA chromosomal repl 97.0 0.021 4.7E-07 54.5 14.1 44 129-177 149-192 (450)
239 COG1484 DnaC DNA replication p 97.0 0.0081 1.8E-07 52.7 10.2 48 127-181 104-151 (254)
240 TIGR01074 rep ATP-dependent DN 97.0 0.0049 1.1E-07 62.0 10.0 70 114-187 2-71 (664)
241 COG1474 CDC6 Cdc6-related prot 96.9 0.045 9.7E-07 50.7 15.4 45 236-281 122-167 (366)
242 PRK11331 5-methylcytosine-spec 96.9 0.0095 2.1E-07 56.0 10.7 33 114-146 180-212 (459)
243 PRK14712 conjugal transfer nic 96.9 0.021 4.5E-07 61.6 14.3 62 113-178 835-900 (1623)
244 TIGR00631 uvrb excinuclease AB 96.9 0.0076 1.7E-07 60.0 10.6 66 113-187 9-79 (655)
245 cd01122 GP4d_helicase GP4d_hel 96.9 0.0042 9E-08 55.1 8.0 54 125-184 27-80 (271)
246 TIGR01547 phage_term_2 phage t 96.9 0.0044 9.5E-08 58.2 8.4 138 130-280 3-142 (396)
247 PHA03333 putative ATPase subun 96.9 0.029 6.2E-07 55.2 13.8 140 124-279 183-333 (752)
248 COG3973 Superfamily I DNA and 96.9 0.0047 1E-07 59.1 8.3 90 97-187 188-285 (747)
249 PRK14088 dnaA chromosomal repl 96.9 0.039 8.4E-07 52.5 14.7 38 129-170 131-168 (440)
250 TIGR01075 uvrD DNA helicase II 96.9 0.0028 6.1E-08 64.2 7.4 71 113-187 4-74 (715)
251 PF05621 TniB: Bacterial TniB 96.8 0.0095 2.1E-07 52.9 9.6 36 236-271 144-181 (302)
252 PF00308 Bac_DnaA: Bacterial d 96.8 0.01 2.2E-07 50.9 9.6 48 235-282 95-144 (219)
253 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.025 5.4E-07 45.7 11.2 140 131-287 5-147 (159)
254 COG2805 PilT Tfp pilus assembl 96.8 0.0061 1.3E-07 53.7 8.0 50 87-155 102-151 (353)
255 PRK08691 DNA polymerase III su 96.8 0.029 6.4E-07 55.6 13.6 40 235-275 117-156 (709)
256 PRK09183 transposase/IS protei 96.8 0.03 6.5E-07 49.3 12.5 25 125-149 99-123 (259)
257 PRK00771 signal recognition pa 96.8 0.025 5.5E-07 53.5 12.6 51 239-289 177-228 (437)
258 PRK04195 replication factor C 96.8 0.024 5.1E-07 54.8 12.8 20 128-147 39-58 (482)
259 PRK05986 cob(I)alamin adenolsy 96.8 0.021 4.7E-07 47.4 10.7 145 127-287 21-167 (191)
260 PRK13709 conjugal transfer nic 96.8 0.017 3.6E-07 63.0 12.6 65 112-178 966-1032(1747)
261 PF05729 NACHT: NACHT domain 96.8 0.11 2.3E-06 41.8 14.8 46 130-176 2-47 (166)
262 CHL00181 cbbX CbbX; Provisiona 96.8 0.061 1.3E-06 48.1 14.3 20 128-147 59-78 (287)
263 PRK11773 uvrD DNA-dependent he 96.7 0.0038 8.3E-08 63.2 7.4 71 113-187 9-79 (721)
264 TIGR02760 TraI_TIGR conjugativ 96.7 0.023 5E-07 63.3 13.7 135 113-277 429-566 (1960)
265 PRK05707 DNA polymerase III su 96.7 0.017 3.7E-07 52.6 10.8 41 114-155 4-48 (328)
266 PRK14957 DNA polymerase III su 96.7 0.062 1.3E-06 52.3 15.0 40 235-275 117-156 (546)
267 TIGR02785 addA_Gpos recombinat 96.7 0.013 2.7E-07 62.9 11.2 123 114-248 2-126 (1232)
268 PRK14956 DNA polymerase III su 96.7 0.026 5.6E-07 53.7 12.0 20 130-149 42-61 (484)
269 PHA03368 DNA packaging termina 96.7 0.022 4.8E-07 55.7 11.6 135 128-280 254-392 (738)
270 PRK05298 excinuclease ABC subu 96.7 0.013 2.9E-07 58.5 10.6 66 113-187 12-82 (652)
271 PRK14959 DNA polymerase III su 96.7 0.046 1E-06 53.7 13.8 20 130-149 40-59 (624)
272 TIGR01425 SRP54_euk signal rec 96.6 0.044 9.5E-07 51.5 13.0 57 130-195 102-160 (429)
273 KOG1001|consensus 96.6 0.012 2.6E-07 58.5 9.6 114 130-253 154-270 (674)
274 PRK12402 replication factor C 96.6 0.098 2.1E-06 47.8 15.3 39 236-275 124-162 (337)
275 PF13173 AAA_14: AAA domain 96.6 0.046 9.9E-07 42.5 11.3 38 237-277 61-98 (128)
276 PTZ00112 origin recognition co 96.6 0.091 2E-06 53.4 15.5 41 236-277 868-909 (1164)
277 PF00004 AAA: ATPase family as 96.6 0.038 8.1E-07 42.7 10.8 16 131-146 1-16 (132)
278 PRK10867 signal recognition pa 96.6 0.044 9.5E-07 51.8 12.9 86 130-223 102-195 (433)
279 PRK14952 DNA polymerase III su 96.6 0.084 1.8E-06 51.9 15.2 47 235-283 116-162 (584)
280 KOG0953|consensus 96.6 0.0021 4.5E-08 60.8 3.9 98 130-252 193-290 (700)
281 PRK14964 DNA polymerase III su 96.6 0.071 1.5E-06 51.1 14.4 21 129-149 36-56 (491)
282 TIGR00064 ftsY signal recognit 96.6 0.058 1.3E-06 47.8 13.0 35 129-169 73-107 (272)
283 TIGR00708 cobA cob(I)alamin ad 96.6 0.0057 1.2E-07 50.0 6.0 140 130-287 7-149 (173)
284 COG2109 BtuR ATP:corrinoid ade 96.6 0.012 2.6E-07 48.2 7.8 142 131-288 31-175 (198)
285 PRK12422 chromosomal replicati 96.6 0.037 7.9E-07 52.7 12.2 36 129-170 142-177 (445)
286 PRK12323 DNA polymerase III su 96.6 0.016 3.5E-07 56.8 9.9 40 235-275 122-161 (700)
287 PF02572 CobA_CobO_BtuR: ATP:c 96.6 0.023 5.1E-07 46.4 9.4 141 131-287 6-148 (172)
288 PRK09111 DNA polymerase III su 96.6 0.046 9.9E-07 53.9 13.1 40 235-275 130-169 (598)
289 PRK14958 DNA polymerase III su 96.5 0.027 5.9E-07 54.5 11.2 39 236-275 118-156 (509)
290 COG3421 Uncharacterized protei 96.5 0.0031 6.7E-08 60.1 4.6 142 133-281 2-168 (812)
291 PF13177 DNA_pol3_delta2: DNA 96.5 0.061 1.3E-06 43.8 11.7 46 236-283 101-146 (162)
292 COG1435 Tdk Thymidine kinase [ 96.5 0.047 1E-06 45.2 10.9 104 128-264 4-108 (201)
293 PRK14086 dnaA chromosomal repl 96.5 0.047 1E-06 53.5 12.6 48 235-282 375-424 (617)
294 PRK08533 flagellar accessory p 96.5 0.062 1.3E-06 46.5 12.2 51 127-184 23-73 (230)
295 PRK14962 DNA polymerase III su 96.5 0.089 1.9E-06 50.5 14.2 19 130-148 38-56 (472)
296 PRK06645 DNA polymerase III su 96.5 0.11 2.3E-06 50.3 14.8 20 130-149 45-64 (507)
297 PF06745 KaiC: KaiC; InterPro 96.5 0.018 3.8E-07 49.6 8.8 132 127-278 18-160 (226)
298 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.059 1.3E-06 49.8 12.5 129 128-301 62-201 (362)
299 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.023 5E-07 49.3 9.4 53 127-186 20-72 (237)
300 PRK14951 DNA polymerase III su 96.5 0.061 1.3E-06 53.1 13.2 45 235-281 122-166 (618)
301 PRK07471 DNA polymerase III su 96.4 0.037 8E-07 51.2 11.1 132 130-276 43-179 (365)
302 PRK14721 flhF flagellar biosyn 96.4 0.066 1.4E-06 50.3 12.8 131 128-289 191-323 (420)
303 KOG0733|consensus 96.4 0.021 4.6E-07 55.0 9.5 176 89-333 506-694 (802)
304 COG0470 HolB ATPase involved i 96.4 0.016 3.4E-07 52.6 8.6 45 235-281 107-151 (325)
305 PRK14965 DNA polymerase III su 96.4 0.031 6.7E-07 55.1 10.7 45 235-281 117-161 (576)
306 PRK12724 flagellar biosynthesi 96.4 0.11 2.3E-06 48.7 13.6 125 130-289 225-356 (432)
307 PRK08769 DNA polymerase III su 96.4 0.04 8.7E-07 49.9 10.7 43 112-155 3-52 (319)
308 TIGR01073 pcrA ATP-dependent D 96.4 0.01 2.2E-07 60.3 7.6 71 113-187 4-74 (726)
309 PRK13894 conjugal transfer ATP 96.4 0.014 3E-07 53.0 7.7 67 102-174 123-190 (319)
310 PRK14963 DNA polymerase III su 96.3 0.11 2.4E-06 50.2 14.1 23 130-153 38-60 (504)
311 PRK08939 primosomal protein Dn 96.3 0.06 1.3E-06 48.6 11.5 50 235-284 215-267 (306)
312 PF05496 RuvB_N: Holliday junc 96.3 0.011 2.3E-07 50.4 6.1 18 130-147 52-69 (233)
313 PTZ00293 thymidine kinase; Pro 96.3 0.029 6.3E-07 47.4 8.8 39 128-172 4-42 (211)
314 PRK13342 recombination factor 96.3 0.053 1.1E-06 51.3 11.6 18 130-147 38-55 (413)
315 TIGR03499 FlhF flagellar biosy 96.3 0.04 8.7E-07 49.2 10.1 21 129-149 195-215 (282)
316 TIGR00596 rad1 DNA repair prot 96.3 0.032 6.9E-07 56.8 10.3 83 214-297 9-97 (814)
317 PRK13833 conjugal transfer pro 96.3 0.02 4.3E-07 51.9 8.0 66 104-175 121-187 (323)
318 PRK05563 DNA polymerase III su 96.2 0.027 5.9E-07 55.2 9.6 20 130-149 40-59 (559)
319 PRK14961 DNA polymerase III su 96.2 0.22 4.8E-06 46.2 15.1 39 235-274 117-155 (363)
320 KOG0298|consensus 96.2 0.016 3.4E-07 59.9 7.7 154 128-286 374-558 (1394)
321 KOG1016|consensus 96.2 0.15 3.3E-06 50.4 13.9 185 95-286 244-481 (1387)
322 PRK09112 DNA polymerase III su 96.2 0.057 1.2E-06 49.7 10.6 46 235-282 139-184 (351)
323 PRK00411 cdc6 cell division co 96.1 0.11 2.3E-06 48.8 12.8 19 129-147 56-74 (394)
324 TIGR02928 orc1/cdc6 family rep 96.1 0.2 4.3E-06 46.4 14.5 17 129-145 41-57 (365)
325 KOG0991|consensus 96.1 0.031 6.7E-07 47.6 7.9 18 130-147 50-67 (333)
326 COG4626 Phage terminase-like p 96.1 0.072 1.6E-06 51.0 11.3 148 113-276 61-223 (546)
327 COG2256 MGS1 ATPase related to 96.1 0.012 2.6E-07 53.9 5.8 18 130-147 50-67 (436)
328 COG4962 CpaF Flp pilus assembl 96.1 0.013 2.8E-07 52.7 5.9 60 110-176 154-214 (355)
329 PRK07940 DNA polymerase III su 96.1 0.044 9.4E-07 51.3 9.7 51 235-287 115-165 (394)
330 PF05876 Terminase_GpA: Phage 96.1 0.018 3.9E-07 56.4 7.4 126 113-251 16-148 (557)
331 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.058 1.3E-06 47.5 9.9 37 127-169 35-71 (259)
332 PRK14969 DNA polymerase III su 96.1 0.087 1.9E-06 51.3 12.0 40 235-275 117-156 (527)
333 TIGR03015 pepcterm_ATPase puta 96.1 0.053 1.1E-06 47.8 9.8 35 113-147 23-62 (269)
334 cd03115 SRP The signal recogni 96.1 0.3 6.5E-06 40.0 13.6 53 237-289 82-135 (173)
335 PRK14955 DNA polymerase III su 96.0 0.065 1.4E-06 50.3 10.4 20 130-149 40-59 (397)
336 PRK00440 rfc replication facto 96.0 0.43 9.2E-06 43.2 15.6 39 236-275 101-139 (319)
337 PRK13341 recombination factor 96.0 0.12 2.7E-06 52.1 12.8 40 237-281 109-148 (725)
338 cd00984 DnaB_C DnaB helicase C 96.0 0.027 6E-07 48.9 7.3 39 126-169 11-49 (242)
339 PRK06090 DNA polymerase III su 95.9 0.17 3.8E-06 45.8 12.4 41 114-155 4-51 (319)
340 TIGR02760 TraI_TIGR conjugativ 95.9 0.11 2.5E-06 58.0 13.3 62 112-178 1018-1084(1960)
341 PRK08699 DNA polymerase III su 95.9 0.23 5E-06 45.3 13.1 39 115-154 3-46 (325)
342 PRK11823 DNA repair protein Ra 95.9 0.054 1.2E-06 51.6 9.4 53 127-186 79-131 (446)
343 COG2804 PulE Type II secretory 95.9 0.027 6E-07 53.2 7.2 39 115-154 243-283 (500)
344 TIGR02782 TrbB_P P-type conjug 95.8 0.049 1.1E-06 49.0 8.4 67 103-175 108-175 (299)
345 PRK07414 cob(I)yrinic acid a,c 95.8 0.039 8.4E-07 45.3 7.0 142 130-287 23-167 (178)
346 KOG0737|consensus 95.8 0.13 2.8E-06 46.8 10.6 62 84-145 82-144 (386)
347 PRK06995 flhF flagellar biosyn 95.7 0.057 1.2E-06 51.6 8.8 23 128-150 256-278 (484)
348 PRK14954 DNA polymerase III su 95.6 0.16 3.5E-06 50.2 12.0 20 130-149 40-59 (620)
349 PRK14950 DNA polymerase III su 95.6 0.11 2.4E-06 51.4 10.9 20 130-149 40-59 (585)
350 TIGR02880 cbbX_cfxQ probable R 95.6 0.28 6E-06 43.9 12.5 18 128-145 58-75 (284)
351 COG2909 MalT ATP-dependent tra 95.6 0.047 1E-06 54.6 8.1 42 239-280 131-172 (894)
352 PRK13900 type IV secretion sys 95.6 0.053 1.2E-06 49.5 7.7 44 125-175 157-200 (332)
353 TIGR00678 holB DNA polymerase 95.5 0.12 2.6E-06 43.0 9.3 41 235-277 94-134 (188)
354 PRK13851 type IV secretion sys 95.5 0.026 5.7E-07 51.7 5.5 44 125-175 159-202 (344)
355 COG0466 Lon ATP-dependent Lon 95.5 0.028 6E-07 55.2 5.8 46 216-265 400-445 (782)
356 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.19 4.1E-06 43.2 10.6 51 127-184 19-69 (229)
357 PRK05896 DNA polymerase III su 95.4 0.096 2.1E-06 51.3 9.4 21 129-149 39-59 (605)
358 TIGR02237 recomb_radB DNA repa 95.4 0.26 5.6E-06 41.7 11.1 39 127-171 11-49 (209)
359 TIGR00959 ffh signal recogniti 95.4 0.42 9E-06 45.2 13.2 86 130-223 101-194 (428)
360 KOG0732|consensus 95.4 0.024 5.2E-07 58.2 5.2 143 88-281 259-417 (1080)
361 cd01121 Sms Sms (bacterial rad 95.4 0.11 2.4E-06 48.2 9.2 52 127-185 81-132 (372)
362 KOG0344|consensus 95.4 0.79 1.7E-05 44.1 14.8 127 136-277 365-495 (593)
363 PRK06964 DNA polymerase III su 95.4 0.29 6.3E-06 44.8 11.8 41 115-156 3-48 (342)
364 PRK06067 flagellar accessory p 95.3 0.23 4.9E-06 43.0 10.6 51 128-185 25-75 (234)
365 COG3972 Superfamily I DNA and 95.3 0.059 1.3E-06 50.7 7.1 169 115-298 164-348 (660)
366 PRK08451 DNA polymerase III su 95.3 0.12 2.6E-06 50.2 9.5 40 235-275 115-154 (535)
367 PRK14953 DNA polymerase III su 95.3 0.7 1.5E-05 44.6 14.8 41 235-277 117-157 (486)
368 PF03237 Terminase_6: Terminas 95.3 0.33 7.1E-06 44.7 12.3 145 132-293 1-154 (384)
369 PRK07993 DNA polymerase III su 95.3 0.27 5.9E-06 45.0 11.4 40 115-155 4-50 (334)
370 PRK11034 clpA ATP-dependent Cl 95.3 0.38 8.2E-06 48.9 13.4 45 239-283 280-328 (758)
371 TIGR03689 pup_AAA proteasome A 95.3 0.13 2.8E-06 49.6 9.6 18 128-145 216-233 (512)
372 cd01393 recA_like RecA is a b 95.2 0.12 2.6E-06 44.3 8.6 45 128-172 19-63 (226)
373 PRK04328 hypothetical protein; 95.2 0.19 4.2E-06 43.9 9.9 53 127-186 22-74 (249)
374 TIGR00635 ruvB Holliday juncti 95.2 0.42 9.1E-06 43.0 12.4 18 129-146 31-48 (305)
375 PRK14948 DNA polymerase III su 95.2 0.15 3.2E-06 50.7 10.0 21 129-149 39-59 (620)
376 PF08423 Rad51: Rad51; InterP 95.2 0.023 4.9E-07 50.0 3.9 54 121-174 26-84 (256)
377 cd01126 TraG_VirD4 The TraG/Tr 95.2 0.018 4E-07 53.8 3.5 48 130-185 1-48 (384)
378 PRK07133 DNA polymerase III su 95.1 1.7 3.6E-05 43.9 17.0 20 130-149 42-61 (725)
379 PRK05973 replicative DNA helic 95.1 0.081 1.8E-06 45.8 7.0 65 113-185 50-114 (237)
380 TIGR02655 circ_KaiC circadian 95.1 0.18 4E-06 48.6 10.2 51 129-186 264-314 (484)
381 TIGR02525 plasmid_TraJ plasmid 95.1 0.073 1.6E-06 49.3 7.1 44 127-174 148-191 (372)
382 PF01443 Viral_helicase1: Vira 95.1 0.035 7.5E-07 47.9 4.7 15 131-145 1-15 (234)
383 PF00437 T2SE: Type II/IV secr 95.1 0.063 1.4E-06 47.5 6.5 43 126-174 125-167 (270)
384 PHA00729 NTP-binding motif con 95.0 0.47 1E-05 40.6 11.4 74 214-288 60-138 (226)
385 cd03239 ABC_SMC_head The struc 95.0 0.049 1.1E-06 45.1 5.3 41 236-276 115-156 (178)
386 PF01695 IstB_IS21: IstB-like 95.0 0.037 8E-07 45.8 4.5 46 125-177 44-89 (178)
387 TIGR00763 lon ATP-dependent pr 95.0 0.25 5.4E-06 50.7 11.4 19 128-146 347-365 (775)
388 KOG0742|consensus 95.0 0.05 1.1E-06 50.0 5.6 17 129-145 385-401 (630)
389 PRK06305 DNA polymerase III su 95.0 1 2.2E-05 43.1 14.7 20 130-149 41-60 (451)
390 PRK07399 DNA polymerase III su 95.0 0.27 5.8E-06 44.6 10.3 58 215-276 104-161 (314)
391 PRK03992 proteasome-activating 95.0 0.25 5.5E-06 46.3 10.5 17 129-145 166-182 (389)
392 PRK06871 DNA polymerase III su 94.9 0.7 1.5E-05 42.1 12.9 40 115-155 4-50 (325)
393 TIGR02688 conserved hypothetic 94.8 0.18 3.9E-06 47.2 8.8 24 123-146 204-227 (449)
394 TIGR02524 dot_icm_DotB Dot/Icm 94.8 0.087 1.9E-06 48.7 6.7 26 127-153 133-158 (358)
395 TIGR01243 CDC48 AAA family ATP 94.8 0.22 4.7E-06 50.8 10.2 52 91-145 175-229 (733)
396 TIGR02639 ClpA ATP-dependent C 94.8 0.52 1.1E-05 48.0 12.9 19 129-147 204-222 (731)
397 PRK10416 signal recognition pa 94.8 1.1 2.4E-05 40.7 13.7 54 236-289 195-255 (318)
398 TIGR01243 CDC48 AAA family ATP 94.7 0.33 7.1E-06 49.5 11.4 18 128-145 487-504 (733)
399 PF02534 T4SS-DNA_transf: Type 94.7 0.042 9.1E-07 52.9 4.8 50 129-186 45-94 (469)
400 KOG0738|consensus 94.7 0.21 4.6E-06 45.8 8.8 57 89-145 181-262 (491)
401 COG1197 Mfd Transcription-repa 94.7 1.1 2.4E-05 46.9 14.9 135 118-265 732-897 (1139)
402 PRK04841 transcriptional regul 94.7 0.43 9.2E-06 49.9 12.6 42 239-280 123-164 (903)
403 KOG0744|consensus 94.7 0.34 7.4E-06 43.4 9.7 111 128-250 177-322 (423)
404 PRK10436 hypothetical protein; 94.7 0.16 3.6E-06 48.4 8.5 38 115-153 203-242 (462)
405 COG0593 DnaA ATPase involved i 94.6 0.23 5.1E-06 46.3 9.2 47 237-283 175-223 (408)
406 TIGR03880 KaiC_arch_3 KaiC dom 94.6 0.36 7.8E-06 41.4 9.9 52 127-185 15-66 (224)
407 COG0552 FtsY Signal recognitio 94.6 1 2.2E-05 40.6 12.7 129 131-289 142-280 (340)
408 KOG0741|consensus 94.6 0.48 1E-05 45.3 11.0 69 95-171 493-573 (744)
409 PRK06647 DNA polymerase III su 94.5 0.37 8.1E-06 47.3 10.7 19 130-148 40-58 (563)
410 TIGR02538 type_IV_pilB type IV 94.5 0.15 3.2E-06 50.3 7.9 44 106-153 295-340 (564)
411 PRK14971 DNA polymerase III su 94.4 0.75 1.6E-05 45.8 12.8 43 235-279 119-161 (614)
412 PRK09087 hypothetical protein; 94.4 0.25 5.4E-06 42.6 8.3 19 128-146 44-62 (226)
413 PRK13897 type IV secretion sys 94.4 0.057 1.2E-06 53.2 4.8 50 129-186 159-208 (606)
414 TIGR00580 mfd transcription-re 94.3 0.24 5.2E-06 51.5 9.4 79 162-249 660-742 (926)
415 PRK14970 DNA polymerase III su 94.3 1.6 3.4E-05 40.6 14.2 23 130-153 41-63 (367)
416 PRK10689 transcription-repair 94.3 0.28 6.2E-06 52.2 10.0 79 162-249 809-891 (1147)
417 cd00983 recA RecA is a bacter 94.3 0.43 9.2E-06 43.4 9.8 44 127-176 54-97 (325)
418 TIGR01241 FtsH_fam ATP-depende 94.3 1.6 3.5E-05 42.3 14.6 54 89-145 50-105 (495)
419 PHA03372 DNA packaging termina 94.2 0.96 2.1E-05 44.1 12.5 129 128-278 202-337 (668)
420 CHL00176 ftsH cell division pr 94.2 2.1 4.6E-05 42.8 15.4 18 128-145 216-233 (638)
421 TIGR02397 dnaX_nterm DNA polym 94.2 0.29 6.4E-06 45.0 8.9 23 130-153 38-60 (355)
422 COG1485 Predicted ATPase [Gene 94.1 2 4.3E-05 39.1 13.5 146 129-319 66-223 (367)
423 KOG2004|consensus 94.1 0.18 3.8E-06 49.8 7.3 33 215-251 487-519 (906)
424 KOG0060|consensus 94.1 0.034 7.4E-07 53.3 2.4 65 217-287 570-634 (659)
425 KOG2028|consensus 94.1 0.35 7.5E-06 44.1 8.6 48 130-183 164-211 (554)
426 TIGR03346 chaperone_ClpB ATP-d 94.0 0.72 1.6E-05 47.9 12.2 47 238-284 267-316 (852)
427 PRK09354 recA recombinase A; P 94.0 0.5 1.1E-05 43.3 9.7 44 127-176 59-102 (349)
428 cd01129 PulE-GspE PulE/GspE Th 94.0 0.21 4.6E-06 44.1 7.2 38 115-153 65-104 (264)
429 PHA00350 putative assembly pro 94.0 0.29 6.4E-06 45.6 8.3 23 131-153 4-27 (399)
430 TIGR03345 VI_ClpV1 type VI sec 94.0 0.19 4.2E-06 51.9 7.9 34 114-147 188-227 (852)
431 COG2255 RuvB Holliday junction 94.0 0.2 4.3E-06 44.1 6.7 18 130-147 54-71 (332)
432 PRK07413 hypothetical protein; 93.9 0.18 3.8E-06 46.6 6.7 141 130-287 202-358 (382)
433 TIGR02533 type_II_gspE general 93.9 0.23 5E-06 47.8 7.9 38 115-153 227-266 (486)
434 PRK09361 radB DNA repair and r 93.8 0.26 5.7E-06 42.2 7.4 38 128-171 23-60 (225)
435 KOG1133|consensus 93.8 0.11 2.3E-06 50.8 5.2 41 113-153 15-59 (821)
436 KOG2035|consensus 93.7 1.6 3.4E-05 38.5 11.6 78 235-334 125-202 (351)
437 PRK00080 ruvB Holliday junctio 93.7 0.18 3.8E-06 46.1 6.4 19 129-147 52-70 (328)
438 PF12846 AAA_10: AAA-like doma 93.7 0.12 2.5E-06 46.2 5.1 26 128-153 1-26 (304)
439 TIGR03819 heli_sec_ATPase heli 93.6 0.21 4.5E-06 45.8 6.8 63 103-174 154-217 (340)
440 cd01394 radB RadB. The archaea 93.6 0.53 1.2E-05 40.1 8.9 36 128-169 19-54 (218)
441 COG1132 MdlB ABC-type multidru 93.6 0.81 1.7E-05 45.2 11.3 42 235-276 481-522 (567)
442 TIGR03600 phage_DnaB phage rep 93.5 1 2.2E-05 42.7 11.5 40 125-169 191-230 (421)
443 PRK13850 type IV secretion sys 93.4 0.074 1.6E-06 53.1 3.7 48 129-184 140-187 (670)
444 TIGR02868 CydC thiol reductant 93.4 0.96 2.1E-05 44.2 11.5 19 127-145 360-378 (529)
445 COG0630 VirB11 Type IV secreto 93.4 0.3 6.5E-06 44.2 7.3 55 113-174 127-182 (312)
446 TIGR01420 pilT_fam pilus retra 93.4 0.25 5.5E-06 45.4 6.9 43 127-174 121-163 (343)
447 TIGR02238 recomb_DMC1 meiotic 93.4 0.28 6.1E-06 44.4 7.0 56 129-184 97-153 (313)
448 TIGR00416 sms DNA repair prote 93.3 0.44 9.6E-06 45.5 8.6 52 127-185 93-144 (454)
449 COG0210 UvrD Superfamily I DNA 93.3 0.24 5.1E-06 49.9 7.2 71 113-187 2-72 (655)
450 PRK10787 DNA-binding ATP-depen 93.3 1.3 2.7E-05 45.5 12.2 31 218-252 401-431 (784)
451 PRK06904 replicative DNA helic 93.2 1.8 4E-05 41.6 12.7 148 125-282 218-387 (472)
452 COG1074 RecB ATP-dependent exo 93.2 0.19 4.2E-06 53.6 6.6 58 127-185 15-72 (1139)
453 KOG0331|consensus 93.2 0.6 1.3E-05 44.8 9.1 73 160-243 339-415 (519)
454 PRK07413 hypothetical protein; 93.2 0.2 4.3E-06 46.2 5.8 146 130-287 21-177 (382)
455 PRK13764 ATPase; Provisional 93.2 0.22 4.7E-06 49.0 6.3 26 127-153 256-281 (602)
456 PF01637 Arch_ATPase: Archaeal 93.1 0.23 5E-06 42.3 6.0 55 219-278 105-165 (234)
457 PRK08058 DNA polymerase III su 93.1 0.92 2E-05 41.5 10.1 41 235-277 108-148 (329)
458 TIGR00665 DnaB replicative DNA 93.1 1.1 2.3E-05 42.7 11.0 138 128-276 195-353 (434)
459 PF13481 AAA_25: AAA domain; P 93.1 0.36 7.7E-06 40.2 6.9 60 127-187 31-94 (193)
460 PRK05564 DNA polymerase III su 93.1 0.81 1.8E-05 41.5 9.7 44 235-280 91-134 (313)
461 cd01130 VirB11-like_ATPase Typ 93.0 0.21 4.5E-06 41.6 5.3 31 115-145 11-42 (186)
462 PRK10865 protein disaggregatio 93.0 1.1 2.4E-05 46.5 11.5 18 130-147 201-218 (857)
463 PRK13695 putative NTPase; Prov 93.0 1.2 2.7E-05 36.3 9.9 18 130-147 2-19 (174)
464 KOG1807|consensus 92.9 0.22 4.9E-06 49.3 5.9 70 114-183 379-448 (1025)
465 TIGR02640 gas_vesic_GvpN gas v 92.7 0.12 2.6E-06 45.6 3.7 29 119-147 12-40 (262)
466 cd00544 CobU Adenosylcobinamid 92.7 1 2.3E-05 36.8 8.9 45 131-184 2-46 (169)
467 KOG0333|consensus 92.7 0.76 1.6E-05 43.8 8.8 70 162-242 517-590 (673)
468 KOG0734|consensus 92.6 0.89 1.9E-05 43.6 9.2 44 238-281 397-450 (752)
469 KOG0740|consensus 92.6 0.084 1.8E-06 49.3 2.5 61 235-295 243-316 (428)
470 TIGR00631 uvrb excinuclease AB 92.6 4.8 0.0001 40.5 14.9 113 161-284 441-559 (655)
471 PLN03186 DNA repair protein RA 92.6 0.28 6.2E-06 44.9 5.9 44 129-172 124-167 (342)
472 PRK09165 replicative DNA helic 92.5 2.5 5.4E-05 41.0 12.5 25 129-153 218-242 (497)
473 PRK09302 circadian clock prote 92.5 0.96 2.1E-05 44.0 9.8 51 128-185 273-323 (509)
474 COG1219 ClpX ATP-dependent pro 92.4 0.1 2.2E-06 46.6 2.7 18 129-146 98-115 (408)
475 KOG0739|consensus 92.4 3.4 7.3E-05 36.9 11.8 63 238-300 226-300 (439)
476 KOG0730|consensus 92.3 2 4.4E-05 42.2 11.4 54 89-145 429-485 (693)
477 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.3 2 4.3E-05 34.0 9.9 39 235-276 86-124 (144)
478 PRK04537 ATP-dependent RNA hel 92.3 1.2 2.6E-05 44.1 10.3 74 162-246 257-334 (572)
479 TIGR02788 VirB11 P-type DNA tr 92.3 0.26 5.6E-06 44.6 5.3 43 125-174 141-183 (308)
480 PRK13880 conjugal transfer cou 92.2 0.16 3.6E-06 50.6 4.2 46 129-182 176-221 (636)
481 PRK10263 DNA translocase FtsK; 92.2 1.2 2.7E-05 47.2 10.5 26 129-154 1011-1036(1355)
482 TIGR03345 VI_ClpV1 type VI sec 92.2 0.8 1.7E-05 47.4 9.2 17 130-146 598-614 (852)
483 TIGR00643 recG ATP-dependent D 92.1 1.7 3.8E-05 43.5 11.4 79 162-249 448-538 (630)
484 COG1221 PspF Transcriptional r 92.1 0.98 2.1E-05 42.1 8.8 67 237-303 173-251 (403)
485 COG2874 FlaH Predicted ATPases 92.1 1.6 3.6E-05 36.9 9.2 44 129-178 29-75 (235)
486 PRK13876 conjugal transfer cou 92.1 0.15 3.3E-06 50.8 3.8 48 129-184 145-192 (663)
487 CHL00095 clpC Clp protease ATP 92.0 1 2.2E-05 46.6 9.8 21 129-149 201-221 (821)
488 PF12775 AAA_7: P-loop contain 92.0 0.11 2.4E-06 46.1 2.5 21 125-145 30-50 (272)
489 PRK05917 DNA polymerase III su 92.0 4 8.7E-05 36.5 12.3 42 235-277 93-134 (290)
490 TIGR00767 rho transcription te 92.0 0.9 2E-05 42.4 8.4 27 126-153 166-192 (415)
491 CHL00095 clpC Clp protease ATP 91.9 0.67 1.4E-05 47.9 8.4 17 130-146 541-557 (821)
492 PF13555 AAA_29: P-loop contai 91.9 0.15 3.2E-06 34.1 2.4 18 128-145 23-40 (62)
493 PRK13822 conjugal transfer cou 91.8 0.24 5.2E-06 49.3 4.8 49 129-185 225-273 (641)
494 PRK08760 replicative DNA helic 91.7 1.6 3.4E-05 42.2 10.1 113 128-250 229-352 (476)
495 COG0467 RAD55 RecA-superfamily 91.7 0.29 6.3E-06 43.1 4.8 53 127-186 22-74 (260)
496 TIGR03743 SXT_TraD conjugative 91.7 0.41 8.9E-06 47.7 6.3 54 127-186 175-230 (634)
497 cd03276 ABC_SMC6_euk Eukaryoti 91.6 3.2 7E-05 34.8 10.9 47 236-282 130-179 (198)
498 KOG2543|consensus 91.6 4.5 9.8E-05 37.3 12.1 63 237-300 115-179 (438)
499 cd03247 ABCC_cytochrome_bd The 91.5 2.6 5.6E-05 34.6 10.1 41 235-276 114-154 (178)
500 cd00267 ABC_ATPase ABC (ATP-bi 91.5 1.8 3.9E-05 34.6 9.0 105 127-285 24-146 (157)
No 1
>KOG0338|consensus
Probab=100.00 E-value=3.6e-56 Score=399.04 Aligned_cols=243 Identities=66% Similarity=1.001 Sum_probs=233.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.+|+|+..+++++..+||..|||+|..+||.++.|+|++.||.||||||.+|++|+++.++.++......|||||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||+||.|++.+.++++.|+++.+++++||.+.+.|...++.+|||+|+|||+|.+|+.+.+.|++.++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
++.+|..+|..|++.|++++|+++||||++..+..++...|++|+.|++++...++..++|.|+++....+.++-..|-.
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777666666665
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
|+.
T Consensus 420 l~~ 422 (691)
T KOG0338|consen 420 LIT 422 (691)
T ss_pred HHH
Confidence 554
No 2
>KOG0330|consensus
Probab=100.00 E-value=3.2e-50 Score=350.56 Aligned_cols=242 Identities=44% Similarity=0.635 Sum_probs=226.7
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
....+|.++++.+.+++++...|+..||++|+++||.++.|+|+|+.|.||||||.+|++|+++.|+..+ ..++++|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---~~~~~lV 134 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---KLFFALV 134 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---CCceEEE
Confidence 4457899999999999999999999999999999999999999999999999999999999999998755 3589999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
++||||||.|+...+..++..++++++.+.||.....+...+...|+|+|||||+|++++.+.+.+++.+++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcch-hhHHHH
Q psy3143 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-VRLYNV 326 (337)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~-~~~~~~ 326 (337)
+++++.|...+..|++.++..+|+++||||+|..+..+....+++|+.|.+.....+++++.|+|+++...++ .....+
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998644 444555
Q ss_pred HHHhhh
Q psy3143 327 LGLMLL 332 (337)
Q Consensus 327 L~~ll~ 332 (337)
|+++..
T Consensus 295 l~e~~g 300 (476)
T KOG0330|consen 295 LNELAG 300 (476)
T ss_pred HHhhcC
Confidence 555443
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-45 Score=349.38 Aligned_cols=239 Identities=40% Similarity=0.618 Sum_probs=219.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|++++|++.+++++.++||..|||+|.++||.++.|+|+++.|+||||||++|++|+++.+.........+ +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECC
Confidence 6799999999999999999999999999999999999999999999999999999999999975321111112 999999
Q ss_pred CHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||||.|+++.+..++.+. ++++.+++||.+...+...+..+++|+|||||+|++++.+. .+.++.++++|+||||+|
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhh
Confidence 9999999999999999998 79999999999999999888888999999999999999885 889999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc--ccCCeeEEEEEecCcchhhHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE--VALNLRQEFVSFSNIDEVRLYNVL 327 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~--~~~~i~q~~~~~~~~~~~~~~~~L 327 (337)
+++||...+..|+..++..+|+++||||+|+.+..+...++++|+.|.+..... +...|.|+|+.+...+ .|+..|
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L 264 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELL 264 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999986655 7899999999999742 588888
Q ss_pred HHhhhc
Q psy3143 328 GLMLLR 333 (337)
Q Consensus 328 ~~ll~~ 333 (337)
..+|..
T Consensus 265 ~~ll~~ 270 (513)
T COG0513 265 LKLLKD 270 (513)
T ss_pred HHHHhc
Confidence 888864
No 4
>KOG0331|consensus
Probab=100.00 E-value=1.4e-45 Score=340.24 Aligned_cols=237 Identities=39% Similarity=0.557 Sum_probs=216.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcC---CCCCCCeeEEEE
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK---PRDDQNTRVLVL 168 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~~~~lil 168 (337)
.|..++|++.+..+++..||..|||||.+.||.++.|+|++..|.||||||++|++|++.++... .....+|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999752 123458899999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||||||.|+...+..++....++..+++||.....|...++++++|+|+|||+|.+++.. +.+.|+.+.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987 488999999999999999
Q ss_pred cccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc--cccCCeeEEEEEecCcchhhHHH
Q psy3143 249 MLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH--EVALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~--~~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
|++++|.++++.|+..+ +..+|++++|||+|..+..++..|+.+|..|.+.... ...-+|.|....|+. ..|..
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~---~~K~~ 327 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE---TAKLR 327 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH---HHHHH
Confidence 99999999999999999 5566899999999999999999999999999998764 445789999999986 45555
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..+|+
T Consensus 328 ~l~~lL~ 334 (519)
T KOG0331|consen 328 KLGKLLE 334 (519)
T ss_pred HHHHHHH
Confidence 5555553
No 5
>KOG0343|consensus
Probab=100.00 E-value=3.5e-45 Score=331.19 Aligned_cols=238 Identities=38% Similarity=0.599 Sum_probs=218.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-CCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDD-QNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~lil 168 (337)
...|++++|+.+.+++|+..+|..||.+|.++||.++.|+|++..|.||||||+||++|++++|+...+.. .|.-||||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999998776654 36779999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
.|||+||.|++.++.++++++.+..++++||.........+.. .+|+|||||+|++|+..++.++.+++.++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 9999999999999999999999999999999998876665554 699999999999999998899999999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC--ccccCCeeEEEEEecCcchhhHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~--~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|+++||...+..|+..+|..+|+++||||-+..+..+++..+++|++|-+... ..++.++.|+|+.|.-. +|+.+
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~---~Ki~~ 303 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLE---DKIDM 303 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehh---hHHHH
Confidence 99999999999999999999999999999999999999999999999998744 46778999999999985 66666
Q ss_pred HHHhh
Q psy3143 327 LGLML 331 (337)
Q Consensus 327 L~~ll 331 (337)
|-..+
T Consensus 304 L~sFI 308 (758)
T KOG0343|consen 304 LWSFI 308 (758)
T ss_pred HHHHH
Confidence 65554
No 6
>KOG0345|consensus
Probab=100.00 E-value=5.4e-44 Score=318.25 Aligned_cols=244 Identities=36% Similarity=0.553 Sum_probs=218.5
Q ss_pred CccccCC--CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCe--eEE
Q psy3143 91 SSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT--RVL 166 (337)
Q Consensus 91 ~~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~--~~l 166 (337)
.+|++++ |++++++++..+||..+||+|..+||.++.++||++.|+||||||+||++|+++.++.+....++. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566655 569999999999999999999999999999999999999999999999999999997766655544 799
Q ss_pred EEcCCHHHHHHHHHHHHHHhhc-cCcEEEEEeCCccHHHHHH-HHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEE
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQES-VLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVL 243 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~~-~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iVi 243 (337)
||+||||||.||.+++..+... .++.+.+++||........ ..+.+++|+|||||+|.+++++. ..+++.+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988876 6888999999988776554 44577899999999999999873 3456779999999
Q ss_pred ecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc--ccCCeeEEEEEecCcchh
Q psy3143 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE--VALNLRQEFVSFSNIDEV 321 (337)
Q Consensus 244 DEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~--~~~~i~q~~~~~~~~~~~ 321 (337)
||||+++++||...+..|+..+|+.+++=+||||.+.++..++..+++||+.|.|...+. ++..+.-+|+.|.. .
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---~ 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---D 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH---H
Confidence 999999999999999999999999999999999999999999999999999999988876 78889999999998 5
Q ss_pred hHHHHHHHhhhc---CCCC
Q psy3143 322 RLYNVLGLMLLR---ENCL 337 (337)
Q Consensus 322 ~~~~~L~~ll~~---~~~~ 337 (337)
+|+..|-++|++ ++||
T Consensus 241 eK~~~lv~~L~~~~~kK~i 259 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCI 259 (567)
T ss_pred HHHHHHHHHHhccccccEE
Confidence 899999999987 5554
No 7
>KOG0346|consensus
Probab=100.00 E-value=4.2e-44 Score=316.49 Aligned_cols=238 Identities=35% Similarity=0.512 Sum_probs=210.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC---CCCCeeEEE
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR---DDQNTRVLV 167 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~---~~~~~~~li 167 (337)
.+|++++|++++++++.+.||.+||-+|+.|||.++.|+|+++.|.||||||++|++|+++.++.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999986543 345889999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccC--cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
++||+|||.|+++++.++..++. +++.-+....+.......+...|+|+|+||++++.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999887764 4555555566666666778888999999999999999886446789999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccc-cCCeeEEEEEecCcchhhHH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEV-ALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~-~~~i~q~~~~~~~~~~~~~~ 324 (337)
||.|+..||...+..+.+.+|+.+|.++||||+++++..+-..++++|+++...+.+.. +..+.||++.|... +|+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~---DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE---DKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc---hhH
Confidence 99999999999999999999999999999999999999999999999999998776654 47799999999964 565
Q ss_pred HHHHHhh
Q psy3143 325 NVLGLML 331 (337)
Q Consensus 325 ~~L~~ll 331 (337)
.+|..||
T Consensus 256 lllyall 262 (569)
T KOG0346|consen 256 LLLYALL 262 (569)
T ss_pred HHHHHHH
Confidence 5555544
No 8
>KOG0328|consensus
Probab=100.00 E-value=8.6e-44 Score=298.48 Aligned_cols=246 Identities=33% Similarity=0.494 Sum_probs=225.5
Q ss_pred ccCCCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC
Q psy3143 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDD 160 (337)
Q Consensus 81 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~ 160 (337)
+.........++|+++||+.++++++...||.+|+.+|+.|+++++.|+|+++.|..|+|||.+|.+.+++.+.-..
T Consensus 17 feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--- 93 (400)
T KOG0328|consen 17 FETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--- 93 (400)
T ss_pred EeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---
Confidence 34455566778999999999999999999999999999999999999999999999999999999999888763222
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
+..++||+.|||+||.|+.+++..++.+.++.+..+.||.+.....+.+..+.+++.+|||++++++.+. .+..+.+++
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkm 172 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKM 172 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeE
Confidence 3567999999999999999999999999999999999999998888888899999999999999999774 778899999
Q ss_pred EEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcch
Q psy3143 241 LVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320 (337)
Q Consensus 241 iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~ 320 (337)
+|+||||.|++.+|..++..+++++|+..|++++|||+|.++.+....|+.+|+.|.+...+.+..+|+|+|+.++.+
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~E-- 250 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKE-- 250 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred hhHHHHHHHhhh
Q psy3143 321 VRLYNVLGLMLL 332 (337)
Q Consensus 321 ~~~~~~L~~ll~ 332 (337)
+=|+..|..|+.
T Consensus 251 ewKfdtLcdLYd 262 (400)
T KOG0328|consen 251 EWKFDTLCDLYD 262 (400)
T ss_pred hhhHhHHHHHhh
Confidence 348888877763
No 9
>KOG0342|consensus
Probab=100.00 E-value=5.5e-43 Score=313.62 Aligned_cols=240 Identities=41% Similarity=0.604 Sum_probs=216.9
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVLV 167 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~li 167 (337)
....|.++.|++..+++++.+||..+|++|..+++.++.|+|+++.|.||+|||+||++|+++.+++.... .++..+||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999765433 34678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
++|||+||.|++.+++.+.+++ ++.+.+++||.+.......+..+++|+|+|||+|++|+++.+.+.+.+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999998 999999999999998888888899999999999999999998888899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCC-CeEEEeCCCc--cccCCeeEEEEEecCcchhhH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNH--EVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-p~~i~~~~~~--~~~~~i~q~~~~~~~~~~~~~ 323 (337)
|++++.||...+..|++.++..+|+++||||.++.+.+++...++. |+.|.+.... .+...+.|-|+.+.... +
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~---~ 316 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS---R 316 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc---h
Confidence 9999999999999999999999999999999999999999976664 9999887754 45688999999998854 3
Q ss_pred HHHHHHhh
Q psy3143 324 YNVLGLML 331 (337)
Q Consensus 324 ~~~L~~ll 331 (337)
+..|-.+|
T Consensus 317 f~ll~~~L 324 (543)
T KOG0342|consen 317 FSLLYTFL 324 (543)
T ss_pred HHHHHHHH
Confidence 44444444
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-40 Score=314.15 Aligned_cols=240 Identities=35% Similarity=0.502 Sum_probs=214.3
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC----CCCeeE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD----DQNTRV 165 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~ 165 (337)
..+|++++|++.++++|..+||..||++|.++||.++.|+|++++||||||||++|++|+++.++..... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999998754321 236799
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|||+||++||.|+++.+..+....++.+..++||.....+...+..+++|+||||++|++++.+ +.+.++.+++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEec
Confidence 9999999999999999999999999999999999988888888888899999999999999876 477899999999999
Q ss_pred ccccccccHHHHHHHHHHHcCC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||+|++.+|...+..+++.++. ..|.++||||++..+..+...++.+|..+.+.........+.|.++++.. ..|
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~---~~k 242 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN---EEK 242 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH---HHH
Confidence 9999999999999999998874 56789999999999999999999999999988777777788888876654 567
Q ss_pred HHHHHHhhhc
Q psy3143 324 YNVLGLMLLR 333 (337)
Q Consensus 324 ~~~L~~ll~~ 333 (337)
...|..++..
T Consensus 243 ~~~l~~ll~~ 252 (423)
T PRK04837 243 MRLLQTLIEE 252 (423)
T ss_pred HHHHHHHHHh
Confidence 7778777754
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=8.7e-41 Score=322.12 Aligned_cols=240 Identities=35% Similarity=0.521 Sum_probs=211.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRV 165 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~ 165 (337)
....+|.++++++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|++..+.... ....++++
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 3457899999999999999999999999999999999999999999999999999999999998886432 12347889
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|||+|||+||.|+...+..++...++++.+++||.....+...+..+++|+|+||++|.+++... ...++++++|||||
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViDE 285 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVLDE 285 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEeeh
Confidence 99999999999999999999988899999999999888888888888999999999999999764 66799999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCC-CCeEEEeCCCc-cccCCeeEEEEEecCcchhhH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLT-RPVRVFVDNNH-EVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~p~~i~~~~~~-~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||+|++++|..++..|+..+++.+|+++||||+|..+..+...++. +|+.+.++... ....++.|.+..+... +|
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~---~k 362 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH---EK 362 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---hH
Confidence 9999999999999999999999999999999999999999988875 68888887654 3346789988887763 45
Q ss_pred HHHHHHhh
Q psy3143 324 YNVLGLML 331 (337)
Q Consensus 324 ~~~L~~ll 331 (337)
...|..+|
T Consensus 363 ~~~L~~ll 370 (545)
T PTZ00110 363 RGKLKMLL 370 (545)
T ss_pred HHHHHHHH
Confidence 55555555
No 12
>KOG0339|consensus
Probab=100.00 E-value=1.6e-41 Score=304.70 Aligned_cols=241 Identities=35% Similarity=0.538 Sum_probs=223.6
Q ss_pred CCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCC
Q psy3143 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQN 162 (337)
Q Consensus 85 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~ 162 (337)
.|+...++|+.++++..|+.++++..|.+||++|.+++|.+++|++++..|.||||||.+|+.|++.++...+ ..+.+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 4566778999999999999999999999999999999999999999999999999999999999999987544 23468
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEE
Q psy3143 163 TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242 (337)
Q Consensus 163 ~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iV 242 (337)
|..||++|||+||.|++..++++++..++++++++||.+...|...++.++.|+|||||||++++.. +..++.++.|||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 478899999999
Q ss_pred EecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 243 iDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
|||||+|+++||.++++.|.....+.+|+|+||||++..+..+++.+|.+|+.+.+.........|.|.+..|.+. ..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~--~~ 453 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE--EK 453 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--HH
Confidence 9999999999999999999999999999999999999999999999999999999998888889999999988886 45
Q ss_pred HHHHHH
Q psy3143 323 LYNVLG 328 (337)
Q Consensus 323 ~~~~L~ 328 (337)
|+.-|-
T Consensus 454 Kl~wl~ 459 (731)
T KOG0339|consen 454 KLNWLL 459 (731)
T ss_pred HHHHHH
Confidence 554443
No 13
>KOG0348|consensus
Probab=100.00 E-value=7e-42 Score=308.80 Aligned_cols=242 Identities=36% Similarity=0.540 Sum_probs=208.7
Q ss_pred CcCCccccCCCCHHHHHHHH-hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC---CCCCCe
Q psy3143 88 EENSSFHQMNLSRPLLKAIG-ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP---RDDQNT 163 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~-~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~~ 163 (337)
.....|..+||++.++..|. .+++..||.+|+++||.++.|+|++|.++||||||++|++|+++.|..-. +...|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 44568999999999999996 57999999999999999999999999999999999999999999996433 234588
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iV 242 (337)
-+|||+||||||.|+++++.++.+.. .+.-+.++||...+.....++.+++|+|+|||+|++++.++..+.++.++|||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999988765 45568889999999889999999999999999999999999999999999999
Q ss_pred EecccccccccHHHHHHHHHHHc-------------CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC--------
Q psy3143 243 LDEADRMLDEHFASQMKEIIRLC-------------SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN-------- 301 (337)
Q Consensus 243 iDEad~l~~~~~~~~~~~i~~~~-------------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~-------- 301 (337)
+||||++++.||...+..|++.+ ++..|.+++|||+++.+.++....+++|+.|-.+..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999998766 223688999999999999999999999999983321
Q ss_pred -----------------ccccCCeeEEEEEecCcchhhHHHHHHHhhh
Q psy3143 302 -----------------HEVALNLRQEFVSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 302 -----------------~~~~~~i~q~~~~~~~~~~~~~~~~L~~ll~ 332 (337)
-..+..+.|.|+.|.+. =++-.|-.+|+
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~ 417 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK---LRLVALAALLL 417 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCc---hhHHHHHHHHH
Confidence 12334678999998873 34445555554
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-40 Score=313.41 Aligned_cols=239 Identities=36% Similarity=0.585 Sum_probs=214.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC---CCCeeEEEE
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD---DQNTRVLVL 168 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~lil 168 (337)
+|++++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.+...... ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998643321 234689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++||.|+.+.+..+....++.+..++|+.....+...+...++|+||||++|++++... .+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHH
Confidence 99999999999999999999999999999999988877778888999999999999988763 66799999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|++.+|...+..++..++...|+++||||+++.+..++..++.+|..+.+.........+.|+++.+.. ..+..+|.
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~ 237 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK---KRKRELLS 237 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777777889998887765 46677777
Q ss_pred HhhhcC
Q psy3143 329 LMLLRE 334 (337)
Q Consensus 329 ~ll~~~ 334 (337)
.++..+
T Consensus 238 ~l~~~~ 243 (456)
T PRK10590 238 QMIGKG 243 (456)
T ss_pred HHHHcC
Confidence 777543
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.6e-40 Score=316.77 Aligned_cols=240 Identities=33% Similarity=0.455 Sum_probs=212.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC----CCCCCe
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP----RDDQNT 163 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~~ 163 (337)
....+|.+++|++.++++|...||..||++|.++||.++.|+|++++||||||||++|++|++..++... ....++
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 4567899999999999999999999999999999999999999999999999999999999998875321 123578
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
++|||+|||+||.|+...++.+.+..++++..++||.....+...+..+++|+|+||++|.+++.+. .+.++++++|||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lVi 276 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVL 276 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEEe
Confidence 9999999999999999999999988889999999998888777778888999999999999999775 677999999999
Q ss_pred ecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhH
Q psy3143 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 244 DEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||||+|++.+|...+..++..++ ..|+++||||+++.+..+...++.+|..+.++........+.|.++++... +|
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~---~k 352 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK---QK 352 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch---hH
Confidence 99999999999999999998885 679999999999999999999999999999987777677899999988764 44
Q ss_pred HHHHHHhhh
Q psy3143 324 YNVLGLMLL 332 (337)
Q Consensus 324 ~~~L~~ll~ 332 (337)
...|..+|.
T Consensus 353 ~~~l~~~l~ 361 (518)
T PLN00206 353 KQKLFDILK 361 (518)
T ss_pred HHHHHHHHH
Confidence 455555553
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-40 Score=319.66 Aligned_cols=240 Identities=36% Similarity=0.556 Sum_probs=214.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC----CCCCeeEE
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR----DDQNTRVL 166 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~l 166 (337)
.+|.+++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.++.... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999864321 12257999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
||+||++||.|+++.+..++...++.+..++|+.....+...+...++|+|+||++|++++.+...+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999888888888889999999999999997765677899999999999
Q ss_pred cccccccHHHHHHHHHHHcCC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~ 324 (337)
|+|++.+|...+..+++.++. .+|+++||||++..+..+...++.+|..+.+.........+.|.++.+.. ..|.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD---EEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH---HHHH
Confidence 999999999999999998876 78999999999999999999999999988887766677788998887654 5677
Q ss_pred HHHHHhhhc
Q psy3143 325 NVLGLMLLR 333 (337)
Q Consensus 325 ~~L~~ll~~ 333 (337)
..|..+|..
T Consensus 246 ~~L~~ll~~ 254 (572)
T PRK04537 246 TLLLGLLSR 254 (572)
T ss_pred HHHHHHHhc
Confidence 777777743
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.8e-40 Score=313.09 Aligned_cols=235 Identities=39% Similarity=0.563 Sum_probs=211.9
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|..++|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+... ...+++||++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~---~~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK---RFRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc---cCCceEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999998422 2356899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+||||++|.+++.+ +.+.++++++||+||||+
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHH
Confidence 99999999999999988765 7899999999999888888888999999999999999876 467799999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|++.+|...+..++..++...|+++||||+++.+..+...++.+|..+.+.... ....+.|+|+.+... +|+..|.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~---~k~~~l~ 234 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD---ERLPALQ 234 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH---HHHHHHH
Confidence 999999999999999999999999999999999999999999999999986654 345699999988874 5777787
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.+|.
T Consensus 235 ~ll~ 238 (460)
T PRK11776 235 RLLL 238 (460)
T ss_pred HHHH
Confidence 7774
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.8e-40 Score=319.35 Aligned_cols=236 Identities=39% Similarity=0.578 Sum_probs=213.5
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.+++|++.++++|.++||..|+++|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---cCCCeEEEEe
Confidence 4579999999999999999999999999999999999999999999999999999999999987432 2357899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
||++||.|++..+..+.... ++.+..++||.....+...+..+++|+|+||++|.+++.+ +.+.++++++|||||||.
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHH
Confidence 99999999999999987765 7899999999998888888888899999999999999976 467799999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|+.++|...+..++..++...|+++||||+|+.+..+...|+.+|..|.+.........+.|.|+.+.. .+|...|.
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~~~L~ 237 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALV 237 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999999988777777889999988776 46666777
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.+|.
T Consensus 238 ~~L~ 241 (629)
T PRK11634 238 RFLE 241 (629)
T ss_pred HHHH
Confidence 6664
No 19
>KOG0340|consensus
Probab=100.00 E-value=5.6e-41 Score=289.64 Aligned_cols=238 Identities=39% Similarity=0.557 Sum_probs=213.7
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+.+||++++.+.|+++|+..|||+|..|||.++.|+|++.||.||||||++|.+|+++.|...+ .+..++|+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP---~giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP---YGIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC---CcceEEEe
Confidence 356899999999999999999999999999999999999999999999999999999999999985433 47789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC---CCCCCccEEEEec
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS---FSLSDIEVLVLDE 245 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~l~~~~~iViDE 245 (337)
+|||+||.|+.+.|..+++..++++++++||+..-.+...+...|||+|+|||+|..++.+++. ..+.+++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999987633 3488999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCC--CeEEEeCCCccccCCeeEEEEEecCcchhhH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~ 323 (337)
||+|+...|...+..+.+.+|..+|.++||||+++.+.++..-..++ +....+.+...++..+.|.|+.|+.. -|
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~---vk 238 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID---VK 238 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh---hh
Confidence 99999999999999999999999999999999999999988766665 45555656677889999999999873 55
Q ss_pred HHHHHHhhh
Q psy3143 324 YNVLGLMLL 332 (337)
Q Consensus 324 ~~~L~~ll~ 332 (337)
-.+|-.+|+
T Consensus 239 daYLv~~Lr 247 (442)
T KOG0340|consen 239 DAYLVHLLR 247 (442)
T ss_pred HHHHHHHHh
Confidence 566666664
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3e-39 Score=305.74 Aligned_cols=239 Identities=40% Similarity=0.603 Sum_probs=215.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~lil~P 170 (337)
+|++++|++.++++|..+||..|+++|.++++.++.|+|++++||||+|||++|++|+++.+...+.. ..++++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999998643322 23578999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
|++||.|+++.+..++...++.+..++|+.....+...+..+++|+||||++|++++.+ ..+.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999998888888888899999999999999876 46778999999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCch-hHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTD-AVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
+++|...+..+...++...|+++||||++. .+..+...++.+|..+.+.........+.|.++.++.. ..|...|..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL--EHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH--HHHHHHHHH
Confidence 999999999999999989999999999985 57888888999999999888777778899988877653 578888988
Q ss_pred hhhc
Q psy3143 330 MLLR 333 (337)
Q Consensus 330 ll~~ 333 (337)
++..
T Consensus 239 l~~~ 242 (434)
T PRK11192 239 LLKQ 242 (434)
T ss_pred HHhc
Confidence 8864
No 21
>KOG0336|consensus
Probab=100.00 E-value=1.9e-40 Score=291.10 Aligned_cols=242 Identities=32% Similarity=0.481 Sum_probs=212.7
Q ss_pred CCCcCCcccc-CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC---CCC
Q psy3143 86 PVEENSSFHQ-MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR---DDQ 161 (337)
Q Consensus 86 ~~~~~~~f~~-~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~---~~~ 161 (337)
.+....+|++ ++..+++++++++.||.+|||+|.+|||.+++|+|++..|.||+|||++|++|-+.++...+. ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 3444566776 678999999999999999999999999999999999999999999999999998887754432 235
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++|+++|||+||.|+.-...++. +.+.+..+++||.+...+...++.+.+|+++||++|.++... +.++++++.|+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 7899999999999999987777654 567888899999999999999999999999999999998766 48899999999
Q ss_pred EEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcccc-CCeeEEEEEecCcch
Q psy3143 242 VLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA-LNLRQEFVSFSNIDE 320 (337)
Q Consensus 242 ViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~-~~i~q~~~~~~~~~~ 320 (337)
|+||||+|++++|.+++..|+-...+.+|+++.|||+|+.+.+++..|+++|..+.++....+. .+++|.++....
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d--- 448 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTD--- 448 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEeccc---
Confidence 9999999999999999999999999999999999999999999999999999999999888765 668888854443
Q ss_pred hhHHHHHHHhhh
Q psy3143 321 VRLYNVLGLMLL 332 (337)
Q Consensus 321 ~~~~~~L~~ll~ 332 (337)
.+|+++...++.
T Consensus 449 ~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 449 SEKLEIVQFFVA 460 (629)
T ss_pred HHHHHHHHHHHH
Confidence 578877776653
No 22
>KOG0333|consensus
Probab=100.00 E-value=1.3e-39 Score=293.65 Aligned_cols=244 Identities=34% Similarity=0.468 Sum_probs=222.4
Q ss_pred CCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC------CC
Q psy3143 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP------RD 159 (337)
Q Consensus 86 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~ 159 (337)
-+....+|++.+++..+++.+...||..|+|+|.+++|..+.++|+|..|.||||||++|++|++.++...+ ..
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 345567899999999999999999999999999999999999999999999999999999999999986555 22
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 160 DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 160 ~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
..+|.++|+.|||+||.|+.....++++..++++..++||.+...+.-.+..+|+|+|+|||+|.+.+.+. .+.++++.
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qct 398 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCT 398 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCc
Confidence 34899999999999999999999999999999999999999999988889999999999999999999884 67799999
Q ss_pred EEEEecccccccccHHHHHHHHHHHcCC-------------------------CCeEEEEeecCchhHHHHHHhhCCCCe
Q psy3143 240 VLVLDEADRMLDEHFASQMKEIIRLCSR-------------------------TRQTMLFSATMTDAVNDLVSVSLTRPV 294 (337)
Q Consensus 240 ~iViDEad~l~~~~~~~~~~~i~~~~~~-------------------------~~q~i~~SAT~~~~~~~~~~~~~~~p~ 294 (337)
+||+||||+|++++|.+.+..++.+++. -+|+++||||+|+.+..+++.||++|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999988752 169999999999999999999999999
Q ss_pred EEEeCCCccccCCeeEEEEEecCcchhhHHHHHHHhhhc
Q psy3143 295 RVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLR 333 (337)
Q Consensus 295 ~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ll~~ 333 (337)
.+.++..+...+.+.|.++.+... .|+..|.++|.+
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed---~k~kkL~eil~~ 514 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSED---EKRKKLIEILES 514 (673)
T ss_pred EEEeccCCCCccchheEEEEecch---HHHHHHHHHHHh
Confidence 999999999999999999998885 456667776644
No 23
>KOG0326|consensus
Probab=100.00 E-value=6.7e-41 Score=285.48 Aligned_cols=236 Identities=32% Similarity=0.518 Sum_probs=217.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
...|+++.|..+++..+...||.+|+|+|..+||.++.|+|+++.|..|+|||.+|.+|+++.+... ....+++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~---~~~IQ~~ilV 160 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK---KNVIQAIILV 160 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc---ccceeEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999998422 2456799999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||+||.|+.+.++.+++.+++.+....||++.....-.+...++++|+|||++++++.. +.-.++.+.++|+||||.|
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKL 239 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhh
Confidence 999999999999999999999999999999999888878888899999999999999876 3667999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
++..|...+..++..+|+.+|++++|||+|-.+..++.++|++|..|.. ..+.++.++.|||-++.+ .+|..-|+.
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e---~qKvhCLnt 315 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEE---RQKVHCLNT 315 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeech---hhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999997 567888999999999988 577777777
Q ss_pred hhhc
Q psy3143 330 MLLR 333 (337)
Q Consensus 330 ll~~ 333 (337)
|+.+
T Consensus 316 Lfsk 319 (459)
T KOG0326|consen 316 LFSK 319 (459)
T ss_pred HHHH
Confidence 6644
No 24
>KOG0335|consensus
Probab=100.00 E-value=4.3e-40 Score=299.20 Aligned_cols=238 Identities=34% Similarity=0.529 Sum_probs=216.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-----C--CCe
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-----D--QNT 163 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-----~--~~~ 163 (337)
..|.+-.+.+.+..++...++..|||+|+.+||.+..|+++++||+||||||.+|++|++..++..... . ..|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 388888999999999999999999999999999999999999999999999999999999999755321 1 248
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
++||++|||+||.|++...+++.....++++..+|+.....+...+.++++|+|||||+|.+++.. +.+.|.+++|+||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998876 5888999999999
Q ss_pred eccccccc-ccHHHHHHHHHHHcC----CCCeEEEEeecCchhHHHHHHhhCCC-CeEEEeCCCccccCCeeEEEEEecC
Q psy3143 244 DEADRMLD-EHFASQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 244 DEad~l~~-~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~-p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
||||+|++ ++|.+.|+.|+.... ..+|+++||||+|..+..++..|+.+ .+.+.+........+|.|.+++|..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999999 999999999998774 37899999999999999999999886 8899998889999999999999998
Q ss_pred cchhhHHHHHHHhhh
Q psy3143 318 IDEVRLYNVLGLMLL 332 (337)
Q Consensus 318 ~~~~~~~~~L~~ll~ 332 (337)
. +|...|..+|.
T Consensus 313 ~---~kr~~Lldll~ 324 (482)
T KOG0335|consen 313 M---EKRSKLLDLLN 324 (482)
T ss_pred h---hhHHHHHHHhh
Confidence 5 55556666664
No 25
>KOG0337|consensus
Probab=100.00 E-value=3.8e-40 Score=290.07 Aligned_cols=238 Identities=38% Similarity=0.579 Sum_probs=222.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
...|..+||+..+++++.+.||+.|||+|++.+|.++.+++++..|.||||||.||++|+++.+.... ..+.|++++.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999996544 5688999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|||+||.|..+..+.++++++++.++++||-+...+...+..++|||++|||+++.+.... .+.|+++.|||+||||.+
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999998766554 578999999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
+.+||..++..++..++..+|+++||||+|..+..+.+..+.+|+.|+++-+......+...|.++.+ .+|...|..
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~---a~K~aaLl~ 253 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK---AEKEAALLS 253 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888999999999988 478888887
Q ss_pred hhhc
Q psy3143 330 MLLR 333 (337)
Q Consensus 330 ll~~ 333 (337)
++.+
T Consensus 254 il~~ 257 (529)
T KOG0337|consen 254 ILGG 257 (529)
T ss_pred HHhc
Confidence 7754
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.9e-38 Score=298.74 Aligned_cols=244 Identities=40% Similarity=0.588 Sum_probs=212.5
Q ss_pred CCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC----CC
Q psy3143 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD----DQ 161 (337)
Q Consensus 86 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~----~~ 161 (337)
+......|.+++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.++..... ..
T Consensus 82 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~ 161 (475)
T PRK01297 82 PQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMG 161 (475)
T ss_pred CccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccC
Confidence 34445689999999999999999999999999999999999999999999999999999999999998754322 12
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
.+++|||+||++||.|+.+.++.+.+..++.+..++||.....+...+ ...++|+|+||++|+.++..+ ...++++++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~ 240 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEV 240 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCce
Confidence 578999999999999999999999998899999999998776665554 456899999999999988664 567899999
Q ss_pred EEEecccccccccHHHHHHHHHHHcCC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 241 LVLDEADRMLDEHFASQMKEIIRLCSR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 241 iViDEad~l~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
|||||||.+++.+|...+..+++.++. ..|++++|||++.++..++..++.+|..+.+........++.|++..+..
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 319 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG- 319 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-
Confidence 999999999999999999999998854 57999999999999999999999999999988777777788888887776
Q ss_pred chhhHHHHHHHhhhc
Q psy3143 319 DEVRLYNVLGLMLLR 333 (337)
Q Consensus 319 ~~~~~~~~L~~ll~~ 333 (337)
.++...|..++..
T Consensus 320 --~~k~~~l~~ll~~ 332 (475)
T PRK01297 320 --SDKYKLLYNLVTQ 332 (475)
T ss_pred --hhHHHHHHHHHHh
Confidence 3567777777754
No 27
>KOG0347|consensus
Probab=100.00 E-value=8.4e-40 Score=296.22 Aligned_cols=219 Identities=37% Similarity=0.551 Sum_probs=183.7
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCC--------
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPR-------- 158 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~-------- 158 (337)
.....|..|+|+..++++|..+||..||+||...+|.+..| .|++..|.||||||+||.||+++.++....
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999999 599999999999999999999996643221
Q ss_pred CCCCe--eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC--CC
Q psy3143 159 DDQNT--RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS--FS 234 (337)
Q Consensus 159 ~~~~~--~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~ 234 (337)
....+ -+||++|||+||+|+.+.+..++.++++++..++||.+...|.+.++..|+|+|+||||||.++..... -.
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 11233 499999999999999999999999999999999999999999999999999999999999999976533 25
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHc-----CCCCeEEEEeecCchhH---------------------HHHHH-
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLC-----SRTRQTMLFSATMTDAV---------------------NDLVS- 287 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-----~~~~q~i~~SAT~~~~~---------------------~~~~~- 287 (337)
+++++|+|+||||+|+..|....+..|++.+ ++.+|+++||||++-.. ..++.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 8899999999999999998777777777665 45789999999997542 22222
Q ss_pred -hhCCCCeEEEeCCCccccC
Q psy3143 288 -VSLTRPVRVFVDNNHEVAL 306 (337)
Q Consensus 288 -~~~~~p~~i~~~~~~~~~~ 306 (337)
-+..+|.+|-+.+...+..
T Consensus 418 ig~~~kpkiiD~t~q~~ta~ 437 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATAS 437 (731)
T ss_pred hCccCCCeeEecCcchhHHH
Confidence 1445678887766655443
No 28
>KOG0334|consensus
Probab=100.00 E-value=5.4e-39 Score=311.03 Aligned_cols=244 Identities=34% Similarity=0.509 Sum_probs=220.1
Q ss_pred CCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC--CCCCee
Q psy3143 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--DDQNTR 164 (337)
Q Consensus 87 ~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 164 (337)
+....+|.+.|++..++..++++||..|++||.+|||+++.|+|||.+|.||||||++|++|++.++...+. .+.||.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 456789999999999999999999999999999999999999999999999999999999999987754432 345899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC--CCCCCCCccEEE
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT--PSFSLSDIEVLV 242 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~~~~iV 242 (337)
+||++|||+||.|++++++.+++.+++++++++||.....+...++++..|+|||||++.+++..+ +..++..+.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999988543 233567777999
Q ss_pred EecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 243 iDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
+||||+|++.+|.+++..|++.+++.+|+++||||+|..++.++...++.|+-|.+.........+.|.+..|... ..
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e--~e 598 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE--NE 598 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc--hH
Confidence 9999999999999999999999999999999999999999999999999999999998888888999999988833 46
Q ss_pred HHHHHHHhhh
Q psy3143 323 LYNVLGLMLL 332 (337)
Q Consensus 323 ~~~~L~~ll~ 332 (337)
|+..|.+||.
T Consensus 599 Kf~kL~eLl~ 608 (997)
T KOG0334|consen 599 KFLKLLELLG 608 (997)
T ss_pred HHHHHHHHHH
Confidence 6666666663
No 29
>KOG0332|consensus
Probab=100.00 E-value=3.9e-38 Score=273.63 Aligned_cols=243 Identities=30% Similarity=0.458 Sum_probs=217.7
Q ss_pred cCCCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCC
Q psy3143 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRD 159 (337)
Q Consensus 82 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~ 159 (337)
++..|..+..+|++|+|+|++++++..|+|.+|+.+|..|+|.++.. +++|..+..|+|||.||.+.++.++. ..
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~ 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PD 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---cc
Confidence 46788999999999999999999999999999999999999999976 59999999999999999999999873 22
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 160 DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 160 ~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
...|.+++|+|||+||.|+.+++.++++++++...+.+.+..... ...+. .+|+|+|||.+.+++..-+.+.+..++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i~--eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKLT--EQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcch--hheeeCCCccHHHHHHHHHhhChhhce
Confidence 347889999999999999999999999999999988887763221 11122 289999999999999886688899999
Q ss_pred EEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 240 VLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 240 ~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
++|+||||.|++ +||.++-.+|.+.+++++|+++||||+...+..++...+++|..+.+..+.....+|+|+|+.|.+.
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch
Confidence 999999999886 5799999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhHHHHHHHhhh
Q psy3143 319 DEVRLYNVLGLMLL 332 (337)
Q Consensus 319 ~~~~~~~~L~~ll~ 332 (337)
.+|+++|..|+.
T Consensus 315 --~~K~~~l~~lyg 326 (477)
T KOG0332|consen 315 --DDKYQALVNLYG 326 (477)
T ss_pred --hhHHHHHHHHHh
Confidence 589999888764
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.4e-36 Score=282.48 Aligned_cols=237 Identities=30% Similarity=0.471 Sum_probs=209.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.++++++.++++|.+.||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+... ..++++||++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999887422 2367899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+.+.+..++...+..+..+.|+.........+..+++|+|+||++|.+++.+. .+.++++++||+||||++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHH
Confidence 9999999999999999888888888889998877777777778899999999999988763 567899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
++.+|...+..+++.++...|++++|||+++.+..+...++.+|..+.+........++.++++.+... ..+...|..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE--EWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877777778899988877653 345555555
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
++.
T Consensus 261 ~~~ 263 (401)
T PTZ00424 261 LYE 263 (401)
T ss_pred HHH
Confidence 553
No 31
>KOG0341|consensus
Probab=100.00 E-value=2.5e-39 Score=282.29 Aligned_cols=240 Identities=35% Similarity=0.530 Sum_probs=211.1
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC-----CCCCC
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP-----RDDQN 162 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~ 162 (337)
....+|.++..+..+++.|++.|+..|||+|.+.+|.+++|||.|..|-||||||++|.+|++...+... ..+.+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 3457899999999999999999999999999999999999999999999999999999999987765322 22348
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHHhhc------cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 163 TRVLVLVPTRELGVQVYQVTRQLAQF------TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 163 ~~~lil~Pt~~La~q~~~~~~~l~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
|-.|||||+|+||.|.+..+..+... ..++..+++||.....+....+.+++|+|+|||+|.+++.. +.++|.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 89999999999999999988887653 34778999999999999999999999999999999999977 477889
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
-++|+++||||+|+++||...++.|+..+...+|+++||||+|..+..+++..+-.|++|+++.-.....++.|.+-++.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988777777777666555
Q ss_pred CcchhhHHHHHHHhh
Q psy3143 317 NIDEVRLYNVLGLML 331 (337)
Q Consensus 317 ~~~~~~~~~~L~~ll 331 (337)
. +-|+-.|.+-|
T Consensus 406 q---EaKiVylLeCL 417 (610)
T KOG0341|consen 406 Q---EAKIVYLLECL 417 (610)
T ss_pred h---hhhhhhHHHHh
Confidence 5 34444444433
No 32
>KOG0327|consensus
Probab=100.00 E-value=2.2e-37 Score=270.69 Aligned_cols=236 Identities=34% Similarity=0.532 Sum_probs=215.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.+++|++.+++.+++.||.+|+.+|+.||..+..|+|+++.+.+|+|||.+|.+++++.+-. ......+|+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---~~ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---SVKETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc---chHHHHHHHhc
Confidence 358999999999999999999999999999999999999999999999999999999999998722 12356799999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH-HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV-LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
|||+||.|+.++...++...+..+..+.||.+....... ....++|+|+|||++..++... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 999999999999999999999999999999988855544 4456899999999999998764 67778899999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
|+..+|..++..|++.++...|++++|||+|.++..+.+.|+++|+.|.+...+.+...|+|+|+.+... .|+..|-
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~---~k~~~l~ 257 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE---EKLDTLC 257 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc---ccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885 4887777
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.+++
T Consensus 258 dl~~ 261 (397)
T KOG0327|consen 258 DLYR 261 (397)
T ss_pred HHHH
Confidence 7765
No 33
>KOG0329|consensus
Probab=100.00 E-value=1.9e-37 Score=256.97 Aligned_cols=239 Identities=34% Similarity=0.586 Sum_probs=214.9
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..+.|.++-|.|++++++..+||.+|+.+|..+||.+..|.|++..|.+|.|||.+|++..++.+- + ......+|++
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie--p-v~g~vsvlvm 116 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--P-VDGQVSVLVM 116 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC--C-CCCeEEEEEE
Confidence 345699999999999999999999999999999999999999999999999999999999999883 2 2235679999
Q ss_pred cCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
|.||+||.|+.+....++++. ++++..++||.+.+.....+.+.|+|+|+|||+++.+.++ +.+++++++++|+||||
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECD 195 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHH
Confidence 999999999999999999886 7899999999999998999999999999999999998877 58899999999999999
Q ss_pred ccccc-cHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc-ccCCeeEEEEEecCcchhhHHH
Q psy3143 248 RMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE-VALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 248 ~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~-~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
.|+.+ ..+..+..|.+..|+..|+++||||++.+++..+++||.+|..|+++.+.. +.-++.|+|+.+..+.+..|+.
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~ 275 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 98875 588899999999999999999999999999999999999999999988754 4567999999999887766665
Q ss_pred HHHHhh
Q psy3143 326 VLGLML 331 (337)
Q Consensus 326 ~L~~ll 331 (337)
-|...|
T Consensus 276 dLLd~L 281 (387)
T KOG0329|consen 276 DLLDVL 281 (387)
T ss_pred hhhhhh
Confidence 555544
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.7e-34 Score=245.86 Aligned_cols=203 Identities=49% Similarity=0.766 Sum_probs=184.3
Q ss_pred cccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 93 f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|+++++++.+.+.+.+.|+..|+++|.++++.+..|+++++++|||+|||++|++|+++.+.... ...+++++|++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCH
Confidence 78899999999999999999999999999999999999999999999999999999999986542 12478999999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
+|+.|+...++.+....++.+..+.|+.........+..+++|+||||+.|.+++.+. ...+.+++++|+||||.+.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhcc
Confidence 9999999999999887889999999998877766667667899999999999988765 467899999999999999988
Q ss_pred cHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEE
Q psy3143 253 HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVF 297 (337)
Q Consensus 253 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~ 297 (337)
++...+..+...++..+|++++|||+++.+..++..++.+|..|.
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 203 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEeC
Confidence 899999999999999999999999999999999999999998763
No 35
>KOG4284|consensus
Probab=100.00 E-value=4.2e-36 Score=276.55 Aligned_cols=240 Identities=29% Similarity=0.432 Sum_probs=213.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
....|+++-|...++..|++.+|..||++|..|||+++.+-|+||.|..|+|||++|.+.+++.+..+ ...+.++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---~~~~q~~Iv 99 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---SSHIQKVIV 99 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---cCcceeEEE
Confidence 34679999999999999999999999999999999999999999999999999999999888887432 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhh-ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+|||++|.|+..++..++. +.++++..++||+........++. ++|+|||||++..++.. +.++.++++++|+||||
T Consensus 100 ~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 100 TPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEAD 177 (980)
T ss_pred ecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHh-cCCCccceeEEEeccHH
Confidence 9999999999999999986 569999999999998877666655 58999999999999877 48899999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcch-----h
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-----V 321 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~-----~ 321 (337)
.|++ ..|...+..|+..+|..+|++.||||.|..+.++...||++|..|..........+|+||++.+.+-.. .
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHH
Confidence 9988 569999999999999999999999999999999999999999999999888889999999987765311 3
Q ss_pred hHHHHHHHhhhc
Q psy3143 322 RLYNVLGLMLLR 333 (337)
Q Consensus 322 ~~~~~L~~ll~~ 333 (337)
.|+..|-+++.+
T Consensus 258 lklq~L~~vf~~ 269 (980)
T KOG4284|consen 258 LKLQKLTHVFKS 269 (980)
T ss_pred HHHHHHHHHHhh
Confidence 367777777643
No 36
>KOG0350|consensus
Probab=100.00 E-value=2.3e-35 Score=264.91 Aligned_cols=226 Identities=34% Similarity=0.528 Sum_probs=187.4
Q ss_pred CccccCCCCHH----------HHHHHHhCCCCCChHHHHHHHHHHh---------CCCCEEEEcCCCCchhHHhHHHHHH
Q psy3143 91 SSFHQMNLSRP----------LLKAIGALNYIYPTPIQAATIPVAL---------LGRDICGCAATGTGKTAAFMLPILE 151 (337)
Q Consensus 91 ~~f~~~~l~~~----------l~~~l~~~~~~~p~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~l~ 151 (337)
..|+.++++.. +..++.++++.+.+|+|..++|+++ .++|++|.||||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 34666665544 4455999999999999999999985 3579999999999999999999999
Q ss_pred HhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcC-C----CEEEECcHHHHHH
Q psy3143 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC-P----DIVIATPGRLLDH 226 (337)
Q Consensus 152 ~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~----~Ilv~Tp~~l~~~ 226 (337)
.+..++ ....|||||+||++|+.|++++|..+...+++.|+...|..+.......+.+. + ||+|+|||||.+|
T Consensus 207 ~L~~R~--v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 207 LLSSRP--VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred HHccCC--ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHh
Confidence 985443 45689999999999999999999999999999999999988887766655533 3 8999999999999
Q ss_pred HhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC----------------------------------CCCeEE
Q psy3143 227 LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS----------------------------------RTRQTM 272 (337)
Q Consensus 227 l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~----------------------------------~~~q~i 272 (337)
+.+.+.++|++++|+||||||+|+++.|..++..++..+. +..+.+
T Consensus 285 l~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL 364 (620)
T KOG0350|consen 285 LNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKL 364 (620)
T ss_pred ccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhh
Confidence 9998999999999999999999999887777665443221 223578
Q ss_pred EEeecCchhHHHHHHhhCCCCeEEEeCC----CccccCCeeEEEEEecCc
Q psy3143 273 LFSATMTDAVNDLVSVSLTRPVRVFVDN----NHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 273 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~----~~~~~~~i~q~~~~~~~~ 318 (337)
++|||++.+...+...-+..|..+.+.. +-..+..+.++++.++..
T Consensus 365 ~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~ 414 (620)
T KOG0350|consen 365 VFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK 414 (620)
T ss_pred hcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc
Confidence 9999999999999999999998777763 445567788888877763
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.6e-31 Score=261.23 Aligned_cols=193 Identities=23% Similarity=0.268 Sum_probs=156.1
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.+++.+.++|.++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... .+.++|||+|||+||.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 388999999999999999999999999999999999999999999999999999998642 3678999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCC---CCCCCCccEEEEeccccccccc
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP---SFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~~~~iViDEad~l~~~~ 253 (337)
|+...++.+. ..++++..+.|+..... ...+...++|+|+||++|...+.... ...++++++|||||||.|.+ .
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~ 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-V 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-c
Confidence 9999999987 45788888888877543 45566678999999999975443211 11278999999999999865 3
Q ss_pred HHHHHHHH-------HHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEE
Q psy3143 254 FASQMKEI-------IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVF 297 (337)
Q Consensus 254 ~~~~~~~i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~ 297 (337)
|...+..+ ....+...|++++|||+++... ++..++..|..+.
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i 222 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV 222 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE
Confidence 44443333 3334567899999999998765 5667777886653
No 38
>KOG0344|consensus
Probab=99.97 E-value=9.4e-31 Score=240.11 Aligned_cols=243 Identities=32% Similarity=0.417 Sum_probs=202.9
Q ss_pred CCcccc----CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC--CCCCe
Q psy3143 90 NSSFHQ----MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--DDQNT 163 (337)
Q Consensus 90 ~~~f~~----~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~ 163 (337)
..+|.+ +.....+++++...+|..|+++|++|+|.++.+++++.|||||||||++|.+|++..+..... ...+.
T Consensus 131 l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl 210 (593)
T KOG0344|consen 131 LLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGL 210 (593)
T ss_pred cccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccce
Confidence 345665 678999999999999999999999999999999999999999999999999999999864432 23478
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHh--hccCcEEEEEeCCccHHH-HHHHHhcCCCEEEECcHHHHHHHhcC-CCCCCCCcc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLA--QFTSVEVALSVGGLEVKV-QESVLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIE 239 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~--~~~~~~v~~~~~~~~~~~-~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~ 239 (337)
+++|+.|||+||.|++..+.++. ..+++++..+........ ........++|+|+||-++..++... ..++++.+.
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~ 290 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVE 290 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheee
Confidence 99999999999999999999998 666666655544321111 11112233589999999999998764 236799999
Q ss_pred EEEEecccccccc-cHHHHHHHHHHHcCC-CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecC
Q psy3143 240 VLVLDEADRMLDE-HFASQMKEIIRLCSR-TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 240 ~iViDEad~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
++|+||||+++.. .|..++..|+..+.. ...+-+||||++..+++++...+.+++.|.++..+.....|.|.++.|.+
T Consensus 291 ~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gs 370 (593)
T KOG0344|consen 291 WLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGS 370 (593)
T ss_pred eEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeec
Confidence 9999999999999 899999999998854 45666899999999999999999999999999999999999999999988
Q ss_pred cchhhHHHHHHHhhhcC
Q psy3143 318 IDEVRLYNVLGLMLLRE 334 (337)
Q Consensus 318 ~~~~~~~~~L~~ll~~~ 334 (337)
. .-|+-.++.++..|
T Consensus 371 e--~~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 371 E--KGKLLALRQLVASG 385 (593)
T ss_pred c--hhHHHHHHHHHhcc
Confidence 6 57777788887665
No 39
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.97 E-value=6.1e-29 Score=205.32 Aligned_cols=165 Identities=37% Similarity=0.593 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
|++|.++++.+..|+++++.||||+|||++|.+|++..+... ...+++|++|+++|+.|+...+..+....++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----CCceEEEEeecccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999988633 2348999999999999999999999888888999
Q ss_pred EEeCCccHH-HHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC--CCCeE
Q psy3143 195 LSVGGLEVK-VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS--RTRQT 271 (337)
Q Consensus 195 ~~~~~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~--~~~q~ 271 (337)
.++++.... .....+..+++|+|+||++|.+++... ...+.++++||+||+|.+....+...+..+...+. .+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG-KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT-SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhcccccc-ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999988755 444555567899999999999999874 33677799999999999988888888888888773 35899
Q ss_pred EEEeecCchhHHH
Q psy3143 272 MLFSATMTDAVND 284 (337)
Q Consensus 272 i~~SAT~~~~~~~ 284 (337)
+++|||++..++.
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999977665
No 40
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=2.8e-28 Score=243.37 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=159.8
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.++++++.+.+.+.+.|+..|+++|.++++. +..|+|+++++|||||||++|.+|+++.++. .++++|||+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----~~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----EGGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----cCCeEEEEeC
Confidence 578899999999999999999999999999986 7899999999999999999999999998753 2568999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++|+.|+++.+..+. ..++++..++|+...... +...++|+|+||+++..++.+. ...++++++||+||+|.+.
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccC
Confidence 9999999999988764 357899999988764321 2345799999999998887653 4458899999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCC
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLT 291 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~ 291 (337)
+.++...+..++..+....|++++|||+++. ..+.. ++.
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~ 190 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLN 190 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhC
Confidence 8888889999998888889999999999863 34333 444
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=1.3e-28 Score=246.32 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=151.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|++++|++.+++.+.+.|+..|+|+|.++++. +..|+|++++||||||||++|.+|++..+. .++++||++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeC
Confidence 478899999999999999999999999999998 778999999999999999999999999884 3668999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++||.|+++.++.+.. .++++..+.|+...... ....++|+||||+++..++.+. ...+.++++||+||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999999997654 47889888887654321 2244699999999999888753 3457899999999999998
Q ss_pred cccHHHHHHHHHHH---cCCCCeEEEEeecCch
Q psy3143 251 DEHFASQMKEIIRL---CSRTRQTMLFSATMTD 280 (337)
Q Consensus 251 ~~~~~~~~~~i~~~---~~~~~q~i~~SAT~~~ 280 (337)
+.++...+..++.. .....|++++|||+++
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC
Confidence 87777776665443 4567899999999986
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=8.1e-28 Score=235.51 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=154.0
Q ss_pred CCCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCe-eEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 109 LNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNT-RVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~-~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.||. |||||.++++.++.|+ ++++++|||||||.++.++++... .....+ ++++++|||+|+.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~----~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE----IGAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc----ccccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 4787 9999999999999998 577789999999997766555321 112234 45557799999999999999998
Q ss_pred hcc-----------------------CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC----------
Q psy3143 187 QFT-----------------------SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF---------- 233 (337)
Q Consensus 187 ~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~---------- 233 (337)
+.+ ++++..++||.....+...+..+++|||||++.+ .+. .+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr-~L~~gYg~~~~~ 161 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSR-LLFSGYGCGFKS 161 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCC-cccccccccccc
Confidence 755 4889999999999999888999999999996544 332 22
Q ss_pred ------CCCCccEEEEecccccccccHHHHHHHHHHHc--CC---CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 234 ------SLSDIEVLVLDEADRMLDEHFASQMKEIIRLC--SR---TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 234 ------~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~--~~---~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
.++++++||||||| ++++|...+..|++.+ ++ ++|+++||||++.++..+...++.+|..+.+....
T Consensus 162 ~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~ 239 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR 239 (844)
T ss_pred ccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccc
Confidence 26889999999999 6789999999999964 33 36999999999999998888888888887776555
Q ss_pred cccCCeeEE
Q psy3143 303 EVALNLRQE 311 (337)
Q Consensus 303 ~~~~~i~q~ 311 (337)
....++.|+
T Consensus 240 l~a~ki~q~ 248 (844)
T TIGR02621 240 LAAKKIVKL 248 (844)
T ss_pred ccccceEEE
Confidence 566677774
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=1.2e-27 Score=245.29 Aligned_cols=200 Identities=19% Similarity=0.162 Sum_probs=155.0
Q ss_pred HHHHhC-CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 104 KAIGAL-NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 104 ~~l~~~-~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
+.+.+. |+ .|+++|..++|.++.|+|++++||||+|||+ |.++++..+.. .++++|||+|||+|+.|++..+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHH
Confidence 344443 55 8999999999999999999999999999996 55555554421 3678999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCccH-----HHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-----
Q psy3143 183 RQLAQFTSVEVALSVGGLEV-----KVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD----- 251 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~-----~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~----- 251 (337)
+.++...++.+..+.|+... ......+. ..++|+|+||++|.+++. .+....+++||+||||+|++
T Consensus 144 ~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 144 EKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccch
Confidence 99998888888877776542 22222333 468999999999999875 34566799999999999986
Q ss_pred ------ccHH-HHHHHHHHHcCC------------------------CCeEEEEeecCchh-HHHHHHhhCCCCeEEEeC
Q psy3143 252 ------EHFA-SQMKEIIRLCSR------------------------TRQTMLFSATMTDA-VNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 252 ------~~~~-~~~~~i~~~~~~------------------------~~q~i~~SAT~~~~-~~~~~~~~~~~p~~i~~~ 299 (337)
.||. ..+..++..++. ..|+++||||+++. +.. .+++++..+.++
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEec
Confidence 5674 566666666543 68999999999875 433 234567777777
Q ss_pred CCccccCCeeEEEEEec
Q psy3143 300 NNHEVALNLRQEFVSFS 316 (337)
Q Consensus 300 ~~~~~~~~i~q~~~~~~ 316 (337)
.......+|.|.|+.+.
T Consensus 298 ~~~~~~rnI~~~yi~~~ 314 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE 314 (1176)
T ss_pred CcccccCCceEEEEEcc
Confidence 77777789999999765
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=8.2e-27 Score=235.86 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=144.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC---CCCeeEEEEcCCHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD---DQNTRVLVLVPTREL 174 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~lil~Pt~~L 174 (337)
+++.+.+.+. .+|..|+++|.++++.++.|+|++++||||||||++|.+|+++.++..... ..+.++|||+||++|
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 4555555544 478999999999999999999999999999999999999999988743221 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC--CCCCccE
Q psy3143 175 GVQVYQVTRQ-------LA----QFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF--SLSDIEV 240 (337)
Q Consensus 175 a~q~~~~~~~-------l~----~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~l~~~~~ 240 (337)
+.|+++.+.. ++ ... ++++...+|+.........+...++|+||||++|..++.+. .+ .++++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999876553 22 122 67889999999888777778888999999999998777543 33 3789999
Q ss_pred EEEecccccccccHHH----HHHHHHHHcCCCCeEEEEeecCch
Q psy3143 241 LVLDEADRMLDEHFAS----QMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 241 iViDEad~l~~~~~~~----~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
|||||||.+.+..+.. .+.++....+...|.|++|||+++
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 9999999998765443 344455555568899999999986
No 45
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=1.9e-26 Score=241.39 Aligned_cols=205 Identities=17% Similarity=0.144 Sum_probs=156.4
Q ss_pred HHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 101 PLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 101 ~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.+.+.+++ .|| .|+++|..++|.++.|+|++++||||+|||++++++++.... .+.++|||+||++|+.|+.
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHH
Confidence 44555655 788 699999999999999999999999999999976666554421 3568999999999999999
Q ss_pred HHHHHHhhcc--CcEEEEEeCCccHHHHHHH---Hh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc--
Q psy3143 180 QVTRQLAQFT--SVEVALSVGGLEVKVQESV---LR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-- 251 (337)
Q Consensus 180 ~~~~~l~~~~--~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-- 251 (337)
..++.++... ++.+..++|+.+...+... +. ..++|+|+||++|.+++.. .. ...+++|||||||+|+.
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MK-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--Hh-hCCCCEEEEECceeccccc
Confidence 9999988765 4667788888876655332 33 3589999999999887654 22 26799999999999986
Q ss_pred ---------ccHHHHHHH----HHH----------------------HcCCCCe-EEEEeecCchhHHHHHHhhCCCCeE
Q psy3143 252 ---------EHFASQMKE----IIR----------------------LCSRTRQ-TMLFSATMTDAVNDLVSVSLTRPVR 295 (337)
Q Consensus 252 ---------~~~~~~~~~----i~~----------------------~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~p~~ 295 (337)
.+|.+.+.. +++ .+++..| ++++|||+++.-. ...++++|..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeE
Confidence 477776653 322 2244455 6779999996411 2234578888
Q ss_pred EEeCCCccccCCeeEEEEEecC
Q psy3143 296 VFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 296 i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
+.++.......+|.|.|+.++.
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~ 316 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK 316 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH
Confidence 9888877778899999997754
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.95 E-value=7.8e-26 Score=227.09 Aligned_cols=216 Identities=20% Similarity=0.206 Sum_probs=161.8
Q ss_pred CCHHHHHHHHh-CCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 98 LSRPLLKAIGA-LNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 98 l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+..+.+.+.+ .+| .||++|.+||+.++.+ +|++++|+||||||.+|++|++..+. .+.+++|++|
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------~g~qvlvLvP 508 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------DGKQVAVLVP 508 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------hCCeEEEEeC
Confidence 45566676655 477 5999999999999875 69999999999999999999998874 3578999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH---h-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL---R-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++||.|+++.++.+....++++..++|+.........+ . ..++|+||||.. +. +.+.++++++|||||+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~--~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ--KDVKFKDLGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh--CCCCcccCCEEEeecc
Confidence 999999999999998888889999998887654443322 2 358999999942 22 2567899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|++. ......++.++...|+++||||+.+....+....+.++..|.+.+.. ...+.+++.... +..-+..+
T Consensus 583 hrfg-----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~--~~~i~~~i 653 (926)
T TIGR00580 583 QRFG-----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD--PELVREAI 653 (926)
T ss_pred cccc-----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC--HHHHHHHH
Confidence 9852 23344556677789999999998888777777778888888876543 234666655332 11223344
Q ss_pred HHHhhhcCC
Q psy3143 327 LGLMLLREN 335 (337)
Q Consensus 327 L~~ll~~~~ 335 (337)
+..+.+.++
T Consensus 654 ~~el~~g~q 662 (926)
T TIGR00580 654 RRELLRGGQ 662 (926)
T ss_pred HHHHHcCCe
Confidence 455545444
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.95 E-value=1e-25 Score=230.79 Aligned_cols=215 Identities=22% Similarity=0.218 Sum_probs=166.5
Q ss_pred HHHHHH-HHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 100 RPLLKA-IGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 100 ~~l~~~-l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
....+. ...++| .||+.|.+||+.++.+ +|+++||+||+|||.+|+.+++..+. .+.+++||+||+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~ 659 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcH
Confidence 344444 456677 7999999999999987 79999999999999999988877653 367899999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||.|++..+.......++++..++|+.+...+...+. ..++|+||||+.+ . ..+.++++++|||||+|+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhh
Confidence 99999999999877767888888888887766655443 4689999999643 2 245678999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
+ ++. ....++.++.++|+++||||+.+....++..++++|..|.+.+... ..+.+++..+.. ...+..+++
T Consensus 734 f---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~--~~~k~~il~ 804 (1147)
T PRK10689 734 F---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDS--LVVREAILR 804 (1147)
T ss_pred c---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCc--HHHHHHHHH
Confidence 7 322 2344567788999999999999888888888899999998765432 346665554432 234566777
Q ss_pred HhhhcCCC
Q psy3143 329 LMLLRENC 336 (337)
Q Consensus 329 ~ll~~~~~ 336 (337)
++.+.|++
T Consensus 805 el~r~gqv 812 (1147)
T PRK10689 805 EILRGGQV 812 (1147)
T ss_pred HHhcCCeE
Confidence 77776665
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=223.57 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=157.4
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeEEEEcCCHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~lil~Pt~~La 175 (337)
|++.+.+.+... |..||+.|..|||.+..|+|+++.||||||||+++.+|++..++... ....+..||||+|-|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678888888777 99999999999999999999999999999999999999999998763 223468899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC--CCCCccEEEEeccccccccc
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF--SLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~l~~~~~iViDEad~l~~~~ 253 (337)
..+...+..++...|+.+..-+|.+......+...+.|||+|+||+.|.-++... .+ .|++++++|+||+|.+....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999999989999999999999999998877653 22 38999999999999987654
Q ss_pred H----HHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 254 F----ASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 254 ~----~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
- .-.+.++....+ ..|.|++|||..+.
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~ 196 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP 196 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH
Confidence 3 334455555556 88999999999854
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=99.94 E-value=1.9e-26 Score=229.08 Aligned_cols=178 Identities=21% Similarity=0.321 Sum_probs=148.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|++++|++.+++.+...++. ++++|.++++.+..+++++++||||||||+++.++++..+. .++++||++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------~~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------AGLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------hCCcEEEEech
Confidence 477899999999999999987 99999999999999999999999999999999999998874 24689999999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
++||.|+++.+..+. ..+.++...+|+...... ....++|+|+||+++..++.+. ...+.++++||+||||.+.+
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccC
Confidence 999999999998764 457888888887653221 2245699999999998888664 34588999999999999988
Q ss_pred ccHHHHHHHHH---HHcCCCCeEEEEeecCchh
Q psy3143 252 EHFASQMKEII---RLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 252 ~~~~~~~~~i~---~~~~~~~q~i~~SAT~~~~ 281 (337)
.++...+..++ +.+++..|+|++|||+++.
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~ 182 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSNA 182 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH
Confidence 77666666554 3456788999999999763
No 50
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=9.3e-26 Score=231.77 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=152.6
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH
Q psy3143 101 PLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ 180 (337)
Q Consensus 101 ~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~ 180 (337)
++.+.+.......|+++|..++|.++.|++++++||||||||+ |.+|+...+.. .++++|||+||++||.|++.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHH
Confidence 4455555555568999999999999999999999999999997 66777666532 26789999999999999999
Q ss_pred HHHHHhhccCcEE---EEEeCCccHHHHHH---HH-hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc--
Q psy3143 181 VTRQLAQFTSVEV---ALSVGGLEVKVQES---VL-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-- 251 (337)
Q Consensus 181 ~~~~l~~~~~~~v---~~~~~~~~~~~~~~---~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-- 251 (337)
.++.++...++.+ +.++|+.+...+.. .+ ..+++|+|+||++|.+++... .. .++++|+||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhcc
Confidence 9999998776554 35678877655432 22 345899999999999887652 12 899999999999997
Q ss_pred ---------ccHHHH-HHHH----------------------HHHcCCCCe--EEEEeec-CchhHHHHHHhhCCCCeEE
Q psy3143 252 ---------EHFASQ-MKEI----------------------IRLCSRTRQ--TMLFSAT-MTDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 252 ---------~~~~~~-~~~i----------------------~~~~~~~~q--~i~~SAT-~~~~~~~~~~~~~~~p~~i 296 (337)
.||... +..+ ++.+++.+| +++|||| .|..+.. .+++++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 566553 3333 223444545 6779999 5655432 345677778
Q ss_pred EeCCCccccCCeeEEEEEecC
Q psy3143 297 FVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 297 ~~~~~~~~~~~i~q~~~~~~~ 317 (337)
.++.......+|.|.|+.+..
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~ 313 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED 313 (1171)
T ss_pred EecCccccccceEEEEEeccc
Confidence 888777778899999986543
No 51
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.2e-25 Score=211.43 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=134.6
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|+...+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHHc--
Confidence 469999999999999999999999999999999999999998752 457999999999999988887754
Q ss_pred ccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccccc--HHHHHHH
Q psy3143 188 FTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLDEH--FASQMKE 260 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~~~--~~~~~~~ 260 (337)
++.+..+.++........ .....++|+++||+++.........+ ....+++|||||||++++++ |+..+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 467777777665543322 22345799999999975422100112 46789999999999998876 6666655
Q ss_pred H--HHHcCCCCeEEEEeecCchhHHHHHHhh--CCCCeEEEe
Q psy3143 261 I--IRLCSRTRQTMLFSATMTDAVNDLVSVS--LTRPVRVFV 298 (337)
Q Consensus 261 i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~i~~ 298 (337)
+ +....+..|++++|||+++.+...+... +.+|..+..
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~ 194 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT 194 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC
Confidence 4 2223357889999999999877655443 456766554
No 52
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=6.6e-25 Score=218.54 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=143.9
Q ss_pred cCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 95 QMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 95 ~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
.++++..+...++. +|+..++++|.++|+.++.|+|+++++|||+|||+||++|++.. ++.+|||+|+++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiS 511 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVS 511 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHH
Confidence 46677777777654 69999999999999999999999999999999999999999853 457999999999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh------cCCCEEEECcHHHHH--HHhcC-CCC-CCCCccEEEE
Q psy3143 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR------KCPDIVIATPGRLLD--HLHNT-PSF-SLSDIEVLVL 243 (337)
Q Consensus 174 La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~Ilv~Tp~~l~~--~l~~~-~~~-~l~~~~~iVi 243 (337)
|+.++...+.. .++....+.++.....+...+. ..++|||+||++|.. .+.+. ..+ ....+.+|||
T Consensus 512 LmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVI 587 (1195)
T PLN03137 512 LIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 587 (1195)
T ss_pred HHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceecc
Confidence 99865555443 3588888888887766654443 457999999999863 12111 011 2345899999
Q ss_pred eccccccccc--HHHHHHHH--HHHcCCCCeEEEEeecCchhHHHHHHhhC--CCCeEEE
Q psy3143 244 DEADRMLDEH--FASQMKEI--IRLCSRTRQTMLFSATMTDAVNDLVSVSL--TRPVRVF 297 (337)
Q Consensus 244 DEad~l~~~~--~~~~~~~i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~p~~i~ 297 (337)
||||+++++| |++.+..+ ++...+..|+++||||+++.+...+...+ .++.++.
T Consensus 588 DEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr 647 (1195)
T PLN03137 588 DEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR 647 (1195)
T ss_pred CcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee
Confidence 9999999987 77777654 33444578899999999999887665443 3444433
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=4.5e-24 Score=211.13 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=134.4
Q ss_pred HHHHHHHHh-CCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 100 RPLLKAIGA-LNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 100 ~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
..+.+.+.+ ++| .||++|.++++.+..+ .+++++|+||||||++|++|++..+. .+.+++|++||+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~ 320 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTE 320 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccH
Confidence 455666654 455 6999999999999876 38999999999999999999998873 367899999999
Q ss_pred HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---Hh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 173 ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---LR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 173 ~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||.|++..++.+....++++.+++|+......... +. ..++|+||||+.+.. .+.+++++++|+||+|+
T Consensus 321 ~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 321 ILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhh
Confidence 999999999999998889999999999876544332 22 358999999987643 44588999999999998
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
+.. .....+.......++++||||+.+....+..
T Consensus 395 fg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~ 428 (681)
T PRK10917 395 FGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTA 428 (681)
T ss_pred hhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH
Confidence 632 2222333445568999999998776655544
No 54
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=209.83 Aligned_cols=188 Identities=24% Similarity=0.326 Sum_probs=155.0
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
....+..++.+.|+..++.+|.+|+..+.+|+|+||+.+||||||.+|++|+++.++..+ ..++|+|.||++||+.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----~a~AL~lYPtnALa~D 130 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----SARALLLYPTNALAND 130 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----CccEEEEechhhhHhh
Confidence 344568889999999999999999999999999999999999999999999999998654 3389999999999999
Q ss_pred HHHHHHHHhhccC--cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC---CCCCCccEEEEecccccc--
Q psy3143 178 VYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS---FSLSDIEVLVLDEADRML-- 250 (337)
Q Consensus 178 ~~~~~~~l~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~l~~~~~iViDEad~l~-- 250 (337)
+.+.++++....+ +.+..+.|.+........+.+.|+||+++|.+|..++..... ..+++++|||+||+|.+-
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999988776 788888888888777788899999999999999986654322 237889999999999753
Q ss_pred -cccHHHHHHHHHHHc---CCCCeEEEEeecCchhHHHHHHhh
Q psy3143 251 -DEHFASQMKEIIRLC---SRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 251 -~~~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
..+....++++++.+ +...|+|++|||+.+.-......+
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~ 253 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF 253 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhc
Confidence 334555555555544 567899999999987755544433
No 55
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=3.1e-23 Score=202.96 Aligned_cols=183 Identities=20% Similarity=0.176 Sum_probs=135.4
Q ss_pred HHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 100 RPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 100 ~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
......|+. +||..|+++|.++++.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.|+
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHH
Confidence 333444443 69999999999999999999999999999999999999998853 45799999999999999
Q ss_pred HHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-
Q psy3143 179 YQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH- 253 (337)
Q Consensus 179 ~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~- 253 (337)
...+..+ ++.+..+.++......... .....+++++||++|....... .+....+++|||||||++.+++
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccC
Confidence 8888764 4666666666554433222 2345789999999987422111 2335578999999999998865
Q ss_pred -HHHHHHHH---HHHcCCCCeEEEEeecCchhHHHHHHh--hCCCCeEEE
Q psy3143 254 -FASQMKEI---IRLCSRTRQTMLFSATMTDAVNDLVSV--SLTRPVRVF 297 (337)
Q Consensus 254 -~~~~~~~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~--~~~~p~~i~ 297 (337)
|++.+..+ ...+ +..+++++|||+++.+...+.. .+.+|....
T Consensus 157 ~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~ 205 (607)
T PRK11057 157 DFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (607)
T ss_pred cccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE
Confidence 66655544 3333 4788999999999887654433 345665544
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=4.3e-23 Score=202.80 Aligned_cols=166 Identities=23% Similarity=0.258 Sum_probs=129.6
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.+.+...+| .||++|.++++.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++||++||.
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHH
Confidence 344566777 7999999999999876 26899999999999999999998873 3668999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
|+++.+++++...++++.+++|+......... ....++|+||||+.+.. .+.+.+++++||||+|++...
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~ 372 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVE 372 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHH
Confidence 99999999998889999999999876553322 23457999999987653 355789999999999986422
Q ss_pred cHHHHHHHHHHHcC--CCCeEEEEeecCchhHHHH
Q psy3143 253 HFASQMKEIIRLCS--RTRQTMLFSATMTDAVNDL 285 (337)
Q Consensus 253 ~~~~~~~~i~~~~~--~~~q~i~~SAT~~~~~~~~ 285 (337)
. ...+..... ...++++||||+.+....+
T Consensus 373 q----r~~l~~~~~~~~~~~~l~~SATp~prtl~l 403 (630)
T TIGR00643 373 Q----RKKLREKGQGGFTPHVLVMSATPIPRTLAL 403 (630)
T ss_pred H----HHHHHHhcccCCCCCEEEEeCCCCcHHHHH
Confidence 1 122222222 2678999999987654443
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.91 E-value=2.3e-23 Score=202.81 Aligned_cols=187 Identities=15% Similarity=0.161 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHh---------HHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAF---------MLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---------~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
..+|.++++.++.|++++++|+||||||++. ++|.+..+..-......++++|++|||+||.|+...+...
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999983 3334443321111224568999999999999999888775
Q ss_pred hhc---cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHH
Q psy3143 186 AQF---TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262 (337)
Q Consensus 186 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~ 262 (337)
..+ .+..+...+|+..... ........+|+|+|++. ....++.+++|||||||.+...+ ..+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L--------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKL--------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcc--------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 544 4677888899887322 12222356999999752 12347889999999999987766 3444444
Q ss_pred HHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEe
Q psy3143 263 RLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315 (337)
Q Consensus 263 ~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~ 315 (337)
+.. +..+|+++||||++.++..+ ..++.+|..|.++. .+...|.|+|+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~ 365 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKN 365 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeec
Confidence 433 34469999999999988776 57899999999853 3456788988754
No 58
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=3.6e-23 Score=202.81 Aligned_cols=174 Identities=20% Similarity=0.206 Sum_probs=134.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
+||..++++|.++|+.++.|+|+++++|||+|||++|++|++.. ++.++||+|+++|+.|+...++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~--- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA--- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc---
Confidence 79999999999999999999999999999999999999998742 456899999999999998888774
Q ss_pred cCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--HHHHHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH--FASQMKEII 262 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~--~~~~~~~i~ 262 (337)
++.+..+.++......... ....++|+++||++|....... .+...++++|||||||++.+++ |++.+..+.
T Consensus 77 -gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 77 -GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 4677777777765544332 3356799999999986433221 3446789999999999998765 776665553
Q ss_pred ---HHcCCCCeEEEEeecCchhHHHHHHhhCC--CCeEEE
Q psy3143 263 ---RLCSRTRQTMLFSATMTDAVNDLVSVSLT--RPVRVF 297 (337)
Q Consensus 263 ---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~p~~i~ 297 (337)
..++ ..+++++|||.++.+...+...+. +|..+.
T Consensus 155 ~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~ 193 (591)
T TIGR01389 155 SLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI 193 (591)
T ss_pred HHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe
Confidence 3333 456999999999998876665543 454443
No 59
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=3.4e-23 Score=213.92 Aligned_cols=164 Identities=27% Similarity=0.389 Sum_probs=130.7
Q ss_pred EEcCCCCchhHHhHHHHHHHhhcCCC-------CCCCeeEEEEcCCHHHHHHHHHHHHHHhh------------ccCcEE
Q psy3143 133 GCAATGTGKTAAFMLPILERLLYKPR-------DDQNTRVLVLVPTRELGVQVYQVTRQLAQ------------FTSVEV 193 (337)
Q Consensus 133 v~a~TGsGKT~~~~~~~l~~l~~~~~-------~~~~~~~lil~Pt~~La~q~~~~~~~l~~------------~~~~~v 193 (337)
|+||||||||++|.+|+++.++.... ...+.++|||+|+++|+.|+.+.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999975431 12368999999999999999998875221 246889
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc----HHHHHHHHHHHcCCCC
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH----FASQMKEIIRLCSRTR 269 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~----~~~~~~~i~~~~~~~~ 269 (337)
...+|++....+...+++.++|||+||++|..++.+.....++++++|||||+|.|.+.. +...+.+|...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999999998888778888899999999999988765433458999999999999998653 4556777777778889
Q ss_pred eEEEEeecCchhHHHHHHhhCC--CCeEEEe
Q psy3143 270 QTMLFSATMTDAVNDLVSVSLT--RPVRVFV 298 (337)
Q Consensus 270 q~i~~SAT~~~~~~~~~~~~~~--~p~~i~~ 298 (337)
|+|++|||+++ ...+. .|+. +|+.|..
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~ 189 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVVN 189 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEEC
Confidence 99999999997 34444 3443 4666643
No 60
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.90 E-value=8.6e-22 Score=165.96 Aligned_cols=188 Identities=37% Similarity=0.530 Sum_probs=151.4
Q ss_pred hCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 108 ALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..++..|+++|.+++..+... +.++++++||+|||.++..+++..+.... ..+++|++|++.++.|+...+..+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 346778999999999999998 99999999999999999999988874321 4579999999999999999888877
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCC-CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCP-DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
...........++.........+.... +|+++|++.+...+... ......++++|+||||.+....+...+..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 654434444444444333333344444 99999999999988764 3567789999999999988757778888888888
Q ss_pred CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
++..+++++|||++.........++.++..+..+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999999988888887777654
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.90 E-value=3.2e-22 Score=199.56 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEEE
Q psy3143 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEVA 194 (337)
Q Consensus 116 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v~ 194 (337)
.+-.+.+..+.++++++++|+||||||++|.+++++... ..++++|++|||++|.|+++.+. .+....+..|+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 344566677778899999999999999999999997642 23589999999999999998875 45555677888
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-cccccH-HHHHHHHHHHcCCCCeEE
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEHF-ASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~~-~~~~~~i~~~~~~~~q~i 272 (337)
+.+++... .....+|+|+|||+|++++.. ...++.+++|||||+|. .++..+ ...+..+++.++.+.|++
T Consensus 82 y~vr~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 82 YRMRAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEecCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 87776442 223458999999999999876 45799999999999996 454432 234455667778889999
Q ss_pred EEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 273 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
+||||++... +..++.++..|.+... ...|.++|+.+...
T Consensus 154 lmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~ 193 (812)
T PRK11664 154 IMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAH 193 (812)
T ss_pred EEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchh
Confidence 9999998752 3467777777766543 34588888876543
No 62
>KOG0349|consensus
Probab=99.90 E-value=1.3e-23 Score=186.64 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=137.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc---CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT---SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
.+.++|+-|+|+|++|.++.+.++-..+ .++-.+++||...+.+...+..+.+|+|+||++|.+.+.. +.+.+..+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeee
Confidence 4679999999999999999777765544 4566688899999999999999999999999999999866 57789999
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcC------CCCeEEEEeecCch-hHHHHHHhhCCCCeEEEeCCCccccCCeeEE
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCS------RTRQTMLFSATMTD-AVNDLVSVSLTRPVRVFVDNNHEVALNLRQE 311 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~------~~~q~i~~SAT~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~ 311 (337)
+++|+||||.++.+++...|.++..+++ ...|.+++|||++. ++..+..+.|.-|.-|........+..+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 9999999999999999999998877764 34689999999984 5667777888999999998888888887776
Q ss_pred EEEecCcchhhHHHHHHHhhh
Q psy3143 312 FVSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~ll~ 332 (337)
...+...- .--+.-|+..++
T Consensus 445 v~lv~p~~-d~sw~~lr~~i~ 464 (725)
T KOG0349|consen 445 VKLVCPSV-DGSWCDLRQFIE 464 (725)
T ss_pred eeecCCcc-CccHHHHhhhhc
Confidence 66555422 233444554443
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.90 E-value=4.7e-22 Score=197.97 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEEE
Q psy3143 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEVA 194 (337)
Q Consensus 116 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v~ 194 (337)
.+-.+.+..+..+++++++|+||||||++|.+++++... .+++++|++|||++|.|+++.+. .+....+..|+
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 344556667778899999999999999999999998752 24689999999999999998875 45555567777
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc-ccccccHHH-HHHHHHHHcCCCCeEE
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD-RMLDEHFAS-QMKEIIRLCSRTRQTM 272 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad-~l~~~~~~~-~~~~i~~~~~~~~q~i 272 (337)
+.+++.. .....++|+|+|||+|++++.+ ...++++++|||||+| ++++..+.- .+..+...++...|+|
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 7666533 2334569999999999999876 4579999999999999 477665433 3455666678889999
Q ss_pred EEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecC
Q psy3143 273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 273 ~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
+||||++... +..|+.++..|.+... ...+.++|+.+..
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~ 189 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG 189 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch
Confidence 9999999764 3567777767766543 2347788877654
No 64
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=8.3e-23 Score=199.89 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=130.0
Q ss_pred ccCCCCHHHHHHHH-----hCCCCCC---hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE
Q psy3143 94 HQMNLSRPLLKAIG-----ALNYIYP---TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165 (337)
Q Consensus 94 ~~~~l~~~l~~~l~-----~~~~~~p---~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 165 (337)
+.+.+...+.+.+. .+||..| +|+|.++++.++.++++++.++||+|||++|++|++..++. +..+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~------g~~v 138 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT------GKPV 138 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh------cCCe
Confidence 56778888888877 6799999 99999999999999999999999999999999999988763 2248
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCCCCCC-------C
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPSFSLS-------D 237 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~l~-------~ 237 (337)
+||+||++||.|+.+++..+.+++++.+++++||.....+...+ .+||+||||++| .+++... .+.++ .
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~ 215 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRG 215 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhccc
Confidence 99999999999999999999999999999999999988776555 479999999999 9998763 34444 5
Q ss_pred ccEEEEecccccc
Q psy3143 238 IEVLVLDEADRML 250 (337)
Q Consensus 238 ~~~iViDEad~l~ 250 (337)
+.++||||||.|+
T Consensus 216 ~~~~IIDEADsmL 228 (970)
T PRK12899 216 FYFAIIDEVDSIL 228 (970)
T ss_pred ccEEEEechhhhh
Confidence 6899999999986
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.89 E-value=2.7e-22 Score=197.93 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHH-hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVA-LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
.+...+.+-+...++....+-|+.++... ..++|++||+|||||||+.+++.+++.+... +.++|||+|+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa 89 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALA 89 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHH
Confidence 36778888888888878888787777665 4569999999999999999999999998632 57899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
.+.++.++ .....+++|....|+...... .-..++|+|+||+++-..+++.+. .+..+++|||||+|.+.+....
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 99999999 446679999999998875542 124469999999999998877644 5789999999999998877544
Q ss_pred HHHHHHHHH---cCCCCeEEEEeecCchh
Q psy3143 256 SQMKEIIRL---CSRTRQTMLFSATMTDA 281 (337)
Q Consensus 256 ~~~~~i~~~---~~~~~q~i~~SAT~~~~ 281 (337)
..+..|... .....|++++|||+|+.
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~ 193 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA 193 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH
Confidence 554444433 33448999999999975
No 66
>KOG0952|consensus
Probab=99.86 E-value=6.5e-21 Score=185.04 Aligned_cols=205 Identities=18% Similarity=0.253 Sum_probs=149.0
Q ss_pred hCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCC----CCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 108 ALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPR----DDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
-++|..++.+|..++|.+... .|+|||||||||||-.|++.+++.+..... .....+++||+|+++||..+...+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 357778899999999998754 599999999999999999999999864221 124679999999999999998888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CCC-CCCCccEEEEecccccccccHHHHHHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PSF-SLSDIEVLVLDEADRMLDEHFASQMKE 260 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~-~l~~~~~iViDEad~l~~~~~~~~~~~ 260 (337)
.+-....++.|.-+.|++...... . ..++|+|+||++.--.-+.+ +.. .++.+++|||||+|.+.+.- ++.+..
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-GpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc-cchHHH
Confidence 876667799999999998876554 2 33599999999864322222 112 26789999999999776532 233333
Q ss_pred H-------HHHcCCCCeEEEEeecCchhHHHHHHhhCCC--CeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 261 I-------IRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 261 i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
| ........+++++|||+|+-. .++ .|++- +.-++.-.....+..+.|.|+-+...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~e-DvA-~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~ 325 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNYE-DVA-RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK 325 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCHH-HHH-HHhcCCCccceeeecccccccceeeeEEeeecc
Confidence 2 233345678999999999743 222 24443 34444444566777788888887765
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.86 E-value=6.2e-20 Score=168.83 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=120.0
Q ss_pred HHHHHHHHHhCCCC--EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc----C
Q psy3143 117 IQAATIPVALLGRD--ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT----S 190 (337)
Q Consensus 117 ~Q~~~i~~~~~~~~--~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~----~ 190 (337)
+|.++++.+..+.+ ++++||||||||++|++|++.. ..++++++|+++|+.|+++.+..+.... +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 48999999998874 7889999999999999998842 3468999999999999999988876432 4
Q ss_pred cEEEEEeCCccHH--H------------------HHHHHhcCCCEEEECcHHHHHHHhcC---CC----CCCCCccEEEE
Q psy3143 191 VEVALSVGGLEVK--V------------------QESVLRKCPDIVIATPGRLLDHLHNT---PS----FSLSDIEVLVL 243 (337)
Q Consensus 191 ~~v~~~~~~~~~~--~------------------~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~----~~l~~~~~iVi 243 (337)
..+..+.|..... . ........++|+++||+.|..++... +. ..+.++++||+
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5555555542211 0 01111246789999999998765431 11 12578999999
Q ss_pred ecccccccccH-----HHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh--CCCCeEE
Q psy3143 244 DEADRMLDEHF-----ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS--LTRPVRV 296 (337)
Q Consensus 244 DEad~l~~~~~-----~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~p~~i 296 (337)
||+|.+..... ......+++......+++++|||+++.+...+... +..|..+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~ 211 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP 211 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee
Confidence 99999764331 11233344444445799999999999888777654 5555443
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=172.94 Aligned_cols=228 Identities=22% Similarity=0.269 Sum_probs=176.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
-+..++.+++++.+-|+..|+..+.|+|..++.. ++.|.|.+|.++|+||||++.-++-+..++. .+.+.|+++
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----~g~KmlfLv 268 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----GGKKMLFLV 268 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----CCCeEEEEe
Confidence 4577899999999999999999999999999987 6789999999999999999998888888762 477899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|..+||+|-+..|+.-...+++.+.+-+|-...+.... ......||+|+|.+.+-.++... ..+.++..+||||
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeee
Confidence 99999999999999877788899988888766554432 22234699999999998877663 5689999999999
Q ss_pred ccccccccHHHHHHHHH---HHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 246 ADRMLDEHFASQMKEII---RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
+|.+-+....+.+..++ +.+-+..|+|.+|||+.+. ..+++.+- ...|.- +..+..+..+.+.+.+. .+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~--a~lV~y---~~RPVplErHlvf~~~e--~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLG--AKLVLY---DERPVPLERHLVFARNE--SE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhC--CeeEee---cCCCCChhHeeeeecCc--hH
Confidence 99887754444444332 3344588999999999865 44454332 222222 23455577778877754 68
Q ss_pred HHHHHHHhhhc
Q psy3143 323 LYNVLGLMLLR 333 (337)
Q Consensus 323 ~~~~L~~ll~~ 333 (337)
|+.++..|..+
T Consensus 419 K~~ii~~L~k~ 429 (830)
T COG1202 419 KWDIIARLVKR 429 (830)
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 69
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=8.9e-20 Score=165.88 Aligned_cols=212 Identities=23% Similarity=0.310 Sum_probs=155.2
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.-.|+.+|......++.+ +++++.|||-|||+++++-+...+.. ..+ ++|+++||+.|+.|....+++......
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~----~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW----FGG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh----cCC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 346788998888777654 99999999999999998888877732 223 899999999999999999999887777
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~ 269 (337)
-.++.+.|..........|... .|+|+||+.+.+-+.. +.+++.++.++|+||||+-.+.. |.......++ ..+++
T Consensus 87 ~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~-~~k~~ 163 (542)
T COG1111 87 DEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR-SAKNP 163 (542)
T ss_pred hheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHH-hccCc
Confidence 7888999988888777777765 9999999999988866 58899999999999999977665 4444444443 34577
Q ss_pred eEEEEeecCchhHHHH---HHhhCCCCeEEEeCCCccc---cCCeeEEEEEecCcch-hhHHHHHHHhh
Q psy3143 270 QTMLFSATMTDAVNDL---VSVSLTRPVRVFVDNNHEV---ALNLRQEFVSFSNIDE-VRLYNVLGLML 331 (337)
Q Consensus 270 q~i~~SAT~~~~~~~~---~~~~~~~p~~i~~~~~~~~---~~~i~q~~~~~~~~~~-~~~~~~L~~ll 331 (337)
.++++|||+..+...+ +...--.-+.|++....-. .-.++-.++.++--.+ .+-.+.|+.+|
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l 232 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDAL 232 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHH
Confidence 8999999998775544 3322223444554433222 2346666777665433 33344444444
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=9.3e-21 Score=181.83 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=115.4
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+... ..+++|||+||++|+.|+.+.+..++....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 357999999999999999999999999999999765432 222211 234899999999999999999998775544
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
..+..+.+|.... ...+|+|+||+.+.+... ..+.++++||+||||++....+ ..++..+++..+
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~~----~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKSL----TSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchhH----HHHHHhhhccce
Confidence 4555566664321 345899999999876432 2367899999999999876544 455566666788
Q ss_pred EEEEeecCchh
Q psy3143 271 TMLFSATMTDA 281 (337)
Q Consensus 271 ~i~~SAT~~~~ 281 (337)
+++||||+.+.
T Consensus 252 ~lGLTATp~~~ 262 (501)
T PHA02558 252 KFGLTGSLRDG 262 (501)
T ss_pred EEEEeccCCCc
Confidence 99999999754
No 71
>KOG0354|consensus
Probab=99.85 E-value=1.2e-20 Score=180.59 Aligned_cols=181 Identities=20% Similarity=0.244 Sum_probs=138.4
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
+.+.....+.-.....++.+|...+..++ |+++||++|||+|||++++..+++++-..+ .+++|+++||+.|+.|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----~~KiVF~aP~~pLv~Q 121 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----KGKVVFLAPTRPLVNQ 121 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----cceEEEeeCCchHHHH
Confidence 44444444444555678999999999999 999999999999999999999999884433 5899999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FAS 256 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~ 256 (337)
+...+..++.. ..+....|+.........+-...+|+|+||..|.+.|.......|+.+.++||||||+-.... |..
T Consensus 122 Q~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 122 QIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 88666666544 556666666433333333444569999999999998877544447999999999999977665 666
Q ss_pred HHHHHHHHcCCCCeEEEEeecCchhHHHH
Q psy3143 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDL 285 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SAT~~~~~~~~ 285 (337)
.++..+.......|+|++|||+.....+.
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG~~~~~v 228 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPGSKLEQV 228 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCCccHHHH
Confidence 66666666555669999999999775543
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=2.8e-20 Score=172.04 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=107.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH-----
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV----- 204 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~----- 204 (337)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. ..++..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccC
Confidence 58999999999999999999988642 2356899999999999999999998642 13444444332110
Q ss_pred -------HH-HHHh-----cCCCEEEECcHHHHHHHhcC-CC--CCC--CCccEEEEecccccccccHHHHHHHHHHHc-
Q psy3143 205 -------QE-SVLR-----KCPDIVIATPGRLLDHLHNT-PS--FSL--SDIEVLVLDEADRMLDEHFASQMKEIIRLC- 265 (337)
Q Consensus 205 -------~~-~~~~-----~~~~Ilv~Tp~~l~~~l~~~-~~--~~l--~~~~~iViDEad~l~~~~~~~~~~~i~~~~- 265 (337)
.. .... ...+|+|+||++++..+... +. +.+ -..++|||||||.+.+.++.. +..+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 00 0001 12579999999999877652 11 111 123799999999998876544 55554444
Q ss_pred CCCCeEEEEeecCchhHHHHHHhhCC
Q psy3143 266 SRTRQTMLFSATMTDAVNDLVSVSLT 291 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~~~~~~~~~~~~ 291 (337)
..+.|+++||||+|..+..++..+..
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~ 178 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGY 178 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCC
Confidence 35789999999999888777765543
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.83 E-value=6.2e-19 Score=178.41 Aligned_cols=164 Identities=24% Similarity=0.286 Sum_probs=127.9
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
+...|+++|..++..++.+ ++++++|||+|||+++++++...+. ..++++|||+||++|+.|+...++.+....
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 3446899999999888776 9999999999999999998887762 235789999999999999999999876544
Q ss_pred CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
+..+..+.|+.........+ ...+|+|+||+.+...+.. +.+.+.++++|||||||++........+...+....+..
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 55788888877765544444 3469999999999887755 366788999999999999876543334444444445567
Q ss_pred eEEEEeecCchh
Q psy3143 270 QTMLFSATMTDA 281 (337)
Q Consensus 270 q~i~~SAT~~~~ 281 (337)
++++||||+...
T Consensus 164 ~il~lTaTP~~~ 175 (773)
T PRK13766 164 LVLGLTASPGSD 175 (773)
T ss_pred EEEEEEcCCCCC
Confidence 899999997544
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.6e-18 Score=166.94 Aligned_cols=131 Identities=24% Similarity=0.201 Sum_probs=108.4
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
-...|+++|..+++.++.|+ |+.+.||+|||++|++|++...+ .++.++||+||++||.|.+.++..+..+.
T Consensus 100 lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 33568999999999999999 99999999999999999998764 36789999999999999999999999999
Q ss_pred CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC------------------------CCCCCCCccEEEEe
Q psy3143 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT------------------------PSFSLSDIEVLVLD 244 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------------------------~~~~l~~~~~iViD 244 (337)
++.+++++|+.... .+....++||+|||..-| .++|..+ .......+.+.|||
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 99999999997643 344456789999999877 4444322 01124668899999
Q ss_pred cccccc
Q psy3143 245 EADRML 250 (337)
Q Consensus 245 Ead~l~ 250 (337)
|+|.++
T Consensus 250 EvDSiL 255 (656)
T PRK12898 250 EADSVL 255 (656)
T ss_pred ccccee
Confidence 999865
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.81 E-value=3.1e-18 Score=169.17 Aligned_cols=157 Identities=23% Similarity=0.219 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHhCC---CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 113 YPTPIQAATIPVALLG---RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
.+++.|.+++..+..+ ++++++|+||||||.+|+.++...+. .+.++||++||++|+.|+.+.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------~g~~vLvLvPt~~L~~Q~~~~l~~~f--- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------QGKQALVLVPEIALTPQMLARFRARF--- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHh---
Confidence 5899999999999874 78999999999999999988877763 25689999999999999999888643
Q ss_pred CcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc---HHHHHH--H
Q psy3143 190 SVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH---FASQMK--E 260 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~---~~~~~~--~ 260 (337)
+..+..++|+.+....... ....++|+|||++.+. ..++++.+||+||+|.....+ .....+ .
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 5678888988776544333 3356799999998764 247889999999999754321 111111 2
Q ss_pred HHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 261 IIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 261 i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
+.+....+.|++++|||++.+....+
T Consensus 287 ~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 287 VVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred HHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 33445668899999999886655544
No 76
>KOG0947|consensus
Probab=99.80 E-value=3.1e-19 Score=171.82 Aligned_cols=186 Identities=19% Similarity=0.218 Sum_probs=147.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|..+|++||.++..|-+|+|.|+|.+|||+++-.++.-.- .++.|++|..|-++|.+|-++.|+....
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~tF~---- 365 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKETFG---- 365 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHhcc----
Confidence 357899999999999999999999999999998644332221 1478999999999999999998887542
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.++++.|+.+.. ....++|+|.+.|.+++.+...+ ++++.+||+||+|.+.+...+-.+..++=++|++.++
T Consensus 366 DvgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 366 DVGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ccceeecceeeC-------CCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 344777765543 33589999999999999885443 7899999999999988877666677777889999999
Q ss_pred EEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 272 i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
|++|||+|+..+-.-+..-.+-..|+|......+..+.++ +++.
T Consensus 438 IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~-l~t~ 481 (1248)
T KOG0947|consen 438 ILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHY-LYTK 481 (1248)
T ss_pred EEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEE-EEec
Confidence 9999999998776655555566667766666666677774 4455
No 77
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-18 Score=172.15 Aligned_cols=188 Identities=23% Similarity=0.251 Sum_probs=143.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+| .+.++|++++-.+..|.+|++|||||+|||++.-.++...+. .+.|++|+.|.++|..|.++.+......
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 344 578999999999999999999999999999998777766663 3556999999999999999888764422
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
..-.++++.|+.. ++....++|+|.+.|.+++... ...+..+.+||+||+|.|.+..-+-....++-.++..
T Consensus 189 v~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 189 VADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhccceeccee-------eCCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 2233566777544 3445689999999999998774 5668999999999999998887666777788899999
Q ss_pred CeEEEEeecCchhHHHH--HHhhCCCCeEEEeCCCccccCCeeEEEE
Q psy3143 269 RQTMLFSATMTDAVNDL--VSVSLTRPVRVFVDNNHEVALNLRQEFV 313 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~--~~~~~~~p~~i~~~~~~~~~~~i~q~~~ 313 (337)
.|++++|||+|+..+-- +...-..|..+.+.+ ..+..+.|++.
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~ 305 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVY 305 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec--CCCCCeEEEEe
Confidence 99999999999875533 332234566655533 33444555443
No 78
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.79 E-value=1.1e-17 Score=132.75 Aligned_cols=144 Identities=43% Similarity=0.593 Sum_probs=111.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+++++.++||+|||..++.++...... ....+++|++|++.++.|....+...... +..+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 468999999999999998888877643 23568999999999999999888877655 6777777777665555555
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
.....+|+++|++.+...+... ......++++|+||+|.+....+...............+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5667899999999998877654 33466789999999999877665444333344456778999999995
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=3.1e-18 Score=166.01 Aligned_cols=131 Identities=22% Similarity=0.232 Sum_probs=109.2
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+|+++|..+.+.+..|+ ++.++||+|||++|.+|++-..+ .+..|.|++||+.||.|.++++..+..+++
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL------~G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL------TGKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH------hCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3468999999988887776 99999999999999999954333 244699999999999999999999999999
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCCCccEEEEeccccccc
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~~~~iViDEad~l~~ 251 (337)
+.++++.|+.........+ .++|+||||++| .+++...- .+.++.+.++||||+|.|+-
T Consensus 126 Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999998865444433 479999999999 88886541 23578999999999999764
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=6.8e-18 Score=165.92 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=108.7
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
|. .|+++|..+.+.+..|+ |+.+.||+|||+++++|++...+ .+..++|++||+.||.|.+.++..+..++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 54 89999999999888776 99999999999999999986654 36789999999999999999999999999
Q ss_pred CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
++.++++.|+.....+.+. ...++|+||||++| .+++..+ ....+..+.++||||||.|+
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999999884333332 34579999999999 5555432 11346889999999999876
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.76 E-value=5e-17 Score=166.00 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH----HHHHHHHHHHHHHhhccC
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR----ELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~----~La~q~~~~~~~l~~~~~ 190 (337)
...-...+..+..++.++|+|+||||||+. +|.+.... . .+..+++++..|.| +||.++...+.. ..+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~--g-~g~~g~I~~TQPRRlAArsLA~RVA~El~~---~lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL--G-RGVKGLIGHTQPRRLAARTVANRIAEELET---ELG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc--C-CCCCCceeeCCCcHHHHHHHHHHHHHHHhh---hhc
Confidence 344556666676777888999999999995 55322211 1 11234677778865 666666665553 122
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc-ccccccHHHH-HHHHHHHcCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD-RMLDEHFASQ-MKEIIRLCSRT 268 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad-~l~~~~~~~~-~~~i~~~~~~~ 268 (337)
..+++.+... ......++|+|+|||+|++.+... ..++++++||||||| ++++.+|... +..++.. .++
T Consensus 148 ~~VGY~vrf~------~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 148 GCVGYKVRFN------DQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred ceeceeecCc------cccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 3333322211 112356799999999999999763 459999999999999 5788776542 3333322 246
Q ss_pred CeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecC
Q psy3143 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~ 317 (337)
.|+|+||||++. ..+...|...| +|.+.... ..+.++|..+..
T Consensus 219 lKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~ 261 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVE 261 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeeccc
Confidence 899999999975 35555555555 46665432 347778877654
No 82
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=7.3e-17 Score=160.71 Aligned_cols=219 Identities=21% Similarity=0.197 Sum_probs=175.8
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHHHHhC----CC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALL----GR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 97 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~----~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
+.+......+.....-.-|+-|..||..+.. ++ |-++||..|-|||.+++=+++-.+. .|.+|.|+||
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVP 651 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVP 651 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcc
Confidence 3455566666655444569999999998764 33 8899999999999999988888874 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|.-||+|.++.|+....+.+++|..+..-.+.+.+...+. +..|||||| +++++. .+.++++.++||||-
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~k--dv~FkdLGLlIIDEE 725 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSK--DVKFKDLGLLIIDEE 725 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCC--CcEEecCCeEEEech
Confidence 9999999999999998999999999988887777665544 568999999 334433 778999999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|+. +-.-+.-++.+..+.-++-||||+-|.-..+.-..+++.-+|.+++....+ |+.++. ..++..-+-.+
T Consensus 726 qRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~--~~d~~~ireAI 796 (1139)
T COG1197 726 QRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVS--EYDDLLIREAI 796 (1139)
T ss_pred hhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEe--cCChHHHHHHH
Confidence 984 444455566667788899999999999999999999999999998766555 555444 44455788899
Q ss_pred HHHhhhcCCC
Q psy3143 327 LGLMLLRENC 336 (337)
Q Consensus 327 L~~ll~~~~~ 336 (337)
+++++|.|++
T Consensus 797 ~REl~RgGQv 806 (1139)
T COG1197 797 LRELLRGGQV 806 (1139)
T ss_pred HHHHhcCCEE
Confidence 9999998874
No 83
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.1e-17 Score=158.38 Aligned_cols=179 Identities=21% Similarity=0.231 Sum_probs=138.4
Q ss_pred HHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 104 KAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 104 ~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
..|+. +|+..+.+-|..+|..+++|+|+++..|||.||++||.+|++-. .+-+|||+|-.+|...+...+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHH
Confidence 33443 58999999999999999999999999999999999999998753 447999999999999888888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--HHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH--FAS 256 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~--~~~ 256 (337)
+..+ +.+..+.+..+.......+ ....++++-+|++|..--... .+.-..+.++||||||++.++| |++
T Consensus 78 ~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 78 EAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCH
Confidence 7754 7777777665544443333 344799999999986532221 2235568899999999999997 998
Q ss_pred HHHHHHHH---cCCCCeEEEEeecCchhHHHHHHh--hCCCCeEEE
Q psy3143 257 QMKEIIRL---CSRTRQTMLFSATMTDAVNDLVSV--SLTRPVRVF 297 (337)
Q Consensus 257 ~~~~i~~~---~~~~~q~i~~SAT~~~~~~~~~~~--~~~~p~~i~ 297 (337)
.+..+-.. ++ +.+++.+|||.++.+...+.. .+..|..+.
T Consensus 153 ~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~ 197 (590)
T COG0514 153 DYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR 197 (590)
T ss_pred hHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE
Confidence 88876543 34 778999999999998877664 445654444
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.75 E-value=9.3e-18 Score=163.61 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|...... .++..++.++||+|||++|++|++...+ .+..++|++|+++||.|...++..+..++++.
T Consensus 70 rpydVQlig~l~--l~~G~Iaem~TGeGKTLta~Lpa~l~aL------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIV--LHQGNIAEMKTGEGKTLTATMPLYLNAL------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHH--hcCCceeEecCCcchHHHHHHHHHHHhh------cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 455555555444 4445799999999999999999877664 24569999999999999999999999999999
Q ss_pred EEEEeCCcc---HHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 193 VALSVGGLE---VKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 193 v~~~~~~~~---~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
+++++++.. ..........+++|++|||++| .+++... ....++.+.++|+||||.|+
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 988877622 2222333445789999999999 4555321 23447889999999999985
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.3e-17 Score=161.13 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-+|+++|.- -.+.....-|+.++||+|||++|.+|++..++. +..++||+||++||.|.+.++..+..++++
T Consensus 81 ~~~ydvQli--Gg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 81 LRHFDVQLI--GGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CCcchHHHh--hhhhhccCccccccCCCCchHHHHHHHHHHHhc------CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 346666644 444444556899999999999999999977652 346999999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCCCCC-----CCccEEEEecccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPSFSL-----SDIEVLVLDEADRML 250 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~l-----~~~~~iViDEad~l~ 250 (337)
.+++++|+.........+ .+||+||||++| .+++...-.+++ ..+.++||||||.|+
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 999999998776654444 579999999999 999876533444 589999999999876
No 86
>KOG0951|consensus
Probab=99.73 E-value=5.2e-17 Score=160.29 Aligned_cols=225 Identities=18% Similarity=0.241 Sum_probs=159.9
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-----CCeeEEEEcCC
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDD-----QNTRVLVLVPT 171 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-----~~~~~lil~Pt 171 (337)
++..-..++. |...+..+|......++.+. ++++|||||+|||..+++.+++.+-.+.+.. ...+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 3333444443 44458999999999998876 8999999999999999999999986544321 24589999999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCC-CCCccEEEEecccccc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFS-LSDIEVLVLDEADRML 250 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~-l~~~~~iViDEad~l~ 250 (337)
.+|+..+...+.+.....++.|.-..|........ -...+|+||||+..--.-++.+... .+-++++|+||.|.+.
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999988888888999999999886644322 1235899999998744334433332 3468999999999765
Q ss_pred cc-c--HHHHHHHHHHHc---CCCCeEEEEeecCchh--HHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhh
Q psy3143 251 DE-H--FASQMKEIIRLC---SRTRQTMLFSATMTDA--VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322 (337)
Q Consensus 251 ~~-~--~~~~~~~i~~~~---~~~~q~i~~SAT~~~~--~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~ 322 (337)
+. | ....+.+.++.. ...++++++|||+|+- +..++. .+|.-++.-..+..+..+.|.||-+...+...
T Consensus 451 DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~---v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLR---VDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhc---cCcccccccCcccCcCCccceEeccccCCchH
Confidence 43 2 223333333332 4578999999999975 333322 23444554556777888999999998876666
Q ss_pred HHHHHHHh
Q psy3143 323 LYNVLGLM 330 (337)
Q Consensus 323 ~~~~L~~l 330 (337)
++..+++.
T Consensus 528 ~~qamNe~ 535 (1674)
T KOG0951|consen 528 RFQAMNEA 535 (1674)
T ss_pred HHHHHHHH
Confidence 66555543
No 87
>KOG0352|consensus
Probab=99.72 E-value=4.6e-17 Score=144.97 Aligned_cols=185 Identities=18% Similarity=0.214 Sum_probs=132.8
Q ss_pred HHHHHHHhC-CCCC-ChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 101 PLLKAIGAL-NYIY-PTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 101 ~l~~~l~~~-~~~~-p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
.+.++|++. |+.. -++.|.+|+..+..++ ||+|++|||+||++||.+|.+-. ++.+||+.|..+|...
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHHH
Confidence 345566553 5544 3799999999988765 99999999999999999998864 4579999999999988
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHH------hcCCCEEEECcHHHHH-----HHhcCCCCCCCCccEEEEecc
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVL------RKCPDIVIATPGRLLD-----HLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~Ilv~Tp~~l~~-----~l~~~~~~~l~~~~~iViDEa 246 (337)
+...+..+- +.+..+....+.....+.+ +....+++-||++-.. +++. ...-..+.|+|+|||
T Consensus 77 QiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 77 QIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechh
Confidence 888777654 4444444444433333222 2446799999987532 2221 222445899999999
Q ss_pred ccccccc--HHHHHHHHHH--HcCCCCeEEEEeecCchhHHHHHH--hhCCCCeEEEeCC
Q psy3143 247 DRMLDEH--FASQMKEIIR--LCSRTRQTMLFSATMTDAVNDLVS--VSLTRPVRVFVDN 300 (337)
Q Consensus 247 d~l~~~~--~~~~~~~i~~--~~~~~~q~i~~SAT~~~~~~~~~~--~~~~~p~~i~~~~ 300 (337)
|++.++| |++.+..+-. ..-.....+.++||.++.+.+.+- ..+++|+-|+-.+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP 210 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP 210 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc
Confidence 9999887 7777666532 223467889999999999987654 5778998887544
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.71 E-value=2.5e-16 Score=157.53 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=117.5
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT- 189 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~- 189 (337)
...|+|+|..+......+..+++.||||+|||.+++.++...+ .. +...+++|.+||++++.+++.++..+.+..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ---GLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 4579999998865544566789999999999999877665433 21 124579999999999999999988754322
Q ss_pred -CcEEEEEeCCccHHHHH---------------------HHHh---c---CCCEEEECcHHHHHHHhcCCCCCCCCc---
Q psy3143 190 -SVEVALSVGGLEVKVQE---------------------SVLR---K---CPDIVIATPGRLLDHLHNTPSFSLSDI--- 238 (337)
Q Consensus 190 -~~~v~~~~~~~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~~l~~~l~~~~~~~l~~~--- 238 (337)
...+.+.+|........ ..+. + ..+|+|||+.+++..+...+...+..+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 45677777765422110 1111 0 158999999999876654433333322
Q ss_pred -cEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHH
Q psy3143 239 -EVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 239 -~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~ 286 (337)
++|||||+|.+ +..+...+..+++.+ .....+|+||||+|..+.+..
T Consensus 440 ~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 440 RSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKL 488 (878)
T ss_pred cCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHH
Confidence 58999999986 334445555555544 346789999999998876543
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=1.2e-16 Score=133.22 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=102.0
Q ss_pred CChHHHHHHHHHHhC-------CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALL-------GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.++++|.+++..+.. ++.+++.+|||||||.+++..+.... . +++|++|+..|+.|....+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~--------~-~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA--------R-KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------C-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------c-ceeEecCHHHHHHHHHHHHHHh
Confidence 368999999998873 68999999999999999886555554 1 8999999999999999888655
Q ss_pred hhccCcEEE-----------EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC----------CCCCCccEEEEe
Q psy3143 186 AQFTSVEVA-----------LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS----------FSLSDIEVLVLD 244 (337)
Q Consensus 186 ~~~~~~~v~-----------~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----------~~l~~~~~iViD 244 (337)
......... ...................+++++|...|......... ......++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 532111100 01111111122233345568999999999887654211 124567899999
Q ss_pred ccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 245 EADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 245 Ead~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
|||++.... |.. ++. .+...+|+||||+.
T Consensus 154 EaH~~~~~~~~~~----i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYRE----IIE--FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHH----HHH--SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHH----HHc--CCCCeEEEEEeCcc
Confidence 999976555 333 333 55677899999976
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.6e-15 Score=144.92 Aligned_cols=138 Identities=22% Similarity=0.207 Sum_probs=97.7
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV--- 208 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~--- 208 (337)
+++|+||||||.+|+..+...+. .+.++||++|+++|+.|+.+.++... +..+..++++.+.......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHH
Confidence 47899999999999776655552 35689999999999999999888643 4567788887765443332
Q ss_pred -HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-----HHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 209 -LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-----FASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 209 -~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....++|+|||+..+. ..+.++++|||||+|.....+ |...-..+++....+.++|++|||++.+.
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles 143 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLES 143 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHH
Confidence 3345799999998663 237789999999999865322 11111123333445789999999977554
Q ss_pred HHHH
Q psy3143 283 NDLV 286 (337)
Q Consensus 283 ~~~~ 286 (337)
...+
T Consensus 144 ~~~~ 147 (505)
T TIGR00595 144 YHNA 147 (505)
T ss_pred HHHH
Confidence 4433
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.68 E-value=1.6e-15 Score=155.58 Aligned_cols=179 Identities=18% Similarity=0.153 Sum_probs=118.9
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH-HhhccCcEEEEE
Q psy3143 118 QAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LAQFTSVEVALS 196 (337)
Q Consensus 118 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-l~~~~~~~v~~~ 196 (337)
....+..+..++.++++|+||||||+.....++..- .+..++++++.|.|-.|..+...+.. ++...+..|++.
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 345566666777889999999999996544333321 12245788899999988887655544 443344455543
Q ss_pred eCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc-ccccccHHHH-HHHHHHHcCCCCeEEEE
Q psy3143 197 VGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD-RMLDEHFASQ-MKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad-~l~~~~~~~~-~~~i~~~~~~~~q~i~~ 274 (337)
+.... .....+.|.|+|||+|++.+... ..++.+++||||||| ++++.+|.-. +..++... +..|+|+|
T Consensus 147 vR~~~------~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlm 217 (1283)
T TIGR01967 147 VRFHD------QVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIIT 217 (1283)
T ss_pred EcCCc------ccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEE
Confidence 33222 12345689999999999998763 458999999999999 5888776543 55565443 57899999
Q ss_pred eecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 275 SATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 275 SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
|||+.. ..+...|...| +|.+.... ..+..+|..+.
T Consensus 218 SATld~--~~fa~~F~~ap-vI~V~Gr~---~PVev~Y~~~~ 253 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPLV 253 (1283)
T ss_pred eCCcCH--HHHHHHhcCCC-EEEECCCc---ccceeEEeccc
Confidence 999974 45555444445 46665432 34556666543
No 92
>KOG0926|consensus
Probab=99.68 E-value=5.4e-16 Score=147.41 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH-HHHhhccCcEEE
Q psy3143 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT-RQLAQFTSVEVA 194 (337)
Q Consensus 116 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~-~~l~~~~~~~v~ 194 (337)
.-.++++.+|..+--+||||.||||||+.....++++-+.......++.+-|..|.|..|..+.++. ..++. .+-.|+
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVs 337 (1172)
T KOG0926|consen 259 AEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVS 337 (1172)
T ss_pred HHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Ccccee
Confidence 3445666777777788999999999999999999998877766666779999999999988886544 45554 555555
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc--ccc---ccHHHHHHHHHHHcCC--
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR--MLD---EHFASQMKEIIRLCSR-- 267 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~--l~~---~~~~~~~~~i~~~~~~-- 267 (337)
+.+. ..........|.++|.|.|++-+.+ +|.|..++.|||||||. +.. -|+..++..+......
T Consensus 338 YqIR------fd~ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 338 YQIR------FDGTIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEE------eccccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 5443 2223344568999999999999987 78899999999999996 222 2344555555554443
Q ss_pred ----CCeEEEEeecCc
Q psy3143 268 ----TRQTMLFSATMT 279 (337)
Q Consensus 268 ----~~q~i~~SAT~~ 279 (337)
..++|+||||+.
T Consensus 410 ~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR 425 (1172)
T ss_pred cccCceeEEEEeeeEE
Confidence 678999999987
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.67 E-value=9.1e-15 Score=138.70 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
++....+++.+.+.=...+|..|++++..|... .+-++.|..|||||.+++++++..+- .|.++..++
T Consensus 245 ~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMA 318 (677)
T COG1200 245 LPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMA 318 (677)
T ss_pred CCccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEec
Confidence 445666777775554557999999999998754 26789999999999999999999883 578899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
||--||.|.+..+.++....+++|..+.|....+.... ......+|+|||-. +++. .+.++++.++|+||
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQd--~V~F~~LgLVIiDE 392 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQD--KVEFHNLGLVIIDE 392 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhhc--ceeecceeEEEEec
Confidence 99999999999999999999999999998775544433 33355899999943 2222 67799999999999
Q ss_pred ccccccccHHHHHHHHHHHcCC-CCeEEEEeecCchhHHHHH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSR-TRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~~~~~~ 286 (337)
=|+. +-.-+..++.... ...+++||||+-|.-..+.
T Consensus 393 QHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt 429 (677)
T COG1200 393 QHRF-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALT 429 (677)
T ss_pred cccc-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHH
Confidence 9994 4444444555554 5678999999877755543
No 94
>KOG0351|consensus
Probab=99.65 E-value=1.5e-15 Score=151.69 Aligned_cols=184 Identities=20% Similarity=0.169 Sum_probs=137.6
Q ss_pred HHHHH-HhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH
Q psy3143 102 LLKAI-GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ 180 (337)
Q Consensus 102 l~~~l-~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~ 180 (337)
+...+ ..+|...+.+-|.++|..++.|+|++|..|||.||++||.+|++-. ++-+|||.|-..|+..+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHHHH
Confidence 44444 4569999999999999999999999999999999999999998742 5579999999999988766
Q ss_pred HHHHHhhccCcEEEEEeCCccHHHHHHHH----hc--CCCEEEECcHHHHHHHhcC-CCCCCCC---ccEEEEecccccc
Q psy3143 181 VTRQLAQFTSVEVALSVGGLEVKVQESVL----RK--CPDIVIATPGRLLDHLHNT-PSFSLSD---IEVLVLDEADRML 250 (337)
Q Consensus 181 ~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~--~~~Ilv~Tp~~l~~~l~~~-~~~~l~~---~~~iViDEad~l~ 250 (337)
.+.. .++....+.++.....+...+ .. .++|++.||+++...-.-. ....+.. +.++||||||+..
T Consensus 323 ~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 323 HLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred hhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 6633 347777787777765443322 23 4789999999886532211 1122444 8999999999999
Q ss_pred ccc--HHHHHHHHHHH--cCCCCeEEEEeecCchhHHHHHH--hhCCCCeEEEe
Q psy3143 251 DEH--FASQMKEIIRL--CSRTRQTMLFSATMTDAVNDLVS--VSLTRPVRVFV 298 (337)
Q Consensus 251 ~~~--~~~~~~~i~~~--~~~~~q~i~~SAT~~~~~~~~~~--~~~~~p~~i~~ 298 (337)
.++ |++.+..+... ......+|.+|||.+..++..+- ..+++|.++..
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~ 452 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS 452 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc
Confidence 886 88877765432 23347899999999999887554 56677876554
No 95
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=1.8e-15 Score=142.82 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHhC----CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 112 IYPTPIQAATIPVALL----GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
..++++|.+|+..+.. ++..++++|||+|||..++..+... +.++|||+||++|+.|+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------~~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------KRSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------cCCEEEEECcHHHHHHHHHHHHHhcC
Confidence 3579999999999998 8899999999999999886655443 23499999999999999766555432
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~ 267 (337)
.. ..++.+.|+.. ... . ..|.|+|-..+...- ....+....+.+||+||||++....|......+...
T Consensus 106 ~~-~~~g~~~~~~~-~~~-----~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~--- 173 (442)
T COG1061 106 LN-DEIGIYGGGEK-ELE-----P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA--- 173 (442)
T ss_pred Cc-cccceecCcee-ccC-----C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcc---
Confidence 21 13344433322 111 1 269999998887742 001233447999999999999877765444443322
Q ss_pred CCeEEEEeecCch
Q psy3143 268 TRQTMLFSATMTD 280 (337)
Q Consensus 268 ~~q~i~~SAT~~~ 280 (337)
..++++|||++.
T Consensus 174 -~~~LGLTATp~R 185 (442)
T COG1061 174 -YPRLGLTATPER 185 (442)
T ss_pred -cceeeeccCcee
Confidence 228999999773
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.9e-15 Score=146.37 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHH-HHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL-ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l-~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
-+|+++|.-..-.+..| -|..+.||+|||+++.+|++ +.+ .+..+-|++||+.||.|.+.++..+..+++
T Consensus 80 ~~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-------~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-------TGKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-------cCCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 46788887666555554 48999999999999999996 555 234577999999999999999999999999
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCC-----CCCCCccEEEEecccccc
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPS-----FSLSDIEVLVLDEADRML 250 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~-----~~l~~~~~iViDEad~l~ 250 (337)
+.++++.|+.....+...+ .++|++|||+.| .+++...-. ..++.+.++||||||.|+
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999998887766654 379999999999 888875422 236789999999999876
No 97
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=5e-15 Score=144.60 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=105.2
Q ss_pred CCChHHHHHHHHHHhC-C--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 112 IYPTPIQAATIPVALL-G--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
..++++|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+..|+.|+...+..+...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV--------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh--------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 3579999999998873 3 4789999999999999875544 33 346999999999999999999987654
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-------CCCCCCCccEEEEecccccccccHHHHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-------PSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~~~~iViDEad~l~~~~~~~~~~~i 261 (337)
....+..+.|+.... ......|+|+|+..+.....+. ..+.-..+.+||+||||++....|. .+
T Consensus 325 ~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr----~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFR----RV 395 (732)
T ss_pred CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHH----HH
Confidence 455666666653321 1223589999998775432111 0122346889999999998654443 34
Q ss_pred HHHcCCCCeEEEEeecCch
Q psy3143 262 IRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 262 ~~~~~~~~q~i~~SAT~~~ 280 (337)
+..+.. ...+++|||+..
T Consensus 396 l~~l~a-~~RLGLTATP~R 413 (732)
T TIGR00603 396 LTIVQA-HCKLGLTATLVR 413 (732)
T ss_pred HHhcCc-CcEEEEeecCcc
Confidence 444433 346999999864
No 98
>KOG0353|consensus
Probab=99.61 E-value=1.1e-13 Score=122.07 Aligned_cols=184 Identities=17% Similarity=0.213 Sum_probs=136.8
Q ss_pred ccccCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.-.+++++.+...-|+. +....++|.|..+|...+.|.++++..|||.||++||.+|++-. .+.+|+++|
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~p 142 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICP 142 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeech
Confidence 34568888888888765 46778899999999999999999999999999999999998853 567999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHh--cCCCEEEECcHHHHHH---Hhc-CCCCCCCCccE
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLR--KCPDIVIATPGRLLDH---LHN-TPSFSLSDIEV 240 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~--~~~~Ilv~Tp~~l~~~---l~~-~~~~~l~~~~~ 240 (337)
...|++.+.-.++.++ +....+....+..... ...+ ....+++.||+.+... +.+ ...+....+.+
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999988877777765 5544444444332221 1122 2357899999988642 111 12445677899
Q ss_pred EEEeccccccccc--HHHHHHH--HHHHcCCCCeEEEEeecCchhHHHHHHh
Q psy3143 241 LVLDEADRMLDEH--FASQMKE--IIRLCSRTRQTMLFSATMTDAVNDLVSV 288 (337)
Q Consensus 241 iViDEad~l~~~~--~~~~~~~--i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 288 (337)
|.+||+|+-.++| |++.+.. +++.--++..+|+++||.++.+...+..
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHH
Confidence 9999999988776 6666554 3444445778999999999887766554
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.60 E-value=2.2e-14 Score=141.81 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEV 193 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v 193 (337)
+....+.+..+.+.+-++|+|+||||||+.....+++..+ ..++++.++.|.|-.|..+++.+. .+....|-.|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 5566677777788889999999999999998888887764 346789999999988888866554 4555556667
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-ccccc-HHHHHHHHHHHcCCCCeE
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEH-FASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~-~~~~~~~i~~~~~~~~q~ 271 (337)
++.+... ........|-++|.|.|++.+++ +..|+.+++|||||||. -++.. ....+..++...+...++
T Consensus 127 GY~iRfe------~~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFE------SKVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEee------ccCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 6665532 23344568999999999999987 55699999999999995 33322 334555666677777999
Q ss_pred EEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 272 i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
|+||||+..+ .+..++.+.-++.++.+. ..+.-+|
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~---fPVei~Y 233 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRT---YPVEIRY 233 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCc---cceEEEe
Confidence 9999999854 344566766666654432 3344445
No 100
>KOG0948|consensus
Probab=99.60 E-value=3.6e-15 Score=140.98 Aligned_cols=168 Identities=22% Similarity=0.239 Sum_probs=130.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.+.|+|..||..+-++.+|+|+|.|.+|||.++-.++...+- .+-||||..|-++|.+|-++.+..=. -.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------~kQRVIYTSPIKALSNQKYREl~~EF----~D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------EKQRVIYTSPIKALSNQKYRELLEEF----KD 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------hcCeEEeeChhhhhcchhHHHHHHHh----cc
Confidence 467999999999999999999999999999998877777763 24589999999999999988877633 25
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
|++..|+... +.....+|+|.+.|..++.+. .--++.+.|||+||+|.|-+...+-.+..-+-.+|.+.+.+
T Consensus 199 VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeecceee-------CCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 6666675443 334579999999999999874 33478899999999999877653333333344578899999
Q ss_pred EEeecCchhHHH--HHHhhCCCCeEEEe
Q psy3143 273 LFSATMTDAVND--LVSVSLTRPVRVFV 298 (337)
Q Consensus 273 ~~SAT~~~~~~~--~~~~~~~~p~~i~~ 298 (337)
++|||+|++.+- .+...-+.|..|.-
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY 298 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY 298 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe
Confidence 999999998653 34444456766554
No 101
>KOG0920|consensus
Probab=99.59 E-value=6.3e-14 Score=138.36 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=137.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
..+.+....-...++.+.+.+..+.+.+.++|+|.||+|||+.....+++...... ...++++..|+|--|..++++
T Consensus 162 ~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 162 YKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISVAER 238 (924)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHHHHH
Confidence 33333333334457888888999999999999999999999999998988876444 467799999999988888765
Q ss_pred HH-HHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-cccccHHHHHH
Q psy3143 182 TR-QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEHFASQMK 259 (337)
Q Consensus 182 ~~-~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~~~~~~~ 259 (337)
.. +.+...+-.|+...+..+.. .....+++||.|.|++.+.. ...+..+.+||+||+|. -.+..|.-.+.
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHH
Confidence 55 34444565666655543322 22257999999999999987 55689999999999995 23334444444
Q ss_pred HHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC
Q psy3143 260 EIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN 301 (337)
Q Consensus 260 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 301 (337)
+.+-..+++.++|+||||+. .+.++.|+...-++.+...
T Consensus 311 k~lL~~~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~gr 349 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLD---AELFSDYFGGCPVITIPGR 349 (924)
T ss_pred HHHhhhCCCceEEEeeeecc---hHHHHHHhCCCceEeecCC
Confidence 44444568999999999998 5567788888888887654
No 102
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.59 E-value=5.4e-14 Score=137.50 Aligned_cols=219 Identities=21% Similarity=0.182 Sum_probs=142.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
+-+.+.+.....|+..|.--...++.|+++-+.||||.|||+--++..+-.. ..+.|++||+||+.|+.|+++.
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a------~kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA------KKGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH------hcCCeEEEEecCHHHHHHHHHH
Confidence 3344455544589999999999999999999999999999976544333322 1367899999999999999999
Q ss_pred HHHHhhccC-cEEEE-EeCCccHHH----HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--
Q psy3143 182 TRQLAQFTS-VEVAL-SVGGLEVKV----QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-- 253 (337)
Q Consensus 182 ~~~l~~~~~-~~v~~-~~~~~~~~~----~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-- 253 (337)
+.+++...+ ..+.+ +++....+. ..+..+.++||+|+|..-|...+..- .--++++|++|.+|.++..+
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhcccc
Confidence 999987665 44333 555544333 23444567999999999888766541 11368999999999876422
Q ss_pred ---------HHH-------HHHHHHH------------------------HcCCCCeEEEEeecCchhHH--HHHHhhCC
Q psy3143 254 ---------FAS-------QMKEIIR------------------------LCSRTRQTMLFSATMTDAVN--DLVSVSLT 291 (337)
Q Consensus 254 ---------~~~-------~~~~i~~------------------------~~~~~~q~i~~SAT~~~~~~--~~~~~~~~ 291 (337)
|.. .+..+.. .-.+..++++.|||..+.-. .+++..+
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl- 300 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL- 300 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh-
Confidence 111 1111111 11245689999999876532 2233222
Q ss_pred CCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHHhhhcCCC
Q psy3143 292 RPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLRENC 336 (337)
Q Consensus 292 ~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ll~~~~~ 336 (337)
-+.++.......+|...|+.... ..+...|-..|+.|.+
T Consensus 301 ---gFevG~~~~~LRNIvD~y~~~~~---~e~~~elvk~lG~GgL 339 (1187)
T COG1110 301 ---GFEVGSGGEGLRNIVDIYVESES---LEKVVELVKKLGDGGL 339 (1187)
T ss_pred ---CCccCccchhhhheeeeeccCcc---HHHHHHHHHHhCCCeE
Confidence 23444455566777777765422 4454445555555554
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.58 E-value=1e-13 Score=120.85 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
++++.|+.+-..+ .+.++.+++|-||+|||......+-..+ ..|+++.|..|....|..++.+++. .+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al------~~G~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL------NQGGRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH------hcCCeEEEecCcccchHHHHHHHHH--hh
Confidence 4688998876554 4567999999999999998655554444 2588999999999999999999987 44
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
.+..+.+++|+...... ..++|+|..+|+++-.. ++++||||+|...-..-......+.+.....
T Consensus 169 ~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA--------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHhh--------ccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 56788899987664432 38999999999986533 6899999999864332122233344555667
Q ss_pred CeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
.-+|.+|||.+..+.+-+... +-..+.++.+.-..+-..-.|+++.+.
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~ 281 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNW 281 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccH
Confidence 789999999998887766542 333344444333333334446666554
No 104
>KOG0922|consensus
Probab=99.57 E-value=6.2e-14 Score=131.96 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH-HHHHHhhccCcEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLAQFTSVEV 193 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~l~~~~~~~v 193 (337)
..+-.+.+..+-.++-+||.|+||||||+.....+.+..+. ..+++.+..|.|-.|..+++ +..++....|-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 55666778888888999999999999999977777766532 34459999999999998865 4445666667777
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc--cccccHHHHHHHHHHHcCCCCeE
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR--MLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~--l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
++.+.- .........|.+.|.|.|++.+.. +..|+.+++|||||||. +...-....++.+++. ++..++
T Consensus 128 GY~IRF------ed~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lkl 198 (674)
T KOG0922|consen 128 GYTIRF------EDSTSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKL 198 (674)
T ss_pred eeEEEe------cccCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceE
Confidence 666542 222223458999999999998877 55689999999999995 2222233444444443 345789
Q ss_pred EEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 272 MLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 272 i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
|+||||+.. +.+..|+.+-.++.++.
T Consensus 199 IimSATlda---~kfS~yF~~a~i~~i~G 224 (674)
T KOG0922|consen 199 IIMSATLDA---EKFSEYFNNAPILTIPG 224 (674)
T ss_pred EEEeeeecH---HHHHHHhcCCceEeecC
Confidence 999999984 34556777655555544
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.56 E-value=6.2e-14 Score=144.22 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=106.6
Q ss_pred CCChHHHHHHHHHHh----C-CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 112 IYPTPIQAATIPVAL----L-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..++++|..|+..+. . .+.++++++||||||.+++. ++..++... ...++|||+|+++|+.|....+..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~---~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK---RFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC---ccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 358999999998765 2 36899999999999988544 444444322 24689999999999999999888764
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC----CCCCCCCccEEEEeccccccc------c----
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT----PSFSLSDIEVLVLDEADRMLD------E---- 252 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~~~~iViDEad~l~~------~---- 252 (337)
......+..+++..... .........|+|+|...|...+... ..+.+..+++||+||||+-.. .
T Consensus 488 ~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred cccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 22221111111111111 1112234589999999987765321 124577899999999998431 0
Q ss_pred -----cHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 253 -----HFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 253 -----~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
.+...+..++.+.. ...|+||||+...
T Consensus 566 ~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~ 597 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD--AVKIGLTATPALH 597 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC--ccEEEEecCCccc
Confidence 12355666666553 4679999998643
No 106
>KOG0925|consensus
Probab=99.55 E-value=2.8e-13 Score=122.95 Aligned_cols=195 Identities=21% Similarity=0.192 Sum_probs=145.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..++|...+.+++..+-|++..-...+..+...+..+.+++-+++.|.||||||.....+++...+... ..+.+.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-----~~v~CT 97 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-----TGVACT 97 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----cceeec
Confidence 368899999999999999888776677777788888888899999999999999998888887765332 458999
Q ss_pred cCCHHHHHHHHH-HHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQ-VTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
.|.|..|.++.. +..++.-..|..|+..+.-..+......++ +||.|+|++-..+ ...+..+.+||+||||
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk------y~tDgmLlrEams--~p~l~~y~viiLDeah 169 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK------YCTDGMLLREAMS--DPLLGRYGVIILDEAH 169 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHH------HhcchHHHHHHhh--CcccccccEEEechhh
Confidence 999999999864 444555455666665554443333333333 5899999987776 4458999999999999
Q ss_pred c--cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 248 R--MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 248 ~--l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
. +........++.++... +..++|+||||+-.. .+..|+.++-.+.++.
T Consensus 170 ERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG 220 (699)
T ss_pred hhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC
Confidence 5 22333445566666655 488999999998743 3557888888888865
No 107
>KOG2340|consensus
Probab=99.52 E-value=2.1e-14 Score=131.25 Aligned_cols=206 Identities=25% Similarity=0.284 Sum_probs=139.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEc-CCCCch--hHHhHHHHHHHhhc-------------------------CCCCC
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCA-ATGTGK--TAAFMLPILERLLY-------------------------KPRDD 160 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a-~TGsGK--T~~~~~~~l~~l~~-------------------------~~~~~ 160 (337)
..-..+|+.|.+.+..+.+++|++..- ..+.|+ +-.|.+.+++++++ +.++.
T Consensus 212 K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 212 KKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 345678999999999999999998632 224455 55677888887752 12334
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE-------------------------------EEEeCCcc--------
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV-------------------------------ALSVGGLE-------- 201 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v-------------------------------~~~~~~~~-------- 201 (337)
.+|+||||||+|+.|..+.+.+..+..+.+-.- .++.|.+.
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 578999999999999999999998854432210 01111111
Q ss_pred -----HHHHHHHHhcCCCEEEECcHHHHHHHhcCCC----CC-CCCccEEEEecccccccccHHHHHHHHHHHcC-----
Q psy3143 202 -----VKVQESVLRKCPDIVIATPGRLLDHLHNTPS----FS-LSDIEVLVLDEADRMLDEHFASQMKEIIRLCS----- 266 (337)
Q Consensus 202 -----~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----~~-l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~----- 266 (337)
.+..... ...||+||+|-.|...+.+.+. ++ |+++.++|||.||.|+.++|.+... |+..++
T Consensus 372 ftkKtikLys~f--y~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~-ifdHLn~~P~k 448 (698)
T KOG2340|consen 372 FTKKTIKLYSKF--YKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLH-IFDHLNLQPSK 448 (698)
T ss_pred HHHHHHHHHhhh--cccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHH-HHHHhhcCccc
Confidence 1111111 3469999999999999985533 22 7999999999999999999865443 443331
Q ss_pred -------------------CCCeEEEEeecCchhHHHHHHhhCCCC-eEEEeCC------CccccCCeeEEEEEecC
Q psy3143 267 -------------------RTRQTMLFSATMTDAVNDLVSVSLTRP-VRVFVDN------NHEVALNLRQEFVSFSN 317 (337)
Q Consensus 267 -------------------~~~q~i~~SAT~~~~~~~~~~~~~~~p-~~i~~~~------~~~~~~~i~q~~~~~~~ 317 (337)
.-+|+++||+.-.+.++.++..++.|. ..|...+ .......|.|.|.++..
T Consensus 449 ~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~ 525 (698)
T KOG2340|consen 449 QHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEV 525 (698)
T ss_pred ccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheec
Confidence 124999999999999999998877763 2222222 22333557787777654
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=5.5e-14 Score=138.27 Aligned_cols=129 Identities=24% Similarity=0.281 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|. +-.+...+.-|+.++||.|||+++.+|++...+ .+..|.||+|++.||.|..+++..+..++++.
T Consensus 82 ~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al------~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGls 153 (908)
T PRK13107 82 RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL------TGKGVHVITVNDYLARRDAENNRPLFEFLGLT 153 (908)
T ss_pred CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 4666664 444444556689999999999999999987765 24459999999999999999999999999999
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCCCCC-----CCCccEEEEeccccccc
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTPSFS-----LSDIEVLVLDEADRMLD 251 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~-----l~~~~~iViDEad~l~~ 251 (337)
++++.++.+.... .-...+||++|||+.| .+++..+-.+. ...+.++||||||.|+-
T Consensus 154 v~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 154 VGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred EEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9999998875332 2334679999999999 88886642222 37889999999998763
No 109
>KOG0923|consensus
Probab=99.48 E-value=5.9e-13 Score=124.76 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=123.8
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH-HHHHHHhhc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY-QVTRQLAQF 188 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~-~~~~~l~~~ 188 (337)
......++-.+.+.++...+-++|.|.||||||+.....+.+.-+.. .+.++-+..|.|..|..+. ++...++-.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 33444566667777888888899999999999999877777665422 2455999999999999985 566677766
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc--cccccHHHHHHHHHHHcC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR--MLDEHFASQMKEIIRLCS 266 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~--l~~~~~~~~~~~i~~~~~ 266 (337)
+|..|++.+.-..+ .....-|-++|.|+|++-+.. ..+|+++++|||||||. +...-....+..|.+..
T Consensus 338 LG~eVGYsIRFEdc------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R- 408 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDC------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR- 408 (902)
T ss_pred cccccceEEEeccc------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-
Confidence 66666655542222 223346889999999998877 56799999999999995 22233445556665554
Q ss_pred CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 267 ~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
+...+++.|||+..+ -++.|+.+.-++.++.
T Consensus 409 pdLKllIsSAT~DAe---kFS~fFDdapIF~iPG 439 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE---KFSAFFDDAPIFRIPG 439 (902)
T ss_pred CcceEEeeccccCHH---HHHHhccCCcEEeccC
Confidence 588999999999854 3445666544444443
No 110
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.47 E-value=1.3e-12 Score=133.01 Aligned_cols=146 Identities=24% Similarity=0.249 Sum_probs=104.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHH----HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIP----VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
+++.+.+.+...||. +++.|.+.+. .+..++++++.||||+|||++|++|++.... .+.+++|.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHH
Confidence 445677777778886 7899998665 5567889999999999999999999988763 2458999999999
Q ss_pred HHHHHHH-HHHHHhhccC--cEEEEEeCCccHH---HHH-----------------------------------------
Q psy3143 174 LGVQVYQ-VTRQLAQFTS--VEVALSVGGLEVK---VQE----------------------------------------- 206 (337)
Q Consensus 174 La~q~~~-~~~~l~~~~~--~~v~~~~~~~~~~---~~~----------------------------------------- 206 (337)
|..|+.. .+..+.+..+ ++++.+.|+.++- ...
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999854 5666665544 6666666554320 000
Q ss_pred ---------------------------HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 207 ---------------------------SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 207 ---------------------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
+.....++|+|+.-..|+..+.... ..+....++||||||++.+
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHH
Confidence 0000125899999888887764432 2356678999999999764
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.43 E-value=2.6e-12 Score=127.17 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHh----C------CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVAL----L------GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
|...|..|+..+. . .+..+++.+||||||+..+..+...+ . ....+++|||+|+.+|..|+.+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~---~~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E---LLKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h---hcCCCeEEEEECcHHHHHHHHHHHH
Confidence 6788999987653 2 25799999999999998765543333 2 1246789999999999999999998
Q ss_pred HHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcC-CCCCCCCc-cEEEEecccccccccHHHHHHH
Q psy3143 184 QLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNT-PSFSLSDI-EVLVLDEADRMLDEHFASQMKE 260 (337)
Q Consensus 184 ~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~-~~iViDEad~l~~~~~~~~~~~ 260 (337)
.+..... .+..+.......+. ....|+|+|.+.+...+... ..+....- -+||+||||+.....|...+.
T Consensus 315 ~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~- 387 (667)
T TIGR00348 315 SLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK- 387 (667)
T ss_pred hhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH-
Confidence 8763211 11112222223232 33589999999998644321 11111111 289999999865444433333
Q ss_pred HHHHcCCCCeEEEEeecCch
Q psy3143 261 IIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 261 i~~~~~~~~q~i~~SAT~~~ 280 (337)
+.++ +...++||||+-.
T Consensus 388 --~~~p-~a~~lGfTaTP~~ 404 (667)
T TIGR00348 388 --KALK-NASFFGFTGTPIF 404 (667)
T ss_pred --hhCC-CCcEEEEeCCCcc
Confidence 3344 5679999999853
No 112
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.42 E-value=3.4e-12 Score=123.66 Aligned_cols=73 Identities=25% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh-hc--cCcEEEEEeC
Q psy3143 122 IPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA-QF--TSVEVALSVG 198 (337)
Q Consensus 122 i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~-~~--~~~~v~~~~~ 198 (337)
...+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +. .++++.++.|
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~----~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER----PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc----cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 34456778999999999999999999999887421 25789999999999999999888877 33 2455555444
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.41 E-value=2.8e-12 Score=128.29 Aligned_cols=184 Identities=19% Similarity=0.174 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHhCC---C-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVALLG---R-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~---~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+.+.|..++..+... . .+++.||||+|||.+.+++++..+... .....|++++.|++.++.++++.++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 3488999999887754 3 678999999999999999998887542 225789999999999999999999987755
Q ss_pred cCcEEEEEeCCccHHHHHHH--------------HhcCCCEEEECcHHHHHHHhcCCCCC-C--CCccEEEEeccccccc
Q psy3143 189 TSVEVALSVGGLEVKVQESV--------------LRKCPDIVIATPGRLLDHLHNTPSFS-L--SDIEVLVLDEADRMLD 251 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~--------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~-l--~~~~~iViDEad~l~~ 251 (337)
........++.......... ......+.++||-...........+. + -..+.+|+||+|.+.+
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 44333323333322221111 00113456667666655332222222 1 1247899999998877
Q ss_pred ccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 252 EHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 252 ~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
......+..++..+ .-+..+|+||||+|+...+.+...+.....+..
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~ 400 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE 400 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceec
Confidence 73333333333333 447889999999999999988877766555554
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.40 E-value=4.6e-12 Score=127.74 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=95.7
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-HHHHHHHhh
Q psy3143 113 YPTPIQAATIPV----ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-YQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~l~~ 187 (337)
.+++.|.+.... +..++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+ .+.+..+.+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKAIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 578889884443 34567899999999999999999988754 256899999999999999 577888888
Q ss_pred ccCcEEEEEeCCccHHHH---HHH-----------------------------------------H--------------
Q psy3143 188 FTSVEVALSVGGLEVKVQ---ESV-----------------------------------------L-------------- 209 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~---~~~-----------------------------------------~-------------- 209 (337)
..++.+..+.|+.++-.. ... +
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 778877777765542100 000 0
Q ss_pred -------------hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 210 -------------RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 210 -------------~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
....||+|+.-..|+..+...+ .+..++++||||||++.
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLM 449 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhH
Confidence 0124899999888877664432 36789999999999975
No 115
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=2.2e-12 Score=100.33 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=82.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
|+-.++...+|+|||.-.+.-++...+. .+.|+|||.|||.++..+.+.++.. ++++.....+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-----~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~------- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-----RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR------- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-----TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-----ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec-------
Confidence 4456789999999999766655554432 4778999999999999988877643 23332211110
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc--HHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH--FASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+.-|-|+|-+.+.+.+.+ ...+.++++||+||||..-..+ +...+..... ...+.+|+||||.|...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCC
Confidence 1123346888999999888876 3447899999999999754333 2233333322 23468999999998654
No 116
>KOG0924|consensus
Probab=99.38 E-value=9.5e-12 Score=117.15 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=113.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~ 190 (337)
...+..+.+.+..+-.++-++|.|.||||||......+++.-+ ...+.+.+..|.|..|..+++... ++...+|
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY-----~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY-----ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc-----ccCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 3445566666666667788999999999999997777766543 235578899999999999876554 5655556
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc-ccccc-HHHHHHHHHHHcCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR-MLDEH-FASQMKEIIRLCSRT 268 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~-l~~~~-~~~~~~~i~~~~~~~ 268 (337)
-.|++.+.-. .......-|-+.|.|.|++-... .-.|..+++||+||||. -++.. ....++.++ .-.++
T Consensus 430 ~~VGYsIRFE------dvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrd 500 (1042)
T KOG0924|consen 430 DTVGYSIRFE------DVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRD 500 (1042)
T ss_pred cccceEEEee------ecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHH-Hhhcc
Confidence 6665554422 22223457999999999986654 44588999999999995 22222 112222222 23457
Q ss_pred CeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
.++|++|||+... -+..|+.+--.+.+
T Consensus 501 lKliVtSATm~a~---kf~nfFgn~p~f~I 527 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQ---KFSNFFGNCPQFTI 527 (1042)
T ss_pred ceEEEeeccccHH---HHHHHhCCCceeee
Confidence 8999999999843 23345554333333
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.7e-11 Score=118.50 Aligned_cols=171 Identities=21% Similarity=0.226 Sum_probs=120.3
Q ss_pred CChHHHHHHHHHHhCC----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVALLG----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
..++-|..++..+... +..++.|.||||||.+|+-.+-..+. .|..+|+|+|-..|..|+...++...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------~GkqvLvLVPEI~Ltpq~~~rf~~rF-- 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------QGKQVLVLVPEIALTPQLLARFKARF-- 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------cCCEEEEEeccccchHHHHHHHHHHh--
Confidence 4578899999988655 58899999999999999887777773 46789999999999999999888755
Q ss_pred cCcEEEEEeCCccHHHH----HHHHhcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccc---cc--HHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQ----ESVLRKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLD---EH--FASQM 258 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~----~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~---~~--~~~~~ 258 (337)
+..+..++++.+.... .+.......|+|||= ...| .|+++.+|||||-|.-.. .+ |...=
T Consensus 270 -g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR---------SAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 -GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR---------SALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred -CCChhhhcccCChHHHHHHHHHHhcCCceEEEEec---------hhhcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 4677777777655444 344446689999992 2222 388999999999996432 11 22233
Q ss_pred HHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc
Q psy3143 259 KEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303 (337)
Q Consensus 259 ~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 303 (337)
..+++....++++|+-|||.+= +.+...--.....+....+..
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~ 382 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAG 382 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEcccccc
Confidence 3455555678999999999664 443332222234444444433
No 118
>KOG0950|consensus
Probab=99.36 E-value=2.5e-12 Score=125.38 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=130.7
Q ss_pred CCHHHHHH-HHhCCCCCChHHHHHHH--HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 98 LSRPLLKA-IGALNYIYPTPIQAATI--PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 98 l~~~l~~~-l~~~~~~~p~~~Q~~~i--~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
+.+.+... .+..|....+.||..++ |.++.+++.|+.+||+.|||+++-+-++..++.. +..++.++|....
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-----rr~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-----RRNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----hhceeEecceeeh
Confidence 44444444 45568899999999997 5677888999999999999999988888877643 3459999999988
Q ss_pred HHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEEeccccccccc
Q psy3143 175 GVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 175 a~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iViDEad~l~~~~ 253 (337)
+..-...+..+....|+.+..+.|+...... ...-.+.|||.++-..++..- ..-.+..+.+||+||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 8887788888888888888877765432211 222389999998766554321 01236779999999999999888
Q ss_pred HHHHHHHHHHHc-----CCCCeEEEEeecCchh
Q psy3143 254 FASQMKEIIRLC-----SRTRQTMLFSATMTDA 281 (337)
Q Consensus 254 ~~~~~~~i~~~~-----~~~~q~i~~SAT~~~~ 281 (337)
....+..++... ....|+|+||||+++.
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 776666665432 3346799999999974
No 119
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.35 E-value=1.5e-11 Score=113.80 Aligned_cols=161 Identities=23% Similarity=0.346 Sum_probs=110.4
Q ss_pred CCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-C--------------------------------------------
Q psy3143 156 KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-S-------------------------------------------- 190 (337)
Q Consensus 156 ~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~-------------------------------------------- 190 (337)
+.++..+|+||||+|+|..|..+.+.+..+.... .
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 4566679999999999999999999888876431 1
Q ss_pred -cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC----CCCC-CCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 191 -VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT----PSFS-LSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 191 -~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~-l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
+++++.+.+...+..... ..+|||||+|-.|...+... ...+ |+++.++|+|.||.|++++|.. +..+++.
T Consensus 111 ~FrlGik~trk~ikLys~F--y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~ 187 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDF--YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEH 187 (442)
T ss_pred eEEEeEEEecCeeeeeccc--ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHH
Confidence 011222211111111111 23599999999999988742 2333 8999999999999999999854 4444444
Q ss_pred cC------------------------CCCeEEEEeecCchhHHHHHHhhCCCC-eEEEeCC--C-----ccccCCeeEEE
Q psy3143 265 CS------------------------RTRQTMLFSATMTDAVNDLVSVSLTRP-VRVFVDN--N-----HEVALNLRQEF 312 (337)
Q Consensus 265 ~~------------------------~~~q~i~~SAT~~~~~~~~~~~~~~~p-~~i~~~~--~-----~~~~~~i~q~~ 312 (337)
++ .-+|+|++|+..++++..++...+.|. ..+.+.. . ......|+|.|
T Consensus 188 lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F 267 (442)
T PF06862_consen 188 LNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVF 267 (442)
T ss_pred hccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEE
Confidence 32 235999999999999999999866653 2223222 2 24457899999
Q ss_pred EEecCcc
Q psy3143 313 VSFSNID 319 (337)
Q Consensus 313 ~~~~~~~ 319 (337)
.+++...
T Consensus 268 ~r~~~~s 274 (442)
T PF06862_consen 268 QRFDCSS 274 (442)
T ss_pred EEecCCC
Confidence 9987543
No 120
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.31 E-value=1.1e-09 Score=111.63 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=104.3
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+.++|..++..++ +|.+.|++-.+|.|||+..+..+ ..+... .+..+.+|||||. .+..++...+..++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~--~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p- 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEY--RGITGPHMVVAPK-STLGNWMNEIRRFCP- 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHh--cCCCCCEEEEeCh-HHHHHHHHHHHHHCC-
Confidence 57899999998875 57789999999999999864433 333211 1224569999997 445666667776653
Q ss_pred cCcEEEEEeCCccHHHHH---HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 189 TSVEVALSVGGLEVKVQE---SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~---~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
.+.+..++|........ ......++|+|+|.+.+..... .+.--.+.+|||||||++-... ..+...++.+
T Consensus 244 -~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L 317 (1033)
T PLN03142 244 -VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLF 317 (1033)
T ss_pred -CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH---HhccCCCCEEEEcCccccCCHH--HHHHHHHHHh
Confidence 45666666654432221 1123457999999998876432 2223457899999999975433 3344444555
Q ss_pred CCCCeEEEEeecCc-hhHHHHH
Q psy3143 266 SRTRQTMLFSATMT-DAVNDLV 286 (337)
Q Consensus 266 ~~~~q~i~~SAT~~-~~~~~~~ 286 (337)
.... .+++|+|+- +.+.++.
T Consensus 318 ~a~~-RLLLTGTPlqNnl~ELw 338 (1033)
T PLN03142 318 STNY-RLLITGTPLQNNLHELW 338 (1033)
T ss_pred hcCc-EEEEecCCCCCCHHHHH
Confidence 4443 477899965 3444443
No 121
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.30 E-value=4.7e-11 Score=106.60 Aligned_cols=72 Identities=28% Similarity=0.210 Sum_probs=57.4
Q ss_pred ChHHHHHHH----HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATI----PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 114 p~~~Q~~~i----~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|++.|.+.+ ..+..|.++++.||||+|||++|++|++.++........+.+++|+++|..+..|....++++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 455678899999999999999999999987754332223458999999999988887777655
No 122
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.30 E-value=4.7e-11 Score=106.60 Aligned_cols=72 Identities=28% Similarity=0.210 Sum_probs=57.4
Q ss_pred ChHHHHHHH----HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATI----PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 114 p~~~Q~~~i----~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|++.|.+.+ ..+..|.++++.||||+|||++|++|++.++........+.+++|+++|..+..|....++++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 455678899999999999999999999987754332223458999999999988887777655
No 123
>KOG0949|consensus
Probab=99.30 E-value=1.1e-11 Score=120.81 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=112.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-Cc
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SV 191 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~ 191 (337)
.|..||.+.+..+-.+..++|.|||.+|||.+-.. +++..+... ...-+|+++||.+|+.|+...+....... -.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRes---D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRES---DSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhhc---CCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 57899999999999999999999999999987544 445554332 35679999999999999977666554322 22
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC--CCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT--PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
+...+.|......+.. .-+|+|+|+-|+.+-.++... .......++++|+||+|.+....-......++-.. .|
T Consensus 587 rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PC 662 (1330)
T ss_pred cchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CC
Confidence 3333333332222211 235799999999999888663 23346789999999999886554323333333333 68
Q ss_pred eEEEEeecCchh
Q psy3143 270 QTMLFSATMTDA 281 (337)
Q Consensus 270 q~i~~SAT~~~~ 281 (337)
.++++|||+.+.
T Consensus 663 P~L~LSATigN~ 674 (1330)
T KOG0949|consen 663 PFLVLSATIGNP 674 (1330)
T ss_pred CeeEEecccCCH
Confidence 899999999875
No 124
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.26 E-value=5e-11 Score=107.30 Aligned_cols=149 Identities=21% Similarity=0.162 Sum_probs=85.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
..+.++++..+|+|||...+..+. .+...........+|||+|. .+..|+...+..+......++..+.|........
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 345789999999999988766544 33322222223359999999 7778888888887755466777776665222222
Q ss_pred HHHhcCCCEEEECcHHHHHHHhc--CCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHN--TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.......+|+|+|.+.+...... ...+.--.+++||+||+|.+-+.. ......+..+. ....+++|||+-.
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-SS
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccccccccc-cceEEeecccccc
Confidence 22334569999999998810000 001112348999999999883222 23333333344 5667889999643
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.22 E-value=5.9e-11 Score=114.75 Aligned_cols=167 Identities=21% Similarity=0.252 Sum_probs=113.6
Q ss_pred CCChHHHHHHHHHH----hCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 112 IYPTPIQAATIPVA----LLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~----~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..|+.+|..||..+ ..|+ .+++++.||+|||..+ +.++..|++.. .-.|+|+|+-++.|+.|.+..+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~---~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG---WVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc---hhheeeEEechHHHHHHHHHHHHHhC
Confidence 45789999998764 3454 6999999999999886 44556665332 35689999999999999998888766
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC----CCCCCCCccEEEEecccccccccHHHHHHHHH
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT----PSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~ 262 (337)
.+-. .+..+.+.... ..+.|.|+|-..+...+... ..+....+++|||||||+-....| ..|+
T Consensus 240 P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~----~~I~ 306 (875)
T COG4096 240 PFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEW----SSIL 306 (875)
T ss_pred CCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhh----HHHH
Confidence 4422 22222221111 13589999999998877543 233456699999999998543333 3555
Q ss_pred HHcCCCCeEEEEeecCchhHHHHHHhhC-CCCeEEE
Q psy3143 263 RLCSRTRQTMLFSATMTDAVNDLVSVSL-TRPVRVF 297 (337)
Q Consensus 263 ~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~p~~i~ 297 (337)
.++.... ++++||+...+..-...|+ ..|+..+
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~Y 340 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAY 340 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceee
Confidence 5554333 3449999887776665666 6666655
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=9.5e-11 Score=115.88 Aligned_cols=129 Identities=21% Similarity=0.198 Sum_probs=100.2
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-+|+++|. +-.+.....-|+...||+|||+++.+|++-..+ .|..|-|++||.-||.|-+.++..+..++++
T Consensus 81 m~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 81 MRHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 45677775 444444566788999999999999999876654 4677999999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
.++++.+..........+. +||++||..-+ .++|+.+ .......+.++||||+|.++
T Consensus 153 ~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999988877665555554 69999999875 3333321 11124789999999999865
No 127
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.6e-10 Score=113.70 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=104.1
Q ss_pred HHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 105 AIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 105 ~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+..+.--.+|+++|.-+--.+..|+ |....||+|||+++.+|++...+ .|..|-+++||.-||.|-+.++..
T Consensus 72 a~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al------~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 72 GAKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL------TGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred HHHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH------cCCCeEEEeccHHHHHhhHHHHHH
Confidence 3333333568888877766555555 89999999999999998887775 466799999999999999999999
Q ss_pred HhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHH-HHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLL-DHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
+..++|+.++++.++.........+ .+||++||..-+- ++|..+ .......+.+.||||+|.++
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999998877666554444 4599999997652 333321 11124678899999999865
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=2.4e-10 Score=110.59 Aligned_cols=134 Identities=22% Similarity=0.172 Sum_probs=104.3
Q ss_pred HhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 107 GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 107 ~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.+.-.-+|+.+|.-..-.++.|+ |+...||+|||++..+|++...+ .|..|-|++|+.-||.|-+.++..+.
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33333568999988888777664 77999999999999998887765 46679999999999999999999999
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-----HHHHhcC-CCCCCCCccEEEEecccccc
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-----LDHLHNT-PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~~-~~~~l~~~~~iViDEad~l~ 250 (337)
.++++.++++.++.........+ .+||+++|..-+ .+.+... .......+.+.||||+|.++
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999999998887766555444 459999998754 3333211 12235678999999999865
No 129
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.19 E-value=9.8e-10 Score=95.88 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=99.5
Q ss_pred HHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 106 IGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 106 l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
..+.-...|++.|.-+.-.+..|+ |+...||-|||++..+|++-..+ .|..|=|++.+..||.+=+.++..+
T Consensus 70 ~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 70 ARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 333344578999998887776665 99999999999998887766654 3667999999999999999999999
Q ss_pred hhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHH-HHHhcC----CCC-CCCCccEEEEecccccc
Q psy3143 186 AQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLL-DHLHNT----PSF-SLSDIEVLVLDEADRML 250 (337)
Q Consensus 186 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~----~~~-~l~~~~~iViDEad~l~ 250 (337)
....++.++....+.........+.. +|++||...+. +++..+ ... ....+.++||||||.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y~~--dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAYAA--DIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHHHS--SEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHHhC--cccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999998886554444444 89999998774 344321 111 25788999999999765
No 130
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.13 E-value=5e-10 Score=113.45 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.|.|+|..++..++.. ..+++.-++|.|||..+.+.+-..+.. . ...++|||||+ .|..|+...+.... +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g---~~~rvLIVvP~-sL~~QW~~El~~kF---~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-G---RAERVLILVPE-TLQHQWLVEMLRRF---N 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-C---CCCcEEEEcCH-HHHHHHHHHHHHHh---C
Confidence 4899999998776543 378999999999999887655554432 1 24579999998 78888776665432 3
Q ss_pred cEEEEEeCCccHHHHHH--HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc--cHHHHHHHHHHHcC
Q psy3143 191 VEVALSVGGLEVKVQES--VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE--HFASQMKEIIRLCS 266 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~--~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~--~~~~~~~~i~~~~~ 266 (337)
+...++.++........ ......+++|+|.+.+...-.....+.-..+++||+||||++-.. .-......+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 44443332221111000 111235899999887764211101122346899999999998521 10111222222222
Q ss_pred CCCeEEEEeecCch
Q psy3143 267 RTRQTMLFSATMTD 280 (337)
Q Consensus 267 ~~~q~i~~SAT~~~ 280 (337)
....++++|||+..
T Consensus 304 ~~~~~LLLTATP~q 317 (956)
T PRK04914 304 VIPGVLLLTATPEQ 317 (956)
T ss_pred ccCCEEEEEcCccc
Confidence 34468999999874
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.08 E-value=1.6e-09 Score=108.31 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=113.7
Q ss_pred HHHhCCCCCChHHHHHHHHHHhCCC--------CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 105 AIGALNYIYPTPIQAATIPVALLGR--------DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 105 ~l~~~~~~~p~~~Q~~~i~~~~~~~--------~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|++..-..-+.+|-+|+..+..-+ =+|--|.||||||++=.-.| ..| .....+.|..|-.--|.|..
T Consensus 400 ~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaL---sd~~~g~RfsiALGLRTLTL 475 (1110)
T TIGR02562 400 YFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YAL---RDDKQGARFAIALGLRSLTL 475 (1110)
T ss_pred hhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHh---CCCCCCceEEEEccccceec
Confidence 3433333445789999998876421 24556899999998743322 222 23345789999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHH-------------------------------------------Hhc--
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESV-------------------------------------------LRK-- 211 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-------------------------------------------~~~-- 211 (337)
|....+++-....+-..++++|+......... +..
T Consensus 476 QTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~ 555 (1110)
T TIGR02562 476 QTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDD 555 (1110)
T ss_pred cchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccCh
Confidence 99999988765556667777776544322110 000
Q ss_pred ------CCCEEEECcHHHHHHHhcC--CCCCCC----CccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecC
Q psy3143 212 ------CPDIVIATPGRLLDHLHNT--PSFSLS----DIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATM 278 (337)
Q Consensus 212 ------~~~Ilv~Tp~~l~~~l~~~--~~~~l~----~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~ 278 (337)
...|+|||+..++...... +...+. .-+.|||||+|.+-... ...+.+++..+ .....+++||||+
T Consensus 556 k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 556 KEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred hhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1379999999999877321 122111 13689999999764333 23344444432 2367899999999
Q ss_pred chhHHHHH
Q psy3143 279 TDAVNDLV 286 (337)
Q Consensus 279 ~~~~~~~~ 286 (337)
|+.+...+
T Consensus 635 P~~l~~~L 642 (1110)
T TIGR02562 635 PPALVKTL 642 (1110)
T ss_pred CHHHHHHH
Confidence 99976543
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.08 E-value=2.3e-09 Score=110.18 Aligned_cols=83 Identities=24% Similarity=0.164 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHH----HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH-HHHHHh
Q psy3143 112 IYPTPIQAATIPV----ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~l~ 186 (337)
-.+++-|.+.+.. +..++.+++.|+||+|||++|++|++.... ..+.+++|-++|+.|-.|+.. .+-.+.
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~-----~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK-----KKEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh-----ccCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 4689999986554 346778999999999999999999986653 135689999999999999865 233333
Q ss_pred hcc--CcEEEEEeCC
Q psy3143 187 QFT--SVEVALSVGG 199 (337)
Q Consensus 187 ~~~--~~~v~~~~~~ 199 (337)
+.. +++++++.|.
T Consensus 331 ~~~~~~~~~~~lKGr 345 (928)
T PRK08074 331 KIFPFPVEAALLKGR 345 (928)
T ss_pred HHcCCCceEEEEEcc
Confidence 222 3455555443
No 133
>KOG0951|consensus
Probab=99.07 E-value=2.7e-10 Score=113.77 Aligned_cols=151 Identities=19% Similarity=0.317 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH-HHHHHhhccCcE
Q psy3143 115 TPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLAQFTSVE 192 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~-~~~~l~~~~~~~ 192 (337)
.++|.++++.+.+. .++++++|+|||||.|+-++++. ...-.+++++.|..+.+..++. +-+++....|..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 88999999987654 58899999999999998777664 2357899999999999987754 555677778888
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-----HHHHHHHHHHHcCC
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-----FASQMKEIIRLCSR 267 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-----~~~~~~~i~~~~~~ 267 (337)
+..+.|..+.... +....+|+|+||.+.-.+ + ...++++.|.||+|.+.+.+ ....++.|..++-+
T Consensus 1218 ~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1218 IVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEK 1288 (1674)
T ss_pred EEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHh
Confidence 8888887765432 333348999999987654 2 36778999999999876432 11127777788888
Q ss_pred CCeEEEEeecCchh
Q psy3143 268 TRQTMLFSATMTDA 281 (337)
Q Consensus 268 ~~q~i~~SAT~~~~ 281 (337)
+.+++.+|..+.+.
T Consensus 1289 ~ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANA 1302 (1674)
T ss_pred heeEEEeehhhccc
Confidence 88888888887754
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.06 E-value=1e-09 Score=108.26 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=98.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
+|+++|.-. .+...+.-|+.+.||.|||+++.+|++-..+ .|..|-|++++..||.+-+.++..+..++|+.
T Consensus 76 r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs 147 (870)
T CHL00122 76 RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT 147 (870)
T ss_pred CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc
Confidence 477777554 4455677899999999999999999864443 36679999999999999999999999999999
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHH-----HHHHHhcC-CCCCCCCccEEEEecccccc
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGR-----LLDHLHNT-PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~-----l~~~l~~~-~~~~l~~~~~iViDEad~l~ 250 (337)
+++..++.........+. +||+++|..- |.+.+... .......+.+.||||+|.++
T Consensus 148 vg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999988877665544444 5999999964 34433211 11235678999999999865
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=3e-09 Score=104.97 Aligned_cols=129 Identities=22% Similarity=0.215 Sum_probs=100.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
-+|+++|. +-.+.....-|+.+.||-|||+++.+|++-..+ .|..|-||+++.-||.+-+.++..+..++|+
T Consensus 84 ~r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 84 MRHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CCcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 34666664 444545567789999999999999998876554 3666999999999999999999999999999
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-----HHHHhcC-CCCCCCCccEEEEecccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRL-----LDHLHNT-PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~~-~~~~l~~~~~iViDEad~l~ 250 (337)
.|++..++....... ....+||++||+..| .+.+... .......+.+.||||+|.++
T Consensus 156 tvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999988776554433 344569999999877 5555432 22346788999999999865
No 136
>KOG0385|consensus
Probab=99.02 E-value=7.4e-09 Score=99.27 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=109.8
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 112 IYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
..+.++|.+.+.++. +|-+.|+.-.+|-|||+.. |.++..+.... +-.+..||++|-..|... +..+.+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~--~~~GPfLVi~P~StL~NW----~~Ef~r 238 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK--GIPGPFLVIAPKSTLDNW----MNEFKR 238 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc--CCCCCeEEEeeHhhHHHH----HHHHHH
Confidence 357899999888764 5668999999999999875 33444443211 224458999999888553 344444
Q ss_pred cc-CcEEEEEeCCccHHHH--HH-HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHH
Q psy3143 188 FT-SVEVALSVGGLEVKVQ--ES-VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263 (337)
Q Consensus 188 ~~-~~~v~~~~~~~~~~~~--~~-~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~ 263 (337)
++ ++.+.+++|....... .. .....++|+|+|.+..+.-- ..+.--.++|+||||||++=... ..+..+++
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr 313 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILR 313 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHHHHH
Confidence 43 5888888888644322 22 22346899999998877531 12333468999999999986554 45667777
Q ss_pred HcCCCCeEEEEeecCchhHHHHHH
Q psy3143 264 LCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 264 ~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
.+....++++....+.+++-++..
T Consensus 314 ~f~~~nrLLlTGTPLQNNL~ELWa 337 (971)
T KOG0385|consen 314 EFKTDNRLLLTGTPLQNNLHELWA 337 (971)
T ss_pred HhcccceeEeeCCcccccHHHHHH
Confidence 777677766555556666655543
No 137
>KOG0387|consensus
Probab=99.01 E-value=4.8e-08 Score=94.18 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
+.++..+...| +++|+..+.++. ++..-|+.-.+|-|||...+.. +..+..... --..+|||||.
T Consensus 196 ~~vPg~I~~~L--------f~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S~k--~~~paLIVCP~ 264 (923)
T KOG0387|consen 196 FKVPGFIWSKL--------FPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHSGK--LTKPALIVCPA 264 (923)
T ss_pred ccccHHHHHHh--------hHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhccc--ccCceEEEccH
Confidence 55666665554 789999998765 4567899999999999874332 223322211 12569999997
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccH---------HHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEV---------KVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~---------~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
.+..|+.+.+..++. .++|..+++..+. ..... .......|+|+|...+.- ....+.-..+
T Consensus 265 -Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~---~~d~l~~~~W 338 (923)
T KOG0387|consen 265 -TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI---QGDDLLGILW 338 (923)
T ss_pred -HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc---cCcccccccc
Confidence 555676677776654 4677777765441 11111 111234799999765543 1123334568
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec-CchhHHHHHHh
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT-MTDAVNDLVSV 288 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT-~~~~~~~~~~~ 288 (337)
.|+|+||.|++=+.+- .+....+.++...++| +|.| +.+.+.++...
T Consensus 339 ~y~ILDEGH~IrNpns--~islackki~T~~RiI-LSGTPiQNnL~ELwsL 386 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPNS--KISLACKKIRTVHRII-LSGTPIQNNLTELWSL 386 (923)
T ss_pred cEEEecCcccccCCcc--HHHHHHHhccccceEE-eeCccccchHHHHHHH
Confidence 9999999999876652 3444444555455555 5555 55667666643
No 138
>KOG0391|consensus
Probab=98.90 E-value=1.4e-08 Score=100.95 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=108.1
Q ss_pred ChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 114 PTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
++.||+..+.++. ++-|-|+.-..|-|||..-+..+.+........+ -.||||||-.+..+ .-.|++++ .
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWG---PHLIVVpTsviLnW-EMElKRwc--P 689 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWG---PHLIVVPTSVILNW-EMELKRWC--P 689 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCC---CceEEeechhhhhh-hHHHhhhC--C
Confidence 3679999988764 2348899999999999886444444433333333 37899999776543 33455555 3
Q ss_pred CcEEEEEeCCccHHH---HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC
Q psy3143 190 SVEVALSVGGLEVKV---QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~---~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~ 266 (337)
+++|..++|...... +.+.-.+.++|.|++...+.+-+. .|.-..+.|+||||||.+ .+|..+-|.-+-.++
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~---AFkrkrWqyLvLDEaqnI--KnfksqrWQAllnfn 764 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT---AFKRKRWQYLVLDEAQNI--KNFKSQRWQALLNFN 764 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH---HHHhhccceeehhhhhhh--cchhHHHHHHHhccc
Confidence 688888888754322 222333567999999887776443 455678999999999987 455566565555566
Q ss_pred CCCeEEEEeecCchhHHHHHH
Q psy3143 267 RTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 267 ~~~q~i~~SAT~~~~~~~~~~ 287 (337)
..+++++....+.+.+.++..
T Consensus 765 sqrRLLLtgTPLqNslmELWS 785 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMELWS 785 (1958)
T ss_pred hhheeeecCCchhhHHHHHHH
Confidence 566666655557777666543
No 139
>KOG1123|consensus
Probab=98.87 E-value=1.6e-09 Score=99.27 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHHHhC-C--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 112 IYPTPIQAATIPVALL-G--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
..++|+|.+++..+.. | |.-+|..|.|+|||++-+-++.. + +.+||+++.+-.-+.|+...+..++..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i--------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I--------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e--------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 3578999999998874 3 47899999999999986554432 2 567999999999999999888887755
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-------CCCCCCCccEEEEecccccccccHHHHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-------PSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~~~~iViDEad~l~~~~~~~~~~~i 261 (337)
.+-.++.+..... .....++.|+|+|..++..--.+. ..+.-..+.++|+||+|.+...-|+..+.-+
T Consensus 372 ~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 5555555554322 223566789999987775321110 0112356889999999998877777766666
Q ss_pred HHHcCCCCeEEEEeecCchh
Q psy3143 262 IRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 262 ~~~~~~~~q~i~~SAT~~~~ 281 (337)
...+ .++++||+-.+
T Consensus 447 ~aHc-----KLGLTATLvRE 461 (776)
T KOG1123|consen 447 QAHC-----KLGLTATLVRE 461 (776)
T ss_pred HHHh-----hccceeEEeec
Confidence 5555 38899998755
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.87 E-value=4.6e-08 Score=97.66 Aligned_cols=62 Identities=26% Similarity=0.288 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHH---hCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 113 YPTPIQAATIPVA---LLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 113 ~p~~~Q~~~i~~~---~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.+++-|.+.+..+ +.+ +.++|.|+||+|||++|++|++..... .+.++||-+.|..|-.|+.
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-----~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-----EKKKLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-----cCCeEEEEcCCHHHHHHHH
Confidence 5688898865543 333 678899999999999999999876532 3567999999999999985
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.87 E-value=6.3e-08 Score=95.36 Aligned_cols=137 Identities=19% Similarity=0.186 Sum_probs=94.3
Q ss_pred EcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHH
Q psy3143 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVL 209 (337)
Q Consensus 134 ~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~ 209 (337)
.+.+|||||..|+-.+-..+. .|..+||++|...|+.|+...++.... +..+..++++.+..... ...
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 344699999999887766663 366799999999999999999987542 25677788877655433 333
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccc-c--c--HHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLD-E--H--FASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~-~--~--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
.+...|+|||- ...| .+.++.+||+||-|.-.. + + |.-.=..+++....+..+|+.|||.+-+..
T Consensus 238 ~G~~~IViGtR---------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 238 RGQARVVVGTR---------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred CCCCcEEEEcc---------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 45579999992 2222 488999999999996322 1 1 211212234444568899999999886655
Q ss_pred HHHH
Q psy3143 284 DLVS 287 (337)
Q Consensus 284 ~~~~ 287 (337)
..+.
T Consensus 309 ~~~~ 312 (665)
T PRK14873 309 ALVE 312 (665)
T ss_pred HHHh
Confidence 4443
No 142
>KOG1002|consensus
Probab=98.82 E-value=7.7e-08 Score=88.27 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHhCCC-----CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVALLGR-----DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~-----~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
+-|+|.+.+-++.... .-|+.-..|.|||...+..++.-+ .+...||++|+.+|. |+.+.+.....
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-------~ra~tLVvaP~VAlm-QW~nEI~~~T~- 255 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-------DRAPTLVVAPTVALM-QWKNEIERHTS- 255 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------ccCCeeEEccHHHHH-HHHHHHHHhcc-
Confidence 4688999887766443 457788999999988765555433 345599999998874 55555555544
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CC------C-----CCCCc--cEEEEeccccccccc-
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PS------F-----SLSDI--EVLVLDEADRMLDEH- 253 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~------~-----~l~~~--~~iViDEad~l~~~~- 253 (337)
-..++..++|......-.... ++|++.+|...+-...+.. .. . .|.++ --||+||||.+-+..
T Consensus 256 gslkv~~YhG~~R~~nikel~--~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 256 GSLKVYIYHGAKRDKNIKELM--NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred CceEEEEEecccccCCHHHhh--cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 357777788766544333322 3599999998887665532 11 1 14444 469999999876532
Q ss_pred -HHHHHHHHHHHcCCCCeEEEEeecC-chhHHHHHH
Q psy3143 254 -FASQMKEIIRLCSRTRQTMLFSATM-TDAVNDLVS 287 (337)
Q Consensus 254 -~~~~~~~i~~~~~~~~q~i~~SAT~-~~~~~~~~~ 287 (337)
-...+..+.. ..-+++|.|+ .+.+.++..
T Consensus 334 nTArAV~~L~t-----t~rw~LSGTPLQNrigElyS 364 (791)
T KOG1002|consen 334 NTARAVFALET-----TYRWCLSGTPLQNRIGELYS 364 (791)
T ss_pred cHHHHHHhhHh-----hhhhhccCCcchhhHHHHHH
Confidence 2233332221 1235567774 345555443
No 143
>KOG0389|consensus
Probab=98.73 E-value=7.7e-08 Score=92.73 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 114 PTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
+.++|.-.+.++. .+-+.|+.-..|-|||... ++.+..|.... ..+..|||||...|-. |++++.+++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g---~~gpHLVVvPsSTleN----WlrEf~kwC 471 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG---NPGPHLVVVPSSTLEN----WLREFAKWC 471 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC---CCCCcEEEecchhHHH----HHHHHHHhC
Confidence 5688988887753 3447799999999999774 33444443322 2456899999987744 555555554
Q ss_pred -CcEEEEEeCCccHHHHHHH-Hh---cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 190 -SVEVALSVGGLEVKVQESV-LR---KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 190 -~~~v~~~~~~~~~~~~~~~-~~---~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
.++|..++|....+...+. +. ..++|+|+|.......-..+..+.-.++.++|+||+|.|=+.. ..++..++..
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I 550 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI 550 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc
Confidence 5788888887654433222 21 2579999997654321111111224568999999999764443 3444544432
Q ss_pred cCCCCeEEEEeec-CchhHHHHHHh
Q psy3143 265 CSRTRQTMLFSAT-MTDAVNDLVSV 288 (337)
Q Consensus 265 ~~~~~q~i~~SAT-~~~~~~~~~~~ 288 (337)
+.+.+ |++|.| +.+++.+++..
T Consensus 551 -~An~R-lLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 551 -NANFR-LLLTGTPLQNNLKELISL 573 (941)
T ss_pred -cccce-EEeeCCcccccHHHHHHH
Confidence 33444 555665 56777777663
No 144
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.72 E-value=2.7e-07 Score=92.85 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=84.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH-Hh----h----ccCcEEEEEeCCc
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LA----Q----FTSVEVALSVGGL 200 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-l~----~----~~~~~v~~~~~~~ 200 (337)
++.+.++||+|||.+|+-.++..... .+-.+.||+||+.+.-..+.+.+.. .. . ...+.+..+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~----~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK----YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH----cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 78899999999999998877665421 1246799999999988877766551 11 1 1123333333221
Q ss_pred -------cHHHH-HHHHhc------CCCEEEECcHHHHHHHhcCCC----------CC---CCCc-cEEEEecccccccc
Q psy3143 201 -------EVKVQ-ESVLRK------CPDIVIATPGRLLDHLHNTPS----------FS---LSDI-EVLVLDEADRMLDE 252 (337)
Q Consensus 201 -------~~~~~-~~~~~~------~~~Ilv~Tp~~l~~~l~~~~~----------~~---l~~~-~~iViDEad~l~~~ 252 (337)
+.... ..+... ..+|+|+|-+.|..-...... .. +... -+||+||.|++-..
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 11111 122221 478999999988653211001 11 2222 38999999998542
Q ss_pred cHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 253 HFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 253 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
+ .....| ..+++.+ ++.+|||++.
T Consensus 217 ~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 N--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred h--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 2 122334 4455444 5669999987
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=1.9e-07 Score=92.13 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=97.6
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+|+++|.-.--.+..| -|....||-|||+++.+|++-..+ .|..|-|++.+.-||..=..++..+..++|
T Consensus 76 G~r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL------~GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 76 GKRPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL------TGKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CCCcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh------cCCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 346788887666554444 479999999999999998865443 356688889999999999999999999999
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
+.|++...+.........+ .+||.+||..-| .++|+.+ .......+.|.||||+|.++
T Consensus 148 LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 148 LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999988776655544444 469999999765 3344321 11225678899999999865
No 146
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.69 E-value=4.1e-07 Score=78.53 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcC---CCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYK---PRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+++.|.+|+..++.... .+|+||+|+|||....- ++..++.+ .....+.++|+++||...+..+...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47889999999999888 99999999999965433 33333111 1123577899999999999998888777
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.64 E-value=3.2e-07 Score=91.74 Aligned_cols=74 Identities=27% Similarity=0.301 Sum_probs=58.3
Q ss_pred HhCCCCCChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 107 GALNYIYPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 107 ~~~~~~~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
..+....|++.|.+.+..+ ..++.+++.||||+|||++|++|++..... .+.+++|.++|+.|-.|+.+..
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-----~~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-----EGKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-----cCCcEEEECCCHHHHHHHHHhh
Confidence 3445667899999988543 345569999999999999999999988642 2367999999999998887765
Q ss_pred HHH
Q psy3143 183 RQL 185 (337)
Q Consensus 183 ~~l 185 (337)
..+
T Consensus 84 ~~~ 86 (654)
T COG1199 84 LPI 86 (654)
T ss_pred cch
Confidence 543
No 148
>KOG0390|consensus
Probab=98.59 E-value=1.1e-06 Score=86.28 Aligned_cols=177 Identities=17% Similarity=0.124 Sum_probs=109.6
Q ss_pred ChHHHHHHHHHHhC---C-------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-CCeeEEEEcCCHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALL---G-------RDICGCAATGTGKTAAFMLPILERLLYKPRDD-QNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 114 p~~~Q~~~i~~~~~---~-------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~lil~Pt~~La~q~~~~~ 182 (337)
+.|+|.+.+.-+.. | ..+|+.-.+|+|||+..+..+...+-..+... .-.++|||+|. .|+..+.+.|
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF 317 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEF 317 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHH
Confidence 47999999876542 1 25778889999999987554444442222111 12679999997 6667777777
Q ss_pred HHHhhccCcEEEEEeCCccH--HHHHHHHh-----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEV--KVQESVLR-----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~--~~~~~~~~-----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
.++.....+....++|..+. ......+. -..-|++.+.+.+.++... +....++++|+||.|++=.. .
T Consensus 318 ~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 318 GKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch--h
Confidence 77665445666666666653 11111111 1125778888888766643 44678999999999986322 2
Q ss_pred HHHHHHHHHcCCCCeEEEEeecC-chhHHHHHH-hhCCCCeEEE
Q psy3143 256 SQMKEIIRLCSRTRQTMLFSATM-TDAVNDLVS-VSLTRPVRVF 297 (337)
Q Consensus 256 ~~~~~i~~~~~~~~q~i~~SAT~-~~~~~~~~~-~~~~~p~~i~ 297 (337)
..+...+..+.-.++ |++|.|+ .+++.+++. ..+-+|..+.
T Consensus 393 s~~~kaL~~l~t~rR-VLLSGTp~QNdl~EyFnlL~fvrP~~Lg 435 (776)
T KOG0390|consen 393 SLTLKALSSLKTPRR-VLLTGTPIQNDLKEYFNLLDFVRPGFLG 435 (776)
T ss_pred hHHHHHHHhcCCCce-EEeeCCcccccHHHHHHHHhhcChhhcc
Confidence 344445555554555 5567775 567777766 3344555544
No 149
>KOG0392|consensus
Probab=98.56 E-value=1.1e-06 Score=88.61 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHh---CCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCC---CCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 115 TPIQAATIPVAL---LGR-DICGCAATGTGKTAAFMLPILERLLYKPRD---DQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 115 ~~~Q~~~i~~~~---~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+.||+..+.++. .++ +-|+|-..|-|||+..+-.+..-.+.+... ....-.|||||.. |+--+...+.+++.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf~p 1055 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKFFP 1055 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHhcc
Confidence 678999988753 233 889999999999998754444444333111 1233389999984 44444455555555
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~ 267 (337)
+ +++..+.|+...+...+.-.++.+|+|++.+.+.+-+.. +.-..+.|+|+||-|.+=+. ...+....+.+..
T Consensus 1056 f--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1056 F--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA 1128 (1549)
T ss_pred h--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHhh
Confidence 4 677777777666555444445579999999887643321 11235789999999976432 3455566666666
Q ss_pred CCeEEEEeec-CchhHHHHHHh
Q psy3143 268 TRQTMLFSAT-MTDAVNDLVSV 288 (337)
Q Consensus 268 ~~q~i~~SAT-~~~~~~~~~~~ 288 (337)
+.++|+ |.| +.+++.++...
T Consensus 1129 ~hRLIL-SGTPIQNnvleLWSL 1149 (1549)
T KOG0392|consen 1129 NHRLIL-SGTPIQNNVLELWSL 1149 (1549)
T ss_pred cceEEe-eCCCcccCHHHHHHH
Confidence 666664 666 55666666543
No 150
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.55 E-value=1.1e-06 Score=90.47 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=93.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+..+|+--+|||||+.....+ +.+... ...+.+++|+-++.|-.|+...+..+........ ...+.......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 468999999999999864433 334333 3578899999999999999999999876543322 23333334444
Q ss_pred HhcC-CCEEEECcHHHHHHHhcCCC-CCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 209 LRKC-PDIVIATPGRLLDHLHNTPS-FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 209 ~~~~-~~Ilv~Tp~~l~~~l~~~~~-~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
+... -.|+|||-+.+-..+..... ..-.+=-+||+||||+-- ++..-..+...++ +...++||.|+-..
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~ 416 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFK 416 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCcccc
Confidence 5533 38999999999887755311 112233478899999843 2222233333333 47889999997543
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.55 E-value=1.5e-06 Score=85.48 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=96.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-.+|.+|+|||||.+..-++-+.+. .+..++|+|.-++.|+.++...+..-.- .++....-.++.. .-
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~------i~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYI------ID 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccc------cc
Confidence 4578999999999987666555441 2467899999999999999888875321 1222111111111 01
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHH-------HHHHcCCCCeEEEEeecCchhH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE-------IIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~-------i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+-+++..+.|.+.. .-.+.++++|||||+-..+.+-|.+.++. +...+.....+|++-|++.+..
T Consensus 119 ~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 112366777766666643 22367899999999998776644433332 3344566778999999999999
Q ss_pred HHHHHhhCCC
Q psy3143 283 NDLVSVSLTR 292 (337)
Q Consensus 283 ~~~~~~~~~~ 292 (337)
.+++..+..+
T Consensus 195 vdFl~~~Rp~ 204 (824)
T PF02399_consen 195 VDFLASCRPD 204 (824)
T ss_pred HHHHHHhCCC
Confidence 8888875443
No 152
>KOG4439|consensus
Probab=98.50 E-value=4.1e-07 Score=86.80 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcC----CCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+.+.|..++.++.-. ...|+....|-|||+..+..+++.-..+ ........+|||||- .|..|+...+..
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHHH
Confidence 468999999887632 3678899999999998766555543211 111112259999997 566777666666
Q ss_pred HhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHH----HHhcCCCC-CCC--CccEEEEecccccccc
Q psy3143 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLD----HLHNTPSF-SLS--DIEVLVLDEADRMLDE 252 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~----~l~~~~~~-~l~--~~~~iViDEad~l~~~ 252 (337)
.....-++|.+++|..........+ ..+||+|+|...+.. -+...+.. .|. .+..||+||||.+=+.
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 405 RLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 5556678899999876422222233 346999999876654 11111111 122 4678999999987544
No 153
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.48 E-value=1.1e-06 Score=74.00 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 114 PTPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
+++-|..++..++... -++++|+.|+|||.+. ..+...+.. .+.++++++||...+..+.+.. +.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-----~g~~v~~~apT~~Aa~~L~~~~-------~~ 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-----AGKRVIGLAPTNKAAKELREKT-------GI 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-----TT--EEEEESSHHHHHHHHHHH-------TS
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-----CCCeEEEECCcHHHHHHHHHhh-------Cc
Confidence 5788999999997544 4678899999999764 334444432 2578999999998877654431 11
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC---CCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC-
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT---PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR- 267 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~- 267 (337)
.. .|-..++...... ....+...++||||||-++. ...+..++...+.
T Consensus 69 ~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 EA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKS 120 (196)
T ss_dssp -E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-
T ss_pred ch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhc
Confidence 11 2222111111110 01115567899999999765 3455666666655
Q ss_pred CCeEEEEeec
Q psy3143 268 TRQTMLFSAT 277 (337)
Q Consensus 268 ~~q~i~~SAT 277 (337)
..++|++.=+
T Consensus 121 ~~klilvGD~ 130 (196)
T PF13604_consen 121 GAKLILVGDP 130 (196)
T ss_dssp T-EEEEEE-T
T ss_pred CCEEEEECCc
Confidence 6777777654
No 154
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.48 E-value=2.7e-06 Score=83.03 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
..+|+.|+..++.++-+++.|++|+|||....- ++..+........+.++++++||.-.|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 378999999999999999999999999986432 22222211111113679999999988887766655432211110
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCC-----CCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP-----SFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
. .......+-..|-.+|+....... .-+...+++||||||-++. ...+..+++.++...
T Consensus 224 --------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 000001122334333333211100 1123357999999998654 346667788888888
Q ss_pred eEEEEe
Q psy3143 270 QTMLFS 275 (337)
Q Consensus 270 q~i~~S 275 (337)
++|++.
T Consensus 288 rlIlvG 293 (586)
T TIGR01447 288 KLILLG 293 (586)
T ss_pred EEEEEC
Confidence 988876
No 155
>KOG0384|consensus
Probab=98.47 E-value=9.4e-07 Score=89.07 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHh---HHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 112 IYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAF---MLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~---~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
..+..+|...+.+++ .+.++|+.-..|-|||..- +-.+++.. + ..+-.|||+|...+... -+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~----~--~~gpflvvvplst~~~W----~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL----Q--IHGPFLVVVPLSTITAW----ERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh----h--ccCCeEEEeehhhhHHH----HHH
Confidence 677899999887765 5679999999999999763 33333332 1 13347888898766543 333
Q ss_pred HhhccCcEEEEEeCCccHHHHHHHHh----c-----CCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 185 LAQFTSVEVALSVGGLEVKVQESVLR----K-----CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~~~~~~~~~----~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
+...+..++.+++|....+...+.+. . .++++++|.+.++.--. .+.--.+.++++||||+|-+..
T Consensus 439 f~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN~~-- 513 (1373)
T KOG0384|consen 439 FETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKNDE-- 513 (1373)
T ss_pred HHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCchH--
Confidence 33334688888888876554433221 2 37899999888765221 1222346899999999986443
Q ss_pred HHHHHHHHHcCCCCeEEEEeecCchhHHHHHHh-hCCCCeEEE
Q psy3143 256 SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV-SLTRPVRVF 297 (337)
Q Consensus 256 ~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~-~~~~p~~i~ 297 (337)
..+...+..+.-+.+++++...+.+.+.+|..+ .+-.|..+.
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~ 556 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFD 556 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCC
Confidence 334444555666667676666677888888753 233344433
No 156
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.44 E-value=4.1e-07 Score=76.43 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHH---HHH-HHhh
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ---VTR-QLAQ 187 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~---~~~-~l~~ 187 (337)
...+..|..++.+++...-+++.||.|||||+.++..+++.+.. +.-.+++|+-|..+....+-- .+. ++..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----TS-SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----CCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 34588999999999988889999999999999999999988854 224578888887654222100 000 0000
Q ss_pred ccC---cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 188 FTS---VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 188 ~~~---~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
+.. -....+++..... ..+ ....|-+..+. +++ ...+.+ .+||+|||+.+. ..++..++..
T Consensus 79 ~~~p~~d~l~~~~~~~~~~---~~~-~~~~Ie~~~~~----~iR---Grt~~~-~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 79 YLRPIYDALEELFGKEKLE---ELI-QNGKIEIEPLA----FIR---GRTFDN-AFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTHHHHHHHTTTS-TTCHH---HHH-HTTSEEEEEGG----GGT---T--B-S-EEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhChHhHH---HHh-hcCeEEEEehh----hhc---Cccccc-eEEEEecccCCC----HHHHHHHHcc
Confidence 000 0000000111111 111 22256666543 221 122332 899999999764 5677778888
Q ss_pred cCCCCeEEEEeec
Q psy3143 265 CSRTRQTMLFSAT 277 (337)
Q Consensus 265 ~~~~~q~i~~SAT 277 (337)
+..+++++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888999887654
No 157
>PRK10536 hypothetical protein; Provisional
Probab=98.43 E-value=8.3e-06 Score=70.56 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH-----------HHH
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL-----------GVQ 177 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L-----------a~q 177 (337)
.++..-+..|...+..+..+..+++.|++|+|||+......++.++.. .-.+++|.=|+.+. .+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~----~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK----DVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 455667899999999998888889999999999999888777766431 13456666676532 222
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
+..++..+...+.. +.+... ....+. ..-.|-|.... +++. ..|. -.+||+|||+.+. ..
T Consensus 131 ~~p~~~pi~D~L~~----~~~~~~---~~~~~~~~~~~Iei~~l~----ymRG---rtl~-~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 131 FAPYFRPVYDVLVR----RLGASF---MQYCLRPEIGKVEIAPFA----YMRG---RTFE-NAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHH----HhChHH---HHHHHHhccCcEEEecHH----HhcC---Cccc-CCEEEEechhcCC----HH
Confidence 22222222211111 011111 111111 11245555432 3322 1233 3799999999765 46
Q ss_pred HHHHHHHHcCCCCeEEEEee
Q psy3143 257 QMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SA 276 (337)
++..++..+..++++|+..-
T Consensus 192 ~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHhhcCCCCEEEEeCC
Confidence 78888888888888887654
No 158
>KOG1000|consensus
Probab=98.40 E-value=5.1e-06 Score=76.63 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred ChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 114 PTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 114 p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
+.|+|...+...+ .|..+++.-.+|-|||..++.-+.-.. . ..-.||+||..-. ..+.+.+..+.... ..
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyr--a-----EwplliVcPAsvr-ftWa~al~r~lps~-~p 269 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYR--A-----EWPLLIVCPASVR-FTWAKALNRFLPSI-HP 269 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHh--h-----cCcEEEEecHHHh-HHHHHHHHHhcccc-cc
Confidence 4799999887665 567899999999999998754332222 1 2238999997543 33344444443222 22
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
+.++.++...... +-....|.|.+.+.|..+- . .+.-..+.++|+||.|.+-+.. ...++.+...+....++|
T Consensus 270 i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~-~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLH-D--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVI 342 (689)
T ss_pred eEEEecccCCccc---cccCCeEEEEEHHHHHHHH-H--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheE
Confidence 4444444321110 1122368888888776533 2 2334458999999999764433 445666666666667899
Q ss_pred EEeecCc
Q psy3143 273 LFSATMT 279 (337)
Q Consensus 273 ~~SAT~~ 279 (337)
++|.|..
T Consensus 343 LLSGTPa 349 (689)
T KOG1000|consen 343 LLSGTPA 349 (689)
T ss_pred EecCCcc
Confidence 9999964
No 159
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.37 E-value=4.8e-06 Score=81.54 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
.++|+.|+-..+.++-++|.|++|+|||....- ++..+... ......++++++||...|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~-~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQL-ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 589999999999999999999999999987432 22222211 11124579999999999888877665433222110
Q ss_pred EEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCC-----CCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCC
Q psy3143 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP-----SFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269 (337)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~ 269 (337)
. ........-..|-.+|+....... .-+.-.+++||||||-++- ...+..+++.++..+
T Consensus 230 ---~---------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 ---D---------EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred ---h---------hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 0 000000111233333332211110 1123356899999998653 456677888888889
Q ss_pred eEEEEee
Q psy3143 270 QTMLFSA 276 (337)
Q Consensus 270 q~i~~SA 276 (337)
++|++.=
T Consensus 294 rlIlvGD 300 (615)
T PRK10875 294 RVIFLGD 300 (615)
T ss_pred EEEEecc
Confidence 9888763
No 160
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=1.3e-06 Score=87.58 Aligned_cols=127 Identities=23% Similarity=0.267 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v 193 (337)
|+++| .+-.+...+.-|..+.||-|||+++.+|++-..+ .|..|=||+.+--||..=..++..+..++|+.|
T Consensus 139 ~ydVQ--LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL------~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtV 210 (1025)
T PRK12900 139 PYDVQ--LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNAL------TGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSV 210 (1025)
T ss_pred ccchH--HhhhHHhhcCCccccCCCCCcchHhHHHHHHHHH------cCCCcEEEeechHhhhhhHHHHHHHHHHhCCee
Confidence 45555 5555555666788999999999999999866654 345577888888999999999999999999999
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHH-----HHHHhcCC-CCCCCCccEEEEecccccc
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRL-----LDHLHNTP-SFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~~~-~~~l~~~~~iViDEad~l~ 250 (337)
+++..+....... -...+||.+||..-+ .+.+...+ ......+.|.||||+|.++
T Consensus 211 g~i~~~~~~~~Rr--~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 211 GVILNTMRPEERR--EQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eeeCCCCCHHHHH--HhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 9987665554433 345569999998644 33332211 1235678899999999865
No 161
>COG4889 Predicted helicase [General function prediction only]
Probab=98.28 E-value=4e-06 Score=82.16 Aligned_cols=140 Identities=23% Similarity=0.166 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhCCC----CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 101 PLLKAIGALNYIYPTPIQAATIPVALLGR----DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 101 ~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~----~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
++..++.-..-..|+|+|+.|+..++.|= .-=+.+.+|+|||+..+- +.+.+- ..++|+++|+..|..
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala-------~~~iL~LvPSIsLLs 220 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA-------AARILFLVPSISLLS 220 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh-------hhheEeecchHHHHH
Confidence 44455555567789999999999988652 122345679999998754 444442 468999999999998
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHH--------------------H-----HHHHhcCCCEEEECcHHHHHHHhcCC
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKV--------------------Q-----ESVLRKCPDIVIATPGRLLDHLHNTP 231 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~--------------------~-----~~~~~~~~~Ilv~Tp~~l~~~l~~~~ 231 (337)
|..+....- +...++...++....... . ......+--|+++|.+.+...-...
T Consensus 221 QTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ- 298 (1518)
T COG4889 221 QTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ- 298 (1518)
T ss_pred HHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-
Confidence 865544321 112333333322211100 0 0011123468899988776544322
Q ss_pred CCCCCCccEEEEecccccc
Q psy3143 232 SFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 232 ~~~l~~~~~iViDEad~l~ 250 (337)
..-+..+++||.||||+-.
T Consensus 299 e~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HcCCCCccEEEecchhccc
Confidence 2237789999999999854
No 162
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.26 E-value=5.8e-06 Score=76.30 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=67.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-++|.|.+|||||+..+-.+... .....+.++++++++..|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l----~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL----QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh----hccccCCceEEEEecchHHHHHHHHHhhhccc---------------------
Confidence 46899999999998865443333 11124667999999999988877766653300
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-------HHHHHHHHHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-------FASQMKEIIRL 264 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-------~~~~~~~i~~~ 264 (337)
......+..|..+...+.. .......+++|||||||+|...+ ...++..+++.
T Consensus 58 -~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0002233344444333321 12346789999999999998731 24566666665
No 163
>PF13245 AAA_19: Part of AAA domain
Probab=98.23 E-value=6.6e-06 Score=57.86 Aligned_cols=60 Identities=33% Similarity=0.373 Sum_probs=40.8
Q ss_pred HHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 121 TIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 121 ~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
++...+.+. -++|.||+|||||...+-.+...+. ..... +.++++++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~-~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLA-ARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHH-HhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344334444 4556999999999776554444442 11222 668999999999999888777
No 164
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=3.5e-06 Score=84.74 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
.++-.+.+-.+...+.-|..+.||-|||+++.+|++-..+ .|..|-||+.+--||..=..++..+..++|+.|+
T Consensus 169 ~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL------~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNAL------TGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred cccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHH------cCCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 3444446666666677889999999999999999876665 3455778888889999999999999999999999
Q ss_pred EEeC-CccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 195 LSVG-GLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
++.. +.... .+.-...+||.+||..-+ .++|+.+ .......+.|.||||+|.+|
T Consensus 243 ~i~~~~~~~~--~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 243 CIDKHQPNSE--ARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ecCCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 8765 32333 333345579999998654 2333221 12235678999999999865
No 165
>KOG1802|consensus
Probab=98.19 E-value=1.2e-05 Score=76.57 Aligned_cols=77 Identities=17% Similarity=0.036 Sum_probs=62.2
Q ss_pred HHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 105 AIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 105 ~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.+...++..+..-|..|+.+++...-.||.||+|+|||....--+++.+-. ..+.+|+++|+...+.|+...+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----cCCceEEEcccchhHHHHHHHHHh
Confidence 445567778899999999999999999999999999998876655555421 366799999999999998877765
Q ss_pred Hh
Q psy3143 185 LA 186 (337)
Q Consensus 185 l~ 186 (337)
.+
T Consensus 477 tg 478 (935)
T KOG1802|consen 477 TG 478 (935)
T ss_pred cC
Confidence 43
No 166
>KOG0388|consensus
Probab=98.18 E-value=4.6e-06 Score=79.90 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 114 PTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
+..+|.+.+.++. .|-+-|+.-..|-|||...+..+.+..-...- -+-.|||+|...|- +|...+++++
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nI---wGPFLVVtpaStL~----NWaqEisrFl 640 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNI---WGPFLVVTPASTLH----NWAQEISRFL 640 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccC---CCceEEeehHHHHh----HHHHHHHHhC
Confidence 3578888888765 46689999999999998875544443322221 23378888976663 4455555554
Q ss_pred -CcEEEEEeCCccHHHHHHH---------HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHH
Q psy3143 190 -SVEVALSVGGLEVKVQESV---------LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259 (337)
Q Consensus 190 -~~~v~~~~~~~~~~~~~~~---------~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~ 259 (337)
.+++..++|+.+.....+. ...+++|+|+|.+.++.--. .+.--.+.|+|+|||+.+-... .....
T Consensus 641 P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek---y~qkvKWQYMILDEAQAIKSSs-S~RWK 716 (1185)
T KOG0388|consen 641 PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK---YLQKVKWQYMILDEAQAIKSSS-SSRWK 716 (1185)
T ss_pred ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH---HHHhhhhhheehhHHHHhhhhh-hhHHH
Confidence 6889999998875544332 12457999999876543111 1112346899999999864333 34455
Q ss_pred HHHHHcCCCCeEEEEeecCc-hhHHHH
Q psy3143 260 EIIRLCSRTRQTMLFSATMT-DAVNDL 285 (337)
Q Consensus 260 ~i~~~~~~~~q~i~~SAT~~-~~~~~~ 285 (337)
.++...- +.-++++.|.- +.+.++
T Consensus 717 tLLsF~c--RNRLLLTGTPIQNsMqEL 741 (1185)
T KOG0388|consen 717 TLLSFKC--RNRLLLTGTPIQNSMQEL 741 (1185)
T ss_pred HHhhhhc--cceeeecCCccchHHHHH
Confidence 5554432 22366677754 444444
No 167
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.18 E-value=3.3e-05 Score=77.54 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..+++.|..|+..+..++-+++.|++|+|||.... .++..+... +...++++++||...|..+.+. ++.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~---~~~~~v~l~ApTg~AA~~L~e~-------~g~ 390 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEEL---GGLLPVGLAAPTGRAAKRLGEV-------TGL 390 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHc---CCCceEEEEeCchHHHHHHHHh-------cCC
Confidence 46899999999999988999999999999998642 233333211 1125688899998887654322 111
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.... ..+.+...++ ..... . .-.....++||||||+++. ...+..+++.++...++
T Consensus 391 ~a~T---------ih~lL~~~~~-------~~~~~--~--~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rl 446 (720)
T TIGR01448 391 TAST---------IHRLLGYGPD-------TFRHN--H--LEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARL 446 (720)
T ss_pred cccc---------HHHHhhccCC-------ccchh--h--hhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEE
Confidence 1100 1111111100 00000 0 0012457899999999764 23456667778888888
Q ss_pred EEEee
Q psy3143 272 MLFSA 276 (337)
Q Consensus 272 i~~SA 276 (337)
|++.=
T Consensus 447 ilvGD 451 (720)
T TIGR01448 447 LLVGD 451 (720)
T ss_pred EEECc
Confidence 88753
No 168
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.16 E-value=5.4e-05 Score=66.74 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=110.2
Q ss_pred cCCCCHHHHHHHHhCCCCCChHHHHHHHHHHh----------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 95 QMNLSRPLLKAIGALNYIYPTPIQAATIPVAL----------LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 95 ~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
.+.|+..++.. | .++..|.+++-.+. .+.-+++--.||.||.....--+++.++. .+.|
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-----Gr~r 93 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-----GRKR 93 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-----CCCc
Confidence 34566554432 2 34788888876554 23467888899999998877667777652 2447
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC--CC-------
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF--SL------- 235 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~l------- 235 (337)
+|++..+..|-....+.++.++.. .+.+..+..-.. .....-.-.|+++|...|.......+.. .+
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 999999999999999999988744 333332221100 0001112369999998888765321111 11
Q ss_pred --CCccEEEEeccccccccc--------HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 236 --SDIEVLVLDEADRMLDEH--------FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 236 --~~~~~iViDEad~l~~~~--------~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
..=.+||+||||.+-+.. ....+..+...++.. +++-+|||-..+..++.
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep~Nma 228 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEPRNMA 228 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCCceee
Confidence 112489999999875432 234555566777644 58999999887766653
No 169
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.16 E-value=3.3e-05 Score=76.42 Aligned_cols=66 Identities=21% Similarity=0.153 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.+++.|..|+..++.. ..++|.||+|+|||....-.+.+.+. .+.++|+++||...+.++...+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999998876 57789999999999776544444442 245899999999999988887765
No 170
>KOG1803|consensus
Probab=98.09 E-value=2.6e-05 Score=73.93 Aligned_cols=65 Identities=25% Similarity=0.261 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
.+.+-|.+|+..+.+.++ .+++||+|+|||.....-+.+.+. .+.++|+..||...+..+...+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------cCCeEEEEcCchHHHHHHHHHhc
Confidence 357889999999888864 578999999999987766666653 35789999999999888877544
No 171
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=0.00029 Score=65.36 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+.+++.||||+|||+...-.+......... .+.++.++. +.|.-+..+ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~--~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~----------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD--KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA----------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc--CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-----------
Confidence 467899999999998865433332221111 233444433 444444432 44444444444322
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCC-CeEEEEeecCch-hHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRT-RQTMLFSATMTD-AVN 283 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~-~q~i~~SAT~~~-~~~ 283 (337)
+.++..+...+.. +..+++||||++.++.... ....+..++...... ..++++|||... ++.
T Consensus 239 ----------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 ----------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1234445544433 4568999999999876432 234555555555433 456888999874 466
Q ss_pred HHHHhh
Q psy3143 284 DLVSVS 289 (337)
Q Consensus 284 ~~~~~~ 289 (337)
+.+..|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 666666
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.03 E-value=2.3e-05 Score=76.77 Aligned_cols=145 Identities=18% Similarity=0.305 Sum_probs=81.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc------CcEEEEEeCCccHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT------SVEVALSVGGLEVK 203 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~------~~~v~~~~~~~~~~ 203 (337)
++=|.+.||+|||.+|+-.|++.- +..+-.+-||+|||.+.-.-++...+.+.... +.+.-.+.-.....
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLh----k~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~ 151 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELH----KKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE 151 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHH----HHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH
Confidence 677899999999999976554431 11235679999999987666544444332221 23333332222222
Q ss_pred HHHHHHhcCCCEEEECcHHHHHH------Hh-----cCCCC--------CCCCc-cEEEEecccccccc-cHHHHHHHHH
Q psy3143 204 VQESVLRKCPDIVIATPGRLLDH------LH-----NTPSF--------SLSDI-EVLVLDEADRMLDE-HFASQMKEII 262 (337)
Q Consensus 204 ~~~~~~~~~~~Ilv~Tp~~l~~~------l~-----~~~~~--------~l~~~-~~iViDEad~l~~~-~~~~~~~~i~ 262 (337)
.........+.|++.|....-.- +. ..+.+ .+..+ -++|+||=|+|... .+...+..+
T Consensus 152 ~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~l- 230 (985)
T COG3587 152 KFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQL- 230 (985)
T ss_pred HHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHhh-
Confidence 22333345678888876554322 11 11100 02222 28999999999874 222333322
Q ss_pred HHcCCCCeEEEEeecCchhHH
Q psy3143 263 RLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 263 ~~~~~~~q~i~~SAT~~~~~~ 283 (337)
. +.-++=||||+++...
T Consensus 231 ---~-pl~ilRfgATfkd~y~ 247 (985)
T COG3587 231 ---N-PLLILRFGATFKDEYN 247 (985)
T ss_pred ---C-ceEEEEecccchhhhc
Confidence 1 2235678999998866
No 173
>KOG0952|consensus
Probab=97.95 E-value=7.5e-06 Score=81.65 Aligned_cols=132 Identities=23% Similarity=0.299 Sum_probs=93.9
Q ss_pred CChHHHHHHHHHHhC-CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 113 YPTPIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
...|+|.+.+....+ ..++++-+|||+|||.+|-+.+...+.. .++.++++++|-.+|+..-...........++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~----~p~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY----YPGSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc----CCCccEEEEcCCchhhcccccchhhhcccCCc
Confidence 344566555543322 3478889999999999999988877643 34678999999999988766655554444478
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEeccccccc
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~ 251 (337)
++.-+.|....... .. ..++|+|+||.+.-...+++... .+.+++.+|+||.|++..
T Consensus 1003 k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1003 KVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred eeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 88777776654421 12 33599999999887776644332 378999999999998654
No 174
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.94 E-value=8.5e-06 Score=63.75 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=14.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++.++++|++|+|||......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 35678999999999998764433
No 175
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=4.6e-05 Score=76.74 Aligned_cols=74 Identities=23% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCCChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|..++|.|.+.+..+ ..++++++.+|||+|||++.+.|++.+....+ ...+++|.+.|..-..|+.+.++.+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---ccccEEEEcccchHHHHHHHHHHhh
Confidence 4555688998887654 46789999999999999999999998864322 2468999999999999999999986
Q ss_pred h
Q psy3143 186 A 186 (337)
Q Consensus 186 ~ 186 (337)
.
T Consensus 84 ~ 84 (705)
T TIGR00604 84 M 84 (705)
T ss_pred h
Confidence 4
No 176
>PRK08181 transposase; Validated
Probab=97.92 E-value=0.00037 Score=61.53 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=60.7
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
+-.+++++++||+|+|||........+.+ . .+.+++++ +..+|..++.....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~-----~g~~v~f~-~~~~L~~~l~~a~~--------------------- 154 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALI-E-----NGWRVLFT-RTTDLVQKLQVARR--------------------- 154 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHH-H-----cCCceeee-eHHHHHHHHHHHHh---------------------
Confidence 44678999999999999976544333333 1 23445555 34455444321100
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
+ .+...++.. +.++++|||||.+...... ....+..++........+|+.|-..+..+.
T Consensus 155 ---------~---~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 155 ---------E---LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWN 214 (269)
T ss_pred ---------C---CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH
Confidence 0 122222221 3457899999999764433 334555555544334566666655555444
Q ss_pred H
Q psy3143 284 D 284 (337)
Q Consensus 284 ~ 284 (337)
.
T Consensus 215 ~ 215 (269)
T PRK08181 215 R 215 (269)
T ss_pred H
Confidence 3
No 177
>KOG0921|consensus
Probab=97.89 E-value=8.3e-05 Score=73.32 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=95.9
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH-HHhhccCcEEEEEeCCcc
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR-QLAQFTSVEVALSVGGLE 201 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~-~l~~~~~~~v~~~~~~~~ 201 (337)
..+...+-+++-+.||+|||..+...+++.++.+.... -..+.+..|+|-.+..+.+.+. .-+...+-.++. +
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~-~~na~v~qprrisaisiaerva~er~e~~g~tvgy-----~ 461 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA-SFNAVVSQPRRISAISLAERVANERGEEVGETCGY-----N 461 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc-cccceeccccccchHHHHHHHHHhhHHhhcccccc-----c
Confidence 34445566789999999999999999999987655432 3457888899988887765443 333222222222 1
Q ss_pred HHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 202 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+.........--|++||-+-+++.+.+. +.-+.++|+||.|..--. .|...+.+=+....+...+++||||+..
T Consensus 462 vRf~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 462 VRFDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred ccccccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 11111111222269999999999988763 667889999999964333 2444444333344556667777777765
Q ss_pred h
Q psy3143 281 A 281 (337)
Q Consensus 281 ~ 281 (337)
+
T Consensus 538 d 538 (1282)
T KOG0921|consen 538 D 538 (1282)
T ss_pred h
Confidence 4
No 178
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.88 E-value=5.3e-05 Score=68.47 Aligned_cols=70 Identities=24% Similarity=0.184 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+|+-|.+++.. ..++++|.|..|||||.+.+.-++..+.... ....++|++++|+..|..+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 36789999887 6789999999999999987666665554332 3467899999999999999988888653
No 179
>KOG0386|consensus
Probab=97.87 E-value=3.7e-05 Score=76.49 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=80.3
Q ss_pred CCCCChHHHHHHHHHHhC---C-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVALL---G-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~---~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
....+.+||...+.++.+ + -+-|+.-.+|-|||.+-+. ++..++...+. .+--||+||+-.|.....+ +..+
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~--~GP~LvivPlstL~NW~~E-f~kW 466 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQM--QGPFLIIVPLSTLVNWSSE-FPKW 466 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHccc--CCCeEEeccccccCCchhh-cccc
Confidence 445678999999988652 3 3788999999999987533 33333322221 2337889999988765433 2222
Q ss_pred hhccCcEEEEEeCCccH---HHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 186 AQFTSVEVALSVGGLEV---KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 186 ~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
+. .+... .+.|... ..+.+.....++|+++|.+.+.. ....+.--++.|+||||.|+|-.
T Consensus 467 aP--Sv~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 467 AP--SVQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cc--ceeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc
Confidence 21 23333 3333322 22234445678999999776554 11112233567999999999854
No 180
>KOG4150|consensus
Probab=97.86 E-value=0.0001 Score=69.44 Aligned_cols=204 Identities=10% Similarity=-0.084 Sum_probs=131.6
Q ss_pred HHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 106 IGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 106 l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
+..+.......+|..++..+..|+++++...|.+||.++|.+.....++.-+ ....+++.|+.+++....+.+.-.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH----ATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc----ccceecchhHHHHhhccCCceEEE
Confidence 4455666678999999999999999999999999999999888777665333 334788999999877654332211
Q ss_pred hh---ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CC--CCCCCccEEEEecccccccc---cHHH
Q psy3143 186 AQ---FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PS--FSLSDIEVLVLDEADRMLDE---HFAS 256 (337)
Q Consensus 186 ~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~--~~l~~~~~iViDEad~l~~~---~~~~ 256 (337)
.. ...-.++-.+.+..........+.+.+++++.|......+.-. .. ..+-...++++||+|.++.. ....
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 11 1111233334454555555666777899999998876644321 11 11334678999999976532 2445
Q ss_pred HHHHHHHHc-----CCCCeEEEEeecCchhHHHHHHhhC-CCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 257 QMKEIIRLC-----SRTRQTMLFSATMTDAVNDLVSVSL-TRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 257 ~~~~i~~~~-----~~~~q~i~~SAT~~~~~~~~~~~~~-~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
+++++.+.+ +.+.|++-.|||+.+.++-....+- ..-..|..+ ..+.+-+++.++=.
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP 497 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNP 497 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCC
Confidence 566665544 5678999999999988766554433 333444433 33444455555543
No 181
>PRK06526 transposase; Provisional
Probab=97.85 E-value=0.00024 Score=62.29 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHHHH----------HHhhCCCCeEEEeCCC
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDL----------VSVSLTRPVRVFVDNN 301 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~----------~~~~~~~p~~i~~~~~ 301 (337)
+..+++|||||++.+.... ....+..++........+|+.|...+...... +...+.+...|.+...
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCC
Confidence 3457899999999764322 23344455443322345777777665554332 3444555666665543
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.83 E-value=0.00019 Score=61.07 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh-hcc
Q psy3143 114 PTPIQAATIPVALL---GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA-QFT 189 (337)
Q Consensus 114 p~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~-~~~ 189 (337)
.++.|.+....+.+ |++.+....+|.|||.+ ++|++..++... ..-+.+++| ++|..|....+.... .-.
T Consensus 24 iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg----~~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 24 IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG----SRLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC----CcEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 57889998888775 57999999999999987 577777776432 235666666 479999988888644 333
Q ss_pred CcEEEEE--eCCccHH-----HHHH---HHhcCCCEEEECcHHHHHHH
Q psy3143 190 SVEVALS--VGGLEVK-----VQES---VLRKCPDIVIATPGRLLDHL 227 (337)
Q Consensus 190 ~~~v~~~--~~~~~~~-----~~~~---~~~~~~~Ilv~Tp~~l~~~l 227 (337)
+-++..+ ....... .... .....-.|+++||+.++.+.
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 4444333 2222211 1111 11223479999999887643
No 183
>KOG1015|consensus
Probab=97.79 E-value=0.00064 Score=67.71 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHhC---CCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 97 NLSRPLLKAIGAL---NYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 97 ~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.++..++..|+-. |+..++..-.+.+.... .|-.+|+.--.|-|||+..+.. ++.++.... -.-.++|||+|-
T Consensus 660 qV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtf-lhTvL~c~k-lg~ktaLvV~Pl 737 (1567)
T KOG1015|consen 660 QVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTF-LHTVLLCDK-LGFKTALVVCPL 737 (1567)
T ss_pred hccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHH-HHHHHHhhc-cCCceEEEEcch
Confidence 3555566555432 44444444444444432 1346777778999999986544 444432222 235689999998
Q ss_pred HHHHHHHHHHHHHHhhc----cCcEEEEEeCCccHH---HHHHHHhcCCCEEEECcHHHHHHHhcCCCCC----------
Q psy3143 172 RELGVQVYQVTRQLAQF----TSVEVALSVGGLEVK---VQESVLRKCPDIVIATPGRLLDHLHNTPSFS---------- 234 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~~---~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~---------- 234 (337)
..+.+ +++.|.++... -.+.|..+..-.... .....|...-.|.|.-...+..+....+.-.
T Consensus 738 Nt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~ 816 (1567)
T KOG1015|consen 738 NTALN-WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKA 816 (1567)
T ss_pred HHHHH-HHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHh
Confidence 66544 44555555442 134444332222211 1122333333566655555554433221111
Q ss_pred --CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHH
Q psy3143 235 --LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDL 285 (337)
Q Consensus 235 --l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~ 285 (337)
-..-++||+||+|.+-... ..+...+..+...+++++....|.+++.+.
T Consensus 817 lvdpGPD~vVCDE~HiLKNek--sa~Skam~~irtkRRI~LTGTPLQNNLmEY 867 (1567)
T KOG1015|consen 817 LVDPGPDFVVCDEGHILKNEK--SAVSKAMNSIRTKRRIILTGTPLQNNLMEY 867 (1567)
T ss_pred ccCCCCCeEEecchhhhccch--HHHHHHHHHHHhheeEEeecCchhhhhHHH
Confidence 1235799999999764432 222222222333455555444456665554
No 184
>KOG0989|consensus
Probab=97.78 E-value=0.00021 Score=62.74 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc---hhHHHHHHhhCC
Q psy3143 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT---DAVNDLVSVSLT 291 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~---~~~~~~~~~~~~ 291 (337)
.....++.||+||||.|...-| ..+.+.+...+...++++....+. ..+..-+.+|.-
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred CCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 3466789999999999876654 566667777777778887776654 334444444443
No 185
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00015 Score=74.93 Aligned_cols=169 Identities=20% Similarity=0.149 Sum_probs=100.7
Q ss_pred CCChHHHHHHHHHHh-----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 112 IYPTPIQAATIPVAL-----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
..+.++|...+.++. .+.+.+++...|.|||+..+..+.+.+. ... ...+.++|++|+..+ .++...+.++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~-~~~-~~~~~~liv~p~s~~-~nw~~e~~k~~ 413 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLE-SIK-VYLGPALIVVPASLL-SNWKREFEKFA 413 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhh-ccc-CCCCCeEEEecHHHH-HHHHHHHhhhC
Confidence 445778888887754 2567888899999999987666555221 111 114679999998554 44555555555
Q ss_pred hccCcEEEEEeCCcc-----HHHHHHHHhcC----CCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH
Q psy3143 187 QFTSVEVALSVGGLE-----VKVQESVLRKC----PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~----~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~ 257 (337)
..... +...+|... ........... .+++++|.+.+.........+.-..+.++|+||||.+-... ...
T Consensus 414 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~ 491 (866)
T COG0553 414 PDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSE 491 (866)
T ss_pred ccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHH
Confidence 43332 556666554 22222233322 68999999988884322223445568899999999954332 122
Q ss_pred HHHHHHHcCCCCeEEEEeecC-chhHHHHHH
Q psy3143 258 MKEIIRLCSRTRQTMLFSATM-TDAVNDLVS 287 (337)
Q Consensus 258 ~~~i~~~~~~~~q~i~~SAT~-~~~~~~~~~ 287 (337)
-..+. .++...+ +++|.|+ .+.+.++..
T Consensus 492 ~~~l~-~~~~~~~-~~LtgTPlen~l~eL~s 520 (866)
T COG0553 492 GKALQ-FLKALNR-LDLTGTPLENRLGELWS 520 (866)
T ss_pred HHHHH-HHhhcce-eeCCCChHhhhHHHHHH
Confidence 22222 3333333 6677776 455555544
No 186
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00017 Score=71.59 Aligned_cols=127 Identities=21% Similarity=0.236 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v 193 (337)
|+.+| .+-.+.....-++-..||-|||++..+|+.-..+ .+..+.+++..--||..-..++..+..+.++.+
T Consensus 81 ~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 44455 5555666677888999999999999999866554 355688888999999999999999999999999
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
++...+.........+. +||.++|-..| .+++.-+ .......+.|.|+||+|.++
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99998887665555544 59999998655 2222211 11125568899999999765
No 187
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.70 E-value=0.00046 Score=62.07 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=84.0
Q ss_pred CCCCCChHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 109 LNYIYPTPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|+..-...|..|+.+++... =|.+.|..|||||+.++.+.++..+.+.. -.++|+.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---y~KiiVtRp~vpvG~dI-------- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---YRKIIVTRPTVPVGEDI-------- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---hceEEEecCCcCccccc--------
Confidence 477777889999999988664 35688999999999998888887764442 33577777876553221
Q ss_pred hccCcEEEEEeCCccHH--HHHHHHhcC----CCEEEECcHHHHHHHhcCCCCC---CC-----C--ccEEEEecccccc
Q psy3143 187 QFTSVEVALSVGGLEVK--VQESVLRKC----PDIVIATPGRLLDHLHNTPSFS---LS-----D--IEVLVLDEADRML 250 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~--~~~~~~~~~----~~Ilv~Tp~~l~~~l~~~~~~~---l~-----~--~~~iViDEad~l~ 250 (337)
+.+-|....+ .+.+.+..+ ...==|+.+.|...+.+ +.+. +. + =.|||||||+.+-
T Consensus 293 -------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 293 -------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred -------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC
Confidence 1111111100 000000000 00001122222222221 1111 11 1 1599999999875
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
.+.+.-|+..+....+++++.
T Consensus 365 ----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----HHHHHHHHHhccCCCEEEEcC
Confidence 678888999998888888765
No 188
>PRK14974 cell division protein FtsY; Provisional
Probab=97.69 E-value=0.00077 Score=61.37 Aligned_cols=131 Identities=20% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC--H-HHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT--R-ELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt--~-~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
+-++++|++|+|||+...-.+ ..+.. .+.+++++... | ....|+..... ..++.+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~-----~g~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~~~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK-----NGFSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIKHKYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH-----cCCeEEEecCCcCcHHHHHHHHHHHH----HcCCceecccCCC-----
Confidence 357789999999998754433 23321 23456665532 2 33344433333 3334432211111
Q ss_pred HHHHhcCCCEEEECcHH-HHHHHhcCCCCCCCCccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 206 ESVLRKCPDIVIATPGR-LLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~-l~~~l~~~~~~~l~~~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
.|.. +.+.+.. .....+++|+||.|.++. +..+...+..+.+...+...+++++||...+..
T Consensus 206 -------------dp~~v~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 -------------DPAAVAYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred -------------CHHHHHHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 1122211 012346799999999876 345677888888878778888899999887766
Q ss_pred HHHHhhC
Q psy3143 284 DLVSVSL 290 (337)
Q Consensus 284 ~~~~~~~ 290 (337)
+.+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 5555543
No 189
>PRK04296 thymidine kinase; Provisional
Probab=97.69 E-value=0.00012 Score=61.34 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC---HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT---RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt---~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
.-.++.||+|+|||...+-.+..... .+.+++++-|. +....+ +....++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~----------- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE----------- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEeccccccccCCc-------EecCCCCccc-----------
Confidence 34688999999999876554444431 25578888663 221111 1111111110
Q ss_pred HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
.+.+..+..++..+.. .-.++++|||||||.+.. .++..+++.+......+++++-
T Consensus 59 --------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 --------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred --------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEec
Confidence 1223455555555533 234688999999986422 3345555553333334444443
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00056 Score=62.97 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=82.7
Q ss_pred ccccCCCCHHHHHHHHhC-C----CCCC---hHHHHHHHHH----H-------hCCCCEEEEcCCCCchhHHhHHHHHHH
Q psy3143 92 SFHQMNLSRPLLKAIGAL-N----YIYP---TPIQAATIPV----A-------LLGRDICGCAATGTGKTAAFMLPILER 152 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~-~----~~~p---~~~Q~~~i~~----~-------~~~~~~lv~a~TGsGKT~~~~~~~l~~ 152 (337)
.+...|+++.+.+.|-.. . ...+ ..+....+.. + ..|+.+++.||||+|||+.....+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356678888888877442 1 1112 2222222211 1 125578899999999999865544433
Q ss_pred hhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC
Q psy3143 153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232 (337)
Q Consensus 153 l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 232 (337)
+... ...++.++. +...-.--.+.++.++...++.+. .+.+++.+...+..
T Consensus 162 ~~~~----G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~---------------------~~~~~~~l~~~l~~--- 212 (374)
T PRK14722 162 VMRF----GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH---------------------AVKDGGDLQLALAE--- 212 (374)
T ss_pred HHhc----CCCeEEEEe-cccccccHHHHHHHHHHHcCCceE---------------------ecCCcccHHHHHHH---
Confidence 3211 012344333 222211112334444443344332 23344444444433
Q ss_pred CCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCchh-HHHHHHhh
Q psy3143 233 FSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDA-VNDLVSVS 289 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~~-~~~~~~~~ 289 (337)
+.+.++|+||.+-..... .....+..+.........++++|||...+ +.+.+..|
T Consensus 213 --l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 --LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred --hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 445688999988754322 23334443333223334577889988654 44455544
No 191
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.68 E-value=0.00015 Score=62.84 Aligned_cols=89 Identities=25% Similarity=0.343 Sum_probs=63.8
Q ss_pred CCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCC-ccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCC
Q psy3143 158 RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG-LEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSL 235 (337)
Q Consensus 158 ~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~-~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l 235 (337)
...+.|.+|||+.+--=|..+.+.++.+. ..+..|+.++.. .....+...+. ..++|.||||+||..++.+ +.+.+
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l 199 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSL 199 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCc
Confidence 34457889999988655666666665542 112445555544 36677777776 4689999999999999966 58889
Q ss_pred CCccEEEEecccc
Q psy3143 236 SDIEVLVLDEADR 248 (337)
Q Consensus 236 ~~~~~iViDEad~ 248 (337)
+.+.+||||--|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 9999999997553
No 192
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.68 E-value=0.0003 Score=65.17 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHH------hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 114 PTPIQAATIPVA------LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 114 p~~~Q~~~i~~~------~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
+++-|+.++..+ ..+..+++.|+-|+|||..+-. +.+.+ .. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~-~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYL-RS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHh-cc----ccceEEEecchHHHHHhc
Confidence 467788888877 6778999999999999976422 22332 11 356799999998777665
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=0.0013 Score=51.77 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++.+++.|++|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999997543
No 194
>KOG1132|consensus
Probab=97.66 E-value=0.00043 Score=68.46 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhc------------CC-------CC---------
Q psy3143 112 IYPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLY------------KP-------RD--------- 159 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------------~~-------~~--------- 159 (337)
.+|++.|...+..++ ...+.++.+|||+|||++.+-..+.+... +. ..
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 357888887776655 45689999999999999875444443310 00 00
Q ss_pred --------CCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 160 --------DQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 160 --------~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
-..+++.|-.-|..-..|+.+.+++..
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 014577888888888888888888755
No 195
>KOG1805|consensus
Probab=97.63 E-value=0.00035 Score=69.73 Aligned_cols=125 Identities=21% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..++.-|++|+-.++.-+| .+|.|-+|+|||......+ ..|+ ..+.++|+.+-|...+..+.-.++.+.
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~-----~~gkkVLLtsyThsAVDNILiKL~~~~---- 737 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILV-----ALGKKVLLTSYTHSAVDNILIKLKGFG---- 737 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHH-----HcCCeEEEEehhhHHHHHHHHHHhccC----
Confidence 3567899999999888775 6789999999998754322 2222 137789999999888777665555433
Q ss_pred cEEEEE---------------eCCccHHHH--HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 191 VEVALS---------------VGGLEVKVQ--ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 191 ~~v~~~---------------~~~~~~~~~--~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
+.+.-+ ..+.+.+.. .....+.+.|+.||=-.+ +++.|..+.++|.|||||-.++.
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccCEEEEcccccccc
Confidence 221111 111111111 112234568998883222 23445567799999999998753
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.60 E-value=0.0011 Score=68.26 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+++-|..|+..++.+++ +++.|+.|+|||.+ +-.+...+. ..+.+++.++||--.|..+.. ..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----~~G~~V~~~ApTGkAA~~L~e-------~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----AAGYEVRGAALSGIAAENLEG-------GSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----HcCCeEEEecCcHHHHHHHhh-------ccC
Confidence 3579999999999998764 67999999999986 333444432 136689999999776654321 112
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~ 269 (337)
+.. .|-..|+.-... +...+...++||||||-++... .+..+++.. ....
T Consensus 412 i~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~ga 462 (988)
T PRK13889 412 IAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGA 462 (988)
T ss_pred cch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCC
Confidence 211 121222111111 1223567789999999966533 334444433 4566
Q ss_pred eEEEEeec
Q psy3143 270 QTMLFSAT 277 (337)
Q Consensus 270 q~i~~SAT 277 (337)
++|++.=+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 77776533
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.59 E-value=0.0014 Score=66.40 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
..+++-|..|+..++.+ +-+++.|++|+|||...- .+...+. . .+.++++++||--.|..+.. .++
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~-~----~g~~V~~~ApTg~Aa~~L~~-------~~g 417 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWE-A----AGYRVIGAALSGKAAEGLQA-------ESG 417 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHH-h----CCCeEEEEeCcHHHHHHHHh-------ccC
Confidence 34789999999998874 567899999999997643 3333332 1 25679999999776654431 122
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH-cCCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL-CSRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~-~~~~~ 269 (337)
+... |-.+++..+.. +...+...++||||||-++....+ ..++.. .....
T Consensus 418 ~~a~------------------------Ti~~~~~~~~~-~~~~~~~~~llIvDEasMv~~~~~----~~Ll~~~~~~~~ 468 (744)
T TIGR02768 418 IESR------------------------TLASLEYAWAN-GRDLLSDKDVLVIDEAGMVGSRQM----ARVLKEAEEAGA 468 (744)
T ss_pred Ccee------------------------eHHHHHhhhcc-CcccCCCCcEEEEECcccCCHHHH----HHHHHHHHhcCC
Confidence 2111 11112111111 122356789999999997653333 334442 23466
Q ss_pred eEEEEe
Q psy3143 270 QTMLFS 275 (337)
Q Consensus 270 q~i~~S 275 (337)
++|++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 777766
No 198
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0027 Score=58.51 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+.+.+.||||+|||......+.... ..+.++.++. |.|.-+.. .++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~------~~GkkVglI~aDt~RiaAvE---QLk~yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH------GKKKTVGFITTDHSRIGTVQ---QLQDYVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH------HcCCcEEEEecCCcchHHHH---HHHHHhhhcCCcE-------------
Confidence 4678999999999987655444332 1234455444 33422222 1222222222221
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHcCCCCeEEEEeecCc-hhHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT-DAVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~-~~~~~ 284 (337)
+.+.+|..+.+.+... -....+++|+||-+=+..... ....+..+++...+..-++.+|||.. .++.+
T Consensus 300 --------~v~~d~~~L~~aL~~l--k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHH--HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 2234666666655431 011247899999887654332 33444555554444445667888765 45566
Q ss_pred HHHhhC
Q psy3143 285 LVSVSL 290 (337)
Q Consensus 285 ~~~~~~ 290 (337)
.+..|-
T Consensus 370 i~~~F~ 375 (436)
T PRK11889 370 IITNFK 375 (436)
T ss_pred HHHHhc
Confidence 665543
No 199
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.48 E-value=0.0027 Score=51.09 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=25.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
++++|++|+|||......+..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcch
Confidence 679999999999876554444331 35567777655443
No 200
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.0048 Score=58.27 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~ 205 (337)
++.+++.||||+|||+...-.+....... .+.++.++. |.|.-+. ..+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~------------ 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPV------------ 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEECCccHHHHH---HHHHHHHHHhCCce------------
Confidence 45688999999999987654333322011 133454443 3333222 23333333223322
Q ss_pred HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHc-CCCCeEEEEeecCch-hH
Q psy3143 206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLC-SRTRQTMLFSATMTD-AV 282 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~-~~ 282 (337)
..+.++..+...+.. +..+++||||-+-+... ......+..++... .+....+++|||... ++
T Consensus 282 ---------~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred ---------EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH
Confidence 222345555555543 34578999998865332 22334555555522 233457788998875 45
Q ss_pred HHHHHhhC
Q psy3143 283 NDLVSVSL 290 (337)
Q Consensus 283 ~~~~~~~~ 290 (337)
.+.+..|-
T Consensus 348 ~~~~~~f~ 355 (424)
T PRK05703 348 KDIYKHFS 355 (424)
T ss_pred HHHHHHhC
Confidence 55555443
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00054 Score=53.47 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
++.+++.||+|+|||......+ ..+. . ....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~-~----~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELG-P----PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccC-C----CCCCEEEECCEEcc
Confidence 5678999999999998754433 2221 0 11247777766543
No 202
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.0048 Score=53.67 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=30.8
Q ss_pred CCCccEEEEecccccccccHHH-HHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFAS-QMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~-~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
+.++++|||||++......|.. .+..|+... .....+|+.|---+.++..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 4568899999999876554544 344455433 3356677766655555443
No 203
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00049 Score=64.60 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
|+--|-+||..+..| +.-.+-|.||||||+... .++..+ +.-+||++|++.||-|.+..++.+...
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~--------~rPtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKV--------QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHh--------CCCeEEEecchhHHHHHHHHHHHhCcC
Confidence 455566666555433 477889999999998753 344443 334999999999999999999998755
Q ss_pred cCcE
Q psy3143 189 TSVE 192 (337)
Q Consensus 189 ~~~~ 192 (337)
..+.
T Consensus 84 NaVE 87 (663)
T COG0556 84 NAVE 87 (663)
T ss_pred cceE
Confidence 4433
No 204
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.37 E-value=0.0062 Score=56.06 Aligned_cols=131 Identities=21% Similarity=0.329 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
++-+.+.||||.|||+...-.+....+.. +...-+||.+-|-=.+ .++.++.++.-+++.+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv----------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVV----------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---cCcceEEEEeccchhh--HHHHHHHHHHHhCCceEEe-----------
Confidence 67788999999999987543333332111 1233456666553322 1234455555555555444
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCch-hHHHH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTD-AVNDL 285 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~~ 285 (337)
-+|.-|...+.. +.++++|.+|=+=+-. +......+..+........-.+.+|||... ++...
T Consensus 267 ----------~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 267 ----------YSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred ----------cCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 344444444432 4445566666554321 122344555555544444445666777653 34555
Q ss_pred HHhh
Q psy3143 286 VSVS 289 (337)
Q Consensus 286 ~~~~ 289 (337)
+..|
T Consensus 332 ~~~f 335 (407)
T COG1419 332 IKQF 335 (407)
T ss_pred HHHh
Confidence 5443
No 205
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.0093 Score=52.81 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCchhHH
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~ 283 (337)
+.+.++||||+++..-... ....+..|+... ....++|+.|...+.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4457899999996432222 233444454433 344567766665555544
No 206
>PHA02533 17 large terminase protein; Provisional
Probab=97.35 E-value=0.0029 Score=61.35 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc-
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV- 191 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~- 191 (337)
.+.++|...+..+..++-.++..+-..|||.+....++...+.. .+..+++++|++..|..+++.++.+....+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----KDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 46899999998876677778889999999998876555444332 2458999999999999998888766543221
Q ss_pred -EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCC--C
Q psy3143 192 -EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR--T 268 (337)
Q Consensus 192 -~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~--~ 268 (337)
........ . ..-.+.++..|.+.|.. .....=.+..++|+||+|.+-+. ...+..+...+.. .
T Consensus 135 ~~~~i~~~~-~---~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEWN-K---GSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeecC-c---cEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCC
Confidence 11100000 0 01112344455454421 11112234678999999976542 2233333333322 2
Q ss_pred CeEEEEeecC
Q psy3143 269 RQTMLFSATM 278 (337)
Q Consensus 269 ~q~i~~SAT~ 278 (337)
.+++++|.+-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4566666553
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.014 Score=53.20 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCCccEEEEecccccccccH-HHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHF-ASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~-~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+.++++||||+........| ...+..++... ....++|+.|..-+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44578999999987644433 34455555443 33455655454444444
No 208
>PRK06921 hypothetical protein; Provisional
Probab=97.32 E-value=0.0092 Score=52.74 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=24.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+.+++++|++|+|||.... .+...+..+ .+..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~----~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK----KGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh----cCceEEEEE
Confidence 35689999999999997653 334444321 134566654
No 209
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0089 Score=59.50 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
..++++||||+|.|....| +.+.++++.-+.+..+|+ ++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FIL-aTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFIL-ATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEE-EECCh
Confidence 4679999999998865554 344445555454555444 44433
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.29 E-value=0.008 Score=50.57 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=68.6
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+++.||||+|||....-.+...... +.++.+++ ..|.=|.. .++.+++..++.+.......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~-------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK------GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTES-------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTS--------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc------cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcch--------
Confidence 6789999999999865544444322 22333333 44544433 34444444455544322111
Q ss_pred HhcCCCEEEECcHHHH-HHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 209 LRKCPDIVIATPGRLL-DHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~-~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.|..+. +.+.. ...+++++|+||=+-+... ......+..++....+..-.+++|||...+-...+
T Consensus 67 ----------~~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 67 ----------DPAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp ----------CHHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred ----------hhHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 122222 22221 1123467888888876443 23556777777777666677888999887644333
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 134 ~ 134 (196)
T PF00448_consen 134 L 134 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 211
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.03 Score=48.89 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=35.7
Q ss_pred CCCccEEEEecccccccccH-HHHHHHHHHHc-CCCCeEEEEeecCchhHHH-----HHHhhCC-CCeEEEeCCCc
Q psy3143 235 LSDIEVLVLDEADRMLDEHF-ASQMKEIIRLC-SRTRQTMLFSATMTDAVND-----LVSVSLT-RPVRVFVDNNH 302 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~-~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~-----~~~~~~~-~p~~i~~~~~~ 302 (337)
+.++++|||||+.......+ ...+..|+... .....+|+.|---..++.. +...... ....|.....+
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 56689999999975433333 23444455443 3345677666543343332 2333332 34555554433
No 212
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0072 Score=61.54 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
...++++||||+|+|....+ +.+.++++..+..+.+|+.+ |-.+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~~kL 163 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEPDKV 163 (824)
T ss_pred cCCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CChhhh
Confidence 35789999999999876553 44555555555555555544 444433
No 213
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.25 E-value=0.0022 Score=55.08 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.2
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.++.+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999977544
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=97.20 E-value=0.0016 Score=56.34 Aligned_cols=47 Identities=15% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCccEEEEeccccccc-ccHHHHHHHHHHHcC-CCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLD-EHFASQMKEIIRLCS-RTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~ 281 (337)
+.+.++|||||+|.+.. ..+...+..++.... ...+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 34578999999998763 334445555554443 345677888877654
No 215
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.019 Score=58.29 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=26.8
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
..++++||||||+|....+ +.+.+++..-+..+.+|+. .|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE-CCCchhc
Confidence 4678999999998864333 3444444444445555553 5544443
No 216
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.17 E-value=0.0021 Score=64.25 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.....+++-|..|+-. ...+++|.|..|||||.+.+--+...+.. ....+.++|+++.|+..|..+...+......
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~--~~~~~~~IL~ltft~~AA~em~eRL~~~lg~ 267 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLAR--GQAQPEQILLLAFGRQAAEEMDERIRERLGT 267 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHh--CCCCHHHeEEEeccHHHHHHHHHHHHHhcCC
Confidence 3446789999999853 34578999999999998865544443321 1223568999999999999998888765433
Q ss_pred cCcEEEEE
Q psy3143 189 TSVEVALS 196 (337)
Q Consensus 189 ~~~~v~~~ 196 (337)
.++.+..+
T Consensus 268 ~~v~v~TF 275 (684)
T PRK11054 268 EDITARTF 275 (684)
T ss_pred CCcEEEeH
Confidence 34444433
No 217
>PRK08727 hypothetical protein; Validated
Probab=97.16 E-value=0.0035 Score=54.32 Aligned_cols=47 Identities=9% Similarity=0.120 Sum_probs=25.6
Q ss_pred CCccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 236 SDIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
.++++|||||+|.+... .+...+..++... ....++|+.|...|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 44578999999987643 2333344444333 22345555454444443
No 218
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.16 E-value=0.0077 Score=59.81 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
.+..+..-..+.....+.+..-|.+.+..++..+ -+++.|.-|-|||.+.-+.+..... .. ...+++|++|+.+
T Consensus 197 ~~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~--~~--~~~~iiVTAP~~~ 272 (758)
T COG1444 197 PPLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAAR--LA--GSVRIIVTAPTPA 272 (758)
T ss_pred CCCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHH--hc--CCceEEEeCCCHH
Confidence 3344444455666666666666667777776654 5789999999999998876633321 11 1468999999999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc
Q psy3143 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 174 La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~ 253 (337)
-+..++..+.+-....+..-........ ...........|=+-+|.... .. -+++|||||=.+.
T Consensus 273 nv~~Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~-~DllvVDEAAaIp--- 336 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EE-ADLLVVDEAAAIP--- 336 (758)
T ss_pred HHHHHHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc----------cc-CCEEEEehhhcCC---
Confidence 9888877776655555433211111100 000000112235555554222 11 5799999998764
Q ss_pred HHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 254 FASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 254 ~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+.+..+.... +.++||.|+..
T Consensus 337 -lplL~~l~~~~----~rv~~sTTIhG 358 (758)
T COG1444 337 -LPLLHKLLRRF----PRVLFSTTIHG 358 (758)
T ss_pred -hHHHHHHHhhc----CceEEEeeecc
Confidence 34555554432 45778888764
No 219
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.15 E-value=0.0066 Score=57.83 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
..++++|++|+|||... ..+.+.+.... ++.+++++.+ .++...+...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~~---------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKTH---------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHhh----------------------
Confidence 46889999999999543 34444443211 2456776655 455444433332100
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+.+..+... +.++++|||||+|.+... .....+..++..+ ....|+|+.|-..|..+
T Consensus 195 ------------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ------------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ------------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111111111 346789999999987543 2344455554443 33446665554444443
No 220
>PRK05642 DNA replication initiation factor; Validated
Probab=97.14 E-value=0.0032 Score=54.60 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=29.5
Q ss_pred CCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
+.+++++|||++|.+.. ..+...+..++..+......++++++.++.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 33467999999997754 345566666666554433445666665543
No 221
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.14 E-value=0.012 Score=61.24 Aligned_cols=137 Identities=18% Similarity=0.094 Sum_probs=79.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhC-CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
+++..+......+ ..+++-|..++..+.. ++-+++.|+.|+|||.+.- ++...+. ..+.+++.++||--.|.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e-----~~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWE-----AAGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHH-----HcCCeEEEEcCcHHHHH
Confidence 4444454443333 4589999999998864 4567899999999998743 3333331 13678999999977665
Q ss_pred HHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 177 QVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 177 q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
.+.+ ..++... |-..++..... +...+..-++||||||-++...
T Consensus 440 ~L~e-------~~Gi~a~------------------------TIas~ll~~~~-~~~~l~~~~vlVIDEAsMv~~~---- 483 (1102)
T PRK13826 440 GLEK-------EAGIQSR------------------------TLSSWELRWNQ-GRDQLDNKTVFVLDEAGMVASR---- 483 (1102)
T ss_pred HHHH-------hhCCCee------------------------eHHHHHhhhcc-CccCCCCCcEEEEECcccCCHH----
Confidence 4422 2222221 11111100001 1223566789999999966433
Q ss_pred HHHHHHHHcC-CCCeEEEEeec
Q psy3143 257 QMKEIIRLCS-RTRQTMLFSAT 277 (337)
Q Consensus 257 ~~~~i~~~~~-~~~q~i~~SAT 277 (337)
.+..+++... ...++|++.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 3334444443 45677776543
No 222
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.14 E-value=0.0011 Score=66.33 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
+++-|.+|+.+ ...+++|.|.+|||||.+...-+.+.+.. ....+.++|+|+.|+..|..+...+..+.
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~--~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG--CGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 68899999865 35688999999999999866555554422 12235689999999999999988888764
No 223
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.13 E-value=0.0002 Score=58.81 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=54.7
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhc
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 211 (337)
++.|+-|-|||.+.-+.+...+. ....+++|.+|+.+-+..+++.+..-....+.+....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-----~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-----KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----hcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccc
Confidence 57899999999887665544331 1125799999999988887776655443333322000000 000011112
Q ss_pred CCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 212 ~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...|-+..|..+...- ...+++|||||=.+. .+.+..+ +.... .++||.|+..
T Consensus 73 ~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaIp----~p~L~~l---l~~~~-~vv~stTi~G 125 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--------PQADLLIVDEAAAIP----LPLLKQL---LRRFP-RVVFSTTIHG 125 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHH---HCCSS-EEEEEEEBSS
T ss_pred cceEEEECCHHHHhCc--------CCCCEEEEechhcCC----HHHHHHH---HhhCC-EEEEEeeccc
Confidence 3467777777655421 134899999998654 3444444 33333 4667888753
No 224
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.10 E-value=0.016 Score=54.61 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=23.9
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..++++|++|+|||... ..+.+.+..+ ..+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~---~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN---NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh---CCCCcEEEEE
Confidence 35789999999999765 3344444322 1245677764
No 225
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.09 E-value=0.015 Score=51.36 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.++++.||+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999987643
No 226
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.08 E-value=0.0033 Score=60.57 Aligned_cols=149 Identities=12% Similarity=0.155 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhC-----C----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 116 PIQAATIPVALL-----G----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 116 ~~Q~~~i~~~~~-----~----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
|+|..++-.++- | +.+++.-+-|.|||......++..++.. ...+..++++++++..|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--CccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 567777766651 2 3588889999999987655444444322 2246789999999999999999999887
Q ss_pred hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
......... .+ ... ..... -.|.....+.+...+... ...+=.+..++|+||+|.+-+......+..-....
T Consensus 79 ~~~~~l~~~-~~-~~~---~~~~~--~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 79 EASPELRKR-KK-PKI---IKSNK--KEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR 151 (477)
T ss_pred HhChhhccc-hh-hhh---hhhhc--eEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC
Confidence 653211100 00 000 00001 123332223333222222 12222357899999999887654444444333332
Q ss_pred CCCCeEEEE
Q psy3143 266 SRTRQTMLF 274 (337)
Q Consensus 266 ~~~~q~i~~ 274 (337)
++.+++.+
T Consensus 152 -~~pl~~~I 159 (477)
T PF03354_consen 152 -PNPLIIII 159 (477)
T ss_pred -CCceEEEE
Confidence 34455444
No 227
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.017 Score=56.84 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=26.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
..++++||||+|+|....+ ..+..+++..+....+|+ .+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EECCh
Confidence 4678999999998765544 444555555455555554 44433
No 228
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.08 E-value=0.0035 Score=54.42 Aligned_cols=42 Identities=5% Similarity=0.200 Sum_probs=25.0
Q ss_pred ccEEEEeccccccc-ccHHHHHHHHHHHc-CCC-CeEEEEeecCch
Q psy3143 238 IEVLVLDEADRMLD-EHFASQMKEIIRLC-SRT-RQTMLFSATMTD 280 (337)
Q Consensus 238 ~~~iViDEad~l~~-~~~~~~~~~i~~~~-~~~-~q~i~~SAT~~~ 280 (337)
+++|||||+|.+.. ..+...+..++..+ ... .++|+ |++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCCh
Confidence 47899999998764 34555555555443 223 35554 555444
No 229
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.06 E-value=0.0052 Score=51.03 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=33.3
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
+++.|++|+|||...+-.+...+. .+.+++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999877666665552 2556888764 35556666666554
No 230
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.03 E-value=0.0089 Score=51.51 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=25.0
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCC-eEEEEeecCch
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR-QTMLFSATMTD 280 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~-q~i~~SAT~~~ 280 (337)
..++|||||+|.+.... ...+..++....... .+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 35689999999875433 334444444333233 35677777654
No 231
>PLN03025 replication factor C subunit; Provisional
Probab=97.03 E-value=0.034 Score=50.62 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
...+++||||+|.|.... ...+..++...+..+.++ ++++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeCCc
Confidence 357899999999986443 344555555545455544 444433
No 232
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.014 Score=57.71 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
..++++||||||+|....+ +.+.+++..-+..+.+|+ ..|-+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL-~Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL-ATTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE-ecCCcc
Confidence 5689999999998865444 333334444444444444 344333
No 233
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.032 Score=56.02 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc-CC-HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV-PT-RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~-Pt-~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+-+.+.||||+|||+.....+....... .+.++.++. -| |.-+ ...++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~----G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE----GADQLALLTTDSFRIGA---LEQLRIYGRILGVPV------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc----CCCeEEEecCcccchHH---HHHHHHHHHhCCCCc-------------
Confidence 4567999999999988655443332111 112444433 22 2112 223333333333322
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCCeEEEEeecCch-hHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTD-AVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~q~i~~SAT~~~-~~~~ 284 (337)
.++.+|..+...+.. +.+.++|+||=+=+.... .....+..+.....+...++++|||... .+.+
T Consensus 246 --------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 --------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred --------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 223466666665543 445678888877655422 2334444444444445567777888653 3455
Q ss_pred HHHhh
Q psy3143 285 LVSVS 289 (337)
Q Consensus 285 ~~~~~ 289 (337)
.+..|
T Consensus 313 i~~~f 317 (767)
T PRK14723 313 VVHAY 317 (767)
T ss_pred HHHHH
Confidence 55554
No 234
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.00 E-value=0.016 Score=52.58 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=26.9
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
..++|||||+|.+........+..++...+..+++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998844444556666677666667666544
No 235
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.034 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILE 151 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~ 151 (337)
++-++++||+|+|||....-.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999876544433
No 236
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.058 Score=51.87 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=32.8
Q ss_pred ccccCCCCHHHHHHHHhC-CC-CCChHHHHHHHHH------------HhCCCCEEEEcCCCCchhHHhHHHH
Q psy3143 92 SFHQMNLSRPLLKAIGAL-NY-IYPTPIQAATIPV------------ALLGRDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~-~~-~~p~~~Q~~~i~~------------~~~~~~~lv~a~TGsGKT~~~~~~~ 149 (337)
....+|+++.+.+.|... .- ............. +..|+.+.++|+||+|||......+
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 345667888888777442 11 1111111122211 2245678899999999998764433
No 237
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.028 Score=49.62 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC--CH-HHHHHHHHHHHHHhhccCcEEEEEeCCccHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP--TR-ELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P--t~-~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~ 203 (337)
.+..+.++|++|+|||..+..-+.... . .+.++.++.- .| ..+.|+. .++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~--~----~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~--------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH--G----KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVI--------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH--H----cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEE---------
Confidence 346788999999999997765443322 1 1334444432 22 2333332 22222222221
Q ss_pred HHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCc-hh
Q psy3143 204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMT-DA 281 (337)
Q Consensus 204 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~-~~ 281 (337)
...+|..+...+..- -....++++|||-+=++.. ......+..+++...+..-++++|||.. .+
T Consensus 135 ------------~~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 135 ------------AVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ------------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 113555555544321 1124578999999876543 2334445555555555545677899875 46
Q ss_pred HHHHHHhhC
Q psy3143 282 VNDLVSVSL 290 (337)
Q Consensus 282 ~~~~~~~~~ 290 (337)
+.+.++.|-
T Consensus 201 ~~~~~~~f~ 209 (270)
T PRK06731 201 MIEIITNFK 209 (270)
T ss_pred HHHHHHHhC
Confidence 666666543
No 238
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.97 E-value=0.021 Score=54.54 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=26.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
..++++||+|+|||..... +.+.+..+. .+.+++++. ...+...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~---~~~~v~yi~-~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKN---PNAKVVYVT-SEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhC---CCCeEEEEE-HHHHHHH
Confidence 4689999999999976543 334443211 244566664 3344433
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0081 Score=52.70 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
.+.++++.|++|+|||..+..-. +.+.. .+.-++.+++.+|+.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~~------~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELLK------AGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHHH------cCCeEEEEEHHHHHHHHHHH
Confidence 67799999999999998764433 33331 23345555666776665443
No 240
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.95 E-value=0.0049 Score=61.95 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.. ......++|+|+.|+..|.++...+.....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN--CGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 57889998864 45789999999999999876655555521 112356899999999999999888877553
No 241
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.045 Score=50.65 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=27.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCC-CCeEEEEeecCchh
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSR-TRQTMLFSATMTDA 281 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~-~~q~i~~SAT~~~~ 281 (337)
...-+||+||+|.|....- ..+..|.+.... ..+++++.-+-...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHH
Confidence 3456899999999987653 455555554433 34555554443333
No 242
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.91 E-value=0.0095 Score=56.00 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
|-......+..+..+++++++|++|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566677778889999999999999997764
No 243
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.90 E-value=0.021 Score=61.63 Aligned_cols=62 Identities=26% Similarity=0.236 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHh--HHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAF--MLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~--~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
.+++-|..|+..++.. +-++|.|..|+|||.+. ++.++..+. ...+.+++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~----e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP----ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh----hccCceEEEEechHHHHHHH
Confidence 5799999999999865 67889999999999874 223333221 12356799999998776654
No 244
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.89 E-value=0.0076 Score=60.00 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|+-.|..++..+..+ +..++.|.||||||+...- ++..+ +..+|||+|+..+|.|++..++.+..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~--------~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV--------NRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh--------CCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 5788888888876543 2667999999999987543 33332 33499999999999999999998864
No 245
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.89 E-value=0.0042 Score=55.09 Aligned_cols=54 Identities=24% Similarity=0.103 Sum_probs=33.5
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+..|.-+++.|++|+|||......+.+.+.. .+.+++++.-- +-..++...+..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEcc-cCHHHHHHHHHH
Confidence 4466788999999999998766655554421 14567777632 223444444433
No 246
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.88 E-value=0.0044 Score=58.23 Aligned_cols=138 Identities=14% Similarity=0.235 Sum_probs=76.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH-HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE-LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~-La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
-.++.|..|||||.+..+-++..++.. ..+.+++++-|+.. +...++..+.......++....-...... ....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~---~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~ 77 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN---KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKI 77 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc---CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEe
Confidence 367899999999999888887777644 13577999999987 55566777776554444321111111100 0000
Q ss_pred HhcCCCEEEECc-HHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 209 LRKCPDIVIATP-GRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 209 ~~~~~~Ilv~Tp-~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...+..|++..- +.-.+ ......+.++.+|||..+....|...+.++ +. +...+.+++|.++..
T Consensus 78 ~~~g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~~~~~l~~rl-r~-~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFEDIKELIPRL-RE-TGGKKFIIFSSNPES 142 (396)
T ss_pred cCCCeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHHHHHHHHHHh-hc-cCCccEEEEEcCcCC
Confidence 011334555543 11111 112334689999999988544444444332 22 122224677887654
No 247
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.87 E-value=0.029 Score=55.16 Aligned_cols=140 Identities=9% Similarity=0.120 Sum_probs=79.2
Q ss_pred HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC--------cEEEE
Q psy3143 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS--------VEVAL 195 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~--------~~v~~ 195 (337)
.....+-.++.+|-|.|||++..+.+...+.. .+.+++|++|...-+.++++.+.......+ ..+..
T Consensus 183 ~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~ 257 (752)
T PHA03333 183 DEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVT 257 (752)
T ss_pred HHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEE
Confidence 33456678889999999999877665544422 256899999999999999888777665222 11121
Q ss_pred EeCCcc-HHHHH-HHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 196 SVGGLE-VKVQE-SVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 196 ~~~~~~-~~~~~-~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
..|+.. ..... .... ....|.+++- ......-..++++|+|||..+-..-+.. +.-++.. ...+++
T Consensus 258 vkgg~E~I~f~~p~gak~G~sti~F~Ar--------s~~s~RG~~~DLLIVDEAAfI~~~~l~a-IlP~l~~--~~~k~I 326 (752)
T PHA03333 258 LKGTDENLEYISDPAAKEGKTTAHFLAS--------SPNAARGQNPDLVIVDEAAFVNPGALLS-VLPLMAV--KGTKQI 326 (752)
T ss_pred eeCCeeEEEEecCcccccCcceeEEecc--------cCCCcCCCCCCEEEEECcccCCHHHHHH-HHHHHcc--CCCceE
Confidence 222211 00000 0000 0123333331 1112232457899999999876533333 3323222 456777
Q ss_pred EEeecCc
Q psy3143 273 LFSATMT 279 (337)
Q Consensus 273 ~~SAT~~ 279 (337)
++|.+-.
T Consensus 327 iISS~~~ 333 (752)
T PHA03333 327 HISSPVD 333 (752)
T ss_pred EEeCCCC
Confidence 7888764
No 248
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.87 E-value=0.0047 Score=59.11 Aligned_cols=90 Identities=19% Similarity=0.086 Sum_probs=57.7
Q ss_pred CCCHHH-HHHHHhCCCCCChH-------HHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 97 NLSRPL-LKAIGALNYIYPTP-------IQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 97 ~l~~~l-~~~l~~~~~~~p~~-------~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
++..++ ...|.+.--.++.. -|-++|.. -.++-++|.|..|||||.+++-=+...++.....-....|||+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEE
Confidence 344444 44565554444432 23333321 2345688999999999998765554444433333334449999
Q ss_pred cCCHHHHHHHHHHHHHHhh
Q psy3143 169 VPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~ 187 (337)
.|++-+..-+.+++-.++.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999999999999988874
No 249
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.86 E-value=0.039 Score=52.54 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..++++||+|+|||.... .+.+.+.... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~---~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE---PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC---CCCeEEEEEH
Confidence 468999999999997653 3344443211 2456777754
No 250
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.86 E-value=0.0028 Score=64.19 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++.+ ...+++|.|..|||||.+...=+.+.+. . ......++|+|+.|+..|..+.+.+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~-~-~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLS-V-ENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHH-c-CCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999999865 3568999999999999986554444442 1 122456899999999999999998888754
No 251
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.85 E-value=0.0095 Score=52.89 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCccEEEEecccccccccHHH--HHHHHHHHcCCCCeE
Q psy3143 236 SDIEVLVLDEADRMLDEHFAS--QMKEIIRLCSRTRQT 271 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~--~~~~i~~~~~~~~q~ 271 (337)
-.++++||||.|.++..+... .+...++.+.+..++
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 457899999999988765333 333445555555444
No 252
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.83 E-value=0.01 Score=50.92 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+..+++++||.+|.+.... +...+..++..+ ..+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4457899999999987643 455555555544 44667777776776654
No 253
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.82 E-value=0.025 Score=45.70 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=76.4
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH-HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG-VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La-~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
+.|..++|.|||.+++--++..+ +.+.+++++.=.+.-. .--...+..+ .++.+... +.......
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~------~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~--g~~~~~~~--- 70 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL------GHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRM--GRGFFWTT--- 70 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEEC--CCCCccCC---
Confidence 55677889999999877777666 2466788854222210 0001223333 23333221 21110000
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
....--.......+..... .+....+++||+||+-..+..++ ...+..+++..+...-+|+.+-..|+.+.+.+.
T Consensus 71 -~~~~~~~~~a~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 71 -ENDEEDIAAAAEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred -CChHHHHHHHHHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 0000000000122222222 23356789999999998766663 346667788888888888888888888877664
No 254
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0061 Score=53.67 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 87 ~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
+....+|+++++++-+.+.+. ....=++|.||||||||.. +.+++.++..
T Consensus 102 p~~i~~~e~LglP~i~~~~~~------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAE------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHh------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 355678888888776655321 1223588999999999987 4567787753
No 255
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.029 Score=55.58 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=24.9
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+...+++||||+|.|....+ ..+.+.+...+..+.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 45679999999997754333 34444455445556555544
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=96.79 E-value=0.03 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=19.8
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+-.+.++++.||+|+|||.......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4467899999999999997665443
No 257
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.79 E-value=0.025 Score=53.46 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=29.3
Q ss_pred cEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh
Q psy3143 239 EVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 239 ~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
++||||.+-++. +......+..+.....+..-++.++|+...+..+.+..|
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 677788775432 223444555555555555566677777766554444443
No 258
>PRK04195 replication factor C large subunit; Provisional
Probab=96.78 E-value=0.024 Score=54.75 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.++++||+|+|||.....
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999976543
No 259
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.78 E-value=0.021 Score=47.39 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=81.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
....+++.+++|.|||.+++--++..+ +.+.+|+++.=.+--.. ......+....++.+... +.......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~------g~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~--g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV------GHGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVM--GTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH------HCCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEEC--CCCCcccC
Confidence 456899999999999999877777666 34677888864332100 011111211112332221 21110000
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCchhHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 284 (337)
...+--.......+..... .+.-..+++||+||+-..+..++ ...+..+++..|...-+|+..-..|+++.+
T Consensus 91 ----~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 ----QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ----CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000111122332222 22345689999999998887774 345666777777777888877778888877
Q ss_pred HHH
Q psy3143 285 LVS 287 (337)
Q Consensus 285 ~~~ 287 (337)
.+.
T Consensus 165 ~AD 167 (191)
T PRK05986 165 AAD 167 (191)
T ss_pred hCc
Confidence 664
No 260
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.77 E-value=0.017 Score=63.05 Aligned_cols=65 Identities=23% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 112 IYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
..+++.|..|+..++.+ +-++|.|..|+|||...- .++..+.. .....+.+++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~-l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNT-LPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHH-hhcccCceEEEECCcHHHHHHH
Confidence 35799999999999875 467899999999998742 22222211 1112356789999998776554
No 261
>PF05729 NACHT: NACHT domain
Probab=96.75 E-value=0.11 Score=41.83 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=25.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
-++|.|++|+|||....- ++..+...........+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK-LAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHH-HHHHHHhcCcccccceEEEEEeehhhhh
Confidence 478999999999986543 3444432222111123455555554443
No 262
>CHL00181 cbbX CbbX; Provisional
Probab=96.75 E-value=0.061 Score=48.11 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45789999999999987644
No 263
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.75 E-value=0.0038 Score=63.22 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++.+ ...+++|.|..|||||.+..-=+...+. . ....+.++|+|+-|+..|..+.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~-~-~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQ-V-ENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHH-c-CCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999999864 3568999999999999886554444442 1 122456899999999999999998888654
No 264
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.74 E-value=0.023 Score=63.31 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=78.7
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.+++-|..++..++.. +-.++.|+.|+|||.+. -.++..+. ..+.++++++||...+..+.+..-
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~-----~~G~~V~~lAPTgrAA~~L~e~~g------- 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLAS-----EQGYEIQIITAGSLSAQELRQKIP------- 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHhc-------
Confidence 4688999999998875 46789999999999764 33333331 136789999999876665443211
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCC
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTR 269 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~ 269 (337)
.... ........+.. ..-..|...++ + ....+..-++||||||-++. ...+..+++.. ..+.
T Consensus 496 ~~A~------Ti~~~l~~l~~--~~~~~tv~~fl----~-~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 496 RLAS------TFITWVKNLFN--DDQDHTVQGLL----D-KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNS 558 (1960)
T ss_pred chhh------hHHHHHHhhcc--cccchhHHHhh----c-ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCC
Confidence 1100 00001111111 11122222222 1 12335677899999999764 34455555544 4678
Q ss_pred eEEEEeec
Q psy3143 270 QTMLFSAT 277 (337)
Q Consensus 270 q~i~~SAT 277 (337)
++|++.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877643
No 265
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.017 Score=52.62 Aligned_cols=41 Identities=20% Similarity=-0.012 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHhCCC----CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVALLGR----DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~----~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
..|||...+..+.... -.+++||.|.|||..+... ...++.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~-A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL-AAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH-HHHHcC
Confidence 3688888888776442 4789999999999876543 344443
No 266
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.062 Score=52.30 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=25.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+++||||||+|....+ +.+...+..-+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 45678999999999865443 34444444444455555544
No 267
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.71 E-value=0.013 Score=62.93 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc-cCcE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVE 192 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~-~~~~ 192 (337)
.|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ....++|+|+=|+..|..+...+...... ..-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 4889999997 3688999999999999998777666666422 22356999999999999988777764321 110
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCC-CccEEEEecccc
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLS-DIEVLVLDEADR 248 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~-~~~~iViDEad~ 248 (337)
........+.+..-...-|+|-..+...+.+.....+. +-.+=|.||...
T Consensus 76 ------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00111112223333467899998887655443121111 113456888875
No 268
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.026 Score=53.70 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999998875543
No 269
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.69 E-value=0.022 Score=55.73 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc--CcEEEEEeCCccHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT--SVEVALSVGGLEVKVQ 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~--~~~v~~~~~~~~~~~~ 205 (337)
.+-.++..|--.|||+... +++..++..- .+.++++++|.+..+..+++.+....... +..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~---~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF---RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC---CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 4668899999999999765 5555544222 36789999999999999999888765421 111212222 111
Q ss_pred HHHHhcC--CCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 206 ESVLRKC--PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 206 ~~~~~~~--~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.-.+.++ ..|.++|. .+.+...=..++++|+|||+.+-+.-+...+-.+. ..+.++|.+|.|-+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~---~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLN---QTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHHHHHh---ccCccEEEEecCCCC
Confidence 0011112 25666641 22223334478999999999877655544443332 237889999988554
No 270
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.69 E-value=0.013 Score=58.52 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|+..|..++..+..+ +..++.|.+|||||+.+.. ++... +..+|||+|+...|.|++..+..+..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~--------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL--------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 5899999999887533 2577999999999987542 33332 34599999999999999999988763
No 271
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.046 Score=53.73 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=16.7
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.+|++||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876644
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.64 E-value=0.044 Score=51.55 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=31.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEE
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVAL 195 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~ 195 (337)
-++++|++|+|||+...-.+.. +. . .+.+++++. |.|.-|.. +++.++...++.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~-~----~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQ-R----KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYG 160 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HH-H----CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEe
Confidence 4678999999999775433322 21 1 244566665 44554443 334444444555443
No 273
>KOG1001|consensus
Probab=96.64 E-value=0.012 Score=58.49 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=70.8
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCC---CCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKP---RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
..|+.-..|-|||...+..++..=.... ......-.||++|+.. ..|....+.+......+.+.+++|.. ..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~-~~qW~~elek~~~~~~l~v~v~~gr~----kd 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSL-LTQWKTELEKVTEEDKLSIYVYHGRT----KD 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHH-HHHHHHHHhccCCccceEEEEecccc----cc
Confidence 5788889999999886544433221111 0113455888999744 45555555655555567777777711 12
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~ 253 (337)
......++|+++|++.+.. . .+.--.+-.+|+||||.+-...
T Consensus 229 ~~el~~~dVVltTy~il~~----~-~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 229 KSELNSYDVVLTTYDILKN----S-PLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred cchhcCCceEEeeHHHhhc----c-cccceeEEEEEeccccccCCcc
Confidence 2223456899999998874 1 1112345579999999876544
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.63 E-value=0.098 Score=47.79 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=25.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...++|||||+|.+.. .....+..++...+..+++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 4568999999998753 33445555666555566655543
No 275
>PF13173 AAA_14: AAA domain
Probab=96.63 E-value=0.046 Score=42.47 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=26.6
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
.-.+|+|||+|.+- +|...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999874 5777777777754 45666654443
No 276
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.63 E-value=0.091 Score=53.36 Aligned_cols=41 Identities=12% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeec
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSAT 277 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT 277 (337)
..+.+|||||+|.|.... ...+..|++.. ....+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346789999999987543 33444444432 234555554444
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.63 E-value=0.038 Score=42.72 Aligned_cols=16 Identities=38% Similarity=0.304 Sum_probs=13.6
Q ss_pred EEEEcCCCCchhHHhH
Q psy3143 131 ICGCAATGTGKTAAFM 146 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~ 146 (337)
++++||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999997653
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=96.62 E-value=0.044 Score=51.75 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=42.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCcc-HHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLE-VKVQE 206 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~-~~~~~ 206 (337)
-++++|++|+|||+...-.+..... . .+.+++++. +.|..+.. .+..++...++.+.....+.. .....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~-~----~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK-K----KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-h----cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 4678999999999876544433221 1 134455554 45554432 223333444555443221111 11111
Q ss_pred ----HHHhcCCC-EEEECcHHH
Q psy3143 207 ----SVLRKCPD-IVIATPGRL 223 (337)
Q Consensus 207 ----~~~~~~~~-Ilv~Tp~~l 223 (337)
.....++| |+|=|||++
T Consensus 174 ~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCCCc
Confidence 11123343 677788765
No 279
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.084 Score=51.86 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=27.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
....+++||||+|.|....+ +.+...+...+..+-+|+.+ |-+..+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~kll 162 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPEKVL 162 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChHhhH
Confidence 46789999999998865543 33444444444444444433 5444333
No 280
>KOG0953|consensus
Probab=96.61 E-value=0.0021 Score=60.75 Aligned_cols=98 Identities=27% Similarity=0.224 Sum_probs=63.5
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-++-+|||.||||.-+ ++++. ...+.++--|.|-||+.+++.+...+ +.+.++.|.........
T Consensus 193 Ii~H~GPTNSGKTy~A----Lqrl~------~aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA----LQRLK------SAKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred EEEEeCCCCCchhHHH----HHHHh------hhccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--
Confidence 3556899999999664 44442 23458999999999999999988765 55555555432211110
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
...++.+-||-++.- .-..+++.||||+++|-+.
T Consensus 257 ~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCc
Confidence 122466667743221 1245789999999988764
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.071 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+..+++||.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 368999999999998765543
No 282
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.60 E-value=0.058 Score=47.84 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
+-++++|++|+|||....-.+.... . .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~--~----~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK--K----QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--h----cCCEEEEEe
Confidence 4567889999999987654433322 1 245666665
No 283
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.60 E-value=0.0057 Score=50.03 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=76.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH-HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG-VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La-~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
-+.+..++|.|||.+++--++..+ +.+.+|+|+.=.+.-. .-=...+..+ ++.+...-.+.....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~------~~g~~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~~---- 72 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRAL------GHGKKVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWET---- 72 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH------HCCCeEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeecC----
Confidence 356788899999999877677666 3466787774222110 0001122221 233322211111000
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.+..--.......+..... .+.-..+++||+||+-..+..++. ..+..+++..|...-+|+..-..|+.+.+++
T Consensus 73 --~~~~~~~~~~~~~~~~a~~--~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 73 --QNREADTAIAKAAWQHAKE--MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred --CCcHHHHHHHHHHHHHHHH--HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 0000000001122222222 222357899999999987776633 4566777888888888888888888888766
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 149 D 149 (173)
T TIGR00708 149 D 149 (173)
T ss_pred c
Confidence 4
No 284
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.59 E-value=0.012 Score=48.22 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=78.8
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-HHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-YQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
++|....|-|||++++=-++..+ +.+.|++|+.=.+--...= ...+..+. ..+....+-.+.....+. .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~------GhG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~--~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL------GHGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQD--R 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh------cCCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcC--c
Confidence 66788899999999877777776 4677888886332211110 11222221 111111111111111110 0
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
.. ++ ..+...+..... .+.-..+++||+||....+..++. ..+..+++..|...-+|+..-..|+.+.+.+.
T Consensus 101 ~~--d~--~aa~~~w~~a~~--~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 101 EA--DI--AAAKAGWEHAKE--ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred HH--HH--HHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 00 22 233333433322 222346899999999988877643 45666777777777778777778888877765
Q ss_pred h
Q psy3143 288 V 288 (337)
Q Consensus 288 ~ 288 (337)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 3
No 285
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.57 E-value=0.037 Score=52.70 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=23.9
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..++++||+|+|||.... .+.+.+.. .+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~-----~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE-----SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH-----cCCCEEEeeH
Confidence 468999999999997654 34444432 2456777753
No 286
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.016 Score=56.84 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=25.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...++++||||+|+|....+ +.+.+.++.-+.++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 45689999999998865544 33333444444556555554
No 287
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.56 E-value=0.023 Score=46.43 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=69.5
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 210 (337)
+.|....|-|||.+++=-++..+ +.+.||+|+.=.+.- ........+....++.+..+ +...........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~--g~~f~~~~~~~~ 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERF--GKGFVWRMNEEE 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE----TT----GGGHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHH------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEc--CCcccccCCCcH
Confidence 55677889999999877777766 467889999765541 11122333332223333221 211111100000
Q ss_pred cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 211 ~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
. + .......++.... .+.-..+++||+||+-..+..++. ..+..+++..+...-+|+..-..|+.+...+.
T Consensus 76 ~--~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 E--D--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp H--H--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred H--H--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 1 0111222332222 233467899999999987777643 45667777777788888888888888888765
No 288
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.046 Score=53.91 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+...+++||||+|.|....+ +.+...++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 56789999999998864443 33334444445555555543
No 289
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.027 Score=54.51 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
..++++||||||+|....+ +.+.+.++..+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4689999999998875554 34444555555566555544
No 290
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.0031 Score=60.15 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=70.9
Q ss_pred EEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH-Hh-hccCcEEEEEeCCccHHH----HH
Q psy3143 133 GCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LA-QFTSVEVALSVGGLEVKV----QE 206 (337)
Q Consensus 133 v~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-l~-~~~~~~v~~~~~~~~~~~----~~ 206 (337)
..+.||||||++..-.+++...+. -...|+.|...........-+.. +. +++ +.-.+.+++....- ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-----yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkvn~f 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-----YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKVNNF 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-----hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeeeccc
Confidence 467899999998877666654211 11355665554443332211111 10 000 00000111111000 00
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCC--CCC---CCCcc-EEEEecccccccc-------------cHHHHHHHHHHHcCC
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTP--SFS---LSDIE-VLVLDEADRMLDE-------------HFASQMKEIIRLCSR 267 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~---l~~~~-~iViDEad~l~~~-------------~~~~~~~~i~~~~~~ 267 (337)
.--..+..|.++|.+.|...+.+.+ .+. +.+.+ +++-||||++... +|...+. +...-++
T Consensus 76 sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~-la~~~nk 154 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK-LALEQNK 154 (812)
T ss_pred CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH-HHHhcCC
Confidence 0123557899999999987775432 232 44444 4567999998642 1222221 1112244
Q ss_pred CCeEEEEeecCchh
Q psy3143 268 TRQTMLFSATMTDA 281 (337)
Q Consensus 268 ~~q~i~~SAT~~~~ 281 (337)
..-++.+|||.+.+
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 55677899999944
No 291
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.52 E-value=0.061 Score=43.75 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
...+++|||+||.|.... .+.+.++++.-+..+.+|++| +-+..+.
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t-~~~~~il 146 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILIT-NNPSKIL 146 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEE-S-GGGS-
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEE-CChHHCh
Confidence 578999999999886444 355555555555555555544 4444433
No 292
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.047 Score=45.18 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc-EEEEEeCCccHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV-EVALSVGGLEVKVQE 206 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~ 206 (337)
++=.+++||+.||||...+.-+..... .+.++++..|-..- ..+. .|..-.| ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G-~~----- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAIDT-------------RYGVGKVSSRIG-LS----- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEeccccc-------------ccccceeeeccC-Cc-----
Confidence 344689999999999875554444432 35678888875221 1111 1222112 11
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~ 264 (337)
..-++|-.+..+...+.... ....+++|.||||+-+. ......+..+...
T Consensus 59 -----~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQF~~-~~~v~~l~~lad~ 108 (201)
T COG1435 59 -----SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQFFD-EELVYVLNELADR 108 (201)
T ss_pred -----ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhHhCC-HHHHHHHHHHHhh
Confidence 12467777778888776531 12228899999999643 3333444455444
No 293
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.047 Score=53.53 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCCccEEEEeccccccccc-HHHHHHHHHHHc-CCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLC-SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~ 282 (337)
+.++++||||++|.+.... +...+..++..+ ....++|+.|-..+..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 3457899999999876533 344444555444 33567776555555444
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.49 E-value=0.062 Score=46.46 Aligned_cols=51 Identities=14% Similarity=-0.052 Sum_probs=32.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|.-+++.|++|+|||...+..+...+. ++.++++++.. +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~------~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ------NGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEeCC-CCHHHHHHHHHH
Confidence 4678899999999999876555554431 24567888743 333444444443
No 295
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.089 Score=50.47 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchhHHhHHH
Q psy3143 130 DICGCAATGTGKTAAFMLP 148 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~ 148 (337)
.++++||+|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876553
No 296
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.11 Score=50.29 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.8
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++||.|+|||..+.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998875543
No 297
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.47 E-value=0.018 Score=49.59 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc-------CcEEEEEeCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-------SVEVALSVGG 199 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~-------~~~v~~~~~~ 199 (337)
.|..+++.|++|+|||...+..+.+.+.. .+.++++++-. +-..++.+.+..+.-.. .+.+.-....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-----~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-----FGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-----cCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 34578999999999998877777776632 04468888743 33455555555443100 0111111100
Q ss_pred ccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc----ccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD----EHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 200 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~----~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
... . . -..+..+...+.. .+.-...+.+|||-...+.. ..++..+..+...+.....+.+++
T Consensus 92 ~~~--~--------~--~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt 157 (226)
T PF06745_consen 92 RIG--W--------S--PNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLT 157 (226)
T ss_dssp GST-----------T--SCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccc--c--------c--ccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 000 0 0 1233334333322 11111238999999987722 235666777777766566666777
Q ss_pred ecC
Q psy3143 276 ATM 278 (337)
Q Consensus 276 AT~ 278 (337)
+..
T Consensus 158 ~~~ 160 (226)
T PF06745_consen 158 SEM 160 (226)
T ss_dssp EEE
T ss_pred Ecc
Confidence 663
No 298
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.46 E-value=0.059 Score=49.78 Aligned_cols=129 Identities=21% Similarity=0.174 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
.+.+.++|+.|+|||...-+. ++.+ ....+.| +...+.+..+++.+..+. |+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~l----p~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~------- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSL----PIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQD------- 114 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhC----Ccccccc----ccccHHHHHHHHHHHHHh-----------CCC-------
Confidence 467999999999999754332 2222 1111112 134466677777666654 100
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH--
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVND-- 284 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~-- 284 (337)
+- ...+.+.+ .....+|++||.|. .+-+-.-.+.++++.+ ....-+|+.|-+.|.++..
T Consensus 115 ------~~----l~~va~~l-------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~g 176 (362)
T PF03969_consen 115 ------DP----LPQVADEL-------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNG 176 (362)
T ss_pred ------cc----HHHHHHHH-------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCc
Confidence 00 01112222 23456899999994 3333344555555544 5677788888888877422
Q ss_pred --------HHHhhCCCCeEEEeCCC
Q psy3143 285 --------LVSVSLTRPVRVFVDNN 301 (337)
Q Consensus 285 --------~~~~~~~~p~~i~~~~~ 301 (337)
.+...-..-.++.++..
T Consensus 177 l~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 177 LQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred ccHHHHHHHHHHHHhceEEEEecCC
Confidence 23333345556666553
No 299
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.46 E-value=0.023 Score=49.33 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|..++|.|++|+|||...+..+...+. .+.++++++ +.+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4568899999999999977766666652 255688887 4455666666666543
No 300
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.061 Score=53.08 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=25.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
...++++||||+|+|....|. .+.+.+..-+..+.+| |.+|-+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fI-L~Ttd~~k 166 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFV-LATTDPQK 166 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEE-EEECCchh
Confidence 356899999999988755543 2333333333444444 44454433
No 301
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.037 Score=51.23 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=61.0
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCC-----eeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQN-----TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~-----~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
-.+++||.|+||+..+.. +...++.......+ +..+-+++.-..|. .+.....-.+..+......+.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~-------~i~~~~HPDl~~i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR-------RIAAGAHGGLLTLERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHH-------HHHccCCCCeEEEeccccccc
Confidence 488999999999987544 44555543322111 22333344322222 222222222222211000000
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
... ...|.|-..-.+...+.. .......+++||||+|.|.... .+.+.++++.-+..+.+|++|.
T Consensus 115 --~~~--~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 115 --KRL--RTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred --ccc--cccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEEC
Confidence 000 113444333334444433 2234678899999999886433 3444444444444444454443
No 302
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.066 Score=50.33 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
|+-+.+.||||+|||+.....+...+.... ...-.++...+.-.+ ....+..++...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~---~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~------------ 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG---ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRS------------ 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEecCCcchh--HHHHHHHHHHHcCCceec------------
Confidence 445779999999999886544333322111 112245555553221 122233344333443322
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchh-HHHH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDA-VNDL 285 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~-~~~~ 285 (337)
+.++..+...+.. +.+.++++||.+=+... ......+..+.........++++|||.... +.+.
T Consensus 254 ---------v~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ---------IKDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---------CCCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 2233333333322 45567788887632211 112333333332223344567789987544 5555
Q ss_pred HHhh
Q psy3143 286 VSVS 289 (337)
Q Consensus 286 ~~~~ 289 (337)
+..|
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 5544
No 303
>KOG0733|consensus
Probab=96.44 E-value=0.021 Score=54.97 Aligned_cols=176 Identities=15% Similarity=0.163 Sum_probs=91.1
Q ss_pred cCCccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 165 (337)
...+|.+.|--..+...|... -+.+|-.++.-.+. .-..+++|||+|+|||+.+=..+-+. + .-
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAKAVANEa---------g-~N 572 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAKAVANEA---------G-AN 572 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHHHHhhhc---------c-Cc
Confidence 346799998777777666432 33334333322221 24579999999999998652221111 0 01
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
.|-+---+|..- .||-.++-.+-+..+ -.-+.-.+|.|||
T Consensus 573 FisVKGPELlNk--------------------------------------YVGESErAVR~vFqR--AR~saPCVIFFDE 612 (802)
T KOG0733|consen 573 FISVKGPELLNK--------------------------------------YVGESERAVRQVFQR--ARASAPCVIFFDE 612 (802)
T ss_pred eEeecCHHHHHH--------------------------------------HhhhHHHHHHHHHHH--hhcCCCeEEEecc
Confidence 222222233211 122222222222211 0123446788999
Q ss_pred ccccccc-------cHHHHHHHHHHHc---CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEe
Q psy3143 246 ADRMLDE-------HFASQMKEIIRLC---SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315 (337)
Q Consensus 246 ad~l~~~-------~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~ 315 (337)
+|.|... .-...+..++--+ ....++.++.||-.+++-. |.+++-+..... .|+-+
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID--------pAiLRPGRlDk~------LyV~l 678 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID--------PAILRPGRLDKL------LYVGL 678 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc--------hhhcCCCccCce------eeecC
Confidence 9987531 1223334444333 3456788999997776432 333332222222 26666
Q ss_pred cCcchhhHHHHHHHhhhc
Q psy3143 316 SNIDEVRLYNVLGLMLLR 333 (337)
Q Consensus 316 ~~~~~~~~~~~L~~ll~~ 333 (337)
.+. .++.++|+.+.++
T Consensus 679 Pn~--~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 679 PNA--EERVAILKTITKN 694 (802)
T ss_pred CCH--HHHHHHHHHHhcc
Confidence 654 7899999988864
No 304
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.016 Score=52.64 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=26.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
....+++||||||.|... -.+.+...+..-+....++ +++.-+..
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~i-l~~n~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFI-LITNDPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEE-EEcCChhh
Confidence 467899999999988642 2344444444444444444 44443333
No 305
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.031 Score=55.07 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
...++++||||+|.|....+ +.+...+..-+....+| |.+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fI-l~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFI-FATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEE-EEeCChhh
Confidence 46789999999998764443 34444444444444444 44454433
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.11 Score=48.71 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=63.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
-++++||+|+|||+...-.+...... .+.++.++. +.|..+.. .+..++...++.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------ 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------ 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee------------
Confidence 37789999999999876555443221 133454443 33444433 333333333332211
Q ss_pred HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc-ccHHHHHHHHHHHcC---CCCeEEEEeecCch-hH
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD-EHFASQMKEIIRLCS---RTRQTMLFSATMTD-AV 282 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~-~~~~~~~~~i~~~~~---~~~q~i~~SAT~~~-~~ 282 (337)
+..+..+...+. -..+++||||=+-++.. ......+..+++... +...++++|||... ++
T Consensus 285 ---------~~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 ---------VKDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred ---------hHHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 011223333332 13467888886655422 233444555555432 22456788998887 45
Q ss_pred HHHHHhh
Q psy3143 283 NDLVSVS 289 (337)
Q Consensus 283 ~~~~~~~ 289 (337)
.+.+..|
T Consensus 350 ~~~~~~f 356 (432)
T PRK12724 350 LTVLKAY 356 (432)
T ss_pred HHHHHHh
Confidence 5555544
No 307
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.04 Score=49.92 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 112 IYPTPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
..++|+|..++..+. .|+ -.+++||.|+||+..+.. +...++.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 346788888887655 444 488999999999986644 4444544
No 308
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.37 E-value=0.01 Score=60.33 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++.+ ...+++|.|..|||||.+..-=+.+.+... ...+.++|+++-|+..|..+...+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 478999999875 357899999999999998765555554211 12346899999999999999888887653
No 309
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.36 E-value=0.014 Score=53.00 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHH-hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVA-LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
-+..|...|. +++.|...+..+ ..+++++++|+||||||... -.++..+...+ ...+++++-.+.|+
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~---~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQD---PTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcC---CCceEEEEcCCCcc
Confidence 3445555565 356677777654 45679999999999999653 44444432111 24578888888887
No 310
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.11 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=17.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 130 DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
-++++||+|+|||.++.+. ...+
T Consensus 38 a~Lf~GppGtGKTTlA~~l-A~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLI-AMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHH
Confidence 3599999999999986543 3444
No 311
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.31 E-value=0.06 Score=48.59 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCCccEEEEecccccccccHHH--HHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFAS--QMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~--~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
+.++++|||||........|.. .+..|+... .....+++.|---..++..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 4568999999998643333433 344454433 3455666655544444444
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.31 E-value=0.011 Score=50.37 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.3
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
+++++||+|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 689999999999976544
No 313
>PTZ00293 thymidine kinase; Provisional
Probab=96.31 E-value=0.029 Score=47.40 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|+=.+++||++||||.-.+-.+..... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEecc
Confidence 455688999999999765544433332 355688888863
No 314
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.30 E-value=0.053 Score=51.26 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.4
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
+++++||+|+|||..+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 38 SMILWGPPGTGKTTLARI 55 (413)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 789999999999987543
No 315
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.04 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.4
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+.++++||||+|||+...-.+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467799999999998765433
No 316
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.27 E-value=0.032 Score=56.76 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=64.1
Q ss_pred CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch------hHHHHHH
Q psy3143 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD------AVNDLVS 287 (337)
Q Consensus 214 ~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~------~~~~~~~ 287 (337)
.|+++||..|..-+.. +.+.+..+..|||||||++....-...+.++++..++..-+.+|||.+.. .+.+.++
T Consensus 9 gi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 9 GIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 7999999999766655 37889999999999999998877677777888888888889999999875 3555555
Q ss_pred hhCCCCeEEE
Q psy3143 288 VSLTRPVRVF 297 (337)
Q Consensus 288 ~~~~~p~~i~ 297 (337)
...-.-+.+.
T Consensus 88 ~L~i~~v~l~ 97 (814)
T TIGR00596 88 NLFLRHVYLW 97 (814)
T ss_pred HhCcCeEEEe
Confidence 3332334444
No 317
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.26 E-value=0.02 Score=51.91 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=42.9
Q ss_pred HHHHhCCCCCChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 104 KAIGALNYIYPTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 104 ~~l~~~~~~~p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
..+...|. .++.|...+..+. .+++++|+|+||||||... -.++..+...+ ...|++.+-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~---~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA---PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC---CCceEEEecCCcccc
Confidence 34445554 4566776666554 4569999999999999764 34455443222 245788888888873
No 318
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.027 Score=55.18 Aligned_cols=20 Identities=30% Similarity=0.208 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
-.|++||.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998876544
No 319
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.22 Score=46.21 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEE
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~ 274 (337)
....+++||||+|.|....+. .+...+...+....+|+.
T Consensus 117 ~~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA 155 (363)
T ss_pred cCCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE
Confidence 356789999999988654432 233333333444445543
No 320
>KOG0298|consensus
Probab=96.20 E-value=0.016 Score=59.92 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=85.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcC------------CCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEE
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYK------------PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------------~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~ 195 (337)
|++++..-..|.|||.+-+...+..+-.. ......+.+|||+|. ++..|++..+..-... .+++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 45678888999999998766555442100 000123568999998 4446666655554332 256666
Q ss_pred EeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC-------------CCCCCC------CccEEEEecccccccccHHH
Q psy3143 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT-------------PSFSLS------DIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------------~~~~l~------~~~~iViDEad~l~~~~~~~ 256 (337)
+.|-..........--.+|||++|...|..-+... +.++.+ .+=-|++|||+++-. + ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-s-sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-S-SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-h-HH
Confidence 65532211111122234699999999998766432 111111 122489999996543 2 23
Q ss_pred HHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
....+...++.. ...+.|.|+-..+..+.
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Iddl~ 558 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDDLF 558 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhhhH
Confidence 333444444322 34677888655555544
No 321
>KOG1016|consensus
Probab=96.18 E-value=0.15 Score=50.45 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 95 QMNLSRPLLKAIGAL---NYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 95 ~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+-|-+.+.+.++-. |+..++.-=.+.+.... +|-.+|+.-..|-|||+..+- ....+++.. ....||+|+
T Consensus 244 ~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVis-F~diflRhT---~AKtVL~iv 319 (1387)
T KOG1016|consen 244 DIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVIS-FSDIFLRHT---KAKTVLVIV 319 (1387)
T ss_pred ceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEee-hhHHHhhcC---ccceEEEEE
Confidence 344677777777543 33333332222222221 344688888999999997543 334444333 245699999
Q ss_pred CCHHHHHHHHHHHHHHhh---ccC-----cEEEEEeCCccHHHH-----HHHHhcCCCEEEECcHHHHHHHhcC------
Q psy3143 170 PTRELGVQVYQVTRQLAQ---FTS-----VEVALSVGGLEVKVQ-----ESVLRKCPDIVIATPGRLLDHLHNT------ 230 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~---~~~-----~~v~~~~~~~~~~~~-----~~~~~~~~~Ilv~Tp~~l~~~l~~~------ 230 (337)
|-..|-.+..+.=.++-+ ..+ +.|.++..+...-.+ ......+ .|++.-.+.+.-++...
T Consensus 320 PiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~G-GVlLvGYemfRLL~lk~~~~~gr 398 (1387)
T KOG1016|consen 320 PINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTG-GVLLVGYEMFRLLILKTLPKKGR 398 (1387)
T ss_pred ehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccC-CEEEehHHHHHHHHHhcccccCC
Confidence 988875544332222222 112 445555544332222 1222233 45555555443322210
Q ss_pred CCCC-----------------------------CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 231 PSFS-----------------------------LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 231 ~~~~-----------------------------l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
+... -..-++||.||-|++-... ..+...++.++..+++++....+.++
T Consensus 399 pkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~--A~iS~aLk~IrtrRRiVLTGYPLQNN 476 (1387)
T KOG1016|consen 399 PKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNIT--AEISMALKAIRTRRRIVLTGYPLQNN 476 (1387)
T ss_pred ccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccch--HHHHHHHHHhhhceeEEEeccccccc
Confidence 0000 1123799999999875332 34444555666677888888888887
Q ss_pred HHHHH
Q psy3143 282 VNDLV 286 (337)
Q Consensus 282 ~~~~~ 286 (337)
+.+..
T Consensus 477 LlEYw 481 (1387)
T KOG1016|consen 477 LLEYW 481 (1387)
T ss_pred hHHHh
Confidence 76654
No 322
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.057 Score=49.72 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=27.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+++||||||.|..... +.+..+++.-+....+|++| +-+..+
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit-~~~~~l 184 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILIS-HSSGRL 184 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEE-CChhhc
Confidence 45688999999999864443 44445555544445555554 434333
No 323
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.15 E-value=0.11 Score=48.75 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.+++++||+|+|||...-.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~ 74 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK 74 (394)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999987533
No 324
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.15 E-value=0.2 Score=46.37 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
.+++++||+|+|||...
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999765
No 325
>KOG0991|consensus
Probab=96.13 E-value=0.031 Score=47.57 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|+|||.+...
T Consensus 50 ~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILC 67 (333)
T ss_pred ceEeeCCCCCchhhHHHH
Confidence 899999999999998643
No 326
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.13 E-value=0.072 Score=50.96 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHhC------C----CCEEEEcCCCCchhHHhH-HHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALL------G----RDICGCAATGTGKTAAFM-LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~------~----~~~lv~a~TGsGKT~~~~-~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
...|+|.-++-.+.- | +..+|..|-+-|||.... +.+...+... ..+..+.|++|+.+-+.+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhHH
Confidence 357899999988771 1 257899999999997665 4333344333 3466799999999999999998
Q ss_pred HHHHhhccC-cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHh-cCCCCCCCCccEEEEecccccccccHHHHHH
Q psy3143 182 TRQLAQFTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLH-NTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259 (337)
Q Consensus 182 ~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~~~l~~~~~iViDEad~l~~~~~~~~~~ 259 (337)
++.+..... ++..+ ..-.....|.+.-....+..+. .....+=.+..+.|+||.|.....+ ..+.
T Consensus 138 ar~mv~~~~~l~~~~-----------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~ 204 (546)
T COG4626 138 ARDMVKRDDDLRDLC-----------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYS 204 (546)
T ss_pred HHHHHHhCcchhhhh-----------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHH
Confidence 888775433 11000 0000000122221111222222 2223344567899999999876653 4444
Q ss_pred HHHHHc--CCCCeEEEEee
Q psy3143 260 EIIRLC--SRTRQTMLFSA 276 (337)
Q Consensus 260 ~i~~~~--~~~~q~i~~SA 276 (337)
.+..-+ .++.+++..|.
T Consensus 205 ~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 205 EAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHhhhccCcCceEEEEec
Confidence 444333 34555555443
No 327
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.012 Score=53.86 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++|++||+|+|||..+-+
T Consensus 50 SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 50 SMILWGPPGTGKTTLARL 67 (436)
T ss_pred eeEEECCCCCCHHHHHHH
Confidence 899999999999987644
No 328
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.10 E-value=0.013 Score=52.75 Aligned_cols=60 Identities=25% Similarity=0.246 Sum_probs=44.0
Q ss_pred CCCCChHHHHHHHHHHhCCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 110 NYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|...++-|...+..+..++ +++++|.||||||+.. -++.... + ..-|+|++--|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL--Nal~~~i--~---~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL--NALSGFI--D---SDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH--HHHHhcC--C---CcccEEEEeehhhhcc
Confidence 56677899999998888877 9999999999999752 2222211 1 2338999998888843
No 329
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.044 Score=51.28 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
....+++||||+|.|..... +.+..+++.-+.. -++++++|-+..+..-+.
T Consensus 115 ~~~~kViiIDead~m~~~aa-naLLk~LEep~~~-~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERAA-NALLKAVEEPPPR-TVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcCHHHH-HHHHHHhhcCCCC-CeEEEEECChHHChHHHH
Confidence 45778999999999864432 3344444433334 445555555555544333
No 330
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.07 E-value=0.018 Score=56.37 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH-HHHHHHhhcc
Q psy3143 113 YPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY-QVTRQLAQFT 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~-~~~~~l~~~~ 189 (337)
..+|+|...+..+... +.|+++.++-+|||.+.+..+...+- . ....+|++.||.++|.... ..+..+.+.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~-~----~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID-Q----DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE-e----CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 3589999998887654 48899999999999965444433332 1 2456999999999999875 5666555443
Q ss_pred CcEEEEEeC----CccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 190 SVEVALSVG----GLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 190 ~~~v~~~~~----~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
..--..+.. ..........+.. ..+.++.. ..-..+.-..++++++||+|.+..
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~g-g~l~~~ga-------~S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPG-GFLYLVGA-------NSPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCC-CEEEEEeC-------CCCcccccCCcCEEEEechhhccc
Confidence 211111111 1111111122222 23443331 121234456789999999999853
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.07 E-value=0.058 Score=47.53 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=27.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.|.-++|+|++|+|||...+..+.+.+. .+.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEE
Confidence 4567899999999999887776666552 245688887
No 332
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.087 Score=51.34 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=24.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+++||||+|.|....+ +.+...+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 45688999999998865443 33333444444555555544
No 333
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.06 E-value=0.053 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHh----CCC-CEEEEcCCCCchhHHhHH
Q psy3143 113 YPTPIQAATIPVAL----LGR-DICGCAATGTGKTAAFML 147 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.+.+++..+. .+. .++++|++|+|||+....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 34566666665543 223 578999999999987543
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.05 E-value=0.3 Score=39.95 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=28.9
Q ss_pred CccEEEEecccccc-cccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhh
Q psy3143 237 DIEVLVLDEADRML-DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 237 ~~~~iViDEad~l~-~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
..+++|+|....+. +..+...+..+........-+++++|+...+..+....+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 46678888877542 223344444444433445556667776555544444444
No 335
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.065 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.5
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999876543
No 336
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.97 E-value=0.43 Score=43.15 Aligned_cols=39 Identities=18% Similarity=0.425 Sum_probs=24.8
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...++|||||+|.+.... ...+..++...+..+.+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 346799999999875433 344555555555566655544
No 337
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.96 E-value=0.12 Score=52.09 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=24.2
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
...++||||+|.+..... ..++..+. ..++++++||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~qQ----daLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQ----DALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHHH----HHHHHHhc-CceEEEEEecCCCh
Confidence 456899999998753221 22333333 35677778775543
No 338
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.95 E-value=0.027 Score=48.88 Aligned_cols=39 Identities=26% Similarity=0.059 Sum_probs=28.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..|.-++++|++|+|||...+..+++.+.. .+.+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEe
Confidence 356678999999999998766656665532 145688887
No 339
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.17 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 114 PTPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
+.|+|...+..+. .++ -.+++||.|.||+..+.. +...++.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC 51 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLC 51 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 3566666665543 444 588999999999976544 3344443
No 340
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.91 E-value=0.11 Score=58.04 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhH---HHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH
Q psy3143 112 IYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFM---LPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~---~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~ 178 (337)
..+++.|..|+..++.+ +-++|.|..|+|||.... -++.+.+. ..+.+++.++||...+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-----hcCCeEEEEeChHHHHHHH
Confidence 35799999999998866 456789999999998752 23333321 1356799999997776554
No 341
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.23 Score=45.27 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHh--CCC---CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 115 TPIQAATIPVAL--LGR---DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 115 ~~~Q~~~i~~~~--~~~---~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
+|||...+..+. .+| -.+++||.|+|||..+...+ ..++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a-~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA-QALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH-HHHc
Confidence 466777776665 233 57899999999998765543 3443
No 342
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.87 E-value=0.054 Score=51.62 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|.-+++.|++|+|||...+..+..... .+.+++|+.- .+-..|+...+..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3456889999999999876665554431 2557888874 344566655555443
No 343
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.87 E-value=0.027 Score=53.23 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
++.|...+..+++.. =+++.||||||||.. +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 677777777776654 467899999999987 345566653
No 344
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.80 E-value=0.049 Score=49.00 Aligned_cols=67 Identities=28% Similarity=0.331 Sum_probs=42.3
Q ss_pred HHHHHhCCCCCChHHHHHHHHHH-hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVA-LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+..|...|. +++.|...+..+ ..+++++++|+||||||... -.++..+... ....|++++-.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~---~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN---DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc---CCCceEEEECCchhhc
Confidence 444555554 344555555544 45669999999999999764 3344444221 1245788888888873
No 345
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.79 E-value=0.039 Score=45.26 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=78.7
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-+.|....|-|||.+++=-++..+ +.+.||+|+.=-+.-..+ .....+....++.+... +.......
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAa------G~G~rV~iiQFlKg~~~~--GE~~~l~~~~~v~~~~~--g~~~~~~~--- 89 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIA------GQGTPVLIVQFLKGGIQQ--GPDRPIQLGQNLDWVRC--DLPRCLDT--- 89 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHh------cCCCEEEEEEEecCCCcc--hHHHHHHhCCCcEEEEC--CCCCeeeC---
Confidence 456777899999999887777766 467889998744332100 11111111113333221 11100000
Q ss_pred hcCCC-EEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 210 RKCPD-IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 210 ~~~~~-Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
...+ .-.......+..... .+.-..+++||+||+-..++.++. ..+..+++..+...-+|+..-..|+.+.+.+
T Consensus 90 -~~~~~~~~~~~~~~~~~a~~--~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 90 -PHLDESEKKALQELWQYTQA--VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred -CCcCHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 0000 000011122332222 223456899999999988777743 4666778888888888888888888887765
Q ss_pred H
Q psy3143 287 S 287 (337)
Q Consensus 287 ~ 287 (337)
.
T Consensus 167 D 167 (178)
T PRK07414 167 D 167 (178)
T ss_pred C
Confidence 4
No 346
>KOG0737|consensus
Probab=95.75 E-value=0.13 Score=46.76 Aligned_cols=62 Identities=24% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCCCCcCCccccCCCCHHHHHHHHhCCCCCC-hHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYP-TPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p-~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|....-+|.+++=...+...|++.=.-.. +|-.-.--..+.-.+.+++.||+|+|||.++
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 4455566789999888888888765422111 1111111111223468999999999999765
No 347
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.71 E-value=0.057 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPIL 150 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l 150 (337)
|+-+.+.||||+|||+.....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34577999999999998755443
No 348
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.16 Score=50.24 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.6
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
..|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999876543
No 349
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.11 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.3
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
.+|++||.|+|||.+..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998875543
No 350
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.63 E-value=0.28 Score=43.86 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999876
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.63 E-value=0.047 Score=54.59 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=37.9
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
-++|+|.-|.+.+.-....+.++++..|.+.++++.|-+-|+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 599999999999988889999999999999999998877664
No 352
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.55 E-value=0.053 Score=49.52 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=30.4
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+..+++++|+|+||||||... -.++..+ ....|++.+--+.|+.
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~i------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREI------PAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhC------CCCCeEEEecCCCccc
Confidence 345779999999999999764 3445544 1245677776776763
No 353
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.54 E-value=0.12 Score=43.04 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++||||+|.|..... ..+...++..+... .++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~~-~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAA-NALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHHH-HHHHHHhcCCCCCe-EEEEEEC
Confidence 46788999999999865432 33333444433333 4444444
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.50 E-value=0.026 Score=51.69 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=31.0
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+..+++++|+|+||||||... -.++..+ ....+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAI------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHccc------CCCCCEEEECCCcccc
Confidence 446779999999999999764 3344433 1245688888888774
No 355
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.028 Score=55.20 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=31.1
Q ss_pred EEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 216 VIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 216 lv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
+=+-||++.+-+...+..+ -++++||+|.|.....++=-..++..+
T Consensus 400 IGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 3357999999987654433 479999999997654444444455444
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.45 E-value=0.19 Score=43.24 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=31.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|..+++.|++|+|||......+.+.+. .+..++++.. .+...++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEc-cCCHHHHHHHHHH
Confidence 4668899999999999876555554442 1345777764 3334454444443
No 357
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.096 Score=51.33 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.8
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+.++++||.|+|||..+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999998875543
No 358
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.41 E-value=0.26 Score=41.72 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|.-+.++|++|+|||...+..+.+... .+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC
Confidence 3456789999999999887766665542 24567777764
No 359
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.38 E-value=0.42 Score=45.23 Aligned_cols=86 Identities=24% Similarity=0.222 Sum_probs=42.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccH-HHH-
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV-KVQ- 205 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~-~~~- 205 (337)
-++++|++|+|||+...-.+..... + .+.+++++. +.|..+.+ .+..++...++.+.....+... ...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~-~----~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P~~i~~ 172 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKK-K----QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSPVEIAR 172 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-h----CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCHHHHHH
Confidence 4778999999999886544433211 1 133455554 34444433 2333333344544333222221 111
Q ss_pred ---HHHHhcCCC-EEEECcHHH
Q psy3143 206 ---ESVLRKCPD-IVIATPGRL 223 (337)
Q Consensus 206 ---~~~~~~~~~-Ilv~Tp~~l 223 (337)
......++| |+|=|||++
T Consensus 173 ~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 173 RALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHhcCCCEEEEeCCCcc
Confidence 112234454 778888865
No 360
>KOG0732|consensus
Probab=95.37 E-value=0.024 Score=58.17 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=78.1
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCC---CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYI---YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~---~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
...-.|.+.|....+...|+.+-.. .|.-+|.-. +.--+.++++||+|+|||+.+-..+-+ +
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~araLa~~-~----------- 323 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLMARALAAA-C----------- 323 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHHHHhhhhh-h-----------
Confidence 3445688888888888888776432 222222211 223467999999999999864221111 1
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCC---CEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP---DIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
...-++.+ .+ .+++. .--|+.+++=+.++... ..-.....+
T Consensus 324 --------------s~~~~kis--------ff------------mrkgaD~lskwvgEaERqlrllFee--A~k~qPSII 367 (1080)
T KOG0732|consen 324 --------------SRGNRKIS--------FF------------MRKGADCLSKWVGEAERQLRLLFEE--AQKTQPSII 367 (1080)
T ss_pred --------------cccccccc--------hh------------hhcCchhhccccCcHHHHHHHHHHH--HhccCceEE
Confidence 00001100 00 00111 23466776656555442 123456788
Q ss_pred EEecccccc--c-----c---cHHHHHHHHHHHcCCCCeEEEEeecCchh
Q psy3143 242 VLDEADRML--D-----E---HFASQMKEIIRLCSRTRQTMLFSATMTDA 281 (337)
Q Consensus 242 ViDEad~l~--~-----~---~~~~~~~~i~~~~~~~~q~i~~SAT~~~~ 281 (337)
.+||+|-+. . + +....+..++.-++...|+++++||..++
T Consensus 368 ffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 368 FFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred eccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 999999432 1 1 12223334445567788999999996654
No 361
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.35 E-value=0.11 Score=48.17 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=33.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|.-+++.|++|+|||...+..+..... .+.+++|+.-. +-..|+...+..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 3456889999999999876655544331 24578888754 3345655544443
No 362
>KOG0344|consensus
Probab=95.35 E-value=0.79 Score=44.12 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhc
Q psy3143 136 ATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRK 211 (337)
Q Consensus 136 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~ 211 (337)
-.++|++..-++++.+.+- .+-.|.+||-+-+.+-|.|++..+. .+.++++..++|........ ++...
T Consensus 365 lvF~gse~~K~lA~rq~v~----~g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA----SGFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred heeeecchhHHHHHHHHHh----ccCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhcc
Confidence 3577888888787777662 2246779999999999999887776 45578999999986554433 33345
Q ss_pred CCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 212 ~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
...++||| +.+.+ .++|..+.+||.+..-.- ...|.+++-+.-+..+...-+.+++-+
T Consensus 438 ~IwvLicT-----dll~R--GiDf~gvn~VInyD~p~s-~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 438 KIWVLICT-----DLLAR--GIDFKGVNLVINYDFPQS-DLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred CeeEEEeh-----hhhhc--cccccCcceEEecCCCch-hHHHHHHhhccCCCCCCcceEEEeccc
Confidence 67999999 34544 689999999999766531 123444443333333444445555554
No 363
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.29 Score=44.82 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhC--CC---CEEEEcCCCCchhHHhHHHHHHHhhcC
Q psy3143 115 TPIQAATIPVALL--GR---DICGCAATGTGKTAAFMLPILERLLYK 156 (337)
Q Consensus 115 ~~~Q~~~i~~~~~--~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~ 156 (337)
+|||...+..+.. ++ -.+++||.|.||+..+.. +...++..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC~ 48 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLCE 48 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcCC
Confidence 4667777666543 33 578999999999987644 34455443
No 364
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.32 E-value=0.23 Score=42.97 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=33.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|.-+++.|++|+|||......+...+. .+.+++++.--.. ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK------QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh------CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 457889999999999877666655542 2556777765433 34555555544
No 365
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.31 E-value=0.059 Score=50.68 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc------
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF------ 188 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~------ 188 (337)
...|.++.-..-.|+- .|.|-.|||||...+.-+.+.-.++ +.-+++|.+-|+.|+.++.+...+++..
T Consensus 164 D~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn----Pd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~p 238 (660)
T COG3972 164 DTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN----PDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQP 238 (660)
T ss_pred cchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC----CCceEEEEeehHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4456666544445555 6788999999987665554443222 3557999999999999999888877621
Q ss_pred --cCcEEEEEeCCccHHHHHHHHhcCC---CEEEEC----cHHHH-HHHhcCCCCCCCCccEEEEecccccccccHHHHH
Q psy3143 189 --TSVEVALSVGGLEVKVQESVLRKCP---DIVIAT----PGRLL-DHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQM 258 (337)
Q Consensus 189 --~~~~v~~~~~~~~~~~~~~~~~~~~---~Ilv~T----p~~l~-~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~ 258 (337)
...-++.-+||.............+ .+-++- -..+. .++.. .-+..-+++|.|||++... ++|...+
T Consensus 239 dW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~--~~~~~~yD~ilIDE~QDFP-~~F~~Lc 315 (660)
T COG3972 239 DWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD--INNKKAYDYILIDESQDFP-QSFIDLC 315 (660)
T ss_pred CccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh--hhccccccEEEecccccCC-HHHHHHH
Confidence 1133444556654433332222111 111111 01111 22221 1226678999999999753 4555555
Q ss_pred HHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 259 KEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 259 ~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
..+.+ ...+++. | -++++++...-|+.|.-++-
T Consensus 316 f~~tk---d~Krlvy--A--yDelQnls~~~m~ppe~iFg 348 (660)
T COG3972 316 FMVTK---DKKRLVY--A--YDELQNLSNVKMRPPEEIFG 348 (660)
T ss_pred HHHhc---CcceEEE--e--hHhhhcccccCCCCHHHhcC
Confidence 44433 2222222 1 25555555555555555543
No 366
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.12 Score=50.18 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+++||||||.|....+ ..+...+...+..+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~-NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAF-NALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHHhhcCCceEEEEEE
Confidence 46789999999998865443 34444555555566666544
No 367
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.7 Score=44.60 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++||||||.|....+ +.+...+...+ ...++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp-~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPP-PRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCC-CCeEEEEEEC
Confidence 46789999999998764443 23333333323 3334444444
No 368
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.28 E-value=0.33 Score=44.65 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-H---HHHHHHhhc-cCcEEEEEeCCccHHHHH
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-Y---QVTRQLAQF-TSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~---~~~~~l~~~-~~~~v~~~~~~~~~~~~~ 206 (337)
++.++.|+|||.+....++..++..+. ...++++ ||..-+... . ..+..+... ............-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI----- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE-----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE-----
Confidence 578899999999988877777764432 2345555 666554442 2 233333322 1222211111100
Q ss_pred HHHhcCCCEEEECcHH--HHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc--hhH
Q psy3143 207 SVLRKCPDIVIATPGR--LLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT--DAV 282 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~--l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~--~~~ 282 (337)
.+.++..|.+.+-+. -...+.. ..+.++++||+-.+.+..+...+............ +++|.|.. ..+
T Consensus 72 -~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 72 -ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGWF 143 (384)
T ss_dssp -EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSHH
T ss_pred -EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCce
Confidence 013444566666321 1111111 45789999999887666665555544443332222 24454433 335
Q ss_pred HHHHHhhCCCC
Q psy3143 283 NDLVSVSLTRP 293 (337)
Q Consensus 283 ~~~~~~~~~~p 293 (337)
..+......+.
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55666555544
No 369
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.27 Score=44.99 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 115 TPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 115 ~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
+|||...+..+. .|| -.+++||.|+||+..+... ...++.
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~-A~~LlC 50 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL-SRWLMC 50 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH-HHHHcC
Confidence 456666665543 444 5779999999999876543 444443
No 370
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.28 E-value=0.38 Score=48.93 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=26.0
Q ss_pred cEEEEecccccccccH----HHHHHHHHHHcCCCCeEEEEeecCchhHH
Q psy3143 239 EVLVLDEADRMLDEHF----ASQMKEIIRLCSRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 239 ~~iViDEad~l~~~~~----~~~~~~i~~~~~~~~q~i~~SAT~~~~~~ 283 (337)
.+|+|||+|.+...+- ...+..+++.+-...++.++.||-+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 4899999999865331 12233334333234456666777666643
No 371
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.26 E-value=0.13 Score=49.59 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.++++||+|+|||+..
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 468999999999999864
No 372
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.23 E-value=0.12 Score=44.28 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|.-+.+.|++|+|||...+..+...+......+.+.+++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456789999999999877665555442221112236788887643
No 373
>PRK04328 hypothetical protein; Provisional
Probab=95.21 E-value=0.19 Score=43.95 Aligned_cols=53 Identities=21% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|..+++.|++|+|||...+..+.+.+. .+.+++|+. +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567889999999999877666666552 244577776 4444555655555543
No 374
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.20 E-value=0.42 Score=43.05 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.+++++||+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999997654
No 375
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.15 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=16.9
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
+.+|++||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 467999999999998865543
No 376
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.18 E-value=0.023 Score=49.98 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHhCCC----CEE-EEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 121 TIPVALLGR----DIC-GCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 121 ~i~~~~~~~----~~l-v~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+..++.|. .+. ++|++|||||-..+..++...+.....+.+.+++||--....
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 455566552 343 899999999977666555555443334457789999755443
No 377
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.16 E-value=0.018 Score=53.82 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=37.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
++++.|+||||||.++++|.+... +..+||+=|.-++........+.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988866432 356999999999987766655543
No 378
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=1.7 Score=43.86 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=16.1
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
-.|++||.|+|||.++.+.+
T Consensus 42 AYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 35899999999998875543
No 379
>PRK05973 replicative DNA helicase; Provisional
Probab=95.09 E-value=0.081 Score=45.75 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.++|.. +...-+..|.-++|.|++|+|||...+..+.+.+. .+.+++|++-- +-..|+...+..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 345522 23344556678899999999999887776666652 24467777532 2245666666554
No 380
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.08 E-value=0.18 Score=48.64 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.-+++.||+|+|||+..+..+...+. .+.+++|++ ..+-..|+...+..++
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACA------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 46899999999999987777666652 355788877 5566677777776654
No 381
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.07 E-value=0.073 Score=49.30 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+..++++||||||||... ..++..+.... ...+++.+--..|+
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~---~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETY---PDRKIVTYEDPIEY 191 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcC---CCceEEEEecCchh
Confidence 3457899999999999764 44555553221 12345555444343
No 382
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.05 E-value=0.035 Score=47.86 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q psy3143 131 ICGCAATGTGKTAAF 145 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~ 145 (337)
++|.|+.|||||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 479999999999853
No 383
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.05 E-value=0.063 Score=47.52 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=30.1
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
..+.+++++|+||||||... -.++..+-.. ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-----ccceEEeccccce
Confidence 45679999999999999875 4445555211 3578888877776
No 384
>PHA00729 NTP-binding motif containing protein
Probab=95.04 E-value=0.47 Score=40.64 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=37.4
Q ss_pred CEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccc-cHHH----HHHHHHHHcCCCCeEEEEeecCchhHHHHHHh
Q psy3143 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFAS----QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288 (337)
Q Consensus 214 ~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~----~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 288 (337)
..++.+...|+..+... .-....++++|||++=.-+.. .|.. ....+...+...++++.+...-+.++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a-~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDA-IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHH-HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555555565555321 111234578999994322211 1221 11223333343566777777766777666654
No 385
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.01 E-value=0.049 Score=45.06 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcC-CCCeEEEEee
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQTMLFSA 276 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~-~~~q~i~~SA 276 (337)
..-+++++||...-++......+..++..+. ...++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 5568999999999888776666666655543 3356665554
No 386
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.00 E-value=0.037 Score=45.80 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=26.7
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
+-.++++++.|++|+|||..+...+.+.+ . .+..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~-~-----~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI-R-----KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH-H-----TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc-c-----CCcceeEe-ecCceecc
Confidence 44678999999999999987654443333 2 24456665 44455444
No 387
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.00 E-value=0.25 Score=50.66 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+..++++||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 388
>KOG0742|consensus
Probab=94.99 E-value=0.05 Score=50.04 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+|+++.||+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999653
No 389
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=1 Score=43.10 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=16.2
Q ss_pred CEEEEcCCCCchhHHhHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~ 149 (337)
..+++||+|+|||.++...+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998865543
No 390
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.27 Score=44.64 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=33.3
Q ss_pred EEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 215 IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 215 Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
|-|-....+.+.+... ......+++|||+||.|.... .+.+.+++..-+ +..+|+.|.
T Consensus 104 I~id~ir~i~~~l~~~--p~~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRP--PLEAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccC--cccCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 4444444555555442 224678999999999986443 344444555444 554444443
No 391
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.96 E-value=0.25 Score=46.27 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+.++++||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999764
No 392
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.7 Score=42.07 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHh----CCC---CEEEEcCCCCchhHHhHHHHHHHhhc
Q psy3143 115 TPIQAATIPVAL----LGR---DICGCAATGTGKTAAFMLPILERLLY 155 (337)
Q Consensus 115 ~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~ 155 (337)
.|||...+..+. .|+ -.+++||.|.||+..+...+ ..++.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A-~~llC 50 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA-QWLMC 50 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH-HHHcC
Confidence 455665555443 444 56799999999998765433 44443
No 393
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.81 E-value=0.18 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.1
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
+.+-.+.|++..||+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556677899999999999996664
No 394
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.78 E-value=0.087 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.-++|+||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4568999999999999864 3455554
No 395
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.76 E-value=0.22 Score=50.81 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=29.0
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|++++-....++.+..+ .+..|..++... +..++.++++||+|+|||...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 4566666555555444332 122222222211 124578999999999999764
No 396
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.76 E-value=0.52 Score=48.03 Aligned_cols=19 Identities=26% Similarity=0.114 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.++++.||+|+|||...-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 3899999999999987544
No 397
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.75 E-value=1.1 Score=40.73 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCccEEEEeccccccc-ccHHHHHHHHHHHc------CCCCeEEEEeecCchhHHHHHHhh
Q psy3143 236 SDIEVLVLDEADRMLD-EHFASQMKEIIRLC------SRTRQTMLFSATMTDAVNDLVSVS 289 (337)
Q Consensus 236 ~~~~~iViDEad~l~~-~~~~~~~~~i~~~~------~~~~q~i~~SAT~~~~~~~~~~~~ 289 (337)
.++++||||=+-++.. ......+..+.+.+ .+...++.++||...+....+..|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4467788877766542 23344555544432 233346777888665433334444
No 398
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.74 E-value=0.33 Score=49.54 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++.||+|+|||+.+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999765
No 399
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.73 E-value=0.042 Score=52.86 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=39.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.++++.||||||||..+++|.+-.. +.-+||+=|-.+|.......++..+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~--------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY--------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc--------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976331 2258888899999887776666544
No 400
>KOG0738|consensus
Probab=94.73 E-value=0.21 Score=45.75 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=34.1
Q ss_pred cCCccccCCCCHHHHHHHHhCC-CCCC-------------hH-HHHHH-H----HHHhCC-----CCEEEEcCCCCchhH
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALN-YIYP-------------TP-IQAAT-I----PVALLG-----RDICGCAATGTGKTA 143 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~-~~~p-------------~~-~Q~~~-i----~~~~~~-----~~~lv~a~TGsGKT~ 143 (337)
....|..++....|++.|..-= -..| -. ++..+ + |...+| +.++..||+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 4457888888888888875421 1111 11 12221 1 233344 479999999999997
Q ss_pred Hh
Q psy3143 144 AF 145 (337)
Q Consensus 144 ~~ 145 (337)
.+
T Consensus 261 LA 262 (491)
T KOG0738|consen 261 LA 262 (491)
T ss_pred HH
Confidence 53
No 401
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.72 E-value=1.1 Score=46.85 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhh--cCCC-------------------------CCCCeeEEEEcC
Q psy3143 118 QAATIPVALLGRDICGCAATGTGKTAAFMLPILERLL--YKPR-------------------------DDQNTRVLVLVP 170 (337)
Q Consensus 118 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~--~~~~-------------------------~~~~~~~lil~P 170 (337)
|++.+..+...-||+--..|--=+|+-..+.-+.-+. ..++ -.+++++.||.|
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~N 811 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHN 811 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEec
Confidence 6666666666667777777777777654333222210 0010 035789999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
..+-..++...++.+.. ..+|++.+|........ .++.+.+||+|||. .+.+ .++..+...|||+-|
T Consensus 812 rV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEt--GIDIPnANTiIIe~A 882 (1139)
T COG1197 812 RVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIET--GIDIPNANTIIIERA 882 (1139)
T ss_pred chhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeec--CcCCCCCceEEEecc
Confidence 99999999999998764 57899999998766554 45567899999994 3444 788999999999999
Q ss_pred cccccccHHHHHHHHHHHc
Q psy3143 247 DRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~ 265 (337)
|++. ..++..+....
T Consensus 883 D~fG----LsQLyQLRGRV 897 (1139)
T COG1197 883 DKFG----LAQLYQLRGRV 897 (1139)
T ss_pred cccc----HHHHHHhcccc
Confidence 9864 34455554444
No 402
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.72 E-value=0.43 Score=49.87 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=35.2
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
-+||||++|.+.+......+..+++..+....+|+.|-+.++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 589999999987677777899999999988899888877544
No 403
>KOG0744|consensus
Probab=94.68 E-value=0.34 Score=43.44 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=63.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH-----------HHHHHHHHHHHHHhhccCcEEEEE
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR-----------ELGVQVYQVTRQLAQFTSVEVALS 196 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~-----------~La~q~~~~~~~l~~~~~~~v~~~ 196 (337)
+|-++++||+|+|||.. .-++.+++--+..+....-.+|=.... -|+.++++.+.++...-+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45688999999999964 345566664333332223344444444 356666777777776655555555
Q ss_pred eCCc---------------c---------HHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 197 VGGL---------------E---------VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 197 ~~~~---------------~---------~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+... . .-.|...+++.++++|-|...|.+ +++.-.+|-||-..
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi~~ 322 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADIVF 322 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhhee
Confidence 4321 1 011234455667777776554444 34556677788543
No 404
>PRK10436 hypothetical protein; Provisional
Probab=94.68 E-value=0.16 Score=48.44 Aligned_cols=38 Identities=37% Similarity=0.388 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.|...+..++ .+.-++++||||||||... ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 344555555444 3446889999999999864 3455554
No 405
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.23 Score=46.28 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=32.1
Q ss_pred CccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhHH
Q psy3143 237 DIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAVN 283 (337)
Q Consensus 237 ~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~ 283 (337)
++++++||.++.+... .+...+..++..+ ..+.|+++.|...|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6899999999987654 3444455555444 334488888877777755
No 406
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.61 E-value=0.36 Score=41.37 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|.-+++.|++|+|||...+..+...+. .+.+++++... +-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 3557889999999999876655555542 24567777654 3456666665554
No 407
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.60 E-value=1 Score=40.62 Aligned_cols=129 Identities=19% Similarity=0.301 Sum_probs=69.2
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
++++|-+|+|||+...-.+ +++. ..+.++++.+ -.|+-|.. .+..+++..++.+.....|.
T Consensus 142 il~vGVNG~GKTTTIaKLA-~~l~-----~~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~-------- 204 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLA-KYLK-----QQGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGA-------- 204 (340)
T ss_pred EEEEecCCCchHhHHHHHH-HHHH-----HCCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCC--------
Confidence 6789999999998854322 2332 1355666665 23444433 23333344456654421111
Q ss_pred HhcCCCEEEECcHHH-HHHHhcCCCCCCCCccEEEEecccccccc-cHHHHHHHHHHHcCCCC------eEEEEeecCch
Q psy3143 209 LRKCPDIVIATPGRL-LDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCSRTR------QTMLFSATMTD 280 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l-~~~l~~~~~~~l~~~~~iViDEad~l~~~-~~~~~~~~i~~~~~~~~------q~i~~SAT~~~ 280 (337)
-|..+ .+.++.. .-+.+++|++|=|=+|... +....+..|.+.+.+.. -++.+=||...
T Consensus 205 ----------DpAaVafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 205 ----------DPAAVAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred ----------CcHHHHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 11111 1122211 1345677778877777654 46677777777665443 33444888887
Q ss_pred hHHHHHHhh
Q psy3143 281 AVNDLVSVS 289 (337)
Q Consensus 281 ~~~~~~~~~ 289 (337)
+-.+-++.|
T Consensus 272 nal~QAk~F 280 (340)
T COG0552 272 NALSQAKIF 280 (340)
T ss_pred hHHHHHHHH
Confidence 755545443
No 408
>KOG0741|consensus
Probab=94.57 E-value=0.48 Score=45.28 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHhCCCCCChHHHHHHHHH-------HhC-----CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCC
Q psy3143 95 QMNLSRPLLKAIGALNYIYPTPIQAATIPV-------ALL-----GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN 162 (337)
Q Consensus 95 ~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-------~~~-----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 162 (337)
.+|.+++-++.+...|.-.-.+--.+.+.. +.. -..+++.||.|||||..+.-.++.. .-
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S--------~F 564 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS--------DF 564 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc--------CC
Confidence 367888888888777654333332333221 111 1268999999999997654333221 24
Q ss_pred eeEEEEcCC
Q psy3143 163 TRVLVLVPT 171 (337)
Q Consensus 163 ~~~lil~Pt 171 (337)
|.+=|+.|.
T Consensus 565 PFvKiiSpe 573 (744)
T KOG0741|consen 565 PFVKIISPE 573 (744)
T ss_pred CeEEEeChH
Confidence 556666664
No 409
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.37 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.9
Q ss_pred CEEEEcCCCCchhHHhHHH
Q psy3143 130 DICGCAATGTGKTAAFMLP 148 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~ 148 (337)
-.+++||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999887553
No 410
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.47 E-value=0.15 Score=50.27 Aligned_cols=44 Identities=30% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHhCCCCCChHHHHHHHHHHhC--CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 106 IGALNYIYPTPIQAATIPVALL--GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 106 l~~~~~~~p~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
|..+|+ .+.|.+.+..++. +.-++++||||||||+.. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 444554 4556666665544 346789999999999874 4455555
No 411
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.44 E-value=0.75 Score=45.76 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCc
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 279 (337)
+...+++||||||.|....+ ..+...+...+... +++|.+|-.
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~-naLLK~LEepp~~t-ifIL~tt~~ 161 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAF-NAFLKTLEEPPSYA-IFILATTEK 161 (614)
T ss_pred cCCcEEEEEECcccCCHHHH-HHHHHHHhCCCCCe-EEEEEeCCc
Confidence 56789999999999864332 33444444433333 455555533
No 412
>PRK09087 hypothetical protein; Validated
Probab=94.39 E-value=0.25 Score=42.58 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++.++++|++|||||....
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4458999999999997544
No 413
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.38 E-value=0.057 Score=53.19 Aligned_cols=50 Identities=22% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
+++++.||||||||..+++|.+-.. +.-+||+=|--|+........++++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4799999999999999999987653 3458999999999887777666543
No 414
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.33 E-value=0.24 Score=51.48 Aligned_cols=79 Identities=13% Similarity=0.255 Sum_probs=62.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+++++|++|+++-+..++..++.+. .+.++..++|+........ +.....+|+|||. .+.. .+++.+
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~--GIDIp~ 730 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIET--GIDIPN 730 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--cccccc
Confidence 5689999999998888888888753 3578999999987655443 3346689999994 3433 789999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
+++||+..+++.
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999999874
No 415
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=1.6 Score=40.55 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.2
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 130 DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.++++||+|+|||...... ...+
T Consensus 41 ~~L~~G~~G~GKt~~a~~l-a~~l 63 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL-ARKI 63 (367)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHh
Confidence 6889999999999765443 4444
No 416
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.29 E-value=0.28 Score=52.15 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=61.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+++++|++|+++-+..+.+.+.... .+.++..++|+.+...... +..+..+|+|||. .+.+ .+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iier--GIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET--GIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhc--cccccc
Confidence 5689999999998888888887754 3467888999987665433 3446789999994 3333 789999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
+++||++.+|++
T Consensus 880 v~~VIi~~ad~f 891 (1147)
T PRK10689 880 ANTIIIERADHF 891 (1147)
T ss_pred CCEEEEecCCCC
Confidence 999999999864
No 417
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.27 E-value=0.43 Score=43.36 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|+-+.+.||+|||||...+..+.+... .+.+++++.+-..+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCCEEEECccccHHH
Confidence 3557889999999999887766665542 3567898887655543
No 418
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.27 E-value=1.6 Score=42.30 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=31.6
Q ss_pred cCCccccCCCCHHHHHHHHhC--CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 89 ENSSFHQMNLSRPLLKAIGAL--NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~--~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
...+|.++.-.+.+...+... -+..|..++... ....+.++++||+|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 345788887666665554321 122233232211 112357999999999999764
No 419
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.24 E-value=0.96 Score=44.15 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh-ccCcE-EEEEeCCccHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVE-VALSVGGLEVKVQ 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~-~~~~~-v~~~~~~~~~~~~ 205 (337)
.|-.+.--|--.|||+. +.|++..++.. ..+.++.|++.-+-.++-+++.+...+. ..+-+ +...-+
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s---~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKN---IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD------- 270 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHh---hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-------
Confidence 45677788999999974 67777777643 3477899999999888887776654332 22211 111111
Q ss_pred HHHHhcCCCEEEECcHHHHHH----HhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecC
Q psy3143 206 ESVLRKCPDIVIATPGRLLDH----LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATM 278 (337)
Q Consensus 206 ~~~~~~~~~Ilv~Tp~~l~~~----l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~ 278 (337)
-.|.+.-||.=... -.+...+.=.++.++++||||-+-. ..+..|+..+ ..++++|..|.|-
T Consensus 271 -------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 -------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred -------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCC
Confidence 12333333221000 1122344456789999999996643 2334444433 4567788888774
No 420
>CHL00176 ftsH cell division protein; Validated
Probab=94.23 E-value=2.1 Score=42.75 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++.||+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999865
No 421
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.15 E-value=0.29 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=16.8
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 130 DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.++++||+|+|||..... +...+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Confidence 578999999999976533 34444
No 422
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.12 E-value=2 Score=39.12 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 208 (337)
+.+.++|+.|.|||...-. .++.+ ....-.-++....+..+++.+..+. |..
T Consensus 66 ~GlYl~GgVGrGKT~LMD~-Fy~~l--------p~~~k~R~HFh~FM~~vH~~l~~l~-----------g~~-------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDL-FYESL--------PGERKRRLHFHRFMARVHQRLHTLQ-----------GQT-------- 117 (367)
T ss_pred ceEEEECCCCccHHHHHHH-HHhhC--------CccccccccHHHHHHHHHHHHHHHc-----------CCC--------
Confidence 5688999999999975322 22222 1111223456677777777777654 110
Q ss_pred HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH---
Q psy3143 209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVND--- 284 (337)
Q Consensus 209 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~--- 284 (337)
|.+ | .+..-+ ..+.++++|||.+. .+-+=.-.+.++++.+ .+++.+++.|.|.|+++-.
T Consensus 118 -----dpl---~-~iA~~~-------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGl 180 (367)
T COG1485 118 -----DPL---P-PIADEL-------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGL 180 (367)
T ss_pred -----Ccc---H-HHHHHH-------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccch
Confidence 111 0 111111 34568999999984 3333334455555443 6688899999999987532
Q ss_pred -------HHHhhCCCCeEEEeCCC-ccccCCeeEEEEEecCcc
Q psy3143 285 -------LVSVSLTRPVRVFVDNN-HEVALNLRQEFVSFSNID 319 (337)
Q Consensus 285 -------~~~~~~~~p~~i~~~~~-~~~~~~i~q~~~~~~~~~ 319 (337)
.+...-..-.++.++.. ........|--+++.+.+
T Consensus 181 qR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl~ 223 (367)
T COG1485 181 QRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPLD 223 (367)
T ss_pred hHHhhHHHHHHHHHheEEEEecCCccccccccccCceeecCCc
Confidence 12222245667777665 333344444333334433
No 423
>KOG2004|consensus
Probab=94.11 E-value=0.18 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=24.2
Q ss_pred EEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 215 IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 215 Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
-+=+-||++.+.+..-+.-+ -++.|||+|.+..
T Consensus 487 YVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~ 519 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGS 519 (906)
T ss_pred eeccCChHHHHHHHhhCCCC----ceEEeehhhhhCC
Confidence 34467999999997643222 4789999999873
No 424
>KOG0060|consensus
Probab=94.07 E-value=0.034 Score=53.27 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=42.2
Q ss_pred EECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHH
Q psy3143 217 IATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVS 287 (337)
Q Consensus 217 v~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 287 (337)
|-+||-..++-.. .+...+-++.|+|||-.-++......+.++.+... +-++|-.....+..+..
T Consensus 570 vLS~GEqQRLa~A--RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 570 VLSPGEQQRLAFA--RLFYHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWKFHD 634 (659)
T ss_pred hcCHHHHHHHHHH--HHHhcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHhhhh
Confidence 4566655544332 23356778999999998888777777777777654 44556666666555443
No 425
>KOG2028|consensus
Probab=94.05 E-value=0.35 Score=44.11 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=28.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
.+|++||+|+|||..+-+.+.. ......+.+=+..|.+-...+...+.
T Consensus 164 SmIlWGppG~GKTtlArlia~t------sk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST------SKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh------cCCCceEEEEEeccccchHHHHHHHH
Confidence 7999999999999765432221 11223456666666555544444333
No 426
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.04 E-value=0.72 Score=47.85 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=26.6
Q ss_pred ccEEEEecccccccccH---HHHHHHHHHHcCCCCeEEEEeecCchhHHH
Q psy3143 238 IEVLVLDEADRMLDEHF---ASQMKEIIRLCSRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 238 ~~~iViDEad~l~~~~~---~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~ 284 (337)
-.+|+|||+|.+...+. ......+++..-....+.++.||-.++...
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 45899999999874221 112223333222344566677776666544
No 427
>PRK09354 recA recombinase A; Provisional
Probab=93.99 E-value=0.5 Score=43.32 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
.|+-+.|.||+|||||...+..+.+... .+.+++|+-.-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchHH
Confidence 3557789999999999988776666542 3667888887665543
No 428
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.99 E-value=0.21 Score=44.09 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhC--CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVALL--GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+.|.+.+..++. +..++++|+||||||... ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 3445555554443 336889999999999865 3344444
No 429
>PHA00350 putative assembly protein
Probab=93.97 E-value=0.29 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhHHhHHH-HHHHh
Q psy3143 131 ICGCAATGTGKTAAFMLP-ILERL 153 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~-~l~~l 153 (337)
.++.|.+|||||+..+.. ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 478999999999987653 44444
No 430
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.97 E-value=0.19 Score=51.86 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHh----CC--CCEEEEcCCCCchhHHhHH
Q psy3143 114 PTPIQAATIPVAL----LG--RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 114 p~~~Q~~~i~~~~----~~--~~~lv~a~TGsGKT~~~~~ 147 (337)
|---|...+..++ .+ .++++.||+|+|||...-.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 3333555554443 32 3899999999999987543
No 431
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.97 E-value=0.2 Score=44.10 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.6
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 789999999999986654
No 432
>PRK07413 hypothetical protein; Validated
Probab=93.93 E-value=0.18 Score=46.58 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=76.6
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCe------eEEEEcCCHHH---HHHHHHHHHHHhhc-cC-cEEEEEeC
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNT------RVLVLVPTREL---GVQVYQVTRQLAQF-TS-VEVALSVG 198 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~------~~lil~Pt~~L---a~q~~~~~~~l~~~-~~-~~v~~~~~ 198 (337)
.+.|....|-|||.+++=-++..+ +.+. +|+|+.=-+.- .++ ..+..+... .+ +.+. .+|
T Consensus 202 ~i~VYTG~GKGKTTAAlGlAlRA~------G~G~~~~~~~rV~ivQFlKg~~~~GE~--~~l~~l~~~~~~~v~~~-~~g 272 (382)
T PRK07413 202 GIEIYTGEGKGKSTSALGKALQAI------GRGISQDKSHRVLILQWLKGGSGYTED--AAIAALRESYPHLVDHL-RSG 272 (382)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHh------cCCCCcccCceEEEEEECCCCCChHHH--HHHHHhhhhCCCcEEEE-Ecc
Confidence 467778899999999887777766 2343 78888744432 111 122222110 11 2211 111
Q ss_pred Cc--cHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH--HHHHHHHHcCCCCeEEEE
Q psy3143 199 GL--EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS--QMKEIIRLCSRTRQTMLF 274 (337)
Q Consensus 199 ~~--~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~--~~~~i~~~~~~~~q~i~~ 274 (337)
.. ....+ +...-.......+..... .+.-..+++||+||+-..+..++.+ .+..+++..|...-+|+.
T Consensus 273 ~~~~~~~~~------~~~~~~~~a~~~~~~a~~--~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLT 344 (382)
T PRK07413 273 RDAIVWRGQ------QQPIDYVEAERAWEIARA--AIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIIT 344 (382)
T ss_pred CCCceeecC------ChHHHHHHHHHHHHHHHH--HHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEe
Confidence 11 00000 000000011233433332 2333568999999999888777543 666777777777777766
Q ss_pred eec-CchhHHHHHH
Q psy3143 275 SAT-MTDAVNDLVS 287 (337)
Q Consensus 275 SAT-~~~~~~~~~~ 287 (337)
.-. .|+.+.+++.
T Consensus 345 GR~~ap~~lie~AD 358 (382)
T PRK07413 345 GRCKNQPAYFDLAS 358 (382)
T ss_pred CCCCCCHHHHHhCc
Confidence 665 7788877664
No 433
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.93 E-value=0.23 Score=47.85 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+-|.+.+..++..+ -++++||||||||... ..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 455666666655433 4689999999999874 3345544
No 434
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.81 E-value=0.26 Score=42.22 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=26.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
|.-+.+.|++|+|||...+..+.+.+. .+.+++++.--
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~------~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEECC
Confidence 456789999999999887666665542 24567777543
No 435
>KOG1133|consensus
Probab=93.75 E-value=0.11 Score=50.82 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 113 YPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 113 ~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
+|+.||.+.+..+ -.|+--|+.+|||+|||+..+=.++.+|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 5788998887654 4688889999999999998766666665
No 436
>KOG2035|consensus
Probab=93.71 E-value=1.6 Score=38.51 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=48.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEE
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~ 314 (337)
-..++++||-|||.+... -...+++-+......+++|+.--..++-+.-+-. +=.+++
T Consensus 125 qr~fKvvvi~ead~LT~d-AQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrS---------------------RCl~iR 182 (351)
T KOG2035|consen 125 QRPFKVVVINEADELTRD-AQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRS---------------------RCLFIR 182 (351)
T ss_pred ccceEEEEEechHhhhHH-HHHHHHHHHHHHhcCceEEEEecCcccchhHHhh---------------------heeEEe
Confidence 346899999999987533 3456666666777788888776655543333222 223455
Q ss_pred ecCcchhhHHHHHHHhhhcC
Q psy3143 315 FSNIDEVRLYNVLGLMLLRE 334 (337)
Q Consensus 315 ~~~~~~~~~~~~L~~ll~~~ 334 (337)
|..-.+.+-..+|..++.++
T Consensus 183 vpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 183 VPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 55555566666666666544
No 437
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.69 E-value=0.18 Score=46.12 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
++++++||+|+|||.....
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4799999999999987643
No 438
>PF12846 AAA_10: AAA-like domain
Probab=93.65 E-value=0.12 Score=46.24 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.4
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
+++++|.|+||||||......+.+.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 36899999999999988764443333
No 439
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.65 E-value=0.21 Score=45.81 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
+..|...|+. ++.+...+..+. .+++++++|+||||||... -.++..+ + ...+++++--+.||
T Consensus 154 l~~l~~~g~~--~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i---~---~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGTF--PPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV---A---PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC---C---CCCcEEEECCccee
Confidence 4555556653 456666666554 4569999999999999754 2233333 1 23467777777776
No 440
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.59 E-value=0.53 Score=40.07 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=26.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
|.-+++.|++|+|||...+..+.+... .+.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~------~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG------QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEE
Confidence 456789999999999887666655541 255788874
No 441
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.57 E-value=0.81 Score=45.19 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=27.6
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+++-.++|+|||-.-+|..-...+...+..+.+++.+++.+-
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaH 522 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEec
Confidence 455588999999988877766666666655444544444333
No 442
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.53 E-value=1 Score=42.71 Aligned_cols=40 Identities=23% Similarity=0.108 Sum_probs=26.1
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
+..|.-+++.|+||+|||...+-.+.+.... .+..++++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~-----~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR-----EGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEE
Confidence 3345567899999999998765555444321 244577775
No 443
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.45 E-value=0.074 Score=53.06 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=37.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+++++.||||||||..+++|.+-.. +..+||+=|--|+........+.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~--------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF--------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC--------CCCEEEEeCCchHHHHHHHHHHh
Confidence 4899999999999999999976543 33588888888887766555544
No 444
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.43 E-value=0.96 Score=44.22 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|+-+.+.||+|||||+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLL 378 (529)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
No 445
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.40 E-value=0.3 Score=44.23 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=37.2
Q ss_pred CChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 113 YPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 113 ~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+++.|..-+.. +..++++++||+||||||.. +.+++..+ ....|++.+=-|.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I------p~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI------PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC------CchhcEEEEeccccc
Confidence 445666555554 45677999999999999975 34455444 134567777777665
No 446
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.38 E-value=0.25 Score=45.40 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=26.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
.+..++++||||||||+.. ..++..+.. ..+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~----~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK----NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc----CCCCEEEEEcCChhh
Confidence 3567899999999999875 334444421 123456666554444
No 447
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.37 E-value=0.28 Score=44.43 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=34.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH-HHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL-GVQVYQVTRQ 184 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L-a~q~~~~~~~ 184 (337)
.-+.++|++|+|||...+..++...+.....+.+.+++|+.--..+ ..++.+.+..
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4567999999999987766665544322222335689999744332 3444444433
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.33 E-value=0.44 Score=45.54 Aligned_cols=52 Identities=19% Similarity=0.113 Sum_probs=34.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.|.-+++.|++|+|||...+..+.+... .+.+++|+..- +-..|+...+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAK------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 3457889999999999887665544431 23568888754 4445665544443
No 449
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.33 E-value=0.24 Score=49.88 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+++-|.+++... ...++|.|..|||||.+..-=+.+.+.. ......+++.++=|+-.|..+...+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~--~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA--GGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc--CCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4688899998764 6789999999999999876655555532 122345699999999999999988888775
No 450
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.28 E-value=1.3 Score=45.50 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=21.3
Q ss_pred ECcHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy3143 218 ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252 (337)
Q Consensus 218 ~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~ 252 (337)
+.||++...+...+. .-.++++||+|.+...
T Consensus 401 ~~~G~~~~~l~~~~~----~~~villDEidk~~~~ 431 (784)
T PRK10787 401 SMPGKLIQKMAKVGV----KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCCcHHHHHHHhcCC----CCCEEEEEChhhcccc
Confidence 368888877765321 1247999999998754
No 451
>PRK06904 replicative DNA helicase; Validated
Probab=93.22 E-value=1.8 Score=41.60 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=69.4
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEE-eC-CccH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VG-GLEV 202 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~-~~-~~~~ 202 (337)
+..|.=+++.|.||.|||...+-.+.+.... .+..++|.+. -.-..|+..++..... ++....+ .| ....
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~-----~g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l~~ 289 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA-----SEKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNLDQ 289 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCCCH
Confidence 3344567789999999998654333333321 1334666643 2334555444433222 2221111 22 1222
Q ss_pred HHH------HHHHhcCCCEEEE-----CcHHHHHHHhcCCCCCCCCccEEEEeccccccccc----HHHHHHHHHHHc--
Q psy3143 203 KVQ------ESVLRKCPDIVIA-----TPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH----FASQMKEIIRLC-- 265 (337)
Q Consensus 203 ~~~------~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~----~~~~~~~i~~~~-- 265 (337)
..+ ...+...+.+.|. |+..+...+... ......+++||||=.+.|...+ ....+..|.+.+
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~-~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~ 368 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRV-YRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKA 368 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH-HHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 111 1222233446653 444444333221 0012357899999998775322 122333333222
Q ss_pred ---CCCCeEEEEeecCchhH
Q psy3143 266 ---SRTRQTMLFSATMTDAV 282 (337)
Q Consensus 266 ---~~~~q~i~~SAT~~~~~ 282 (337)
..++.+|++|. ++..+
T Consensus 369 lAkel~ipVi~lsQ-LnR~~ 387 (472)
T PRK06904 369 LAKELKVPVVALSQ-LNRTL 387 (472)
T ss_pred HHHHhCCeEEEEEe-cCchh
Confidence 23677777774 44443
No 452
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.22 E-value=0.19 Score=53.60 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.+.+++|.|..|||||.+...-++..++... .-...++|||+.|+..+..+..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 5679999999999999998777777776432 223557999999999998887766653
No 453
>KOG0331|consensus
Probab=93.20 E-value=0.6 Score=44.84 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=57.1
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCC
Q psy3143 160 DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSL 235 (337)
Q Consensus 160 ~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l 235 (337)
..++++||.|-|+--|.++...++... +.+..++|+.+.......++ ..+.|+|||. +.. +.+++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAa-RGLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAA-RGLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEcc------ccc-ccCCC
Confidence 457799999999999998877776543 78899999998777665554 4579999993 333 37889
Q ss_pred CCccEEEE
Q psy3143 236 SDIEVLVL 243 (337)
Q Consensus 236 ~~~~~iVi 243 (337)
..+++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 99999984
No 454
>PRK07413 hypothetical protein; Validated
Probab=93.18 E-value=0.2 Score=46.24 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=78.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH----HHHHHHHHHHHHhhcc--CcEEEEEeCCccHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE----LGVQVYQVTRQLAQFT--SVEVALSVGGLEVK 203 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~----La~q~~~~~~~l~~~~--~~~v~~~~~~~~~~ 203 (337)
-+.|....|-|||.+++=-++..+=.........||+|+.=-+. -.+. ..+..+.... ++.+..+-.+....
T Consensus 21 li~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQFlKg~~~~~GE~--~~l~~l~~~~~~~i~~~~~g~~~~~~ 98 (382)
T PRK07413 21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDED--AAIEALQRGFPHLIDQVRTGRAEFFG 98 (382)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEEEcCCCCCCcHH--HHHHhccccCCCceEEEECCCCCeee
Confidence 46677889999999988777777621100111238888863332 1111 1222222100 23322211110000
Q ss_pred H---HHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHcCCCCeEEEEeecC
Q psy3143 204 V---QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 204 ~---~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
. ..... ......+..... .+.-..+++||+||+-..++.++. ..+..+++..|...-+|+..-..
T Consensus 99 ~~~~~~~~~--------~~a~~~~~~a~~--~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~a 168 (382)
T PRK07413 99 ADEITKFDR--------QEAQRGWDIAKG--AIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAA 168 (382)
T ss_pred CCCCcHHHH--------HHHHHHHHHHHH--HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 0 00000 001223333322 233457899999999988777743 45667777788888888888888
Q ss_pred chhHHHHHH
Q psy3143 279 TDAVNDLVS 287 (337)
Q Consensus 279 ~~~~~~~~~ 287 (337)
|+.+.+++.
T Consensus 169 p~~Lie~AD 177 (382)
T PRK07413 169 PQSLLDIAD 177 (382)
T ss_pred CHHHHHhCC
Confidence 888888764
No 455
>PRK13764 ATPase; Provisional
Probab=93.16 E-value=0.22 Score=49.04 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.+++++++|+||||||+.. ..++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999754 4455555
No 456
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.14 E-value=0.23 Score=42.33 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=30.6
Q ss_pred CcHHHHHHHhcCCCCCCCCccEEEEecccccc-c----ccHHHHHHHHHHHc-CCCCeEEEEeecC
Q psy3143 219 TPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-D----EHFASQMKEIIRLC-SRTRQTMLFSATM 278 (337)
Q Consensus 219 Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~-~----~~~~~~~~~i~~~~-~~~~q~i~~SAT~ 278 (337)
+...++..+...+. . -+|||||+|.+. . ..+...+..++... ......++++++-
T Consensus 105 ~l~~~~~~l~~~~~----~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGK----K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHC----C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCC----c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 44455555554311 1 689999999988 2 34566666666653 2233445566654
No 457
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=0.92 Score=41.45 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
....+++||||||.|.... .+.+...++.-+..+.+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEE-EeC
Confidence 4678999999999886443 2344444444344444444 444
No 458
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.13 E-value=1.1 Score=42.73 Aligned_cols=138 Identities=16% Similarity=0.056 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEE-eCCccHHHH-
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEVKVQ- 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~-~~~~~~~~~- 205 (337)
|.-++|.|+||+|||...+-.+.+.... .+..+++++. -.-..++...+..... ++....+ .|.......
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-----~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-----EGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-----CCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHH
Confidence 4467899999999997766555554421 1345666653 2233444444333222 2221111 122221111
Q ss_pred -----HHHHhcCCCEEE-E----CcHHHHHHHhcCCCCCCCCccEEEEecccccccc----cHHHHHHHHHHHc-----C
Q psy3143 206 -----ESVLRKCPDIVI-A----TPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE----HFASQMKEIIRLC-----S 266 (337)
Q Consensus 206 -----~~~~~~~~~Ilv-~----Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~----~~~~~~~~i~~~~-----~ 266 (337)
...+... .+.| . |+..+...+... ..-..+++||||=.+.|... +....+..+.+.+ .
T Consensus 267 ~~~~a~~~l~~~-~l~i~d~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 267 KLTSAAGKLSEA-PLYIDDTPGLTITELRAKARRL--KREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHH--HHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1222232 3444 2 334444433221 11124789999999877422 1222333333322 2
Q ss_pred CCCeEEEEee
Q psy3143 267 RTRQTMLFSA 276 (337)
Q Consensus 267 ~~~q~i~~SA 276 (337)
.++.++++|.
T Consensus 344 ~~i~vi~lsq 353 (434)
T TIGR00665 344 LNVPVIALSQ 353 (434)
T ss_pred hCCeEEEEec
Confidence 4667777765
No 459
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.13 E-value=0.36 Score=40.16 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=35.9
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC----CCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPR----DDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|.-+++.|++|+|||...+-.+.+.+...+. ...+.+++++..-.. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 45568899999999998876666665532211 114567888876544 5566777776653
No 460
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.81 Score=41.46 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
....+++|||+||.|.... .+.+...++..+..+ ++++.++-+.
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t-~~il~~~~~~ 134 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGV-FIILLCENLE 134 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCe-EEEEEeCChH
Confidence 4678999999999886444 233334444333344 4444444343
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.03 E-value=0.21 Score=41.57 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHh-CCCCEEEEcCCCCchhHHh
Q psy3143 115 TPIQAATIPVAL-LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 115 ~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~ 145 (337)
++-|...+.... .|..++++|+||||||...
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 555666666544 5678999999999999864
No 462
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.01 E-value=1.1 Score=46.54 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
++++.||+|+|||...-.
T Consensus 201 n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred ceEEECCCCCCHHHHHHH
Confidence 899999999999987643
No 463
>PRK13695 putative NTPase; Provisional
Probab=93.00 E-value=1.2 Score=36.34 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|+|||+....
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987654
No 464
>KOG1807|consensus
Probab=92.93 E-value=0.22 Score=49.29 Aligned_cols=70 Identities=19% Similarity=-0.007 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
...-|..|+...+.++-.++.||+|+|||++-+..+-..+.++......-.++++|-|...+.|....+-
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 3456999999999999999999999999999877555444433333334568999988887777654443
No 465
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.73 E-value=0.12 Score=45.59 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCEEEEcCCCCchhHHhHH
Q psy3143 119 AATIPVALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 119 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+++..+..|+++++.||+|+|||..+..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 34455667889999999999999987643
No 466
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.69 E-value=1 Score=36.80 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=29.7
Q ss_pred EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 131 ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
++|.|++|||||..+...+.. .+.+++|+.-.+.+-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 579999999999765544322 245788887776665554444443
No 467
>KOG0333|consensus
Probab=92.67 E-value=0.76 Score=43.80 Aligned_cols=70 Identities=16% Similarity=0.328 Sum_probs=54.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh----cCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR----KCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
.+.+||.+.+..-|..+++.|.+++ +.++.++|+.+.......+. +..+|+|||. +.. +.++..+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g----~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAg-RGIDIpn 585 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG----YKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAG-RGIDIPN 585 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc----ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccc-cCCCCCc
Confidence 5679999999998888777777655 89999999998776654443 3579999993 222 3778899
Q ss_pred ccEEE
Q psy3143 238 IEVLV 242 (337)
Q Consensus 238 ~~~iV 242 (337)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 98877
No 468
>KOG0734|consensus
Probab=92.62 E-value=0.89 Score=43.62 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=26.2
Q ss_pred ccEEEEecccccccc------cHH-HHHHHHHHHc---CCCCeEEEEeecCchh
Q psy3143 238 IEVLVLDEADRMLDE------HFA-SQMKEIIRLC---SRTRQTMLFSATMTDA 281 (337)
Q Consensus 238 ~~~iViDEad~l~~~------~~~-~~~~~i~~~~---~~~~q~i~~SAT~~~~ 281 (337)
-.+|.|||.|.+... .|. ..+..++..+ ..+--+|++.||--++
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 457889999987642 122 2233343333 4455689999995444
No 469
>KOG0740|consensus
Probab=92.59 E-value=0.084 Score=49.28 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=36.4
Q ss_pred CCCccEEEEecccccccc--------cHHHHHHHHHHH----cCCCCeEEEEeec-CchhHHHHHHhhCCCCeE
Q psy3143 235 LSDIEVLVLDEADRMLDE--------HFASQMKEIIRL----CSRTRQTMLFSAT-MTDAVNDLVSVSLTRPVR 295 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~--------~~~~~~~~i~~~----~~~~~q~i~~SAT-~~~~~~~~~~~~~~~p~~ 295 (337)
..+..+++|||+|.++.. +-......++.. ...+-++++++|| +|.++.+.+...+....+
T Consensus 243 ~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~y 316 (428)
T KOG0740|consen 243 SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLY 316 (428)
T ss_pred hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceee
Confidence 344678889999988742 222333334333 2345588899999 556677666654443433
No 470
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.57 E-value=4.8 Score=40.48 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++|+..+..+...+... ++.+..++++....... ....+..+|+|||- .+.+ .+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~r--GfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLRE--GLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhcC--CeeeC
Confidence 4678999999999999888877764 47788888876544332 22335678999992 3333 78899
Q ss_pred CccEEEEecccccccc-cHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 237 DIEVLVLDEADRMLDE-HFASQMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 237 ~~~~iViDEad~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
.++++|+=+++...-. +....++.+-+.. .....++++--..+..+..
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQK 559 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHH
Confidence 9999998888864221 2222333332211 2345666666666655443
No 471
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.55 E-value=0.28 Score=44.92 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=28.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.-+.++|++|+|||...+..++...+.....+.+++++|+.--.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 35679999999999877655544433222222345788887543
No 472
>PRK09165 replicative DNA helicase; Provisional
Probab=92.46 E-value=2.5 Score=41.02 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=18.2
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
.-++|.|.||+|||...+-.+.+..
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHH
Confidence 4578899999999987655444443
No 473
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.45 E-value=0.96 Score=44.03 Aligned_cols=51 Identities=27% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
|.-+++.|++|+|||...+..+.+.+. .+.+++|++-. +-..++.+.+..+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~------~g~~~~yis~e-~~~~~i~~~~~~~ 323 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACR------RGERCLLFAFE-ESRAQLIRNARSW 323 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEec-CCHHHHHHHHHHc
Confidence 456789999999999887666666542 25568888644 3455666655544
No 474
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.1 Score=46.57 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.|+++.||||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 489999999999998653
No 475
>KOG0739|consensus
Probab=92.36 E-value=3.4 Score=36.90 Aligned_cols=63 Identities=10% Similarity=0.197 Sum_probs=35.5
Q ss_pred ccEEEEeccccccccc---HHHHHH----HHHHHc----CCCCeEEEEeecCchh-HHHHHHhhCCCCeEEEeCC
Q psy3143 238 IEVLVLDEADRMLDEH---FASQMK----EIIRLC----SRTRQTMLFSATMTDA-VNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 238 ~~~iViDEad~l~~~~---~~~~~~----~i~~~~----~~~~q~i~~SAT~~~~-~~~~~~~~~~~p~~i~~~~ 300 (337)
-++|.|||+|.+.... -....+ .++-++ +.+--++++.||-.+. +...+++-+....+|-.++
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe 300 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPE 300 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCc
Confidence 4689999999775421 111222 223232 2345688899997666 4455665555555555443
No 476
>KOG0730|consensus
Probab=92.33 E-value=2 Score=42.20 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=35.3
Q ss_pred cCCccccCCCCHHHHHHHHh---CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 89 ENSSFHQMNLSRPLLKAIGA---LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
..-+|+++|=-..+.+.|+. .....|-.+..-.+ .--+.|++.||+|+|||+.+
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 34579999866666666542 23444444443332 23468999999999999875
No 477
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.32 E-value=2 Score=34.03 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=27.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
..+-+++++||.-.-++......+..+++.+. . .++++.
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~t 124 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVS 124 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEE
Confidence 44567999999998888777777777776662 3 454544
No 478
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.32 E-value=1.2 Score=44.07 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=55.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.|+|+..|.++++.+... ++.+..++|+.........+ ....+|||||. .+.. .+++..
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCccC
Confidence 567999999999999988877654 47889999987765544333 35679999993 3433 788999
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
++++|.-..
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 999987544
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.31 E-value=0.26 Score=44.60 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=26.7
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
+..+.+++++|+||||||+..-. ++..+ + ...+++++-.+.++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~a-l~~~~---~---~~~~iv~ied~~El 183 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKS-LVDEI---P---KDERIITIEDTREI 183 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHH-HHccC---C---ccccEEEEcCcccc
Confidence 34677999999999999986422 33222 1 23346666555444
No 480
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=92.24 E-value=0.16 Score=50.55 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.++++.||||||||..+++|.+-.. +..+||+=|-.|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~--------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW--------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC--------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987542 456899999999876554443
No 481
>PRK10263 DNA translocase FtsK; Provisional
Probab=92.16 E-value=1.2 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=20.1
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
.+++|.|.||||||.+....++..++
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999986555555544
No 482
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.16 E-value=0.8 Score=47.42 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998753
No 483
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.14 E-value=1.7 Score=43.47 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=54.5
Q ss_pred CeeEEEEcCCHH--------HHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhc
Q psy3143 162 NTRVLVLVPTRE--------LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHN 229 (337)
Q Consensus 162 ~~~~lil~Pt~~--------La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~ 229 (337)
+.+++|++|+.+ -+..++..+... +.+..+..++|+......... ..+..+|+|||. .+..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 557999999863 233444444432 246789999999876554433 235689999994 3333
Q ss_pred CCCCCCCCccEEEEeccccc
Q psy3143 230 TPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 230 ~~~~~l~~~~~iViDEad~l 249 (337)
.+++.++++||+..+++.
T Consensus 521 --GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 521 --GVDVPNATVMVIEDAERF 538 (630)
T ss_pred --CcccCCCcEEEEeCCCcC
Confidence 788999999999888864
No 484
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.14 E-value=0.98 Score=42.13 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=37.9
Q ss_pred CccEEEEecccccccccHHHHHHHHHHH----c----CCCCeEEEEeecCchhHHHHHH--hhC--CCCeEEEeCCCcc
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRL----C----SRTRQTMLFSATMTDAVNDLVS--VSL--TRPVRVFVDNNHE 303 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~----~----~~~~q~i~~SAT~~~~~~~~~~--~~~--~~p~~i~~~~~~~ 303 (337)
+=..+.+||+|.|...+-...++.+-.. + +....+-+.+||--+--..+.. .++ .+|..|.+++...
T Consensus 173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRE 251 (403)
T ss_pred CCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhh
Confidence 3357999999998766644444333221 1 2234455667775544444444 333 4688888776443
No 485
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.07 E-value=1.6 Score=36.86 Aligned_cols=44 Identities=25% Similarity=0.132 Sum_probs=30.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc---CCHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV---PTRELGVQV 178 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~---Pt~~La~q~ 178 (337)
.=+++.|+.|+|||...+..++-.+. .+.++.+++ |+|+...|+
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~------~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLM------NGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHh------CCceEEEEEechhHHHHHHHH
Confidence 45789999999999887776666663 355677765 455555554
No 486
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=92.05 E-value=0.15 Score=50.81 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.++++.||||||||..+++|.+-.. +..+||+=|--|+........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~--------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW--------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC--------CCCEEEEeCcchHHHHHHHHHHh
Confidence 5899999999999999999976653 34588888888887766555444
No 487
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.02 E-value=1 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.044 Sum_probs=17.1
Q ss_pred CCEEEEcCCCCchhHHhHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPI 149 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~ 149 (337)
.++++.||+|+|||...-..+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 389999999999998764433
No 488
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.01 E-value=0.11 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHh
Q psy3143 125 ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+.+++.++++||+|+|||...
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHH
Confidence 457789999999999999754
No 489
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.98 E-value=4 Score=36.45 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
-+..+++|||+||.|.... .+.+.+++..-+.+.-+|+.|..
T Consensus 93 e~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CCCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCC
Confidence 4678999999999986444 34555555554445555554443
No 490
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.96 E-value=0.9 Score=42.38 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=20.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
-.|+.+++.||+|+|||..... +...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 3678899999999999975433 44443
No 491
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.94 E-value=0.67 Score=47.91 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||||+|||..+-
T Consensus 541 ~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 541 SFLFSGPTGVGKTELTK 557 (821)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 36899999999997653
No 492
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.89 E-value=0.15 Score=34.08 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|..+++.|++|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 493
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=91.75 E-value=0.24 Score=49.30 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.++++.||||+|||..+++|.+-.. ++-++|+=|..|+........+++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~--------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW--------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC--------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5889999999999999999975321 345888889999877666655443
No 494
>PRK08760 replicative DNA helicase; Provisional
Probab=91.69 E-value=1.6 Score=42.16 Aligned_cols=113 Identities=19% Similarity=0.089 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH--
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ-- 205 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~-- 205 (337)
|.-++|.|.||.|||...+-.+.+.... .+..++|.+. -.-..|+...+..........- +..|.......
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~-----~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK-----SKKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh-----cCCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHH
Confidence 3457789999999998765544444321 1334666643 2223455444443322111110 11122221111
Q ss_pred ----HHHHhcCCCEEEE-----CcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 206 ----ESVLRKCPDIVIA-----TPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 206 ----~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
...+.. ..+.|. |+..+...+... ..-..+++||||=.+.|-
T Consensus 302 ~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l--~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRL--KREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHH--HHhcCCCEEEEecHHhcC
Confidence 112222 245444 344444433221 112357899999998774
No 495
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.68 E-value=0.29 Score=43.05 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.|+.++|.|++|||||.-.+..+...+. .+-++++++ +.+...++.+.+..++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~------~ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAR------EGEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHh------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 5678999999999999877666666552 244566665 4455566666666543
No 496
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.67 E-value=0.41 Score=47.70 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH--HHHHHHHHHHHHh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE--LGVQVYQVTRQLA 186 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~--La~q~~~~~~~l~ 186 (337)
..++++|.|+||+|||..+...+.+.+. .+..++++=|-.. |...+...++..+
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~------~g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIR------RGDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 3468999999999999887665555552 1345777777754 6666666666554
No 497
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=91.62 E-value=3.2 Score=34.83 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=32.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHc-CC--CCeEEEEeecCchhH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLC-SR--TRQTMLFSATMTDAV 282 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~--~~q~i~~SAT~~~~~ 282 (337)
.+-+++|+||...-++......+..++... .. ..+++++|.--...+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 567899999999988877666666655443 32 456777776444333
No 498
>KOG2543|consensus
Probab=91.60 E-value=4.5 Score=37.33 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=44.9
Q ss_pred CccEEEEeccccccccc--HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 237 DIEVLVLDEADRMLDEH--FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~--~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
.--++|+|-||.+-+.+ ....+.++...++.+.-.|++|+++++...- .+.....|+.++.+.
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~-~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL-INTGTLEIVVLHFPQ 179 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh-cccCCCCceEEecCC
Confidence 45689999999887665 4566666777788787788999998865332 223455677777754
No 499
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.52 E-value=2.6 Score=34.58 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=28.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||.-.-++......+..++..+... .+++++.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 4566899999999888877777777776665444 3444443
No 500
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.49 E-value=1.8 Score=34.62 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCC------------------eeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN------------------TRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~------------------~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|.-+.+.|++|+|||+ ++..+........+ ..+.++..
T Consensus 24 ~g~~~~i~G~nGsGKSt-----ll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------------ 80 (157)
T cd00267 24 AGEIVALVGPNGSGKST-----LLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------------ 80 (157)
T ss_pred CCCEEEEECCCCCCHHH-----HHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------------
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
-+.|...+.... ......-+++++||...-++......+..++..+...
T Consensus 81 -----------------------------lS~G~~~r~~l~--~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 81 -----------------------------LSGGQRQRVALA--RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred -----------------------------CCHHHHHHHHHH--HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Q ss_pred CeEEEEeecCchhHHHH
Q psy3143 269 RQTMLFSATMTDAVNDL 285 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~~~ 285 (337)
.++++++.--...+...
T Consensus 130 ~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 130 GRTVIIVTHDPELAELA 146 (157)
T ss_pred CCEEEEEeCCHHHHHHh
Done!