Query psy3143
Match_columns 337
No_of_seqs 269 out of 2926
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 17:33:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 7.4E-42 2.5E-46 298.0 25.6 214 88-302 26-241 (242)
2 2db3_A ATP-dependent RNA helic 100.0 4.7E-41 1.6E-45 317.0 30.2 240 89-332 54-297 (434)
3 3fmo_B ATP-dependent RNA helic 100.0 2.3E-42 8E-47 310.1 20.2 212 83-300 84-299 (300)
4 1wrb_A DJVLGB; RNA helicase, D 100.0 2.7E-41 9.4E-46 296.3 22.3 224 88-312 20-253 (253)
5 3ber_A Probable ATP-dependent 100.0 7.8E-41 2.7E-45 292.6 24.0 208 89-299 41-248 (249)
6 3iuy_A Probable ATP-dependent 100.0 2.8E-40 9.6E-45 285.3 22.9 209 88-298 16-228 (228)
7 2pl3_A Probable ATP-dependent 100.0 1.1E-39 3.7E-44 283.1 25.5 212 88-300 22-234 (236)
8 1vec_A ATP-dependent RNA helic 100.0 2.6E-39 8.9E-44 274.8 26.3 202 91-296 3-205 (206)
9 3bor_A Human initiation factor 100.0 7.6E-40 2.6E-44 284.3 21.7 208 89-300 28-236 (237)
10 2gxq_A Heat resistant RNA depe 100.0 3E-39 1E-43 274.5 24.5 205 92-299 2-206 (207)
11 2oxc_A Probable ATP-dependent 100.0 3.6E-39 1.2E-43 278.8 23.8 206 89-299 22-229 (230)
12 3ly5_A ATP-dependent RNA helic 100.0 2.6E-39 8.7E-44 285.1 23.2 205 90-294 51-258 (262)
13 1q0u_A Bstdead; DEAD protein, 100.0 1.1E-39 3.6E-44 280.0 20.1 206 91-300 4-213 (219)
14 1qde_A EIF4A, translation init 100.0 4.5E-39 1.5E-43 276.9 23.4 208 90-302 13-220 (224)
15 1t6n_A Probable ATP-dependent 100.0 4.4E-38 1.5E-42 270.1 25.1 205 90-298 13-220 (220)
16 3dkp_A Probable ATP-dependent 100.0 1.8E-38 6.1E-43 277.0 21.3 212 89-302 23-244 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 1.5E-37 5E-42 291.4 28.1 241 88-332 12-271 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 1.7E-37 5.9E-42 290.5 27.6 241 86-332 32-272 (410)
19 3fmp_B ATP-dependent RNA helic 100.0 2.3E-37 7.8E-42 295.6 19.0 241 84-332 85-329 (479)
20 3eiq_A Eukaryotic initiation f 100.0 1.4E-35 4.7E-40 277.6 27.8 240 88-333 37-277 (414)
21 3fht_A ATP-dependent RNA helic 100.0 2.1E-35 7.3E-40 276.0 26.0 241 84-332 18-262 (412)
22 1s2m_A Putative ATP-dependent 100.0 4.5E-35 1.6E-39 273.1 27.7 235 90-332 20-254 (400)
23 1xti_A Probable ATP-dependent 100.0 1.1E-34 3.7E-39 269.6 27.8 236 90-332 7-246 (391)
24 1fuu_A Yeast initiation factor 100.0 2.7E-35 9.2E-40 273.7 23.1 236 90-332 20-255 (394)
25 3pey_A ATP-dependent RNA helic 100.0 3.6E-34 1.2E-38 266.0 26.9 233 90-332 4-239 (395)
26 1hv8_A Putative ATP-dependent 100.0 2.9E-33 1E-37 257.3 27.6 230 90-332 5-235 (367)
27 3sqw_A ATP-dependent RNA helic 100.0 4.7E-34 1.6E-38 278.7 23.5 228 91-318 17-267 (579)
28 3i5x_A ATP-dependent RNA helic 100.0 2.2E-33 7.4E-38 273.2 23.9 228 91-318 68-318 (563)
29 2z0m_A 337AA long hypothetical 100.0 1.2E-31 4E-36 243.9 26.6 208 98-319 1-208 (337)
30 3fho_A ATP-dependent RNA helic 100.0 1.5E-31 5.1E-36 256.8 17.9 234 89-332 117-353 (508)
31 3l9o_A ATP-dependent RNA helic 100.0 3.4E-31 1.2E-35 272.9 21.2 202 91-312 162-365 (1108)
32 3oiy_A Reverse gyrase helicase 100.0 9.6E-31 3.3E-35 245.2 14.0 201 101-316 9-239 (414)
33 2v1x_A ATP-dependent DNA helic 100.0 1.3E-28 4.3E-33 239.5 21.7 226 90-332 20-262 (591)
34 4ddu_A Reverse gyrase; topoiso 100.0 1.7E-28 5.8E-33 252.8 17.8 194 108-316 74-296 (1104)
35 2zj8_A DNA helicase, putative 100.0 5.5E-28 1.9E-32 241.4 14.6 179 92-280 2-181 (720)
36 2va8_A SSO2462, SKI2-type heli 99.9 1.9E-27 6.5E-32 237.5 17.6 179 91-280 8-187 (715)
37 1gku_B Reverse gyrase, TOP-RG; 99.9 1.9E-28 6.6E-33 252.3 10.4 193 104-313 48-259 (1054)
38 2ykg_A Probable ATP-dependent 99.9 8.5E-27 2.9E-31 232.2 20.4 176 103-279 3-184 (696)
39 4a2p_A RIG-I, retinoic acid in 99.9 8E-27 2.7E-31 226.2 19.5 171 109-280 3-178 (556)
40 2p6r_A Afuhel308 helicase; pro 99.9 6.5E-28 2.2E-32 240.3 11.2 187 92-291 2-193 (702)
41 1oyw_A RECQ helicase, ATP-depe 99.9 1.3E-26 4.5E-31 222.8 18.5 192 91-297 2-205 (523)
42 3tbk_A RIG-I helicase domain; 99.9 1.2E-26 4.2E-31 224.6 18.1 168 112-280 3-176 (555)
43 3b6e_A Interferon-induced heli 99.9 2.7E-27 9.1E-32 201.8 10.6 167 110-277 30-216 (216)
44 4a2q_A RIG-I, retinoic acid in 99.9 5.1E-26 1.8E-30 229.5 21.3 171 108-279 243-418 (797)
45 4f92_B U5 small nuclear ribonu 99.9 1.5E-25 5.3E-30 238.6 24.1 211 98-318 911-1132(1724)
46 2xgj_A ATP-dependent RNA helic 99.9 2.5E-25 8.6E-30 227.5 22.3 185 109-314 83-269 (1010)
47 1tf5_A Preprotein translocase 99.9 3E-26 1E-30 224.7 14.0 162 108-280 79-288 (844)
48 3llm_A ATP-dependent RNA helic 99.9 8.8E-26 3E-30 195.4 14.7 173 109-294 57-232 (235)
49 4f92_B U5 small nuclear ribonu 99.9 3E-25 1E-29 236.4 19.3 215 110-330 76-306 (1724)
50 4a2w_A RIG-I, retinoic acid in 99.9 3.2E-25 1.1E-29 226.4 18.7 171 108-279 243-418 (936)
51 2fsf_A Preprotein translocase 99.9 1.8E-25 6.3E-30 218.6 14.3 148 109-267 71-240 (853)
52 4a4z_A Antiviral helicase SKI2 99.9 4.9E-25 1.7E-29 225.3 15.9 154 113-282 39-192 (997)
53 1nkt_A Preprotein translocase 99.9 1.4E-24 4.7E-29 212.9 15.4 162 108-280 107-316 (922)
54 2eyq_A TRCF, transcription-rep 99.9 1.9E-23 6.4E-28 216.6 23.4 218 96-335 586-814 (1151)
55 1gm5_A RECG; helicase, replica 99.9 1.1E-23 3.7E-28 209.5 19.9 167 102-286 358-534 (780)
56 1wp9_A ATP-dependent RNA helic 99.9 3E-23 1E-27 196.9 20.2 167 113-287 9-178 (494)
57 4gl2_A Interferon-induced heli 99.9 5.3E-25 1.8E-29 219.4 7.4 168 112-280 6-193 (699)
58 1rif_A DAR protein, DNA helica 99.9 3.2E-24 1.1E-28 190.6 9.0 155 112-282 112-266 (282)
59 2oca_A DAR protein, ATP-depend 99.9 9.1E-23 3.1E-27 196.0 11.2 156 111-282 111-266 (510)
60 2whx_A Serine protease/ntpase/ 99.9 1.5E-23 5.1E-28 204.5 2.7 181 96-299 155-336 (618)
61 2jlq_A Serine protease subunit 99.9 1.2E-22 4.1E-27 192.0 8.5 166 110-298 1-168 (451)
62 2xau_A PRE-mRNA-splicing facto 99.9 4.6E-21 1.6E-25 191.4 17.9 210 90-318 71-284 (773)
63 2ipc_A Preprotein translocase 99.9 3.3E-21 1.1E-25 188.6 14.1 132 108-250 75-215 (997)
64 2fwr_A DNA repair protein RAD2 99.9 4.1E-21 1.4E-25 182.7 14.4 137 112-279 92-229 (472)
65 3o8b_A HCV NS3 protease/helica 99.8 6.2E-22 2.1E-26 192.2 7.6 144 114-281 218-363 (666)
66 2fz4_A DNA repair protein RAD2 99.8 2E-20 7E-25 161.6 15.4 139 112-281 92-231 (237)
67 2wv9_A Flavivirin protease NS2 99.8 7.5E-21 2.6E-25 186.8 2.5 163 105-286 202-381 (673)
68 2v6i_A RNA helicase; membrane, 99.8 4.4E-19 1.5E-23 166.6 13.1 139 127-284 1-140 (431)
69 2z83_A Helicase/nucleoside tri 99.8 1.8E-19 6.3E-24 170.5 9.8 148 124-296 17-169 (459)
70 3h1t_A Type I site-specific re 99.8 2.7E-19 9.1E-24 174.8 10.9 156 112-282 177-345 (590)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.6E-18 5.4E-23 176.8 13.7 155 112-280 270-440 (1038)
72 1yks_A Genome polyprotein [con 99.8 1.8E-18 6.2E-23 162.7 10.5 136 125-286 5-148 (440)
73 3crv_A XPD/RAD3 related DNA he 99.7 2.7E-17 9.1E-22 159.1 11.7 129 113-251 3-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.7 2.2E-17 7.6E-22 161.9 7.9 140 123-288 150-290 (677)
75 1z63_A Helicase of the SNF2/RA 99.6 1.1E-15 3.7E-20 146.3 11.4 149 113-280 37-189 (500)
76 2vl7_A XPD; helicase, unknown 99.6 1.3E-15 4.3E-20 146.9 8.8 128 109-250 4-188 (540)
77 3dmq_A RNA polymerase-associat 99.6 1.5E-15 5E-20 155.5 9.1 160 112-279 152-317 (968)
78 1z3i_X Similar to RAD54-like; 99.5 2.9E-13 1E-17 133.1 18.2 160 113-280 55-232 (644)
79 3mwy_W Chromo domain-containin 99.5 1.5E-13 5.2E-18 138.4 13.2 154 113-278 236-405 (800)
80 3jux_A Protein translocase sub 99.3 3.4E-11 1.2E-15 116.4 14.2 130 111-250 73-258 (822)
81 1w36_D RECD, exodeoxyribonucle 99.2 7.7E-11 2.6E-15 114.9 10.6 145 115-276 151-297 (608)
82 4a15_A XPD helicase, ATP-depen 99.1 9.1E-11 3.1E-15 114.6 8.1 83 113-200 3-89 (620)
83 3upu_A ATP-dependent DNA helic 98.5 8.1E-07 2.8E-11 83.7 13.1 139 107-275 19-162 (459)
84 3e1s_A Exodeoxyribonuclease V, 98.5 7.4E-07 2.5E-11 86.1 12.1 125 113-275 189-313 (574)
85 2gk6_A Regulator of nonsense t 98.5 3E-06 1E-10 82.9 16.1 70 111-185 178-247 (624)
86 2xzl_A ATP-dependent helicase 98.4 4.3E-06 1.5E-10 83.8 16.0 70 111-185 358-427 (802)
87 2wjy_A Regulator of nonsense t 98.4 7.1E-06 2.4E-10 82.1 16.0 70 111-185 354-423 (800)
88 4b3f_X DNA-binding protein smu 98.3 1.7E-06 5.9E-11 85.0 10.3 67 113-185 189-256 (646)
89 2o0j_A Terminase, DNA packagin 97.8 0.00017 5.8E-09 65.8 11.6 72 113-188 163-234 (385)
90 3cpe_A Terminase, DNA packagin 97.5 0.00095 3.2E-08 64.7 13.4 73 113-189 163-235 (592)
91 1c4o_A DNA nucleotide excision 97.5 0.00017 5.8E-09 70.9 8.1 68 110-187 6-78 (664)
92 3vkw_A Replicase large subunit 97.5 0.00049 1.7E-08 63.7 10.3 90 130-256 163-252 (446)
93 3ec2_A DNA replication protein 97.5 0.00057 1.9E-08 55.3 9.5 21 127-147 37-57 (180)
94 2b8t_A Thymidine kinase; deoxy 97.4 0.00016 5.5E-09 60.9 5.7 114 127-276 11-124 (223)
95 3lfu_A DNA helicase II; SF1 he 97.4 0.00027 9.2E-09 69.3 8.2 81 112-196 8-90 (647)
96 2orw_A Thymidine kinase; TMTK, 97.4 0.00088 3E-08 54.6 9.1 40 127-172 2-41 (184)
97 3te6_A Regulatory protein SIR3 97.3 0.0066 2.3E-07 53.8 15.1 81 237-332 132-212 (318)
98 2kjq_A DNAA-related protein; s 97.3 0.0005 1.7E-08 54.1 6.3 21 127-147 35-55 (149)
99 1xx6_A Thymidine kinase; NESG, 97.2 0.00061 2.1E-08 55.9 6.7 39 128-172 8-46 (191)
100 3kl4_A SRP54, signal recogniti 97.2 0.0031 1.1E-07 58.4 11.9 131 129-289 98-234 (433)
101 1l8q_A Chromosomal replication 97.1 0.0026 8.8E-08 56.6 10.4 20 128-147 37-56 (324)
102 1pjr_A PCRA; DNA repair, DNA r 97.1 0.0014 4.7E-08 65.2 8.7 82 112-197 10-93 (724)
103 3u4q_A ATP-dependent helicase/ 97.0 0.0013 4.3E-08 69.3 8.6 72 113-186 10-81 (1232)
104 1uaa_A REP helicase, protein ( 97.0 0.00059 2E-08 67.3 5.6 81 113-197 2-85 (673)
105 2j9r_A Thymidine kinase; TK1, 97.0 0.0013 4.3E-08 54.7 6.2 40 128-173 28-67 (214)
106 2zpa_A Uncharacterized protein 96.9 0.0021 7.2E-08 62.4 7.9 114 113-280 175-290 (671)
107 2orv_A Thymidine kinase; TP4A 96.9 0.0042 1.4E-07 52.2 8.6 41 127-173 18-58 (234)
108 1w4r_A Thymidine kinase; type 96.9 0.0034 1.2E-07 51.3 7.8 39 127-171 19-57 (195)
109 2d7d_A Uvrabc system protein B 96.9 0.0034 1.1E-07 61.6 9.2 66 113-187 12-82 (661)
110 3u61_B DNA polymerase accessor 96.8 0.011 3.8E-07 52.4 11.5 41 236-276 104-144 (324)
111 1d2n_A N-ethylmaleimide-sensit 96.7 0.027 9.3E-07 48.5 13.4 18 129-146 65-82 (272)
112 3e2i_A Thymidine kinase; Zn-bi 96.7 0.0057 2E-07 50.8 8.4 107 127-273 27-133 (219)
113 3dm5_A SRP54, signal recogniti 96.7 0.016 5.4E-07 53.7 12.1 56 130-194 102-159 (443)
114 2w58_A DNAI, primosome compone 96.7 0.012 4.1E-07 48.2 10.0 18 129-146 55-72 (202)
115 3bos_A Putative DNA replicatio 96.6 0.0042 1.4E-07 52.2 7.1 20 127-146 51-70 (242)
116 2z4s_A Chromosomal replication 96.6 0.02 6.8E-07 53.3 12.0 41 237-277 194-236 (440)
117 1a5t_A Delta prime, HOLB; zinc 96.6 0.0071 2.4E-07 54.1 8.6 39 115-154 4-49 (334)
118 2v1u_A Cell division control p 96.6 0.0053 1.8E-07 55.6 7.9 20 127-146 43-62 (387)
119 3h4m_A Proteasome-activating n 96.6 0.014 4.8E-07 50.6 10.3 52 91-145 14-68 (285)
120 1sxj_E Activator 1 40 kDa subu 96.5 0.025 8.5E-07 50.7 12.0 43 235-278 132-174 (354)
121 2chg_A Replication factor C sm 96.4 0.037 1.3E-06 45.4 11.7 39 236-275 101-139 (226)
122 2qby_B CDC6 homolog 3, cell di 96.3 0.0093 3.2E-07 54.0 7.8 19 128-146 45-63 (384)
123 2p65_A Hypothetical protein PF 96.3 0.012 4.2E-07 47.0 7.7 20 128-147 43-62 (187)
124 3vfd_A Spastin; ATPase, microt 96.2 0.056 1.9E-06 49.3 12.7 19 128-146 148-166 (389)
125 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.049 1.7E-06 48.3 11.9 50 91-146 9-63 (322)
126 1g5t_A COB(I)alamin adenosyltr 96.1 0.0098 3.4E-07 48.7 6.2 138 128-287 28-172 (196)
127 3syl_A Protein CBBX; photosynt 96.1 0.0064 2.2E-07 53.5 5.6 19 128-146 67-85 (309)
128 1njg_A DNA polymerase III subu 96.1 0.33 1.1E-05 40.0 16.0 17 130-146 47-63 (250)
129 1jbk_A CLPB protein; beta barr 96.0 0.022 7.5E-07 45.6 7.8 19 128-146 43-61 (195)
130 3eie_A Vacuolar protein sortin 95.9 0.012 4E-07 52.3 6.4 50 91-146 15-69 (322)
131 3pfi_A Holliday junction ATP-d 95.9 0.09 3.1E-06 46.7 12.2 18 129-146 56-73 (338)
132 2dr3_A UPF0273 protein PH0284; 95.8 0.037 1.3E-06 46.5 8.9 50 127-183 22-71 (247)
133 1iqp_A RFCS; clamp loader, ext 95.7 0.32 1.1E-05 42.5 14.9 43 236-280 109-151 (327)
134 1fnn_A CDC6P, cell division co 95.7 0.025 8.7E-07 51.1 7.7 17 130-146 46-62 (389)
135 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.17 5.8E-06 42.9 12.5 19 128-146 39-57 (262)
136 2qp9_X Vacuolar protein sortin 95.6 0.034 1.2E-06 50.1 8.3 19 128-146 84-102 (355)
137 1n0w_A DNA repair protein RAD5 95.6 0.075 2.6E-06 44.5 10.0 45 127-171 23-67 (243)
138 1sxj_D Activator 1 41 kDa subu 95.5 0.065 2.2E-06 47.7 9.8 39 236-275 132-170 (353)
139 2z43_A DNA repair and recombin 95.5 0.077 2.6E-06 47.1 9.9 57 128-184 107-164 (324)
140 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.073 2.5E-06 44.2 9.3 37 127-169 22-58 (235)
141 3b9p_A CG5977-PA, isoform A; A 95.3 0.044 1.5E-06 47.7 7.6 19 128-146 54-72 (297)
142 2qby_A CDC6 homolog 1, cell di 95.2 0.13 4.3E-06 46.2 10.7 20 128-147 45-64 (386)
143 2r6a_A DNAB helicase, replicat 95.1 0.11 3.8E-06 48.3 10.2 39 127-170 202-240 (454)
144 3pvs_A Replication-associated 95.1 0.025 8.4E-07 52.7 5.6 18 129-146 51-68 (447)
145 2hjv_A ATP-dependent RNA helic 95.1 0.33 1.1E-05 38.0 11.6 74 162-246 35-112 (163)
146 1jr3_A DNA polymerase III subu 95.1 0.15 5.1E-06 45.7 10.7 41 235-277 117-157 (373)
147 4b4t_J 26S protease regulatory 95.0 0.028 9.6E-07 51.3 5.6 52 91-145 145-199 (405)
148 3cmu_A Protein RECA, recombina 94.9 0.044 1.5E-06 59.6 7.6 41 128-174 1427-1467(2050)
149 2gno_A DNA polymerase III, gam 94.9 0.23 7.8E-06 43.6 11.1 46 235-282 80-125 (305)
150 2zan_A Vacuolar protein sortin 94.9 0.068 2.3E-06 49.7 7.9 53 90-146 130-185 (444)
151 2q6t_A DNAB replication FORK h 94.8 0.27 9.1E-06 45.6 11.9 38 128-170 200-237 (444)
152 1sxj_C Activator 1 40 kDa subu 94.8 0.19 6.6E-06 44.6 10.4 39 236-275 109-147 (340)
153 1sxj_B Activator 1 37 kDa subu 94.7 0.13 4.6E-06 44.9 9.2 38 237-275 107-144 (323)
154 1ls1_A Signal recognition part 94.7 0.37 1.3E-05 42.0 11.9 20 127-146 97-116 (295)
155 1sxj_A Activator 1 95 kDa subu 94.7 0.16 5.6E-06 48.0 10.3 41 236-278 147-189 (516)
156 1fuk_A Eukaryotic initiation f 94.7 0.36 1.2E-05 37.8 10.9 74 162-246 30-107 (165)
157 1v5w_A DMC1, meiotic recombina 94.7 0.17 6E-06 45.2 9.9 45 128-172 122-166 (343)
158 2i1q_A DNA repair and recombin 94.6 0.19 6.5E-06 44.4 9.8 58 128-185 98-166 (322)
159 2ehv_A Hypothetical protein PH 94.6 0.024 8.3E-07 47.9 3.7 45 236-280 134-183 (251)
160 2p6n_A ATP-dependent RNA helic 94.4 0.35 1.2E-05 39.2 10.2 72 162-244 54-129 (191)
161 1xp8_A RECA protein, recombina 94.3 0.21 7.3E-06 45.0 9.6 40 127-172 73-112 (366)
162 3eaq_A Heat resistant RNA depe 94.3 0.5 1.7E-05 38.9 11.3 71 162-243 31-105 (212)
163 4a1f_A DNAB helicase, replicat 94.3 0.13 4.3E-06 45.9 7.9 49 127-182 45-93 (338)
164 2cvh_A DNA repair and recombin 94.3 0.31 1E-05 40.0 10.0 35 127-170 19-53 (220)
165 3bh0_A DNAB-like replicative h 94.2 0.22 7.4E-06 43.9 9.3 51 127-184 67-117 (315)
166 2chq_A Replication factor C sm 94.2 0.091 3.1E-06 46.0 6.9 17 130-146 40-56 (319)
167 2rb4_A ATP-dependent RNA helic 94.2 0.37 1.3E-05 38.2 9.9 73 162-245 34-110 (175)
168 1w5s_A Origin recognition comp 94.2 0.3 1E-05 44.3 10.6 18 129-146 51-70 (412)
169 3hu3_A Transitional endoplasmi 94.1 0.34 1.1E-05 45.6 10.8 42 239-280 299-350 (489)
170 1hqc_A RUVB; extended AAA-ATPa 93.9 0.19 6.5E-06 44.1 8.4 19 128-146 38-56 (324)
171 3hjh_A Transcription-repair-co 93.9 0.29 9.9E-06 45.9 9.9 52 127-187 13-64 (483)
172 2zts_A Putative uncharacterize 93.7 0.034 1.2E-06 46.8 3.0 52 127-184 29-80 (251)
173 3hr8_A Protein RECA; alpha and 93.7 0.25 8.5E-06 44.4 8.7 41 128-174 61-101 (356)
174 3co5_A Putative two-component 93.7 0.057 1.9E-06 41.6 3.9 22 124-145 23-44 (143)
175 1vma_A Cell division protein F 93.6 2 6.7E-05 37.6 14.2 18 130-147 106-123 (306)
176 1t5i_A C_terminal domain of A 93.5 1.3 4.4E-05 34.9 11.9 73 162-245 31-107 (172)
177 2zr9_A Protein RECA, recombina 93.4 0.41 1.4E-05 42.8 9.7 39 127-171 60-98 (349)
178 1qvr_A CLPB protein; coiled co 93.4 0.13 4.6E-06 51.9 7.2 19 129-147 192-210 (854)
179 1nlf_A Regulatory protein REPA 93.4 0.32 1.1E-05 41.8 8.8 26 125-150 27-52 (279)
180 1pzn_A RAD51, DNA repair and r 93.4 0.29 9.8E-06 43.9 8.6 43 128-170 131-173 (349)
181 3n70_A Transport activator; si 93.3 0.068 2.3E-06 41.2 3.8 20 126-145 22-41 (145)
182 2fna_A Conserved hypothetical 93.2 3.3 0.00011 36.3 15.5 52 220-277 124-178 (357)
183 4a74_A DNA repair and recombin 93.2 0.4 1.4E-05 39.5 8.8 21 127-147 24-44 (231)
184 2px0_A Flagellar biosynthesis 93.0 0.15 5.1E-06 44.6 5.9 21 127-147 104-124 (296)
185 2ffh_A Protein (FFH); SRP54, s 92.8 1.6 5.4E-05 40.1 12.8 44 128-177 98-143 (425)
186 1cr0_A DNA primase/helicase; R 92.8 0.22 7.6E-06 43.2 6.8 39 127-170 34-72 (296)
187 3pxi_A Negative regulator of g 92.7 0.44 1.5E-05 47.4 9.6 17 130-146 523-539 (758)
188 3i5x_A ATP-dependent RNA helic 92.1 1.8 6.2E-05 41.1 12.8 78 161-246 338-419 (563)
189 1j8m_F SRP54, signal recogniti 91.9 1.7 5.9E-05 37.8 11.4 20 128-147 98-117 (297)
190 3pey_A ATP-dependent RNA helic 91.7 0.91 3.1E-05 40.6 9.8 77 161-248 242-322 (395)
191 2i4i_A ATP-dependent RNA helic 91.6 1.1 3.7E-05 40.5 10.3 72 161-243 275-350 (417)
192 4b4t_M 26S protease regulatory 91.5 0.068 2.3E-06 49.4 1.9 53 90-145 177-232 (434)
193 2jgn_A DBX, DDX3, ATP-dependen 91.5 0.47 1.6E-05 38.1 6.8 72 161-243 45-120 (185)
194 3i32_A Heat resistant RNA depe 91.4 1.3 4.3E-05 38.7 10.0 71 162-243 28-102 (300)
195 3fht_A ATP-dependent RNA helic 91.1 1.6 5.5E-05 39.2 10.9 72 162-244 266-341 (412)
196 3sqw_A ATP-dependent RNA helic 91.1 2.7 9.1E-05 40.2 12.8 78 162-247 288-369 (579)
197 1yks_A Genome polyprotein [con 91.0 0.39 1.3E-05 44.4 6.6 69 162-242 177-245 (440)
198 2xxa_A Signal recognition part 91.0 2.4 8.2E-05 39.0 11.9 44 129-177 101-146 (433)
199 3bgw_A DNAB-like replicative h 90.8 0.43 1.5E-05 44.2 6.7 38 127-170 196-233 (444)
200 2qgz_A Helicase loader, putati 90.7 0.44 1.5E-05 41.8 6.4 20 128-147 152-171 (308)
201 1ypw_A Transitional endoplasmi 90.7 1.2 4.1E-05 44.6 10.3 19 127-145 237-255 (806)
202 2v6i_A RNA helicase; membrane, 90.5 0.69 2.4E-05 42.6 7.8 68 162-241 171-238 (431)
203 2d7d_A Uvrabc system protein B 90.5 4.7 0.00016 39.3 14.1 77 162-249 445-525 (661)
204 3e70_C DPA, signal recognition 90.5 1.5 5.2E-05 38.7 9.7 18 128-145 129-146 (328)
205 3cf2_A TER ATPase, transitiona 90.4 0.6 2.1E-05 46.5 7.6 17 129-145 239-255 (806)
206 3cmw_A Protein RECA, recombina 90.1 0.49 1.7E-05 50.9 7.1 123 128-282 1431-1571(1706)
207 1w36_B RECB, exodeoxyribonucle 90.1 0.68 2.3E-05 48.5 8.2 58 129-186 17-80 (1180)
208 1e9r_A Conjugal transfer prote 89.9 0.33 1.1E-05 44.7 5.1 19 127-145 52-70 (437)
209 3cmu_A Protein RECA, recombina 89.6 1.2 4.3E-05 48.6 9.7 46 127-179 1080-1125(2050)
210 2l8b_A Protein TRAI, DNA helic 89.6 0.52 1.8E-05 37.8 5.2 58 115-177 36-95 (189)
211 3io5_A Recombination and repai 89.2 0.65 2.2E-05 40.9 6.1 41 130-174 30-70 (333)
212 2wv9_A Flavivirin protease NS2 89.2 0.73 2.5E-05 45.1 7.1 69 162-242 410-478 (673)
213 1q57_A DNA primase/helicase; d 89.1 0.59 2E-05 44.0 6.3 50 127-182 241-290 (503)
214 2v3c_C SRP54, signal recogniti 89.1 1.1 3.7E-05 41.4 7.8 19 129-147 100-118 (432)
215 1hv8_A Putative ATP-dependent 89.0 1.4 4.7E-05 38.9 8.4 74 161-245 237-314 (367)
216 2db3_A ATP-dependent RNA helic 88.9 2.5 8.6E-05 38.7 10.3 69 164-243 302-374 (434)
217 2j0s_A ATP-dependent RNA helic 88.9 4.6 0.00016 36.3 12.0 72 162-244 276-351 (410)
218 1ofh_A ATP-dependent HSL prote 88.9 0.83 2.9E-05 39.5 6.7 20 127-146 49-68 (310)
219 2v1x_A ATP-dependent DNA helic 88.8 1.7 5.7E-05 41.9 9.3 72 161-243 266-341 (591)
220 3b85_A Phosphate starvation-in 88.7 0.54 1.8E-05 38.7 5.0 31 115-145 9-39 (208)
221 2oap_1 GSPE-2, type II secreti 88.7 0.5 1.7E-05 44.6 5.4 41 103-145 236-277 (511)
222 1u0j_A DNA replication protein 88.6 0.99 3.4E-05 38.6 6.7 45 99-146 72-122 (267)
223 1oyw_A RECQ helicase, ATP-depe 88.6 1.8 6.2E-05 40.9 9.3 72 162-244 236-311 (523)
224 3nbx_X ATPase RAVA; AAA+ ATPas 88.4 0.61 2.1E-05 43.9 5.8 29 117-145 30-58 (500)
225 1s2m_A Putative ATP-dependent 88.4 1.9 6.4E-05 38.7 9.0 72 162-244 258-333 (400)
226 4ag6_A VIRB4 ATPase, type IV s 88.3 0.5 1.7E-05 42.8 5.1 43 237-279 262-308 (392)
227 1xti_A Probable ATP-dependent 88.3 1.8 6.2E-05 38.6 8.8 76 161-247 249-328 (391)
228 2bjv_A PSP operon transcriptio 88.1 0.37 1.3E-05 41.0 3.8 20 126-145 27-46 (265)
229 1c4o_A DNA nucleotide excision 88.1 14 0.00049 35.8 15.5 77 162-249 439-519 (664)
230 1kgd_A CASK, peripheral plasma 87.9 0.31 1E-05 38.9 2.9 20 127-146 4-23 (180)
231 3hws_A ATP-dependent CLP prote 87.8 0.71 2.4E-05 41.3 5.6 19 127-145 50-68 (363)
232 3cf0_A Transitional endoplasmi 87.7 0.15 5.1E-06 44.6 1.0 53 91-146 12-67 (301)
233 3jvv_A Twitching mobility prot 87.6 0.65 2.2E-05 41.6 5.2 19 127-145 122-140 (356)
234 2oca_A DAR protein, ATP-depend 87.3 4.8 0.00016 37.5 11.3 76 162-247 347-426 (510)
235 1lv7_A FTSH; alpha/beta domain 87.2 0.73 2.5E-05 38.9 5.1 53 91-146 9-63 (257)
236 1qhx_A CPT, protein (chloramph 87.2 0.27 9.3E-06 38.9 2.3 19 128-146 3-21 (178)
237 1lvg_A Guanylate kinase, GMP k 87.1 0.38 1.3E-05 39.1 3.1 20 127-146 3-22 (198)
238 2r44_A Uncharacterized protein 87.1 0.28 9.7E-06 43.3 2.5 24 122-145 40-63 (331)
239 3cmw_A Protein RECA, recombina 87.0 0.78 2.7E-05 49.4 6.1 40 127-172 33-72 (1706)
240 2jlq_A Serine protease subunit 87.0 1.3 4.4E-05 41.0 7.1 69 162-242 188-256 (451)
241 4b4t_L 26S protease subunit RP 87.0 0.38 1.3E-05 44.4 3.3 53 91-146 178-233 (437)
242 1ex7_A Guanylate kinase; subst 86.9 0.31 1.1E-05 39.4 2.5 17 129-145 2-18 (186)
243 2xau_A PRE-mRNA-splicing facto 86.9 1.5 5.3E-05 43.6 7.9 75 162-243 303-393 (773)
244 3iij_A Coilin-interacting nucl 86.8 0.22 7.4E-06 39.7 1.5 22 126-147 9-30 (180)
245 2qor_A Guanylate kinase; phosp 86.7 0.26 9E-06 40.2 1.9 22 125-146 9-30 (204)
246 4b4t_H 26S protease regulatory 86.7 0.23 7.7E-06 46.1 1.7 52 91-145 206-260 (467)
247 2eyq_A TRCF, transcription-rep 86.7 1.6 5.4E-05 45.6 8.1 79 161-248 811-893 (1151)
248 4b4t_K 26S protease regulatory 86.6 0.19 6.7E-06 46.2 1.2 53 91-146 169-224 (428)
249 3vaa_A Shikimate kinase, SK; s 86.5 0.43 1.5E-05 38.7 3.1 21 127-147 24-44 (199)
250 2gza_A Type IV secretion syste 86.3 0.48 1.6E-05 42.6 3.6 21 125-145 172-192 (361)
251 3trf_A Shikimate kinase, SK; a 86.3 0.33 1.1E-05 38.6 2.3 20 128-147 5-24 (185)
252 3tau_A Guanylate kinase, GMP k 86.1 0.45 1.5E-05 38.9 3.1 20 127-146 7-26 (208)
253 3lw7_A Adenylate kinase relate 86.1 0.33 1.1E-05 37.9 2.2 18 130-147 3-20 (179)
254 2j37_W Signal recognition part 86.0 16 0.00055 34.2 14.0 40 130-175 103-144 (504)
255 1kag_A SKI, shikimate kinase I 85.8 0.42 1.5E-05 37.5 2.7 18 128-145 4-21 (173)
256 2r2a_A Uncharacterized protein 85.7 0.52 1.8E-05 38.5 3.2 22 130-151 7-28 (199)
257 2eyu_A Twitching motility prot 85.6 0.41 1.4E-05 40.9 2.6 20 126-145 23-42 (261)
258 4b4t_I 26S protease regulatory 85.5 0.51 1.7E-05 43.3 3.3 52 91-145 179-233 (437)
259 2qmh_A HPR kinase/phosphorylas 85.4 0.44 1.5E-05 38.9 2.6 19 127-145 33-51 (205)
260 3a8t_A Adenylate isopentenyltr 85.4 0.42 1.4E-05 42.5 2.6 19 129-147 41-59 (339)
261 2whx_A Serine protease/ntpase/ 85.2 2.4 8.2E-05 41.0 8.1 69 162-242 355-423 (618)
262 3ney_A 55 kDa erythrocyte memb 85.1 0.53 1.8E-05 38.4 3.0 21 126-146 17-37 (197)
263 1tue_A Replication protein E1; 85.1 0.89 3E-05 37.3 4.3 51 100-153 28-82 (212)
264 1kht_A Adenylate kinase; phosp 85.1 0.41 1.4E-05 38.2 2.3 19 128-146 3-21 (192)
265 3exa_A TRNA delta(2)-isopenten 85.1 0.44 1.5E-05 41.9 2.6 19 129-147 4-22 (322)
266 1wp9_A ATP-dependent RNA helic 84.7 4.5 0.00015 36.9 9.6 74 162-246 361-446 (494)
267 1ojl_A Transcriptional regulat 84.6 0.62 2.1E-05 40.7 3.4 19 127-145 24-42 (304)
268 3foz_A TRNA delta(2)-isopenten 84.6 0.53 1.8E-05 41.3 2.9 18 130-147 12-29 (316)
269 2j41_A Guanylate kinase; GMP, 84.5 0.57 1.9E-05 37.9 3.0 21 126-146 4-24 (207)
270 2yjt_D ATP-dependent RNA helic 84.9 0.19 6.5E-06 39.8 0.0 73 162-245 30-106 (170)
271 2yhs_A FTSY, cell division pro 84.4 5.6 0.00019 37.2 9.9 17 130-146 295-311 (503)
272 1y63_A LMAJ004144AAA protein; 84.4 0.48 1.7E-05 37.9 2.4 20 127-146 9-28 (184)
273 2ze6_A Isopentenyl transferase 84.4 0.55 1.9E-05 39.8 2.9 18 130-147 3-20 (253)
274 3tr0_A Guanylate kinase, GMP k 84.3 0.59 2E-05 37.8 2.9 20 127-146 6-25 (205)
275 3uk6_A RUVB-like 2; hexameric 84.3 0.53 1.8E-05 42.1 2.9 20 128-147 70-89 (368)
276 1ly1_A Polynucleotide kinase; 84.1 0.46 1.6E-05 37.4 2.2 17 130-146 4-20 (181)
277 1zp6_A Hypothetical protein AT 84.1 0.39 1.3E-05 38.4 1.7 19 127-145 8-26 (191)
278 1p9r_A General secretion pathw 84.1 0.95 3.2E-05 41.5 4.5 28 118-145 155-184 (418)
279 3lda_A DNA repair protein RAD5 83.9 0.82 2.8E-05 41.7 4.0 44 128-171 178-221 (400)
280 2r8r_A Sensor protein; KDPD, P 83.6 1.5 5.1E-05 36.5 5.1 26 127-152 4-30 (228)
281 3a00_A Guanylate kinase, GMP k 83.5 0.76 2.6E-05 36.8 3.3 17 129-145 2-18 (186)
282 3cm0_A Adenylate kinase; ATP-b 83.5 0.38 1.3E-05 38.3 1.4 21 127-147 3-23 (186)
283 2pt7_A CAG-ALFA; ATPase, prote 83.4 0.62 2.1E-05 41.3 2.9 20 125-144 168-187 (330)
284 3kb2_A SPBC2 prophage-derived 83.3 0.52 1.8E-05 36.8 2.2 18 130-147 3-20 (173)
285 1u94_A RECA protein, recombina 83.3 1.3 4.5E-05 39.6 5.0 39 127-171 62-100 (356)
286 3t15_A Ribulose bisphosphate c 83.2 0.46 1.6E-05 41.3 2.0 18 129-146 37-54 (293)
287 2ius_A DNA translocase FTSK; n 83.2 1.7 5.9E-05 40.9 5.9 27 128-154 167-193 (512)
288 1s96_A Guanylate kinase, GMP k 82.7 0.79 2.7E-05 38.0 3.1 22 125-146 13-34 (219)
289 2iut_A DNA translocase FTSK; n 82.5 1.8 6.1E-05 41.3 5.7 41 129-171 215-255 (574)
290 1tf7_A KAIC; homohexamer, hexa 82.4 6.7 0.00023 36.9 9.9 125 127-278 280-417 (525)
291 1z6g_A Guanylate kinase; struc 82.4 0.92 3.2E-05 37.4 3.4 20 126-145 21-40 (218)
292 4gp7_A Metallophosphoesterase; 82.4 0.53 1.8E-05 37.2 1.9 20 127-146 8-27 (171)
293 3tbk_A RIG-I helicase domain; 82.1 4.4 0.00015 37.9 8.5 77 162-245 389-478 (555)
294 4eun_A Thermoresistant glucoki 82.1 0.66 2.3E-05 37.6 2.4 20 127-146 28-47 (200)
295 3crm_A TRNA delta(2)-isopenten 81.9 0.77 2.6E-05 40.5 2.9 19 129-147 6-24 (323)
296 1um8_A ATP-dependent CLP prote 81.8 3.4 0.00012 36.9 7.3 19 128-146 72-90 (376)
297 2ewv_A Twitching motility prot 81.7 0.69 2.3E-05 41.8 2.5 20 126-145 134-153 (372)
298 1knq_A Gluconate kinase; ALFA/ 81.6 0.59 2E-05 36.8 1.9 20 128-147 8-27 (175)
299 2c95_A Adenylate kinase 1; tra 81.6 0.71 2.4E-05 36.9 2.4 22 126-147 7-28 (196)
300 2z0m_A 337AA long hypothetical 81.3 4.1 0.00014 35.3 7.5 70 161-245 219-292 (337)
301 2c9o_A RUVB-like 1; hexameric 81.1 0.84 2.9E-05 42.4 3.0 20 128-147 63-82 (456)
302 2r62_A Cell division protease 80.7 0.41 1.4E-05 40.7 0.6 19 128-146 44-62 (268)
303 4fcw_A Chaperone protein CLPB; 80.7 0.81 2.8E-05 39.7 2.6 18 129-146 48-65 (311)
304 3d3q_A TRNA delta(2)-isopenten 80.7 0.91 3.1E-05 40.4 2.9 18 130-147 9-26 (340)
305 1tev_A UMP-CMP kinase; ploop, 80.7 0.64 2.2E-05 37.1 1.8 20 128-147 3-22 (196)
306 3t61_A Gluconokinase; PSI-biol 80.6 0.74 2.5E-05 37.2 2.2 19 129-147 19-37 (202)
307 4gl2_A Interferon-induced heli 80.6 2.8 9.7E-05 40.9 6.8 105 162-277 400-518 (699)
308 2bwj_A Adenylate kinase 5; pho 80.6 0.79 2.7E-05 36.8 2.3 20 127-146 11-30 (199)
309 3nwj_A ATSK2; P loop, shikimat 80.4 1.3 4.3E-05 37.6 3.6 23 125-147 45-67 (250)
310 3vkg_A Dynein heavy chain, cyt 80.4 3.9 0.00013 46.9 8.3 50 98-147 873-925 (3245)
311 2v54_A DTMP kinase, thymidylat 80.3 0.63 2.2E-05 37.6 1.7 20 127-146 3-22 (204)
312 2rhm_A Putative kinase; P-loop 80.3 0.67 2.3E-05 37.0 1.8 20 128-147 5-24 (193)
313 3u4q_B ATP-dependent helicase/ 80.0 1.5 5.2E-05 45.8 4.8 39 132-173 5-43 (1166)
314 1gvn_B Zeta; postsegregational 80.0 0.76 2.6E-05 39.8 2.2 18 129-146 34-51 (287)
315 3d8b_A Fidgetin-like protein 1 79.8 1 3.4E-05 40.3 3.0 19 128-146 117-135 (357)
316 2plr_A DTMP kinase, probable t 79.4 0.73 2.5E-05 37.4 1.7 21 127-147 3-23 (213)
317 1zd8_A GTP:AMP phosphotransfer 79.3 0.85 2.9E-05 37.7 2.2 19 128-146 7-25 (227)
318 1znw_A Guanylate kinase, GMP k 79.1 1.3 4.3E-05 36.1 3.1 22 124-145 16-37 (207)
319 2bdt_A BH3686; alpha-beta prot 79.1 0.91 3.1E-05 36.2 2.2 19 129-147 3-21 (189)
320 1via_A Shikimate kinase; struc 78.9 1 3.5E-05 35.4 2.4 18 130-147 6-23 (175)
321 1ixz_A ATP-dependent metallopr 78.7 1.2 4E-05 37.5 2.9 52 91-145 13-66 (254)
322 1g8p_A Magnesium-chelatase 38 78.6 0.64 2.2E-05 41.1 1.2 18 128-145 45-62 (350)
323 2iyv_A Shikimate kinase, SK; t 78.6 1.1 3.9E-05 35.4 2.6 18 129-146 3-20 (184)
324 3eph_A TRNA isopentenyltransfe 78.6 1.1 3.7E-05 40.9 2.7 18 130-147 4-21 (409)
325 1nks_A Adenylate kinase; therm 78.5 0.9 3.1E-05 36.1 2.1 18 130-147 3-20 (194)
326 4a2w_A RIG-I, retinoic acid in 78.5 3.9 0.00013 41.7 7.1 79 161-246 630-721 (936)
327 1f2t_A RAD50 ABC-ATPase; DNA d 78.5 1 3.4E-05 34.8 2.2 16 130-145 25-40 (149)
328 4dzz_A Plasmid partitioning pr 78.4 5.4 0.00018 31.8 6.8 31 133-169 7-37 (206)
329 1m7g_A Adenylylsulfate kinase; 78.4 1.1 3.6E-05 36.7 2.5 31 115-146 13-43 (211)
330 3fb4_A Adenylate kinase; psych 78.3 0.97 3.3E-05 36.9 2.2 18 130-147 2-19 (216)
331 2z83_A Helicase/nucleoside tri 78.3 1.6 5.6E-05 40.4 4.0 69 162-242 190-258 (459)
332 1in4_A RUVB, holliday junction 78.3 1.3 4.4E-05 39.2 3.2 19 129-147 52-70 (334)
333 2va8_A SSO2462, SKI2-type heli 78.3 7.6 0.00026 38.0 9.0 76 162-244 252-363 (715)
334 2cdn_A Adenylate kinase; phosp 78.1 0.71 2.4E-05 37.3 1.3 19 129-147 21-39 (201)
335 1zuh_A Shikimate kinase; alpha 78.1 1 3.4E-05 35.2 2.2 19 129-147 8-26 (168)
336 1aky_A Adenylate kinase; ATP:A 77.6 1.1 3.8E-05 36.7 2.4 20 128-147 4-23 (220)
337 3uie_A Adenylyl-sulfate kinase 77.6 1.2 4.2E-05 35.9 2.6 20 127-146 24-43 (200)
338 1zak_A Adenylate kinase; ATP:A 77.6 1.2 4E-05 36.6 2.5 20 128-147 5-24 (222)
339 1e6c_A Shikimate kinase; phosp 77.5 1.2 4.1E-05 34.8 2.4 19 129-147 3-21 (173)
340 1rj9_A FTSY, signal recognitio 77.5 2.8 9.6E-05 36.5 5.1 19 128-146 102-120 (304)
341 2x8a_A Nuclear valosin-contain 77.5 1 3.5E-05 38.7 2.2 52 91-145 7-61 (274)
342 3dl0_A Adenylate kinase; phosp 77.4 1.1 3.7E-05 36.7 2.2 18 130-147 2-19 (216)
343 1qf9_A UMP/CMP kinase, protein 77.2 1.1 3.6E-05 35.7 2.1 18 130-147 8-25 (194)
344 3lnc_A Guanylate kinase, GMP k 77.2 1.1 3.8E-05 37.1 2.3 20 127-146 26-45 (231)
345 1ak2_A Adenylate kinase isoenz 77.2 1.4 4.8E-05 36.6 2.9 21 127-147 15-35 (233)
346 4a2p_A RIG-I, retinoic acid in 76.8 3.9 0.00013 38.4 6.3 78 162-246 390-480 (556)
347 3qf7_A RAD50; ABC-ATPase, ATPa 76.8 1.1 3.7E-05 40.3 2.2 16 130-145 25-40 (365)
348 3eiq_A Eukaryotic initiation f 76.6 1.9 6.5E-05 38.8 3.9 72 162-244 280-355 (414)
349 4akg_A Glutathione S-transfera 76.6 3 0.0001 47.2 6.0 50 98-147 890-942 (2695)
350 4a2q_A RIG-I, retinoic acid in 76.6 4 0.00014 40.7 6.5 78 162-246 631-721 (797)
351 3nwn_A Kinesin-like protein KI 76.3 1.8 6.3E-05 38.7 3.5 25 121-145 96-122 (359)
352 1ukz_A Uridylate kinase; trans 76.2 1.2 4.2E-05 35.9 2.2 16 130-145 17-32 (203)
353 3oiy_A Reverse gyrase helicase 76.1 3.6 0.00012 37.2 5.6 72 162-246 252-329 (414)
354 1bg2_A Kinesin; motor protein, 76.1 2 6.8E-05 37.9 3.7 25 121-145 69-95 (325)
355 2pez_A Bifunctional 3'-phospho 76.1 1.1 3.8E-05 35.4 1.9 20 127-146 4-23 (179)
356 2vli_A Antibiotic resistance p 76.0 1 3.6E-05 35.5 1.7 20 128-147 5-24 (183)
357 2yvu_A Probable adenylyl-sulfa 75.9 1.1 3.9E-05 35.6 1.9 20 128-147 13-32 (186)
358 2wwf_A Thymidilate kinase, put 75.9 1.3 4.3E-05 35.9 2.3 21 127-147 9-29 (212)
359 1nn5_A Similar to deoxythymidy 75.9 1.2 4.2E-05 36.1 2.1 21 127-147 8-28 (215)
360 3a4m_A L-seryl-tRNA(SEC) kinas 75.6 1.2 4.2E-05 37.7 2.2 19 129-147 5-23 (260)
361 1g41_A Heat shock protein HSLU 75.5 6.1 0.00021 36.4 6.9 18 128-145 50-67 (444)
362 1ye8_A Protein THEP1, hypothet 75.5 1.7 5.9E-05 34.6 2.9 16 130-145 2-17 (178)
363 3pxg_A Negative regulator of g 75.5 1.8 6.1E-05 40.3 3.4 20 128-147 201-220 (468)
364 2pt5_A Shikimate kinase, SK; a 75.4 1.3 4.6E-05 34.3 2.2 18 130-147 2-19 (168)
365 1iy2_A ATP-dependent metallopr 75.3 1.6 5.6E-05 37.3 2.9 53 90-145 36-90 (278)
366 3kta_A Chromosome segregation 75.1 1.8 6.1E-05 34.1 2.9 16 130-145 28-43 (182)
367 4etp_A Kinesin-like protein KA 75.1 2 6.8E-05 39.1 3.5 25 121-145 132-158 (403)
368 2jaq_A Deoxyguanosine kinase; 75.0 1.4 4.6E-05 35.4 2.2 18 130-147 2-19 (205)
369 1zu4_A FTSY; GTPase, signal re 74.9 3.1 0.00011 36.6 4.6 18 129-146 106-123 (320)
370 1v8k_A Kinesin-like protein KI 74.9 2.2 7.6E-05 38.9 3.7 24 122-145 147-172 (410)
371 3f9v_A Minichromosome maintena 74.6 1.4 4.7E-05 42.5 2.4 16 130-145 329-344 (595)
372 2if2_A Dephospho-COA kinase; a 74.6 1.3 4.6E-05 35.7 2.1 17 130-146 3-19 (204)
373 2pbr_A DTMP kinase, thymidylat 74.5 1.4 4.9E-05 35.0 2.2 17 131-147 3-19 (195)
374 3rc3_A ATP-dependent RNA helic 74.5 11 0.00038 36.8 8.8 73 165-249 323-401 (677)
375 3sr0_A Adenylate kinase; phosp 74.5 1.9 6.4E-05 35.3 2.9 17 131-147 3-19 (206)
376 2y65_A Kinesin, kinesin heavy 74.5 2.3 7.8E-05 38.2 3.7 24 122-145 77-102 (365)
377 3c8u_A Fructokinase; YP_612366 74.4 1.7 5.7E-05 35.4 2.6 18 128-145 22-39 (208)
378 3dc4_A Kinesin-like protein NO 74.4 2 6.8E-05 38.2 3.2 24 122-145 87-112 (344)
379 1jjv_A Dephospho-COA kinase; P 74.2 1.5 5E-05 35.5 2.2 17 130-146 4-20 (206)
380 2i3b_A HCR-ntpase, human cance 74.1 2.3 7.7E-05 34.3 3.3 41 235-278 103-145 (189)
381 2vvg_A Kinesin-2; motor protei 74.1 2.4 8.1E-05 37.8 3.7 24 122-145 82-107 (350)
382 2h58_A Kinesin-like protein KI 74.0 2.4 8.3E-05 37.5 3.7 25 121-145 72-98 (330)
383 3tlx_A Adenylate kinase 2; str 73.9 2 6.9E-05 36.0 3.1 20 128-147 29-48 (243)
384 1cke_A CK, MSSA, protein (cyti 73.9 1.9 6.5E-05 35.3 2.9 19 129-147 6-24 (227)
385 2zj8_A DNA helicase, putative 73.9 9.2 0.00031 37.5 8.2 77 162-246 237-346 (720)
386 3b6u_A Kinesin-like protein KI 73.8 2.3 7.9E-05 38.2 3.5 24 122-145 94-119 (372)
387 2bbw_A Adenylate kinase 4, AK4 73.8 1.5 5E-05 36.8 2.2 19 128-146 27-45 (246)
388 1goj_A Kinesin, kinesin heavy 73.8 2.3 8E-05 38.0 3.6 24 122-145 73-98 (355)
389 2z0h_A DTMP kinase, thymidylat 73.8 1.5 5.2E-05 34.9 2.2 17 131-147 3-19 (197)
390 1e4v_A Adenylate kinase; trans 73.7 1.5 5E-05 35.9 2.1 18 130-147 2-19 (214)
391 1t5c_A CENP-E protein, centrom 73.7 2.3 8E-05 37.9 3.5 25 121-145 69-95 (349)
392 3k1j_A LON protease, ATP-depen 73.7 3.1 0.0001 40.1 4.6 24 122-145 54-77 (604)
393 3cf2_A TER ATPase, transitiona 73.7 1.6 5.5E-05 43.5 2.7 54 89-145 472-528 (806)
394 3cob_A Kinesin heavy chain-lik 73.6 2.1 7.2E-05 38.5 3.2 25 121-145 71-97 (369)
395 4a14_A Kinesin, kinesin-like p 73.5 2.5 8.5E-05 37.6 3.7 24 122-145 76-101 (344)
396 3u06_A Protein claret segregat 73.5 2.2 7.5E-05 39.0 3.3 25 121-145 130-156 (412)
397 1x88_A Kinesin-like protein KI 73.5 2.4 8.1E-05 38.0 3.5 25 121-145 80-106 (359)
398 3o8b_A HCV NS3 protease/helica 73.5 3.2 0.00011 40.4 4.6 66 162-242 396-461 (666)
399 2zfi_A Kinesin-like protein KI 73.5 2.5 8.5E-05 38.0 3.7 25 121-145 81-107 (366)
400 3t0q_A AGR253WP; kinesin, alph 73.3 2.2 7.6E-05 38.0 3.3 25 121-145 77-103 (349)
401 3auy_A DNA double-strand break 73.3 1.4 4.8E-05 39.6 2.1 15 131-145 28-42 (371)
402 3be4_A Adenylate kinase; malar 73.3 1.6 5.3E-05 35.8 2.2 20 128-147 5-24 (217)
403 2ykg_A Probable ATP-dependent 73.2 3.2 0.00011 40.5 4.7 79 161-246 397-488 (696)
404 3lre_A Kinesin-like protein KI 73.2 2.4 8.3E-05 37.8 3.5 24 122-145 98-123 (355)
405 3umf_A Adenylate kinase; rossm 73.2 2.1 7.2E-05 35.4 2.9 20 128-147 29-48 (217)
406 3gbj_A KIF13B protein; kinesin 73.1 2.5 8.4E-05 37.8 3.5 25 121-145 84-110 (354)
407 2nr8_A Kinesin-like protein KI 72.9 2.5 8.6E-05 37.8 3.5 25 121-145 95-121 (358)
408 2xb4_A Adenylate kinase; ATP-b 72.9 1.6 5.5E-05 36.0 2.2 18 130-147 2-19 (223)
409 2heh_A KIF2C protein; kinesin, 72.6 2.7 9.1E-05 38.0 3.6 24 122-145 127-152 (387)
410 4anj_A Unconventional myosin-V 72.5 4.3 0.00015 41.6 5.5 64 84-147 91-163 (1052)
411 3b9q_A Chloroplast SRP recepto 72.5 3 0.0001 36.3 3.9 19 128-146 100-118 (302)
412 2qt1_A Nicotinamide riboside k 72.5 2.1 7.2E-05 34.6 2.8 20 127-146 20-39 (207)
413 3tif_A Uncharacterized ABC tra 72.5 1.8 6.2E-05 36.1 2.4 32 235-266 161-192 (235)
414 2ce7_A Cell division protein F 72.3 1.6 5.3E-05 40.8 2.1 53 91-146 13-67 (476)
415 3asz_A Uridine kinase; cytidin 72.3 1.9 6.6E-05 34.9 2.5 18 128-145 6-23 (211)
416 3bfn_A Kinesin-like protein KI 71.8 2.3 7.9E-05 38.4 3.1 23 123-145 92-116 (388)
417 1lkx_A Myosin IE heavy chain; 71.4 3.7 0.00013 40.2 4.6 64 83-146 41-112 (697)
418 2p5t_B PEZT; postsegregational 71.3 1.2 4E-05 37.7 1.0 18 129-146 33-50 (253)
419 3qks_A DNA double-strand break 71.3 1.9 6.4E-05 35.1 2.2 16 130-145 25-40 (203)
420 1ry6_A Internal kinesin; kines 71.2 2.8 9.4E-05 37.6 3.4 19 127-145 82-102 (360)
421 2wbe_C Bipolar kinesin KRP-130 71.1 2.6 8.9E-05 37.9 3.2 24 122-145 93-118 (373)
422 3pxi_A Negative regulator of g 71.0 2.6 9E-05 41.8 3.6 19 128-146 201-219 (758)
423 2v9p_A Replication protein E1; 71.0 2.5 8.5E-05 36.9 3.0 19 127-145 125-143 (305)
424 2vhj_A Ntpase P4, P4; non- hyd 70.7 2.4 8.2E-05 37.4 2.8 24 127-150 122-145 (331)
425 1f9v_A Kinesin-like protein KA 70.4 2.1 7.1E-05 38.2 2.4 25 121-145 76-102 (347)
426 3m6a_A ATP-dependent protease 70.3 1.9 6.6E-05 40.9 2.3 19 127-145 107-125 (543)
427 1vht_A Dephospho-COA kinase; s 70.1 2 7E-05 35.0 2.2 18 129-146 5-22 (218)
428 3fmp_B ATP-dependent RNA helic 70.1 0.91 3.1E-05 42.2 0.0 70 162-242 333-406 (479)
429 2p6r_A Afuhel308 helicase; pro 70.1 7.5 0.00026 38.0 6.6 75 162-243 242-346 (702)
430 2owm_A Nckin3-434, related to 69.9 3.3 0.00011 38.2 3.7 24 122-145 129-154 (443)
431 2cbz_A Multidrug resistance-as 69.9 2.3 7.7E-05 35.6 2.4 27 236-262 144-170 (237)
432 1nij_A Hypothetical protein YJ 69.8 2.9 9.8E-05 36.7 3.2 37 237-276 151-187 (318)
433 4akg_A Glutathione S-transfera 69.5 1.9 6.6E-05 48.7 2.4 21 125-145 1264-1284(2695)
434 1uf9_A TT1252 protein; P-loop, 69.4 2.7 9.1E-05 33.6 2.7 17 130-146 10-26 (203)
435 1sgw_A Putative ABC transporte 69.4 2.6 9E-05 34.6 2.7 31 235-265 149-179 (214)
436 3tqf_A HPR(Ser) kinase; transf 69.3 2.5 8.7E-05 33.6 2.4 21 127-147 15-35 (181)
437 1ltq_A Polynucleotide kinase; 69.0 2.2 7.4E-05 36.8 2.2 17 130-146 4-20 (301)
438 4e22_A Cytidylate kinase; P-lo 68.4 3.1 0.00011 35.0 3.1 21 127-147 26-46 (252)
439 2og2_A Putative signal recogni 68.3 4.1 0.00014 36.5 3.9 17 130-146 159-175 (359)
440 1rz3_A Hypothetical protein rb 68.0 3 0.0001 33.6 2.7 18 129-146 23-40 (201)
441 2pze_A Cystic fibrosis transme 68.0 2.6 8.9E-05 35.0 2.4 41 235-276 146-187 (229)
442 2rep_A Kinesin-like protein KI 67.7 2.8 9.6E-05 37.7 2.7 25 121-145 107-133 (376)
443 2grj_A Dephospho-COA kinase; T 67.6 2.6 8.7E-05 34.0 2.2 18 130-147 14-31 (192)
444 3qkt_A DNA double-strand break 67.6 2.4 8.1E-05 37.5 2.2 39 236-274 271-310 (339)
445 2ghi_A Transport protein; mult 67.4 2.7 9.2E-05 35.7 2.4 39 237-276 173-211 (260)
446 2ff7_A Alpha-hemolysin translo 66.9 2.8 9.6E-05 35.3 2.4 41 235-276 161-201 (247)
447 3gfo_A Cobalt import ATP-bindi 66.9 2.7 9.2E-05 36.1 2.3 31 235-265 159-189 (275)
448 2f1r_A Molybdopterin-guanine d 66.7 1.8 6.1E-05 34.3 1.1 17 130-146 4-20 (171)
449 2v26_A Myosin VI; calmodulin-b 66.5 7.9 0.00027 38.5 5.8 62 84-145 87-157 (784)
450 2pcj_A ABC transporter, lipopr 66.5 2.8 9.4E-05 34.7 2.2 41 235-275 156-196 (224)
451 3kta_B Chromosome segregation 66.4 7 0.00024 30.8 4.5 39 238-276 87-125 (173)
452 1g6h_A High-affinity branched- 66.3 2.9 0.0001 35.4 2.4 42 235-276 169-210 (257)
453 2dhr_A FTSH; AAA+ protein, hex 66.2 2.5 8.4E-05 39.7 2.1 17 129-145 65-81 (499)
454 1gtv_A TMK, thymidylate kinase 66.0 1.3 4.5E-05 35.9 0.1 16 131-146 3-18 (214)
455 1ji0_A ABC transporter; ATP bi 66.0 3 0.0001 34.9 2.4 41 235-275 155-195 (240)
456 4g1u_C Hemin import ATP-bindin 65.5 3.1 0.0001 35.5 2.4 39 237-275 165-204 (266)
457 3h1t_A Type I site-specific re 65.4 21 0.00071 33.9 8.6 80 161-247 438-527 (590)
458 1xjc_A MOBB protein homolog; s 65.1 4.1 0.00014 32.1 2.9 16 130-145 6-21 (169)
459 2f6r_A COA synthase, bifunctio 65.0 2.8 9.5E-05 36.0 2.1 18 130-147 77-94 (281)
460 1b0u_A Histidine permease; ABC 64.9 3.2 0.00011 35.3 2.4 41 235-275 169-209 (262)
461 1odf_A YGR205W, hypothetical 3 64.9 3.8 0.00013 35.4 2.9 16 130-145 33-48 (290)
462 1uj2_A Uridine-cytidine kinase 64.8 3 0.0001 35.0 2.2 17 130-146 24-40 (252)
463 1mv5_A LMRA, multidrug resista 64.8 2.7 9.1E-05 35.3 1.9 39 237-276 157-195 (243)
464 3ake_A Cytidylate kinase; CMP 64.6 3.1 0.00011 33.4 2.2 18 130-147 4-21 (208)
465 2qi9_C Vitamin B12 import ATP- 64.4 3.3 0.00011 34.9 2.4 37 240-276 154-190 (249)
466 1htw_A HI0065; nucleotide-bind 64.4 3.9 0.00013 31.7 2.6 19 127-145 32-50 (158)
467 3p32_A Probable GTPase RV1496/ 64.4 74 0.0025 27.9 12.4 18 130-147 81-98 (355)
468 4ddu_A Reverse gyrase; topoiso 64.0 14 0.00048 38.3 7.4 74 162-248 309-388 (1104)
469 2yz2_A Putative ABC transporte 64.0 3.4 0.00012 35.2 2.4 42 235-276 154-195 (266)
470 1np6_A Molybdopterin-guanine d 63.9 4.4 0.00015 32.1 2.9 17 129-145 7-23 (174)
471 2ixe_A Antigen peptide transpo 63.8 3.4 0.00012 35.3 2.4 42 235-276 172-214 (271)
472 1vpl_A ABC transporter, ATP-bi 63.8 3.5 0.00012 34.9 2.4 42 235-276 162-203 (256)
473 2nq2_C Hypothetical ABC transp 63.6 3.4 0.00012 34.9 2.3 42 235-276 144-186 (253)
474 3vkg_A Dynein heavy chain, cyt 63.6 3.3 0.00011 47.5 2.7 21 124-144 1300-1320(3245)
475 2d2e_A SUFC protein; ABC-ATPas 63.3 4.6 0.00016 33.9 3.1 40 237-276 161-200 (250)
476 2olj_A Amino acid ABC transpor 63.1 3.6 0.00012 35.0 2.4 42 235-276 175-216 (263)
477 3r20_A Cytidylate kinase; stru 63.0 3.5 0.00012 34.5 2.2 20 128-147 9-28 (233)
478 2zu0_C Probable ATP-dependent 62.9 4.7 0.00016 34.3 3.1 40 237-276 182-221 (267)
479 2ihy_A ABC transporter, ATP-bi 62.9 3.6 0.00012 35.3 2.4 31 235-265 177-207 (279)
480 2h92_A Cytidylate kinase; ross 62.9 4 0.00014 33.1 2.6 19 128-146 3-21 (219)
481 4eaq_A DTMP kinase, thymidylat 62.7 4.1 0.00014 33.8 2.6 20 127-146 25-44 (229)
482 1w9i_A Myosin II heavy chain; 62.7 10 0.00035 37.5 5.8 63 84-146 120-190 (770)
483 2vp4_A Deoxynucleoside kinase; 62.5 3.2 0.00011 34.3 1.9 18 128-145 20-37 (230)
484 1r6b_X CLPA protein; AAA+, N-t 62.5 4.2 0.00014 40.2 3.1 19 128-146 207-225 (758)
485 1svm_A Large T antigen; AAA+ f 62.4 4.7 0.00016 36.3 3.1 20 127-146 168-187 (377)
486 1q3t_A Cytidylate kinase; nucl 62.2 5.1 0.00017 33.1 3.1 21 127-147 15-35 (236)
487 2qen_A Walker-type ATPase; unk 62.1 6.2 0.00021 34.3 3.9 19 127-145 30-48 (350)
488 3nh6_A ATP-binding cassette SU 61.9 3.1 0.0001 36.4 1.7 39 236-275 207-245 (306)
489 2jeo_A Uridine-cytidine kinase 61.9 4.7 0.00016 33.6 2.9 19 128-146 25-43 (245)
490 1kk8_A Myosin heavy chain, str 61.3 11 0.00037 37.8 5.7 63 84-146 117-187 (837)
491 3zvl_A Bifunctional polynucleo 61.1 3.6 0.00012 37.5 2.2 17 130-146 260-276 (416)
492 1tf7_A KAIC; homohexamer, hexa 61.1 5.8 0.0002 37.4 3.6 28 127-154 38-65 (525)
493 1r6b_X CLPA protein; AAA+, N-t 60.7 3.4 0.00012 40.9 2.0 17 130-146 490-506 (758)
494 1w7j_A Myosin VA; motor protei 60.7 11 0.00039 37.3 5.7 64 84-147 104-175 (795)
495 4edh_A DTMP kinase, thymidylat 60.6 3.7 0.00013 33.7 1.9 22 126-147 4-25 (213)
496 4a15_A XPD helicase, ATP-depen 60.4 2.1 7.3E-05 41.4 0.5 41 211-251 174-218 (620)
497 4db1_A Myosin-7; S1DC, cardiac 60.4 12 0.00039 37.2 5.7 64 84-147 119-190 (783)
498 1z5z_A Helicase of the SNF2/RA 60.4 70 0.0024 26.9 10.1 96 136-247 92-193 (271)
499 2h57_A ADP-ribosylation factor 60.1 4 0.00014 32.2 2.0 16 129-144 22-37 (190)
500 3tqc_A Pantothenate kinase; bi 60.1 6.8 0.00023 34.4 3.7 15 131-145 95-109 (321)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.4e-42 Score=297.97 Aligned_cols=214 Identities=35% Similarity=0.489 Sum_probs=196.0
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC--CCCCCeeE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP--RDDQNTRV 165 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~~~~ 165 (337)
....+|.++++++.+++++.++||..|+++|.++++.++.|++++++||||||||++|++|++..+.... ....++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 4457899999999999999999999999999999999999999999999999999999999999986543 22347789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
||++||++|+.|+++.++.+....++.+..++|+.....+...+..+++|+|+||++|.+++.+. ...+.++++||+||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDE 184 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRTTYLVLDE 184 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCCcccccEEEEeC
Confidence 99999999999999999999999999999999999988888888888999999999999998764 56789999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
||+|++.+|...+..+++.+++.+|+++||||+++.+..++..++++|+.|.++..+
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999987643
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-41 Score=317.04 Aligned_cols=240 Identities=33% Similarity=0.536 Sum_probs=217.0
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC--CCCCeeEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--DDQNTRVL 166 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~l 166 (337)
...+|.+++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.++.... ...++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999876542 23477999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++|||+||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|++++.+. .+.+.++++||+|||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEA 212 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEETH
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEccH
Confidence 9999999999999999999988889999999999988888888888999999999999998764 567899999999999
Q ss_pred cccccccHHHHHHHHHHHc--CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHH
Q psy3143 247 DRMLDEHFASQMKEIIRLC--SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~ 324 (337)
|+|++.+|...+..++..+ +..+|+++||||+++.+..++..++.+|..+.+........++.|.++.+.. ..|.
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~ 289 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK---YAKR 289 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG---GGHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc---HHHH
Confidence 9999999999999999875 5788999999999999999999999999999998887788899999998876 4566
Q ss_pred HHHHHhhh
Q psy3143 325 NVLGLMLL 332 (337)
Q Consensus 325 ~~L~~ll~ 332 (337)
..|..+|.
T Consensus 290 ~~l~~~l~ 297 (434)
T 2db3_A 290 SKLIEILS 297 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666664
No 3
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=310.07 Aligned_cols=212 Identities=31% Similarity=0.464 Sum_probs=189.1
Q ss_pred CCCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC
Q psy3143 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDD 160 (337)
Q Consensus 83 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~ 160 (337)
++.|.....+|.+++|++.++++|..+||..|+++|.++||.++.| +|++++||||||||++|++|+++.+... .
T Consensus 84 ~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---~ 160 (300)
T 3fmo_B 84 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---N 160 (300)
T ss_dssp TTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---S
T ss_pred CCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---C
Confidence 3455667789999999999999999999999999999999999998 9999999999999999999999998532 2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
.++++|||+|||+||.|++..+..++.+. ++.+...+|+...... ....++|+||||++|++++.+.+.+.+++++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~ 237 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhce
Confidence 46789999999999999999999998765 6888888887764322 2456799999999999999876677899999
Q ss_pred EEEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 240 VLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 240 ~iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
+|||||||+|++ .+|...+..|++.+++.+|+++||||+++.+..++..++++|+.|.+..
T Consensus 238 ~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 999999999997 6899999999999999999999999999999999999999999998854
No 4
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.7e-41 Score=296.29 Aligned_cols=224 Identities=33% Similarity=0.529 Sum_probs=190.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC------CCC
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR------DDQ 161 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~------~~~ 161 (337)
....+|.+++|++.++++|..+|+..|+++|.++++.++.|+++++++|||||||++|++|+++.+..... ...
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 35578999999999999999999999999999999999999999999999999999999999999864431 123
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CCChhhCCEE
Confidence 578999999999999999999999988889999999998887777777788999999999999998764 5678999999
Q ss_pred EEecccccccccHHHHHHHHHHHc--CC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 242 VLDEADRMLDEHFASQMKEIIRLC--SR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 242 ViDEad~l~~~~~~~~~~~i~~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
|+||||++++.+|...+..++..+ +. ..|+++||||+++.+..++..++.+|..|.++.......+|+|++
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~~ 253 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceecC
Confidence 999999999999999999999854 33 679999999999999999999999999999988888888888864
No 5
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=292.58 Aligned_cols=208 Identities=45% Similarity=0.699 Sum_probs=192.3
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+++++++.++++|..+|+..|+++|.++++.++.|+++++++|||||||++|++|++..+.... .++++||+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~---~~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP---QRLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC---CSSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC---CCceEEEE
Confidence 346799999999999999999999999999999999999999999999999999999999999886543 35689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++|+.|+.+.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++.+.+.+.+..+++||+||||+
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 99999999999999999988899999999998887777777788999999999999998875567789999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
+++.+|...+..++..+++.+|+++||||+++.+.+++..++++|+.|.++
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999874
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=285.34 Aligned_cols=209 Identities=36% Similarity=0.513 Sum_probs=181.6
Q ss_pred CcCCcccc-CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCC---CCCCCe
Q psy3143 88 EENSSFHQ-MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP---RDDQNT 163 (337)
Q Consensus 88 ~~~~~f~~-~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~~ 163 (337)
....+|.+ +++++.+++++.++||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... ....++
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 34567888 89999999999999999999999999999999999999999999999999999999875321 122577
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
++||++||++|+.|+.+.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.+++... .+.++++++||+
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEEE
Confidence 89999999999999999999886 4578888999988877777777788999999999999988764 667899999999
Q ss_pred ecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 244 DEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
||||++++.+|...+..++..+++.+|+++||||+++.+..++..++++|+.|.|
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999999999999999999999999999999875
No 7
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=283.13 Aligned_cols=212 Identities=41% Similarity=0.637 Sum_probs=188.7
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVL 166 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~l 166 (337)
....+|.++++++.++++|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+...... ..++++|
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 345689999999999999999999999999999999999999999999999999999999999988643321 2467899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++||++|+.|+.+.++.++...++.+..++|+.........+ .+++|+|+||++|.+++.....+.+.++++||+|||
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999999999888889999999988766655544 467999999999999887755567889999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
|++++.+|...+..++..++..+|+++||||+++.+..+++.++.+|..|.++.
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999998754
No 8
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.6e-39 Score=274.78 Aligned_cols=202 Identities=37% Similarity=0.628 Sum_probs=185.2
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|++++|++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---KDNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---SCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc---CCCeeEEEEeC
Confidence 579999999999999999999999999999999999999999999999999999999999987432 24678999999
Q ss_pred CHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|++|+.|+.+.+..+.... +..+..++|+.........+..+++|+|+||++|.+.+.+. ...+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHh
Confidence 9999999999999998776 78899999999887777777788999999999999988763 567899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEE
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i 296 (337)
.+.+|...+..++..+++..|+++||||+++.+.+++..++.+|..|
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999899999999999999999999999999876
No 9
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=7.6e-40 Score=284.33 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=177.5
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+++++++.++++|..+||..|+++|.++++.++.|+++++++|||||||++|++|+++.+... ..++++||+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil 104 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---FKETQALVL 104 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---CCCceEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999987432 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcC-CCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+||++|+.|+.+.++.++...+..+..++|+.........+..+ ++|+|+||++|.+++... .+.+..+++||+||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCch
Confidence 99999999999999999888888898899988766655555444 899999999999988763 5678899999999999
Q ss_pred ccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 248 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
++++.+|...+..+++.++...|+++||||+++.+.+++..++++|+.|.++.
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999998753
No 10
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3e-39 Score=274.53 Aligned_cols=205 Identities=41% Similarity=0.576 Sum_probs=186.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
+|.++++++.+++++..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+........++++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 59999999999999999999999999999999999999999999999999999999999998654444457899999999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 172 ~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
++|+.|+.+.+..+... +++..++|+.........+..+++|+|+||+++.+++.+ +.+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999988754 677888888887766666777889999999999998876 366789999999999999999
Q ss_pred ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 252 EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 252 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
.+|...+..++..+++..|+++||||+++.+..++..++.+|..|.+.
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999999999999999999999999999999998764
No 11
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.6e-39 Score=278.82 Aligned_cols=206 Identities=29% Similarity=0.482 Sum_probs=183.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+|+++++++.++++|..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++||+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~~lil 98 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---NLSTQILIL 98 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---CCCceEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999987532 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+||++|+.|+++.++.++... ++++..++|+.........+. +++|+|+||++|.+++.. +.+.+.++++||+||||
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEAD 176 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCch
Confidence 999999999999999988665 788999999988776655554 579999999999998876 35668899999999999
Q ss_pred cccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 248 RMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 248 ~l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
++++.+ |...+..+++.++...|+++||||+++.+.+++..++++|+.|.++
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999987 9999999999999899999999999999999999999999998764
No 12
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=285.10 Aligned_cols=205 Identities=40% Similarity=0.613 Sum_probs=183.4
Q ss_pred CCccccCC--CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCeeEE
Q psy3143 90 NSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNTRVL 166 (337)
Q Consensus 90 ~~~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~~~l 166 (337)
..+|.+++ +++.++++|..+||..|+++|.++++.++.|++++++||||||||++|++|+++.+...... ..++++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 35677777 99999999999999999999999999999999999999999999999999999988653321 2367899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++||++||.|+++.++.++...+..+..++|+.........+..+++|+||||++|..++.....+.+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999888999999999998888777777789999999999999998766677899999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCe
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPV 294 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~ 294 (337)
|+|++.+|...+..+++.++..+|+++||||+++.+..+++.+++++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987654
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-39 Score=280.02 Aligned_cols=206 Identities=32% Similarity=0.535 Sum_probs=185.1
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.+|+++++++.+++++.++|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++||++|
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P 80 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---RAEVQAVITAP 80 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEECS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---cCCceEEEEcC
Confidence 579999999999999999999999999999999999999999999999999999999999987432 24678999999
Q ss_pred CHHHHHHHHHHHHHHhhcc----CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 171 TRELGVQVYQVTRQLAQFT----SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++|+.|+++.++.+.... ++.+..++|+.........+..+++|+|+||++|.+++.+ +.+.+.++++||+|||
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 159 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEA 159 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCc
Confidence 9999999999999988766 6888888998876655555556789999999999998876 3566889999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCC
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 300 (337)
|++.+.+|...+..++..+++..|+++||||+++++.+++..++++|..|.+..
T Consensus 160 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999998999999999999999999999999999998754
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=4.5e-39 Score=276.93 Aligned_cols=208 Identities=33% Similarity=0.531 Sum_probs=178.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|.++++++.+++.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++||++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---~~~~~~lil~ 89 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLA 89 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---CCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---CCCceEEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999987432 2467899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|.+.+.+. .+.+.++++||+||||++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHH
Confidence 999999999999999988888999999998876665555444 799999999999988764 667899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
.+.+|...+..++..+++..|+++||||+++.+.+++..++.+|+.|.+...+
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999886543
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.4e-38 Score=270.07 Aligned_cols=205 Identities=36% Similarity=0.615 Sum_probs=182.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|++++|++.++++|..+|+..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil~ 89 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMC 89 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---TTCCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---CCCEEEEEEe
Confidence 3579999999999999999999999999999999999999999999999999999999999887422 2356899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
||++|+.|+.+.++.+.... ++++..++|+.........+. ..++|+|+||++|..++.+. .+.+.+++++|+||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCHH
Confidence 99999999999999988765 789999999988766655554 45799999999999988763 5678999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
++++ .+|...+..+++.+++..|+++||||+++.+.+++..++++|..|.+
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 9987 58889999999999889999999999999999999999999998864
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=277.00 Aligned_cols=212 Identities=31% Similarity=0.493 Sum_probs=179.9
Q ss_pred cCCccccC----CCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCee
Q psy3143 89 ENSSFHQM----NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTR 164 (337)
Q Consensus 89 ~~~~f~~~----~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 164 (337)
...+|.++ ++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.. ....+++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--~~~~~~~ 100 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ--PANKGFR 100 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--CCSSSCC
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--cccCCce
Confidence 34678876 89999999999999999999999999999999999999999999999999999998843 2234678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHH-HHHHhcCCCEEEECcHHHHHHHhcCC-CCCCCCccEEE
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ-ESVLRKCPDIVIATPGRLLDHLHNTP-SFSLSDIEVLV 242 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~l~~~~~iV 242 (337)
+||++||++|+.|+++.+..++...++.+..+.|+...... ......+++|+|+||++|..++.... .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 99999999999999999999998888888877765433221 12234567999999999999997753 45689999999
Q ss_pred Eeccccccc---ccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCc
Q psy3143 243 LDEADRMLD---EHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302 (337)
Q Consensus 243 iDEad~l~~---~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~ 302 (337)
+||||++++ .+|...+..++..+ +...|+++||||+++++..++..++++|+.|.++..+
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 244 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC--
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 999999988 57888888888776 4578999999999999999999999999999987653
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=291.38 Aligned_cols=241 Identities=34% Similarity=0.481 Sum_probs=208.3
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC---------
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--------- 158 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--------- 158 (337)
....+|.+++|++.++++|..+||..|+++|.++++.++.|++++++||||||||++|++|+++.+.....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 33467999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred ------CCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC
Q psy3143 159 ------DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232 (337)
Q Consensus 159 ------~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 232 (337)
...++++||++||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++... .
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG-K 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-S
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC-C
Confidence 122478999999999999999999999988889999999999888877777888999999999999998764 5
Q ss_pred CCCCCccEEEEecccccccccHHHHHHHHHHHc--CC--CCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCe
Q psy3143 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC--SR--TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNL 308 (337)
Q Consensus 233 ~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i 308 (337)
+.+..+++||+||||++++.+|...+..++... +. ..|+++||||+++.+..+...++.+|..+.+........++
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 678999999999999999999999999988743 32 67999999999999999999999999999988777778899
Q ss_pred eEEEEEecCcchhhHHHHHHHhhh
Q psy3143 309 RQEFVSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 309 ~q~~~~~~~~~~~~~~~~L~~ll~ 332 (337)
.+.++.+.. ..+...|..++.
T Consensus 251 ~~~~~~~~~---~~~~~~l~~~l~ 271 (417)
T 2i4i_A 251 TQKVVWVEE---SDKRSFLLDLLN 271 (417)
T ss_dssp EEEEEECCG---GGHHHHHHHHHH
T ss_pred eEEEEEecc---HhHHHHHHHHHH
Confidence 999998876 356666666664
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-37 Score=290.47 Aligned_cols=241 Identities=30% Similarity=0.473 Sum_probs=215.1
Q ss_pred CCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeE
Q psy3143 86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165 (337)
Q Consensus 86 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 165 (337)
......+|.++++++.++++|..+||..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~ 108 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQA 108 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCCE
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---cCCceE
Confidence 33445789999999999999999999999999999999999999999999999999999999999877322 246789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 166 lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
||++||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++.+. .+.+..+++||+||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDE 187 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDE 187 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEcc
Confidence 99999999999999999999988899999999999988887777788899999999999998764 66788999999999
Q ss_pred ccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHH
Q psy3143 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 246 ad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
||++++.+|...+..+++.+++..|+++||||+++.+..+...++.+|..+.+........++.|+++.+... ..+..
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~ 265 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE--EWKFD 265 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--THHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--HhHHH
Confidence 9999999999999999999999999999999999999999999999999998877777788999999988765 34666
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..++.
T Consensus 266 ~l~~~~~ 272 (410)
T 2j0s_A 266 TLCDLYD 272 (410)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=295.57 Aligned_cols=241 Identities=29% Similarity=0.424 Sum_probs=184.0
Q ss_pred CCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCC
Q psy3143 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQ 161 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 161 (337)
..|.....+|.+++|++.++++|..+||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+... ..
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~---~~ 161 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---NK 161 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT---SC
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc---CC
Confidence 444556779999999999999999999999999999999999987 8999999999999999999999887432 23
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
++++|||+||++|+.|+++.+..+..+. ++.+....++...... ....++|+||||++|++++.+.+.+.+.++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 5689999999999999999999988764 6777777776653221 23456899999999999998766777899999
Q ss_pred EEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcc
Q psy3143 241 LVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319 (337)
Q Consensus 241 iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~ 319 (337)
|||||||++++ .+|...+..+.+.++..+|+++||||++..+..+...++.+|..+.+.........+.|.++.+...
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 317 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR- 317 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH-
Confidence 99999999987 6888899999999999999999999999999999999999999999988888888999999988764
Q ss_pred hhhHHHHHHHhhh
Q psy3143 320 EVRLYNVLGLMLL 332 (337)
Q Consensus 320 ~~~~~~~L~~ll~ 332 (337)
..++..|..++.
T Consensus 318 -~~~~~~l~~~~~ 329 (479)
T 3fmp_B 318 -DEKFQALCNLYG 329 (479)
T ss_dssp -------------
T ss_pred -HHHHHHHHHHHh
Confidence 356666665554
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=277.62 Aligned_cols=240 Identities=32% Similarity=0.489 Sum_probs=213.5
Q ss_pred CcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 88 ~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
....+|.++++++.+++.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ..+.++||
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~li 113 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---LKATQALV 113 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---SCSCCEEE
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---CCceeEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999987432 24678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
++||++|+.|+.+.+..++...+..+...+|+.........+. ..++|+|+||++|.+++... .+.+..+++||+|||
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEA 192 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECH
Confidence 9999999999999999999888999999999988776655554 67899999999999998773 567888999999999
Q ss_pred cccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 247 d~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
|++.+.+|...+..++..+++..|+++||||+++.+..+...++.+|..+.+.........+.+.++.+... ..+...
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 270 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE--EWKLDT 270 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS--TTHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH--HhHHHH
Confidence 999999999999999999999999999999999999999999999999999888888888999999988765 356777
Q ss_pred HHHhhhc
Q psy3143 327 LGLMLLR 333 (337)
Q Consensus 327 L~~ll~~ 333 (337)
|..++..
T Consensus 271 l~~~~~~ 277 (414)
T 3eiq_A 271 LCDLYET 277 (414)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 7776643
No 21
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-35 Score=276.03 Aligned_cols=241 Identities=29% Similarity=0.424 Sum_probs=208.3
Q ss_pred CCCCCcCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCC
Q psy3143 84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQ 161 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 161 (337)
..|.....+|.++++++.++++|.++|+..|+++|.++++.++.+ +++++++|||+|||++|++|+++.+... ..
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---~~ 94 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---NK 94 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---SC
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc---CC
Confidence 444566788999999999999999999999999999999999987 8999999999999999999999987432 24
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~ 240 (337)
++++||++||++|+.|+.+.+..+.... +..+....++...... ....++|+|+||++|.+++.+.+.+.+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 6689999999999999999999988764 6778888777653321 23457999999999999997766777899999
Q ss_pred EEEeccccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcc
Q psy3143 241 LVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319 (337)
Q Consensus 241 iViDEad~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~ 319 (337)
||+||||++++ .++...+..+...++...|+++||||+++.+..+...++.+|..+.+.........+.+.++.+...
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR- 250 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH-
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh-
Confidence 99999999987 6788888899999999999999999999999999999999999999888888888999999987764
Q ss_pred hhhHHHHHHHhhh
Q psy3143 320 EVRLYNVLGLMLL 332 (337)
Q Consensus 320 ~~~~~~~L~~ll~ 332 (337)
..+...|..++.
T Consensus 251 -~~~~~~l~~~~~ 262 (412)
T 3fht_A 251 -DEKFQALCNLYG 262 (412)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh
Confidence 567777777764
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.5e-35 Score=273.07 Aligned_cols=235 Identities=32% Similarity=0.522 Sum_probs=205.2
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|++++|++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil~ 96 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---LNKIQALIMV 96 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---SCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---cCCccEEEEc
Confidence 4679999999999999999999999999999999999999999999999999999999999887432 2466899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+.+.++.+....++.+....|+.........+...++|+|+||++|.+++.+. ...+.++++||+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchHh
Confidence 9999999999999999988889999999998887776667778899999999999988763 566899999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
.+.+|...+..++..++...|+++||||++..+...+..++.+|..+.+.. .....++.+++..+.. ..|...|..
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~k~~~l~~ 251 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE---RQKLHCLNT 251 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG---GGHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech---hhHHHHHHH
Confidence 999999999999998888999999999999999999999999998876643 3455778888887765 356666666
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
++.
T Consensus 252 ~~~ 254 (400)
T 1s2m_A 252 LFS 254 (400)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-34 Score=269.56 Aligned_cols=236 Identities=34% Similarity=0.555 Sum_probs=201.7
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|++++|++.++++|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 83 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---TGQVSVLVMC 83 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC---TTCCCEEEEC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc---CCCeeEEEEC
Confidence 3579999999999999999999999999999999999999999999999999999999999887422 2356899999
Q ss_pred CCHHHHHHHHHHHHHHhhcc-CcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
||++|+.|+.+.+..+.... ++++..++|+.........+. ..++|+|+||++|..++.+. .+.+.++++||+||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHH
Confidence 99999999999999988765 789999999988776665554 44799999999999988764 5678999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCcc-ccCCeeEEEEEecCcchhhHHH
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE-VALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~-~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
++.+ .++...+..++...+...|+++||||+++.+..++..++.+|..+.+..... ....+.++++.+... .+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 239 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN---EKNR 239 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGG---GHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCch---hHHH
Confidence 9987 4788889999998888999999999999999999999999999998866543 446788888887764 4555
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..++.
T Consensus 240 ~l~~~l~ 246 (391)
T 1xti_A 240 KLFDLLD 246 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.7e-35 Score=273.74 Aligned_cols=236 Identities=31% Similarity=0.472 Sum_probs=186.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+|+++++++.+++++..+|+..|+++|.++++.++.++++++++|||+|||++|++|+++.+... ..++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---CCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---CCCCCEEEEc
Confidence 3579999999999999999999999999999999999999999999999999999999999987432 2467899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
||++|+.|+.+.+..+....++.+..++|+.........+. .++|+|+||++|.+.+.+. .+.+.++++||+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHh
Confidence 99999999999999998888899999999988766555544 4699999999999988764 566889999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHH
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~ 329 (337)
.+.+|...+..++..+++..|+++||||+++.+..+...++.+|..+.+........++.++++.+... ..+...|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE--EYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--hhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887777778888988877754 345666666
Q ss_pred hhh
Q psy3143 330 MLL 332 (337)
Q Consensus 330 ll~ 332 (337)
++.
T Consensus 253 ~~~ 255 (394)
T 1fuu_A 253 LYD 255 (394)
T ss_dssp ---
T ss_pred HHh
Confidence 553
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.6e-34 Score=265.99 Aligned_cols=233 Identities=30% Similarity=0.464 Sum_probs=203.5
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLV 167 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~li 167 (337)
..+|++++|++.++++|..+|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... ..++++||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~li 80 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---DASPQAIC 80 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---CCSCCEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---CCCccEEE
Confidence 478999999999999999999999999999999999998 8999999999999999999999987432 24678999
Q ss_pred EcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 168 l~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
++||++|+.|+++.+..++...++.+...+++..... ....++|+|+||++|..++.+. .+.+.++++||+||||
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEAD 155 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChh
Confidence 9999999999999999999888888888887654222 2345799999999999988763 6678999999999999
Q ss_pred cccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHH
Q psy3143 248 RMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326 (337)
Q Consensus 248 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~ 326 (337)
++.+ .++...+..+...++...|+++||||+++.+..+...++.++..+.+.........+.+.+..+... ..+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 233 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE--ADKFDV 233 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH--HHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch--HHHHHH
Confidence 9887 6788999999999999999999999999999999999999999998877777778899999887654 567777
Q ss_pred HHHhhh
Q psy3143 327 LGLMLL 332 (337)
Q Consensus 327 L~~ll~ 332 (337)
|..++.
T Consensus 234 l~~~~~ 239 (395)
T 3pey_A 234 LTELYG 239 (395)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777764
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-33 Score=257.31 Aligned_cols=230 Identities=31% Similarity=0.512 Sum_probs=199.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..+|.+++|++.++++|.++|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+.. ..+.++||+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----~~~~~~lil 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----NNGIEAIIL 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----SSSCCEEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----cCCCcEEEE
Confidence 357999999999999999999999999999999999988 699999999999999999999988742 246789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++|+.|+.+.+..+....++.+...+|+.........+. .++|+|+||++|.+++... .+.+.++++||+||||.
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchH
Confidence 999999999999999998888889999999988776655554 5799999999999988763 56689999999999999
Q ss_pred cccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~ 328 (337)
+.+.+|...+..++..+++..+++++|||+++.+..+...++.++..+.... ...+.+.|+.+.. ..++..|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~l~ 231 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNE---NERFEALC 231 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCG---GGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeCh---HHHHHHHH
Confidence 9999999999999999999999999999999999999999998887776532 3467888887765 46667777
Q ss_pred Hhhh
Q psy3143 329 LMLL 332 (337)
Q Consensus 329 ~ll~ 332 (337)
.++.
T Consensus 232 ~~l~ 235 (367)
T 1hv8_A 232 RLLK 235 (367)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 6664
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.7e-34 Score=278.66 Aligned_cols=228 Identities=30% Similarity=0.462 Sum_probs=189.5
Q ss_pred CccccCC----CCHHHHHHHHhCCCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCe
Q psy3143 91 SSFHQMN----LSRPLLKAIGALNYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNT 163 (337)
Q Consensus 91 ~~f~~~~----l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~ 163 (337)
.+|.++. |++.++++|..+||..|+++|.++++.++ .+++++++||||+|||++|++|+++.+...... ..++
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 3455554 99999999999999999999999999999 788999999999999999999999998754322 3467
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhc----cCcEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQF----TSVEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
++|||+||++||.|+...+..+... ....+..++|+.........+ ...++|+||||++|.+++.......+..+
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 8999999999999999999988642 356788888888877665555 44789999999999998876433457889
Q ss_pred cEEEEecccccccccHHHHHHHHHHHcC-------CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC----ccccCC
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLCS-------RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN----HEVALN 307 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~----~~~~~~ 307 (337)
++|||||||+|++++|...+..|+..++ ..+|+++||||+++.+..++..++.+|..+.+... ......
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 256 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 256 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccc
Confidence 9999999999999999999888876653 36799999999999999999999999988876542 233466
Q ss_pred eeEEEEEecCc
Q psy3143 308 LRQEFVSFSNI 318 (337)
Q Consensus 308 i~q~~~~~~~~ 318 (337)
+.+.++.+...
T Consensus 257 i~~~~~~~~~~ 267 (579)
T 3sqw_A 257 IDQSVVISEKF 267 (579)
T ss_dssp EEEEEEEESST
T ss_pred cceEEEEecch
Confidence 88888877654
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.2e-33 Score=273.23 Aligned_cols=228 Identities=30% Similarity=0.463 Sum_probs=188.0
Q ss_pred CccccCC----CCHHHHHHHHhCCCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCC-CCCe
Q psy3143 91 SSFHQMN----LSRPLLKAIGALNYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAFMLPILERLLYKPRD-DQNT 163 (337)
Q Consensus 91 ~~f~~~~----l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~-~~~~ 163 (337)
.+|.++. |++.+++++..+||..|+++|.++++.++ .+++++++||||||||++|++|+++.+...... ..++
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3455543 99999999999999999999999999999 678999999999999999999999998754422 2357
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhc----cCcEEEEEeCCccHHHHHHHH-hcCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQF----TSVEVALSVGGLEVKVQESVL-RKCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
++|||+||++||.|++..+..+... ....+..++|+.........+ ...++|+||||++|.+++.+.....++.+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999987543 246678888888776655544 45789999999999998876433457889
Q ss_pred cEEEEecccccccccHHHHHHHHHHHc-------CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCC----ccccCC
Q psy3143 239 EVLVLDEADRMLDEHFASQMKEIIRLC-------SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN----HEVALN 307 (337)
Q Consensus 239 ~~iViDEad~l~~~~~~~~~~~i~~~~-------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~----~~~~~~ 307 (337)
++|||||||+|++++|...+..+...+ ...+|+++||||+++.+..++..++.+|..+.+... ......
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 999999999999999999988887665 237799999999999999999999999888876433 234466
Q ss_pred eeEEEEEecCc
Q psy3143 308 LRQEFVSFSNI 318 (337)
Q Consensus 308 i~q~~~~~~~~ 318 (337)
+.+.++.+...
T Consensus 308 ~~~~~~~~~~~ 318 (563)
T 3i5x_A 308 IDQSVVISEKF 318 (563)
T ss_dssp EEEEEEEESST
T ss_pred CceEEEECchh
Confidence 88888877654
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-31 Score=243.90 Aligned_cols=208 Identities=35% Similarity=0.494 Sum_probs=183.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
|++.+.++|..+|+..|+++|.++++.++.++++++++|||+|||++|++|++.. +.++||++||++|+.|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHH
Confidence 5788999999999999999999999999999999999999999999999998874 5679999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~ 257 (337)
+.+.+..++...+..+..++|+.........+.. ++|+|+||++|.+++.. ..+.+.++++||+||||++.+.+|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHH
Confidence 9999999998888999999999887766555544 79999999999998876 355688899999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcc
Q psy3143 258 MKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319 (337)
Q Consensus 258 ~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~ 319 (337)
+..++...+...++++||||+++.+...+..++.++..+... ....++.+.++.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 208 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW 208 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH
Confidence 999999999999999999999999999999999998887532 34566888888877643
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.5e-31 Score=256.84 Aligned_cols=234 Identities=27% Similarity=0.384 Sum_probs=170.8
Q ss_pred cCCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEE
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVL 166 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~l 166 (337)
....|...++++.+++.+...|+..|+++|.++++.++.+ +++++++|||||||++|++|+++.+... ..++++|
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~---~~~~~vL 193 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS---VPKPQAI 193 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---CCSCCEE
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---CCCceEE
Confidence 3345667789999999999999999999999999999998 8999999999999999999999987432 2366899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 167 il~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
|++|+++|+.|+.+.+..++...++.+....++..... ....++|+|+||++|...+... .+.+.++++||+|||
T Consensus 194 vl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~-~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 194 CLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEA 268 (508)
T ss_dssp EECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEECCH
T ss_pred EEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcC-CccccCCCEEEEech
Confidence 99999999999999999998777776666555443221 2336799999999999988764 567899999999999
Q ss_pred ccccc-ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHHH
Q psy3143 247 DRMLD-EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYN 325 (337)
Q Consensus 247 d~l~~-~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~ 325 (337)
|++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+.+.........+.+.++.+... ..+..
T Consensus 269 H~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~k~~ 346 (508)
T 3fho_A 269 DNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE--EHKYN 346 (508)
T ss_dssp HHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C--HHHHH
T ss_pred hhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch--HHHHH
Confidence 99887 6788999999999999999999999999999999999999999999888777788899988887654 46667
Q ss_pred HHHHhhh
Q psy3143 326 VLGLMLL 332 (337)
Q Consensus 326 ~L~~ll~ 332 (337)
.|..++.
T Consensus 347 ~l~~ll~ 353 (508)
T 3fho_A 347 VLVELYG 353 (508)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776664
No 31
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-31 Score=272.94 Aligned_cols=202 Identities=19% Similarity=0.212 Sum_probs=170.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
..|..+++++.+...+...++..|+++|.++++.+..|++++++||||||||++|.+|++..+. .++++||++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~P 235 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSP 235 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEES
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcC
Confidence 4677788888888888778888899999999999999999999999999999999999999873 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
|++|+.|+++.+..+.. .++++.|+.. ....++|+|+||++|.+++.+. ...+.++++|||||||+|.
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTT
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhcc
Confidence 99999999999998764 5777888765 3355799999999999999874 4457899999999999999
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCchh--HHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDA--VNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~--~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
+.+|...+..++..++...|+|+||||+++. +..++......|..+..... .+..+.+++
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~ 365 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYL 365 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEE
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEE
Confidence 9999999999999999999999999999875 45667777778877776543 233344444
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=9.6e-31 Score=245.16 Aligned_cols=201 Identities=17% Similarity=0.133 Sum_probs=157.0
Q ss_pred HHHHHHHhC-CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 101 PLLKAIGAL-NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 101 ~l~~~l~~~-~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.+.+.+++. |+ .|+++|.++++.++.|++++++||||||||++|++|++..+ ..++++||++||++|+.|++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------cCCCEEEEEECCHHHHHHHH
Confidence 344555553 55 79999999999999999999999999999999999988876 24678999999999999999
Q ss_pred HHHHHHhhccCcEEEEEeCCccH---HHHHHHHhcC-CCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc----
Q psy3143 180 QVTRQLAQFTSVEVALSVGGLEV---KVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD---- 251 (337)
Q Consensus 180 ~~~~~l~~~~~~~v~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~---- 251 (337)
+.++.++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++..
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 99999887 78999999999987 3344445444 89999999999988764 5577899999999987653
Q ss_pred -------ccHHHH-HHHHHHHcC-----------CCCeEEEEeec-CchhHH-HHHHhhCCCCeEEEeCCCccccCCeeE
Q psy3143 252 -------EHFASQ-MKEIIRLCS-----------RTRQTMLFSAT-MTDAVN-DLVSVSLTRPVRVFVDNNHEVALNLRQ 310 (337)
Q Consensus 252 -------~~~~~~-~~~i~~~~~-----------~~~q~i~~SAT-~~~~~~-~~~~~~~~~p~~i~~~~~~~~~~~i~q 310 (337)
.+|... +..++..++ ...|+++|||| .|..+. .+...++. +.+........++.|
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 566666 777777766 78999999999 565544 22332222 333444556677888
Q ss_pred EEEEec
Q psy3143 311 EFVSFS 316 (337)
Q Consensus 311 ~~~~~~ 316 (337)
.|+.++
T Consensus 234 ~~~~~~ 239 (414)
T 3oiy_A 234 VRISSR 239 (414)
T ss_dssp EEESSC
T ss_pred eeeccC
Confidence 887663
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=1.3e-28 Score=239.51 Aligned_cols=226 Identities=17% Similarity=0.157 Sum_probs=170.1
Q ss_pred CCccccCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
...+.++++++.+.+.|+. +||..|+++|.++|+.++.|+|+++.+|||+|||++|++|++.. ++++|||
T Consensus 20 ~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------~g~~lVi 90 (591)
T 2v1x_A 20 AWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------DGFTLVI 90 (591)
T ss_dssp GGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------SSEEEEE
T ss_pred ccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------CCcEEEE
Confidence 3455678999999999998 69999999999999999999999999999999999999999742 4689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH------hcCCCEEEECcHHHH------HHHhcCCCCCCC
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL------RKCPDIVIATPGRLL------DHLHNTPSFSLS 236 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~Ilv~Tp~~l~------~~l~~~~~~~l~ 236 (337)
+|+++|+.|+...+..+ ++.+..+.|+.........+ ...++|+|+||++|. +.+.. ...+.
T Consensus 91 sP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~ 164 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEAR 164 (591)
T ss_dssp CSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTT
T ss_pred eCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhcc
Confidence 99999999999999886 57888888887765543332 356899999999874 23322 33477
Q ss_pred CccEEEEeccccccccc--HHHHHHH--HHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEE
Q psy3143 237 DIEVLVLDEADRMLDEH--FASQMKE--IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~--~~~~~~~--i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~ 312 (337)
.+++|||||||++.+++ |.+.+.. ++....+..|+++||||+++.+...+..++..+..+.+.. .....++...+
T Consensus 165 ~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v 243 (591)
T 2v1x_A 165 RFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEV 243 (591)
T ss_dssp CEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEE
T ss_pred CCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEE
Confidence 89999999999999876 6665554 3444445789999999999998887777666543333222 23334454333
Q ss_pred EEecCcchhhHHHHHHHhhh
Q psy3143 313 VSFSNIDEVRLYNVLGLMLL 332 (337)
Q Consensus 313 ~~~~~~~~~~~~~~L~~ll~ 332 (337)
.. .......++..|..++.
T Consensus 244 ~~-~~~~~~~~~~~l~~~l~ 262 (591)
T 2v1x_A 244 RQ-KPSNTEDFIEDIVKLIN 262 (591)
T ss_dssp EE-CCSSHHHHHHHHHHHHT
T ss_pred Ee-CCCcHHHHHHHHHHHHH
Confidence 33 33333566666666664
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=1.7e-28 Score=252.81 Aligned_cols=194 Identities=18% Similarity=0.141 Sum_probs=157.2
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
..|| .|+++|.++++.++.|+|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.+..++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------~~~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------hcCCeEEEEechHHHHHHHHHHHHHhh-
Confidence 3577 69999999999999999999999999999999988888876 246789999999999999999999977
Q ss_pred ccCcEEEEEeCCccH---HHHHHHHhcC-CCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc----------c-c
Q psy3143 188 FTSVEVALSVGGLEV---KVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML----------D-E 252 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~----------~-~ 252 (337)
..++++..++|+... ..+...+..+ ++|+||||++|++++.. +.++++++|||||||++. + .
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999876 4455555554 89999999999988764 557889999999997654 4 6
Q ss_pred cHHHH-HHHHHHHcC-----------CCCeEEEEeec-CchhHHH-HHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 253 HFASQ-MKEIIRLCS-----------RTRQTMLFSAT-MTDAVND-LVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 253 ~~~~~-~~~i~~~~~-----------~~~q~i~~SAT-~~~~~~~-~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
+|... +..+++.++ ...|+++|||| .|..+.. +....+. +.+........++.|.|+.+.
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~ 296 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR 296 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC
Confidence 77677 788888776 78999999999 5655542 3333332 444455566788999998763
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=5.5e-28 Score=241.45 Aligned_cols=179 Identities=21% Similarity=0.270 Sum_probs=154.5
Q ss_pred ccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 92 ~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
+|.+++|++.+.+.+...||..|+++|.++++. +..+++++++||||||||++|.+|+++.+.. .+++++|++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----QGGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----HCSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCCEEEEEcC
Confidence 589999999999999999999999999999998 8889999999999999999999999988753 2578999999
Q ss_pred CHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy3143 171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 171 t~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~ 250 (337)
+++||.|+++.++.+.. .+++++..+|+...... ....++|+|+||++|..++.+. ...++++++|||||||++.
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccC
Confidence 99999999999865543 47889999887653321 1235799999999999988774 3447899999999999998
Q ss_pred cccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 251 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
+..+...+..++..++...|+|+||||+++
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n 181 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN 181 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC
Confidence 888888888888877768999999999986
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.9e-27 Score=237.49 Aligned_cols=179 Identities=21% Similarity=0.283 Sum_probs=152.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.+|.+++|++.+.+.+...||..|+++|.++++. +..+++++++||||||||++|.+++++.+.. .+++++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~il~i~ 82 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----NGGKAIYVT 82 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSEEEEEC
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----CCCeEEEEe
Confidence 5799999999999999999999999999999999 7889999999999999999999999988753 256899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|+++||.|++..++.+. ..++.++..+|+...... .+ ..++|+|+||++|..++.+. ...++++++||+||||.+
T Consensus 83 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 83 PLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHR-PEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp SCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHC-CGGGGGEEEEEECSGGGG
T ss_pred CcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCC-hhHhhccCEEEEechhhc
Confidence 99999999999886443 347888888887654321 12 35799999999999988774 334889999999999999
Q ss_pred ccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 250 LDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+..+...+..++..++ ..|+|+||||+++
T Consensus 158 ~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n 187 (715)
T 2va8_A 158 NDPERGPVVESVTIRAK-RRNLLALSATISN 187 (715)
T ss_dssp GCTTTHHHHHHHHHHHH-TSEEEEEESCCTT
T ss_pred CCcccchHHHHHHHhcc-cCcEEEEcCCCCC
Confidence 87778888887776665 7899999999985
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=1.9e-28 Score=252.28 Aligned_cols=193 Identities=21% Similarity=0.246 Sum_probs=157.8
Q ss_pred HHHH-hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 104 KAIG-ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 104 ~~l~-~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
+.+. .+||. | ++|.++++.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----KGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----TSCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----cCCeEEEEeccHHHHHHHHHHH
Confidence 4444 47999 9 9999999999999999999999999998 88998888753 3678999999999999999999
Q ss_pred HHHhhccCc----EEEEEeCCccHHHH---HHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 183 RQLAQFTSV----EVALSVGGLEVKVQ---ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 183 ~~l~~~~~~----~v~~~~~~~~~~~~---~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
+.++...++ .++.++|+.....+ ...+.. ++|+||||++|.+++.+ ++++++|||||||+|++ |.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~ 191 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--AS 191 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--ST
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--cc
Confidence 999988888 89999999877653 334455 89999999999997754 67899999999999988 45
Q ss_pred HHHHHHHHHc-----------CCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEE
Q psy3143 256 SQMKEIIRLC-----------SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313 (337)
Q Consensus 256 ~~~~~i~~~~-----------~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~ 313 (337)
..+..++..+ +...|+++||||+++. ..+...++.++..+.+........++.|.++
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~ 259 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV 259 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe
Confidence 6777777665 3567899999999987 5444444555555666666666778888877
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=8.5e-27 Score=232.18 Aligned_cols=176 Identities=21% Similarity=0.219 Sum_probs=140.2
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 103 LKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
..++..+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++|||+||++|+.|+...+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT-TCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc-CCCCeEEEEECCHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999998865432 23478999999999999999999
Q ss_pred HHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEI 261 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i 261 (337)
..++...++.+..++|+.....+...+...++|+|+||++|.+.+.......+..+++|||||||++.... +...+..+
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99988888999999998765444444555689999999999999877432268899999999999987654 44444333
Q ss_pred HHH-----cCCCCeEEEEeecCc
Q psy3143 262 IRL-----CSRTRQTMLFSATMT 279 (337)
Q Consensus 262 ~~~-----~~~~~q~i~~SAT~~ 279 (337)
+.. .++..++++||||+.
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHhhcccCCCCCeEEEEeCccc
Confidence 332 246789999999997
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=8e-27 Score=226.17 Aligned_cols=171 Identities=20% Similarity=0.204 Sum_probs=133.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
++...|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++|||+||++|+.|+...+..++..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 45567999999999999999999999999999999999999998865432 23678999999999999999999999988
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHH-HHHHHHH-c-
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ-MKEIIRL-C- 265 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~-~~~i~~~-~- 265 (337)
.++.+..++|+.........+..+++|+|+||++|.+++.......+..+++|||||||++.+.+.... +..++.. +
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 899999999998766555555566899999999999999774332689999999999999987764333 3233322 2
Q ss_pred --CCCCeEEEEeecCch
Q psy3143 266 --SRTRQTMLFSATMTD 280 (337)
Q Consensus 266 --~~~~q~i~~SAT~~~ 280 (337)
.+..|+++||||++.
T Consensus 162 ~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 162 SASQLPQILGLTASVGV 178 (556)
T ss_dssp C---CCEEEEEESCCCC
T ss_pred ccCCCCeEEEEeCCccc
Confidence 356899999999953
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.95 E-value=6.5e-28 Score=240.27 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=151.0
Q ss_pred ccccCC--CCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 92 SFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 92 ~f~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
+|.+++ |++.+.+.+...||..|+++|.++++.+..+++++++||||||||++|.+|+++.+.. +++++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEe
Confidence 578888 9999999999999999999999999999999999999999999999999999988752 56899999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l 249 (337)
|+++||.|+++.++.+. ..+++++..+|+...... ....++|+|+||++|..++.+. ...++++++||+||||.+
T Consensus 76 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEeeeeec
Confidence 99999999999886443 347888888887653221 1236799999999999988774 344789999999999999
Q ss_pred ccccHHHHHHHHHHHc---CCCCeEEEEeecCchhHHHHHHhhCC
Q psy3143 250 LDEHFASQMKEIIRLC---SRTRQTMLFSATMTDAVNDLVSVSLT 291 (337)
Q Consensus 250 ~~~~~~~~~~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~ 291 (337)
.+.++...+..++..+ .+..|+|+||||+++ ...+. .++.
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~ 193 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLD 193 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTT
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhC
Confidence 8877666666655443 678999999999986 34433 3554
No 41
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=1.3e-26 Score=222.84 Aligned_cols=192 Identities=20% Similarity=0.182 Sum_probs=150.9
Q ss_pred CccccCCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 91 SSFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..|++++|++.+.+.|++ +|+..|+++|.++++.++.|+++++++|||+|||++|++|++.. .+++|||+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~ 72 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVS 72 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEEC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEEC
Confidence 479999999999999998 79999999999999999999999999999999999999998742 45799999
Q ss_pred CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEec
Q psy3143 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 170 Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDE 245 (337)
|+++|+.|+...+..+ ++.+..+.++....... ......++|+|+||++|...... ..+...++.+|||||
T Consensus 73 P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDE 147 (523)
T ss_dssp SCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESS
T ss_pred ChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeC
Confidence 9999999999988875 47777787776654432 23345689999999999632111 123357899999999
Q ss_pred cccccccc--HHHHHHH---HHHHcCCCCeEEEEeecCchhHHHHHH--hhCCCCeEEE
Q psy3143 246 ADRMLDEH--FASQMKE---IIRLCSRTRQTMLFSATMTDAVNDLVS--VSLTRPVRVF 297 (337)
Q Consensus 246 ad~l~~~~--~~~~~~~---i~~~~~~~~q~i~~SAT~~~~~~~~~~--~~~~~p~~i~ 297 (337)
||++.+++ |...+.. +...+ +..+++++|||+++.+...+. ..+.+|..+.
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 205 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE
T ss_pred ccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe
Confidence 99998876 6555544 34444 468999999999998765443 3345666554
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=1.2e-26 Score=224.61 Aligned_cols=168 Identities=23% Similarity=0.217 Sum_probs=139.1
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... ..++++|||+||++|+.|+...+..++...++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 36899999999999999999999999999999999999998865432 23678999999999999999999999988899
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHc-----
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC----- 265 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~----- 265 (337)
.+..++|+.........+..+++|+|+||++|..++.......+..+++|||||||++...+ +...+..++...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999999876555455555689999999999999877433268899999999999998775 444444444332
Q ss_pred CCCCeEEEEeecCch
Q psy3143 266 SRTRQTMLFSATMTD 280 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~ 280 (337)
....|+++||||++.
T Consensus 162 ~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 162 DPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCCEEEEEESCCCC
T ss_pred CCCCeEEEEecCccc
Confidence 255799999999964
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.94 E-value=2.7e-27 Score=201.78 Aligned_cols=167 Identities=24% Similarity=0.243 Sum_probs=119.5
Q ss_pred CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH-HHHHHHHHhhc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ-VYQVTRQLAQF 188 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q-~~~~~~~l~~~ 188 (337)
....|+++|.++++.++.++++++++|||+|||++|+++++..+........++++||++|+++|+.| +.+.+..+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 45578999999999999999999999999999999999998877543222346789999999999999 67788877654
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC-----CCCCCccEEEEecccccccccHHH-HHHHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-----FSLSDIEVLVLDEADRMLDEHFAS-QMKEII 262 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-----~~l~~~~~iViDEad~l~~~~~~~-~~~~i~ 262 (337)
++.+..+.|+.........+...++|+|+||+.|...+..... +.+..+++||+||||++...++.. .+..++
T Consensus 110 -~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 110 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp -TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred -CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 6778887776644332223334579999999999998876432 557889999999999998765433 333333
Q ss_pred HHc-------------CCCCeEEEEeec
Q psy3143 263 RLC-------------SRTRQTMLFSAT 277 (337)
Q Consensus 263 ~~~-------------~~~~q~i~~SAT 277 (337)
... .+..++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 222 157899999998
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=5.1e-26 Score=229.46 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=136.2
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+...++.++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999999999999999999999986543 23377899999999999999999999998
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHc-
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC- 265 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~- 265 (337)
..++.+..++|+.........+..+++|+|+||++|.+++.......+..+++|||||||++...+ +...+..+....
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 889999999999877665666667789999999999999976433268899999999999988765 333343443332
Q ss_pred ---CCCCeEEEEeecCc
Q psy3143 266 ---SRTRQTMLFSATMT 279 (337)
Q Consensus 266 ---~~~~q~i~~SAT~~ 279 (337)
.+..|+++||||++
T Consensus 402 ~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 402 NSASQLPQILGLTASVG 418 (797)
T ss_dssp TTCCCCCEEEEEESCCC
T ss_pred ccCCCCCeEEEEcCCcc
Confidence 55689999999995
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=1.5e-25 Score=238.55 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=155.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGV 176 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~ 176 (337)
|.+...+++...+|..++|+|.++++.++.+ ++++++||||||||++|.+|+++.+... .++++||++|+++||.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----~~~kavyi~P~raLa~ 986 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----SEGRCVYITPMEALAE 986 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----TTCCEEEECSCHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----CCCEEEEEcChHHHHH
Confidence 6678888999999999999999999999764 6899999999999999999999998654 3568999999999999
Q ss_pred HHHHHHHH-HhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC-CCCCCccEEEEecccccccccH
Q psy3143 177 QVYQVTRQ-LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-FSLSDIEVLVLDEADRMLDEHF 254 (337)
Q Consensus 177 q~~~~~~~-l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~~~~iViDEad~l~~~~~ 254 (337)
|+++.+.. ++...+++|+.+.|+...... ....++|+||||+++..++.+... ..++++++||+||+|.+.+. .
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-r 1062 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-N 1062 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-T
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-C
Confidence 99988875 556678999999988764332 223469999999999877765322 23788999999999988764 2
Q ss_pred HHHH-------HHHHHHcCCCCeEEEEeecCchhHHHHHH-hhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 255 ASQM-------KEIIRLCSRTRQTMLFSATMTDAVNDLVS-VSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 255 ~~~~-------~~i~~~~~~~~q~i~~SAT~~~~~~~~~~-~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
+..+ ..+...++++.|+|+||||+++. ..+.. ..........+ .....+..+..++..+...
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~-~~~~RPvpL~~~i~~~~~~ 1132 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNF-HPNVRPVPLELHIQGFNIS 1132 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEEC-CGGGCSSCEEEEEEEECCC
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEe-CCCCCCCCeEEEEEeccCC
Confidence 3322 33334567789999999999864 33333 22222222222 2334455566665555543
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-25 Score=227.51 Aligned_cols=185 Identities=21% Similarity=0.261 Sum_probs=151.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.+|. |+++|.++++.+..|++++++||||||||++|.++++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 4554 99999999999999999999999999999999999988773 367899999999999999999998764
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
.++.+.|+.... ..++|+|+||++|.+++.+. ...+.++++|||||||+|.+.++...+..++..++..
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 677788876532 35699999999999988764 5568899999999999999988888888899999999
Q ss_pred CeEEEEeecCchhHH--HHHHhhCCCCeEEEeCCCccccCCeeEEEEE
Q psy3143 269 RQTMLFSATMTDAVN--DLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314 (337)
Q Consensus 269 ~q~i~~SAT~~~~~~--~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~ 314 (337)
.|+|+||||+++... ..+......|..+..... .+..+.++++.
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~ 269 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFP 269 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEe
Confidence 999999999987533 444444566777766432 33446666554
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=3e-26 Score=224.66 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=137.8
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+ +||++|..++|.++.|+ |+.++||+|||++|.+|++...+ .+..++||+||++||.|++.++..+..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------~g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4799 99999999999999999 99999999999999999985443 255799999999999999999999999
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc-cc--------
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML-DE-------- 252 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~-~~-------- 252 (337)
++++++++++||.....+. ...+++|+||||++| .+++..+ ..+.++.+.++||||||.|+ +.
T Consensus 150 ~lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 9999999999998765433 344679999999999 5665432 23568899999999999988 55
Q ss_pred -------cHHHHHHHHHHHcC---------CCCeEE-----------------EEeecCch
Q psy3143 253 -------HFASQMKEIIRLCS---------RTRQTM-----------------LFSATMTD 280 (337)
Q Consensus 253 -------~~~~~~~~i~~~~~---------~~~q~i-----------------~~SAT~~~ 280 (337)
+|...+..|+..++ +.+|++ +||||++.
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 37889999999886 467887 89999874
No 48
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=8.8e-26 Score=195.36 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=129.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh-
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ- 187 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~- 187 (337)
.....++++|.++++.+..|++++++|+||||||+++.++++..+..... ..+.++++++|+++++.|+.+.+.....
T Consensus 57 ~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 57 RELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34445789999999999999999999999999999999999887754332 2356899999999999999877765432
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc-ccccHH-HHHHHHHHHc
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM-LDEHFA-SQMKEIIRLC 265 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l-~~~~~~-~~~~~i~~~~ 265 (337)
..+..++....... ......++|+|||||+|++++.. .++++++|||||||.+ ++.+|. ..+..+....
T Consensus 136 ~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 136 EPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 23444443332211 11124468999999999999876 3889999999999986 777776 4666666655
Q ss_pred CCCCeEEEEeecCchhHHHHHHhhCCCCe
Q psy3143 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPV 294 (337)
Q Consensus 266 ~~~~q~i~~SAT~~~~~~~~~~~~~~~p~ 294 (337)
++.|+++||||++... +...+...|+
T Consensus 207 -~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 207 -PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp -TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred -CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4789999999999876 4444444443
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=3e-25 Score=236.40 Aligned_cols=215 Identities=17% Similarity=0.235 Sum_probs=157.9
Q ss_pred CCCCChHHHHHHHHHHh-CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCC-----CCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVAL-LGRDICGCAATGTGKTAAFMLPILERLLYKPR-----DDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
||..++++|.+++|.++ .++|++++||||||||++|.+++++.+..... ...+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999887 47799999999999999999999999865322 1246799999999999999999999
Q ss_pred HHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCC-CCCCCccEEEEecccccccccHHHHHH---
Q psy3143 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-FSLSDIEVLVLDEADRMLDEHFASQMK--- 259 (337)
Q Consensus 184 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~~~~iViDEad~l~~~~~~~~~~--- 259 (337)
+.....+++|+.++|+...... ....++|+||||+++..++.+... ..++.+++|||||+|.+.+ ..+..+.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888889999999998764322 124579999999998665544221 1278899999999997755 3333332
Q ss_pred -HH---HHHcCCCCeEEEEeecCchhHHHHHHhhCCC--CeEEEeCCCccccCCeeEEEEEecCcchhhHHHHHHHh
Q psy3143 260 -EI---IRLCSRTRQTMLFSATMTDAVNDLVSVSLTR--PVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330 (337)
Q Consensus 260 -~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~~~L~~l 330 (337)
++ ...++...|+|++|||+|+ ...++ .|+.. +..+.+-.....+..+.|+++.+........+..+..+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA-~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVA-TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHH-HHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHH-HHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHH
Confidence 22 3356788999999999986 34433 34442 22222233445566788888887776555555555443
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=3.2e-25 Score=226.43 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=134.5
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
-.|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|++..++.++.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999999999999998875432 22367899999999999999999999988
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-HHHHHHHHHHHc-
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC- 265 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~~- 265 (337)
..++.+..++|+.....+...+...++|+|+||++|.+++.......+.++++|||||||++...+ +...+..+....
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 888999999999876655445555679999999999999976433368899999999999988764 444444444332
Q ss_pred ---CCCCeEEEEeecCc
Q psy3143 266 ---SRTRQTMLFSATMT 279 (337)
Q Consensus 266 ---~~~~q~i~~SAT~~ 279 (337)
.+..|+++||||++
T Consensus 402 ~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 402 NSASQLPQILGLTASVG 418 (936)
T ss_dssp TTCSCCCEEEEEESCCC
T ss_pred ccCCCcCeEEEecCCcc
Confidence 45689999999995
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=1.8e-25 Score=218.62 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=114.0
Q ss_pred CCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 109 LNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
+|. +|+++|..++|.++.|+ ++.++||+|||++|++|++...+ .+.+++||+||++||.|++.++..+..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------TGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------TSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 454 89999999999999998 99999999999999999986553 2567999999999999999999999999
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCCCccEEEEecccccc-cc---------
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLSDIEVLVLDEADRML-DE--------- 252 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~~~~iViDEad~l~-~~--------- 252 (337)
+++++++++||..... +....+++|+||||++| .+++..+- .+.++.+.++||||||.|+ +.
T Consensus 142 lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 9999999999987643 33444689999999999 78776532 2557899999999999998 43
Q ss_pred ------cHHHHHHHHHHHcCC
Q psy3143 253 ------HFASQMKEIIRLCSR 267 (337)
Q Consensus 253 ------~~~~~~~~i~~~~~~ 267 (337)
+|...+..|+..++.
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp C--------------------
T ss_pred CCccchhHHHHHHHHHHhchh
Confidence 366778888877764
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=4.9e-25 Score=225.28 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=133.8
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|.++++.++.|++++++||||||||++|++++...+. .++++||++||++|+.|+++.+..+.. ++.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~ 110 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETFD--DVN 110 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC----CC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCe
Confidence 479999999999999999999999999999999998887763 367899999999999999999887543 578
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
++.++|+... ...++|+|+||++|.+++... ...+.++++|||||||++.+.++...+..++..++...|+|
T Consensus 111 v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 111 IGLITGDVQI-------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp EEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred EEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 8888887653 244699999999999988764 45578999999999999999988888889999999999999
Q ss_pred EEeecCchhH
Q psy3143 273 LFSATMTDAV 282 (337)
Q Consensus 273 ~~SAT~~~~~ 282 (337)
++|||+++..
T Consensus 183 lLSAT~~n~~ 192 (997)
T 4a4z_A 183 LLSATVPNTY 192 (997)
T ss_dssp EEECCCTTHH
T ss_pred EEcCCCCChH
Confidence 9999998664
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1.4e-24 Score=212.88 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=138.8
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+ +|+++|..++|.++.|+ |+.++||+|||++|.+|++...+ .+..|+||+||++||.|+..++..+..
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------AGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------TTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------hCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4688 99999999999999998 99999999999999999975543 245799999999999999999999999
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcC-----CCCCCCCccEEEEecccccc-c---------
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML-D--------- 251 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~-~--------- 251 (337)
++++++++++||.+..... ...+++|+||||++| .+++..+ ..+.++.+.++||||||.|+ +
T Consensus 178 ~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 9999999999998754333 334579999999999 7777653 13567899999999999998 4
Q ss_pred ------ccHHHHHHHHHHHcC---------CCCeEE-----------------EEeecCch
Q psy3143 252 ------EHFASQMKEIIRLCS---------RTRQTM-----------------LFSATMTD 280 (337)
Q Consensus 252 ------~~~~~~~~~i~~~~~---------~~~q~i-----------------~~SAT~~~ 280 (337)
.+|...+..|+..++ +.+|++ +||||.+.
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 358899999999997 678998 99999875
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.91 E-value=1.9e-23 Score=216.58 Aligned_cols=218 Identities=21% Similarity=0.200 Sum_probs=158.3
Q ss_pred CCCCHHHHHHHHh-CCCCCChHHHHHHHHHHhC----CC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 96 MNLSRPLLKAIGA-LNYIYPTPIQAATIPVALL----GR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 96 ~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~----~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
++++....+.+.. ++|. ||++|.++++.++. ++ +++++++||+|||++|+++++..+. .+.+++|+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvl 658 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVL 658 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEE
Confidence 3466677777754 4664 79999999999886 66 9999999999999999999887763 35689999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---Hh-cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEe
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---LR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViD 244 (337)
+||++||.|+++.+..+....++++..+.+.......... +. ..++|+||||+.|. . .+.++++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C--CccccccceEEEe
Confidence 9999999999999998877778889888887665544322 22 35899999997653 2 4568999999999
Q ss_pred cccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCcchhhHH
Q psy3143 245 EADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLY 324 (337)
Q Consensus 245 Ead~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~~~~~ 324 (337)
|||++. .....+++.+....++++||||+.+....+....+.++..+...+. ....+.+++..... ..-+.
T Consensus 733 EaH~~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~~--~~i~~ 803 (1151)
T 2eyq_A 733 EEHRFG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYDS--MVVRE 803 (1151)
T ss_dssp SGGGSC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECCH--HHHHH
T ss_pred chHhcC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCCH--HHHHH
Confidence 999953 2334455556678899999999988888877777777666554332 22345554443322 12333
Q ss_pred HHHHHhhhcCC
Q psy3143 325 NVLGLMLLREN 335 (337)
Q Consensus 325 ~~L~~ll~~~~ 335 (337)
.++..+.+.++
T Consensus 804 ~il~~l~~g~q 814 (1151)
T 2eyq_A 804 AILREILRGGQ 814 (1151)
T ss_dssp HHHHHHTTTCE
T ss_pred HHHHHHhcCCe
Confidence 44444444443
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=1.1e-23 Score=209.46 Aligned_cols=167 Identities=22% Similarity=0.239 Sum_probs=131.7
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhCC------CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 102 LLKAIGALNYIYPTPIQAATIPVALLG------RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 102 l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+.+.+..++| .||++|.++++.++.+ ++++++|+||||||++|++|++..+. .+.+++|++||++||
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------~g~qvlvlaPtr~La 430 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------AGFQTAFMVPTSILA 430 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------HTSCEEEECSCHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHH
Confidence 3344567888 8999999999998865 59999999999999999999999874 357899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---H-hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---L-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~ 251 (337)
.|+++.+..+....++++..++|+......... + ...++|+||||+.+.+ .+.+.++++||+||+|++..
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhH
Confidence 999999999988888999999999876654332 2 2358999999987754 45688999999999999632
Q ss_pred ccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHH
Q psy3143 252 EHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 252 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 286 (337)
.. ...+.......++++||||+.+....+.
T Consensus 505 ~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~ 534 (780)
T 1gm5_A 505 KQ-----REALMNKGKMVDTLVMSATPIPRSMALA 534 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCCHHHHHH
T ss_pred HH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH
Confidence 21 1122223356899999999877655544
No 56
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=3e-23 Score=196.91 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=135.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+. ..+.++|||+|+++|+.|+.+.+..+.......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 5899999999999998 9999999999999999999988774 236689999999999999999999887544558
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
+..++|+.........+ ..++|+|+||+.|...+... .+.+..+++||+||||++........+...+....+..+++
T Consensus 83 v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 88888888766544433 34699999999999988763 56788999999999999886654444555555556788999
Q ss_pred EEeecCchh---HHHHHH
Q psy3143 273 LFSATMTDA---VNDLVS 287 (337)
Q Consensus 273 ~~SAT~~~~---~~~~~~ 287 (337)
+||||+... +..++.
T Consensus 161 ~lTaTp~~~~~~~~~l~~ 178 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVIN 178 (494)
T ss_dssp EEESCSCSSHHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHHH
Confidence 999999844 444444
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.91 E-value=5.3e-25 Score=219.36 Aligned_cols=168 Identities=24% Similarity=0.254 Sum_probs=127.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHH-HHHHHHHhhccC
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV-YQVTRQLAQFTS 190 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~-~~~~~~l~~~~~ 190 (337)
..|+++|.++++.++.|+++++++|||+|||++|++|+++.+........++++|||+|+++|+.|+ .+.+..++.. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 3689999999999999999999999999999999999998876433222347899999999999999 9999988755 4
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhc-----CCCCCCCCccEEEEeccccccccc-HHHHHHHHHHH
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN-----TPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRL 264 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-----~~~~~l~~~~~iViDEad~l~~~~-~~~~~~~i~~~ 264 (337)
+.+..++|+.........+...++|+|+||++|.+.+.+ ...+.+..+++|||||||++...+ |...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 788888888765444444556789999999999988842 224567899999999999986543 33333322221
Q ss_pred ----c---------CCCCeEEEEeecCch
Q psy3143 265 ----C---------SRTRQTMLFSATMTD 280 (337)
Q Consensus 265 ----~---------~~~~q~i~~SAT~~~ 280 (337)
. .+..|+++||||++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhcccccccccccCCCCCEEEEecccccc
Confidence 1 156799999999997
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=3.2e-24 Score=190.60 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=124.0
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.++++.++.+++.++++|||+|||++++.++...+.. .++++||++||++|+.|+.+.+..+......
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 37999999999999988899999999999999998887776632 2348999999999999999999998766667
Q ss_pred EEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeE
Q psy3143 192 EVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271 (337)
Q Consensus 192 ~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~ 271 (337)
.+..+.++..... ......+|+|+||+.+.... ...+..+++||+||||++.. ..+..++..+....++
T Consensus 187 ~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 187 MIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (282)
T ss_dssp GEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEE
T ss_pred eEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeE
Confidence 7777777754321 22245699999999875432 23467899999999999874 3566677777778999
Q ss_pred EEEeecCchhH
Q psy3143 272 MLFSATMTDAV 282 (337)
Q Consensus 272 i~~SAT~~~~~ 282 (337)
++||||+++..
T Consensus 256 l~lSATp~~~~ 266 (282)
T 1rif_A 256 FGLSGSLRDGK 266 (282)
T ss_dssp EEECSSCCTTS
T ss_pred EEEeCCCCCcc
Confidence 99999998663
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.88 E-value=9.1e-23 Score=195.99 Aligned_cols=156 Identities=18% Similarity=0.167 Sum_probs=127.9
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
...|+++|.++++.++.+++++++++||+|||++|+.++...+.. .++++|||+||++|+.|+.+.+..+..+.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 347999999999999999999999999999999999988887642 234899999999999999999998876667
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
..+..++|+.....+ ....++|+|+||+.|... ....+.++++|||||||++.. ..+..+++.+....+
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 788888887654332 345679999999976542 234577899999999999875 345566777777889
Q ss_pred EEEEeecCchhH
Q psy3143 271 TMLFSATMTDAV 282 (337)
Q Consensus 271 ~i~~SAT~~~~~ 282 (337)
+++||||+++..
T Consensus 255 ~l~lSATp~~~~ 266 (510)
T 2oca_A 255 KFGLSGSLRDGK 266 (510)
T ss_dssp EEEEESCGGGCS
T ss_pred EEEEEeCCCCCc
Confidence 999999998764
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.87 E-value=1.5e-23 Score=204.54 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=131.0
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHH
Q psy3143 96 MNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175 (337)
Q Consensus 96 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La 175 (337)
+++++.+++++... ...|+|+|+.+++.++.|++++++||||||||++|++|+++.+.. .++++||++|||+||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----~~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----RRLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEcChHHHH
Confidence 55777766666543 478899998899999999999999999999999999999998864 357899999999999
Q ss_pred HHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH
Q psy3143 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 176 ~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~ 255 (337)
.|+++.+.. ..+....+... .....+..+.++|.+.+...+.. ...+.++++|||||||++ +.+|.
T Consensus 229 ~Qi~~~l~~------~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 229 AEMEEALRG------LPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHTTT------SCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHhcC------CceeEecccce-----eccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-CccHH
Confidence 999887762 33332111100 01112336778888888877766 345899999999999998 77787
Q ss_pred HHHHHHHHHcC-CCCeEEEEeecCchhHHHHHHhhCCCCeEEEeC
Q psy3143 256 SQMKEIIRLCS-RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299 (337)
Q Consensus 256 ~~~~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 299 (337)
..+..+...++ ...|+++||||++..+..+.. .++..+.+.
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~ 336 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIE 336 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEE
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeec
Confidence 78888877764 679999999999987554332 356555554
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.87 E-value=1.2e-22 Score=192.05 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=121.2
Q ss_pred CCCCChHHHHHHHHHHhCCCCE-EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 110 NYIYPTPIQAATIPVALLGRDI-CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~~~~~~-lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
|+..|+++|. ++|.++.++++ +++||||||||++|++|++..+.. .++++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----~~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----RRLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----cCCcEEEECCCHHHHHHHHHHhc-----
Confidence 6788999985 79999999987 899999999999999999987653 35789999999999999988774
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHH-HcCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR-LCSR 267 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~-~~~~ 267 (337)
+..+....+.... ....+..|.++|++.|...+.+ ...+.++++|||||||++ +..+...+..+.. ...+
T Consensus 70 -g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp -TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred -Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 2333322221110 1123457999999999988876 356889999999999987 4444443333332 3456
Q ss_pred CCeEEEEeecCchhHHHHHHhhCCCCeEEEe
Q psy3143 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298 (337)
Q Consensus 268 ~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 298 (337)
..|+++||||++..+.. .+..++..+.+
T Consensus 141 ~~~~i~~SAT~~~~~~~---~~~~~~~~~~~ 168 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDP---FPQSNSPIEDI 168 (451)
T ss_dssp SCEEEEECSSCTTCCCS---SCCCSSCEEEE
T ss_pred CceEEEEccCCCccchh---hhcCCCceEec
Confidence 79999999999875543 23345655554
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.86 E-value=4.6e-21 Score=191.45 Aligned_cols=210 Identities=17% Similarity=0.144 Sum_probs=145.1
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhCC-CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG-RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
..+|.++++++.+.+.+...+ ..|+++|+.+|+.++.+ ++++++||||||||++ +|++..... ...+.+.+++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~-~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDE-MPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHH-CGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhc-cccCCCceEEec
Confidence 467999999999999999888 78999999999988755 5799999999999994 444421111 111125679999
Q ss_pred cCCHHHHHHHHHHHHHHh-hccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 169 VPTRELGVQVYQVTRQLA-QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
+|+|+|+.|+...+.... ...+..++....... ......+|+|+|||++.+.+.. ...+.++++|||||+|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 999999999987665432 222333332222111 1124568999999999998876 3458999999999999
Q ss_pred c-ccccc-HHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEecCc
Q psy3143 248 R-MLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI 318 (337)
Q Consensus 248 ~-l~~~~-~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~~~ 318 (337)
. +++.. +...+..+.... +..|+++||||++.. . +..++.++..+.+.... ..+.++|+.+...
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~ 284 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGRT---YPVELYYTPEFQR 284 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCCC---CCEEEECCSSCCS
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--H-HHHHhcCCCcccccCcc---cceEEEEecCCch
Confidence 5 66543 334455555443 578999999999643 3 33456666666664432 4577777765543
No 63
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=3.3e-21 Score=188.63 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=113.5
Q ss_pred hCCCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 108 ALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 108 ~~~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+|+ +|+++|..++|.++.|+ |+.+.||+|||++|.+|++...+ .+..++|++||++||.|.+.++..+..
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------TGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------TCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3688 99999999999999998 99999999999999999965443 245799999999999999999999999
Q ss_pred ccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHH-HHHHhcCC-----CCCCC---CccEEEEecccccc
Q psy3143 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRL-LDHLHNTP-----SFSLS---DIEVLVLDEADRML 250 (337)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~---~~~~iViDEad~l~ 250 (337)
++++++++++||...... ....+++|+||||++| .+++...- .+.++ .+.++||||||.|+
T Consensus 146 ~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999875433 3345689999999999 78887642 34577 89999999999876
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.85 E-value=4.1e-21 Score=182.72 Aligned_cols=137 Identities=22% Similarity=0.234 Sum_probs=113.4
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+.+..+ ++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~ 158 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GE 158 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGG----CG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhC----CC
Confidence 36899999999999999999999999999999999988764 457999999999999998888873 57
Q ss_pred E-EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 192 E-VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 192 ~-v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
. ++.+.|+... ..+|+|+||+.+...+... ...+++|||||||++...+|.. +...+ ...+
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 7 8888777542 4699999999998766431 2458999999999998887754 34444 3678
Q ss_pred EEEEeecCc
Q psy3143 271 TMLFSATMT 279 (337)
Q Consensus 271 ~i~~SAT~~ 279 (337)
++++|||+.
T Consensus 221 ~l~lSATp~ 229 (472)
T 2fwr_A 221 RLGLTATFE 229 (472)
T ss_dssp EEEEESCCC
T ss_pred EEEEecCcc
Confidence 999999997
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.85 E-value=6.2e-22 Score=192.24 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEE
Q psy3143 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193 (337)
Q Consensus 114 p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v 193 (337)
+..+|..+++.+..+++++++||||||||++|++|+++. +.++||++|||+||.|+++.+.+.. +..+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------g~~vLVl~PTReLA~Qia~~l~~~~---g~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKAH---GIDP 285 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------TCCEEEEESCHHHHHHHHHHHHHHH---SCCC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------CCeEEEEcchHHHHHHHHHHHHHHh---CCCe
Confidence 445566666666678899999999999999999998762 4589999999999999988665543 4556
Q ss_pred EEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe--E
Q psy3143 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ--T 271 (337)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q--~ 271 (337)
...+|+.. ...+++|+|+||++|+ . .+.+.++++++||||||| +++.+|...+..+++.++...| +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 66777654 3566899999999984 2 346778899999999996 5678888889999999887766 7
Q ss_pred EEEeecCchh
Q psy3143 272 MLFSATMTDA 281 (337)
Q Consensus 272 i~~SAT~~~~ 281 (337)
++||||++..
T Consensus 354 il~SAT~~~~ 363 (666)
T 3o8b_A 354 VLATATPPGS 363 (666)
T ss_dssp EEEESSCTTC
T ss_pred EEECCCCCcc
Confidence 7889999985
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=2e-20 Score=161.65 Aligned_cols=139 Identities=22% Similarity=0.237 Sum_probs=110.5
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCc
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSV 191 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~ 191 (337)
..|+++|.+++..++.++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+..+ ++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~----~~ 158 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GE 158 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG----CG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhC----CC
Confidence 46899999999999999999999999999999988776542 457999999999999988888763 56
Q ss_pred E-EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 192 E-VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 192 ~-v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
. +..+.|+.. ...+|+|+|++.+...... ....+++|||||||++....|.. +...++ ..+
T Consensus 159 ~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~ 220 (237)
T 2fz4_A 159 EYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APF 220 (237)
T ss_dssp GGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSE
T ss_pred CeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhcc-CCE
Confidence 6 777777654 2469999999998876643 13458999999999998776643 444444 678
Q ss_pred EEEEeecCchh
Q psy3143 271 TMLFSATMTDA 281 (337)
Q Consensus 271 ~i~~SAT~~~~ 281 (337)
++++|||++..
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 89999998753
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.80 E-value=7.5e-21 Score=186.76 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=110.9
Q ss_pred HHHhCCCC-----CChHHHH-----HHHHHHh------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEE
Q psy3143 105 AIGALNYI-----YPTPIQA-----ATIPVAL------LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVL 168 (337)
Q Consensus 105 ~l~~~~~~-----~p~~~Q~-----~~i~~~~------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil 168 (337)
++..+||. .|+++|+ ++||.++ .+++++++||||||||++|++|+++.+.. .++++||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----~~~~~lil 276 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----KRLRTAVL 276 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----TTCCEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEE
Confidence 44556666 8999999 9999888 89999999999999999999999988753 35789999
Q ss_pred cCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy3143 169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADR 248 (337)
Q Consensus 169 ~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~ 248 (337)
+||++||.|+++.+..+. +. ...+... ..-..+.-+-+.+.+.+...+.. ...++++++|||||||+
T Consensus 277 aPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHF 343 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTC
T ss_pred ccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcc
Confidence 999999999998877442 21 1111000 00011112344455555544444 34689999999999999
Q ss_pred cccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHHHH
Q psy3143 249 MLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVNDLV 286 (337)
Q Consensus 249 l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~~~ 286 (337)
+ +..+...+..+...+ +...|+++||||+++.+..+.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~ 381 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFP 381 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhc
Confidence 8 333334444444444 367899999999998765443
No 68
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.79 E-value=4.4e-19 Score=166.55 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|++++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----
Confidence 37899999999999999999999966642 35689999999999999887765 3455544443211
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEeecCchhHHH
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSATMTDAVND 284 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SAT~~~~~~~ 284 (337)
.-..+.-+.++|.+.+...+.. ...++++++|||||||++ +.++......+.... +...|+++||||+++.+..
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred -cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122346778899988777666 455899999999999997 555544544444443 5689999999999986544
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=1.8e-19 Score=170.51 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=102.3
Q ss_pred HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHH
Q psy3143 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~ 203 (337)
.+..+++++++||||||||++|++|+++.+.. .++++||++|||+||.|+++.+. +..+....+.....
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE 85 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC
Confidence 45678899999999999999999999988753 35789999999999999988876 23333222211100
Q ss_pred HHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEeccccc-----ccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM-----LDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 204 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l-----~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
-..+.-+.++|.+.+...+.. ...++++++|||||||++ +..+|...+ ......|+++||||+
T Consensus 86 -----~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~-----~~~~~~~~il~SAT~ 153 (459)
T 2z83_A 86 -----HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATK-----VELGEAAAIFMTATP 153 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH-----HHTTSCEEEEECSSC
T ss_pred -----CCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHH-----hccCCccEEEEEcCC
Confidence 122336788999988877766 356899999999999984 333332221 124678999999999
Q ss_pred chhHHHHHHhhCCCCeEE
Q psy3143 279 TDAVNDLVSVSLTRPVRV 296 (337)
Q Consensus 279 ~~~~~~~~~~~~~~p~~i 296 (337)
+..+..+... ..|+.+
T Consensus 154 ~~~~~~~~~~--~~pi~~ 169 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHD 169 (459)
T ss_dssp TTCCCSSCCC--SSCEEE
T ss_pred CcchhhhccC--CCCeEE
Confidence 9875443322 345544
No 70
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.79 E-value=2.7e-19 Score=174.82 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCChHHHHHHHHHHhC----C-CCEEEEcCCCCchhHHhHHHHHHHhhcCC----CCCCCeeEEEEcCCHHHHHHHH-HH
Q psy3143 112 IYPTPIQAATIPVALL----G-RDICGCAATGTGKTAAFMLPILERLLYKP----RDDQNTRVLVLVPTRELGVQVY-QV 181 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~----~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~~~~lil~Pt~~La~q~~-~~ 181 (337)
..|+++|.++++.++. + ++++++++||+|||++++.. +..++... ....++++|||+||++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999998875 4 56899999999999996554 44443322 1124678999999999999988 66
Q ss_pred HHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcC---CCCCCCCccEEEEecccccccccHHHHH
Q psy3143 182 TRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT---PSFSLSDIEVLVLDEADRMLDEHFASQM 258 (337)
Q Consensus 182 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~~~~iViDEad~l~~~~~~~~~ 258 (337)
+..++ ..+..+.++ ......+|+|+||++|...+... ..+....+++||+||||++.... ...+
T Consensus 256 ~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 66543 233333322 23345799999999998875421 13446779999999999987543 2455
Q ss_pred HHHHHHcCCCCeEEEEeecCchhH
Q psy3143 259 KEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 259 ~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
..++..++ ..++++||||+....
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~ 345 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLRED 345 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTT
T ss_pred HHHHHhCC-cceEEEecccccccc
Confidence 66666665 468999999987543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.77 E-value=1.6e-18 Score=176.79 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=114.9
Q ss_pred CCChHHHHHHHHHHhC--------------CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 112 IYPTPIQAATIPVALL--------------GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
..|+++|..|++.++. +++.+++++||||||+++ ++++..+. .. ....++|||+|+++|+.|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~-~~--~~~~rvLvlvpr~eL~~Q 345 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT-EL--DFIDKVFFVVDRKDLDYQ 345 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT-TC--TTCCEEEEEECGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH-hc--CCCceEEEEeCcHHHHHH
Confidence 3599999999998875 368999999999999997 66665543 21 224689999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEeCCccHHHHHHHHh-cCCCEEEECcHHHHHHHhcCCCC-CCCCccEEEEecccccccccHH
Q psy3143 178 VYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSF-SLSDIEVLVLDEADRMLDEHFA 255 (337)
Q Consensus 178 ~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~~~~iViDEad~l~~~~~~ 255 (337)
+...+..++.. .+.++.+.......+. ..++|+|+||++|..++.....+ .+..+.+||+||||++...+
T Consensus 346 ~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~-- 417 (1038)
T 2w00_A 346 TMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE-- 417 (1038)
T ss_dssp HHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH--
T ss_pred HHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchH--
Confidence 99988887643 1234444444444443 56799999999999887653222 35678999999999976433
Q ss_pred HHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 256 SQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 256 ~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
....|...++ +.++++||||+..
T Consensus 418 -~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 418 -AQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp -HHHHHHHHCS-SEEEEEEESSCCC
T ss_pred -HHHHHHHhCC-cccEEEEeCCccc
Confidence 3455666665 4799999999874
No 72
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=1.8e-18 Score=162.74 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=96.2
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~ 204 (337)
++.|++++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.+..+ .+....+...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~--- 70 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS--- 70 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---
Confidence 5689999999999999999999999997753 2568999999999999999887743 2222211100
Q ss_pred HHHHHhcCCCEEEECcHHHHHHHhcC-------CCCCCCCccEEEEecccccccccHHHHHHHHHHHc-CCCCeEEEEee
Q psy3143 205 QESVLRKCPDIVIATPGRLLDHLHNT-------PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRTRQTMLFSA 276 (337)
Q Consensus 205 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~-~~~~q~i~~SA 276 (337)
.|+||++++.++... ....++++++||+||||++ +.++...+..+...+ +...|+++|||
T Consensus 71 -----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 71 -----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp -----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred -----------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 366775554322210 1345889999999999998 444444444443333 46799999999
Q ss_pred cCchhHHHHH
Q psy3143 277 TMTDAVNDLV 286 (337)
Q Consensus 277 T~~~~~~~~~ 286 (337)
|+++.+..+.
T Consensus 139 T~~~~~~~~~ 148 (440)
T 1yks_A 139 TPPGTSDEFP 148 (440)
T ss_dssp SCTTCCCSSC
T ss_pred CCCchhhhhh
Confidence 9998765443
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=2.7e-17 Score=159.15 Aligned_cols=129 Identities=18% Similarity=0.075 Sum_probs=101.3
Q ss_pred CChHHHHHHHHH----HhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPV----ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|++.|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.+.+..+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------~~~v~i~~pt~~l~~q~~~~~~~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------KPKVLFVVRTHNEFYPIYRDLTKIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------CSEEEEEESSGGGHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------CCeEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 589999997764 4578999999999999999999999972 578999999999999999999988777
Q ss_pred cCcEEEEEeCCccH---------------------------------HHHH------------------HHHhcCCCEEE
Q psy3143 189 TSVEVALSVGGLEV---------------------------------KVQE------------------SVLRKCPDIVI 217 (337)
Q Consensus 189 ~~~~v~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~Ilv 217 (337)
.++++..+.|+.+. .... +.....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 77888877664321 0111 12224579999
Q ss_pred ECcHHHHHHHhcCCCCCC-CCccEEEEeccccccc
Q psy3143 218 ATPGRLLDHLHNTPSFSL-SDIEVLVLDEADRMLD 251 (337)
Q Consensus 218 ~Tp~~l~~~l~~~~~~~l-~~~~~iViDEad~l~~ 251 (337)
+|++.|++...+.. +.+ ....++||||||.|.+
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 99999998765432 322 4678999999999886
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.69 E-value=2.2e-17 Score=161.86 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=101.3
Q ss_pred HHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccH
Q psy3143 123 PVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202 (337)
Q Consensus 123 ~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~ 202 (337)
...+.+++++++||||||||+ +++..+... .+++|++|||+||.|+++.+..+ ++.+..+.|+...
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHS------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 345688999999999999998 333444322 24599999999999999998875 5778888887553
Q ss_pred HHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcC-CCCeEEEEeecCchh
Q psy3143 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQTMLFSATMTDA 281 (337)
Q Consensus 203 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~-~~~q~i~~SAT~~~~ 281 (337)
.. .......+++++|++.+. ....+++|||||||++++.+|...+..++..++ ...|++++|||. +.
T Consensus 216 iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~ 283 (677)
T 3rc3_A 216 TV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DL 283 (677)
T ss_dssp CC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HH
T ss_pred Ee--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HH
Confidence 00 000112467777753221 246789999999999999999988888888877 678999999995 34
Q ss_pred HHHHHHh
Q psy3143 282 VNDLVSV 288 (337)
Q Consensus 282 ~~~~~~~ 288 (337)
+..+...
T Consensus 284 i~~l~~~ 290 (677)
T 3rc3_A 284 VMELMYT 290 (677)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.63 E-value=1.1e-15 Score=146.31 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHH----hCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVA----LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|+|+|.+++..+ ..+++++++.+||+|||++++..+.... .. ....++|||+|+ .|+.|+.+.+.++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~---~~~~~~LIv~P~-~l~~qw~~e~~~~~~- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KE---NELTPSLVICPL-SVLKNWEEELSKFAP- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HT---TCCSSEEEEECS-TTHHHHHHHHHHHCT-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hc---CCCCCEEEEccH-HHHHHHHHHHHHHCC-
Confidence 5899999999876 4678999999999999999765444433 22 234579999995 588999988888764
Q ss_pred cCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCC
Q psy3143 189 TSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~ 268 (337)
+.++..+.|+... .....++|+|+|++.+..... +....+++||+||||++-..+. .....+..++ .
T Consensus 111 -~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 111 -HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp -TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred -CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 4566666665421 122446999999999876432 2345689999999999865541 2333334443 4
Q ss_pred CeEEEEeecCch
Q psy3143 269 RQTMLFSATMTD 280 (337)
Q Consensus 269 ~q~i~~SAT~~~ 280 (337)
.+.+++|||+..
T Consensus 178 ~~~l~LTaTP~~ 189 (500)
T 1z63_A 178 KYRIALTGTPIE 189 (500)
T ss_dssp EEEEEECSSCST
T ss_pred CcEEEEecCCCC
Confidence 567999999853
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=1.3e-15 Score=146.93 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCCCChHHHHHHHH----HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 109 LNYIYPTPIQAATIP----VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 109 ~~~~~p~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|| .|+++|.+++. .+..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 355 78999999865 45688999999999999999999998764 56899999999999999987776
Q ss_pred HhhccCcEEEEEeCCccH--------HH---------------------------------------HHHHHhcCCCEEE
Q psy3143 185 LAQFTSVEVALSVGGLEV--------KV---------------------------------------QESVLRKCPDIVI 217 (337)
Q Consensus 185 l~~~~~~~v~~~~~~~~~--------~~---------------------------------------~~~~~~~~~~Ilv 217 (337)
+ ++++..+.|.... .. ..+.....++|+|
T Consensus 74 l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 74 L----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp G----TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred c----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 4 3444433332210 00 0001123469999
Q ss_pred ECcHHHHHHHhcCCCC------CCCCccEEEEecccccc
Q psy3143 218 ATPGRLLDHLHNTPSF------SLSDIEVLVLDEADRML 250 (337)
Q Consensus 218 ~Tp~~l~~~l~~~~~~------~l~~~~~iViDEad~l~ 250 (337)
+|++.|++........ .+....++||||||.|.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999998754331111 24667899999999984
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.59 E-value=1.5e-15 Score=155.55 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=106.6
Q ss_pred CCChHHHHHHHHHHhCC--CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 112 IYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
..|+|+|..++..++.. ..++++++||+|||++++..+...+.. +...++|||+|+ .|+.|+...+....
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----g~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----GAAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----SSCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 35899999999988764 489999999999999998777666532 124479999999 99999888776544
Q ss_pred CcEEEEEeCCccHHHHHH--HHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHH--HHHHHHHHHc
Q psy3143 190 SVEVALSVGGLEVKVQES--VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA--SQMKEIIRLC 265 (337)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~--~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~--~~~~~i~~~~ 265 (337)
++.+..+.+......... ......+|+|+|++.+.........+....+++|||||||++...+.. .....+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 455555544322211111 111246999999998865322111233567899999999998654321 1122233333
Q ss_pred CCCCeEEEEeecCc
Q psy3143 266 SRTRQTMLFSATMT 279 (337)
Q Consensus 266 ~~~~q~i~~SAT~~ 279 (337)
....+++++|||+.
T Consensus 304 ~~~~~~L~LTATPi 317 (968)
T 3dmq_A 304 EHVPGVLLLTATPE 317 (968)
T ss_dssp TTCSSEEESCSSCS
T ss_pred hcCCcEEEEEcCCc
Confidence 34567899999984
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.52 E-value=2.9e-13 Score=133.12 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=108.3
Q ss_pred CChHHHHHHHHHHh---------CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCC-CCeeEEEEcCCHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVAL---------LGRDICGCAATGTGKTAAFMLPILERLLYKPRDD-QNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.+.|+|..++..+. .++..|++.+||+|||++++..+...+...+... ...++|||+|+ .|+.|+.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 57899999998874 4567999999999999998777666554332211 23569999997 7888888888
Q ss_pred HHHhhccCcEEEEEeCCccHHHHH---HHHh-----cCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH
Q psy3143 183 RQLAQFTSVEVALSVGGLEVKVQE---SVLR-----KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254 (337)
Q Consensus 183 ~~l~~~~~~~v~~~~~~~~~~~~~---~~~~-----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~ 254 (337)
.++... .+.+..+.++....... .... ..++|+|+|++.+..... .+....+++||+||||++-+...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChhh
Confidence 887654 45555666655432211 1111 136899999999886542 33445789999999999865431
Q ss_pred HHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 255 ASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 255 ~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.....+..+. ....+++|||+-.
T Consensus 210 --~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 210 --QTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSG
T ss_pred --HHHHHHHhcc-cCcEEEEecCccc
Confidence 2222233333 4467899999743
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.5e-13 Score=138.40 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHh----CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVAL----LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.++++|..++..+. .++++|++.+||+|||++++..+...+.... ..+.+||||| ..|+.|+.+.+..++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~---~~~~~LIV~P-~sll~qW~~E~~~~~p- 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR---QNGPHIIVVP-LSTMPAWLDTFEKWAP- 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS---CCSCEEEECC-TTTHHHHHHHHHHHST-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC---CCCCEEEEEC-chHHHHHHHHHHHHCC-
Confidence 56899999998765 7889999999999999998766655443222 2456999999 6778888888877653
Q ss_pred cCcEEEEEeCCccHHHHHHH------------HhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 189 TSVEVALSVGGLEVKVQESV------------LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 189 ~~~~v~~~~~~~~~~~~~~~------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
++.+..++|+......... ....++|+|+|++.+...... +....+++|||||||++-..+ .
T Consensus 311 -~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s 384 (800)
T 3mwy_W 311 -DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--S 384 (800)
T ss_dssp -TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--S
T ss_pred -CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--h
Confidence 5677777776654433222 123468999999999775432 222358899999999985432 1
Q ss_pred HHHHHHHHcCCCCeEEEEeecC
Q psy3143 257 QMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 257 ~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
.....+..++ ....+++|||+
T Consensus 385 ~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 385 SLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp HHHHHHTTSE-EEEEEEECSCC
T ss_pred HHHHHHHHhh-hccEEEeeCCc
Confidence 2233333333 34568899997
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.28 E-value=3.4e-11 Score=116.42 Aligned_cols=130 Identities=20% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.-+|+++|....-.+..|+ |....||+|||+++.+|++-..+ .|..+.|++||+.||.|-+.++..+..++|
T Consensus 73 g~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------~G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 73 GMRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------IGKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp SCCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------cCCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 3468999998888888777 89999999999999999975543 366799999999999999999999999999
Q ss_pred cEEEEEeCC--------------------------------------------------ccHHHHHHHHhcCCCEEEECc
Q psy3143 191 VEVALSVGG--------------------------------------------------LEVKVQESVLRKCPDIVIATP 220 (337)
Q Consensus 191 ~~v~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ilv~Tp 220 (337)
+.++++... ........ ...+||.+||.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEEccC
Confidence 999998872 11111111 22369999999
Q ss_pred HHH-HHHHhcC-----CCCCCCCccEEEEecccccc
Q psy3143 221 GRL-LDHLHNT-----PSFSLSDIEVLVLDEADRML 250 (337)
Q Consensus 221 ~~l-~~~l~~~-----~~~~l~~~~~iViDEad~l~ 250 (337)
.-+ .++|..+ .......+.|.||||+|.++
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 765 3444322 12235778999999999865
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.17 E-value=7.7e-11 Score=114.93 Aligned_cols=145 Identities=21% Similarity=0.265 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchh--HHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKT--AAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT--~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
++.|..+++.++.++.++++|++|+||| ++++++.+..+. ...+.++++++||..+|.++.+.+.......++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~----~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA----DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC----SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh----hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999 556777766542 1235689999999999999988877665544322
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
.... .+... .. ..-..++-.+|+.. . +... ......+++||||||+ |++ ...+..++..++...|+|
T Consensus 227 ~~~~-~~~~~--~~---~Tih~ll~~~~~~~-~-~~~~-~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQK-KRIPE--DA---STLHRLLGAQPGSQ-R-LRHH-AGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCC-CSCSC--CC---BTTTSCC-------------C-TTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred HHHH-hccch--hh---hhhHhhhccCCCch-H-HHhc-cCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 1100 00000 00 00011222233221 1 1111 1122378999999999 554 456777888888899999
Q ss_pred EEee
Q psy3143 273 LFSA 276 (337)
Q Consensus 273 ~~SA 276 (337)
++.=
T Consensus 294 LvGD 297 (608)
T 1w36_D 294 FLGD 297 (608)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9874
No 82
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.11 E-value=9.1e-11 Score=114.56 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=69.9
Q ss_pred CChHHHHHHHH----HHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIP----VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.|++.|.+.+. .+..|+++++.||||+|||++|++|++..+.. .+.+++|++||++++.|+.+.+..+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----~~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----RKLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----HTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----cCCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 57899988875 45689999999999999999999999998742 2568999999999999999999998887
Q ss_pred cCcEEEEEeCCc
Q psy3143 189 TSVEVALSVGGL 200 (337)
Q Consensus 189 ~~~~v~~~~~~~ 200 (337)
.++++..+.|+.
T Consensus 78 ~~~~~~~l~gr~ 89 (620)
T 4a15_A 78 MKIRAIPMQGRV 89 (620)
T ss_dssp SCCCEEECCCHH
T ss_pred cCeEEEEEECCC
Confidence 778877776644
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.53 E-value=8.1e-07 Score=83.70 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=79.1
Q ss_pred HhCCCCCChHHHHHHHHHHhCC-----CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHH
Q psy3143 107 GALNYIYPTPIQAATIPVALLG-----RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQV 181 (337)
Q Consensus 107 ~~~~~~~p~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~ 181 (337)
.-+.|..+++-|..++..++.. +.++|.|+.|||||... ..++..+.... ..++++++||...|..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~----~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG----ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT----CCCEEEEESSHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC----CceEEEecCcHHHHHHHHhh
Confidence 3356677899999999876532 38999999999999764 33444443221 23699999999887766544
Q ss_pred HHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHH
Q psy3143 182 TRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261 (337)
Q Consensus 182 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i 261 (337)
+ +..+..++ ..+.. -..+.+... .+.......+..+++|||||++.+. ...+..+
T Consensus 94 ~-------~~~~~T~h---------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l 148 (459)
T 3upu_A 94 S-------GKEASTIH---------SILKI----NPVTYEENV-LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKIL 148 (459)
T ss_dssp H-------SSCEEEHH---------HHHTE----EEEECSSCE-EEEECSCCCCSSCSEEEESCGGGCC----HHHHHHH
T ss_pred h-------ccchhhHH---------HHhcc----Ccccccccc-hhcccccccccCCCEEEEECchhCC----HHHHHHH
Confidence 3 11111111 11110 000000000 0000112346678999999999654 2344555
Q ss_pred HHHcCCCCeEEEEe
Q psy3143 262 IRLCSRTRQTMLFS 275 (337)
Q Consensus 262 ~~~~~~~~q~i~~S 275 (337)
+..++...+++++.
T Consensus 149 ~~~~~~~~~~~~vG 162 (459)
T 3upu_A 149 LSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HHhccCCCEEEEEC
Confidence 56666666666665
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.50 E-value=7.4e-07 Score=86.09 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcE
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~ 192 (337)
.+++.|..++..++.++.+++.|++|+|||.... .++..+.. .+.++++++||...+..+...+. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-----~g~~Vl~~ApT~~Aa~~L~e~~~-------~~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES-----LGLEVGLCAPTGKAARRLGEVTG-------RT 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH-----TTCCEEEEESSHHHHHHHHHHHT-------SC
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh-----cCCeEEEecCcHHHHHHhHhhhc-------cc
Confidence 4689999999999999999999999999997643 23333321 35679999999998877654321 11
Q ss_pred EEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEE
Q psy3143 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272 (337)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i 272 (337)
...+ .+.+...+ + .+.. .......+++||||||+++. ...+..+++.++...+++
T Consensus 256 a~Ti---------h~ll~~~~-----~------~~~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ASTV---------HRLLGYGP-----Q------GFRH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEEH---------HHHTTEET-----T------EESC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred HHHH---------HHHHcCCc-----c------hhhh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 1111 11111000 0 0011 11224467999999999754 235556677777777777
Q ss_pred EEe
Q psy3143 273 LFS 275 (337)
Q Consensus 273 ~~S 275 (337)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.48 E-value=3e-06 Score=82.86 Aligned_cols=70 Identities=23% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
...+++.|..|+..++.+.-++|.||+|+|||....- ++..+... .+.++++++||...+.++...+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS----SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc----CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3457899999999998888889999999999987544 33344321 3568999999999999988877653
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.3e-06 Score=83.77 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
+..+++.|..|+..++.+.-++|.||+|+|||....-.+ ..+... .+.++|+++||...+.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 345789999999999887778999999999998754333 333211 2568999999999999998888764
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.38 E-value=7.1e-06 Score=82.14 Aligned_cols=70 Identities=23% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 111 YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 111 ~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
...+++.|..|+..++.+.-++|.||+|+|||....- ++..+... .+.++++++||...+.++...+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT----CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc----CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3457899999999998888889999999999987543 34444321 3568999999999999988777653
No 88
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.33 E-value=1.7e-06 Score=84.97 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHhCCCC-EEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHH
Q psy3143 113 YPTPIQAATIPVALLGRD-ICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l 185 (337)
.+++-|.+|+..++..++ .+|+||+|+|||...+-.+.+.+. .+.++|+++||...+.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999887764 689999999999876554444442 3568999999999999988877653
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.79 E-value=0.00017 Score=65.82 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF 188 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~ 188 (337)
.++++|...+..+...+-+++..+-+.|||.+....++..+... .+..++++.||+..|..++..+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67999999998765556789999999999998777666554432 3567999999999999888888776654
No 90
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.54 E-value=0.00095 Score=64.74 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhcc
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~ 189 (337)
.++++|...+..+...+-+++.++-|+|||.+....++..+... ++.+++++.|++..|..++..++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~----~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS----SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 47999999998775567899999999999998776655555432 24589999999999999988888776544
No 91
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.53 E-value=0.00017 Score=70.92 Aligned_cols=68 Identities=31% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCCChHHHHHHHHHHh----CCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 110 NYIYPTPIQAATIPVAL----LGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 110 ~~~~p~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
+| .|+..|.+++..+. .|. ..++.|.||||||+.+.- ++..+ +..+|||+|+..+|.|++..++.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--------~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--------GRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------CCCEEEEecCHHHHHHHHHHHHH
Confidence 45 78999998887654 333 467899999999987653 33333 22499999999999999999998
Q ss_pred Hhh
Q psy3143 185 LAQ 187 (337)
Q Consensus 185 l~~ 187 (337)
+..
T Consensus 76 ~~~ 78 (664)
T 1c4o_A 76 LFP 78 (664)
T ss_dssp HCT
T ss_pred HCC
Confidence 863
No 92
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.50 E-value=0.00049 Score=63.66 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=54.0
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 209 (337)
-.++.|+.|+|||.... +.+. ..+.+|++||++++..+.+.+.... ..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~----~~----------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVN-------FEEDLILVPGRQAAEMIRRRANASG----II----------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCC-------TTTCEEEESCHHHHHHHHHHHTTTS----CC-----------------
T ss_pred EEEEEcCCCCCHHHHHH----HHhc-------cCCeEEEeCCHHHHHHHHHHhhhcC----cc-----------------
Confidence 35789999999998642 2221 1357999999999988776654221 00
Q ss_pred hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHH
Q psy3143 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256 (337)
Q Consensus 210 ~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~ 256 (337)
.....-|.|-+.++. +........+++||||||- |+..++..
T Consensus 211 -~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~s-m~~~~~l~ 252 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGL-MLHTGCVN 252 (446)
T ss_dssp -CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGG-GSCHHHHH
T ss_pred -ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcc-cCCHHHHH
Confidence 001233566554432 3222223358999999998 44555433
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=0.00057 Score=55.32 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.4
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|+.++++||+|+|||.....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999986543
No 94
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.44 E-value=0.00016 Score=60.88 Aligned_cols=114 Identities=14% Similarity=0.159 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|.-++++|++|+|||++.+-.+..... .+.+++++.|...-- . ...+....++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~r---~--~~~i~srlG~~-------------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDTR---S--IRNIQSRTGTS-------------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCGG---G--CSSCCCCCCCS--------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCch---H--HHHHHHhcCCC--------------
Confidence 3556788999999999887655544432 355789887764210 0 00111111110
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
...+-+.+...++..+.. ...-..+++|||||++.+.. .....+..+.. ...++|++.-
T Consensus 66 -----~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 66 -----LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFDD-RICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp -----SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSCT-HHHHHHHHHHH---TTCEEEEECC
T ss_pred -----ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCcH-HHHHHHHHHHh---CCCeEEEEec
Confidence 013445667777777765 22234589999999996532 23334444333 3566666554
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.44 E-value=0.00027 Score=69.26 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc--c
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF--T 189 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~--~ 189 (337)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... ...+.++|++++|+..+.++.+.+..+... .
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~ 83 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQG 83 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS--CCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCT
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC--CCChhhEEEEeccHHHHHHHHHHHHHHhccccC
Confidence 3568999999973 467899999999999988655555444321 123568999999999999999988876432 2
Q ss_pred CcEEEEE
Q psy3143 190 SVEVALS 196 (337)
Q Consensus 190 ~~~v~~~ 196 (337)
++.+..+
T Consensus 84 ~~~v~Tf 90 (647)
T 3lfu_A 84 GMWVGTF 90 (647)
T ss_dssp TCEEEEH
T ss_pred CcEEEcH
Confidence 3444444
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=0.00088 Score=54.63 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=27.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.|+-.+++|++|+|||+..+--+..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeecc
Confidence 3566789999999999886544443331 245788888873
No 97
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0066 Score=53.82 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=41.3
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhHHHHHHhhCCCCeEEEeCCCccccCCeeEEEEEec
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~q~~~~~~ 316 (337)
..-+|||||+|.+.++.....+.++...-....-+|+.++|+...-..+... .........+.+.
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~---------------v~SR~~~~~i~F~ 196 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIM---------------PSLKAHFTEIKLN 196 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTC---------------HHHHTTEEEEECC
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchh---------------hhccCCceEEEeC
Confidence 4568999999998854433333322222223345566677763211111110 0000111234566
Q ss_pred CcchhhHHHHHHHhhh
Q psy3143 317 NIDEVRLYNVLGLMLL 332 (337)
Q Consensus 317 ~~~~~~~~~~L~~ll~ 332 (337)
+-+..+...+|+.-|.
T Consensus 197 pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 197 KVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6677778887777664
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.26 E-value=0.0005 Score=54.06 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.5
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|+.+++.||+|+|||...-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999976433
No 99
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.23 E-value=0.00061 Score=55.93 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|+=.+++|++|||||++.+--+.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEecc
Confidence 45578899999999988665444433 2366799998873
No 100
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.0031 Score=58.37 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=74.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
+-++++|++|+|||+.....+.. +. . .+.+++++. +.|.-+.. .+..++...++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~-~----~G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~------ 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YK-K----RGYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQ------ 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HH-H----TTCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCS------
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HH-H----cCCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccC------
Confidence 35778999999999876443322 21 1 245666655 44544332 33333443444332221111
Q ss_pred HHHhcCCCEEEECcHHHH-HHHhcCCCCCCCCccEEEEecccccc---cccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 207 SVLRKCPDIVIATPGRLL-DHLHNTPSFSLSDIEVLVLDEADRML---DEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~-~~l~~~~~~~l~~~~~iViDEad~l~---~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
.|..+. ..+.. .....++++|||.+-++. +..+...+..+.+...+..-+++++|+...+.
T Consensus 163 ------------dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 163 ------------NPIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp ------------CHHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred ------------CHHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 122222 12222 123468899999998653 44567777778777777777788899877665
Q ss_pred HHHHHhh
Q psy3143 283 NDLVSVS 289 (337)
Q Consensus 283 ~~~~~~~ 289 (337)
...+..|
T Consensus 228 ~~~a~~f 234 (433)
T 3kl4_A 228 YDLASRF 234 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 101
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.13 E-value=0.0026 Score=56.62 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+..++++||+|+|||...-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46899999999999987533
No 102
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.06 E-value=0.0014 Score=65.17 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc--c
Q psy3143 112 IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF--T 189 (337)
Q Consensus 112 ~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~--~ 189 (337)
..+++-|.+|+.. ....++|.|+.|||||.+..--+.+.+... .....++|+|+.|+..|.++.+.+..+... .
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 3578999999875 457899999999999988655555544321 123568999999999999998888876432 2
Q ss_pred CcEEEEEe
Q psy3143 190 SVEVALSV 197 (337)
Q Consensus 190 ~~~v~~~~ 197 (337)
++.+..++
T Consensus 86 ~~~v~Tfh 93 (724)
T 1pjr_A 86 DVWISTFH 93 (724)
T ss_dssp TSEEEEHH
T ss_pred CcEEeeHH
Confidence 45555543
No 103
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.05 E-value=0.0013 Score=69.28 Aligned_cols=72 Identities=24% Similarity=0.213 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
.+|+-|.++|.. .+++++|.|..|||||.+.+-=++..+..........++|++++|+..|..+...+....
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 468999999875 488999999999999998766666666432222245689999999999999988887643
No 104
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.03 E-value=0.00059 Score=67.28 Aligned_cols=81 Identities=14% Similarity=0.025 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhc---c
Q psy3143 113 YPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF---T 189 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~---~ 189 (337)
.+++-|.+++.. .+..++|.|+.|||||.+..--+.+.+.... ....++|+|+.|+..|.++.+.+..+... .
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~ 77 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--YQARHIAAVTFTNKAAREMKERVGQTLGRKEAR 77 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC--CCHHHeEEEeccHHHHHHHHHHHHHHcCccccc
Confidence 368999999875 4678999999999999886554544443211 13568999999999999999988876432 2
Q ss_pred CcEEEEEe
Q psy3143 190 SVEVALSV 197 (337)
Q Consensus 190 ~~~v~~~~ 197 (337)
++.|..++
T Consensus 78 ~~~v~Tfh 85 (673)
T 1uaa_A 78 GLMISTFH 85 (673)
T ss_dssp TSEEEEHH
T ss_pred CCEEEeHH
Confidence 45565544
No 105
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.96 E-value=0.0013 Score=54.74 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
|+=.+++|+.|+|||++.+--+..... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEeccC
Confidence 444568999999999887665555542 3667999998753
No 106
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.88 E-value=0.0021 Score=62.42 Aligned_cols=114 Identities=22% Similarity=0.243 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHhC--CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccC
Q psy3143 113 YPTPIQAATIPVALL--GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS 190 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~ 190 (337)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+.+-... .+++|++|+.+-+..+++....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---------~~~~vtAP~~~a~~~l~~~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---------GRAIVTAPAKASTDVLAQFAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---------SCEEEECSSCCSCHHHHHHHGG------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---------hCcEEECCCHHHHHHHHHHhhC------
Confidence 579999999988876 33578999999999977655444321 2479999999876644332110
Q ss_pred cEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCe
Q psy3143 191 VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270 (337)
Q Consensus 191 ~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q 270 (337)
.|-+..|..+.. . +...+++|||||=.+. .+.+..++. ...
T Consensus 240 -----------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaIp----~pll~~ll~----~~~ 280 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAIP----APLLHQLVS----RFP 280 (671)
T ss_dssp -----------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGSC----HHHHHHHHT----TSS
T ss_pred -----------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcCC----HHHHHHHHh----hCC
Confidence 144456765442 1 3358999999998764 344555544 223
Q ss_pred EEEEeecCch
Q psy3143 271 TMLFSATMTD 280 (337)
Q Consensus 271 ~i~~SAT~~~ 280 (337)
.++||.|+..
T Consensus 281 ~v~~~tTv~G 290 (671)
T 2zpa_A 281 RTLLTTTVQG 290 (671)
T ss_dssp EEEEEEEBSS
T ss_pred eEEEEecCCc
Confidence 4667777653
No 107
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.87 E-value=0.0042 Score=52.17 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
.|+=.+++|+.|+|||.+.+--+.... ..+.+++++.|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH------HCCCeEEEEeecCC
Confidence 466678899999999988766555544 24667999988753
No 108
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.86 E-value=0.0034 Score=51.32 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|+=.+++|++|||||...+-.+-+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEccc
Confidence 3566789999999999766555544443 24679999887
No 109
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.85 E-value=0.0034 Score=61.64 Aligned_cols=66 Identities=26% Similarity=0.321 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHh----CCC-CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 113 YPTPIQAATIPVAL----LGR-DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 113 ~p~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.|+..|..++..+. .|. ..++.|.||||||+...- ++... +..+|||+|+..+|.|++..++.+..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~--------~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV--------NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh--------CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 57888888877544 343 467889999999987543 33333 22499999999999999999999853
No 110
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.79 E-value=0.011 Score=52.37 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
...++|||||+|.+........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 46789999999998623334455555555555666665433
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.75 E-value=0.027 Score=48.51 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+.++++||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998754
No 112
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.74 E-value=0.0057 Score=50.77 Aligned_cols=107 Identities=14% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|.=.+++|+.|+|||+..+--+..... .+.+++++.|...--.. ...+....++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~------~g~kvli~kp~~D~R~~----~~~I~Sr~G~~~------------- 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY------AKQKVVVFKPAIDDRYH----KEKVVSHNGNAI------------- 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC---------------CBTTBCC-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH------cCCceEEEEeccCCcch----hhhHHHhcCCce-------------
Confidence 3556789999999999876544433331 25679999986531100 011111112111
Q ss_pred HHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEE
Q psy3143 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273 (337)
Q Consensus 207 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~ 273 (337)
.-+.|..+.-+...+ ...+++|+||||+-+. ......+..+. . .+..+++
T Consensus 84 ------~a~~v~~~~di~~~i-------~~~~dvV~IDEaQFf~-~~~v~~l~~la-~--~gi~Vi~ 133 (219)
T 3e2i_A 84 ------EAINISKASEIMTHD-------LTNVDVIGIDEVQFFD-DEIVSIVEKLS-A--DGHRVIV 133 (219)
T ss_dssp ------EEEEESSGGGGGGSC-------CTTCSEEEECCGGGSC-THHHHHHHHHH-H--TTCEEEE
T ss_pred ------eeEEeCCHHHHHHHH-------hcCCCEEEEechhcCC-HHHHHHHHHHH-H--CCCEEEE
Confidence 123444443332221 2467899999999654 44555666665 2 3444443
No 113
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.72 E-value=0.016 Score=53.71 Aligned_cols=56 Identities=23% Similarity=0.144 Sum_probs=33.0
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHHHHHHHHHHhhccCcEEE
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQVYQVTRQLAQFTSVEVA 194 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q~~~~~~~l~~~~~~~v~ 194 (337)
-++++|++|+|||+...-.+. .+. . .+.+++++. |.|.-+.. .+..++...++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~-~----~G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQ-K----RGYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHH-T----TTCCEEEEECCCSSTHHHH---HHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHH-H----CCCeEEEEeCCCcchhHHH---HHHHHHHhcCCcEE
Confidence 577899999999987644332 222 1 245676666 55554433 34444555556544
No 114
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.012 Score=48.18 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+.++++||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998653
No 115
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.63 E-value=0.0042 Score=52.18 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.9
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.++.++++||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999998653
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.58 E-value=0.02 Score=53.26 Aligned_cols=41 Identities=10% Similarity=0.307 Sum_probs=24.3
Q ss_pred CccEEEEecccccccc-cHHHHHHHHHHH-cCCCCeEEEEeec
Q psy3143 237 DIEVLVLDEADRMLDE-HFASQMKEIIRL-CSRTRQTMLFSAT 277 (337)
Q Consensus 237 ~~~~iViDEad~l~~~-~~~~~~~~i~~~-~~~~~q~i~~SAT 277 (337)
..++|+|||+|.+... .....+..++.. .....++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4579999999998763 233334444333 3445666654443
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.58 E-value=0.0071 Score=54.09 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=25.2
Q ss_pred hHHHHHHHHHH----hCCC---CEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 115 TPIQAATIPVA----LLGR---DICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 115 ~~~Q~~~i~~~----~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
.|+|..++..+ .+|+ .++++||+|+|||..... +...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 45666665443 3454 389999999999987654 334443
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0053 Score=55.56 Aligned_cols=20 Identities=35% Similarity=0.215 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.++.++++||+|+|||...-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34689999999999998653
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.014 Score=50.59 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=30.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHH-HHHHHHH--HhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPI-QAATIPV--ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~-Q~~~i~~--~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|.++.-....++.+...-. .+. ....+.. +..++.++++||+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457887777777766653210 000 0111111 124568999999999999765
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.025 Score=50.66 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=28.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
....+++|+||+|. ++......+..++...+....+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999999 55555566666776666665555555443
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.037 Score=45.41 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
..-.+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 456799999999875433 345555555555555555444
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0093 Score=54.03 Aligned_cols=19 Identities=32% Similarity=0.037 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3469999999999998753
No 123
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.28 E-value=0.012 Score=47.00 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.++++||+|+|||.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 124
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.24 E-value=0.056 Score=49.25 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 125
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.23 E-value=0.049 Score=48.34 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=29.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHh-----CCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL-----LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.+++-...+.+.|...-. .|.. .|.+. ..+.++++||+|+|||..+-
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 468888777777666643100 0000 01111 23679999999999997653
No 126
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.13 E-value=0.0098 Score=48.65 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH-HHHHHHHHHHHHhhccCcEEEEEeCCcc----H
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE-LGVQVYQVTRQLAQFTSVEVALSVGGLE----V 202 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~-La~q~~~~~~~l~~~~~~~v~~~~~~~~----~ 202 (337)
...+++..++|.|||.+++--++..+ +.+.+|+|+.-.+. ....-...+..+ ++.+...-.+.. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQN 97 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCC
Confidence 34789999999999999877777766 34778999953331 000001122222 233222111110 0
Q ss_pred HHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecccccccccH--HHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF--ASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 203 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~~--~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...... .....+..... .+.-..+++||+||+-..+..++ ...+..++...+...-+|+.+--.|+
T Consensus 98 ~~~~~~----------~a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 98 READTA----------ACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHH----------HHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred cHHHHH----------HHHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000000 00122222222 22235689999999976544332 24555666767777777777777777
Q ss_pred hHHHHHH
Q psy3143 281 AVNDLVS 287 (337)
Q Consensus 281 ~~~~~~~ 287 (337)
.+.+++.
T Consensus 166 ~l~e~AD 172 (196)
T 1g5t_A 166 DILDLAD 172 (196)
T ss_dssp HHHHHCS
T ss_pred HHHHhCc
Confidence 7777654
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.12 E-value=0.0064 Score=53.47 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.+++++||+|+|||...-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3479999999999998753
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.08 E-value=0.33 Score=40.00 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||+|+|||....
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997653
No 129
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.99 E-value=0.022 Score=45.58 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999998653
No 130
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.95 E-value=0.012 Score=52.35 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=29.9
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHH-----hCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVA-----LLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~-----~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.++.-...+.+.|...-. .+. ..|.+ ...+.++++||+|+|||..+-
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 468888777777776653210 000 00111 113579999999999998653
No 131
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.90 E-value=0.09 Score=46.66 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.+++++||+|+|||...-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999998653
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.037 Score=46.54 Aligned_cols=50 Identities=22% Similarity=0.058 Sum_probs=31.5
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 183 (337)
.|.-+++.|++|+|||...+..+...+. .+.+++++.-. .-..++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 4567899999999999876554444432 24467777643 23345544444
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.32 Score=42.55 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
....+|||||+|.+.... ...+..++...+....+|+ +++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~-~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFIL-SCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEE-EESCGG
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEE-EeCCcc
Confidence 456899999999875433 3445555555555555554 444443
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.67 E-value=0.025 Score=51.12 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.0
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.++++||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998753
No 135
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.64 E-value=0.17 Score=42.87 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||...-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 136
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.63 E-value=0.034 Score=50.06 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999998753
No 137
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.62 E-value=0.075 Score=44.51 Aligned_cols=45 Identities=16% Similarity=0.018 Sum_probs=26.6
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|.-+++.||+|+|||......+...++.......+..++++.-.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 456788999999999987665444433211001113456766543
No 138
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.065 Score=47.73 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
....+|+|||+|.+.... ...+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 356899999999876433 344555555555555555544
No 139
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.48 E-value=0.077 Score=47.06 Aligned_cols=57 Identities=9% Similarity=0.011 Sum_probs=33.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH-HHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL-GVQVYQVTRQ 184 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L-a~q~~~~~~~ 184 (337)
|.-+++.|++|+|||...+..+.+........+.+.+++++.-...+ ..++...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999987665555433211111225578888754332 3444444443
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.46 E-value=0.073 Score=44.18 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
.|.-+++.||+|+|||......+..... .+.+++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~------~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR------DGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH------HTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH------CCCeEEEEE
Confidence 4567889999999999765443323221 134566665
No 141
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.29 E-value=0.044 Score=47.73 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++.++++||+|+|||+.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5689999999999998653
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.22 E-value=0.13 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++||+|+|||...-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999986533
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.13 E-value=0.11 Score=48.34 Aligned_cols=39 Identities=21% Similarity=0.032 Sum_probs=26.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||...+..+.+.... .+.+++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-----~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-----TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-----SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEEC
Confidence 34568899999999998766555544421 1335777764
No 144
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.10 E-value=0.025 Score=52.73 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
..++++||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998653
No 145
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.08 E-value=0.33 Score=38.00 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=54.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|+|. .+.. .+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR--GIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT--TCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCchhc
Confidence 457999999999999988888764 57888999987665544332 35578999993 2322 778888
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
++++|.-..
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 999887443
No 146
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.06 E-value=0.15 Score=45.69 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
.....+|||||+|.+.... ...+..++...+.... ++++++
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~-~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVK-FLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEE-EEEEES
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceE-EEEEeC
Confidence 4457899999999875433 2344444444333333 444444
No 147
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.028 Score=51.32 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=31.8
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+.+=-....+.|... -+..|..++...+ ...+.++++||+|+|||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 4688887666666666542 1222222222211 12468999999999999865
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.95 E-value=0.044 Score=59.59 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
++.++++||+|+|||..+...+.+... .+.+++++..-..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEEccccc
Confidence 679999999999999987666655542 36679998866443
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.23 Score=43.60 Aligned_cols=46 Identities=7% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeecCchhH
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~~ 282 (337)
....+++||||||.|..... +.+...++.-+... ++++.++-+..+
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t-~fIl~t~~~~kl 125 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYA-VIVLNTRRWHYL 125 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTE-EEEEEESCGGGS
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCe-EEEEEECChHhC
Confidence 45689999999999864432 33334444333333 444444544333
No 150
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.86 E-value=0.068 Score=49.67 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=30.2
Q ss_pred CCccccCCCCHHHHHHHHhCCC---CCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNY---IYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~---~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
..+|.++.-...+.+.|...-. ..|..++ ......+.++++||+|+|||+.+-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHHH
Confidence 3568888766666666643210 0000000 001224689999999999997653
No 151
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.82 E-value=0.27 Score=45.61 Aligned_cols=38 Identities=21% Similarity=0.036 Sum_probs=25.8
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
|.-+++.|++|+|||...+-.+.+.... .+.+++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-----~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-----EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEC
Confidence 4467899999999997766555554431 1345777764
No 152
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.77 E-value=0.19 Score=44.64 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=25.4
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...+++|+||+|.|.... ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999875433 345555666655555555443
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.74 E-value=0.13 Score=44.92 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=23.8
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
...+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999876433 234444555555555555544
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.73 E-value=0.37 Score=42.04 Aligned_cols=20 Identities=20% Similarity=0.039 Sum_probs=15.3
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.++-+.+.|++|+|||+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34566788999999997653
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.71 E-value=0.16 Score=48.04 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCccEEEEecccccccc--cHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 236 SDIEVLVLDEADRMLDE--HFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~--~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
..-.+|||||+|.|... +....+..++... ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34579999999998653 3334555555443 45577777654
No 156
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.71 E-value=0.36 Score=37.84 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=54.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|||. .+. ..+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCccc
Confidence 567999999999999888887764 47788899987765544332 35679999993 232 2678888
Q ss_pred ccEEEEecc
Q psy3143 238 IEVLVLDEA 246 (337)
Q Consensus 238 ~~~iViDEa 246 (337)
++++|.-..
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 998887443
No 157
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.68 E-value=0.17 Score=45.15 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
|.-+++.|++|+|||...+..+.+..+.....+.+.+++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 346789999999999876655554332211122356788887554
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.56 E-value=0.19 Score=44.36 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=33.6
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcC---------CCCCC-CeeEEEEcCCHHH-HHHHHHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYK---------PRDDQ-NTRVLVLVPTREL-GVQVYQVTRQL 185 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~-~~~~lil~Pt~~L-a~q~~~~~~~l 185 (337)
|.-+++.|++|+|||...+..+.+..+.. ..++. ..+++|+.--..+ ..++...+..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 35688999999999987665555432211 11111 1678888755432 44555554443
No 159
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.55 E-value=0.024 Score=47.86 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=27.1
Q ss_pred CCccEEEEeccccccc-----ccHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 236 SDIEVLVLDEADRMLD-----EHFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 236 ~~~~~iViDEad~l~~-----~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
...+++|+||.-.+++ ......+..+++.+.....+++++.-...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4568999999998775 44555566666555333334555544333
No 160
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.38 E-value=0.35 Score=39.18 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
++++||.++++.-+..+...+... ++.+..++|+......... ......|+|+|. .+.. .+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCccc
Confidence 357999999999999988888764 4788889998776554333 235679999992 3333 678888
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 9988873
No 161
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.33 E-value=0.21 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.|.-++|.|++|+|||...+..+.+... .+.+++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH------CCCeEEEEECCC
Confidence 3557889999999999876555544432 244688877543
No 162
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.31 E-value=0.5 Score=38.85 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=53.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.....+...+ .+..+|+|||. .+. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 568999999999999888887764 47888999998766554333 35578999993 222 3778889
Q ss_pred ccEEEE
Q psy3143 238 IEVLVL 243 (337)
Q Consensus 238 ~~~iVi 243 (337)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 998884
No 163
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.30 E-value=0.13 Score=45.93 Aligned_cols=49 Identities=22% Similarity=0.123 Sum_probs=31.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.|.-+++.|++|+|||...+-.+.+... .+..++|+..- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCC-CCHHHHHHHH
Confidence 4556889999999999876655555443 25567777643 2234444444
No 164
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.29 E-value=0.31 Score=39.96 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=23.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||......+. . .+.+++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~--------~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L--------SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H--------HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H--------cCCcEEEEEC
Confidence 345688999999999987654443 1 2446777653
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.23 E-value=0.22 Score=43.95 Aligned_cols=51 Identities=12% Similarity=-0.164 Sum_probs=32.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|.-++++|++|+|||...+..+.+... .+.+++++..- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 4567899999999999776665555542 13467777643 333444444443
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.22 E-value=0.091 Score=45.95 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
+++++||+|+|||....
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 69999999999997653
No 167
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.19 E-value=0.37 Score=38.21 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=54.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++..+..+...+... +..+..++|+.........+ ....+|+|+|. .+ . ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~-~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-A-RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-C-TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-h-cCCCccc
Confidence 568999999999999888877653 57888999988765554332 35679999993 22 2 3678889
Q ss_pred ccEEEEec
Q psy3143 238 IEVLVLDE 245 (337)
Q Consensus 238 ~~~iViDE 245 (337)
+++||.=.
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99998533
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.19 E-value=0.3 Score=44.30 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=14.9
Q ss_pred CCEEE--EcCCCCchhHHhH
Q psy3143 129 RDICG--CAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv--~a~TGsGKT~~~~ 146 (337)
+.+++ +|++|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46888 9999999998754
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.12 E-value=0.34 Score=45.57 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred cEEEEecccccccc----------cHHHHHHHHHHHcCCCCeEEEEeecCch
Q psy3143 239 EVLVLDEADRMLDE----------HFASQMKEIIRLCSRTRQTMLFSATMTD 280 (337)
Q Consensus 239 ~~iViDEad~l~~~----------~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 280 (337)
.+|+|||+|.+... .....+..++........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 58999999987642 1223344444555556667777777554
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.93 E-value=0.19 Score=44.13 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||...-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.91 E-value=0.29 Score=45.89 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=39.6
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~ 187 (337)
.+....+.|-||||||+...- ++... +..+|||+|+...|.|++..++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAERH--------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456788999999999976433 22221 33489999999999999999998753
No 172
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.034 Score=46.84 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=31.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 184 (337)
.|.-++++|++|+|||...+-.+.+.+.. .+..++|+.-. +-..++...+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-----~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCceeeccc-CCHHHHHHHHHH
Confidence 35678999999999998766555554321 13357776533 223444444443
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.70 E-value=0.25 Score=44.37 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
|.-++|.||+|+|||...+..+..... .+.+++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEeccccc
Confidence 456889999999999866544433321 24568888765433
No 174
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.66 E-value=0.057 Score=41.59 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=18.0
Q ss_pred HHhCCCCEEEEcCCCCchhHHh
Q psy3143 124 VALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+..+.+++++|++|+|||..+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456779999999999999653
No 175
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.62 E-value=2 Score=37.60 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-+++.|++|+|||+....
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 467899999999986543
No 176
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.47 E-value=1.3 Score=34.95 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=54.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|||. .+. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chh--cCcchhh
Confidence 457999999999999988888764 57788899988765543332 35679999994 222 3677888
Q ss_pred ccEEEEec
Q psy3143 238 IEVLVLDE 245 (337)
Q Consensus 238 ~~~iViDE 245 (337)
+++||.=.
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 89888643
No 177
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.44 E-value=0.41 Score=42.84 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=27.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|+-+++.|++|+|||...+..+..... .+.+++++.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC
Confidence 3567889999999999876655554442 24568887644
No 178
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.42 E-value=0.13 Score=51.87 Aligned_cols=19 Identities=26% Similarity=0.164 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
++++++||+|+|||...-.
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 4799999999999986543
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.42 E-value=0.32 Score=41.85 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=20.3
Q ss_pred HhCCCCEEEEcCCCCchhHHhHHHHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFMLPIL 150 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~~~l 150 (337)
+..|.-+++.|++|+|||+.....+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44677889999999999987655444
No 180
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.40 E-value=0.29 Score=43.86 Aligned_cols=43 Identities=16% Similarity=-0.018 Sum_probs=25.0
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
|.-+.+.||+|+|||......+.........++.+++++++.-
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4467899999999998765544332110001111357777764
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.31 E-value=0.068 Score=41.23 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.4
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46679999999999999765
No 182
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.23 E-value=3.3 Score=36.26 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=29.7
Q ss_pred cHHHHHHHhcCCCCCCCCccEEEEeccccccc---ccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 220 PGRLLDHLHNTPSFSLSDIEVLVLDEADRMLD---EHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 220 p~~l~~~l~~~~~~~l~~~~~iViDEad~l~~---~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
...++..+..... .--+|||||+|.+.. ..+...+..+....+ +..+| ++.+
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEES
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcC
Confidence 4455555544211 234899999999764 356666666665542 44444 4444
No 183
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.18 E-value=0.4 Score=39.53 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|.-+.+.||+|+|||+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 455688999999999986544
No 184
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.99 E-value=0.15 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.++-+++.|++|+|||+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355788999999999987544
No 185
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.82 E-value=1.6 Score=40.11 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=25.9
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQ 177 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q 177 (337)
++-+++.|++|+|||+.....+.... . .+.+++++. +.+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~--~----~g~~Vllvd~D~~r~aa~~ 143 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK--G----KGRRPLLVAADTQRPAARE 143 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH--T----TTCCEEEEECCSSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--H----cCCeEEEeeccccCchhHH
Confidence 34567889999999987544332221 1 244566655 55555543
No 186
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.78 E-value=0.22 Score=43.23 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||+.....+..... . .+.+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~----~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT-A----MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH-T----SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-H----cCCeEEEEeC
Confidence 4667889999999999876544433321 1 1335766653
No 187
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.68 E-value=0.44 Score=47.41 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
+++++||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998753
No 188
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.07 E-value=1.8 Score=41.06 Aligned_cols=78 Identities=9% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++|+.-|..++..+..... .++.+..++|+......... .....+|+|||. .+.. .+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc--CCCcc
Confidence 356899999999999999988887532 25788889998876554333 335679999994 3333 78899
Q ss_pred CccEEEEecc
Q psy3143 237 DIEVLVLDEA 246 (337)
Q Consensus 237 ~~~~iViDEa 246 (337)
.+++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 9999886544
No 189
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.91 E-value=1.7 Score=37.76 Aligned_cols=20 Identities=30% Similarity=0.130 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++-+++.|++|+|||+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567889999999986543
No 190
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.66 E-value=0.91 Score=40.56 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=57.4
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..++..++.. +..+..++|+.........+ ....+|+|||. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888764 46788899988765544332 34578999994 332 378899
Q ss_pred CccEEEEecccc
Q psy3143 237 DIEVLVLDEADR 248 (337)
Q Consensus 237 ~~~~iViDEad~ 248 (337)
.+++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999999765553
No 191
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.64 E-value=1.1 Score=40.55 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=54.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++..+..+...+... ++.+..++|+.........+ ....+|+|||. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 4678999999999999988887764 57888999988765543332 35679999994 3333 78899
Q ss_pred CccEEEE
Q psy3143 237 DIEVLVL 243 (337)
Q Consensus 237 ~~~~iVi 243 (337)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998886
No 192
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.068 Score=49.38 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred CCccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 90 NSSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+|.+++-.....+.|... .+..|..++...++ ..+.++++||+|+|||+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 34799998888887777542 22334433332221 2468999999999999865
No 193
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.48 E-value=0.47 Score=38.10 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=45.2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+...+... ++.+..++|+....... ........|+|+|. .+.. .+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhc--CCCcc
Confidence 3567999999999999888887764 57788888876544332 23345678999993 2222 67788
Q ss_pred CccEEEE
Q psy3143 237 DIEVLVL 243 (337)
Q Consensus 237 ~~~~iVi 243 (337)
.+++||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 8998886
No 194
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.41 E-value=1.3 Score=38.71 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=52.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..+...+... ++.+..++|+.....+...+ ....+|+|||. .+ . ..+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~-~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-A-RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-T-CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-h-cCccccc
Confidence 567999999999988887776653 57889999997665544333 35679999993 22 2 2678888
Q ss_pred ccEEEE
Q psy3143 238 IEVLVL 243 (337)
Q Consensus 238 ~~~iVi 243 (337)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
No 195
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.08 E-value=1.6 Score=39.23 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=54.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..++..+... +..+..++|+.........+ ....+|+|||. .+.. .+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS--SCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc--CCCccC
Confidence 568999999999999988888765 46788899988765554333 35678999994 3333 788999
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998853
No 196
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.07 E-value=2.7 Score=40.16 Aligned_cols=78 Identities=9% Similarity=0.165 Sum_probs=58.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-|..++..+..... .++.+..++|+......... .....+|+|||. .+.. .+++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCccc
Confidence 56899999999999999988887532 25778889999876554333 335678999994 3333 788999
Q ss_pred ccEEEEeccc
Q psy3143 238 IEVLVLDEAD 247 (337)
Q Consensus 238 ~~~iViDEad 247 (337)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9999876543
No 197
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=91.02 E-value=0.39 Score=44.43 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=48.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.+|++.-|..++..++.. ++.+..++|.........+.....+|+|||. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM--GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC--CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe--eeccC-ceEE
Confidence 457999999999999998888765 5788889986655555555556789999994 3333 67788 8887
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 198
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.98 E-value=2.4 Score=39.02 Aligned_cols=44 Identities=20% Similarity=0.109 Sum_probs=26.0
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc--CCHHHHHH
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV--PTRELGVQ 177 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~--Pt~~La~q 177 (337)
+.++++|++|+|||+...-.+..... . .+.+++++. |.+..+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~-~----~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLRE-K----HKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-T----SCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-h----cCCeEEEEecCCCCccHHH
Confidence 35678899999999876443333221 1 144566665 55555443
No 199
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.79 E-value=0.43 Score=44.22 Aligned_cols=38 Identities=16% Similarity=-0.098 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP 170 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P 170 (337)
.|.-+++.|++|+|||...+-.+.+.... +.+++|+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc------CCEEEEEEC
Confidence 34568899999999998776666665531 456787763
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.74 E-value=0.44 Score=41.81 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+++++++||+|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986543
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.72 E-value=1.2 Score=44.58 Aligned_cols=19 Identities=37% Similarity=0.291 Sum_probs=16.1
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.++.++++||+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3568999999999999764
No 202
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.54 E-value=0.69 Score=42.60 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=50.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++||.+|++.-+..++..+... +..+..++|+..............+|+|||. .+.. .+++. +.+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcEE
Confidence 457999999999999988888775 5788999988654444455566789999994 3333 56666 5555
No 203
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.53 E-value=4.7 Score=39.25 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=58.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..+...+... ++.+..++|+......... ..+..+|+|||. .+. ..+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccCC
Confidence 568999999999999888887764 4777888888765544433 235679999994 222 3788999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
++++|+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998864
No 204
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.52 E-value=1.5 Score=38.73 Aligned_cols=18 Identities=28% Similarity=0.240 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|.-+.+.||+|+|||+..
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445779999999999864
No 205
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.40 E-value=0.6 Score=46.54 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+.+|++||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.11 E-value=0.49 Score=50.92 Aligned_cols=123 Identities=14% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 207 (337)
|+-+.+.||.|||||+..+..+.+... .+.+|+++.+-.+|.... ++.++ +++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~------~g~~~~~i~~e~~~~~~~---~~~~G----v~~-------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIY---ARKLG----VDI-------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHHH---HHHTT----CCG--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEEecCCCCCHHH---HHHcC----CCH--------------
Confidence 456889999999999987665544432 367899999877775543 44433 221
Q ss_pred HHhcCCCEEEECcHHHHHHHhcC-CCCCCCCccEEEEecccccccc--------------c---HHHHHHHHHHHcCCCC
Q psy3143 208 VLRKCPDIVIATPGRLLDHLHNT-PSFSLSDIEVLVLDEADRMLDE--------------H---FASQMKEIIRLCSRTR 269 (337)
Q Consensus 208 ~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~~~~iViDEad~l~~~--------------~---~~~~~~~i~~~~~~~~ 269 (337)
-++++.-|..--+++.-- ..+.-..+++||||.+-.+... + +...++++...+++..
T Consensus 1484 -----~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~ 1558 (1706)
T 3cmw_A 1484 -----DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1558 (1706)
T ss_dssp -----GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 035666663322222100 0111234789999998876542 1 1222455555555555
Q ss_pred eEEEEeecCchhH
Q psy3143 270 QTMLFSATMTDAV 282 (337)
Q Consensus 270 q~i~~SAT~~~~~ 282 (337)
-+++|...+...+
T Consensus 1559 ~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1559 TLLIFINQIRMKI 1571 (1706)
T ss_dssp CEEEEEECBC---
T ss_pred cEEEEeecccccc
Confidence 5677777766544
No 207
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=90.08 E-value=0.68 Score=48.47 Aligned_cols=58 Identities=24% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCC------CCCCCeeEEEEcCCHHHHHHHHHHHHHHh
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKP------RDDQNTRVLVLVPTRELGVQVYQVTRQLA 186 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~~~~lil~Pt~~La~q~~~~~~~l~ 186 (337)
...+|.|.-|||||.+...-++..++... ......++|+|+=|+..|..+..++....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 34599999999999987776777775321 11235589999999999999888777543
No 208
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.86 E-value=0.33 Score=44.75 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
...+++|.|+||||||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4579999999999999975
No 209
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.60 E-value=1.2 Score=48.64 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVY 179 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~ 179 (337)
.++.++++|++|+|||......+.+.+. .+.+++++.-. ++..++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k------~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTT-SCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEcc-ccHHHHH
Confidence 5678999999999999988777777662 35678888643 3333433
No 210
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.57 E-value=0.52 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCC--CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHH
Q psy3143 115 TPIQAATIPVALLGR--DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQ 177 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q 177 (337)
.+-|..++..++..+ -.++.++-|++||...+.-++.... ..|.++.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~-----~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR-----EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH-----HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH-----hcCeEEEEEcCchHHHHH
Confidence 567888888886544 5678999999999986555544432 247789999999776544
No 211
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.25 E-value=0.65 Score=40.92 Aligned_cols=41 Identities=5% Similarity=-0.130 Sum_probs=29.4
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~L 174 (337)
-+++.||+|+|||...+..+.+.... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchh
Confidence 57899999999998876665555421 125689998876555
No 212
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=89.16 E-value=0.73 Score=45.12 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=50.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.+|++.-+..++..+... ++.+..++|.........+.....+|||||. .+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcEE
Confidence 568999999999999888877754 5788999986444443444456689999993 3333 67777 8876
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 213
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.15 E-value=0.59 Score=44.01 Aligned_cols=50 Identities=12% Similarity=-0.067 Sum_probs=31.2
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT 182 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 182 (337)
.|.-+++.|++|+|||...+..+.+.... .+.+++++.-- .-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-----~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-----MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-----SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-----cCCcEEEEecc-CCHHHHHHHH
Confidence 45568899999999998776666655421 14467777642 2234544444
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.08 E-value=1.1 Score=41.36 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++|++|+|||+...-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987544
No 215
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.97 E-value=1.4 Score=38.89 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+.+.+... +..+..++|+.........+ ....+|+|||. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcc
Confidence 3567999999999999988888765 47788889987765544332 34678999993 2333 56788
Q ss_pred CccEEEEec
Q psy3143 237 DIEVLVLDE 245 (337)
Q Consensus 237 ~~~~iViDE 245 (337)
.++++|.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 889888643
No 216
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.92 E-value=2.5 Score=38.73 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCCcc
Q psy3143 164 RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239 (337)
Q Consensus 164 ~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~ 239 (337)
++||.++|+.-|..+...+... ++.+..++|+.........+ .....|+|||. .+.+ .+++..++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCC
Confidence 4999999999999888887764 57888999998765554333 35679999994 3333 78899999
Q ss_pred EEEE
Q psy3143 240 VLVL 243 (337)
Q Consensus 240 ~iVi 243 (337)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 217
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.89 E-value=4.6 Score=36.30 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=53.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
..++||.++++.-+..+...+... ++.+..++|+.........+ .....|+|+|. .+.. .+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR--GLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS--SCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC--cCCccc
Confidence 458999999999999888887764 46788889988765543332 35678999994 3333 788999
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998863
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.89 E-value=0.83 Score=39.47 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
..++++++||+|+|||...-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999997653
No 219
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.80 E-value=1.7 Score=41.86 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=54.7
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++|+.-+.+++..+... ++.+..++++....... .+.....+|+|+|. .+ . ..+++.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~-~GID~p 334 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-G-MGIDKP 334 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-C-TTCCCS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-h-cCCCcc
Confidence 3568999999999999998888764 57889999998765543 33345679999993 22 2 267888
Q ss_pred CccEEEE
Q psy3143 237 DIEVLVL 243 (337)
Q Consensus 237 ~~~~iVi 243 (337)
++++||.
T Consensus 335 ~V~~VI~ 341 (591)
T 2v1x_A 335 DVRFVIH 341 (591)
T ss_dssp CEEEEEE
T ss_pred cccEEEE
Confidence 9998885
No 220
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.74 E-value=0.54 Score=38.69 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+.-|..++..+..|.-+.+.||+|||||+..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4456778888888888999999999999865
No 221
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.74 E-value=0.5 Score=44.62 Aligned_cols=41 Identities=12% Similarity=-0.058 Sum_probs=26.0
Q ss_pred HHHHHhCCCCCChHHHHHHHHH-HhCCCCEEEEcCCCCchhHHh
Q psy3143 103 LKAIGALNYIYPTPIQAATIPV-ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 103 ~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+..|...|.. ++.+...+.. +..|..++++||||||||+..
T Consensus 236 ~~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3445555532 2333333333 456788999999999999764
No 222
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.64 E-value=0.99 Score=38.62 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=32.0
Q ss_pred CHHHHHHHHhCCCCCChHHHH-HHHHHHhCCC-----CEEEEcCCCCchhHHhH
Q psy3143 99 SRPLLKAIGALNYIYPTPIQA-ATIPVALLGR-----DICGCAATGTGKTAAFM 146 (337)
Q Consensus 99 ~~~l~~~l~~~~~~~p~~~Q~-~~i~~~~~~~-----~~lv~a~TGsGKT~~~~ 146 (337)
...+.+-|+..|+. +++- .++..++.++ .++++||+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34778888888876 4443 3355555554 48999999999998765
No 223
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.64 E-value=1.8 Score=40.89 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=54.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH----HHHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE----SVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+.-+..++..+... ++.+..++|+....... .+.....+|+|||. .+ . ..+++.+
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~-~GiD~p~ 304 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-G-MGINKPN 304 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-C-TTTCCTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-h-CCCCccC
Confidence 557999999999999998888764 57888999998765443 33345689999994 22 2 2678889
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.=
T Consensus 305 v~~VI~~ 311 (523)
T 1oyw_A 305 VRFVVHF 311 (523)
T ss_dssp CCEEEES
T ss_pred ccEEEEE
Confidence 9988863
No 224
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.42 E-value=0.61 Score=43.90 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 117 IQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 117 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.-..++-.+..+.+++++||+|+|||..+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33455556678899999999999999754
No 225
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.42 E-value=1.9 Score=38.72 Aligned_cols=72 Identities=7% Similarity=0.101 Sum_probs=53.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++.-+..++..+... +..+..++|+.........+ .....|+|||. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 458999999999999988888765 46788889988765543332 35578999993 222 2678889
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9988863
No 226
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.34 E-value=0.5 Score=42.85 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=28.0
Q ss_pred CccEEEEeccccccc---ccHHHHHHHHHHHcCC-CCeEEEEeecCc
Q psy3143 237 DIEVLVLDEADRMLD---EHFASQMKEIIRLCSR-TRQTMLFSATMT 279 (337)
Q Consensus 237 ~~~~iViDEad~l~~---~~~~~~~~~i~~~~~~-~~q~i~~SAT~~ 279 (337)
.-.++|+||||.++. ..+...+..+++..++ ..-+++.|-++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 356899999999985 3356666666665543 445555565544
No 227
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.27 E-value=1.8 Score=38.62 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+...+... ++.+..++|+......... ......|+|||. .+. ..+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS--SCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888764 4778888998765544333 234679999993 222 377899
Q ss_pred CccEEEEeccc
Q psy3143 237 DIEVLVLDEAD 247 (337)
Q Consensus 237 ~~~~iViDEad 247 (337)
.+++||.-...
T Consensus 318 ~~~~Vi~~~~p 328 (391)
T 1xti_A 318 RVNIAFNYDMP 328 (391)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99999875443
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.13 E-value=0.37 Score=40.98 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.9
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..+..++++|++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35679999999999999754
No 229
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.07 E-value=14 Score=35.83 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=57.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH----HhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV----LRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++|+..+..+...+... ++.+..++|+......... ..+..+|+|||. .+. ..+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCC
Confidence 568999999999999888877764 4677888888765544433 234579999993 222 3788999
Q ss_pred ccEEEEeccccc
Q psy3143 238 IEVLVLDEADRM 249 (337)
Q Consensus 238 ~~~iViDEad~l 249 (337)
++++|+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888754
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.89 E-value=0.31 Score=38.94 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-++++||+|+|||+..-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778899999999998653
No 231
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.77 E-value=0.71 Score=41.31 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
..++++++||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999865
No 232
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.71 E-value=0.15 Score=44.60 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=30.4
Q ss_pred CccccCCCCHHHHHHHHhCC---CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALN---YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.+++-...+.+.|...- ...|..+... .+..++.++++||+|+|||+..-
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHHH
Confidence 46888876676666664320 0001000000 01245689999999999998653
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.60 E-value=0.65 Score=41.64 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.+..++++||||||||+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4557889999999999764
No 234
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=87.27 E-value=4.8 Score=37.53 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=51.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
++..+|++.+..-+..+.+.+... +.++..++|+........ ......+|+|||+..+.. .+++..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------cccccc
Confidence 344555555566666555555543 247888899887554432 234567999999766554 678999
Q ss_pred ccEEEEeccc
Q psy3143 238 IEVLVLDEAD 247 (337)
Q Consensus 238 ~~~iViDEad 247 (337)
+++||+..+.
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999998877
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.21 E-value=0.73 Score=38.88 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=29.1
Q ss_pred CccccCCCCHHHHHHHHhCC--CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGALN--YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~--~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.++.-...+.+.+...- +..|..++.. .....+.++++||+|+|||...-
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHHH
Confidence 56888777776666654310 0011100000 01124579999999999997653
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.20 E-value=0.27 Score=38.86 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
++-++++|++|||||+..-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.11 E-value=0.38 Score=39.10 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-+.+.||+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998753
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.09 E-value=0.28 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
...+..++++++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334556889999999999999764
No 239
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.99 E-value=0.78 Score=49.42 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTR 172 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~ 172 (337)
.|+.++++|++|+|||...+..+.+.+. .+.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh------CCCceEEEEecC
Confidence 3678999999999999887776666653 245688887554
No 240
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=86.99 E-value=1.3 Score=41.00 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=50.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
++++||.+|++.-|..++..+... ++.+..+++...............+|+|||. .+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEE
Confidence 457999999999999888887654 5778888887765444444456689999993 3333 677777 666
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
No 241
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.97 E-value=0.38 Score=44.39 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=30.9
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
-+|.+.+--....+.|... .+..|..++...+ .-.+.+|++||+|+|||+.+-
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHH
Confidence 3588877666666665432 1112222221111 124689999999999998753
No 242
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.92 E-value=0.31 Score=39.37 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
|.++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57899999999999864
No 243
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=86.91 E-value=1.5 Score=43.58 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHh-------hccCcEEEEEeCCccHHHHHHHHhc---------CCCEEEECcHHHHH
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLA-------QFTSVEVALSVGGLEVKVQESVLRK---------CPDIVIATPGRLLD 225 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~-------~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~Ilv~Tp~~l~~ 225 (337)
++++||.+|++.-+..+...+.... ...++.+..++|+.....+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5689999999999999988887532 2247889999999987776655432 357999994
Q ss_pred HHhcCCCCCCCCccEEEE
Q psy3143 226 HLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 226 ~l~~~~~~~l~~~~~iVi 243 (337)
.+.. .+++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 3333 678888887774
No 244
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.83 E-value=0.22 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.0
Q ss_pred hCCCCEEEEcCCCCchhHHhHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
..++.++++|++|||||...-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3567899999999999987543
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.74 E-value=0.26 Score=40.19 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHhH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
+..|+-++++||+|||||+..-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 3467789999999999998653
No 246
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=0.23 Score=46.09 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=32.5
Q ss_pred CccccCCCCHHHHHHHHhCC---CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALN---YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+.+--..+.+.|...= +..|-.++... +.-.+.+|++||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 46888887777777775421 12222222111 123468999999999999765
No 247
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.67 E-value=1.6 Score=45.56 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHH----HHhcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES----VLRKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+++++|++|++.-+..+...+.... .+..+..++|+........ +..+..+|+|||. .+.. .+++.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~--GiDip 881 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET--GIDIP 881 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGG--GSCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccee--eeccc
Confidence 35689999999999999888888753 3578889999987655433 3345689999994 3333 78899
Q ss_pred CccEEEEecccc
Q psy3143 237 DIEVLVLDEADR 248 (337)
Q Consensus 237 ~~~~iViDEad~ 248 (337)
++++||+..++.
T Consensus 882 ~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 882 TANTIIIERADH 893 (1151)
T ss_dssp TEEEEEETTTTS
T ss_pred CCcEEEEeCCCC
Confidence 999999887765
No 248
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.63 E-value=0.19 Score=46.24 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=31.0
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
-+|.+.+--..+.+.|... .+..|-.++...+ ...+.++++||+|+|||+.+-
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHH
Confidence 4688887666666665431 1112222221111 124679999999999998653
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.47 E-value=0.43 Score=38.70 Aligned_cols=21 Identities=24% Similarity=0.004 Sum_probs=17.6
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.++.++++|++|||||+..-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567899999999999987543
No 250
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.35 E-value=0.48 Score=42.59 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHh
Q psy3143 125 ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+..|..++++||||||||+..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 457889999999999999854
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.29 E-value=0.33 Score=38.64 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++|++|||||+..-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999987644
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.14 E-value=0.45 Score=38.94 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-++++||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45678899999999998653
No 253
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.10 E-value=0.33 Score=37.95 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++|++|||||+..-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999987543
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.01 E-value=16 Score=34.18 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=24.1
Q ss_pred CEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcC--CHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVP--TRELG 175 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~P--t~~La 175 (337)
.++++|++|+|||+...-.+.... . .+.+++++.. .|..+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~-~-----~G~kVllVd~D~~r~aa 144 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ-R-----KGWKTCLICADTFRAGA 144 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-H-----TTCCEEEEEECCSSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-h-----CCCeEEEEeccccchhH
Confidence 577899999999987644333222 1 1445666653 34444
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.83 E-value=0.42 Score=37.50 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
+..+++.|++|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999865
No 256
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.67 E-value=0.52 Score=38.49 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=16.3
Q ss_pred CEEEEcCCCCchhHHhHHHHHH
Q psy3143 130 DICGCAATGTGKTAAFMLPILE 151 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~~~l~ 151 (337)
-.+++|++|||||+.....++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3679999999999976443333
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.59 E-value=0.41 Score=40.93 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.8
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|.-+.+.||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667889999999999864
No 258
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.49 E-value=0.51 Score=43.32 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=32.4
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGAL---NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-+|.+++=-....+.|... .+..|..++...+ -..+.+|++||+|+|||+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 4788887666666666432 1223333332221 12468999999999999865
No 259
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.37 E-value=0.44 Score=38.92 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.++-+++.||||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3567899999999998654
No 260
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.37 E-value=0.42 Score=42.48 Aligned_cols=19 Identities=32% Similarity=0.280 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+-++|+||||||||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999987543
No 261
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=85.21 E-value=2.4 Score=40.98 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=50.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.++|+.-|..++..+... +..+..++|...............+|||||. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEE
Confidence 457999999999999988888765 4778888886554444455556789999994 3333 66774 7776
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.14 E-value=0.53 Score=38.40 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.6
Q ss_pred hCCCCEEEEcCCCCchhHHhH
Q psy3143 126 LLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~ 146 (337)
..|+-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367789999999999998653
No 263
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.12 E-value=0.89 Score=37.35 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhCC----CCEEEEcCCCCchhHHhHHHHHHHh
Q psy3143 100 RPLLKAIGALNYIYPTPIQAATIPVALLG----RDICGCAATGTGKTAAFMLPILERL 153 (337)
Q Consensus 100 ~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~l~~l 153 (337)
..+.+-|+-.|+. +... ..++..++.+ +.+++.||+|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3566666655544 3333 4445555544 25899999999999765 3344433
No 264
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.11 E-value=0.41 Score=38.18 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.-++++|++|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678999999999998753
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.11 E-value=0.44 Score=41.91 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+-++|+||||||||....-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3577899999999987543
No 266
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.70 E-value=4.5 Score=36.86 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=51.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeC--------CccHHHH----HHHHhcCCCEEEECcHHHHHHHhc
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG--------GLEVKVQ----ESVLRKCPDIVIATPGRLLDHLHN 229 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~--------~~~~~~~----~~~~~~~~~Ilv~Tp~~l~~~l~~ 229 (337)
+.++||.++++..+..+...+... ++.+..++| +.....+ ..+....+.|+|+|. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 668999999999999888888765 577888888 4433222 223335579999993 2323
Q ss_pred CCCCCCCCccEEEEecc
Q psy3143 230 TPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 230 ~~~~~l~~~~~iViDEa 246 (337)
.+++..+++||+-+.
T Consensus 432 --Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 --GLDVPEVDLVVFYEP 446 (494)
T ss_dssp --GGGSTTCCEEEESSC
T ss_pred --CCCchhCCEEEEeCC
Confidence 678888999886543
No 267
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.63 E-value=0.62 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.5
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.+.+++++|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4668999999999999764
No 268
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.59 E-value=0.53 Score=41.29 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++|+||||||||....-
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 477899999999987543
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.52 E-value=0.57 Score=37.90 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.1
Q ss_pred hCCCCEEEEcCCCCchhHHhH
Q psy3143 126 LLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~ 146 (337)
..|.-+++.|++|||||+..-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356778899999999998653
No 270
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=84.88 E-value=0.19 Score=39.78 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=50.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
+.++||.++++..+..+...+... ++.+..++|+.........+ ....+|+|+|. .+.. .+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR--GIDIPD 98 (170)
Confidence 567999999999998888877664 46777788876544433222 34568999993 2222 667778
Q ss_pred ccEEEEec
Q psy3143 238 IEVLVLDE 245 (337)
Q Consensus 238 ~~~iViDE 245 (337)
+++||.-.
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 88877643
No 271
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.43 E-value=5.6 Score=37.21 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.|++|+|||+...
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 46789999999998653
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=84.37 E-value=0.48 Score=37.87 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+..++++|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998753
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.37 E-value=0.55 Score=39.84 Aligned_cols=18 Identities=22% Similarity=0.003 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++||||||||..+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 368999999999987643
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.27 E-value=0.59 Score=37.78 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56678899999999998653
No 275
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.26 E-value=0.53 Score=42.07 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++||+|+|||...-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999987543
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=84.13 E-value=0.46 Score=37.43 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-++++|++|||||+..-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998653
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.12 E-value=0.39 Score=38.45 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.1
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|.-+++.|++|||||+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999864
No 278
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.06 E-value=0.95 Score=41.54 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=19.2
Q ss_pred HHHHHHHHhC--CCCEEEEcCCCCchhHHh
Q psy3143 118 QAATIPVALL--GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 118 Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~ 145 (337)
+..++..++. |.-+++.||||||||+..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3444544443 345789999999999864
No 279
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.86 E-value=0.82 Score=41.69 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=27.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
|.-+.|.||+|+|||......++..+......+.+.+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 45688999999999987654444443211111234568887643
No 280
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.58 E-value=1.5 Score=36.50 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=19.1
Q ss_pred CCC-CEEEEcCCCCchhHHhHHHHHHH
Q psy3143 127 LGR-DICGCAATGTGKTAAFMLPILER 152 (337)
Q Consensus 127 ~~~-~~lv~a~TGsGKT~~~~~~~l~~ 152 (337)
.|+ ++++.++.|+|||...+--+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 344 68899999999999865444433
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.52 E-value=0.76 Score=36.76 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999864
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.47 E-value=0.38 Score=38.33 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|..++++|++|||||+..-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355688999999999987543
No 283
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.35 E-value=0.62 Score=41.29 Aligned_cols=20 Identities=35% Similarity=0.747 Sum_probs=17.3
Q ss_pred HhCCCCEEEEcCCCCchhHH
Q psy3143 125 ALLGRDICGCAATGTGKTAA 144 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~ 144 (337)
+..|..+.+.||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999984
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.32 E-value=0.52 Score=36.81 Aligned_cols=18 Identities=11% Similarity=-0.276 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++|++|||||+..-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 285
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.29 E-value=1.3 Score=39.64 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=27.8
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.|+-+++.|++|+|||...+..+.+... .+.+++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCC
Confidence 4567899999999999887665555442 24468888753
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.21 E-value=0.46 Score=41.26 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+.++++||+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997653
No 287
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.17 E-value=1.7 Score=40.87 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 128 GRDICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
+.+++|.|.||||||.+.-..+...+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999876554444443
No 288
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.65 E-value=0.79 Score=37.97 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.2
Q ss_pred HhCCCCEEEEcCCCCchhHHhH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
+..|+-+++.||+|+|||+..-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4567788999999999998653
No 289
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.47 E-value=1.8 Score=41.29 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCC
Q psy3143 129 RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPT 171 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt 171 (337)
.+++|.|.||||||.+....++..+..... ...+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP--~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTP--SEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCC--cceEEEEeCCC
Confidence 579999999999998866555555533221 23455555554
No 290
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.42 E-value=6.7 Score=36.94 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 206 (337)
.|.-+++.|++|+|||......+-... . .+.+++++++... ..|+...+..+ ++ ....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~--~----~G~~vi~~~~ee~-~~~l~~~~~~~----g~---------~~~~-- 337 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC--A----NKERAILFAYEES-RAQLLRNAYSW----GM---------DFEE-- 337 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH--T----TTCCEEEEESSSC-HHHHHHHHHTT----SC---------CHHH--
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--h----CCCCEEEEEEeCC-HHHHHHHHHHc----CC---------CHHH--
Confidence 455788999999999987654333222 1 1345777776433 23444333221 11 1111
Q ss_pred HHHhcCCCEEE-------ECcHHHHHHHhcCCCCCCCCccEEEEeccccccccc-----HHHHHHHHHHHcCC-CCeEEE
Q psy3143 207 SVLRKCPDIVI-------ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-----FASQMKEIIRLCSR-TRQTML 273 (337)
Q Consensus 207 ~~~~~~~~Ilv-------~Tp~~l~~~l~~~~~~~l~~~~~iViDEad~l~~~~-----~~~~~~~i~~~~~~-~~q~i~ 273 (337)
....+ .+-+ .+.+...+.+.. .....+.+++|+| -=.-++.. ....+..+++.+.. ..-+|+
T Consensus 338 -~~~~g-~~~~~~~~p~~LS~g~~q~~~~a--~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 338 -MERQN-LLKIVCAYPESAGLEDHLQIIKS--EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp -HHHTT-SEEECCCCGGGSCHHHHHHHHHH--HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -HHhCC-CEEEEEeccccCCHHHHHHHHHH--HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 11111 1111 134444443332 1124567899999 44444555 56666666665533 444555
Q ss_pred EeecC
Q psy3143 274 FSATM 278 (337)
Q Consensus 274 ~SAT~ 278 (337)
.|-..
T Consensus 413 vsh~~ 417 (525)
T 1tf7_A 413 TNTSD 417 (525)
T ss_dssp EEECS
T ss_pred EECcc
Confidence 55544
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.39 E-value=0.92 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.7
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|+-+.+.||+|+|||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999864
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.36 E-value=0.53 Score=37.17 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.2
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+.++||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567899999999998764
No 293
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.14 E-value=4.4 Score=37.93 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=47.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeC--------CccHHHHH----HHHh-cCCCEEEECcHHHHHHHh
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG--------GLEVKVQE----SVLR-KCPDIVIATPGRLLDHLH 228 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~--------~~~~~~~~----~~~~-~~~~Ilv~Tp~~l~~~l~ 228 (337)
+.++||.++++..+..+...+........+.+..++| +.....+. .+.. ...+|+|||. .+.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 5689999999999999999998865444455555554 33322222 2223 4579999994 222
Q ss_pred cCCCCCCCCccEEEEec
Q psy3143 229 NTPSFSLSDIEVLVLDE 245 (337)
Q Consensus 229 ~~~~~~l~~~~~iViDE 245 (337)
..+++..+++||.=.
T Consensus 464 --~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 464 --EGIDIAECNLVILYE 478 (555)
T ss_dssp --CCEETTSCSEEEEES
T ss_pred --cCCccccCCEEEEeC
Confidence 367889999988643
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=82.14 E-value=0.66 Score=37.56 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+++.|++|||||+..-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999998753
No 295
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.92 E-value=0.77 Score=40.51 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++||||||||.....
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3588999999999987543
No 296
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.77 E-value=3.4 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
..+++++||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4589999999999997653
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.67 E-value=0.69 Score=41.76 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.6
Q ss_pred hCCCCEEEEcCCCCchhHHh
Q psy3143 126 LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~ 145 (337)
..|..++++||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999864
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.60 E-value=0.59 Score=36.80 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
|..++++|++|||||+..-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999987533
No 299
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.55 E-value=0.71 Score=36.92 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=17.6
Q ss_pred hCCCCEEEEcCCCCchhHHhHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
..+.-++++|++|||||+..-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3556789999999999987543
No 300
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.28 E-value=4.1 Score=35.25 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=49.0
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~ 236 (337)
.+.++||.++++.-+..+.+.+. .+..++|+.........+ ....+|+|||. .+.. .+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASR--GLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHT--TCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cccc--CCCcc
Confidence 35679999999998877665444 456677877655543332 35679999994 3433 78889
Q ss_pred CccEEEEec
Q psy3143 237 DIEVLVLDE 245 (337)
Q Consensus 237 ~~~~iViDE 245 (337)
.++++|.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 999988643
No 301
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.10 E-value=0.84 Score=42.37 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
++.++++||+|+|||..+-.
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 36899999999999987643
No 302
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.72 E-value=0.41 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998753
No 303
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.70 E-value=0.81 Score=39.67 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
..++++||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999998753
No 304
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.70 E-value=0.91 Score=40.35 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++|+||||||||.....
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999987543
No 305
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.65 E-value=0.64 Score=37.08 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.-++++|++|||||+..-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34588999999999987543
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.63 E-value=0.74 Score=37.23 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+-++++|++|||||+..-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999987543
No 307
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=80.61 E-value=2.8 Score=40.85 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=62.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHH--hhccCcEEEEEeCC--------ccHHHHHHHH----hcCCCEEEECcHHHHHHH
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQL--AQFTSVEVALSVGG--------LEVKVQESVL----RKCPDIVIATPGRLLDHL 227 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l--~~~~~~~v~~~~~~--------~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l 227 (337)
+.++||.++++..+..+...+... ....++.+..++|+ .....+...+ ....+|||||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999998888764 22236788888888 5555443332 34578999993 22
Q ss_pred hcCCCCCCCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEeec
Q psy3143 228 HNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277 (337)
Q Consensus 228 ~~~~~~~l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 277 (337)
. ..+++..+++||.=.. ..+....++++-+.-.....+++++..
T Consensus 475 -~-~GIDip~v~~VI~~d~----p~s~~~~~Qr~GRArr~g~~~~l~~~~ 518 (699)
T 4gl2_A 475 -E-EGLDIKECNIVIRYGL----VTNEIAMVQARGRARADESTYVLVAHS 518 (699)
T ss_dssp -C-TTSCCCSCCCCEEESC----CCCHHHHHHHHTTSCSSSCEEEEEEES
T ss_pred -c-cCCccccCCEEEEeCC----CCCHHHHHHHcCCCCCCCceEEEEEeC
Confidence 2 3778889998884222 233344444444432334455566553
No 308
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=80.59 E-value=0.79 Score=36.75 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.6
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.-++++|++|||||+..-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999998753
No 309
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.44 E-value=1.3 Score=37.57 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.0
Q ss_pred HhCCCCEEEEcCCCCchhHHhHH
Q psy3143 125 ALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.|+.+++.|++|||||+..-+
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 34589999999999999987543
No 310
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.35 E-value=3.9 Score=46.89 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHH---HHhCCCCEEEEcCCCCchhHHhHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATIP---VALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i~---~~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
|...+.+.+.++|+..--.+-.+++. .+...+.+++.||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 44556667778888655455555553 344567899999999999998753
No 311
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.34 E-value=0.63 Score=37.57 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.-++++|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999998753
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.26 E-value=0.67 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.042 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.-++++|++|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44688999999999987543
No 313
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.01 E-value=1.5 Score=45.83 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=28.5
Q ss_pred EEEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHH
Q psy3143 132 CGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173 (337)
Q Consensus 132 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 173 (337)
+|.|..|||||.+.+-=+.+.+... ..+.++|+|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~---~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA---PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC---TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC---CCCCcEEEEecCcc
Confidence 6889999999998766555555432 23568999999863
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.97 E-value=0.76 Score=39.79 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.-++++|++|||||+..-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998754
No 315
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.85 E-value=1 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.++++||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 316
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.37 E-value=0.73 Score=37.36 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=16.8
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.-+++.|+.|||||+..-.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 355688999999999987543
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.35 E-value=0.85 Score=37.72 Aligned_cols=19 Identities=21% Similarity=0.058 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+..++++|++|||||+..-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999998753
No 318
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.12 E-value=1.3 Score=36.11 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=16.8
Q ss_pred HHhCCCCEEEEcCCCCchhHHh
Q psy3143 124 VALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+..|.-+.+.||+|||||+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4557788889999999999865
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.06 E-value=0.91 Score=36.23 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.-+++.||+|+|||+..-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3467899999999986533
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.91 E-value=1 Score=35.44 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.2
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.++++|++|||||+..-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 689999999999987533
No 321
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.67 E-value=1.2 Score=37.53 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=28.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|.++.-.......+...-.. . -...++..+. -.+.+++.||+|+|||...
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 4677776666665555432110 0 0011222211 1245999999999999764
No 322
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.62 E-value=0.64 Score=41.12 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
..+++++||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999765
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.56 E-value=1.1 Score=35.42 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
..++++|++|||||+..-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998753
No 324
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.55 E-value=1.1 Score=40.88 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++|+||||||||.....
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367899999999977543
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.51 E-value=0.9 Score=36.09 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++|++|||||+..-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987543
No 326
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=78.51 E-value=3.9 Score=41.67 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=41.9
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEE--------EeCCccHHHHH----HHHh-cCCCEEEECcHHHHHHH
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL--------SVGGLEVKVQE----SVLR-KCPDIVIATPGRLLDHL 227 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~--------~~~~~~~~~~~----~~~~-~~~~Ilv~Tp~~l~~~l 227 (337)
.+.++||.++++..+..+...+.......++++.. ++|+.....+. .+.. +..+|||||. .+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch
Confidence 46789999999999999999988753222333333 34444433322 2223 4578999993 22
Q ss_pred hcCCCCCCCCccEEEEecc
Q psy3143 228 HNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 228 ~~~~~~~l~~~~~iViDEa 246 (337)
.. .+++..+++||.=++
T Consensus 705 ~e--GIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 DE--GIDIVQCNLVVLYEY 721 (936)
T ss_dssp -------CCCCSEEEEESC
T ss_pred hc--CCcchhCCEEEEeCC
Confidence 22 677888888886444
No 327
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.47 E-value=1 Score=34.78 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999874
No 328
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=78.43 E-value=5.4 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=18.6
Q ss_pred EEcCCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEc
Q psy3143 133 GCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169 (337)
Q Consensus 133 v~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~ 169 (337)
..+..|+|||+...-.+..... .+.+++++=
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~------~g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSR------SGYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHH------TTCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHH------CCCeEEEEE
Confidence 3467889999876543333321 245677764
No 329
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.39 E-value=1.1 Score=36.67 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 115 TPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 115 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
++.+... ..+..|.-++++|++|||||+..-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3444444 234456778899999999998653
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.32 E-value=0.97 Score=36.91 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987644
No 331
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=78.28 E-value=1.6 Score=40.39 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=46.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.+|++.-|..+...+... ++.+..+++...............+|+|||. .+.. .+++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~~--GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC-----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHHh--CeecCC-CEE
Confidence 457999999999999988888765 5778888876433222333345579999993 2222 667777 666
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 332
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.27 E-value=1.3 Score=39.16 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
..+++.||+|+|||...-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999987543
No 333
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=78.26 E-value=7.6 Score=38.05 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=53.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhc--------------------------------cCcEEEEEeCCccHHHHHHHH
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQF--------------------------------TSVEVALSVGGLEVKVQESVL 209 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~--------------------------------~~~~v~~~~~~~~~~~~~~~~ 209 (337)
++++||.+|++.-+..+...+...... ....+..++|+.....+....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999988888764321 123488899998776654433
Q ss_pred ----hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEe
Q psy3143 210 ----RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244 (337)
Q Consensus 210 ----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViD 244 (337)
.+...|+|||. .+.. .+++..+.+||-+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~--Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAA--GVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGG--SSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HHhc--ccCCCceEEEEeC
Confidence 35679999993 3333 6788888876643
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=78.12 E-value=0.71 Score=37.31 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
..++++|++|||||+..-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987543
No 335
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.06 E-value=1 Score=35.16 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+++++.|+.|||||++.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999987643
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.65 E-value=1.1 Score=36.72 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+..+++.|++|||||+..-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999987543
No 337
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.60 E-value=1.2 Score=35.91 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.2
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+.+.|++|||||+..-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999998753
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.56 E-value=1.2 Score=36.64 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
...+++.|++|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999987643
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=77.54 E-value=1.2 Score=34.78 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
+.++++|++|||||...-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999987543
No 340
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=77.54 E-value=2.8 Score=36.54 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.-+.+.||+|+|||+...
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567789999999998643
No 341
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.50 E-value=1 Score=38.65 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=25.8
Q ss_pred CccccCCCCHHHHHHHHhCCCCCChHHH-HHHHHHH--hCCCCEEEEcCCCCchhHHh
Q psy3143 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQ-AATIPVA--LLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~~~~~p~~~Q-~~~i~~~--~~~~~~lv~a~TGsGKT~~~ 145 (337)
.+|.+++-...+.+.|...-. .++. ..++..+ .-.+.+++.||+|+|||+..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 467777766666666543211 1111 1122211 11245999999999999764
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.38 E-value=1.1 Score=36.67 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987643
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.20 E-value=1.1 Score=35.69 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-++++|++|||||+..-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987543
No 344
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=77.20 E-value=1.1 Score=37.08 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=12.4
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+.+.||+|||||+..-
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCCEEEEECSCC----CHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999998753
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.20 E-value=1.4 Score=36.55 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=16.9
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+..+++.|++|||||+..-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345789999999999987543
No 346
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.82 E-value=3.9 Score=38.39 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=36.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEE--------eCCccHHHHH----HHHh-cCCCEEEECcHHHHHHHh
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS--------VGGLEVKVQE----SVLR-KCPDIVIATPGRLLDHLH 228 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~--------~~~~~~~~~~----~~~~-~~~~Ilv~Tp~~l~~~l~ 228 (337)
+.++||.++++..+..+...+.......++++..+ +|+.....+. .+.. ...+|+|||. .+.
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 464 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 464 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh
Confidence 56899999999999999888876532223333333 3334332222 2223 4578999994 222
Q ss_pred cCCCCCCCCccEEEEecc
Q psy3143 229 NTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 229 ~~~~~~l~~~~~iViDEa 246 (337)
. .+++..+++||.=..
T Consensus 465 ~--GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 465 E--GIDIVQCNLVVLYEY 480 (556)
T ss_dssp ----------CEEEEETC
T ss_pred c--CCCchhCCEEEEeCC
Confidence 2 678999999986443
No 347
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.79 E-value=1.1 Score=40.35 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=14.0
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-++++||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999876
No 348
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=76.63 E-value=1.9 Score=38.83 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=45.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
..++||.++++.-+..+.+.+... ++.+..++|+.....+...+ ....+|+|+|. .+ . ..+++..
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~-~Gidip~ 348 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LL-A-RGIDVQQ 348 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SC-C---CCGGG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-c-cCCCccC
Confidence 457999999999998888777653 47788888887665544333 24568999994 22 2 2677888
Q ss_pred ccEEEEe
Q psy3143 238 IEVLVLD 244 (337)
Q Consensus 238 ~~~iViD 244 (337)
+++||.-
T Consensus 349 v~~Vi~~ 355 (414)
T 3eiq_A 349 VSLVINY 355 (414)
T ss_dssp CSCEEES
T ss_pred CCEEEEe
Confidence 8888753
No 349
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.62 E-value=3 Score=47.16 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHH---HHHhCCCCEEEEcCCCCchhHHhHH
Q psy3143 98 LSRPLLKAIGALNYIYPTPIQAATI---PVALLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 98 l~~~l~~~l~~~~~~~p~~~Q~~~i---~~~~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
+...+.+.+...++..-..+-.+++ ..+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 3445566667777764333333333 3445678899999999999998743
No 350
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=76.61 E-value=4 Score=40.67 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=39.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcE--------EEEEeCCccHHHHH----HHHh-cCCCEEEECcHHHHHHHh
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVE--------VALSVGGLEVKVQE----SVLR-KCPDIVIATPGRLLDHLH 228 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~--------v~~~~~~~~~~~~~----~~~~-~~~~Ilv~Tp~~l~~~l~ 228 (337)
+.++||.++++..+..+...+.......+++ ....+|+.....+. .+.. +.++|+|||. .+.
T Consensus 631 ~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~ 705 (797)
T 4a2q_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 705 (797)
T ss_dssp SCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chh
Confidence 5789999999999999999887643222233 23333444333322 2223 4578999993 222
Q ss_pred cCCCCCCCCccEEEEecc
Q psy3143 229 NTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 229 ~~~~~~l~~~~~iViDEa 246 (337)
..+++..+++||.=..
T Consensus 706 --~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 706 --EGIDIVQCNLVVLYEY 721 (797)
T ss_dssp -------CCCSEEEEESC
T ss_pred --cCCCchhCCEEEEeCC
Confidence 2678999999987444
No 351
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=76.30 E-value=1.8 Score=38.71 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=19.1
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4456678875 567899999999764
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.18 E-value=1.2 Score=35.88 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-++++|++|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999875
No 353
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.15 E-value=3.6 Score=37.18 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=50.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE-EEeCCccHHHHHHHHhcCCCEEEE----CcHHHHHHHhcCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA-LSVGGLEVKVQESVLRKCPDIVIA----TPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~Ilv~----Tp~~l~~~l~~~~~~~l~ 236 (337)
+.++||.++++.-|..+...+... ++.+. .++|. ... ...+..+..+|+|| |. .+ . ..+++.
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~-~r~-~~~f~~g~~~vLvat~s~T~-----~~-~-~GiDip 318 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EKN-FEDFKVGKINILIGVQAYYG-----KL-T-RGVDLP 318 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH-HHH-HHHHHTTSCSEEEEECCTTC-----CC-C-CCCCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc-chH-HHHHhCCCCeEEEEecCcCc-----hh-h-ccCccc
Confidence 367999999999999988888764 46666 55554 222 44444566899999 73 22 2 377899
Q ss_pred C-ccEEEEecc
Q psy3143 237 D-IEVLVLDEA 246 (337)
Q Consensus 237 ~-~~~iViDEa 246 (337)
. +++||.-..
T Consensus 319 ~~v~~VI~~~~ 329 (414)
T 3oiy_A 319 ERIKYVIFWGT 329 (414)
T ss_dssp TTCCEEEEESC
T ss_pred cccCEEEEECC
Confidence 8 999885443
No 354
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.12 E-value=2 Score=37.92 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=18.9
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445677875 667899999999764
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.09 E-value=1.1 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+++.|++|||||+..-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998653
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=76.00 E-value=1 Score=35.48 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=12.4
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.-++++|++|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999987643
No 357
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.89 E-value=1.1 Score=35.57 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.-++++|++|||||+..-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999987543
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.88 E-value=1.3 Score=35.94 Aligned_cols=21 Identities=24% Similarity=0.157 Sum_probs=17.1
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.-++++|+.|||||+..-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 456789999999999987543
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.87 E-value=1.2 Score=36.11 Aligned_cols=21 Identities=19% Similarity=0.029 Sum_probs=17.3
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.-++++|+.|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466789999999999987643
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.62 E-value=1.2 Score=37.71 Aligned_cols=19 Identities=21% Similarity=0.015 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
.-++++|++|||||+..-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4588999999999987543
No 361
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=75.54 E-value=6.1 Score=36.39 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999865
No 362
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=75.53 E-value=1.7 Score=34.56 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
.+.+.||+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999864
No 363
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.51 E-value=1.8 Score=40.30 Aligned_cols=20 Identities=25% Similarity=0.097 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
..+++++||+|+|||...-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 34899999999999987643
No 364
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.38 E-value=1.3 Score=34.32 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987533
No 365
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.26 E-value=1.6 Score=37.25 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCChHHHHHHHHHHh--CCCCEEEEcCCCCchhHHh
Q psy3143 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL--LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 90 ~~~f~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~ 145 (337)
..+|.++.-.......+...-.. . -...++..+- -.+.+++.||+|+|||...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 35688887777776666542110 0 0011222211 1245999999999999764
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.10 E-value=1.8 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-.++.|++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5679999999999864
No 367
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.07 E-value=2 Score=39.15 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4556678886 567899999999875
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.00 E-value=1.4 Score=35.43 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|||||+..-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 368999999999987543
No 369
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.87 E-value=3.1 Score=36.58 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
+-+.+.|++|+|||+...
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346788999999998654
No 370
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.86 E-value=2.2 Score=38.87 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.1
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345567875 667899999999764
No 371
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.61 E-value=1.4 Score=42.49 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999753
No 372
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.58 E-value=1.3 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
.+.+.|++|||||+..-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47799999999998653
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.53 E-value=1.4 Score=34.95 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=14.2
Q ss_pred EEEEcCCCCchhHHhHH
Q psy3143 131 ICGCAATGTGKTAAFML 147 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~ 147 (337)
++++|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67999999999987533
No 374
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=74.52 E-value=11 Score=36.75 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=52.6
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHH---HHHHHh---cCCCEEEECcHHHHHHHhcCCCCCCCCc
Q psy3143 165 VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV---QESVLR---KCPDIVIATPGRLLDHLHNTPSFSLSDI 238 (337)
Q Consensus 165 ~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~---~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~ 238 (337)
.+|+++|+.-+..+...+... +..+..++|+..... ....++ +..+|+|||. .+.. .+++ .+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~--GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM--GLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS--SCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC--CcCc-Cc
Confidence 466688998888887777763 578899999987663 333344 4479999994 3333 6788 89
Q ss_pred cEEEEeccccc
Q psy3143 239 EVLVLDEADRM 249 (337)
Q Consensus 239 ~~iViDEad~l 249 (337)
++||.-.+.+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998877653
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.47 E-value=1.9 Score=35.31 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.4
Q ss_pred EEEEcCCCCchhHHhHH
Q psy3143 131 ICGCAATGTGKTAAFML 147 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~ 147 (337)
+++.||+||||++..-.
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999987644
No 376
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.46 E-value=2.3 Score=38.18 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=18.4
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345667875 567899999999874
No 377
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.37 E-value=1.7 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|.-+.|.||+|||||+..
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446779999999999754
No 378
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.35 E-value=2 Score=38.24 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567775 567899999999864
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=74.19 E-value=1.5 Score=35.51 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.|++|||||+..-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998753
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=74.15 E-value=2.3 Score=34.27 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=27.0
Q ss_pred CCCccEEEEeccccc--ccccHHHHHHHHHHHcCCCCeEEEEeecC
Q psy3143 235 LSDIEVLVLDEADRM--LDEHFASQMKEIIRLCSRTRQTMLFSATM 278 (337)
Q Consensus 235 l~~~~~iViDEad~l--~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 278 (337)
....+++|+||+..| .+..|...+..++.. ...+|+-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 466789999998877 445576777766653 22345446665
No 381
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=74.14 E-value=2.4 Score=37.84 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=18.3
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345667875 567899999999864
No 382
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=73.98 E-value=2.4 Score=37.45 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=19.6
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556778886 567899999999764
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=73.92 E-value=2 Score=35.96 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+..+++.|++|||||+..-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 44689999999999987644
No 384
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.90 E-value=1.9 Score=35.32 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCchhHHhHH
Q psy3143 129 RDICGCAATGTGKTAAFML 147 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~~ 147 (337)
..+.+.|++|||||+..-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999987543
No 385
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=73.85 E-value=9.2 Score=37.51 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=52.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhc-----------------------------cCcEEEEEeCCccHHHHHHHH---
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQF-----------------------------TSVEVALSVGGLEVKVQESVL--- 209 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~-----------------------------~~~~v~~~~~~~~~~~~~~~~--- 209 (337)
+.++||.+|++.-+..+...+...... ....+..++++.....+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 567999999999999988888764221 122488889988766654332
Q ss_pred -hcCCCEEEECcHHHHHHHhcCCCCCCCCccEEEEecc
Q psy3143 210 -RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 210 -~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEa 246 (337)
.+..+|+|||. .+.. .+++..+.+| |+..
T Consensus 317 ~~g~~~vlvaT~-----~l~~--Gvdip~~~~V-I~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLSA--GINTPAFRVI-IRDI 346 (720)
T ss_dssp HTTSSCEEEECS-----TTGG--GCCCCBSEEE-ECCS
T ss_pred HCCCCeEEEECc-----Hhhc--cCCCCceEEE-EcCC
Confidence 35579999994 2333 6678887764 4433
No 386
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=73.83 E-value=2.3 Score=38.24 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.3
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345677875 567899999999764
No 387
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=73.82 E-value=1.5 Score=36.76 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.-+++.|++|||||+..-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578899999999998653
No 388
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.80 E-value=2.3 Score=37.96 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345667875 567899999999764
No 389
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.79 E-value=1.5 Score=34.92 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.3
Q ss_pred EEEEcCCCCchhHHhHH
Q psy3143 131 ICGCAATGTGKTAAFML 147 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~~ 147 (337)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999987643
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=73.73 E-value=1.5 Score=35.88 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987543
No 391
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=73.72 E-value=2.3 Score=37.85 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3445677875 567899999999775
No 392
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=73.66 E-value=3.1 Score=40.10 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=19.8
Q ss_pred HHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
-..+..|+.+++.||+|+|||+.+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 344567889999999999999865
No 393
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.66 E-value=1.6 Score=43.51 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=34.4
Q ss_pred cCCccccCCCCHHHHHHHHhCC---CCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHh
Q psy3143 89 ENSSFHQMNLSRPLLKAIGALN---YIYPTPIQAATIPVALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 89 ~~~~f~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 145 (337)
..-+|.+++......+.|...- ...|..++... +...+.+++.||+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 3457888888888888886542 22222221110 112357999999999999764
No 394
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=73.56 E-value=2.1 Score=38.48 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678885 567899999999764
No 395
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=73.54 E-value=2.5 Score=37.61 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=18.4
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 445667875 567899999999764
No 396
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.50 E-value=2.2 Score=38.98 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556778885 567899999999874
No 397
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.49 E-value=2.4 Score=38.00 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=18.8
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445677875 567899999999764
No 398
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=73.48 E-value=3.2 Score=40.43 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=48.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHHhcCCCEEEECcHHHHHHHhcCCCCCCCCccEE
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVL 241 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~i 241 (337)
+.++||.++|+.-+..+++.++.. ++.+..++|+..... ..+...+|+|||. .+.. .+++. +++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----Vaer--GIDId-V~~V 460 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMT--GYTGD-FDSV 460 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHH--HCCCC-BSEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHc--cCCCC-CcEE
Confidence 568999999999999988877753 578889999876543 2345568999994 3333 45564 8877
Q ss_pred E
Q psy3143 242 V 242 (337)
Q Consensus 242 V 242 (337)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 7
No 399
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.47 E-value=2.5 Score=37.96 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.7
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445678875 567899999999764
No 400
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.33 E-value=2.2 Score=38.02 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666778885 567899999999875
No 401
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=73.30 E-value=1.4 Score=39.57 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=0.0
Q ss_pred EEEEcCCCCchhHHh
Q psy3143 131 ICGCAATGTGKTAAF 145 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~ 145 (337)
.+++|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.26 E-value=1.6 Score=35.83 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
+..+++.|++|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34688999999999987543
No 403
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=73.25 E-value=3.2 Score=40.50 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeC--------CccHHHHH----HHHh-cCCCEEEECcHHHHHHH
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG--------GLEVKVQE----SVLR-KCPDIVIATPGRLLDHL 227 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~--------~~~~~~~~----~~~~-~~~~Ilv~Tp~~l~~~l 227 (337)
.+.++||.++++.-+..+...+........+.+..++| +.....+. .+.. +..+|||+|. +
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 35689999999999999999988765433466666654 44333332 2223 4578999993 2
Q ss_pred hcCCCCCCCCccEEEEecc
Q psy3143 228 HNTPSFSLSDIEVLVLDEA 246 (337)
Q Consensus 228 ~~~~~~~l~~~~~iViDEa 246 (337)
.. ..+++..+++||.=..
T Consensus 471 ~~-~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 AD-EGIDIAQCNLVILYEY 488 (696)
T ss_dssp SC-CC---CCCSEEEEESC
T ss_pred hh-cCCcCccCCEEEEeCC
Confidence 22 3778899999886444
No 404
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=73.23 E-value=2.4 Score=37.84 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=18.4
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 445667875 567899999999764
No 405
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=73.23 E-value=2.1 Score=35.35 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+-+++.||+||||++..-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34577899999999987644
No 406
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=73.06 E-value=2.5 Score=37.81 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678886 567899999999774
No 407
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=72.89 E-value=2.5 Score=37.79 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=19.0
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
++..++.|.+ ++..|.||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4455678875 567899999999764
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=72.87 E-value=1.6 Score=35.95 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987543
No 409
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.55 E-value=2.7 Score=38.01 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.4
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345667875 667899999999774
No 410
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=72.51 E-value=4.3 Score=41.62 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCCCCcCCccccCC-C-CHHHHHHHHhCCC----CCChHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhHH
Q psy3143 84 APPVEENSSFHQMN-L-SRPLLKAIGALNY----IYPTPIQAATIPVALL---GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 84 ~~~~~~~~~f~~~~-l-~~~l~~~l~~~~~----~~p~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+-....++|..++ | ++..++....... .+++.+=..|...++. .+.+||+|.+|+|||.+.-+
T Consensus 91 G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~ 163 (1052)
T 4anj_A 91 ANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163 (1052)
T ss_dssp TTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH
Confidence 44455667888885 5 7778877765432 2235566667766653 34899999999999988633
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.48 E-value=3 Score=36.29 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
|.-+.+.||+|+|||+..-
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3456799999999998653
No 412
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.47 E-value=2.1 Score=34.61 Aligned_cols=20 Identities=25% Similarity=0.009 Sum_probs=15.8
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+.-+.+.|++|||||+..-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567899999999998653
No 413
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.47 E-value=1.8 Score=36.15 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=24.6
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcC
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~ 266 (337)
+.+-+++++||--.-++......+..+++.+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45568999999998888777777777766653
No 414
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.31 E-value=1.6 Score=40.83 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=29.1
Q ss_pred CccccCCCCHHHHHHHHhC--CCCCChHHHHHHHHHHhCCCCEEEEcCCCCchhHHhH
Q psy3143 91 SSFHQMNLSRPLLKAIGAL--NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 91 ~~f~~~~l~~~l~~~l~~~--~~~~p~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 146 (337)
.+|.++.-.....+.+... .+..|..++.-. +...+.++++||+|+|||+..-
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH
Confidence 4677776666665555432 011121111100 0123579999999999998653
No 415
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.28 E-value=1.9 Score=34.91 Aligned_cols=18 Identities=28% Similarity=0.099 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|.-+.+.|++|||||+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 345678999999999865
No 416
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=71.80 E-value=2.3 Score=38.43 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.8
Q ss_pred HHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 123 PVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 123 ~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
..++.|.+ ++..|.||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44667875 567899999999764
No 417
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=71.37 E-value=3.7 Score=40.18 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred CCCCCCcCCccccCCC-CHHHHHHHHhCCC--CCC--hHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhH
Q psy3143 83 DAPPVEENSSFHQMNL-SRPLLKAIGALNY--IYP--TPIQAATIPVALL---GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 83 ~~~~~~~~~~f~~~~l-~~~l~~~l~~~~~--~~p--~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~ 146 (337)
..+-....++|..+++ ++..+........ ..| +.+=..|+..++. .+.+||+|.+|+|||.+.=
T Consensus 41 ~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 112 (697)
T 1lkx_A 41 IGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASK 112 (697)
T ss_dssp SSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred eCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHH
Confidence 3455666778888876 4566666644322 223 4555667666653 3479999999999999853
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=71.35 E-value=1.2 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
..++++|++|||||+..-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998653
No 419
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=71.30 E-value=1.9 Score=35.09 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-.+|.||+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678999999999874
No 420
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=71.21 E-value=2.8 Score=37.56 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.5
Q ss_pred CCCC--EEEEcCCCCchhHHh
Q psy3143 127 LGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~--~lv~a~TGsGKT~~~ 145 (337)
.|.+ ++..|.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4765 588999999999764
No 421
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=71.07 E-value=2.6 Score=37.93 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=18.0
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 344567775 567899999999764
No 422
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.01 E-value=2.6 Score=41.75 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
..+++++||+|+|||...-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3489999999999998753
No 423
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=71.00 E-value=2.5 Score=36.91 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=16.2
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|.-+.+.||+|||||+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999764
No 424
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=70.70 E-value=2.4 Score=37.37 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=18.1
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHH
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPIL 150 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l 150 (337)
.++-+++.||+|+|||......+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445679999999999976655443
No 425
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.43 E-value=2.1 Score=38.16 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4555677875 567899999999765
No 426
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.34 E-value=1.9 Score=40.93 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999765
No 427
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=70.14 E-value=2 Score=35.02 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.-+.+.|++|||||+..-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357799999999998653
No 428
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=70.10 E-value=0.91 Score=42.20 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHHH----hcCCCEEEECcHHHHHHHhcCCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL----RKCPDIVIATPGRLLDHLHNTPSFSLSD 237 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 237 (337)
..++||.||++.-|..++..+... +..+..++|+.........+ ....+|+|||. .+.. .+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~--GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cccc--CCcccc
Confidence 467999999999988888877764 46777788876554433222 34568999993 3333 678888
Q ss_pred ccEEE
Q psy3143 238 IEVLV 242 (337)
Q Consensus 238 ~~~iV 242 (337)
+++||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 88887
No 429
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=70.06 E-value=7.5 Score=38.00 Aligned_cols=75 Identities=25% Similarity=0.220 Sum_probs=51.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhc--------------------------cCcEEEEEeCCccHHHHHHHH----hc
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQF--------------------------TSVEVALSVGGLEVKVQESVL----RK 211 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~--------------------------~~~~v~~~~~~~~~~~~~~~~----~~ 211 (337)
++++||.+|++.-+..+...+...... .+..+..++|+.....+.... .+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 567999999999999988887764211 113467788988776554333 35
Q ss_pred CCCEEEECcHHHHHHHhcCCCCCCCCccEEEE
Q psy3143 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243 (337)
Q Consensus 212 ~~~Ilv~Tp~~l~~~l~~~~~~~l~~~~~iVi 243 (337)
...|+|||. .+.. .+++..+.+||-
T Consensus 322 ~~~vlvaT~-----~l~~--Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP-----TLAA--GVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS-----TTTS--SSCCCBSEEEEC
T ss_pred CCeEEEECc-----HHhc--cCCCCceEEEEc
Confidence 679999994 2322 677888877554
No 430
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=69.90 E-value=3.3 Score=38.21 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 122 IPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 122 i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
+..++.|.+ ++..|.||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445577875 567899999999765
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=69.86 E-value=2.3 Score=35.62 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=20.5
Q ss_pred CCccEEEEecccccccccHHHHHHHHH
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEII 262 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~ 262 (337)
.+-+++++||.-.-++......+..++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 345799999999888877666666655
No 432
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=69.81 E-value=2.9 Score=36.65 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=21.5
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
..+.+|++..|.+... ..+..+++.+++...++..|-
T Consensus 151 ~ad~ill~k~dl~de~---~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVAGEA---EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTCSCT---HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccCCHH---HHHHHHHHHhCCCCeEEEecc
Confidence 4578888888866332 455555555555555554443
No 433
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=69.53 E-value=1.9 Score=48.66 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.0
Q ss_pred HhCCCCEEEEcCCCCchhHHh
Q psy3143 125 ALLGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 125 ~~~~~~~lv~a~TGsGKT~~~ 145 (337)
+..++.++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456789999999999999764
No 434
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=69.45 E-value=2.7 Score=33.62 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.|++|||||+..-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47799999999998753
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=69.41 E-value=2.6 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
+.+-+++++||--.-++......+..+++.+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4556788888888877776666666665544
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=69.26 E-value=2.5 Score=33.61 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=17.3
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.|+-++++|+.|+|||...+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 467899999999999976543
No 437
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=68.98 E-value=2.2 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.4
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-++++|++|||||+..-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 438
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.43 E-value=3.1 Score=34.97 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.-+.+.||+|||||+..-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678999999999987533
No 439
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.31 E-value=4.1 Score=36.46 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.||+|+|||+..-
T Consensus 159 vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 46789999999998653
No 440
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=68.03 E-value=3 Score=33.63 Aligned_cols=18 Identities=17% Similarity=-0.062 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchhHHhH
Q psy3143 129 RDICGCAATGTGKTAAFM 146 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~~ 146 (337)
.-+.+.|++|||||+..-
T Consensus 23 ~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346789999999998653
No 441
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=67.98 E-value=2.6 Score=35.01 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHH-HHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEI-IRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i-~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||--.-++......+..+ +..+... .+++++.
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~tvi~vt 187 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVT 187 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTT-SEEEEEC
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCC-CEEEEEc
Confidence 345689999999988887777776664 3333333 3555543
No 442
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=67.66 E-value=2.8 Score=37.74 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=19.0
Q ss_pred HHHHHhCCCC--EEEEcCCCCchhHHh
Q psy3143 121 TIPVALLGRD--ICGCAATGTGKTAAF 145 (337)
Q Consensus 121 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 145 (337)
.+..++.|.+ ++..|.||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4555677875 567899999999764
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.62 E-value=2.6 Score=34.03 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+.++|++|||||++.-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466899999999987644
No 444
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=67.60 E-value=2.4 Score=37.55 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcC-CCCeEEEE
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQTMLF 274 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~-~~~q~i~~ 274 (337)
..-.++++||--.-++......+..++..+. ...++|+.
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~ 310 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 310 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456788888777777666666666555542 23344443
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.43 E-value=2.7 Score=35.71 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=28.0
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+-+++++||.-.-++......+..++..+... .+++++.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~-~tviivt 211 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIA 211 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTT-SEEEEEC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEEc
Confidence 45799999999888887777777777666544 4555543
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.95 E-value=2.8 Score=35.29 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||.-.-++......+..+++.+.. ..+++++.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-g~tviivt 201 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIA 201 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEEC
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEe
Confidence 455689999999998888777777777666543 34555554
No 447
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.95 E-value=2.7 Score=36.08 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
..+-+++|+||--.-++......+..+++.+
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4456899999998888876666666666554
No 448
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=66.68 E-value=1.8 Score=34.26 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.|++|||||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36688999999998653
No 449
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=66.48 E-value=7.9 Score=38.45 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=41.5
Q ss_pred CCCCCcCCccccC-CC-CHHHHHHHHhCCC--CCC--hHHHHHHHHHHhC---CCCEEEEcCCCCchhHHh
Q psy3143 84 APPVEENSSFHQM-NL-SRPLLKAIGALNY--IYP--TPIQAATIPVALL---GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 84 ~~~~~~~~~f~~~-~l-~~~l~~~l~~~~~--~~p--~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~ 145 (337)
.+-....++|..+ ++ ++..++....... ..| +.+=..|+..++. .+.+||+|.+|+|||.+.
T Consensus 87 G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 87 ANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp TTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 4445566778888 44 5667776654432 223 5566667766654 357999999999999875
No 450
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.47 E-value=2.8 Score=34.71 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=28.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+.+-+++++||--.-+|......+..+++.+.....+++++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~v 196 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45668999999998888877777777666553223445544
No 451
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=66.43 E-value=7 Score=30.85 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=31.0
Q ss_pred ccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 238 IEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 238 ~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
-.++|+||...-++......+..+++.+....|+|+.|-
T Consensus 87 ~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 87 APFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 469999999998888777777777777766778777653
No 452
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.30 E-value=2.9 Score=35.38 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=27.7
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
..+-+++++||--.-+|......+..+++.+.....+++++.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 210 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 345689999999888887767777776665533233444443
No 453
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=66.16 E-value=2.5 Score=39.72 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+.++++||+|+|||+..
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999765
No 454
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=66.02 E-value=1.3 Score=35.92 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.7
Q ss_pred EEEEcCCCCchhHHhH
Q psy3143 131 ICGCAATGTGKTAAFM 146 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~~ 146 (337)
+++.|+.|||||+..-
T Consensus 3 I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6789999999998653
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.01 E-value=3 Score=34.90 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+.+-+++++||--.-++......+..+++.+.....+++++
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~v 195 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45668999999999888877777777766553223344444
No 456
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=65.47 E-value=3.1 Score=35.51 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=26.5
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCC-CeEEEEe
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRT-RQTMLFS 275 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~-~q~i~~S 275 (337)
+-+++++||--.-++......+..+++.+... ..+++++
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~v 204 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 56899999998888877667777666655332 2345444
No 457
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=65.42 E-value=21 Score=33.90 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=51.2
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHHhhc----cCcEEEEEeCCccH-H-HHHHHHhc-CCC---EEEECcHHHHHHHhcC
Q psy3143 161 QNTRVLVLVPTRELGVQVYQVTRQLAQF----TSVEVALSVGGLEV-K-VQESVLRK-CPD---IVIATPGRLLDHLHNT 230 (337)
Q Consensus 161 ~~~~~lil~Pt~~La~q~~~~~~~l~~~----~~~~v~~~~~~~~~-~-~~~~~~~~-~~~---Ilv~Tp~~l~~~l~~~ 230 (337)
.++++||.++++.-|..+...+...... .+..+..++|.... . .....++. ..+ |+|||. .+..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~- 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTT- 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTT-
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhc-
Confidence 3578999999999999999998876431 22235566676543 1 11122222 223 777872 2222
Q ss_pred CCCCCCCccEEEEeccc
Q psy3143 231 PSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 231 ~~~~l~~~~~iViDEad 247 (337)
.+++..+++||++..-
T Consensus 512 -GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 -GVDAPTCKNVVLARVV 527 (590)
T ss_dssp -TCCCTTEEEEEEESCC
T ss_pred -CccchheeEEEEEecC
Confidence 7889999999986553
No 458
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.07 E-value=4.1 Score=32.13 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.2
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-+.+.|++|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 459
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=64.95 E-value=2.8 Score=36.01 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-+.++|+.|||||++.-.
T Consensus 77 iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.93 E-value=3.2 Score=35.28 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=27.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
+.+-+++++||--.-+|......+..+++.+.....+++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34568999999998888777777777666553223345444
No 461
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.86 E-value=3.8 Score=35.43 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=13.3
Q ss_pred CEEEEcCCCCchhHHh
Q psy3143 130 DICGCAATGTGKTAAF 145 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~ 145 (337)
-+.|+|++|||||+..
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568999999999865
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=64.84 E-value=3 Score=35.00 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.3
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-+.+.|++|||||+..-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46799999999998754
No 463
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=64.84 E-value=2.7 Score=35.27 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=24.7
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+-+++++||--.-++......+..++..+... .+++++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~tvi~vt 195 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKG-RTTLVIA 195 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTT-SEEEEEC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 34799999999888766555555555544333 4555443
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=64.58 E-value=3.1 Score=33.36 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
-+.+.|++|||||+..-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999987543
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.43 E-value=3.3 Score=34.90 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=26.3
Q ss_pred EEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 240 VLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 240 ~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
++++||--.-+|......+..+++.+.....+++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999988888777777777766532234555543
No 466
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=64.37 E-value=3.9 Score=31.75 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.1
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.|.-+.+.||.|+|||+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556779999999999753
No 467
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.35 E-value=74 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.9
Q ss_pred CEEEEcCCCCchhHHhHH
Q psy3143 130 DICGCAATGTGKTAAFML 147 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~~ 147 (337)
.+.++|++|+|||..+.-
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577899999999987543
No 468
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=64.05 E-value=14 Score=38.30 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=53.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEE-EEeCCccHHHHHHHHhcCCCEEEE----CcHHHHHHHhcCCCCCCC
Q psy3143 162 NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA-LSVGGLEVKVQESVLRKCPDIVIA----TPGRLLDHLHNTPSFSLS 236 (337)
Q Consensus 162 ~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~Ilv~----Tp~~l~~~l~~~~~~~l~ 236 (337)
+.++||.+|++.-|..+...+... ++.+. .++|. ... ...+..+..+|+|| |. .+.+ .+++.
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~-rr~-l~~F~~G~~~VLVatas~Td-----vlar--GIDip 375 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EKN-FEDFKVGKINILIGVQAYYG-----KLTR--GVDLP 375 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH-HHH-HHHHHHTSCSEEEEETTTHH-----HHCC--SCCCT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc-HHH-HHHHHCCCCCEEEEecCCCC-----eeEe--cCcCC
Confidence 367999999999999988888764 46666 66663 223 44455567899999 62 3333 78899
Q ss_pred C-ccEEEEecccc
Q psy3143 237 D-IEVLVLDEADR 248 (337)
Q Consensus 237 ~-~~~iViDEad~ 248 (337)
+ +++||.=.+-.
T Consensus 376 ~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 376 ERIKYVIFWGTPS 388 (1104)
T ss_dssp TTCCEEEEESCCE
T ss_pred CCCCEEEEECCCC
Confidence 9 99999766554
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.05 E-value=3.4 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=29.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||--.-+|......+..+++.+.....+++++.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vt 195 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 456689999999998888777777777666532233454443
No 470
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=63.87 E-value=4.4 Score=32.07 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCchhHHh
Q psy3143 129 RDICGCAATGTGKTAAF 145 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~~ 145 (337)
+-++++|++|||||...
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 34678999999999753
No 471
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=63.83 E-value=3.4 Score=35.27 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCC-CCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR-TRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~-~~q~i~~SA 276 (337)
+.+-+++++||--.-+|......+..++..+.. ...+++++.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 456689999999998998888888888877753 234555543
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.75 E-value=3.5 Score=34.94 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=29.5
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||--.-++......+..+++.+.....+++++.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivt 203 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 456689999999988888777777777665533334555543
No 473
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=63.58 E-value=3.4 Score=34.88 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCC-CeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT-RQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~-~q~i~~SA 276 (337)
+.+-+++++||--.-+|......+..++..+... ..+++++.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456899999999888887777777776665332 33455543
No 474
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.57 E-value=3.3 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHhCCCCEEEEcCCCCchhHH
Q psy3143 124 VALLGRDICGCAATGTGKTAA 144 (337)
Q Consensus 124 ~~~~~~~~lv~a~TGsGKT~~ 144 (337)
.+..++.++++||||+|||..
T Consensus 1300 ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHHH
T ss_pred HHHCCCcEEEECCCCCCHHHH
Confidence 345778999999999999954
No 475
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=63.25 E-value=4.6 Score=33.94 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=28.6
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+-+++++||--.-+|......+..+++.+.....+++++.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 200 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVIT 200 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEEC
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4579999999998888877777777776644334555443
No 476
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=63.13 E-value=3.6 Score=35.00 Aligned_cols=42 Identities=14% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+.+-+++++||--.-+|......+..+++.+.....+++++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vt 216 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 456689999999998888777777777666533344555543
No 477
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=62.99 E-value=3.5 Score=34.45 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchhHHhHH
Q psy3143 128 GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~~ 147 (337)
...+.+.||+|||||+..-.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678999999999987543
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=62.89 E-value=4.7 Score=34.32 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=29.4
Q ss_pred CccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEee
Q psy3143 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276 (337)
Q Consensus 237 ~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 276 (337)
+-+++++||--.-+|......+..+++.+.....+++++.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4579999999998888878888888877754444555543
No 479
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=62.89 E-value=3.6 Score=35.31 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCccEEEEecccccccccHHHHHHHHHHHc
Q psy3143 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265 (337)
Q Consensus 235 l~~~~~iViDEad~l~~~~~~~~~~~i~~~~ 265 (337)
+.+-+++++||--.-+|......+..+++.+
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 3456799999998888876666666665544
No 480
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=62.87 E-value=4 Score=33.13 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+..+.++|++|||||...-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999998753
No 481
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=62.70 E-value=4.1 Score=33.78 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.4
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|.-+++.|+.|||||+..-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 45678899999999998753
No 482
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=62.69 E-value=10 Score=37.49 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=40.8
Q ss_pred CCCCCcCCccccCCC-CHHHHHHHHhCCC----CCChHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhH
Q psy3143 84 APPVEENSSFHQMNL-SRPLLKAIGALNY----IYPTPIQAATIPVALL---GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l-~~~l~~~l~~~~~----~~p~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~ 146 (337)
.+-....++|..+++ ++..++....... .+.+.+=..|+..++. .+.+||+|.+|+|||.+.-
T Consensus 120 G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 120 GLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp TTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred CceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 444556677888875 4556665544322 2234555567666653 3479999999999998853
No 483
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=62.52 E-value=3.2 Score=34.30 Aligned_cols=18 Identities=22% Similarity=0.181 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchhHHh
Q psy3143 128 GRDICGCAATGTGKTAAF 145 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~ 145 (337)
|.-+.+.|+.|||||+..
T Consensus 20 g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445779999999999853
No 484
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=62.48 E-value=4.2 Score=40.23 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
+.+++++||+|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4589999999999998753
No 485
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=62.44 E-value=4.7 Score=36.30 Aligned_cols=20 Identities=20% Similarity=-0.032 Sum_probs=16.2
Q ss_pred CCCCEEEEcCCCCchhHHhH
Q psy3143 127 LGRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~ 146 (337)
.|+-+++.||+|+|||+..-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999997643
No 486
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=62.20 E-value=5.1 Score=33.14 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCCCEEEEcCCCCchhHHhHH
Q psy3143 127 LGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+..+.+.|++|||||+..-.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 455688999999999987543
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=62.09 E-value=6.2 Score=34.34 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=16.3
Q ss_pred CCCCEEEEcCCCCchhHHh
Q psy3143 127 LGRDICGCAATGTGKTAAF 145 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~ 145 (337)
.++.++|+|+.|+|||...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HCSEEEEECCTTSSHHHHH
T ss_pred cCCeEEEECCCcCCHHHHH
Confidence 3678999999999999764
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=61.90 E-value=3.1 Score=36.36 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=26.8
Q ss_pred CCccEEEEecccccccccHHHHHHHHHHHcCCCCeEEEEe
Q psy3143 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275 (337)
Q Consensus 236 ~~~~~iViDEad~l~~~~~~~~~~~i~~~~~~~~q~i~~S 275 (337)
.+-+++|+||.=.-++......+..++..+.... ++++.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~i 245 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANR-TTIVV 245 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 3457999999998888776666666666554443 55543
No 489
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=61.86 E-value=4.7 Score=33.57 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCchhHHhH
Q psy3143 128 GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 128 ~~~~lv~a~TGsGKT~~~~ 146 (337)
|.-+-+.||+|||||+..-
T Consensus 25 g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 3346689999999998753
No 490
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=61.26 E-value=11 Score=37.78 Aligned_cols=63 Identities=6% Similarity=0.035 Sum_probs=41.2
Q ss_pred CCCCCcCCccccCCC-CHHHHHHHHhCCC----CCChHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhH
Q psy3143 84 APPVEENSSFHQMNL-SRPLLKAIGALNY----IYPTPIQAATIPVALL---GRDICGCAATGTGKTAAFM 146 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l-~~~l~~~l~~~~~----~~p~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~ 146 (337)
.+-....++|..+++ ++.++........ .+.+.+=..|+..++. .+.+||+|.+|+|||.+.=
T Consensus 117 G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 187 (837)
T 1kk8_A 117 GLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTK 187 (837)
T ss_dssp TTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHH
T ss_pred cceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHH
Confidence 444556678888875 5556666544322 2234555667666654 3479999999999999853
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=61.14 E-value=3.6 Score=37.53 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.2
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
-++++|++|||||+.+-
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998653
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.13 E-value=5.8 Score=37.39 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCCCEEEEcCCCCchhHHhHHHHHHHhh
Q psy3143 127 LGRDICGCAATGTGKTAAFMLPILERLL 154 (337)
Q Consensus 127 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~ 154 (337)
.|.-+.+.||+|||||+...+.++.-+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999877664444443
No 493
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.71 E-value=3.4 Score=40.91 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchhHHhH
Q psy3143 130 DICGCAATGTGKTAAFM 146 (337)
Q Consensus 130 ~~lv~a~TGsGKT~~~~ 146 (337)
+++++||||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999998753
No 494
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=60.69 E-value=11 Score=37.35 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCCCCcCCccccCCC-CHHHHHHHHhCCC--CCC--hHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhHH
Q psy3143 84 APPVEENSSFHQMNL-SRPLLKAIGALNY--IYP--TPIQAATIPVALL---GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l-~~~l~~~l~~~~~--~~p--~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+-....++|..+++ ++.+++....... ..| +.+=..|+..++. .+.+||+|.+|+|||.+.-+
T Consensus 104 G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 175 (795)
T 1w7j_A 104 GIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY 175 (795)
T ss_dssp TTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred CcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHH
Confidence 444556677888775 4566666644322 223 4555667766654 34799999999999988533
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=60.62 E-value=3.7 Score=33.69 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=17.5
Q ss_pred hCCCCEEEEcCCCCchhHHhHH
Q psy3143 126 LLGRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 126 ~~~~~~lv~a~TGsGKT~~~~~ 147 (337)
+.|.-+++.|+.|||||+..-.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHH
Confidence 4567788999999999987644
No 496
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=60.43 E-value=2.1 Score=41.35 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=26.2
Q ss_pred cCCCEEEECcHHHHHHHhcCC---CC-CCCCccEEEEeccccccc
Q psy3143 211 KCPDIVIATPGRLLDHLHNTP---SF-SLSDIEVLVLDEADRMLD 251 (337)
Q Consensus 211 ~~~~Ilv~Tp~~l~~~l~~~~---~~-~l~~~~~iViDEad~l~~ 251 (337)
..+||||+....|++...+.. .+ ....-.++||||||.+.+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 346999999877655432211 01 123446999999999864
No 497
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=60.41 E-value=12 Score=37.22 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=41.5
Q ss_pred CCCCCcCCccccCCC-CHHHHHHHHhCCC----CCChHHHHHHHHHHhC---CCCEEEEcCCCCchhHHhHH
Q psy3143 84 APPVEENSSFHQMNL-SRPLLKAIGALNY----IYPTPIQAATIPVALL---GRDICGCAATGTGKTAAFML 147 (337)
Q Consensus 84 ~~~~~~~~~f~~~~l-~~~l~~~l~~~~~----~~p~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~~ 147 (337)
.+.....++|..+++ ++..++....... .+.+.+=..|+..++. .+.+||+|.+|+|||.+.-.
T Consensus 119 G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 190 (783)
T 4db1_A 119 GLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR 190 (783)
T ss_dssp TTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred CceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH
Confidence 344556677888876 4556666543322 2234566667666653 34799999999999998643
No 498
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=60.37 E-value=70 Score=26.91 Aligned_cols=96 Identities=15% Similarity=0.244 Sum_probs=59.9
Q ss_pred CCCCchhHHhHHHHHHHhhcCCCCCCCeeEEEEcCCHHHHHHHHHHHHHHhhccCcEEEEEeCCccHHHHHHH---Hhc-
Q psy3143 136 ATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV---LRK- 211 (337)
Q Consensus 136 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~~- 211 (337)
...+||..+. .-++..+.. .+.++||.+.++..+..+...+.... ++.+..+.|+.+....... ++.
T Consensus 92 ~~~s~K~~~L-~~ll~~~~~-----~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 92 VRRSGKMIRT-MEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNN 162 (271)
T ss_dssp STTCHHHHHH-HHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred cccCHHHHHH-HHHHHHHHh-----CCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCC
Confidence 4567887653 334444421 25689999999998888777776532 4667778888875544332 222
Q ss_pred -CCC-EEEECcHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy3143 212 -CPD-IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247 (337)
Q Consensus 212 -~~~-Ilv~Tp~~l~~~l~~~~~~~l~~~~~iViDEad 247 (337)
.+. ++++|- .. ...+++...++||+=+..
T Consensus 163 ~~~~v~L~st~------~~-g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 163 PSVKFIVLSVK------AG-GFGINLTSANRVIHFDRW 193 (271)
T ss_dssp TTCCEEEEECC------TT-CCCCCCTTCSEEEECSCC
T ss_pred CCCCEEEEehh------hh-cCCcCcccCCEEEEECCC
Confidence 345 566662 11 236788888888875444
No 499
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=60.12 E-value=4 Score=32.16 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCchhHH
Q psy3143 129 RDICGCAATGTGKTAA 144 (337)
Q Consensus 129 ~~~lv~a~TGsGKT~~ 144 (337)
-.+++.|++|+|||..
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTI 37 (190)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3789999999999974
No 500
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=60.12 E-value=6.8 Score=34.38 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.8
Q ss_pred EEEEcCCCCchhHHh
Q psy3143 131 ICGCAATGTGKTAAF 145 (337)
Q Consensus 131 ~lv~a~TGsGKT~~~ 145 (337)
+-+.||+|||||+..
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 558999999999864
Done!