AmiGO: BLAST Results


BLAST match view associations BLAST with Rs1 Rs1 Rs1	protein from Drosophila melanogaster	7.2e-84
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	gene_product from Danio rerio	2.4e-76
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	1.3e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Bos taurus	1.7e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Homo sapiens	2.1e-75
BLAST match view associations BLAST with Ddx27 Ddx27 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein from Mus musculus	1.5e-74
BLAST match view associations BLAST with LOC100626268 LOC100626268 LOC100626268 Uncharacterized protein	protein from Sus scrofa	3.3e-70
BLAST match view associations BLAST with Y71G12B.8 Y71G12B.8 Y71G12B.8	gene from Caenorhabditis elegans	3.5e-68
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Magnaporthe oryzae 70-15	6.9e-61
BLAST match view associations BLAST with DRS1 DRS1 DRS1 Nucleolar DEAD-box protein required for ribosome assembly and function	gene from Saccharomyces cerevisiae	1.1e-57
BLAST match view associations BLAST with DRS1 DRS1 DRS1	gene_product from Candida albicans	5.9e-57
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Candida albicans SC5314	5.9e-57
BLAST match view associations BLAST with AT4G16630 AT4G16630 AT4G16630	protein from Arabidopsis thaliana	4.2e-56
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	4.3e-54
BLAST match view associations BLAST with HAS1 HAS1 HAS1	gene_product from Candida albicans	1.6e-38
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase HAS1	protein from Candida albicans SC5314	1.6e-38
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Gallus gallus	7.0e-38
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	1.7e-37
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Bos taurus	3.9e-37
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase	gene from Saccharomyces cerevisiae	3.9e-37
BLAST match view associations BLAST with T26G10.1 T26G10.1 T26G10.1	gene from Caenorhabditis elegans	6.3e-37
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	1.3e-36
BLAST match view associations BLAST with I3L976 I3L976 I3L976 Uncharacterized protein	protein from Sus scrofa	1.3e-36
BLAST match view associations BLAST with Ddx47 Ddx47 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein from Mus musculus	1.3e-36
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Canis lupus familiaris	1.7e-36
BLAST match view associations BLAST with RRP3 RRP3 RRP3 Protein involved in rRNA processing	gene from Saccharomyces cerevisiae	4.4e-36
BLAST match view associations BLAST with AT3G18600 AT3G18600 AT3G18600	protein from Arabidopsis thaliana	5.3e-36
BLAST match view associations BLAST with ddx54 ddx54 ddx54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	gene_product from Danio rerio	7.8e-36
BLAST match view associations BLAST with zgc:112350 zgc:112350 zgc:112350	gene_product from Danio rerio	9.2e-36
BLAST match view associations BLAST with CG9253 CG9253 CG9253	protein from Drosophila melanogaster	1.9e-35
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.2e-35
BLAST match view associations BLAST with orf19.7546 orf19.7546 orf19.7546	gene_product from Candida albicans	3.1e-35
BLAST match view associations BLAST with DDX54 DDX54 DDX54 Uncharacterized protein	protein from Gallus gallus	2.9e-34
BLAST match view associations BLAST with Ddx54 Ddx54 Ddx54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein from Mus musculus	3.3e-34
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Gallus gallus	3.7e-34
BLAST match view associations BLAST with Ddx54 Ddx54 Ddx54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	gene from Rattus norvegicus	4.7e-34
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c RNA helicase, putative	gene from Plasmodium falciparum	5.0e-34
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	5.0e-34
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	5.8e-34
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	5.8e-34
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.0e-34
BLAST match view associations BLAST with DDX54 DDX54 DDX54 ATP-dependent RNA helicase DDX54	protein from Homo sapiens	9.2e-34
BLAST match view associations BLAST with Ddx18 Ddx18 Ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	gene from Rattus norvegicus	1.1e-33
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.5e-33
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	2.0e-33
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	2.0e-33
BLAST match view associations BLAST with helA helA helA putative RNA helicase	gene from Dictyostelium discoideum	3.0e-33
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.2e-33
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	3.2e-33
BLAST match view associations BLAST with ddx10 ddx10 ddx10 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.4e-33
BLAST match view associations BLAST with Ddx18 Ddx18 Ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein from Mus musculus	3.6e-33
BLAST match view associations BLAST with PFL2475w PFL2475w PFL2475w DEAD/DEAH box helicase, putative	gene from Plasmodium falciparum	4.1e-33
BLAST match view associations BLAST with PFL2475w PFL2475w PFL2475w DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	4.1e-33
BLAST match view associations BLAST with DDX54 DDX54 DDX54 Uncharacterized protein	protein from Bos taurus	5.1e-33
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-33
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-33
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	gene_product from Danio rerio	1.2e-32
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.4e-32
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 Putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	1.8e-32
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	1.8e-32
BLAST match view associations BLAST with CPS_1418 CPS_1418 CPS_1418 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	2.3e-32
BLAST match view associations BLAST with Y94H6A.5 Y94H6A.5 Y94H6A.5	gene from Caenorhabditis elegans	2.9e-32
BLAST match view associations BLAST with SO_1501 SO_1501 SO_1501 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	2.9e-32
BLAST match view associations BLAST with SO_1501 SO_1501 SO_1501 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.9e-32
BLAST match view associations BLAST with HCA4 HCA4 HCA4	gene_product from Candida albicans	3.4e-32
BLAST match view associations BLAST with DDX54 DDX54 DDX54 ATP-dependent RNA helicase DDX54	protein from Homo sapiens	3.7e-32
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.7e-32
BLAST match view associations BLAST with CPS_4097 CPS_4097 CPS_4097 ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	3.7e-32
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	3.7e-32
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	3.9e-32
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	3.9e-32
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	4.7e-32
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Canis lupus familiaris	6.0e-32
BLAST match view associations BLAST with DBP10 DBP10 DBP10 Putative ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	6.2e-32
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Bos taurus	7.8e-32
BLAST match view associations BLAST with F1MSX0 F1MSX0 F1MSX0 Uncharacterized protein	protein from Bos taurus	8.0e-32
BLAST match view associations BLAST with B0511.6 B0511.6 B0511.6	gene from Caenorhabditis elegans	9.6e-32
BLAST match view associations BLAST with GSU_0491 GSU_0491 GSU_0491 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	9.8e-32
BLAST match view associations BLAST with F1SV16 F1SV16 F1SV16 Uncharacterized protein	protein from Sus scrofa	1.3e-31
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	1.3e-31
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.3e-31
BLAST match view associations BLAST with DDX18 DDX18 DDX18 ATP-dependent RNA helicase DDX18	protein from Homo sapiens	1.7e-31
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	2.0e-31
BLAST match view associations BLAST with AT5G60990 AT5G60990 AT5G60990	protein from Arabidopsis thaliana	2.0e-31
BLAST match view associations BLAST with ddx10 ddx10 ddx10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	gene_product from Danio rerio	2.1e-31
BLAST match view associations BLAST with ddx47 ddx47 ddx47 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.2e-31
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	2.6e-31
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy3143
        (337 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil...   840  7.2e-84   1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-...   769  2.4e-76   1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"...   762  1.3e-75   1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R...   761  1.7e-75   1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"...   760  2.1e-75   1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"...   760  2.1e-75   1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R...   760  2.1e-75   1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"...   754  9.3e-75   1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo...   752  1.5e-74   1
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p...   711  3.3e-70   1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor...   692  3.5e-68   1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he...   634  4.8e-62   1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas...   593  6.9e-61   2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme...   602  1.2e-58   1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ...   593  1.1e-57   1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica...   586  5.9e-57   1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas...   586  5.9e-57   1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi...   578  4.2e-56   1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli...   559  4.3e-54   1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer...   423  1.1e-39   1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica...   412  1.6e-38   1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas...   412  1.6e-38   1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"...   406  7.0e-38   1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi...   406  1.7e-37   1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R...   399  3.9e-37   1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"...   399  3.9e-37   1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh...   397  6.3e-37   1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R...   394  1.3e-36   1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"...   394  1.3e-36   1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo...   394  1.3e-36   1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1...   394  1.3e-36   1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"...   393  1.7e-36   1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr...   389  4.4e-36   1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi...   389  5.3e-36   1
ZFIN|ZDB-GENE-021220-2 - symbol:ddx54 "DEAD (Asp-Glu-Ala-...   396  7.8e-36   1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"...   386  9.2e-36   1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m...   383  1.9e-35   1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli...   386  2.2e-35   1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ...   381  3.1e-35   1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer...   378  1.9e-34   1
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"...   381  2.9e-34   1
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he...   381  3.1e-34   1
MGI|MGI:1919240 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) bo...   381  3.3e-34   1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"...   377  3.7e-34   1
RGD|1562539 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box po...   380  4.7e-34   1
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica...   352  5.0e-34   2
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas...   352  5.0e-34   2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel...   369  5.8e-34   1
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he...   369  5.8e-34   1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli...   368  8.0e-34   1
UNIPROTKB|Q8TDD1 - symbol:DDX54 "ATP-dependent RNA helica...   377  9.2e-34   1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1...   373  1.0e-33   1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po...   373  1.1e-33   1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli...   365  1.5e-33   1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R...   365  1.5e-33   1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas...   364  2.0e-33   1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he...   364  2.0e-33   1
DICTYBASE|DDB_G0292992 - symbol:helA "putative RNA helica...   374  3.0e-33   1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel...   362  3.2e-33   1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he...   362  3.2e-33   1
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli...   348  3.4e-33   2
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo...   368  3.6e-33   1
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ...   350  4.1e-33   2
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas...   350  4.1e-33   2
UNIPROTKB|E1BGI6 - symbol:DDX54 "Uncharacterized protein"...   370  5.1e-33   1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli...   358  8.5e-33   1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli...   358  8.5e-33   1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A...   363  1.2e-32   1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he...   356  1.4e-32   1
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen...   355  1.8e-32   1
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende...   355  1.8e-32   1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he...   354  2.3e-32   1
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh...   363  2.9e-32   1
UNIPROTKB|Q8EGU0 - symbol:SO_1501 "ATP-dependent RNA heli...   353  2.9e-32   1
TIGR_CMR|SO_1501 - symbol:SO_1501 "ATP-dependent RNA heli...   353  2.9e-32   1
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica...   361  3.4e-32   1
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica...   352  3.7e-32   1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel...   352  3.7e-32   1
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he...   352  3.7e-32   1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he...   352  3.7e-32   1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ...   341  3.9e-32   2
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep...   341  3.9e-32   2
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he...   351  4.7e-32   1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli...   355  5.1e-32   1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"...   357  6.0e-32   1
SGD|S000002189 - symbol:DBP10 "Putative ATP-dependent RNA...   361  6.2e-32   1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"...   356  7.8e-32   1
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein...   356  8.0e-32   1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha...   351  9.6e-32   1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he...   348  9.8e-32   1
UNIPROTKB|F1SV16 - symbol:F1SV16 "Uncharacterized protein...   347  1.3e-31   1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli...   347  1.3e-31   1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli...   347  1.3e-31   1
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica...   353  1.7e-31   1
ASPGD|ASPL0000054300 - symbol:AN0583 species:162425 "Emer...   356  1.9e-31   1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   345  2.0e-31   1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi...   345  2.0e-31   1
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-...   355  2.1e-31   1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli...   348  2.2e-31   1
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"...   344  2.6e-31   1

WARNING:  Descriptions of 738 database sequences were not reported due to the
          limiting value of parameter V = 100.


>FB|FBgn0021995 [details] [associations]
            symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
            "ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
            CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
            SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
            KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
            InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
            NextBio:836725 Uniprot:Q7JQN4
        Length = 782

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 173/310 (55%), Positives = 225/310 (72%)

Query:    32 LPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENS 91
             L +DE+KHDN++ R+K   KKK+K+  +E +  +                 +A   E+ +
Sbjct:   107 LSEDELKHDNLRLREKKESKKKKKKAGEEDEEDE-------GEKMQFADTVEAN--EQIT 157

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF+QMNLSRPL++AIG L YIYPTPIQA+TIPVALLGRDI             +MLP LE
Sbjct:   158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217

Query:   152 RLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             RLLY+P +++  TRVLVLVPTRELG QVYQVT+QL QFT+++V L++GGL+VK QE+VLR
Sbjct:   218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             + PDIVIATPGRL+DH+ NTPSF+L  IEVL+LDEADRMLDE+FA QMKEII  C +TRQ
Sbjct:   278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             TMLFSATM++ V DL +VSL +P++VFV+NN +VA NLRQEF+      E     +L  +
Sbjct:   338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397

Query:   331 LLR---ENCL 337
             + R   ++C+
Sbjct:   398 ICRTFHDHCM 407


>ZFIN|ZDB-GENE-031001-8 [details] [associations]
            symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
            RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
            PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
            NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
        Length = 776

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 157/280 (56%), Positives = 195/280 (69%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSF 93
             DD+   D   +  + + KK      K+ K K+                 DA   +EN +F
Sbjct:   150 DDDDDEDEFSSADEEVLKKADTLREKQKKGKR------KMADTTEGFFEDASQYDENLTF 203

Query:    94 HQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERL 153
             H MNLSRPLLKAI  + +  PTPIQ A +PV LLG+DI             FMLP+LERL
Sbjct:   204 HDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERL 263

Query:   154 LYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
             +YKPR+ Q TRVLVLVPTRELG+QV+ V RQLAQFT++   L+VGGL++K QE+ LR  P
Sbjct:   264 IYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGP 323

Query:   214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
             D++IATPGRL+DHLHNTPSF LS IE+L+LDEADRMLDE+F  QMKEIIR+C+  RQTML
Sbjct:   324 DVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTML 383

Query:   274 FSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             FSATM++ V DL SVSL +PVR+FV++N +VA  LRQEFV
Sbjct:   384 FSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFV 423


>UNIPROTKB|F1NQV5 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
            Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
        Length = 758

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 153/231 (66%), Positives = 178/231 (77%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   ++N SF  MNLSRPLLKAI AL +  PTPIQ A IPV LLG+DI           
Sbjct:   172 DASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 231

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F+LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQF+SV   L+VGGL+V
Sbjct:   232 AAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDV 291

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K QE+ LR  PDI+IATPGRL+DHLHN PSF LS +EVL+LDEADRMLDE+F  QMKEII
Sbjct:   292 KTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEII 351

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             RLCSR RQTMLFSATMT+ V DL SVSL  P R+FV++N +VA  LRQEF+
Sbjct:   352 RLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFI 402


>UNIPROTKB|A1A4H6 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
            ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
            GeneID:514567 KEGG:bta:514567 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
            Uniprot:A1A4H6
        Length = 765

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 156/251 (62%), Positives = 183/251 (72%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   +EN SF  MNLSRPLLKAI A+ +  PTPIQ A IPV LLG+DI           
Sbjct:   179 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 238

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQF S+   L+VGGL+V
Sbjct:   239 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDV 298

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K QE+ LR  PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F  QMKEII
Sbjct:   299 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322
             R+CS  RQTMLFSATMTD V DL SVSL  PVR+FV++N +VA  LRQEF+      E  
Sbjct:   359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 418

Query:   323 LYNVLGLMLLR 333
                ++  +L+R
Sbjct:   419 REAIVAALLMR 429


>UNIPROTKB|F1Q073 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
            Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
        Length = 767

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 153/231 (66%), Positives = 176/231 (76%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   +EN SF  MNLSRPLLKAI A+ +  PTPIQ A IPV LLG+DI           
Sbjct:   179 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 238

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQF ++   L+VGGL+V
Sbjct:   239 AAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDV 298

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K QE+ LR  PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F  QMKEII
Sbjct:   299 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             R+CS  RQTMLFSATMTD V DL SVSL  PVR+FV++N +VA  LRQEFV
Sbjct:   359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFV 409


>UNIPROTKB|J9P9C6 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
            Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
        Length = 788

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 153/231 (66%), Positives = 176/231 (76%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   +EN SF  MNLSRPLLKAI A+ +  PTPIQ A IPV LLG+DI           
Sbjct:   200 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 259

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQF ++   L+VGGL+V
Sbjct:   260 AAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDV 319

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K QE+ LR  PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F  QMKEII
Sbjct:   320 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 379

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             R+CS  RQTMLFSATMTD V DL SVSL  PVR+FV++N +VA  LRQEFV
Sbjct:   380 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFV 430


>UNIPROTKB|Q96GQ7 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
            EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
            EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
            EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
            EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
            UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
            MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
            SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
            DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
            UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
            neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
            OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
            NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
            Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
        Length = 796

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 153/231 (66%), Positives = 176/231 (76%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   +EN SF  MNLSRPLLKAI A+ +  PTPIQ A IPV LLG+DI           
Sbjct:   210 DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 269

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VTRQLAQF ++   L+VGGL+V
Sbjct:   270 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDV 329

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K QE+ LR  PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F  QMKEII
Sbjct:   330 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 389

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             R+CS  RQTMLFSATMTD V DL SVSL  PVR+FV++N +VA  LRQEF+
Sbjct:   390 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFI 440


>UNIPROTKB|E1C187 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
            IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
            Uniprot:E1C187
        Length = 759

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 153/232 (65%), Positives = 178/232 (76%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXX-XXXXXXXX 141
             DA   ++N SF  MNLSRPLLKAI AL +  PTPIQ A IPV LLG+DI           
Sbjct:   172 DASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGK 231

Query:   142 XXXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
                F+LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQF+SV   L+VGGL+
Sbjct:   232 TAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLD 291

Query:   202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261
             VK QE+ LR  PDI+IATPGRL+DHLHN PSF LS +EVL+LDEADRMLDE+F  QMKEI
Sbjct:   292 VKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEI 351

Query:   262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             IRLCSR RQTMLFSATMT+ V DL SVSL  P R+FV++N +VA  LRQEF+
Sbjct:   352 IRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFI 403


>MGI|MGI:2385884 [details] [associations]
            symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
            GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
            EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
            EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
            RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
            SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
            Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
            KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
            Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
            GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
        Length = 760

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 154/251 (61%), Positives = 183/251 (72%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   +++ SF  MNLSRPLLKAI A+ +  PTPIQ A IPV LLG+DI           
Sbjct:   176 DASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 235

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQF S+   L+VGGL+V
Sbjct:   236 AAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDV 295

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K QE+ LR  PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F  QMKEII
Sbjct:   296 KSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 355

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR 322
             R+CS  RQTMLFSATMTD V DL SVSL  PVR+FV++N +VA  LRQEF+      E  
Sbjct:   356 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 415

Query:   323 LYNVLGLMLLR 333
                ++  +L+R
Sbjct:   416 REAIVAALLMR 426


>UNIPROTKB|I3LQ10 [details] [associations]
            symbol:LOC100626268 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
            Uniprot:I3LQ10
        Length = 684

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 153/257 (59%), Positives = 180/257 (70%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA   +EN SF  MNLSRPLLKAI  + +  PTPIQ A IPV LLG+DI           
Sbjct:   203 DASQYDENLSFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKT 262

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-----FTSVEVALSV 197
               F LP+LERL+YKPR    TRVLVLVPTRELG+QV+ VT+QLAQ      T++   L  
Sbjct:   263 AAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTIS-GLFA 321

Query:   198 GGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
             GGL+VK QE+ LR   PDI+IATPGRL+DHLHN PSF LS IEVL+LDEADRMLDE+F  
Sbjct:   322 GGLDVKSQEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 381

Query:   257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316
             QMKEIIR+CS  RQTMLFSATMTD V DL SVSL  PVR+FV++N +VA  LRQEF+   
Sbjct:   382 QMKEIIRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIR 441

Query:   317 NIDEVRLYNVLGLMLLR 333
                E     ++  +L+R
Sbjct:   442 PNREGDREAIVAALLMR 458


>WB|WBGene00022148 [details] [associations]
            symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
            ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
            EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
            UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
            OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
        Length = 739

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 143/281 (50%), Positives = 188/281 (66%)

Query:    36 EMKHDNIKNRQKLIGKKKQ---KRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSS 92
             E K +   + Q+L GK+ +   +   K GK K+                 D      N S
Sbjct:    93 EEKDEEEDDVQQLGGKETRDTVREKRKSGKSKKSQENEDFFSALIDGKSLDT---SVNVS 149

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F QMNLSR +LKA     Y  PTPIQ A IPVAL G+DI             F+LPILER
Sbjct:   150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             ++Y+P+    TRVLVLVPTREL +QV+QV R+L+ F  +EV L  GGL++K QE+ LR  
Sbjct:   210 MIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSG 269

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
             PD+V+ATPGRL+DHLHN+PSF+LS+IEVLVLDEADRML+E F  QM E+IRLC++ RQT+
Sbjct:   270 PDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTL 329

Query:   273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             LFSATMT+ +++L S+SL +PV++F++ N + AL LRQEF+
Sbjct:   330 LFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFI 370


>POMBASE|SPAC30D11.03 [details] [associations]
            symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
            RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
            EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
            NextBio:20804181 Uniprot:Q09903
        Length = 754

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 123/224 (54%), Positives = 161/224 (71%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +SSF  MNLSRP+LK +  L +  PT IQ  TIP+ALLG+DI             F++PI
Sbjct:   258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             LERLLY+P+    TRVL+L PTREL +Q + V  ++A FT + V L +GGL +K+QE  L
Sbjct:   318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQEL 377

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
             RK PDIVIATPGR +DH+ N+  F++ +IE++V+DEADRML++ FA ++ EII+ C ++R
Sbjct:   378 RKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSR 437

Query:   270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             QTMLFSATMTD V+DL+ +SL RPVRVFVDN    A  L QEFV
Sbjct:   438 QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFV 481


>UNIPROTKB|A4QYM6 [details] [associations]
            symbol:DRS1 "ATP-dependent RNA helicase DRS1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
            ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
            KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
        Length = 790

 Score = 593 (213.8 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 109/224 (48%), Positives = 161/224 (71%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             N+SF  M+LSRP+L+ + ++ +  PTPIQ+ TIP+AL+G+D+             F++PI
Sbjct:   254 NASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPI 313

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             LERLLY+P+    +RV++L PTREL +Q + V  +LA  T ++  L+VGGL +KVQES L
Sbjct:   314 LERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESEL 373

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
             R  PD++IATPGR +DH+ N+ SF++  +E+LVLDEADRML++ FA ++ EI+    ++R
Sbjct:   374 RLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSR 433

Query:   270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             QTMLFSATMT +V++L+ V L +PVR+ VD+  +  + L QEFV
Sbjct:   434 QTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFV 477

 Score = 48 (22.0 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query:    43 KNRQKLIGKKKQKRLAKE 60
             K + K I KKKQKR +K+
Sbjct:    40 KKKSKTIPKKKQKRSSKK 57


>ASPGD|ASPL0000062195 [details] [associations]
            symbol:AN10125 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
        Length = 814

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 116/231 (50%), Positives = 158/231 (68%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             DA       SF + NLSRP+L+ + A+N+  PTPIQ  TIPVALLG+DI           
Sbjct:   290 DAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKT 349

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F++PILERLL++PR    +RV +L+PTREL VQ Y V  +LA +T +     VGG  +
Sbjct:   350 AAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSL 409

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             + QE+VL+K PD++IATPGR +DH+ N+ SF++  +E+LVLDEADRML++ FA ++ EI+
Sbjct:   410 REQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEIL 469

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
                 ++RQTMLFSATMTD+V+ L+ V L RPVR+ VD     A+ L QEFV
Sbjct:   470 TTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFV 520


>SGD|S000003931 [details] [associations]
            symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
            assembly and function" species:4932 "Saccharomyces cerevisiae"
            [GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
            [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
            EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
            RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
            DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
            PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
            KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
            Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
        Length = 752

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 115/240 (47%), Positives = 166/240 (69%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F+ ++LSRP+LK + +L Y+ P+PIQ+ATIP+ALLG+DI             FM+PI+E
Sbjct:   232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQESVLR 210
             RLLYKP    +TRV+VL+PTREL +QV  V +Q+A+F S +   L+VGGL ++ QE +L+
Sbjct:   292 RLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLK 351

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
               PDIVIATPGR +DH+ N+ SF++  +E+LV+DEADRML+E F  ++ EI+ L    RQ
Sbjct:   352 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR---LYNVL 327
              +LFSATM   +  LVS+SL +PVR+ +D   + A  L QEFV     D ++   L+N++
Sbjct:   412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 471


>CGD|CAL0000864 [details] [associations]
            symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
            "cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
            GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
            STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
        Length = 613

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 117/250 (46%), Positives = 171/250 (68%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             ++ P + ++SF  + LSRP+LK I  L +  PTPIQ+A+IP+ALLG+DI           
Sbjct:   122 ESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKT 181

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLE 201
               +M+PI+ERLLYKP    +T+V++L PTREL +QVY+  ++L+   + + + L+VGGL 
Sbjct:   182 GAYMIPIIERLLYKP--STSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLN 239

Query:   202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261
             ++ QE  L+  PDIVIATPGRL+DH+ N+PSFS+ DI+VLV+DEADRML+E F  ++ EI
Sbjct:   240 LRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEI 299

Query:   262 IRLCSR-TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             + L  +  RQT+LFSATM   + DL+ +SL +PVR+ +D    VA  L Q+FV     D+
Sbjct:   300 LSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQ 359

Query:   321 VR---LYNVL 327
             ++   LY +L
Sbjct:   360 LKPALLYQLL 369


>UNIPROTKB|Q5ACK7 [details] [associations]
            symbol:DRS1 "ATP-dependent RNA helicase DRS1"
            species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
            response to drug" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
            GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
            GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
            ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
            KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
        Length = 613

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 117/250 (46%), Positives = 171/250 (68%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             ++ P + ++SF  + LSRP+LK I  L +  PTPIQ+A+IP+ALLG+DI           
Sbjct:   122 ESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKT 181

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLE 201
               +M+PI+ERLLYKP    +T+V++L PTREL +QVY+  ++L+   + + + L+VGGL 
Sbjct:   182 GAYMIPIIERLLYKP--STSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLN 239

Query:   202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261
             ++ QE  L+  PDIVIATPGRL+DH+ N+PSFS+ DI+VLV+DEADRML+E F  ++ EI
Sbjct:   240 LRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEI 299

Query:   262 IRLCSR-TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             + L  +  RQT+LFSATM   + DL+ +SL +PVR+ +D    VA  L Q+FV     D+
Sbjct:   300 LSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQ 359

Query:   321 VR---LYNVL 327
             ++   LY +L
Sbjct:   360 LKPALLYQLL 369


>TAIR|locus:2130918 [details] [associations]
            symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
            OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
            PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
            ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
            PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
            KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
            PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
            GermOnline:AT4G16630 Uniprot:Q9ZRZ8
        Length = 789

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 118/236 (50%), Positives = 156/236 (66%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F ++NLSRPLL+A   L Y  PTPIQAA IP+AL GRD+             F LP LE
Sbjct:   168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             RLL++P+    TRVL+L PTREL VQ++ + + LAQFT ++  L VGGL V+ QE VLR 
Sbjct:   228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
              PDIV+ATPGR++DHL N+ S  L D+ VL+LDEADR+L   FA+++ E++RLC + RQT
Sbjct:   288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 347

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVL 327
             MLFSATMT+ V +LV +SL +P+R+  D +      L +E V      E     VL
Sbjct:   348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVL 403


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 123/280 (43%), Positives = 166/280 (59%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSF 93
             ++E + DN    +K I KK+Q++  +  K  Q                      EE  +F
Sbjct:   140 EEEEEEDN--ENEKEINKKQQQQQQQSNK--QTTDKIKVLQSNRKLKKIVE---EELPTF 192

Query:    94 HQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERL 153
              +++LSRPLLKA+  L +  PTPIQA  IP+AL G+DI             F+LP+LERL
Sbjct:   193 EELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERL 252

Query:   154 LYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
             L++  + +  RVL+L+PTREL +Q   V   LAQF+++   L VGGL  K QE  LRK P
Sbjct:   253 LFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSP 312

Query:   214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
             D+VIATPGRL+DHL N     L D+E+L+LDEADR+LD  F  ++ +I+  C   RQTML
Sbjct:   313 DVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTML 372

Query:   274 FSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             FSAT+ D V  L  +SL +P+RV VD   +V   L QEFV
Sbjct:   373 FSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFV 412


>ASPGD|ASPL0000013201 [details] [associations]
            symbol:AN4233 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
            STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
            KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
        Length = 465

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 92/222 (41%), Positives = 126/222 (56%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF ++ +   L +A   + Y  PTPIQ+  IP+AL GRD+             F LP+L+
Sbjct:    47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
              L+  P   Q    LVL PTREL  Q+ Q    L     V  A+ VGG+++  Q   L K
Sbjct:   107 ALMEAP---QTLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGK 163

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
              P I++ATPGRLLDHL NT  FSL +++ L +DEADR+LD  F   + +IIR+  RTR T
Sbjct:   164 KPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHT 223

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              LFSATM+  V  L   SL+ PVRV V + ++    L+  ++
Sbjct:   224 YLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYI 265


>CGD|CAL0003050 [details] [associations]
            symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
            "ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
            "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
            InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
            RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
            GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
            Uniprot:Q5AK59
        Length = 565

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 100/266 (37%), Positives = 153/266 (57%)

Query:    40 DNIKNRQKLIGKKKQKRLAK-EGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNL 98
             D+I++ +     KK+K+ AK E KL+Q+                D+    E+  F   + 
Sbjct:    59 DDIEDPESKSQSKKEKQKAKDEAKLEQLTKPQVSNEVPDNDNDDDS---SEDVLFENADF 115

Query:    99 SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLY--- 155
             S P +KAI  + +   T +QA TIP  L GRD+             F++P +E LLY   
Sbjct:   116 SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE-LLYSLK 174

Query:   156 -KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPD 214
              KPR+   T V+++ PTREL +Q++ V R+L QF S    + +GG + + + + L K  +
Sbjct:   175 IKPRN--GTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVN 232

Query:   215 IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR-LCSRTRQTML 273
             +++ATPGRLLDHL NT  F  S+++ LV+DEADR+L+  F  +MK+II+ L +  RQ+ML
Sbjct:   233 LLVATPGRLLDHLKNT-QFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSML 291

Query:   274 FSATMTDAVNDLVSVSLTRPVRVFVD 299
             FSAT T  V DL  +SL RP  ++++
Sbjct:   292 FSATQTTKVEDLARISL-RPGPLYIN 316


>UNIPROTKB|Q5AK59 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase HAS1"
            species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
            subunit biogenesis" evidence=IGI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
            EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
            STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
            KEGG:cal:CaO19.3962 Uniprot:Q5AK59
        Length = 565

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 100/266 (37%), Positives = 153/266 (57%)

Query:    40 DNIKNRQKLIGKKKQKRLAK-EGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNL 98
             D+I++ +     KK+K+ AK E KL+Q+                D+    E+  F   + 
Sbjct:    59 DDIEDPESKSQSKKEKQKAKDEAKLEQLTKPQVSNEVPDNDNDDDS---SEDVLFENADF 115

Query:    99 SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLY--- 155
             S P +KAI  + +   T +QA TIP  L GRD+             F++P +E LLY   
Sbjct:   116 SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE-LLYSLK 174

Query:   156 -KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPD 214
              KPR+   T V+++ PTREL +Q++ V R+L QF S    + +GG + + + + L K  +
Sbjct:   175 IKPRN--GTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVN 232

Query:   215 IVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR-LCSRTRQTML 273
             +++ATPGRLLDHL NT  F  S+++ LV+DEADR+L+  F  +MK+II+ L +  RQ+ML
Sbjct:   233 LLVATPGRLLDHLKNT-QFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSML 291

Query:   274 FSATMTDAVNDLVSVSLTRPVRVFVD 299
             FSAT T  V DL  +SL RP  ++++
Sbjct:   292 FSATQTTKVEDLARISL-RPGPLYIN 316


>UNIPROTKB|Q5ZLB0 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
            HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
            EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
            RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
            Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
            InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
        Length = 453

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 93/231 (40%), Positives = 129/231 (55%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             + P VEE  SF  + ++  L +A   L +  PT IQ   IPVAL GRDI           
Sbjct:    17 EVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKT 76

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F LPIL+ LL  P   Q    LVL PTREL  Q+ +    L     V  A+ VGG++ 
Sbjct:    77 GAFALPILQALLDAP---QRLFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDS 133

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
               Q   L K P I+IATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I+
Sbjct:   134 MSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKIL 193

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             ++  R R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   194 KVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYI 244


>TAIR|locus:2152099 [details] [associations]
            symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
            EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
            RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
            ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
            EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
            GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
            PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
            GermOnline:AT5G65900 Uniprot:Q9SB89
        Length = 633

 Score = 406 (148.0 bits), Expect = 1.7e-37, P = 1.7e-37
 Identities = 93/259 (35%), Positives = 143/259 (55%)

Query:    51 KKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNLSRPLLKAIGALN 110
             KKK+K+  K+ + K                  +   +  N +F  ++LS    K+I  + 
Sbjct:   117 KKKKKKQRKDTEAKS---EEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMG 173

Query:   111 YIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPR-DDQN-TRVLVL 168
             +   T IQA  IP  ++G D+             F++P +E LLY+ +   +N T VLV+
Sbjct:   174 FARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE-LLYRVKFTPRNGTGVLVI 232

Query:   169 VPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLH 228
              PTREL +Q Y V ++L ++ S  V   +GG + K +  +L K  ++++ATPGRLLDHL 
Sbjct:   233 CPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLE 292

Query:   229 NTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288
             NT  F   +++ LV+DEADR+L+++F   +K+I+ L  +TRQT LFSAT +  V DL  V
Sbjct:   293 NTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARV 352

Query:   289 SLTRPVRVFVDNNHEVALN 307
             SLT PV + VD   +   N
Sbjct:   353 SLTSPVYIDVDEGRKEVTN 371


>UNIPROTKB|Q29S22 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
            process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
            IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
            ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
            Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
            HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
        Length = 457

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 92/230 (40%), Positives = 128/230 (55%)

Query:    84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXX 143
             A  VEE  +F  + ++  L +A   L +  PT IQ   IP+AL GRDI            
Sbjct:    19 AVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTG 78

Query:   144 XFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
              F LPIL  LL  P   Q    LVL PTREL  Q+ +    L     V+ A+ VGG++  
Sbjct:    79 AFALPILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSM 135

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              Q   L K P IVIATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I++
Sbjct:   136 SQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             +  R R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYL 245


>SGD|S000004903 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
            activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
            [GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
            GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
            GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
            PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
            DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
            PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
            KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
            GermOnline:YMR290C Uniprot:Q03532
        Length = 505

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 91/241 (37%), Positives = 141/241 (58%)

Query:    84 APPVEENS---SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXX 140
             AP  E+ +    F ++ LS+P LKAI  + +   T +QA TIP  L GRD+         
Sbjct:    32 APEGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSG 91

Query:   141 XXXXFMLPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV 197
                 F++P +E    L +KPR+   T ++V+ PTREL +Q++ V R+L +F S    + +
Sbjct:    92 KTLAFLIPAIELLHSLKFKPRN--GTGIIVITPTRELALQIFGVARELMEFHSQTFGIVI 149

Query:   198 GGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257
             GG   + +   L K  +++IATPGRLLDHL NT  F   +++ L++DEADR+L+  F  +
Sbjct:   150 GGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDE 209

Query:   258 MKEIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV----DNNHEVALNLRQEF 312
             M++II++  +  RQ+MLFSAT T  V DL  +SL RP  +F+    + ++  A  L Q +
Sbjct:   210 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISL-RPGPLFINVVPETDNSTADGLEQGY 268

Query:   313 V 313
             V
Sbjct:   269 V 269


>WB|WBGene00012059 [details] [associations]
            symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
            GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
            OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
            ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
            EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
            UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
            NextBio:892086 Uniprot:P34580
        Length = 489

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 89/235 (37%), Positives = 134/235 (57%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             D   V+E S F ++ +S+PL  A   L ++ P+ IQ A +P AL G+D+           
Sbjct:    37 DEEDVKEKS-FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKT 95

Query:   143 XXFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
               F +P+L+ LL  P   Q    LVL PTREL  Q+ Q    L     +  A+ VGG+++
Sbjct:    96 GAFAIPVLQSLLDHP---QAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDM 152

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
               Q   L + P I++ATPGRL+DHL NT  F+L  ++ L++DEADR+L+  F  ++ +I+
Sbjct:   153 AAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKIL 212

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317
             ++  R R+T LFSATMT  V+ L   SL  P RV V + ++   NL+Q ++   N
Sbjct:   213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPN 267


>UNIPROTKB|Q9H0S4 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
            [GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
            processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
            EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
            EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
            IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
            PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
            MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
            SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
            Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
            KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
            HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
            PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
            ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
            NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
            Genevestigator:Q9H0S4 Uniprot:Q9H0S4
        Length = 455

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 89/226 (39%), Positives = 126/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             EE  +F  + ++  L +A   L +  PT IQ   IP+AL GRDI             F L
Sbjct:    21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL  LL  P   Q    LVL PTREL  Q+ +    L     V+ A+ VGG++   Q  
Sbjct:    81 PILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P I+IATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I+++  R
Sbjct:   138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYI 243


>UNIPROTKB|I3L976 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
        Length = 456

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/226 (39%), Positives = 126/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             EE  +F  + ++  L +A   L +  PT IQ   IP+AL GRDI             F L
Sbjct:    20 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 79

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL  LL  P   Q    LVL PTREL  Q+ +    L     V+ A+ VGG++   Q  
Sbjct:    80 PILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSL 136

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P IVIATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I+++  R
Sbjct:   137 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 196

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   197 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYL 242


>MGI|MGI:1915005 [details] [associations]
            symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
            process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
            GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
            GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
            OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
            EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
            ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
            PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
            Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
            InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
            Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
        Length = 455

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/226 (39%), Positives = 126/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             EE  +F  + ++  L +A   L +  PT IQ   IP+AL GRDI             F L
Sbjct:    21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL  LL  P   Q    LVL PTREL  Q+ +    L     V+ A+ VGG++   Q  
Sbjct:    81 PILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSL 137

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P IVIATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I+++  R
Sbjct:   138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYL 243


>UNIPROTKB|G3V727 [details] [associations]
            symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
            GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
            RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
            GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
            Uniprot:G3V727
        Length = 455

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/226 (39%), Positives = 126/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             EE  +F  + ++  L +A   L +  PT IQ   IP+AL GRDI             F L
Sbjct:    21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL  LL  P   Q    LVL PTREL  Q+ +    L     V+ A+ VGG++   Q  
Sbjct:    81 PILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSL 137

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P IVIATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I+++  R
Sbjct:   138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYL 243


>UNIPROTKB|E2RN03 [details] [associations]
            symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
            OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
            NextBio:20853120 Uniprot:E2RN03
        Length = 482

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 90/226 (39%), Positives = 126/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             EE  +F  + ++  L +A   L +  PT IQ   IP+AL GRDI             F L
Sbjct:    47 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 106

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL  LL  P   Q    LVL PTREL  Q+ +    L     V+ A+ VGG++   Q  
Sbjct:   107 PILNALLETP---QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 163

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P IVIATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  F +++ +I+++  R
Sbjct:   164 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 223

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   224 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYL 269


>SGD|S000001107 [details] [associations]
            symbol:RRP3 "Protein involved in rRNA processing"
            species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
            SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
            LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
            GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
            RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
            DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
            PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
            KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
            GermOnline:YHR065C Uniprot:P38712
        Length = 501

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 90/224 (40%), Positives = 121/224 (54%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             E   SF ++NL   L++A   LNY  PTPIQ+  IP AL G DI             F +
Sbjct:    78 ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 137

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL RL +   D +     +L PTREL  Q+ +    L     V     VGG+ +  Q  
Sbjct:   138 PILNRLWH---DQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQAR 194

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-S 266
              L + P I+IATPGRL+DHL NT  FSL  ++ LV+DEADR+LD  F   +  I+++  +
Sbjct:   195 DLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT 254

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             + R T LFSATMT  ++ L   SLT PV+  V N ++    L Q
Sbjct:   255 QERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQ 298


>TAIR|locus:2086909 [details] [associations]
            symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0034968
            "histone lysine methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
            RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
            SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
            EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
            GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
            ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
            Uniprot:Q9LIH9
        Length = 568

 Score = 389 (142.0 bits), Expect = 5.3e-36, P = 5.3e-36
 Identities = 88/220 (40%), Positives = 127/220 (57%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             N +F  ++LS     AI  + + Y T IQA +I   L G+D+             F++P 
Sbjct:    88 NVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPA 147

Query:   150 LERLLYKPR-DDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             +E LL+K R   +N T V+V+ PTREL +Q   V  +L +  S  V++ +GG   + +  
Sbjct:   148 VE-LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQ 206

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              +    ++VIATPGRLLDHL NT +F    ++ LV+DEADR+L+E+F   M +I+++  +
Sbjct:   207 RIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPK 266

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN 307
             TRQT LFSAT T  V DL  VSLT PV V VD+      N
Sbjct:   267 TRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTN 306


>ZFIN|ZDB-GENE-021220-2 [details] [associations]
            symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
            HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
            HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
            EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
            STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
            GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
        Length = 862

 Score = 396 (144.5 bits), Expect = 7.8e-36, P = 7.8e-36
 Identities = 86/233 (36%), Positives = 131/233 (56%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIPV L G+D+             F++
Sbjct:    75 KKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLV 134

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             P+ E+L   P+     R L+L PTREL +Q  + T++L +FT +  AL +GG  +  Q +
Sbjct:   135 PLFEKLK-APQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFA 193

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L + PDI+I TPGRL+ H+    +  L  +E +V DEADR+ +  FA Q++EIIR    
Sbjct:   194 ALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPD 252

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
              RQT+LFSAT+   + +     LT PV + +D + +++  L+  F S   +D+
Sbjct:   253 ARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSL-RLDD 304


>ZFIN|ZDB-GENE-050522-359 [details] [associations]
            symbol:zgc:112350 "zgc:112350" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
            EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
            UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
            KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
        Length = 512

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 90/241 (37%), Positives = 135/241 (56%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             E ++SF ++ ++  L +A   L +  PT IQ   IPVAL GRD+             F +
Sbjct:    76 EIHTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAV 135

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             P+L+ LL      Q    LVL PTREL  Q+ +    L     V+ A+ VGG+++  Q  
Sbjct:   136 PVLQSLLACA---QRLHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQAL 192

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
             VL K P +VIATPGRL+DH+ NT  F+L  ++ LV+DEADR+L+  F S++ +I+++  R
Sbjct:   193 VLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPR 252

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF-SNIDEVRLYNV 326
              R+T LFSATMT  V  L   +L  PV+  V + +     L+Q ++   S   +  L ++
Sbjct:   253 DRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSI 312

Query:   327 L 327
             L
Sbjct:   313 L 313


>FB|FBgn0032919 [details] [associations]
            symbol:CG9253 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
            PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
            OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
        Length = 507

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 97/298 (32%), Positives = 150/298 (50%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSF 93
             +DE       + ++ +G ++++   ++   K+                 DA   E+  ++
Sbjct:     6 EDEQTQLQTSDEEEDLGSEEEQE-DEDNNHKEGDSEAALSGEDDKGSEDDAAE-EQKLTW 63

Query:    94 HQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERL 153
               + L+  L +A   L +  P+ IQ   IPVAL G+D+             F LPIL  L
Sbjct:    64 KDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHAL 123

Query:   154 LYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
             L  P   Q    LVL PTREL  Q+ +    L     ++  + VGG+++  Q   L K P
Sbjct:   124 LENP---QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKP 180

Query:   214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
              I+IATPGRL+DHL N   F+L  I+ LV+DEADR+L+  F  ++ +I+++  R R+T L
Sbjct:   181 HIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFL 240

Query:   274 FSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF----VSFSNIDEVRLYNVL 327
             FSATMT  V  L   SL  PV+V V N ++    L+Q +    V + ++  V + N L
Sbjct:   241 FSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNEL 298


>DICTYBASE|DDB_G0282741 [details] [associations]
            symbol:ddx18 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
            GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
            RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
            EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
            KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
        Length = 602

 Score = 386 (140.9 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 87/232 (37%), Positives = 136/232 (58%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +E+  F  + +     K+I  + +   TPIQA +I   L G+D+             F++
Sbjct:   116 KESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLI 175

Query:   148 PILERLL---YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
             P +E L+   +KPR+   T V+++ PTREL +Q+Y V R+L ++ +    + +GG   K 
Sbjct:   176 PAIEVLVKSNFKPRN--GTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKP 233

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             +E  L K  ++++ATPGRLLDHL NT  F   +++ L++DEADR+L+  F  +M +II+ 
Sbjct:   234 EEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKK 293

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
               +TRQTMLFSAT T  V+D+  VSL   PV V VD+  E++    L Q +V
Sbjct:   294 VPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYV 345


>CGD|CAL0000056 [details] [associations]
            symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
            ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
            KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
        Length = 539

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 92/280 (32%), Positives = 146/280 (52%)

Query:    35 DEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVE-ENSSF 93
             +++K   ++ +QK   +K+Q++        +                 D P  E +  +F
Sbjct:    69 EKIKQQALQKQQKQ--QKQQEQENANHNQTESSLSSSSSTTSSSITTID-PDAELKFKTF 125

Query:    94 HQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERL 153
              ++NL   LL++I ++ +  PTPIQ+  IP AL G+DI             F +PIL+ L
Sbjct:   126 KELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185

Query:   154 LYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
              +     Q    LVL PTREL  Q+      L     +  +  VGG+++  Q   L + P
Sbjct:   186 WHA---QQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKP 242

Query:   214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
              +++ATPGR++DHL +T  FSL +++ LV+DEADR+LD  F   + +I+++    R T L
Sbjct:   243 HVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYL 302

Query:   274 FSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             FSATMT+ +  L   SL  PVRV V + ++ A NL Q  +
Sbjct:   303 FSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMM 342


>ASPGD|ASPL0000044206 [details] [associations]
            symbol:AN1949 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
            preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
            "preribosome, large subunit precursor" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
            GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
            ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
            EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
            OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
        Length = 609

 Score = 378 (138.1 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 88/228 (38%), Positives = 129/228 (56%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F ++ LS   L+ I  + +   T IQ  TIP  L GRD+             F++P +E 
Sbjct:   130 FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 189

Query:   153 LL---YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             L    +KPR+   T V+V+ PTREL +Q++ V R+L    S    + +GG   + +   L
Sbjct:   190 LSALRFKPRN--GTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKL 247

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC-SRT 268
              K  +++IATPGRLLDHL NTP F   +++ LV+DEADR+L+  F  +M++II++  +  
Sbjct:   248 TKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNED 307

Query:   269 RQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNN--HEVALNLRQEFV 313
             RQTMLFSAT T  V DL  +SL   P+ + VD+   H     L Q +V
Sbjct:   308 RQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYV 355


>UNIPROTKB|F1NTK9 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003714 "transcription corepressor
            activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
            EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
            Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
        Length = 822

 Score = 381 (139.2 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 83/225 (36%), Positives = 128/225 (56%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K +    Y  PTPIQ  TIPV L GRD+             F+L
Sbjct:    33 KKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLL 92

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             P+ ERL  K       R L+L PTREL +Q  + T++L +FT ++ AL +GG +++ Q +
Sbjct:    93 PMFERL--KAPSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFA 150

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L + PDI+IATPGRL+ H+    +  L  +E +V DEADR+ +  FA Q++EI+     
Sbjct:   151 ALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPG 209

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
             + QT+LFSAT+   + +     LT P+ + +D   +++  L+  F
Sbjct:   210 SHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAF 254


>POMBASE|SPAC31A2.07c [details] [associations]
            symbol:dbp10 "ATP-dependent RNA helicase Dbp10
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
            EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
            ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
            GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
            Uniprot:Q09719
        Length = 848

 Score = 381 (139.2 bits), Expect = 3.1e-34, P = 3.1e-34
 Identities = 90/238 (37%), Positives = 131/238 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             S+F  M L++ LL+AI    +  PTPIQ  TIP+ L GRD+             F++P++
Sbjct:    69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             E L      + NTR L+L P REL +Q  +V +  ++ T +     VGG+ ++ Q S+L 
Sbjct:   129 EHLK-STLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
               PDIV+ATPGR L HL       LS IE +V DEADR+ +  FA+Q+ EI+     +RQ
Sbjct:   188 GKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQ 246

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID-EVRLYNVL 327
             T+LFSAT+   + D     L  PV V +D   +V+ +L+  F S    + E  L  +L
Sbjct:   247 TLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCIL 304


>MGI|MGI:1919240 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003714 "transcription corepressor activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005102 "receptor binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
            EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
            UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
            PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
            Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
            UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
            Genevestigator:Q8K4L0 Uniprot:Q8K4L0
        Length = 874

 Score = 381 (139.2 bits), Expect = 3.3e-34, P = 3.3e-34
 Identities = 87/227 (38%), Positives = 130/227 (57%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIPV L G+D+             F+L
Sbjct:    92 KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLL 151

Query:   148 PILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             P+ ERL  K R  Q   R L+L PTREL +Q  + T++L +FT ++ AL +GG +++ Q 
Sbjct:   152 PMFERL--KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQF 209

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ H+    +  L  +E +V DEADR+ +  FA Q++EII    
Sbjct:   210 AALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
                QT+LFSAT+   + +     LT PV + +D + ++   L+  F+
Sbjct:   269 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFL 315


>UNIPROTKB|F1NEQ3 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
            IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
        Length = 659

 Score = 377 (137.8 bits), Expect = 3.7e-34, P = 3.7e-34
 Identities = 93/234 (39%), Positives = 132/234 (56%)

Query:    89 ENSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  +   +S   LK I  + + + T IQ  +I   L GRDI             F+
Sbjct:   162 EDNSFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFL 221

Query:   147 LPILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
             +P +E L+YK    PR+   T V++L PTREL +Q Y V ++L         L +GG   
Sbjct:   222 IPAVE-LIYKLKFMPRN--GTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNR 278

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
               +   L    +I++ATPGRLLDH+ NTP F   +++ LV+DEADR+L+  F  +MK+II
Sbjct:   279 SAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQII 338

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             +L  + RQTMLFSAT T  V DL  +SL + P+ V VD+N E A    L Q +V
Sbjct:   339 KLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYV 392


>RGD|1562539 [details] [associations]
            symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
            species:10116 "Rattus norvegicus" [GO:0003714 "transcription
            corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
            "RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
            GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000075100 IPI:IPI00193685
            Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
            Uniprot:D3ZHY6
        Length = 906

 Score = 380 (138.8 bits), Expect = 4.7e-34, P = 4.7e-34
 Identities = 87/226 (38%), Positives = 129/226 (57%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIPV L G+D+             F+L
Sbjct:    92 KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLL 151

Query:   148 PILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             P+ ERL  K R  Q   R L+L PTREL +Q  + T++L +FT ++ AL +GG +++ Q 
Sbjct:   152 PMFERL--KARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQF 209

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ H+    +  L  +E +V DEADR+ +  FA Q++EII    
Sbjct:   210 AALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 268

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
                QT+LFSAT+   + +     LT PV + +D + ++   L+  F
Sbjct:   269 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF 314


>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
            symbol:PFB0860c "RNA helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
            KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
            ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
            GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
            OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
        Length = 562

 Score = 352 (129.0 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
 Identities = 76/226 (33%), Positives = 125/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             ++N +F  +N+   +L++I  L +  PT IQ   +P A L +DI             F++
Sbjct:   153 KQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFII 212

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL+ L     + Q+   LV+ PTREL +Q+ Q  + L     + +    GG+++  Q  
Sbjct:   213 PILQDLKV---NKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSL 269

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P+++++TPGR+LDHL+NT  F+L +++ LV DEAD++L + F S + +++ +   
Sbjct:   270 NLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPP 329

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R T LFSATMT  V  L    L  PV+V V N +     L + ++
Sbjct:   330 NRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYI 375

 Score = 41 (19.5 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQ--KRLAKEGKLKQ 65
             D+E +H  IK +++L  +KKQ  K+  K  K K+
Sbjct:    35 DEEYEH-KIKKKEQLKLQKKQIKKQEHKNEKKKK 67


>UNIPROTKB|O96264 [details] [associations]
            symbol:PFB0860c "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
            RefSeq:XP_001349688.1 ProteinModelPortal:O96264
            EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
            EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
            Uniprot:O96264
        Length = 562

 Score = 352 (129.0 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
 Identities = 76/226 (33%), Positives = 125/226 (55%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             ++N +F  +N+   +L++I  L +  PT IQ   +P A L +DI             F++
Sbjct:   153 KQNVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFII 212

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             PIL+ L     + Q+   LV+ PTREL +Q+ Q  + L     + +    GG+++  Q  
Sbjct:   213 PILQDLKV---NKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSL 269

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L K P+++++TPGR+LDHL+NT  F+L +++ LV DEAD++L + F S + +++ +   
Sbjct:   270 NLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPP 329

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
              R T LFSATMT  V  L    L  PV+V V N +     L + ++
Sbjct:   330 NRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYI 375

 Score = 41 (19.5 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQ--KRLAKEGKLKQ 65
             D+E +H  IK +++L  +KKQ  K+  K  K K+
Sbjct:    35 DEEYEH-KIKKKEQLKLQKKQIKKQEHKNEKKKK 67


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 89/219 (40%), Positives = 120/219 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F   +L   LLKAI    Y  PT IQ  +IP+ L   D+             F LPIL+
Sbjct:     6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             +L+         R LVL PTREL  QV++      QFT V + ++ GG+  K Q S L+ 
Sbjct:    66 QLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKV 125

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI+IATPGRLLD L  T S SLS+IE LV DEADRMLD  F  ++ +I +   +T+QT
Sbjct:   126 GVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQT 184

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +LFSAT  D +  +    L  P  V +D  ++ A ++ Q
Sbjct:   185 LLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQ 223


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 89/219 (40%), Positives = 120/219 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F   +L   LLKAI    Y  PT IQ  +IP+ L   D+             F LPIL+
Sbjct:     6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             +L+         R LVL PTREL  QV++      QFT V + ++ GG+  K Q S L+ 
Sbjct:    66 QLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKV 125

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI+IATPGRLLD L  T S SLS+IE LV DEADRMLD  F  ++ +I +   +T+QT
Sbjct:   126 GVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQT 184

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +LFSAT  D +  +    L  P  V +D  ++ A ++ Q
Sbjct:   185 LLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQ 223


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 368 (134.6 bits), Expect = 8.0e-34, P = 8.0e-34
 Identities = 83/221 (37%), Positives = 120/221 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS PL KA+    Y  P+PIQA  IP  L G+D+             F LP+LE
Sbjct:     2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query:   152 RLL--YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
              L   +K +  Q TR LVL PTREL  QV +      ++  +  A+  GG+ +  Q + L
Sbjct:    62 LLAKGHKAKSGQ-TRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
             R   D+++ATPGRLLD +    +   + +E+LVLDEADRMLD  F   +K+I+ L    R
Sbjct:   121 RHGVDVLVATPGRLLDLVQQN-AVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179

Query:   270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             Q ++FSAT +D + +L    +  PV + V   +  A  ++Q
Sbjct:   180 QNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQ 220


>UNIPROTKB|Q8TDD1 [details] [associations]
            symbol:DDX54 "ATP-dependent RNA helicase DDX54"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=IDA] [GO:0005102
            "receptor binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
            "RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0030520 "intracellular estrogen receptor signaling pathway"
            evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
            EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
            IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
            RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
            SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
            DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
            DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
            GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
            CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
            MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
            HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
            NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
            Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
        Length = 881

 Score = 377 (137.8 bits), Expect = 9.2e-34, P = 9.2e-34
 Identities = 87/226 (38%), Positives = 127/226 (56%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIPV L G+D+             F+L
Sbjct:    93 KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLL 152

Query:   148 PILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             P+ ERL  K    Q   R L+L PTREL +Q  + T++L +FT ++ AL +GG  ++ Q 
Sbjct:   153 PMFERL--KTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQF 210

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ H+    S  L  +E +V DEADR+ +  FA Q++EII    
Sbjct:   211 AALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP 269

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
                QT+LFSAT+   + +     LT PV + +D + ++   L+  F
Sbjct:   270 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSF 315


>UNIPROTKB|D4A824 [details] [associations]
            symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
            norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
            ArrayExpress:D4A824 Uniprot:D4A824
        Length = 662

 Score = 373 (136.4 bits), Expect = 1.0e-33, P = 1.0e-33
 Identities = 93/233 (39%), Positives = 134/233 (57%)

Query:    89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  + NL +   LKAI  + + + T IQ  +I   L GRD+             F+
Sbjct:   167 EDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 226

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P++E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   227 IPVIELIVKLKFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 284

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   285 AEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 344

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++ EVA    L Q +V
Sbjct:   345 LLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYV 397


>RGD|1549712 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
            RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
            Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
            UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
            Genevestigator:Q5XHY0 Uniprot:Q5XHY0
        Length = 674

 Score = 373 (136.4 bits), Expect = 1.1e-33, P = 1.1e-33
 Identities = 93/233 (39%), Positives = 134/233 (57%)

Query:    89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  + NL +   LKAI  + + + T IQ  +I   L GRD+             F+
Sbjct:   179 EDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 238

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P++E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   239 IPVIELIVKLKFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 296

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   297 AEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 356

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++ EVA    L Q +V
Sbjct:   357 LLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYV 409


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 79/220 (35%), Positives = 123/220 (55%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F   +    +L+AI    Y   TPIQ   IP    G+D+             F LPIL++
Sbjct:     3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query:   153 LLYKPRDD--QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++  P +    NTRVL+L PTREL  QV +     +++ +  V    GG++V+ Q   L+
Sbjct:    63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             +  DI++ATPGRLL+HL    + SLS ++ LVLDEADRMLD  F++ +++I++  ++ RQ
Sbjct:   123 RGADIIVATPGRLLEHL-TACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
              +LFSAT + AV  L +  + +P  +  D  +  A  + Q
Sbjct:   182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQ 221


>POMBASE|SPAC823.08c [details] [associations]
            symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
            SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
            KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
        Length = 465

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/266 (32%), Positives = 130/266 (48%)

Query:    51 KKKQKRLAKEGKL-KQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNLSRPLLKAIGAL 109
             +KK     K   L K++                D+   E   +F ++ +   L +A   L
Sbjct:     5 EKKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKL 64

Query:   110 NYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQNTRVLVLV 169
              +  PTPIQ   IPV L  RD+             F LP+++ L   P        +VL 
Sbjct:    65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSP---FFAVVLA 121

Query:   170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
             PTREL  Q+ +    +     V   + VGG+++  Q   L K P +++ TPGRL+DHL N
Sbjct:   122 PTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLEN 181

Query:   230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289
             T  FSL +++ L++DEADR+LD  F   + +I+++    R+T+LFSATMT  V  L   S
Sbjct:   182 TKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRAS 241

Query:   290 LTRPVRVFVDNNHEVALNLRQEFVSF 315
             L +PVRV V +       L Q ++ F
Sbjct:   242 LHQPVRVAVSSKFSTVDTLIQRYLFF 267


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 89/249 (35%), Positives = 131/249 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS  LL+AI    Y+ PTP+Q   IPV L  RD+             F LP+L+
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query:   152 RLLY-KPRDDQNT----RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             RL   +P   ++     R L+L PTREL VQV++  R   ++  ++  +  GG+ +K Q 
Sbjct:    71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + LR+  DI++ATPGRLLD L N    +LS +E  VLDEADRMLD  F   ++ I++L  
Sbjct:   131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326
              +RQ +LFSAT +  + +L    L  P  + V   +  A  +         +D  R   +
Sbjct:   190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVV---HPVDRQRKREL 246

Query:   327 LGLMLLREN 335
             L  M+  +N
Sbjct:   247 LSFMIGSKN 255


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 89/249 (35%), Positives = 131/249 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS  LL+AI    Y+ PTP+Q   IPV L  RD+             F LP+L+
Sbjct:    11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query:   152 RLLY-KPRDDQNT----RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             RL   +P   ++     R L+L PTREL VQV++  R   ++  ++  +  GG+ +K Q 
Sbjct:    71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + LR+  DI++ATPGRLLD L N    +LS +E  VLDEADRMLD  F   ++ I++L  
Sbjct:   131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326
              +RQ +LFSAT +  + +L    L  P  + V   +  A  +         +D  R   +
Sbjct:   190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVV---HPVDRQRKREL 246

Query:   327 LGLMLLREN 335
             L  M+  +N
Sbjct:   247 LSFMIGSKN 255


>DICTYBASE|DDB_G0292992 [details] [associations]
            symbol:helA "putative RNA helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
            GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
            RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
            EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
            OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
        Length = 1091

 Score = 374 (136.7 bits), Expect = 3.0e-33, P = 3.0e-33
 Identities = 102/308 (33%), Positives = 159/308 (51%)

Query:    34 DDEM--KHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENS 91
             DDE   K  N KN+      KK K+  K+ +++                  +    ++  
Sbjct:   170 DDEKQAKKSN-KNKNADADNKKSKKSNKKEEIESSEKFESFPMDENNEQEEETTSKKKKK 228

Query:    92 S--FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +  F  M+L++ LLKAI    +  PTPIQ  +IP+ L G DI             F++P+
Sbjct:   229 TGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPM 288

Query:   150 LERLLYKPRDDQNT---RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             +++L     D   T   R ++L PTREL +Q ++V +  +Q T +   L VGG  ++ Q 
Sbjct:   289 IQKL----GDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQF 344

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ HL  T   SLS ++ +V DEADR+ +  F  Q+ EI+   S
Sbjct:   345 TDLARNPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLS 403

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326
               RQT+LFSAT+   + D V   L  P  + +D + +++ NL   F +  +  E +L  V
Sbjct:   404 ENRQTLLFSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRH--EEKL-GV 460

Query:   327 LGLMLLRE 334
             L L LL++
Sbjct:   461 L-LFLLKD 467


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 91/252 (36%), Positives = 133/252 (52%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             E + +F Q+ L   LL  +  L    PTPIQ   IP  L G+D+             F L
Sbjct:     3 ELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGL 62

Query:   148 PILERLLYKP-RDDQNT---RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             P+++R + +P + + N+   R LVLVPTREL  QV    +  A+ T +++    GG  +K
Sbjct:    63 PLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
             VQ + LR   DI+IATPGRLLDH H   S  L  +EVLVLDEADRMLD  F   ++ ++R
Sbjct:   123 VQLNHLRGGVDILIATPGRLLDHAH-VKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323
               S  RQT+ FSAT    +  +    +  P+ V V  ++  A  ++Q       +D+ R 
Sbjct:   182 RLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYP---VDKKRK 238

Query:   324 YNVLGLMLLREN 335
               +L  ++  +N
Sbjct:   239 RELLSYLIGSKN 250


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 91/252 (36%), Positives = 133/252 (52%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             E + +F Q+ L   LL  +  L    PTPIQ   IP  L G+D+             F L
Sbjct:     3 ELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGL 62

Query:   148 PILERLLYKP-RDDQNT---RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             P+++R + +P + + N+   R LVLVPTREL  QV    +  A+ T +++    GG  +K
Sbjct:    63 PLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
             VQ + LR   DI+IATPGRLLDH H   S  L  +EVLVLDEADRMLD  F   ++ ++R
Sbjct:   123 VQLNHLRGGVDILIATPGRLLDHAH-VKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323
               S  RQT+ FSAT    +  +    +  P+ V V  ++  A  ++Q       +D+ R 
Sbjct:   182 RLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYP---VDKKRK 238

Query:   324 YNVLGLMLLREN 335
               +L  ++  +N
Sbjct:   239 RELLSYLIGSKN 250


>DICTYBASE|DDB_G0284017 [details] [associations]
            symbol:ddx10 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
            STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
            GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
        Length = 878

 Score = 348 (127.6 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
 Identities = 81/210 (38%), Positives = 118/210 (56%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F  + +S+  LKA+    ++  T IQ A++P  L GRDI             F+LPIL
Sbjct:   141 TDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPIL 200

Query:   151 ERLLYKP--RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             E L      RDD     +VL PTREL +Q++ V + + ++ +    L +GG  V+ QE  
Sbjct:   201 ETLWRNRWGRDD-GIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQ-QEKD 258

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
                  +I+IATPGRLL H+  T  F  S++++LVLDEADR+LD  F+  +  I+    R 
Sbjct:   259 KINAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRE 318

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
             RQT+LFSAT T ++ DL  +SL  P  + V
Sbjct:   319 RQTLLFSATQTKSIRDLARLSLQEPEYISV 348

 Score = 50 (22.7 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLK 64
             D + K D + N++    +  QKR+AK  K++
Sbjct:    45 DKDAKIDKVDNKKIFHNRSSQKRIAKLKKIE 75


>MGI|MGI:1914192 [details] [associations]
            symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
            OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
            EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
            ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
            PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
            Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
            InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
            Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
        Length = 660

 Score = 368 (134.6 bits), Expect = 3.6e-33, P = 3.6e-33
 Identities = 92/233 (39%), Positives = 133/233 (57%)

Query:    89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  + NL +   LKAI  + +   T IQ  +I   L GRD+             F+
Sbjct:   165 EDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 224

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P++E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   225 IPVIELIVKLKFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 282

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +I++ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   283 AEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 342

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++ EVA    L Q +V
Sbjct:   343 LLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYV 395


>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
            symbol:PFL2475w "DEAD/DEAH box helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
            ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
            GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
            HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
            Uniprot:Q8I4R9
        Length = 717

 Score = 350 (128.3 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
 Identities = 80/218 (36%), Positives = 124/218 (56%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             ++ N  +  + +SRP LK +    +  PT IQ   IP+AL G+ I             F+
Sbjct:    83 IDMNCLWSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFV 142

Query:   147 LPILERLLY----KPRDDQ-----N-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS 196
             LPILERLL     K R +      N T+ L+L+PTREL +Q Y V R L ++ ++  +L 
Sbjct:   143 LPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVTITYSLF 202

Query:   197 VGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
              GG+++K QE   +K  DI + TPGR+LD L N+ S  ++ +E++V DEAD++L+  F  
Sbjct:   203 CGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKE 262

Query:   257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPV 294
             +  +I+ +C   +Q + FSAT+T  +  L + SL  PV
Sbjct:   263 ECLKILDVCKFKKQILFFSATLTSDIKQLANFSLKNPV 300

 Score = 43 (20.2 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query:   282 VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLREN 335
             VN+++S S    +++    + +++ NL+QEFV   NI + + Y    L+ L  N
Sbjct:   337 VNNIISNSF---LKISNKASFKISENLKQEFV---NIIQEK-YRKASLLYLCNN 383


>UNIPROTKB|Q8I4R9 [details] [associations]
            symbol:PFL2475w "DEAD/DEAH box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
            ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
            GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
            HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
            Uniprot:Q8I4R9
        Length = 717

 Score = 350 (128.3 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
 Identities = 80/218 (36%), Positives = 124/218 (56%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             ++ N  +  + +SRP LK +    +  PT IQ   IP+AL G+ I             F+
Sbjct:    83 IDMNCLWSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFV 142

Query:   147 LPILERLLY----KPRDDQ-----N-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS 196
             LPILERLL     K R +      N T+ L+L+PTREL +Q Y V R L ++ ++  +L 
Sbjct:   143 LPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVTITYSLF 202

Query:   197 VGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
              GG+++K QE   +K  DI + TPGR+LD L N+ S  ++ +E++V DEAD++L+  F  
Sbjct:   203 CGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKE 262

Query:   257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPV 294
             +  +I+ +C   +Q + FSAT+T  +  L + SL  PV
Sbjct:   263 ECLKILDVCKFKKQILFFSATLTSDIKQLANFSLKNPV 300

 Score = 43 (20.2 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query:   282 VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLREN 335
             VN+++S S    +++    + +++ NL+QEFV   NI + + Y    L+ L  N
Sbjct:   337 VNNIISNSF---LKISNKASFKISENLKQEFV---NIIQEK-YRKASLLYLCNN 383


>UNIPROTKB|E1BGI6 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0003714 "transcription corepressor activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
            GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
            IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
        Length = 877

 Score = 370 (135.3 bits), Expect = 5.1e-33, P = 5.1e-33
 Identities = 84/226 (37%), Positives = 128/226 (56%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIP+ L G+D+             F++
Sbjct:    93 KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLI 152

Query:   148 PILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             P+ ERL  K    Q   R L+L PTREL +Q  + T++L +FT ++ AL +GG +++ Q 
Sbjct:   153 PMFERL--KTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQF 210

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ H+    +  L  +E +V DEADR+ +  FA Q++EII    
Sbjct:   211 AALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLP 269

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
                QT+LFSAT+   + +     LT PV + +D + ++   L+  F
Sbjct:   270 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF 315


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 81/222 (36%), Positives = 121/222 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  ++L+  L+  +  L Y  PTPIQ   IP  L  +D+             F LPIL+
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:   152 RLLYKPRDDQNT---RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              L+   + D      R LVLVPTREL +QV Q   + A+ T + V ++ GG+ ++ Q++V
Sbjct:    62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
                  D++IATPGRLLDHL    + +L+ +  LV DEADRMLD  F  +++ +++     
Sbjct:   122 FNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             RQT+LFSAT+ D++       L  P R+ V   +  A  + Q
Sbjct:   181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQ 222


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 81/222 (36%), Positives = 121/222 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  ++L+  L+  +  L Y  PTPIQ   IP  L  +D+             F LPIL+
Sbjct:     2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61

Query:   152 RLLYKPRDDQNT---RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              L+   + D      R LVLVPTREL +QV Q   + A+ T + V ++ GG+ ++ Q++V
Sbjct:    62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
                  D++IATPGRLLDHL    + +L+ +  LV DEADRMLD  F  +++ +++     
Sbjct:   122 FNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             RQT+LFSAT+ D++       L  P R+ V   +  A  + Q
Sbjct:   181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQ 222


>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
            symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
            cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
            HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
            RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
            STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
            InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
            Uniprot:Q6DRL1
        Length = 653

 Score = 363 (132.8 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 90/234 (38%), Positives = 131/234 (55%)

Query:    89 ENSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E+ SF  ++  +S   LK +  + +   T IQ  TI   L GRD+             F+
Sbjct:   157 EDRSFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFL 216

Query:   147 LPILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
             +P +E L+YK    PR+   T V+VL PTREL +Q Y V ++L         L +GG   
Sbjct:   217 IPSIE-LIYKLKFMPRN--GTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNR 273

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
               +   L    +I++ATPGRLLDHL NTP F   +++ L++DEADR+L+  F  ++K+II
Sbjct:   274 SAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQII 333

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             +L  + RQ+MLFSAT T  V DL  +SL + P+ V VD+N + A    L Q +V
Sbjct:   334 KLLPKKRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYV 387


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 84/248 (33%), Positives = 131/248 (52%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F  + LS  LLKA+    Y  P+PIQA  IP  + GRD+             F LP+L
Sbjct:     6 TKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL 65

Query:   151 ERLLYKPRD---DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             +RL     +     N R L+L PTREL  Q+ +      ++ ++   +  GG+++  Q +
Sbjct:    66 QRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIA 125

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              LR+  D+++ATPGRLLD L+N  +   S +EV +LDEADRMLD  F   +K+++    +
Sbjct:   126 RLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPK 184

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVL 327
              RQ +LFSAT +  +  L    +  P+ + VD  +  A  + Q   +   +D+ R   VL
Sbjct:   185 DRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTA---VDKKRKPAVL 241

Query:   328 GLMLLREN 335
                L++EN
Sbjct:   242 -THLIKEN 248


>UNIPROTKB|Q47Z59 [details] [associations]
            symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
            "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 81/231 (35%), Positives = 124/231 (53%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F    L   L+  I  + +  PT IQ   IP A+ G D+             F++P L+R
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62

Query:   153 LLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L   +    ++ RV++L PTREL  QV+   R     T  +  L +GG     Q  VL+K
Sbjct:    63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQ 270
              P+ ++ATPGRL DHL     F L+ +E+L+LDEADRMLD  F+ ++ +I +    R RQ
Sbjct:   123 EPEFIVATPGRLADHL-TQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ 181

Query:   271 TMLFSATMTDA-VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             T+LFSAT+  A VN+  +  LT+P R+ ++  H   +++ + F    N+ +
Sbjct:   182 TLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQ 232


>TIGR_CMR|CPS_3215 [details] [associations]
            symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
            STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
            OMA:PKFIVAT ProtClustDB:CLSK869483
            BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
        Length = 448

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 81/231 (35%), Positives = 124/231 (53%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F    L   L+  I  + +  PT IQ   IP A+ G D+             F++P L+R
Sbjct:     3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62

Query:   153 LLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L   +    ++ RV++L PTREL  QV+   R     T  +  L +GG     Q  VL+K
Sbjct:    63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQ 270
              P+ ++ATPGRL DHL     F L+ +E+L+LDEADRMLD  F+ ++ +I +    R RQ
Sbjct:   123 EPEFIVATPGRLADHL-TQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ 181

Query:   271 TMLFSATMTDA-VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             T+LFSAT+  A VN+  +  LT+P R+ ++  H   +++ + F    N+ +
Sbjct:   182 TLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQ 232


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 89/250 (35%), Positives = 129/250 (51%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS P+L AI  L Y  PT IQ   IPV L G+DI             F+LP+LE
Sbjct:     2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61

Query:   152 RL--LYKPRDDQ----NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205
             +L   YK    +      R L+LVPTREL VQV     Q A++  +      GG++ + Q
Sbjct:    62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQ 121

Query:   206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
             +  L    DI++ATPGRLLD  H        ++++LVLDEADRMLD  F   + +II   
Sbjct:   122 KQRLIWGVDILVATPGRLLDMTHQRV-LHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180

Query:   266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYN 325
                RQ +LFSATM++ V  L   ++ +PV + +  +      + Q  V+   +D+     
Sbjct:   181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVT---VDKANKSA 237

Query:   326 VLGLMLLREN 335
             +L  ++  +N
Sbjct:   238 LLSHIITTQN 247


>WB|WBGene00022378 [details] [associations]
            symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
            OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
            GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
            NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
            SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
            WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
            Uniprot:Q688Z4
        Length = 871

 Score = 363 (132.8 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 87/245 (35%), Positives = 137/245 (55%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             + Q+ L   + KAI    +  PTPIQ  TIP  + G+D+             F++P+L++
Sbjct:    26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             L  K RD    R L++ PTREL +Q ++V ++L +FT +  A  VGG +++ Q S + + 
Sbjct:    86 L--KRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHEN 143

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
             PDI++ATPGRLL H+       LS ++ +V DEADR+ +  F  Q+ E ++    +RQT+
Sbjct:   144 PDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTL 202

Query:   273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM-- 330
             LFSAT+   + D     LT P+ V +D + +V+  L   F      DE +L+ +L L   
Sbjct:   203 LFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFC-MCRPDE-KLFALLHLCRR 260

Query:   331 LLREN 335
             + REN
Sbjct:   261 MDREN 265


>UNIPROTKB|Q8EGU0 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 83/209 (39%), Positives = 113/209 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F  + LS PLL AI    Y   T +Q   IP+AL+G+DI             F LP+LE+
Sbjct:     3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             L  KP D    R LV+ PTREL +QV    ++ +QF  ++     GG  +  Q   + + 
Sbjct:    63 LAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
              DI++ATPGRL D +    +  LS +  LV+DEADRMLD  F   ++++ RL +   QTM
Sbjct:   123 VDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181

Query:   273 LFSATMTDAVNDLVSVSLTRPVRVFVDNN 301
             LFSAT +DAV  L    L +P  V V  N
Sbjct:   182 LFSATYSDAVKQLSHKMLNQPQWVNVAEN 210


>TIGR_CMR|SO_1501 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 83/209 (39%), Positives = 113/209 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F  + LS PLL AI    Y   T +Q   IP+AL+G+DI             F LP+LE+
Sbjct:     3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             L  KP D    R LV+ PTREL +QV    ++ +QF  ++     GG  +  Q   + + 
Sbjct:    63 LAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
              DI++ATPGRL D +    +  LS +  LV+DEADRMLD  F   ++++ RL +   QTM
Sbjct:   123 VDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181

Query:   273 LFSATMTDAVNDLVSVSLTRPVRVFVDNN 301
             LFSAT +DAV  L    L +P  V V  N
Sbjct:   182 LFSATYSDAVKQLSHKMLNQPQWVNVAEN 210


>CGD|CAL0004182 [details] [associations]
            symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
            STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
            KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            Uniprot:Q5AF95
        Length = 765

 Score = 361 (132.1 bits), Expect = 3.4e-32, P = 3.4e-32
 Identities = 90/286 (31%), Positives = 151/286 (52%)

Query:    41 NIKNRQKLIGKKKQK--RLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNL 98
             N+K  +K+  K  +K  RL +E +L ++                D   V   S F  + +
Sbjct:     4 NLKKGKKVFNKSTRKINRLKEEEELAKLQERINNYDPKT-----DEASV---SQFSDLPI 55

Query:    99 SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLY-KP 157
             +   LK +    ++  T IQ  TIP+AL G D+             F++P++E L+  K 
Sbjct:    56 TENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESLIRNKI 115

Query:   158 RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVI 217
              +      L++ PTREL VQ+++V  ++ ++ +    L  GG +V+ ++  + +  +I++
Sbjct:   116 TEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSRM-NILV 174

Query:   218 ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
              TPGR+  HL+       S+++VLVLDEADR LD  F  Q+  I+     TRQT+LFSAT
Sbjct:   175 GTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSAT 234

Query:   278 MTDAVNDLVSVSLTRPVRVFVDNNHEVAL---NLRQEFVSFSNIDE 320
              +++VNDL  +SLT P ++ V ++ EV+    +L Q +V    +DE
Sbjct:   235 QSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVP-LDE 279


>UNIPROTKB|F8VRX4 [details] [associations]
            symbol:DDX54 "ATP-dependent RNA helicase DDX54"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
            ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
            ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
        Length = 208

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 80/192 (41%), Positives = 112/192 (58%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIPV L G+D+             F+L
Sbjct:    10 KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLL 69

Query:   148 PILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             P+ ERL  K    Q   R L+L PTREL +Q  + T++L +FT ++ AL +GG  ++ Q 
Sbjct:    70 PMFERL--KTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQF 127

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ H+    S  L  +E +V DEADR+ +  FA Q++EII    
Sbjct:   128 AALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP 186

Query:   267 RTRQTMLFSATM 278
                QT+LFSAT+
Sbjct:   187 GGHQTVLFSATL 198


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 80/219 (36%), Positives = 115/219 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F  + LS P+LKAI    Y  P+PIQ   IP  L G+D+             F LPILE 
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:   153 LLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L   P+   N  R L+L PTREL  Q+        +   ++ A+  GG+++  Q   + K
Sbjct:    63 LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI++ATPGRL+D L+N  +     +E+LVLDEADRMLD  F   + +I++L    RQ 
Sbjct:   123 GADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +LFSAT +  + +L    +  PV + V   +  A  + Q
Sbjct:   182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQ 220


>TIGR_CMR|CPS_4097 [details] [associations]
            symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
            "RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
            ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
            STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
            PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
            Uniprot:Q47WS0
        Length = 430

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/204 (38%), Positives = 111/204 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F Q +L   LL +I  + Y  PT IQ   IP A++G+D+             F+LPI + 
Sbjct:    15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74

Query:   153 LLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             LL  PR      RVL+L PTREL +Q+ + + QL + T ++  +  GG+       +L  
Sbjct:    75 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 134

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI++ATPGRLL+++ N   F   +IE+LVLDEADRMLD  F+  +  I+      +QT
Sbjct:   135 TTDILVATPGRLLEYIENE-QFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQT 193

Query:   272 MLFSATM-TDAVNDLVSVSLTRPV 294
             MLFSAT+ +  V       L  PV
Sbjct:   194 MLFSATLESPGVQLFAEEVLNEPV 217


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 80/219 (36%), Positives = 115/219 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F  + LS P+LKAI    Y  P+PIQ   IP  L G+D+             F LPILE 
Sbjct:     3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query:   153 LLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L   P+   N  R L+L PTREL  Q+        +   ++ A+  GG+++  Q   + K
Sbjct:    63 LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI++ATPGRL+D L+N  +     +E+LVLDEADRMLD  F   + +I++L    RQ 
Sbjct:   123 GADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +LFSAT +  + +L    +  PV + V   +  A  + Q
Sbjct:   182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQ 220


>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
            helicase, putative" species:5833 "Plasmodium falciparum"
            [GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
            RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
            EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
            EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
            Uniprot:C6KTE4
        Length = 601

 Score = 341 (125.1 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
 Identities = 82/246 (33%), Positives = 133/246 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP---I 149
             F ++N+   L K +  LN++  T IQA  IP  L G+DI             F++P   I
Sbjct:   150 FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINI 209

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             L  + + P++   T VL++ PTREL +Q+YQV + L ++      + +GG+    ++   
Sbjct:   210 LYNIKFLPKN--GTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKF 267

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
                 +I+IATPGRLLDH+ NT  F   ++  L++DEADR+L   F  ++  II+   + R
Sbjct:   268 IHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR 327

Query:   270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329
             QT LFSAT T  V  L+ +SL +P+ + V         L+Q    ++ +DE + + +L  
Sbjct:   328 QTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQ---GYALVDEDKRFLLL-F 383

Query:   330 MLLREN 335
               L++N
Sbjct:   384 TFLKKN 389

 Score = 38 (18.4 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query:    40 DNIKNRQK-LIGKKKQKRLAKE 60
             +N+K  +K  I KKK+K+  KE
Sbjct:    17 NNLKKTKKNSIIKKKKKKKKKE 38


>UNIPROTKB|C6KTE4 [details] [associations]
            symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
            ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
            GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
            ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
        Length = 601

 Score = 341 (125.1 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
 Identities = 82/246 (33%), Positives = 133/246 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP---I 149
             F ++N+   L K +  LN++  T IQA  IP  L G+DI             F++P   I
Sbjct:   150 FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINI 209

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             L  + + P++   T VL++ PTREL +Q+YQV + L ++      + +GG+    ++   
Sbjct:   210 LYNIKFLPKN--GTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKF 267

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
                 +I+IATPGRLLDH+ NT  F   ++  L++DEADR+L   F  ++  II+   + R
Sbjct:   268 IHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR 327

Query:   270 QTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGL 329
             QT LFSAT T  V  L+ +SL +P+ + V         L+Q    ++ +DE + + +L  
Sbjct:   328 QTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQ---GYALVDEDKRFLLL-F 383

Query:   330 MLLREN 335
               L++N
Sbjct:   384 TFLKKN 389

 Score = 38 (18.4 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query:    40 DNIKNRQK-LIGKKKQKRLAKE 60
             +N+K  +K  I KKK+K+  KE
Sbjct:    17 NNLKKTKKNSIIKKKKKKKKKE 38


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 82/225 (36%), Positives = 119/225 (52%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F ++NL+  +LKAI    Y  PTPIQA  IP AL GRD+             F LP++
Sbjct:     2 TKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
               L       +  R LVL PTREL  QV +      +   +  AL +GG+  K Q++++ 
Sbjct:    62 TLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALID 121

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             +  D++IATPGRLLDH        L+ ++++V+DEADRMLD  F   ++ I  L   TRQ
Sbjct:   122 RGVDVLIATPGRLLDHFERG-KLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQ 180

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315
             T+ FSATM   +  + +  L+ P R+ V      +  + Q  V F
Sbjct:   181 TLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLF 225


>POMBASE|SPAC1F7.02c [details] [associations]
            symbol:has1 "ATP-dependent RNA helicase Has1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
            GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
            ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
            GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
        Length = 578

 Score = 355 (130.0 bits), Expect = 5.1e-32, P = 5.1e-32
 Identities = 83/238 (34%), Positives = 131/238 (55%)

Query:    83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             +A    +   F  + LS  + KAI  + +   T IQ  +IP  L GRD+           
Sbjct:    81 NASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKT 140

Query:   143 XXFMLPILERLL---YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
               F++P +E L    +KPR+   T V+++ PTREL +Q++ V ++L ++      + +GG
Sbjct:   141 LAFLIPTIEMLYALKFKPRN--GTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGG 198

Query:   200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259
                + +   L K  ++++ATPGRLLDHL NT  F   ++  LV+DEADR+L+  F  +M+
Sbjct:   199 ANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMR 258

Query:   260 EIIRLC-SRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             +I+++  S  RQT+LFSAT T  V DL  +SL   P+ V VD+    +    L Q +V
Sbjct:   259 QIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYV 316


>UNIPROTKB|E2RFA3 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
            CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
            Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
            Uniprot:E2RFA3
        Length = 669

 Score = 357 (130.7 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 88/233 (37%), Positives = 131/233 (56%)

Query:    89 ENSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  ++  ++   LKAI  + +   T IQ  +I   L GRD+             F+
Sbjct:   174 EDTSFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 233

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L  +      L +GG    
Sbjct:   234 IPAVELIVKLKFMPRN--GTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRS 291

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +I++ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   292 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 351

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   352 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 404


>SGD|S000002189 [details] [associations]
            symbol:DBP10 "Putative ATP-dependent RNA helicase of the
            DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
            GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
            GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
            OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
            RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
            DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
            PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
            KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
            NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
            GO:GO:0000466 Uniprot:Q12389
        Length = 995

 Score = 361 (132.1 bits), Expect = 6.2e-32, P = 6.2e-32
 Identities = 86/241 (35%), Positives = 128/241 (53%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             +  SF    LS+ +L  I    +  PTPIQ  TIP+ L  RDI             F+LP
Sbjct:   135 KKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILP 194

Query:   149 ILERLLYKPRDDQ-NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
             ++E+L  K    +   R ++L P+REL +Q + V +  A+ T +   L  GG  ++ Q  
Sbjct:   195 MVEKL--KSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFG 252

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
             ++   PD++IATPGR L HL    +  L  +E +V DEADR+ +  F  Q+ E++     
Sbjct:   253 MMMTNPDVIIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPT 311

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID-EVRLYNV 326
             TRQT+LFSAT+ +++ D V   L  PV V +D   +V+ NL   F+S  N D E  L  +
Sbjct:   312 TRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYI 371

Query:   327 L 327
             L
Sbjct:   372 L 372


>UNIPROTKB|F1N533 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
            Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
        Length = 670

 Score = 356 (130.4 bits), Expect = 7.8e-32, P = 7.8e-32
 Identities = 91/233 (39%), Positives = 130/233 (55%)

Query:    89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  + NL +   LKAI  + +   T IQ  +I   L GRD+             F+
Sbjct:   175 EDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 234

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   235 IPAVELIVKLKFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 292

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   293 AEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 352

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   353 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 405


>UNIPROTKB|F1MSX0 [details] [associations]
            symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
            IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
        Length = 674

 Score = 356 (130.4 bits), Expect = 8.0e-32, P = 8.0e-32
 Identities = 91/233 (39%), Positives = 130/233 (55%)

Query:    89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  + NL +   LKAI  + +   T IQ  +I   L GRD+             F+
Sbjct:   179 EDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 238

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   239 IPAVELIVKLKFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 296

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   297 AEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 356

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   357 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 409


>WB|WBGene00015232 [details] [associations]
            symbol:B0511.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
            PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
            DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
            EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
            KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
            InParanoid:O61815 NextBio:877669 Uniprot:O61815
        Length = 544

 Score = 351 (128.6 bits), Expect = 9.6e-32, P = 9.6e-32
 Identities = 83/217 (38%), Positives = 130/217 (59%)

Query:   102 LLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQ 161
             LLKA+  L +   T IQA +I   L G+D+             F+LP +E LL+K    Q
Sbjct:    79 LLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIE-LLHKLNWKQ 137

Query:   162 N--TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIAT 219
             +  T V+++ PTREL +Q Y V  +L + +++   L +GG     ++  L K   I++AT
Sbjct:   138 HNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVAT 197

Query:   220 PGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMT 279
             PGRLLDHL NT +F + +++ L++DEADR+LD  F  +M++++R   + RQ+MLFSAT +
Sbjct:   198 PGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHS 257

Query:   280 DAVNDLVSVSL-TRPVRVFVDNNHEVAL--NLRQEFV 313
               V++LV ++L + PVRV V    E A    L+Q ++
Sbjct:   258 PKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYI 294


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 83/206 (40%), Positives = 110/206 (53%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F ++ L+  +LKA+ A  Y  PTP+QAA +P AL   D+             F+LP L+
Sbjct:     2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61

Query:   152 RLLYKPRDD-QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             RL   P+   +  RVLVL PTREL  QV    R    F  V     +GG+    Q  +L 
Sbjct:    62 RLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLS 121

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                D ++ATPGRL+D L    S  LS +E+LVLDEADRMLD  F+  +  I      TRQ
Sbjct:   122 APVDFIVATPGRLVDLLDRR-SLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQ 180

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRV 296
             T+LF+ATM  A+  L    L  P R+
Sbjct:   181 TLLFTATMDSAMARLAGRLLREPERI 206


>UNIPROTKB|F1SV16 [details] [associations]
            symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074980 EMBL:CU930036
            Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
        Length = 301

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 86/240 (35%), Positives = 130/240 (54%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             V E + F  + LS+  LK +    Y   T IQ  TI +AL G+D+             F+
Sbjct:    65 VNEITRFSDLPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 124

Query:   147 LPILERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
             +P+LE L Y+ +        VL++ PTREL  Q ++V R++ +       L +GG ++K 
Sbjct:   125 VPVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH 183

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             +   +    +I++ TPGRLL H+  T  F  +++++LVLDEADR+LD  FA  M  II  
Sbjct:   184 EAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIEN 242

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNI-DEVRL 323
               + RQT+LFSAT T +V DL  +SL  P  V+V   HE A   +  +V F  I D +++
Sbjct:   243 LPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV---HEKA---KYRYVLFETIFDSIKI 296


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 81/224 (36%), Positives = 121/224 (54%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             +SF ++ +  PL   +  L Y+ PTP+QAATIP  L GRD+             F LP+L
Sbjct:     9 ASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL 68

Query:   151 ERLLYKPRDDQNT---RVLVLVPTRELGVQVYQVTRQLAQ-FTS-VEVALSVGGLEVKVQ 205
             +RL      D++    R LVLVPTREL  QV       A  F   +++  + GG+ V +Q
Sbjct:    69 QRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQ 128

Query:   206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
                LR   D+++ATPGRLLD L +  +  L+ +   VLDEADRML   F  ++++++   
Sbjct:   129 MQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQVLAAL 187

Query:   266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLR 309
              R +QT+LFSAT  + V  L +  L +P+   + +  E  +  R
Sbjct:   188 PRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQR 231


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 81/224 (36%), Positives = 121/224 (54%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             +SF ++ +  PL   +  L Y+ PTP+QAATIP  L GRD+             F LP+L
Sbjct:     9 ASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL 68

Query:   151 ERLLYKPRDDQNT---RVLVLVPTRELGVQVYQVTRQLAQ-FTS-VEVALSVGGLEVKVQ 205
             +RL      D++    R LVLVPTREL  QV       A  F   +++  + GG+ V +Q
Sbjct:    69 QRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQ 128

Query:   206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
                LR   D+++ATPGRLLD L +  +  L+ +   VLDEADRML   F  ++++++   
Sbjct:   129 MQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQVLAAL 187

Query:   266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLR 309
              R +QT+LFSAT  + V  L +  L +P+   + +  E  +  R
Sbjct:   188 PRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQR 231


>UNIPROTKB|Q9NVP1 [details] [associations]
            symbol:DDX18 "ATP-dependent RNA helicase DDX18"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
            OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
            EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
            RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
            ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
            MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
            SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
            Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
            CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
            MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
            InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
            ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
            GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
            CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
            Uniprot:Q9NVP1
        Length = 670

 Score = 353 (129.3 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 90/233 (38%), Positives = 130/233 (55%)

Query:    89 ENSSFHQM-NL-SRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  + NL +   LKAI  + +   T IQ  +I   L GRD+             F+
Sbjct:   175 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 234

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   235 IPAVELIVKLRFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 292

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +I++ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   293 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 352

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   353 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 405


>ASPGD|ASPL0000054300 [details] [associations]
            symbol:AN0583 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
            STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
            KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
            OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
        Length = 936

 Score = 356 (130.4 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 83/235 (35%), Positives = 131/235 (55%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             V++   F  M L+  LLKAI    +  PTPIQ  TIPV +  +D+             F+
Sbjct:    87 VKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFV 146

Query:   147 LPILERLLYKPRDDQ-NTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205
             +P++E+L  K    +   R L+L P+REL +Q  +V ++L + T ++  L VGG  ++ Q
Sbjct:   147 IPMIEKL--KSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQ 204

Query:   206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
               ++   PDIVIATPGR L HL    +  LS I+ +V DEADR+ +  FA+Q+ EI+   
Sbjct:   205 FGMMAGNPDIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGL 263

Query:   266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
               TRQT+LFSAT+  ++ +     L  P  V +D   +++ +L+  F S  + ++
Sbjct:   264 PSTRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEK 318


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 83/247 (33%), Positives = 128/247 (51%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS  +L+A+    Y  PTPIQ   IP  L GRD+             F LP+L+
Sbjct:     2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query:   152 RLLYK-P--RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              L+ + P  +  +  R L+L PTREL  Q+ +  R  +++ ++   +  GG+ +  Q   
Sbjct:    62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             LR   D+++ATPGRLLD  H   +  L  +E+LVLDEADRMLD  F   ++ ++      
Sbjct:   122 LRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328
             RQ +LFSAT +D +  L    L  P+ + V   +  +  + Q  V F  +D+ R   +L 
Sbjct:   181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQH-VHF--VDKKRKRELLS 237

Query:   329 LMLLREN 335
              M+ + N
Sbjct:   238 HMIGKGN 244


>TAIR|locus:2173517 [details] [associations]
            symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
            "pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
            IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
            ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
            PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
            KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
            PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
            GermOnline:AT5G60990 Uniprot:Q8GY84
        Length = 456

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 85/237 (35%), Positives = 125/237 (52%)

Query:    88 EENS---SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXX 144
             EEN    +F ++ +   L+KA   L +  P+ IQA  +P AL G+D+             
Sbjct:     3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62

Query:   145 FMLPILERLL-Y----KP----RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
             F +PIL+ LL Y    +P    R D      VL PTREL +Q+ +    L    S+  A+
Sbjct:    63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122

Query:   196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
              VGG++   Q   L K P +++ATPGRL DH+ +T  FSL  ++ LVLDEADR+L+E F 
Sbjct:   123 LVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFE 182

Query:   256 SQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
               + +I+      R+T LFSATMT  V  L    L  PV++   + +     L+Q++
Sbjct:   183 KSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY 239


>ZFIN|ZDB-GENE-071022-2 [details] [associations]
            symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
            Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
            Uniprot:F1QMM9
        Length = 875

 Score = 355 (130.0 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 97/302 (32%), Positives = 149/302 (49%)

Query:    32 LPDDEMKHDNIKNRQKLIGKKKQK-RLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEEN 90
             + DD +K  N +  +K   K K K + +++ K+K+                      +E 
Sbjct:    12 ITDDPVK--NFEKWKKKYAKTKTKVKRSQKSKVKKRDWEVERENIKKLVDKYSEINPKEA 69

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
               F    LS+  LK +    Y  PT IQ  TI  AL GRD+             F++P+L
Sbjct:    70 VKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVL 129

Query:   151 ERLLYKPRDD--QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             E  LY+ +         L++ PTREL  Q ++V R++ +       L +GG ++K +   
Sbjct:   130 E-CLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEK 188

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             + +  +I+I TPGRLL H+  T +F  SD+ +LVLDEADR+LD  FA  +  I+    ++
Sbjct:   189 IHRT-NIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKS 247

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL--NLRQEFVSFSNIDEVR-LYN 325
             RQT+LFSAT T +V DL  +SL  P  V+V    + +    L Q +V      +V  LY+
Sbjct:   248 RQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYS 307

Query:   326 VL 327
              L
Sbjct:   308 FL 309


>DICTYBASE|DDB_G0280147 [details] [associations]
            symbol:ddx47 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
            EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
            EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
            Uniprot:Q54VT4
        Length = 546

 Score = 348 (127.6 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 80/233 (34%), Positives = 119/233 (51%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             EN +F  + +   ++ A   L +  P  IQ  +IP AL GRDI             F++P
Sbjct:   117 ENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIP 176

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             +L++LL  P   Q    L L PTREL  Q+      +     V+  + VGG++   Q   
Sbjct:   177 VLQKLLEAP---QGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLA 233

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L K P +V+ +PGR+L HL +T  F+L  I+  ++DEADR+    F  ++  I+++  + 
Sbjct:   234 LAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKE 293

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQE--FVSFSNID 319
             R T LFSATMT  V  L   SL  PV+V V + ++    L Q+  FV F   D
Sbjct:   294 RNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKD 346


>UNIPROTKB|F1NA53 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
            IPI:IPI00684751 ProteinModelPortal:F1NA53
            Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
        Length = 402

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 78/206 (37%), Positives = 120/206 (58%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ L+  L++    +    PTP+QA+ IP  L GRD              F+LP+L
Sbjct:     2 AAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             + L     D      LVL PTREL  Q+ +  R L +   ++  + VGGL++  Q   L 
Sbjct:    62 QVL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +FSL  ++ LVLDEADR+L++    F + ++ I+     
Sbjct:   119 RKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPA 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD +N+L S+++ RP
Sbjct:   179 RRQTLLFSATLTDTLNELKSLAMNRP 204


>UNIPROTKB|F1NYX0 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
            EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
            ArrayExpress:F1NYX0 Uniprot:F1NYX0
        Length = 482

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 78/206 (37%), Positives = 120/206 (58%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ L+  L++    +    PTP+QA+ IP  L GRD              F+LP+L
Sbjct:     5 AAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL 64

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             + L     D      LVL PTREL  Q+ +  R L +   ++  + VGGL++  Q   L 
Sbjct:    65 QVL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELS 121

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +FSL  ++ LVLDEADR+L++    F + ++ I+     
Sbjct:   122 RKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPA 181

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD +N+L S+++ RP
Sbjct:   182 RRQTLLFSATLTDTLNELKSLAMNRP 207


>UNIPROTKB|Q8EDC4 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 79/230 (34%), Positives = 123/230 (53%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F   +L + LL+++  +    PT IQ   +P+AL G+D+             F+LP L+R
Sbjct:     3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query:   153 LLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             ++  +    ++ RVL+L+PTREL  QVY   R L   T  +    +GG     Q   L K
Sbjct:    63 VISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQ 270
              P  ++ATPGR+ DHL     F L+ +E+L+LDEADRMLD  FA Q+K I      + RQ
Sbjct:   123 EPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQ 181

Query:   271 TMLFSATMTDA-VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319
             T++FSAT+  + +N++ +  L  P+ V +   H    ++ Q      ++D
Sbjct:   182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD 231


>TIGR_CMR|SO_2838 [details] [associations]
            symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
            GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
            Uniprot:Q8EDC4
        Length = 449

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 79/230 (34%), Positives = 123/230 (53%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F   +L + LL+++  +    PT IQ   +P+AL G+D+             F+LP L+R
Sbjct:     3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62

Query:   153 LLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             ++  +    ++ RVL+L+PTREL  QVY   R L   T  +    +GG     Q   L K
Sbjct:    63 VISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS-RTRQ 270
              P  ++ATPGR+ DHL     F L+ +E+L+LDEADRMLD  FA Q+K I      + RQ
Sbjct:   123 EPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQ 181

Query:   271 TMLFSATMTDA-VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319
             T++FSAT+  + +N++ +  L  P+ V +   H    ++ Q      ++D
Sbjct:   182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD 231


>UNIPROTKB|I3L840 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000025310 Uniprot:I3L840
        Length = 667

 Score = 350 (128.3 bits), Expect = 3.5e-31, P = 3.5e-31
 Identities = 88/233 (37%), Positives = 129/233 (55%)

Query:    89 ENSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  +   ++   L+AI  + +   T IQ  +I   L GRD+             F+
Sbjct:   172 EDTSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 231

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   232 IPAVELIVKLRFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 289

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   290 AEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 349

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   350 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 402


>UNIPROTKB|F1RY13 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
        Length = 671

 Score = 350 (128.3 bits), Expect = 3.5e-31, P = 3.5e-31
 Identities = 88/233 (37%), Positives = 129/233 (55%)

Query:    89 ENSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  +   ++   L+AI  + +   T IQ  +I   L GRD+             F+
Sbjct:   176 EDTSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 235

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   236 IPAVELIVKLRFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 293

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   294 AEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 353

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   354 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 406


>UNIPROTKB|A4RGU2 [details] [associations]
            symbol:DBP4 "ATP-dependent RNA helicase DBP4"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
            RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
            EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
            Uniprot:A4RGU2
        Length = 798

 Score = 352 (129.0 bits), Expect = 3.5e-31, P = 3.5e-31
 Identities = 82/226 (36%), Positives = 127/226 (56%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F ++ LS P  K +   ++   T IQA  IP+AL GRDI             F++P+LE
Sbjct:    50 AFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE 109

Query:   152 RLLYKPRDDQNTRV--LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             +L Y+ +  Q  ++  LVL PTREL VQ +QV R++ +       L +GG  V+ +   L
Sbjct:   110 KL-YREQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAEAL 168

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
              +  +I+I TPGR+L HL  T  F + ++++LVLDEADR++D  F   +  +++    TR
Sbjct:   169 SRM-NILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTR 227

Query:   270 QTMLFSATMTDAVNDLVSVSLTRP--VRVFVDNNHEVALNLRQEFV 313
             QT+LFSAT +  V+DL  +SL  P  V V  +        L+Q ++
Sbjct:   228 QTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYI 273


>FB|FBgn0052344 [details] [associations]
            symbol:CG32344 species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
            GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
            GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
            RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
            STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
            KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
            InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
            NextBio:847633 Uniprot:Q8SY39
        Length = 827

 Score = 352 (129.0 bits), Expect = 3.9e-31, P = 3.9e-31
 Identities = 75/211 (35%), Positives = 113/211 (53%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             ++  F  M L   L+K I    Y  PTPIQ  TIP+ L GRD+             F++P
Sbjct:    37 KSGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIP 96

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             + E+L  +    +  R L+L PTREL VQ Y+  ++L +F  ++  L +GG  +  Q S 
Sbjct:    97 LFEKL-QRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSA 155

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             +  CPD+++ATPGR L HL       L+ IE +V DEADR+ +  F  Q+ E +     +
Sbjct:   156 IHTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSS 214

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVD 299
             RQT++FSAT+   + +     L  PV + +D
Sbjct:   215 RQTVMFSATLPKLLVEFARAGLNDPVLIRLD 245


>UNIPROTKB|I3L7B7 [details] [associations]
            symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00680000100037 EMBL:CU406995
            Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
        Length = 696

 Score = 350 (128.3 bits), Expect = 4.0e-31, P = 4.0e-31
 Identities = 88/233 (37%), Positives = 129/233 (55%)

Query:    89 ENSSFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             E++SF  +   ++   L+AI  + +   T IQ  +I   L GRD+             F+
Sbjct:   201 EDTSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 260

Query:   147 LPILE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVK 203
             +P +E   +L + PR+   T VL+L PTREL +Q + V ++L         L +GG    
Sbjct:   261 IPAVELIVKLRFMPRN--GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 318

Query:   204 VQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
              +   L    +IV+ATPGRLLDH+ NTP F   +++ LV+DEADR+LD  F  ++K+II+
Sbjct:   319 AEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 378

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVAL--NLRQEFV 313
             L    RQTMLFSAT T  V DL  +SL + P+ V VD++   A    L Q +V
Sbjct:   379 LLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYV 431


>UNIPROTKB|Q9KNA4 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
            PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
            DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
            Uniprot:Q9KNA4
        Length = 452

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 86/236 (36%), Positives = 118/236 (50%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             +E    F  + L   LLK +   N+   T IQ   IP+ + GRD+             F+
Sbjct:     1 MESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFV 60

Query:   147 LPILERLLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205
             LP+L + L  K    ++ R L+LVPTREL  QVY   R +    S    L  GG     Q
Sbjct:    61 LPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQ 120

Query:   206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
                L + P  ++ATPGRL DHL +   F L  +E LVLDEADRMLD  FA +++ I    
Sbjct:   121 VKALARGPRFIVATPGRLADHLDHRSLF-LEGLETLVLDEADRMLDLGFAKELRRIHNAA 179

Query:   266 S-RTRQTMLFSATMTDA-VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319
               R RQT++FSAT+  A VND+    L  P R+ +    E   ++ Q F    ++D
Sbjct:   180 KHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLD 235


>TIGR_CMR|VC_A0061 [details] [associations]
            symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
            ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
            ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
            KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
        Length = 452

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 86/236 (36%), Positives = 118/236 (50%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             +E    F  + L   LLK +   N+   T IQ   IP+ + GRD+             F+
Sbjct:     1 MESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFV 60

Query:   147 LPILERLLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQ 205
             LP+L + L  K    ++ R L+LVPTREL  QVY   R +    S    L  GG     Q
Sbjct:    61 LPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQ 120

Query:   206 ESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
                L + P  ++ATPGRL DHL +   F L  +E LVLDEADRMLD  FA +++ I    
Sbjct:   121 VKALARGPRFIVATPGRLADHLDHRSLF-LEGLETLVLDEADRMLDLGFAKELRRIHNAA 179

Query:   266 S-RTRQTMLFSATMTDA-VNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319
               R RQT++FSAT+  A VND+    L  P R+ +    E   ++ Q F    ++D
Sbjct:   180 KHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLD 235


>UNIPROTKB|E9PIF2 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
            EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
            ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
            UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
        Length = 835

 Score = 351 (128.6 bits), Expect = 5.1e-31, P = 5.1e-31
 Identities = 93/287 (32%), Positives = 140/287 (48%)

Query:    31 ALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEEN 90
             A PD     +  K +      KK K+L K+  LK+                 +   V E 
Sbjct:    12 ARPDPVRSFNRWKKKHSHRQNKK-KQLRKQ--LKKPEWQVERESISRLMQNYEKINVNEI 68

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F    LS+  LK +    Y   T IQ  TI +AL G+D+             F++P+L
Sbjct:    69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128

Query:   151 ERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             E L Y+ +        VL++ PTREL  Q ++V R++ +       L +GG ++K +   
Sbjct:   129 EAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER 187

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             +    +I++ TPGRLL H+  T SF  +D+++LVLDEADR+LD  FA  M  +I    + 
Sbjct:   188 INNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK 246

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFV 313
             RQT+LFSAT T +V DL  +SL  P  V+V     +     L Q ++
Sbjct:   247 RQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYI 293


>UNIPROTKB|P21507 [details] [associations]
            symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
            evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
            OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
            PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
            ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
            MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
            EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
            KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
            EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
            BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
            Genevestigator:P21507 Uniprot:P21507
        Length = 444

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 81/208 (38%), Positives = 114/208 (54%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ L   LL+A+    +  PT IQAA IP AL GRD+             ++LP L
Sbjct:     4 TTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPAL 63

Query:   151 ERLLYKPRDDQNT-RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             + LL  PR      R+L+L PTREL +QV    R+LA+ T +++A   GG+       V 
Sbjct:    64 QHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVF 123

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
              +  DIV+AT GRLL ++    +F    +E L+LDEADRMLD  FA  ++ I       +
Sbjct:   124 SENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK 182

Query:   270 QTMLFSATMT-DAVNDLVSVSLTRPVRV 296
             QT+LFSAT+  DA+ D     L  PV V
Sbjct:   183 QTLLFSATLEGDAIQDFAERLLEDPVEV 210


>UNIPROTKB|Q13206 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
            EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
            EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
            PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
            IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
            SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
            Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
            GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
            neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
            ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
            ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
            Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
        Length = 875

 Score = 351 (128.6 bits), Expect = 5.6e-31, P = 5.6e-31
 Identities = 93/287 (32%), Positives = 140/287 (48%)

Query:    31 ALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEEN 90
             A PD     +  K +      KK K+L K+  LK+                 +   V E 
Sbjct:    12 ARPDPVRSFNRWKKKHSHRQNKK-KQLRKQ--LKKPEWQVERESISRLMQNYEKINVNEI 68

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F    LS+  LK +    Y   T IQ  TI +AL G+D+             F++P+L
Sbjct:    69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128

Query:   151 ERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             E L Y+ +        VL++ PTREL  Q ++V R++ +       L +GG ++K +   
Sbjct:   129 EAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER 187

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             +    +I++ TPGRLL H+  T SF  +D+++LVLDEADR+LD  FA  M  +I    + 
Sbjct:   188 INNI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK 246

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFV 313
             RQT+LFSAT T +V DL  +SL  P  V+V     +     L Q ++
Sbjct:   247 RQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYI 293


>UNIPROTKB|Q73EU1 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
            RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
            DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
            GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
            Uniprot:Q73EU1
        Length = 525

 Score = 340 (124.7 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>UNIPROTKB|A0R8U6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
            ProteinModelPortal:A0R8U6 STRING:A0R8U6
            EnsemblBacteria:EBBACT00000069056 GeneID:4546566
            GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
        Length = 528

 Score = 340 (124.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>UNIPROTKB|Q63GX5 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
            "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
            ProteinModelPortal:Q63GX5 STRING:Q63GX5
            EnsemblBacteria:EBBACT00000041470 GeneID:3022962
            GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
            BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
        Length = 528

 Score = 340 (124.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>UNIPROTKB|Q6HPE6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:281309 "Bacillus thuringiensis serovar konkukian str.
            97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
            ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
            GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
            PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
        Length = 528

 Score = 340 (124.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>UNIPROTKB|Q81VG0 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 340 (124.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>TIGR_CMR|BA_0247 [details] [associations]
            symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 340 (124.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>SGD|S000003570 [details] [associations]
            symbol:HCA4 "DEAD box RNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
            [GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA;IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
            GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
            PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
            DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
            PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
            KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
            NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
            Uniprot:P20448
        Length = 770

 Score = 346 (126.9 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 75/209 (35%), Positives = 120/209 (57%)

Query:    85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXX 144
             P + +   F  + +S P LK +   ++I  T IQA +IPV+L G D+             
Sbjct:    35 PKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLA 94

Query:   145 FMLPILERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
             F++P++E+L Y+ +  +      L++ PTREL +Q+Y+V  ++   TS    L +GG +V
Sbjct:    95 FLVPVIEKL-YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDV 153

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
             K +   + +  +I+I TPGR+L HL      + S++++LVLDEADR LD  F   +  I+
Sbjct:   154 KFELERISRI-NILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIV 212

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLT 291
                S +RQT+LFSAT + +V DL  +SLT
Sbjct:   213 STLSPSRQTLLFSATQSQSVADLARLSLT 241


>UNIPROTKB|Q81IT9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
            STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
            GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
            PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
        Length = 533

 Score = 340 (124.7 bits), Expect = 1.5e-30, P = 1.5e-30
 Identities = 79/241 (32%), Positives = 133/241 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS  LL+++ ++ +   TPIQA TIP AL G+DI             F LP+L
Sbjct:     2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +++       ++ + +V+ PTREL +QV +   ++ +   V +    GG ++  Q   L+
Sbjct:    62 DKV---DTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P I++ TPGR+LDH+ N  +  L ++E +VLDEAD ML+  F   ++ I+     T Q
Sbjct:   119 KHPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +T P  + V    EV +   Q+F  +  + E + ++VL  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQF--YLEVQEKKKFDVLTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>CGD|CAL0003464 [details] [associations]
            symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
            EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
            RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
            KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
        Length = 908

 Score = 346 (126.9 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 78/237 (32%), Positives = 126/237 (53%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF    L++ +L  I    Y  PTPIQ  TIP+ + GRD+             F+LP++E
Sbjct:   100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIE 159

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             RL  K R     R ++L P+REL +Q Y+  ++ +  T+++  + +GG  ++   S +  
Sbjct:   160 RL--KSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMT 217

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
              PDI++ TPGR L HL     + L  ++ +V DEADR+ +  FA Q+ E++      RQ+
Sbjct:   218 KPDIIVCTPGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQS 276

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQE-FVSFSNIDEVRLYNVL 327
             +LFSAT+  ++ D     LT PV V +D   +++  L+   F +  N  E  L  +L
Sbjct:   277 LLFSATLPRSLVDFAKAGLTNPVLVRLDAESKISDQLQMAYFTTKKNEREANLLYIL 333


>FB|FBgn0030855 [details] [associations]
            symbol:CG5800 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0007526 "larval somatic muscle development"
            evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
            GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            KO:K14776 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
            RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
            EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
            UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
            OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
        Length = 826

 Score = 345 (126.5 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 82/250 (32%), Positives = 126/250 (50%)

Query:    50 GKKKQKRLAKE-GKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNLSRPLLKAIGA 108
             G   QKR  +E  K +                  DA  +++   F Q  LS+   KA+  
Sbjct:    33 GDNSQKRPRQEINKSRLAATEAEIQDLKTKYAEIDATAIKK---FAQFPLSKKTQKALAE 89

Query:   109 LNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKP--RDDQNTRVL 166
               +++PT +Q  +I  AL G+D+             F++P+LE L      R D     +
Sbjct:    90 SKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTD-GVGAI 148

Query:   167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDH 226
             ++ PTREL  Q+++  +++ +       L +GG  +K + + + +C +I+I TPGRLL H
Sbjct:   149 IISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQC-NILICTPGRLLQH 207

Query:   227 LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV 286
             +   P F+ S +E+LVLDEADR LD  F   +  II      RQT+LFSAT T+ V DL 
Sbjct:   208 MDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLA 267

Query:   287 SVSLTRPVRV 296
              ++L  PV V
Sbjct:   268 RLNLKDPVYV 277


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 79/224 (35%), Positives = 121/224 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF Q+ LS  L++ +  L Y  PT IQ   IPV L GRD+             F+LPILE
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

Query:   152 RLLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +L   + +  +  R L+LVPTREL +QV +   Q  + T ++     GG++ + Q+  L 
Sbjct:    62 KLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 121

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                D+++ATPGRL+D L+   +    +IE++VLDEADRMLD  F   + +II       Q
Sbjct:   122 DGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
              +LFSAT++  V +L   ++  P  + +  N     N+ Q  ++
Sbjct:   181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLIT 224


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 79/224 (35%), Positives = 121/224 (54%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF Q+ LS  L++ +  L Y  PT IQ   IPV L GRD+             F+LPILE
Sbjct:     2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61

Query:   152 RLLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +L   + +  +  R L+LVPTREL +QV +   Q  + T ++     GG++ + Q+  L 
Sbjct:    62 KLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 121

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                D+++ATPGRL+D L+   +    +IE++VLDEADRMLD  F   + +II       Q
Sbjct:   122 DGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVS 314
              +LFSAT++  V +L   ++  P  + +  N     N+ Q  ++
Sbjct:   181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLIT 224


>UNIPROTKB|Q8EE19 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 79/244 (32%), Positives = 125/244 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F Q+ L   L+KA+  L Y  PTPIQ   IP  L G+++             F+LP+L R
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62

Query:   153 LLYKPR-DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
                 P+   +  R ++L PTREL +QV Q   Q A++  +      GG++   Q+  L +
Sbjct:    63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               D+++ATPGRLLD ++   +    ++ VLVLDEADRMLD  F   +  II      RQ 
Sbjct:   123 GVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLML 331
             +LFSAT++  V  L   ++   + + +   +  +  + Q   +   +D+ R   +L   L
Sbjct:   182 LLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTT---VDKDRKSALLS-HL 237

Query:   332 LREN 335
             ++EN
Sbjct:   238 IKEN 241


>TIGR_CMR|SO_2571 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 79/244 (32%), Positives = 125/244 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F Q+ L   L+KA+  L Y  PTPIQ   IP  L G+++             F+LP+L R
Sbjct:     3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62

Query:   153 LLYKPR-DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
                 P+   +  R ++L PTREL +QV Q   Q A++  +      GG++   Q+  L +
Sbjct:    63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               D+++ATPGRLLD ++   +    ++ VLVLDEADRMLD  F   +  II      RQ 
Sbjct:   123 GVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLML 331
             +LFSAT++  V  L   ++   + + +   +  +  + Q   +   +D+ R   +L   L
Sbjct:   182 LLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTT---VDKDRKSALLS-HL 237

Query:   332 LREN 335
             ++EN
Sbjct:   238 IKEN 241


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 337 (123.7 bits), Expect = 7.1e-30, P = 7.1e-30
 Identities = 84/214 (39%), Positives = 110/214 (51%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS  L+ AI A  Y  PTP+Q   IP  L GRD+             F LPILE
Sbjct:     2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:   152 RLLYKPRDDQNTR-------VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
             RL      D++ R       VLVL PTREL  QV+   +  A+      A   GG+ +  
Sbjct:    62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             Q   + +  D+++A PGRLLD L    S  LS +E+LVLDEADRMLD  F   +K+++  
Sbjct:   122 QVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
                 RQ +LFSAT +  + DL    L  P R+ V
Sbjct:   181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEV 214


>UNIPROTKB|Q08DT0 [details] [associations]
            symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
            OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
            EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
            EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
            EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
            EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
            RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
            Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
            InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
        Length = 876

 Score = 340 (124.7 bits), Expect = 8.6e-30, P = 8.6e-30
 Identities = 90/287 (31%), Positives = 141/287 (49%)

Query:    31 ALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEEN 90
             A PD     +  K + +   K+ QK+  ++ +LK+                 +   V E 
Sbjct:    12 ARPDPVRSFNRWKKKHR--HKQSQKKQLRK-QLKKPEWQVEREVISRLMQNYEKINVNEI 68

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F    LS+  LK +    Y   T IQ  TI +AL G+D+             F++P+L
Sbjct:    69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128

Query:   151 ERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             E L Y+ +        VL++ PTREL  Q ++V R++ +       L +GG ++K +   
Sbjct:   129 EAL-YRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER 187

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             +    +I++ TPGRLL H+  T  F  +++++LVLDEADR+LD  FA  M  II    + 
Sbjct:   188 INNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKK 246

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFV 313
             RQT+LFSAT T +V DL  +SL  P  V+V     +     L Q ++
Sbjct:   247 RQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYI 293


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 336 (123.3 bits), Expect = 9.3e-30, P = 9.3e-30
 Identities = 83/214 (38%), Positives = 112/214 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  + LS  L++AI A  Y  PTP+Q   IP  L GRD+             F LPILE
Sbjct:     2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:   152 RLLYKPRDDQNTR-------VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
             RL      D++ R       VLVL PTREL  QV++  +  A+      A   GG+ +  
Sbjct:    62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNP 121

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             Q   + +  D+++A PGRLLD L    S  LS +E+LVLDEADRMLD  F   +K+++  
Sbjct:   122 QVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
                 RQ +LFSAT ++ +  L    L  P R+ V
Sbjct:   181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEV 214


>UNIPROTKB|O00148 [details] [associations]
            symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006406 "mRNA export from
            nucleus" evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
            GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:U90426 EMBL:AK026614 EMBL:BC001009
            IPI:IPI00940237 RefSeq:NP_005795.2 UniGene:Hs.311609
            ProteinModelPortal:O00148 SMR:O00148 IntAct:O00148
            MINT:MINT-1035991 STRING:O00148 PhosphoSite:O00148 PaxDb:O00148
            PeptideAtlas:O00148 PRIDE:O00148 DNASU:10212
            Ensembl:ENST00000242776 GeneID:10212 KEGG:hsa:10212 UCSC:uc002myo.3
            CTD:10212 GeneCards:GC19M014521 HGNC:HGNC:17821 neXtProt:NX_O00148
            PharmGKB:PA27226 HOVERGEN:HBG107334 InParanoid:O00148 KO:K13182
            OrthoDB:EOG4XSKPX PhylomeDB:O00148 ChiTaRS:DDX39A GenomeRNAi:10212
            NextBio:38664 ArrayExpress:O00148 Bgee:O00148 CleanEx:HS_DDX39
            Genevestigator:O00148 GermOnline:ENSG00000123136 Uniprot:O00148
        Length = 427

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 82/246 (33%), Positives = 142/246 (57%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q T VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  + N  SFSL +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKKNCPHVVVGTPGRILALVRNR-SFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>UNIPROTKB|Q8N5M0 [details] [associations]
            symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
            Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:CH471106
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            UniGene:Hs.311609 HGNC:HGNC:17821 ChiTaRS:DDX39A EMBL:AC008569
            HOVERGEN:HBG072062 EMBL:BC032128 IPI:IPI00166874 SMR:Q8N5M0
            IntAct:Q8N5M0 STRING:Q8N5M0 Ensembl:ENST00000324340 Uniprot:Q8N5M0
        Length = 322

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 82/246 (33%), Positives = 142/246 (57%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q T VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  + N  SFSL +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKKNCPHVVVGTPGRILALVRNR-SFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>UNIPROTKB|E2RC35 [details] [associations]
            symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
            CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
            Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
            Uniprot:E2RC35
        Length = 871

 Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 86/273 (31%), Positives = 137/273 (50%)

Query:    45 RQKLIGKKKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNLSRPLLK 104
             ++K   K+ QK+  ++ +LK+                 +   V E + F    LS+  LK
Sbjct:    24 KKKHSHKQSQKKQLRK-QLKKPEWQVEREAISRLTQNYEKINVNEITRFSDFPLSKKTLK 82

Query:   105 AIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPR--DDQN 162
              +    Y   T IQ  TI +AL G+D+             F++P+LE L Y+ +      
Sbjct:    83 GLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEAL-YRLQWTSTDG 141

Query:   163 TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGR 222
               VL++ PTREL  Q ++V R++ +       L +GG ++K +   +    +I++ TPGR
Sbjct:   142 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILVCTPGR 200

Query:   223 LLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAV 282
             LL H+  T  F  +++++LVLDEADR+LD  FA  M  II    + RQT+LFSAT T +V
Sbjct:   201 LLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSV 260

Query:   283 NDLVSVSLTRPVRVFVDNN--HEVALNLRQEFV 313
              DL  +SL  P  ++V     +     L Q ++
Sbjct:   261 KDLARLSLKNPEYIWVHEKAKYSTPATLEQNYI 293


>UNIPROTKB|P96614 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI] [GO:0010501 "RNA secondary
            structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
            GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
            EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
            ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
            EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
            PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
            GO:GO:0010501 Uniprot:P96614
        Length = 494

 Score = 330 (121.2 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 76/240 (31%), Positives = 127/240 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F   NLS  L+KAI  + +   TPIQA TIP+ L  +D+             F +P++E
Sbjct:     4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             ++   P +  N + +V+ PTREL +QV +   ++ Q    +V    GG ++  Q   L+K
Sbjct:    64 KI--NP-ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK 120

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
              P+I++ TPGRLLDH+ N  +  L+++  +V+DEAD ML+  F   ++ I+       QT
Sbjct:   121 NPNIIVGTPGRLLDHI-NRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLML 331
             +LFSATM   +  +    +T P  V V        N++Q ++    + E + ++ L  +L
Sbjct:   180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLE---VQERKKFDTLTRLL 236


>DICTYBASE|DDB_G0270396 [details] [associations]
            symbol:ddx49 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
            GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
            RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
            PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
            KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
        Length = 508

 Score = 331 (121.6 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 80/227 (35%), Positives = 123/227 (54%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             + +F ++ L+  L+     L +  P+ IQA TIP  L GRDI             F +PI
Sbjct:     3 DKTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPI 62

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
             L +L     D      ++L PTREL VQ+ +    +    +V  ++ +GG++   Q  +L
Sbjct:    63 LNQL---SEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALIL 119

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS--R 267
              K P I++ATPGRL  HL+N    +L   + LVLDEADR+L E F  ++  I+       
Sbjct:   120 DKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPE 179

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN-HEVALNLRQEFV 313
              RQT+LFSATMT  +  L S++L +P  +F DN+ ++    L+QE++
Sbjct:   180 KRQTLLFSATMTKNLTKLDSIALNKPF-IFEDNSKYDTVDTLKQEYI 225


>FB|FBgn0025140 [details] [associations]
            symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
            [GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
            evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
            EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
            UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
            DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
            EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
            KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
            GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
            PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
            Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
        Length = 680

 Score = 336 (123.3 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 88/290 (30%), Positives = 149/290 (51%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLK--QVXXXXXXXXXXXXXXXXDAPPVEENS 91
             DD+ + D  ++ ++ +  KK K L  + K +  +                 D    ++ S
Sbjct:   129 DDDQQED--EDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRS 186

Query:    92 SFHQMN--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
              F  +   +S   L+AI  + +   T IQ+ ++   L GRD+             F++P 
Sbjct:   187 -FASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 245

Query:   150 LE---RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             +E   +L + PR+   T V+++ PTREL +Q + V ++L         L +GG   +V+ 
Sbjct:   246 VELINKLRFMPRN--GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVES 303

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
               L K  +I++ATPGRLLDHL N+P F   +++ L++DE DR+L+  F  ++K+II L  
Sbjct:   304 EKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP 363

Query:   267 RTRQTMLFSATMTDAVNDLVSVSL-TRPVRVFVDNNHEVAL--NLRQEFV 313
             + RQTMLFSAT T  +  L  ++L + P+ V V +N + A    L Q ++
Sbjct:   364 KRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYI 413


>UNIPROTKB|F1S7D9 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
            RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
            GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
        Length = 483

 Score = 328 (120.5 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 76/206 (36%), Positives = 114/206 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F ++ LS  L++    L    PTP+Q   IP  L GRD              F+LPIL
Sbjct:     2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++L     D      LVL PTREL  Q+ +  R L +   ++  + VGG+++  Q   L 
Sbjct:    62 QKL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +FS+  I  LV+DEADR+L++    F   ++ I+     
Sbjct:   119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPA 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD + +L S++  +P
Sbjct:   179 RRQTLLFSATLTDTLRELQSLATNQP 204


>UNIPROTKB|E2QSR5 [details] [associations]
            symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
        Length = 912

 Score = 338 (124.0 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 81/226 (35%), Positives = 123/226 (54%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +++  F  M LS P+ K I    Y  PTPIQ  TIPV L G+D+             F++
Sbjct:    93 KKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLI 152

Query:   148 PILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             P+ ERL  K    Q   R L+L PTREL +Q  + T++L +FT +  AL +GG +++ Q 
Sbjct:   153 PMFERL--KTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQF 210

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L + PDI+IATPGRL+ H+    +  L  +E +  D  D + +  FA Q++EII    
Sbjct:   211 AALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYV--DSIDWLFEMGFAEQLQEIIGRLP 267

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
                QT+LFSAT+   + +     LT PV + +D + ++   L+  F
Sbjct:   268 GGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSF 313


>RGD|1308990 [details] [associations]
            symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
            IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
            Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
            UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
        Length = 874

 Score = 337 (123.7 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 81/231 (35%), Positives = 122/231 (52%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             V E + F    LS+  LK +    Y   T IQ  TI +AL G+D+             F+
Sbjct:    65 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 124

Query:   147 LPILERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
             +P+LE L Y+ +        VL++ PTREL  Q ++V R++ +       L +GG ++K 
Sbjct:   125 VPVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH 183

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             +   +    +I++ TPGRLL H+  T  F  +++++LVLDEADR+LD  FA  M  II  
Sbjct:   184 EAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIEN 242

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFV 313
               + RQT+LFSAT T +V DL  +SL  P  V+V     +     L Q ++
Sbjct:   243 LPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI 293


>MGI|MGI:1924841 [details] [associations]
            symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
            OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
            IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
            ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
            PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
            Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
            UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
            CleanEx:MM_DDX10 Genevestigator:Q80Y44
            GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
        Length = 875

 Score = 337 (123.7 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 81/231 (35%), Positives = 122/231 (52%)

Query:    87 VEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             V E + F    LS+  LK +    Y   T IQ  TI +AL G+D+             F+
Sbjct:    65 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 124

Query:   147 LPILERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
             +P+LE L Y+ +        VL++ PTREL  Q ++V R++ +       L +GG ++K 
Sbjct:   125 VPVLEAL-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH 183

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             +   +    +I++ TPGRLL H+  T  F  +++++LVLDEADR+LD  FA  M  II  
Sbjct:   184 EAERINNI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIEN 242

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN--HEVALNLRQEFV 313
               + RQT+LFSAT T +V DL  +SL  P  V+V     +     L Q ++
Sbjct:   243 LPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYI 293


>UNIPROTKB|F1P0I3 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
            Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
            OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
            Uniprot:F1P0I3
        Length = 875

 Score = 336 (123.3 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 84/225 (37%), Positives = 120/225 (53%)

Query:    85 PPVEENS--SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             P +  N    F    LS+  LK +    Y   T IQ  TI +AL G+D+           
Sbjct:    65 PQINANEIQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKT 124

Query:   143 XXFMLPILERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGL 200
               F++P LE LLY+ +        VL++ PTREL  Q ++V R++ +       L +GG 
Sbjct:   125 LAFIVPALE-LLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGK 183

Query:   201 EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
             ++K +   +    +++I TPGRLL H+  T  F  SD+++L+LDEADR+LD  FA  M  
Sbjct:   184 DLKEESERIHHI-NMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNA 242

Query:   261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
             II    + RQT+LFSAT T +V DL  +SL  P  V+V   HE A
Sbjct:   243 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWV---HEKA 284


>UNIPROTKB|Q5ZJF6 [details] [associations]
            symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
            UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
            STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
            HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
            NextBio:20822084 Uniprot:Q5ZJF6
        Length = 875

 Score = 336 (123.3 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 84/225 (37%), Positives = 120/225 (53%)

Query:    85 PPVEENS--SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXX 142
             P +  N    F    LS+  LK +    Y   T IQ  TI +AL G+D+           
Sbjct:    65 PQINANEIQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKT 124

Query:   143 XXFMLPILERLLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGL 200
               F++P LE LLY+ +        VL++ PTREL  Q ++V R++ +       L +GG 
Sbjct:   125 LAFIVPALE-LLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGK 183

Query:   201 EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
             ++K +   +    +++I TPGRLL H+  T  F  SD+++L+LDEADR+LD  FA  M  
Sbjct:   184 DLKEESERIHHI-NMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNA 242

Query:   261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
             II    + RQT+LFSAT T +V DL  +SL  P  V+V   HE A
Sbjct:   243 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWV---HEKA 284


>RGD|1311124 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
            Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
        Length = 480

 Score = 326 (119.8 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 75/206 (36%), Positives = 114/206 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F ++ LS  L++    L    PTP+Q   IP  L GRD              F+LPIL
Sbjct:     2 AGFAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++L     D      LVL PTREL  Q+ +  R L +   ++  + VGG+++  Q   L 
Sbjct:    62 QKL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +F++  I  LVLDEADR+L++    F + ++ I+     
Sbjct:   119 RKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPA 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD + +L  ++  +P
Sbjct:   179 RRQTLLFSATLTDTLKELQGLATNQP 204


>ASPGD|ASPL0000061778 [details] [associations]
            symbol:AN0589 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
            InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
            ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
            EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
            HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
        Length = 812

 Score = 335 (123.0 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 86/255 (33%), Positives = 128/255 (50%)

Query:    52 KKQKRLAKEGKLKQVXXXXXXXXXXXXXXXXDAPPVEENSSFHQMNLSRPLLKAIGALNY 111
             K  K   K G LK+                 D     E  SF  + +S P L  + + ++
Sbjct:    11 KHAKSSNKSGNLKRKRVQEDLSSLIKRVEDLDLKAKYE--SFSDLPISEPTLSGLTSSHF 68

Query:   112 IYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQN-TRVLVLVP 170
                T IQ+  I  AL GRD+             F++PILE L  K   D +    L++ P
Sbjct:    69 KTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHDGLGALIISP 128

Query:   171 TRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNT 230
             TREL +Q+++V R++ ++ +    L +GG  +K ++  L +  +I++ TPGR+L HL  T
Sbjct:   129 TRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERLGRM-NILVCTPGRMLQHLDQT 187

Query:   231 PSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSL 290
               F   ++++LVLDEADR++D  F   +  II      RQT+LFSAT T  V+DL  +SL
Sbjct:   188 AFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPERQTLLFSATQTKKVSDLARLSL 247

Query:   291 TRPVRVFVDNNHEVA 305
               P  V V   HE A
Sbjct:   248 QDPEYVAV---HEAA 259


>UNIPROTKB|Q5L3G9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
            ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
            KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
            BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
        Length = 467

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 74/241 (30%), Positives = 129/241 (53%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ LS+ ++KAI  + +   TPIQA TIP++L  +D+             F +PI+
Sbjct:     2 TTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             E++  K   +   + LV+ PTREL +QV +   ++     V V    GG +++ Q   L+
Sbjct:    62 EKVNVK---NSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             K P +++ TPGR++DH+ N  +  L  +  +VLDEAD ML+  F   ++ I+      RQ
Sbjct:   119 KHPHVIVGTPGRIIDHI-NRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSATM D +  +    +  P  V V        N++Q ++    + E + +++L  +
Sbjct:   178 TLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLE---VHEKKKFDILTRL 234

Query:   331 L 331
             L
Sbjct:   235 L 235


>TAIR|locus:2160225 [details] [associations]
            symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
            ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
            PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
            KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
            OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
            Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
        Length = 739

 Score = 333 (122.3 bits), Expect = 3.3e-29, P = 3.3e-29
 Identities = 75/209 (35%), Positives = 115/209 (55%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F Q+ +S    + +    Y+  T +Q+A IP AL GRDI             F++PILE+
Sbjct:    73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132

Query:   153 LLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE-VKVQESVL 209
             L ++ R   +     +++ PTREL  Q + V  ++ +F      L +GG E V V++  +
Sbjct:   133 L-HRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERV 191

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
              +  +I++  PGRLL H+  TP+F    +++L+LDEADR+LD  F  Q+  II    + R
Sbjct:   192 HEM-NILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHR 250

Query:   270 QTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
             QT+LFSAT T  V DL  +SL  P  + V
Sbjct:   251 QTLLFSATQTKKVKDLARLSLRDPEYISV 279


>MGI|MGI:2136689 [details] [associations]
            symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
            OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
            RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
            ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
            PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
            KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
            Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
            GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
        Length = 480

 Score = 324 (119.1 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 74/206 (35%), Positives = 114/206 (55%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F ++ LS  L++    L    PTP+Q   IP  L GRD              F+LPIL
Sbjct:     2 AGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++L     D      LVL PTREL  Q+ +  R L +   ++  + VGG+++  Q   L 
Sbjct:    62 QKL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +F++  I+ LV+DEADR+L++    F + ++ I+     
Sbjct:   119 RKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPA 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD + +L  ++   P
Sbjct:   179 RRQTLLFSATLTDTLKELQGLATNEP 204


>TIGR_CMR|GSU_0189 [details] [associations]
            symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
            ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
            PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
            Uniprot:Q74GQ7
        Length = 460

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 83/214 (38%), Positives = 114/214 (53%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  + L  P+L+ + +L Y   TPIQA ++P+ L G+D+             F + +L 
Sbjct:     5 AFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLS 64

Query:   152 RLLYKPRDDQNTRV--LVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             RL     D  + RV  LVL PTREL  QV +  R+LA+FT ++++    GG+    Q   
Sbjct:    65 RL-----DALSFRVQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGS 119

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L     +VI TPGRLLDHL    S  LS +  LVLDEADRMLD  F   +  +I      
Sbjct:   120 LEHGAHVVIGTPGRLLDHLRRG-SLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPK 178

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302
             RQT+LFSAT  D++  + +     PV V VD  H
Sbjct:   179 RQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVH 212


>ZFIN|ZDB-GENE-031030-3 [details] [associations]
            symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
            HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
            RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
            STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
            NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
        Length = 468

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 76/228 (33%), Positives = 123/228 (53%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F  + LS  L++    +    PT +Q   IP  L GRD              F+LP+L
Sbjct:     2 ATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++L     D      LVL PTREL  Q+ +  R L +   ++  + VGG+++  Q   L 
Sbjct:    62 QKL---SEDPYGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             K P +V+ATPGRL DH+ ++ + +L+ I+ L++DEADR+L++    F   ++ I+     
Sbjct:   119 KKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPA 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL--NLRQEFV 313
              RQT+LFSAT+TD +  L S+++ RP   F ++  +V     L Q F+
Sbjct:   179 KRQTLLFSATLTDTLQQLQSIAMNRPF--FWEHKSDVQTVEELDQRFI 224


>UNIPROTKB|Q9Y6V7 [details] [associations]
            symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
            HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
            RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
            SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
            DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
            Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
            CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
            PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
            PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
            Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
            GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
        Length = 483

 Score = 324 (119.1 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 75/206 (36%), Positives = 113/206 (54%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F ++ LS  L++    L    PTP+Q   IP  L GRD              F+LPIL
Sbjct:     2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++L     D      LVL PTREL  Q+ +  R L +   ++  + VGG+++  Q   L 
Sbjct:    62 QKL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +FS+  I  LV+DEADR+L++    F   ++ I+     
Sbjct:   119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPA 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD + +L  ++  +P
Sbjct:   179 RRQTLLFSATLTDTLRELQGLATNQP 204


>UNIPROTKB|E2RBM7 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
            EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
            Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
            NextBio:20858886 Uniprot:E2RBM7
        Length = 488

 Score = 324 (119.1 bits), Expect = 4.9e-29, P = 4.9e-29
 Identities = 75/206 (36%), Positives = 113/206 (54%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F ++ LS  L++    L    PTP+Q   IP  L GRD              F+LPIL
Sbjct:     2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             ++L     D      LVL PTREL  Q+ +  R L +   ++  + VGG+++  Q   L 
Sbjct:    62 QKL---SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELS 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE---HFASQMKEIIRLCSR 267
             + P +VIATPGRL DHL ++ +FS+  I  LV+DEADR+L++    F   ++ I+     
Sbjct:   119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPT 178

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRP 293
              RQT+LFSAT+TD + +L  ++  +P
Sbjct:   179 RRQTLLFSATLTDTLKELQGLATNQP 204


>UNIPROTKB|Q8EI96 [details] [associations]
            symbol:srmB "ATP-dependent RNA helicase SrmB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
            RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
            KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
        Length = 420

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 76/209 (36%), Positives = 114/209 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F    L   LL+++ A+ ++ PT IQ  T+P AL  RDI             F+LP L+ 
Sbjct:     3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query:   153 LLYKPRD-DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L+  PR      RVL+L PTREL  Q+++    LA    + +A+  GG+    QE  L+ 
Sbjct:    63 LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI++ATPGRL+++L +   FS   +++L++DEADRMLD  F++ +K I       +Q 
Sbjct:   123 NIDILVATPGRLMEYL-DKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181

Query:   272 MLFSATMTDA-VNDLVSVSLTRPVRVFVD 299
             MLFSAT+  + V       L  P+ + VD
Sbjct:   182 MLFSATLEGSGVIRFAREVLNDPIEIDVD 210


>TIGR_CMR|SO_0947 [details] [associations]
            symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
            RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
            KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
        Length = 420

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 76/209 (36%), Positives = 114/209 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F    L   LL+++ A+ ++ PT IQ  T+P AL  RDI             F+LP L+ 
Sbjct:     3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query:   153 LLYKPRD-DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L+  PR      RVL+L PTREL  Q+++    LA    + +A+  GG+    QE  L+ 
Sbjct:    63 LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               DI++ATPGRL+++L +   FS   +++L++DEADRMLD  F++ +K I       +Q 
Sbjct:   123 NIDILVATPGRLMEYL-DKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181

Query:   272 MLFSATMTDA-VNDLVSVSLTRPVRVFVD 299
             MLFSAT+  + V       L  P+ + VD
Sbjct:   182 MLFSATLEGSGVIRFAREVLNDPIEIDVD 210


>UNIPROTKB|E2QY95 [details] [associations]
            symbol:DDX39A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
            GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:10212
            KO:K13182 GeneTree:ENSGT00660000095549 OMA:WANCVIS
            EMBL:AAEX03012368 RefSeq:XP_533895.2 Ensembl:ENSCAFT00000025943
            GeneID:476689 KEGG:cfa:476689 NextBio:20852303 Uniprot:E2QY95
        Length = 427

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 80/246 (32%), Positives = 141/246 (57%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q T VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  + N  S +L +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKKNCPHVVVGTPGRILALVRNR-SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 326 (119.8 bits), Expect = 7.4e-29, P = 7.4e-29
 Identities = 73/205 (35%), Positives = 105/205 (51%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF   N +  ++  + A  Y  PTPIQA  IP  L G D+             + LP+++
Sbjct:     2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             ++L  PR     R LVL PTREL  Q+ +  R L Q   +      GG+ +  Q   LR 
Sbjct:    62 KMLSTPRG--RVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRS 119

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               D+V+A PGRLLDH+    +  +  +E L++DEADRM D  F   ++ I++   +  QT
Sbjct:   120 GVDVVVACPGRLLDHIWRG-TIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQT 178

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRV 296
             +LFSATM   V  L   + T PV +
Sbjct:   179 LLFSATMPPEVRKLTLETQTNPVTI 203


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 325 (119.5 bits), Expect = 7.6e-29, P = 7.6e-29
 Identities = 75/229 (32%), Positives = 117/229 (51%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F    L+  +LKA+    Y  PTPIQ   IP  L+G D+             F+LP++
Sbjct:     4 TTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMI 63

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +RL       +  R L+L PTREL  QV +   +  ++  + +AL +GG+  K QE++L+
Sbjct:    64 QRLSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQ 123

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             +  D++IATPGRL+D   +     +  +E L++DEADRMLD  F   +++I       RQ
Sbjct:   124 RGVDVLIATPGRLMDQF-DRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQ 182

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNID 319
             T+LFSAT    +  L       P ++ V    + A  + Q  V     D
Sbjct:   183 TLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTND 231


>UNIPROTKB|F1SCH3 [details] [associations]
            symbol:DDX39A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
            GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095549 OMA:WANCVIS EMBL:FP103015
            Ensembl:ENSSSCT00000015052 Uniprot:F1SCH3
        Length = 475

 Score = 321 (118.1 bits), Expect = 8.3e-29, P = 8.3e-29
 Identities = 80/246 (32%), Positives = 141/246 (57%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    91 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 150

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q T VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   151 LQQI--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 207

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  + N  S +L +++  VLDE D+ML++      ++EI RL  
Sbjct:   208 LKKNCPHVVVGTPGRILALVRNR-SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 266

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   267 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 326

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   327 DLLDVL 332


>ZFIN|ZDB-GENE-040825-3 [details] [associations]
            symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
            GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
            EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
            UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
            GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
            Uniprot:Q6DRE7
        Length = 557

 Score = 325 (119.5 bits), Expect = 9.3e-29, P = 9.3e-29
 Identities = 87/259 (33%), Positives = 138/259 (53%)

Query:    87 VEENS-SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXF 145
             +EE+S  FH+M L   LLKA+  L +  PT IQ   IP+AL G+D+             +
Sbjct:     1 MEEDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY 60

Query:   146 MLPILERLLYKPRD--DQNTRVLVLVPTRELGVQVYQVTRQLAQFTS--VEVALSVGGLE 201
              +P+++R+L   +   +Q  R +VLVPT+ELG QV  + RQL  + S  V VA   G  +
Sbjct:    61 AVPLIQRVLTSKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKAD 120

Query:   202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSL-SDIEVLVLDEADRMLDEHFASQMKE 260
             +  Q+ +L + PDIV++TP R+  H+ N  +  L S +E+LV+DEAD +    F + +K 
Sbjct:   121 LSAQKPILMEKPDIVVSTPSRIQAHI-NAQNLQLHSSLEMLVIDEADLLFSFGFEADLKN 179

Query:   261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF-VSFSNID 319
             ++    +  Q  L SAT+ D V  L  + L  PV + +  +     +  Q+F +     D
Sbjct:   180 LLCHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEED 239

Query:   320 EVRL-YNVLGLMLLRENCL 337
             +  L Y +L L L++   L
Sbjct:   240 KFLLIYTMLKLGLIQGKTL 258


>UNIPROTKB|Q5E970 [details] [associations]
            symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
            isoform 1" species:9913 "Bos taurus" [GO:0006406 "mRNA export from
            nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
            GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334
            KO:K13182 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
            OMA:WANCVIS EMBL:DAAA02019335 EMBL:BT021050 IPI:IPI00700228
            RefSeq:NP_001029924.1 UniGene:Bt.29896 SMR:Q5E970 STRING:Q5E970
            Ensembl:ENSBTAT00000029088 GeneID:614215 KEGG:bta:614215
            InParanoid:Q5E970 NextBio:20899000 Uniprot:Q5E970
        Length = 427

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 81/246 (32%), Positives = 140/246 (56%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG DI             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q T VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 159

Query:   209 L-RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L R CP +V+ TPGR+L  + N  S +L +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKRNCPHVVVGTPGRILALVRNR-SLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>UNIPROTKB|P21693 [details] [associations]
            symbol:dbpA species:83333 "Escherichia coli K-12"
            [GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
            activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
            [GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
            evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
            "ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
            GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
            ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
            EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
            GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
            PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
            HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
            BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
            BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
            GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
        Length = 457

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 81/236 (34%), Positives = 128/236 (54%)

Query:    91 SSFHQMNLSRPL-LKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             ++F  +N+  P  L  +  L Y+  TP+QAA +P  L G+D+             F L +
Sbjct:     2 TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++         T+ LVL PTREL  QV    R+LA+F  + ++    GG    +Q   
Sbjct:    62 LQQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L+  P I++ATPGRLLDHL    + SL  +  LV+DEADRMLD  F+  + ++IR    +
Sbjct:   119 LQHAPHIIVATPGRLLDHLQKG-TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177

Query:   269 RQTMLFSATMTDAVNDLVSVSLTR-PVRVFVDNNHEVALNLRQEFVSFSNIDEVRL 323
             RQT+LFSAT  +A+   +S  + R P+ + +D+   +   + Q+F   S+  ++ L
Sbjct:   178 RQTLLFSATWPEAIA-AISGRVQRDPLAIEIDSTDALP-PIEQQFYETSSKGKIPL 231


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 80/214 (37%), Positives = 115/214 (53%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F ++ L  PLL  +  L Y  PTPIQA  IP    GRD+             F LP+L
Sbjct:     8 ATFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPML 67

Query:   151 ERLLYK-PRDDQNTRV-----LVLVPTRELGVQVYQVTRQLAQFTSVEV-ALSV-GGLEV 202
             ++L        +N++      LVLVPTREL  QV    +  A   + E+  L+V GG+ V
Sbjct:    68 QKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSV 127

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
              +Q   LR   DI++ATPGRLLD L ++ +  L  ++ LVLDEADRML   F  ++  ++
Sbjct:   128 NIQMLALRGGVDILVATPGRLLD-LISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALL 186

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              L  + +QT+LFSAT  + V  L    L  P+ +
Sbjct:   187 ALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEI 220


>TAIR|locus:2159527 [details] [associations]
            symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
            to water deprivation" evidence=IMP] [GO:0009651 "response to salt
            stress" evidence=IMP] [GO:0042991 "transcription factor import into
            nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
            EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
            UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
            PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
            KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
            OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
            Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
        Length = 563

 Score = 322 (118.4 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 89/249 (35%), Positives = 135/249 (54%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F Q  LS   LK I    +   T +Q AT+P+ L G+DI             F+LP +E 
Sbjct:    82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141

Query:   153 LLYKP---RDDQNTRVLVLV--PTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQE 206
             ++  P   RD+++  ++VLV  PTREL  Q       L ++  S+ V + +GG ++  ++
Sbjct:   142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201

Query:   207 SVLRKCP-DIVIATPGRLLDHLHNTPSFS--LSDIEVLVLDEADRMLDEHFASQMKEIIR 263
               L+K P  I++ATPGRL DH+ NT  F+  L  ++VLVLDEAD +LD  F  +++ II 
Sbjct:   202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEV-R 322
                + RQT LFSAT++D V  +  V+L R    FV+   E A    Q+      I  + R
Sbjct:   262 AVPKQRQTFLFSATVSDEVRQICHVALKRD-HEFVNCVQEGAGETHQKVSQMYMIASLDR 320

Query:   323 LYNVL-GLM 330
              +++L GL+
Sbjct:   321 HFSLLYGLL 329


>DICTYBASE|DDB_G0291804 [details] [associations]
            symbol:ddx6 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
            ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
            EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
            OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
        Length = 423

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 70/189 (37%), Positives = 108/189 (57%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             E + F  ++L R LL+ I    Y+ P+PIQ   IP+AL GRDI             F++P
Sbjct:    47 EGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIP 106

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              LE+    P  D   +VL+LVPTREL +Q  QV ++L ++ +V+V  S GG  +K     
Sbjct:   107 ALEKT--DPTKDV-IQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMR 163

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L     I++ATPGR+LD      + +LS+   +++DEAD++L + F   ++++I    + 
Sbjct:   164 LYNPVHILVATPGRVLDLAQKNVA-NLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQ 222

Query:   269 RQTMLFSAT 277
             RQ +LFSAT
Sbjct:   223 RQILLFSAT 231


>TIGR_CMR|CPS_1590 [details] [associations]
            symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
            STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
            OMA:AISECGY ProtClustDB:CLSK768209
            BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
        Length = 455

 Score = 250 (93.1 bits), Expect = 2.7e-28, Sum P(2) = 2.7e-28
 Identities = 55/155 (35%), Positives = 89/155 (57%)

Query:   156 KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDI 215
             K    Q  R L+L PTREL  QV    +Q +Q+  ++  +  GG ++  Q  +L++  D+
Sbjct:    85 KSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDV 144

Query:   216 VIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFS 275
             ++ATPGRLL+HL    +  LS ++ LVLDEADRMLD  F + +++++       QT++FS
Sbjct:   145 LVATPGRLLEHLA-LRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFS 203

Query:   276 ATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             AT +D V  L +  L  P  + V   +  +  ++Q
Sbjct:   204 ATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQ 238

 Score = 91 (37.1 bits), Expect = 2.7e-28, Sum P(2) = 2.7e-28
 Identities = 23/62 (37%), Positives = 28/62 (45%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             S   + LS  LLKA+ A  Y   TPIQ   IPV   G D+             F LPIL+
Sbjct:     2 SVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILD 61

Query:   152 RL 153
              +
Sbjct:    62 AI 63


>UNIPROTKB|Q5ZHZ0 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
            EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
            Uniprot:Q5ZHZ0
        Length = 428

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 81/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  SV+VA+  GGL VK  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|Q3T147 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
            from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
            binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
            [GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
            secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
            evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IEA] [GO:0000346 "transcription export
            complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
            OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
            IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
            ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
            Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
            InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
            ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
            GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
        Length = 428

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 80/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  SV+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|Q9KU63 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0016070 "RNA metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
            RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
            GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 72/188 (38%), Positives = 105/188 (55%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  + L   LL+AI  + +  PT +QA  IP AL GRD+             F++P L+
Sbjct:     4 TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query:   152 RLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
              LL  PR      R+L+L PTREL +QV +  + LA+ T + +    GG++ +    +L 
Sbjct:    64 YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                DIV+ATPGRLL+++ +   F    IE L+LDEADRMLD  F   +  +   C   +Q
Sbjct:   124 TTQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQ 182

Query:   271 TMLFSATM 278
             T+LFSAT+
Sbjct:   183 TLLFSATL 190


>TIGR_CMR|VC_0660 [details] [associations]
            symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
            KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
            ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
            KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
        Length = 423

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 72/188 (38%), Positives = 105/188 (55%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  + L   LL+AI  + +  PT +QA  IP AL GRD+             F++P L+
Sbjct:     4 TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query:   152 RLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
              LL  PR      R+L+L PTREL +QV +  + LA+ T + +    GG++ +    +L 
Sbjct:    64 YLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA 123

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                DIV+ATPGRLL+++ +   F    IE L+LDEADRMLD  F   +  +   C   +Q
Sbjct:   124 TTQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQ 182

Query:   271 TMLFSATM 278
             T+LFSAT+
Sbjct:   183 TLLFSATL 190


>MGI|MGI:1915528 [details] [associations]
            symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
            OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
            EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
            IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
            ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
            PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
            Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
            Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
            UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
            InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
            CleanEx:MM_DDX39 Genevestigator:Q8VDW0
            GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
        Length = 427

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 79/246 (32%), Positives = 140/246 (56%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q   VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPVNGQ-VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  L  + S +L +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKKNCPHVVVGTPGRILA-LVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>RGD|619920 [details] [associations]
            symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
            species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
            GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
            OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
            EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
            ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
            Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
            InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
            GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
        Length = 427

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 79/246 (32%), Positives = 140/246 (56%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q   VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPINGQ-VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  L  + S +L +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKKNCPHVVVGTPGRILA-LVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>ZFIN|ZDB-GENE-030131-4275 [details] [associations]
            symbol:ddx39aa "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 39Aa" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-4275 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BC071505
            IPI:IPI00510085 UniGene:Dr.1111 ProteinModelPortal:Q6IQA5
            SMR:Q6IQA5 STRING:Q6IQA5 PRIDE:Q6IQA5 InParanoid:Q6IQA5
            ArrayExpress:Q6IQA5 Bgee:Q6IQA5 Uniprot:Q6IQA5
        Length = 427

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 79/246 (32%), Positives = 138/246 (56%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG DI             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQESV 208
             L+++  +P D Q   VLV+  TREL  Q+ +   + +++ +SV+ A   GG+ +K  E V
Sbjct:   103 LQQI--EPVDGQ-VSVLVMCHTRELAFQISKEYERFSKYMSSVKCAAFFGGMSIKKDEDV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L  L    + +L +++  VLDE D+ML++      +++I RL  
Sbjct:   160 LKKNCPHIVVGTPGRILA-LSRNKTLTLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>UNIPROTKB|Q65N62 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
            EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
            ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
            EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
            GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
            GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
            PATRIC:18946609 ProtClustDB:CLSK886742
            BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
        Length = 487

 Score = 315 (115.9 bits), Expect = 5.5e-28, P = 5.5e-28
 Identities = 76/240 (31%), Positives = 121/240 (50%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F    LS  L KAI  + +   TPIQA TIP+ L  +D+             F +P++E
Sbjct:     4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             ++   P +  N + +V+ PTREL +QV +   ++ Q     V    GG ++  Q   L+K
Sbjct:    64 KI--NP-ESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK 120

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
              P I++ TPGRLLDH+ N  +  L  +  +VLDEAD ML+  F   ++ I+       QT
Sbjct:   121 NPHIIVGTPGRLLDHI-NRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLML 331
             +LFSATM   +  +    +T P  V V        N++Q ++    + E + ++ L  +L
Sbjct:   180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLE---VHERKKFDTLTRLL 236


>POMBASE|SPAC1093.05 [details] [associations]
            symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
            OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
            ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
            EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
            NextBio:20802723 Uniprot:Q9UTP9
        Length = 735

 Score = 321 (118.1 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 76/225 (33%), Positives = 119/225 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F ++ L++P   A+   ++I  T IQ   IP AL GRDI             F++P++E 
Sbjct:    41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100

Query:   153 LLYKPRDD-QNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L  K          LV+ PTREL +Q ++   ++ +  S    L +GG   K ++  L +
Sbjct:   101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR 160

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               +I++ TPGRLL H+    +F  S +++L+LDEADR+LD  F + +  I+      RQT
Sbjct:   161 M-NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQT 219

Query:   272 MLFSATMTDAVNDLVSVSLTRP--VRVFVDNNHEVALNLRQEFVS 314
             MLFSAT T +V DL  +SL  P  + V  ++      NL Q +++
Sbjct:   220 MLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLT 264


>UNIPROTKB|Q5WR10 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
            "intronless viral mRNA export from host nucleus" evidence=IEA]
            [GO:0043008 "ATP-dependent protein binding" evidence=IEA]
            [GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
            binding" evidence=IEA] [GO:0010501 "RNA secondary structure
            unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
            [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0000346 "transcription export complex"
            evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
            HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
            CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
            GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
            RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
            SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
            InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
        Length = 428

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|F6WLT2 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
            Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
            EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
            EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
            IPI:IPI00643815 SMR:F6WLT2 Ensembl:ENST00000414088
            Ensembl:ENST00000417558 Ensembl:ENST00000427214
            Ensembl:ENST00000435182 Ensembl:ENST00000438449
            Ensembl:ENST00000439927 Ensembl:ENST00000455916 Uniprot:F6WLT2
        Length = 289

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|F8VZL8 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
            Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
            EMBL:CR753892 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:BX001040
            EMBL:BX248516 EMBL:BX927320 EMBL:CR753820 EMBL:CR753864
            HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI00643815
            SMR:F8VZL8 Ensembl:ENST00000546633 Ensembl:ENST00000546637
            Ensembl:ENST00000548331 Ensembl:ENST00000549374
            Ensembl:ENST00000550435 Ensembl:ENST00000551031 Uniprot:F8VZL8
        Length = 323

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|Q13838 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
            evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IGI] [GO:0000346 "transcription export complex"
            evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
            nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
            [GO:0000245 "spliceosomal complex assembly" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
            "ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
            snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
            [GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
            binding" evidence=IDA] [GO:0010501 "RNA secondary structure
            unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
            GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
            EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
            HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
            GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
            EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
            EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
            EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
            EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
            RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
            UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
            PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
            ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
            MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
            PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
            Ensembl:ENST00000396172 Ensembl:ENST00000400295
            Ensembl:ENST00000400296 Ensembl:ENST00000412106
            Ensembl:ENST00000412330 Ensembl:ENST00000413678
            Ensembl:ENST00000414440 Ensembl:ENST00000415689
            Ensembl:ENST00000416863 Ensembl:ENST00000430784
            Ensembl:ENST00000431360 Ensembl:ENST00000441425
            Ensembl:ENST00000445218 Ensembl:ENST00000448296
            Ensembl:ENST00000453138 Ensembl:ENST00000456476
            Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
            KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
            HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
            InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
            EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
            ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
            GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
        Length = 428

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|Q5STU3 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
            EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
            UniGene:Hs.730849 HGNC:HGNC:13917 EMBL:CR942185 IPI:IPI00790636
            SMR:Q5STU3 STRING:Q5STU3 Ensembl:ENST00000376177
            Ensembl:ENST00000400293 Ensembl:ENST00000430703
            Ensembl:ENST00000438578 Ensembl:ENST00000446341
            Ensembl:ENST00000450987 Ensembl:ENST00000453488 Uniprot:Q5STU3
        Length = 425

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|Q29024 [details] [associations]
            symbol:DDX39B "Spliceosome RNA helicase DDX39B"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
            mRNA export from host nucleus" evidence=IEA] [GO:0043008
            "ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
            binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0000346 "transcription export complex" evidence=IEA]
            [GO:0000245 "spliceosomal complex assembly" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
            GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
            HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
            CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
            GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
            RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
            SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
            GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
        Length = 428

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>MGI|MGI:99240 [details] [associations]
            symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
            evidence=ISO] [GO:0000346 "transcription export complex"
            evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
            complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
            export from nucleus" evidence=ISO] [GO:0006810 "transport"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
            "RNA secondary structure unwinding" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
            evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
            [GO:0043008 "ATP-dependent protein binding" evidence=ISO]
            [GO:0046784 "intronless viral mRNA export from host nucleus"
            evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
            GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
            GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
            GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
            GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
            GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
            EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
            EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
            RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
            SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
            PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
            Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
            KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
            CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
        Length = 428

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>RGD|70923 [details] [associations]
            symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
           species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
           assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
           complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
           spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
           evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
           evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
           [GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
           complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
           [GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
           evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
           evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
           evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
           evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
           "RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
           "nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
           evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
           [GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
           [GO:0046784 "intronless viral mRNA export from host nucleus"
           evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
           Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
           GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
           SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
           eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
           GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
           GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
           GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
           GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
           IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
           ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
           World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
           GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
           NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
           GermOnline:ENSRNOG00000000841 Uniprot:Q63413
        Length = 428

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 79/246 (32%), Positives = 137/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GGL +K  E V
Sbjct:   104 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 160

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L    N  S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   161 LKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 219

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   220 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 279

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   280 DLLDVL 285


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 69/236 (29%), Positives = 125/236 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F ++ L  PLLKA+  L +  PTPIQ   IP+ L G ++             ++LP+L+R
Sbjct:     4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             +    +  +  +VL++ PTREL +QV     +L ++  V      GG  ++ Q   LR+ 
Sbjct:    64 I----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
              ++++ TPGR+LDH+    +F  ++I++++LDEAD MLD  F   ++ I+   +  +QT+
Sbjct:   120 VEVIVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178

Query:   273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR-LYNVL 327
             LFSAT+   +  ++   L     V +    +    +RQ +      +++  L ++L
Sbjct:   179 LFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSIL 234


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 69/236 (29%), Positives = 125/236 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F ++ L  PLLKA+  L +  PTPIQ   IP+ L G ++             ++LP+L+R
Sbjct:     4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             +    +  +  +VL++ PTREL +QV     +L ++  V      GG  ++ Q   LR+ 
Sbjct:    64 I----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
              ++++ TPGR+LDH+    +F  ++I++++LDEAD MLD  F   ++ I+   +  +QT+
Sbjct:   120 VEVIVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178

Query:   273 LFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR-LYNVL 327
             LFSAT+   +  ++   L     V +    +    +RQ +      +++  L ++L
Sbjct:   179 LFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSIL 234


>ZFIN|ZDB-GENE-040426-2902 [details] [associations]
            symbol:ddx39ab "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 39Ab" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-040426-2902 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            HOVERGEN:HBG107334 KO:K13182 OrthoDB:EOG4XSKPX
            GeneTree:ENSGT00660000095549 OMA:WANCVIS CTD:7919 EMBL:FP101915
            EMBL:BC044169 EMBL:BC067555 EMBL:BC128804 EMBL:BX248081
            IPI:IPI00631848 RefSeq:NP_998142.1 UniGene:Dr.75872 SMR:Q803W0
            STRING:Q803W0 Ensembl:ENSDART00000019957 GeneID:406249
            KEGG:dre:406249 InParanoid:Q803W0 NextBio:20817884 Uniprot:Q803W0
        Length = 427

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 78/246 (31%), Positives = 139/246 (56%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG DI             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P D Q   VLV+  TREL  Q+ +   + +++  +V+VA+  GG+ +K  E V
Sbjct:   103 LQQI--EPVDGQ-VSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP IV+ TPGR+L  + N  + +L +++  VLDE D+ML++      +++I RL  
Sbjct:   160 LKKSCPHIVVGTPGRILALVRNK-TLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTP 218

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ VFVD+  ++ L+ L+Q +    + ++ R L+
Sbjct:   219 HEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDNEKNRKLF 278

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   279 DLLDVL 284


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 318 (117.0 bits), Expect = 8.7e-28, P = 8.7e-28
 Identities = 81/226 (35%), Positives = 115/226 (50%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             E  ++F  + L  P+L+A+  L Y  P+PIQA  IP  L GRD+             F L
Sbjct:     3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62

Query:   148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQE 206
             P+L+ L   P + +  ++LVL PTREL VQV +     ++    V V    GG    VQ 
Sbjct:    63 PLLQNL--DP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
               LR+ P IV+ TPGRLLDHL    +  LS +  LVLDEAD ML   F   ++ I+    
Sbjct:   120 RALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEF 312
                QT LFSATM +A+  +    +  P  V + ++     ++ Q +
Sbjct:   179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY 224


>UNIPROTKB|Q0C354 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
            GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
            BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
        Length = 464

 Score = 311 (114.5 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 78/210 (37%), Positives = 106/210 (50%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             S F  + L+  +L ++    Y  PTPIQ   IP+ + GRDI             F  PIL
Sbjct:     7 SDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPIL 66

Query:   151 ERLLYK--PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             +RL     P   + TRVLVL PTREL  Q+           ++ V +  GG ++  Q   
Sbjct:    67 DRLSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQ 126

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L +   I++ATPGRL+D L    + SL  +E L+LDEAD+MLD  F   ++ I +     
Sbjct:   127 LERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSK 185

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
             RQT+ FSATM  AV  L +  L  P  V V
Sbjct:   186 RQTLFFSATMPKAVESLAATFLRNPAEVSV 215


>TIGR_CMR|SO_4034 [details] [associations]
            symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
            acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
            ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
            PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
        Length = 623

 Score = 317 (116.6 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 78/242 (32%), Positives = 125/242 (51%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             +  +F ++ LS  LL+A+  L Y  PTPIQ+A+I   + G+DI             F LP
Sbjct:     4 DERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALP 63

Query:   149 ILERLLYKPRDDQNT-RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV-GGLEVKVQE 206
             +L ++       Q T ++LVL PTREL VQV +     A+F      L + GG  ++ Q 
Sbjct:    64 LLNKVT-----SQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQL 118

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
             + L++ P +++ TPGR++DH+    +  L  ++ LVLDEAD ML   F   ++ I+    
Sbjct:   119 NALKRGPQVIVGTPGRVMDHMRRG-TLKLETLQALVLDEADEMLKMGFIDDIEWILEHTP 177

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR-LYN 325
               RQ  LFSATM + +  + +  L     + +  +H    ++ Q FV  S  +++  L  
Sbjct:   178 PQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVR 237

Query:   326 VL 327
             VL
Sbjct:   238 VL 239


>UNIPROTKB|Q11039 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A homolog"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
            RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
            PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
            EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
            GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
            PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
            ProtClustDB:CLSK791051 Uniprot:Q11039
        Length = 563

 Score = 315 (115.9 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 80/229 (34%), Positives = 116/229 (50%)

Query:    86 PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXF 145
             P    ++F  + +   +L+AIG + Y  PT IQAATIP  + G D+             F
Sbjct:     8 PAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAF 67

Query:   146 MLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVT-RQLAQFTSVEVALSVGGLEVKV 204
              +P+L ++    +  Q    LVLVPTREL +QV +   R  A  + + V    GG    V
Sbjct:    68 AIPMLSKIDITSKVPQ---ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAV 124

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             Q + LR+   +V+ TPGR++DHL    +  LS ++ LVLDEAD ML   FA  ++ I+  
Sbjct:   125 QLAGLRRGAQVVVGTPGRMIDHLERA-TLDLSRVDFLVLDEADEMLTMGFADDVERILSE 183

Query:   265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
                 +Q  LFSATM  A+  L +  L  P  V       VA N+ Q ++
Sbjct:   184 TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI 232


>DICTYBASE|DDB_G0293168 [details] [associations]
            symbol:ddx17 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
            RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
            PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
            KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
        Length = 785

 Score = 316 (116.3 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 84/229 (36%), Positives = 119/229 (51%)

Query:    85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXX 144
             PP+ +   F Q      L+K I    +  PTPIQ+   P+AL GRDI             
Sbjct:   381 PPIMQ---FTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLA 437

Query:   145 FMLPILERLLYKP--RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
             F+LP +  +  +P  R+D    VLVL PTREL +Q+ + T +    + +      GG   
Sbjct:   438 FLLPSIVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASK 497

Query:   203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
               Q + L+K  +IVIATPGRL+D L +  + +L  +  LVLDEADRMLD  F  Q+++II
Sbjct:   498 HTQVAALKKGVEIVIATPGRLIDILESGKT-NLRRVTYLVLDEADRMLDMGFEPQIRKII 556

Query:   263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL-NLRQ 310
                   RQT++FSAT    V  L    LT  ++V + +    A  N+RQ
Sbjct:   557 SQIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQ 605


>UNIPROTKB|Q8EIE5 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 307 (113.1 bits), Expect = 2.7e-27, P = 2.7e-27
 Identities = 86/242 (35%), Positives = 121/242 (50%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  + L   LL+ + ++ Y   TPIQA ++P  L G D+             F L +L 
Sbjct:     2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLR 210
             +L  K    Q    LVL PTREL  QV Q  R LA+   +V+V    GG+ +  Q   L 
Sbjct:    62 KLDVKRFRIQT---LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLE 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                 I++ TPGR++DHL       LS++ +LVLDEADRML+  F  Q+  II    R RQ
Sbjct:   119 HGAHIIVGTPGRIVDHLDRN-RLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSAT  + +  +    +  PV V     HE    + Q F    + D+ R+   L L+
Sbjct:   178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKN-TIEQHFYQLDD-DKSRM-QALQLL 234

Query:   331 LL 332
             LL
Sbjct:   235 LL 236


>TIGR_CMR|SO_0897 [details] [associations]
            symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 307 (113.1 bits), Expect = 2.7e-27, P = 2.7e-27
 Identities = 86/242 (35%), Positives = 121/242 (50%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  + L   LL+ + ++ Y   TPIQA ++P  L G D+             F L +L 
Sbjct:     2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLR 210
             +L  K    Q    LVL PTREL  QV Q  R LA+   +V+V    GG+ +  Q   L 
Sbjct:    62 KLDVKRFRIQT---LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLE 118

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                 I++ TPGR++DHL       LS++ +LVLDEADRML+  F  Q+  II    R RQ
Sbjct:   119 HGAHIIVGTPGRIVDHLDRN-RLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSAT  + +  +    +  PV V     HE    + Q F    + D+ R+   L L+
Sbjct:   178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKN-TIEQHFYQLDD-DKSRM-QALQLL 234

Query:   331 LL 332
             LL
Sbjct:   235 LL 236


>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
            symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
            OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
            OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
            RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
            Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
            InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
        Length = 435

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 78/246 (31%), Positives = 136/246 (55%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    51 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 110

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P   Q   VLV+  TREL  Q+ +   + +++  SV+VA+  GGL +K  E V
Sbjct:   111 LQQL--EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEV 167

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K  P +V+ TPGR+L  L    S +L  I+  +LDE D+ML++      ++EI R+  
Sbjct:   168 LKKESPHVVVGTPGRILA-LSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 226

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
               +Q M+FSAT++  +  +    +  P+ +FVD+  ++ L+ L+Q +V   + ++ R L+
Sbjct:   227 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 286

Query:   325 NVLGLM 330
             ++L ++
Sbjct:   287 DLLDVL 292


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 304 (112.1 bits), Expect = 4.6e-27, P = 4.6e-27
 Identities = 76/193 (39%), Positives = 98/193 (50%)

Query:   106 IGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQNTRV 165
             I A  Y  PTPIQA  IP  + GRD+             F LPIL RL    R     R 
Sbjct:    16 IAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQGERG--RVRA 73

Query:   166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLD 225
             LV+ PTREL  Q+      L + T +      GG+ V  Q   L+   ++V+A PGRLLD
Sbjct:    74 LVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLD 133

Query:   226 HLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDL 285
             H+    +  LS +EVLVLDEAD+M D  F   ++ +++     RQT+LFSATM   +  L
Sbjct:   134 HIAQG-TIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTL 192

Query:   286 VSVSLTRPVRVFV 298
                 L  PV V V
Sbjct:   193 AQDILVDPVTVQV 205


>WB|WBGene00021277 [details] [associations]
            symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
            HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
            ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
            EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
            UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
            NextBio:872791 Uniprot:Q9N478
        Length = 732

 Score = 313 (115.2 bits), Expect = 4.6e-27, P = 4.6e-27
 Identities = 79/224 (35%), Positives = 108/224 (48%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F    LS   L+ +   +Y  PT IQ  TI  +L G D+              ++P+LE 
Sbjct:    78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137

Query:   153 LLY-KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             L   K   D     L++ PTREL +Q +     +         L +GG +V  + + +  
Sbjct:   138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISG 197

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
               +I++ TPGRLL H+      S   ++VLVLDEADRMLD  F+ Q+  II      RQT
Sbjct:   198 I-NIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQT 256

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL--NLRQEFV 313
             +LFSAT T  V DL  V    PV V V  N   A   NL+Q +V
Sbjct:   257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYV 300


>MGI|MGI:1915247 [details] [associations]
            symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
            GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
            EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
            RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
            ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
            PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
            UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
            ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
            Genevestigator:Q9DBN9 Uniprot:Q9DBN9
        Length = 619

 Score = 311 (114.5 bits), Expect = 4.8e-27, P = 4.8e-27
 Identities = 74/201 (36%), Positives = 110/201 (54%)

Query:   111 YIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQNTRVLVLVP 170
             Y  PTPIQ   IPV LLGRDI             F+LP++ R      +D+    L+L P
Sbjct:   223 YEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAF---SEDKTPSALILTP 279

Query:   171 TRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
             TREL +Q+ +  ++L      ++  L VGGL +  Q   LR+   ++IATPGRLLD +  
Sbjct:   280 TRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQ 339

Query:   230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289
             + S SLS I+++V+DEAD ML   F  Q+ +++       QT+L SAT+ D++  L    
Sbjct:   340 S-SVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQL 398

Query:   290 LTRPVRVFVDNNHEVALNLRQ 310
             L  PVR+   + +    ++RQ
Sbjct:   399 LHNPVRIITGDKNLPCASVRQ 419


>UNIPROTKB|G3V0G3 [details] [associations]
            symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
            isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
            EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
            UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
            SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
            Uniprot:G3V0G3
        Length = 375

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 86/259 (33%), Positives = 131/259 (50%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             E   F  M L   LL+A+  L +  PT IQ   IP+AL G+D+             + +P
Sbjct:     5 EALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64

Query:   149 ILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEVK 203
             +L+ LL++    P  +Q  R LVLVPT+EL  Q   + +QLA + + +V ++ V   E  
Sbjct:    65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDS 124

Query:   204 V-QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD-IEVLVLDEADRMLDEHFASQMKEI 261
             V Q +VL + PD+V+ TP R+L HL    S  L D +E+LV+DEAD +    F  ++K +
Sbjct:   125 VSQRAVLMEKPDVVVGTPSRILSHLQQD-SLKLRDSLELLVVDEADLLFSFGFEEELKSL 183

Query:   262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEV 321
             +    R  Q  L SAT  + V  L  + L  PV + +  +     +  Q+F      +E 
Sbjct:   184 LCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEED 243

Query:   322 R---LYNVLGLMLLRENCL 337
             +   LY +L L L+R   L
Sbjct:   244 KFLLLYALLKLSLIRGKSL 262


>TAIR|locus:2159517 [details] [associations]
            symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
            IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
            ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
            PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
            KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
            OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
            Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
        Length = 850

 Score = 311 (114.5 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 85/253 (33%), Positives = 134/253 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F Q  LS   LKAI    +   T +Q AT+P+ L G+D+             F+LP +E 
Sbjct:   384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443

Query:   153 LLYKP---RDDQNTRVLVLV--PTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQE 206
             ++  P   RD +   ++VLV  PTREL  Q       L ++  S+ V + +GG ++  ++
Sbjct:   444 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 503

Query:   207 SVLRKCP-DIVIATPGRLLDHLHNTPSFS--LSDIEVLVLDEADRMLDEHFASQMKEIIR 263
               ++  P  I++ATPGRL DH+ NT  F+  L  ++VLVLDEAD +LD  F   ++ II 
Sbjct:   504 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 563

Query:   264 LCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEV-R 322
                + RQT LFSAT+ + V  +  V+L R    F++   E +    Q+      I  + R
Sbjct:   564 AVPKQRQTFLFSATVPEEVRQICHVALKRD-HEFINCVQEGSGETHQKVTQMYMIASLDR 622

Query:   323 LYNVLGLMLLREN 335
              +++L + LL+E+
Sbjct:   623 HFSLLHV-LLKEH 634


>CGD|CAL0006152 [details] [associations]
            symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
            in response to nitrogen starvation" evidence=IEA] [GO:0034063
            "stress granule assembly" evidence=IEA] [GO:0000753 "cell
            morphogenesis involved in conjugation with cellular fusion"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
            decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
            "induction of conjugation upon nitrogen starvation" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
            RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
            GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
            KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
        Length = 549

 Score = 306 (112.8 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 77/227 (33%), Positives = 117/227 (51%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             +  SF   NL R LL  I    +  P+PIQ  +IP+AL GRDI             F++P
Sbjct:    28 KGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIP 87

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              L+  L KP+ ++  + L+LVPTREL +Q  QV R L +    +  ++ GG  ++     
Sbjct:    88 CLQ--LVKPKLNK-VQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVR 144

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L     I++ TPGR+LD L       LS+  + V+DEAD+ML   F   +++I+      
Sbjct:   145 LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPN 203

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315
             RQ +LFSAT   AV   +   LT+P  + + +  E+ L    +F +F
Sbjct:   204 RQALLFSATFPLAVKSFMDKHLTKPYEINLMD--ELTLKGISQFYAF 248


>UNIPROTKB|Q5AAW3 [details] [associations]
            symbol:DHH1 "ATP-dependent RNA helicase DHH1"
            species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
            SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
            KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
        Length = 549

 Score = 306 (112.8 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 77/227 (33%), Positives = 117/227 (51%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             +  SF   NL R LL  I    +  P+PIQ  +IP+AL GRDI             F++P
Sbjct:    28 KGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIP 87

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              L+  L KP+ ++  + L+LVPTREL +Q  QV R L +    +  ++ GG  ++     
Sbjct:    88 CLQ--LVKPKLNK-VQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVR 144

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L     I++ TPGR+LD L       LS+  + V+DEAD+ML   F   +++I+      
Sbjct:   145 LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPN 203

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315
             RQ +LFSAT   AV   +   LT+P  + + +  E+ L    +F +F
Sbjct:   204 RQALLFSATFPLAVKSFMDKHLTKPYEINLMD--ELTLKGISQFYAF 248


>UNIPROTKB|F5H1N9 [details] [associations]
            symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AC007215 HGNC:HGNC:18682 ChiTaRS:DDX47 IPI:IPI00792278
            ProteinModelPortal:F5H1N9 SMR:F5H1N9 PRIDE:F5H1N9
            Ensembl:ENST00000544400 ArrayExpress:F5H1N9 Bgee:F5H1N9
            Uniprot:F5H1N9
        Length = 196

 Score = 253 (94.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 51/120 (42%), Positives = 78/120 (65%)

Query:   194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
             A+ VGG++   Q   L K P I+IATPGRL+DHL NT  F+L  ++ LV+DEADR+L+  
Sbjct:    61 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD 120

Query:   254 FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
             F +++ +I+++  R R+T LFSATMT  V  L   +L  PV+  V + ++    L+Q ++
Sbjct:   121 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYI 180

 Score = 62 (26.9 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL 126
             EE  +F  + ++  L +A   L +  PT IQ   IP+AL
Sbjct:    21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL 59


>UNIPROTKB|B7Z5N6 [details] [associations]
            symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
            DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
            variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
            HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
            EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
            UCSC:uc010ppl.1 Uniprot:B7Z5N6
        Length = 567

 Score = 306 (112.8 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 75/219 (34%), Positives = 113/219 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F   +L   L   +    Y  PTPIQ   IPV LLGRDI             F+LP++ R
Sbjct:   205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRK 211
              L+   + +    L+L PTREL +Q+ +  ++L      ++  L VGGL +  Q   L++
Sbjct:   265 ALF---ESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQ 321

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
                ++IATPGRLLD +  + S  L  ++++V+DEAD ML   F  Q+ +I+       QT
Sbjct:   322 HVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQT 380

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +L SAT+  ++  L S  L  PVR+     +    N+RQ
Sbjct:   381 ILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 302 (111.4 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    95 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 154

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LER+  K   D     +V+VPTREL +QV Q+  Q+++    V+V  + GG  ++    
Sbjct:   155 LLERIDLKK--DSIQAAVVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIM 212

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L +   +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M+EI+   S+
Sbjct:   213 RLDETVHVVIATPGRILDLIKKGVA-KVGQVQMIVLDEADKLLSQDFVQMMEEILSSLSK 271

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   272 QRQILLYSATFPLSVQKFMNSHLQKPYEI 300


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 306 (112.8 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 75/219 (34%), Positives = 113/219 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F   +L   L   +    Y  PTPIQ   IPV LLGRDI             F+LP++ R
Sbjct:   205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRK 211
              L+   + +    L+L PTREL +Q+ +  ++L      ++  L VGGL +  Q   L++
Sbjct:   265 ALF---ESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQ 321

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
                ++IATPGRLLD +  + S  L  ++++V+DEAD ML   F  Q+ +I+       QT
Sbjct:   322 HVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQT 380

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +L SAT+  ++  L S  L  PVR+     +    N+RQ
Sbjct:   381 ILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 305 (112.4 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 88/243 (36%), Positives = 126/243 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F ++++S  L +  G  NY  PTPIQAAT P  L GRD+             F +P L+ 
Sbjct:   169 FDELDVSAKLRE--GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226

Query:   153 LLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC 212
             L     +    RVLV+ PTREL +Q Y+    L Q T+++  +  GG   K +++   K 
Sbjct:   227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAKN 285

Query:   213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC---SR-- 267
               ++I TPGRLLD L N  S   S +  LVLDEADRMLD  F   ++ II      +R  
Sbjct:   286 ASVIIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNG 344

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL-NLRQ--EFVSFSNIDEVRLY 324
             +RQT+ FSAT  ++V  L +  L  PV++ + ++   A  N+ Q  E +      E  L 
Sbjct:   345 SRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLD 404

Query:   325 NVL 327
             N+L
Sbjct:   405 NLL 407


>UNIPROTKB|G3V6M5 [details] [associations]
            symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
            UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
        Length = 546

 Score = 303 (111.7 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 85/260 (32%), Positives = 132/260 (50%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +E   F  M L   LL+A+  L +  PT IQ   IP+AL G+D+             + +
Sbjct:     4 QEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAI 63

Query:   148 PILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEV 202
             P+L+ LL+K    P  +Q  R LVLVPT+EL  Q   + +QLA + + +V ++ V   E 
Sbjct:    64 PMLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAED 123

Query:   203 KV-QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD-IEVLVLDEADRMLDEHFASQMKE 260
                Q +VL + PD+V+ TP R+L+HL    +  L D +E+LV+DEAD +    F  ++K 
Sbjct:   124 SASQRAVLMEKPDVVVGTPSRILNHLQQK-NLKLRDSLELLVVDEADLLFSFGFEDELKS 182

Query:   261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             ++    R  Q  L SAT  + V  L  + L  PV + +  +     +  Q+F      +E
Sbjct:   183 LLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEE 242

Query:   321 VR---LYNVLGLMLLRENCL 337
              +   LY +L L L+R   L
Sbjct:   243 DKFLLLYALLKLSLIRGKAL 262


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 304 (112.1 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 78/208 (37%), Positives = 107/208 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F   N    +L+AI  L +  PTPIQA   P+AL GRD+             ++LP L  
Sbjct:   167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226

Query:   153 LLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +  +PR   D    VL+L PTREL VQ+ + +R+    + V      GG     Q   LR
Sbjct:   227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
             +  +IVIATPGRL+D L    + +L  +  LVLDEADRMLD  F  Q+++I+      RQ
Sbjct:   287 RGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFV 298
             T+L+SAT    V  L    L  P +  +
Sbjct:   346 TLLWSATWPREVETLARQFLRDPYKAII 373


>POMBASE|SPCC1494.06c [details] [associations]
            symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
            GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
            HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
            RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
            STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
            KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
        Length = 595

 Score = 304 (112.1 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 90/258 (34%), Positives = 131/258 (50%)

Query:    88 EENS--SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXF 145
             EE+S  +F   NL   L +AI    +  PT +Q+ TIP+AL G+D+             +
Sbjct:     9 EESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAY 68

Query:   146 MLPILERLLYKPRDDQNTR---VLVLVPTRELGVQVYQVTRQLAQFTSVEVA-LSVG-GL 200
             ++PILE LL + + D+N R    L+LVPTREL  QVY V  +L  F S  +  ++V    
Sbjct:    69 LIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNS 128

Query:   201 EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
                VQ  +L   PDIVIATP R + H+ +     L  ++ LV+DEAD ML   +   MK 
Sbjct:   129 SDTVQRPLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKT 187

Query:   261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             + R   R  Q+ L SAT++  +  L  +    P  + V +  E +  L Q  V  S  D+
Sbjct:   188 LSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDK-EASGKLTQYVVKCSEQDK 246

Query:   321 VRL-YNVLGLMLLRENCL 337
               L Y +L L L++   L
Sbjct:   247 FLLAYILLKLRLIKGKIL 264


>TAIR|locus:2153564 [details] [associations]
            symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
            PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
            ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
            EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
            GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
            PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
            GermOnline:AT5G05450 Uniprot:Q9FLB0
        Length = 593

 Score = 303 (111.7 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 72/208 (34%), Positives = 114/208 (54%)

Query:    98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLL--- 154
             LS  +++A+   ++ + TP+QAATIP+    +D+             F++P++E L    
Sbjct:    23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82

Query:   155 -YKPRDDQNTRVLVLVPTRELGVQVYQVTRQ-LAQFTSVEVALSVGGLEVKVQESVLRK- 211
              + P+  Q   V++  PTREL  Q+Y V +  ++   +V   L VGG EVK    ++ + 
Sbjct:    83 SFPPKPHQVMGVIIS-PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEE 141

Query:   212 -CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
              C +++I TPGRL D +         ++E+L+LDEADR+L+  F  Q+  II    + R+
Sbjct:   142 GC-NVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFV 298
             T LFSAT T+ V +L    L  PVRV V
Sbjct:   201 TGLFSATQTEGVEELAKAGLRNPVRVEV 228


>CGD|CAL0005460 [details] [associations]
            symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
            ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
            "RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
            EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
            ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
            GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
            Uniprot:Q5APT8
        Length = 564

 Score = 277 (102.6 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
 Identities = 71/219 (32%), Positives = 114/219 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF Q+ L+  +   +   +   PTPIQ+ + P  L G+D+             F +P + 
Sbjct:   156 SFDQVQLTSAITSKLSKFDK--PTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAIN 213

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
              ++    + +   VL + PTREL +Q+Y    +L   + V      GG+    Q   + K
Sbjct:   214 NII-TTGNTKTLSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-K 271

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT-RQ 270
               ++V+ATPGRL+D L N  + +L  +  LVLDEADRML++ F   +K II   S + RQ
Sbjct:   272 TANVVVATPGRLVD-LINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQ 330

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLR 309
             T++F+AT    V +L +  +  PV+V V +  E++ N R
Sbjct:   331 TLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKR 369

 Score = 48 (22.0 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGK 62
             D + KHDN     ++   KKQ++L K+ K
Sbjct:    45 DKKRKHDN--EDVEIADSKKQRKLEKQEK 71

 Score = 38 (18.4 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query:    32 LPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLK 64
             L   E K    K  +K   +KK+K+  KE K K
Sbjct:    66 LEKQEKKDKKDKKDKKEKKEKKEKKHKKEKKHK 98


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 300 (110.7 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 72/227 (31%), Positives = 117/227 (51%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I    +  P+PIQ  +IP+AL GRDI             F +P
Sbjct:   129 KGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIP 188

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
             +LE++    +D+   + +++VPTREL +Q  QV ++L +   ++V ++ GG  +K     
Sbjct:   189 VLEKI---DQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMR 245

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L +   +++ TPGR+LD L       L D  VLV+DEAD++L + F   ++ +I     +
Sbjct:   246 LYQPVHLLVGTPGRILD-LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES 304

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSF 315
             RQ ++FSAT    V D     LT P    ++   E+ L    +F +F
Sbjct:   305 RQILMFSATFPVTVKDFKDRFLTNPY--VINLMDELTLKGITQFYAF 349


>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 299 (110.3 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
 Identities = 70/242 (28%), Positives = 126/242 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F+Q  L   +L+ +   N+     IQ  TIP  + GRD+             ++ P++  
Sbjct:   725 FYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRH 784

Query:   153 LLYK-P-RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +L++ P R++     ++L PTREL +QV    +   +  ++E+    GG  +  Q  VL+
Sbjct:   785 VLHQEPLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLK 844

Query:   211 KCPDIVIATPGRLLDHL--HNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             K  +I++ TPGR++D L   N    +L+ +  +VLDEADR+LD  F SQ+  I+R C + 
Sbjct:   845 KGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKD 904

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328
             +QT + SAT  + + ++    L +P+ + V    +   N+ Q FV     +  +++ +L 
Sbjct:   905 KQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQ-FVEIIE-ESKKVFRLLK 962

Query:   329 LM 330
             L+
Sbjct:   963 LL 964

 Score = 40 (19.1 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query:    34 DDEMKHDNIKNRQK 47
             DD +K DNI + +K
Sbjct:    37 DDVLKRDNISSNKK 50

 Score = 40 (19.1 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query:    39 HDNIKNRQKLIGKKKQKRLAKE 60
             +DN  N ++   KKK+KR +K+
Sbjct:    59 YDNSYNEEEENKKKKKKRDSKK 80


>UNIPROTKB|Q8I416 [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 299 (110.3 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
 Identities = 70/242 (28%), Positives = 126/242 (52%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F+Q  L   +L+ +   N+     IQ  TIP  + GRD+             ++ P++  
Sbjct:   725 FYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRH 784

Query:   153 LLYK-P-RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +L++ P R++     ++L PTREL +QV    +   +  ++E+    GG  +  Q  VL+
Sbjct:   785 VLHQEPLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLK 844

Query:   211 KCPDIVIATPGRLLDHL--HNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             K  +I++ TPGR++D L   N    +L+ +  +VLDEADR+LD  F SQ+  I+R C + 
Sbjct:   845 KGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKD 904

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328
             +QT + SAT  + + ++    L +P+ + V    +   N+ Q FV     +  +++ +L 
Sbjct:   905 KQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQ-FVEIIE-ESKKVFRLLK 962

Query:   329 LM 330
             L+
Sbjct:   963 LL 964

 Score = 40 (19.1 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query:    34 DDEMKHDNIKNRQK 47
             DD +K DNI + +K
Sbjct:    37 DDVLKRDNISSNKK 50

 Score = 40 (19.1 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query:    39 HDNIKNRQKLIGKKKQKRLAKE 60
             +DN  N ++   KKK+KR +K+
Sbjct:    59 YDNSYNEEEENKKKKKKRDSKK 80


>UNIPROTKB|Q3SZ40 [details] [associations]
            symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
            species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
            GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
            IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
            ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
            Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
            HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
            NextBio:20868656 Uniprot:Q3SZ40
        Length = 546

 Score = 301 (111.0 bits), Expect = 3.8e-26, P = 3.8e-26
 Identities = 83/259 (32%), Positives = 132/259 (50%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             E+  F  M L   LL+A+  L +  PT IQ   IP+AL G+D+             + +P
Sbjct:     5 ESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64

Query:   149 ILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEVK 203
             +L+ LL++    P  +Q  R LVLVPT+EL  Q   + +QLA + + ++ ++ V   E  
Sbjct:    65 MLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDS 124

Query:   204 V-QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD-IEVLVLDEADRMLDEHFASQMKEI 261
               Q +VL + PD+V+ TP R+L+HL    +  L D +E+LV+DEAD +    F  ++K +
Sbjct:   125 ASQRAVLMEKPDVVVGTPSRILNHLQQD-NLKLRDSMELLVVDEADLLFSFGFEEELKSL 183

Query:   262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEV 321
             +    R  Q  L SAT  + V  L  + L  PV + +  +     +  Q+F      +E 
Sbjct:   184 LCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEED 243

Query:   322 R---LYNVLGLMLLRENCL 337
             +   LY +L L L+R   L
Sbjct:   244 KFLLLYALLKLSLIRGKSL 262


>MGI|MGI:1277172 [details] [associations]
            symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
            GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
            OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
            IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
            ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
            PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
            Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
            InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
            CleanEx:MM_DDX56 Genevestigator:Q9D0R4
            GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
        Length = 546

 Score = 301 (111.0 bits), Expect = 3.8e-26, P = 3.8e-26
 Identities = 85/260 (32%), Positives = 131/260 (50%)

Query:    88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFML 147
             +E   F  M L   LL+A+  L +  PT IQ   IP+AL G+D+             + +
Sbjct:     4 QEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAI 63

Query:   148 PILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEV 202
             P+L+ LL+K    P  +Q  R LVLVPT+EL  Q   + +QLA + + +V ++ V   E 
Sbjct:    64 PMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVSAAED 123

Query:   203 KV-QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD-IEVLVLDEADRMLDEHFASQMKE 260
                Q +VL + PD+V+ TP R+L HL    +  L D +E+LV+DEAD +    F  ++K 
Sbjct:   124 SASQRAVLMEKPDVVVGTPSRVLSHLQQN-TLKLRDSLELLVVDEADLLFSFGFEDELKS 182

Query:   261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
             ++    R  Q  L SAT  + V  L  + L  PV + +  +     +  Q+F      +E
Sbjct:   183 LLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEE 242

Query:   321 VR---LYNVLGLMLLRENCL 337
              +   LY +L L L+R   L
Sbjct:   243 DKFLLLYALLKLSLIRGKAL 262


>UNIPROTKB|Q9NY93 [details] [associations]
            symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
            CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
            EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
            EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
            IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
            RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
            SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
            DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
            DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
            GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
            HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
            PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
            GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
            CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
            Uniprot:Q9NY93
        Length = 547

 Score = 301 (111.0 bits), Expect = 3.9e-26, P = 3.9e-26
 Identities = 86/259 (33%), Positives = 131/259 (50%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             E   F  M L   LL+A+  L +  PT IQ   IP+AL G+D+             + +P
Sbjct:     5 EALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIP 64

Query:   149 ILERLLYK----PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS-VGGLEVK 203
             +L+ LL++    P  +Q  R LVLVPT+EL  Q   + +QLA + + +V ++ V   E  
Sbjct:    65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDS 124

Query:   204 V-QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD-IEVLVLDEADRMLDEHFASQMKEI 261
             V Q +VL + PD+V+ TP R+L HL    S  L D +E+LV+DEAD +    F  ++K +
Sbjct:   125 VSQRAVLMEKPDVVVGTPSRILSHLQQD-SLKLRDSLELLVVDEADLLFSFGFEEELKSL 183

Query:   262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEV 321
             +    R  Q  L SAT  + V  L  + L  PV + +  +     +  Q+F      +E 
Sbjct:   184 LCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEED 243

Query:   322 R---LYNVLGLMLLRENCL 337
             +   LY +L L L+R   L
Sbjct:   244 KFLLLYALLKLSLIRGKSL 262


>UNIPROTKB|Q485I3 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 296 (109.3 bits), Expect = 6.3e-26, P = 6.3e-26
 Identities = 79/242 (32%), Positives = 128/242 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  ++L + L+K + +L Y   TPIQA T+P  L G+D+             F L +L 
Sbjct:    11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLN 70

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLR 210
             +L  K    Q+   +V+ PTREL  QV +  R+LA+   ++++    GG     Q   L 
Sbjct:    71 KLEVKKFRIQS---MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLE 127

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                 +++ TPGRL +H+    +  L ++ +LVLDEADRML+  F + +  I+      RQ
Sbjct:   128 HGAHVIVGTPGRLEEHVIKG-TLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQ 186

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSAT  D +  +    +T PV V + ++ + +  + Q+F    N D+ RL + L L+
Sbjct:   187 TLLFSATFPDQIKSISESIMTDPVMVKIASSEDQS-TISQKFFKVGNDDD-RL-DALRLL 243

Query:   331 LL 332
             LL
Sbjct:   244 LL 245


>TIGR_CMR|CPS_1540 [details] [associations]
            symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 296 (109.3 bits), Expect = 6.3e-26, P = 6.3e-26
 Identities = 79/242 (32%), Positives = 128/242 (52%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             +F  ++L + L+K + +L Y   TPIQA T+P  L G+D+             F L +L 
Sbjct:    11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLN 70

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLR 210
             +L  K    Q+   +V+ PTREL  QV +  R+LA+   ++++    GG     Q   L 
Sbjct:    71 KLEVKKFRIQS---MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLE 127

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
                 +++ TPGRL +H+    +  L ++ +LVLDEADRML+  F + +  I+      RQ
Sbjct:   128 HGAHVIVGTPGRLEEHVIKG-TLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQ 186

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLM 330
             T+LFSAT  D +  +    +T PV V + ++ + +  + Q+F    N D+ RL + L L+
Sbjct:   187 TLLFSATFPDQIKSISESIMTDPVMVKIASSEDQS-TISQKFFKVGNDDD-RL-DALRLL 243

Query:   331 LL 332
             LL
Sbjct:   244 LL 245


>TIGR_CMR|GSU_0522 [details] [associations]
            symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
            RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
            KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
            BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
        Length = 443

 Score = 294 (108.6 bits), Expect = 6.8e-26, P = 6.8e-26
 Identities = 72/242 (29%), Positives = 125/242 (51%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             F  +NL   +++ +    +   TPIQ  T+P++L G+D+             F++ +  +
Sbjct:     3 FADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTK 62

Query:   153 LLYKPR--DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             LL   R  + ++ R ++L PTREL VQ+ +  + L       +    GG++   Q++ L+
Sbjct:    63 LLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALK 122

Query:   211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR--T 268
             +  D+V+ TPGRL+D+L     +SL +IE+LV+DEADRM D  F + ++ I+R       
Sbjct:   123 EGADVVVGTPGRLIDYLKQKV-YSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDK 181

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328
             RQ ++FSAT+   V +L    +  P +V V      A  + Q        ++  L  +LG
Sbjct:   182 RQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPL--LLG 239

Query:   329 LM 330
             L+
Sbjct:   240 LL 241


>UNIPROTKB|E2R4Z9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
        Length = 569

 Score = 299 (110.3 bits), Expect = 7.5e-26, P = 7.5e-26
 Identities = 72/201 (35%), Positives = 106/201 (52%)

Query:   111 YIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQNTRVLVLVP 170
             Y  PTPIQ   IPV LLGRD+             F+LP++ R L    + +    L+L P
Sbjct:   224 YEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALC---ESKTPSALILTP 280

Query:   171 TRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
             TREL +Q+    ++L      ++  L VGGL +  Q   LR+   ++IATPGRLLD +  
Sbjct:   281 TRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQ 340

Query:   230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289
             + S  L  I+++V+DEAD ML   F  Q+ +I+       QT+L SAT+  ++  L S  
Sbjct:   341 S-SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQL 399

Query:   290 LTRPVRVFVDNNHEVALNLRQ 310
             L  PVR+     +    ++RQ
Sbjct:   400 LHNPVRIITGEKNLPCSSVRQ 420


>TAIR|locus:2037416 [details] [associations]
            symbol:RCF1 "regulator of CBF gene expression 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
            RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
            ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
            EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
            KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
            TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
            ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
            Uniprot:Q8H0U8
        Length = 1166

 Score = 282 (104.3 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
 Identities = 78/241 (32%), Positives = 116/241 (48%)

Query:    93 FHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILER 152
             +HQ  L+  +L  +  LNY  P PIQ   +P+ + GRD              F+LP+L  
Sbjct:   531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 590

Query:   153 LLYKPRDDQNTRV--LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
             +  +P  +       LV+ PTREL  Q++   R+ ++   +      GG  V  Q S L+
Sbjct:   591 IKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELK 650

Query:   211 KCPDIVIATPGRLLDHLHNTPS--FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             +  +IV+ TPGR++D L  +     +L  +  LV+DEADRM D  F  Q+  II+     
Sbjct:   651 RGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPE 710

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-VRLYNVL 327
             RQT+LFSAT    V  L    L +PV + V     V  ++ Q        D  +RL  +L
Sbjct:   711 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 770

Query:   328 G 328
             G
Sbjct:   771 G 771

 Score = 51 (23.0 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAK 59
             DD++K D +K R+K  G++K+K   K
Sbjct:   211 DDDVKRD-LKRRRKEGGERKEKEREK 235

 Score = 40 (19.1 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 7/32 (21%), Positives = 20/32 (62%)

Query:    34 DDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQ 65
             +D+   D+ + R+K   K++++R   + ++K+
Sbjct:    60 EDDYDRDDDEEREKRKEKERERRRRDKDRVKR 91


>UNIPROTKB|I3LV06 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
            Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
            Uniprot:I3LV06
        Length = 607

 Score = 299 (110.3 bits), Expect = 9.2e-26, P = 9.2e-26
 Identities = 77/209 (36%), Positives = 110/209 (52%)

Query:   103 LKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQN 162
             LK  G   Y  PTPIQ   IPV LLGRD+             F+LP++ R L + +    
Sbjct:   206 LKTAG---YEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQSKAPS- 261

Query:   163 TRVLVLVPTRELGVQVYQVTRQL-AQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPG 221
                LVL PTREL +Q+ +  ++L      +  AL VGGL    Q   LR+   ++IATPG
Sbjct:   262 --ALVLTPTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPG 319

Query:   222 RLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281
             RLLD +  + S  L +I+++V+DEAD ML   F  Q+ +++    +  QT+L SAT+   
Sbjct:   320 RLLDIMKQS-SVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTR 378

Query:   282 VNDLVSVSLTRPVRVFVDNNHEVALNLRQ 310
             +  L S  L  PVRV     +    ++RQ
Sbjct:   379 IEQLASRLLHDPVRVLAGEKNLPCPSVRQ 407


>UNIPROTKB|E2R4Y9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
        Length = 623

 Score = 299 (110.3 bits), Expect = 9.9e-26, P = 9.9e-26
 Identities = 72/201 (35%), Positives = 106/201 (52%)

Query:   111 YIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQNTRVLVLVP 170
             Y  PTPIQ   IPV LLGRD+             F+LP++ R L    + +    L+L P
Sbjct:   224 YEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALC---ESKTPSALILTP 280

Query:   171 TRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
             TREL +Q+    ++L      ++  L VGGL +  Q   LR+   ++IATPGRLLD +  
Sbjct:   281 TRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQ 340

Query:   230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289
             + S  L  I+++V+DEAD ML   F  Q+ +I+       QT+L SAT+  ++  L S  
Sbjct:   341 S-SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQL 399

Query:   290 LTRPVRVFVDNNHEVALNLRQ 310
             L  PVR+     +    ++RQ
Sbjct:   400 LHNPVRIITGEKNLPCSSVRQ 420


>UNIPROTKB|Q5ZKB9 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
            eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
            OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
            EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
            ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
            HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
            ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>UNIPROTKB|E1BDM8 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
            EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
            UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
            GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>UNIPROTKB|E2RR01 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
            RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
            KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>UNIPROTKB|P26196 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
            [GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
            "RNA-induced silencing complex" evidence=IDA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IDA]
            [GO:0000288 "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
            EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
            RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
            PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
            ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
            STRING:P26196 PhosphoSite:P26196 DMDM:116241327
            DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
            PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
            Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
            KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
            HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
            neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
            PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
            GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
            CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
            Uniprot:P26196
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>UNIPROTKB|F1SAJ5 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
            RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
            Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
            Uniprot:F1SAJ5
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>MGI|MGI:104976 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
            evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
            GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
            EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
            IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
            RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
            SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
            PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
            KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
            Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
            GermOnline:ENSMUSG00000032097 Uniprot:P54823
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>RGD|1564560 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
            species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
            complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
            body assembly" evidence=IEA;ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
            IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
            Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
            UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
        Length = 483

 Score = 295 (108.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEAD++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 295 (108.9 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 72/188 (38%), Positives = 104/188 (55%)

Query:   114 PTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILERLLYKPRDDQNTRVLVLV--PT 171
             PT IQ+AT P+   GRD+             F LP L+++L      ++ R L +V  PT
Sbjct:    96 PTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPT 155

Query:   172 RELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTP 231
             REL +Q+Y    + A+   ++VA   GG++   Q   L+    +V+ATPGRL D L N  
Sbjct:   156 RELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKD-LQNDG 213

Query:   232 SFSLSDIEVLVLDEADRMLDEHFASQMKEIIR-LCSRTRQTMLFSATMTDAVNDLVSVSL 290
             S  L  ++ LVLDEADRMLD+ F   +K+II  +    RQT++F+AT    V +L S  +
Sbjct:   214 SLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFM 273

Query:   291 TRPVRVFV 298
             T PV V +
Sbjct:   274 TSPVTVTI 281


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 78/241 (32%), Positives = 116/241 (48%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             S F   +L   ++  +    Y  PTPIQ   IP  + G D+             F LPI+
Sbjct:     2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPII 61

Query:   151 ERLLYKPRD--DQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              +      D   ++TR L+L PTREL  Q+ Q     +    ++  +  GG+  + Q   
Sbjct:    62 NKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS 121

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             +    DI++ATPGRLLD L  T   +   +EV VLDEAD MLD  F   ++ II    ++
Sbjct:   122 IELGLDILVATPGRLLD-LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS 180

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNL-RQEFVSFSNIDEVRL-YNV 326
             RQT+LFSATM   +  L    LT P ++ +     V ++L  Q        ++V L +N+
Sbjct:   181 RQTLLFSATMPAEIEILAEAILTDPTKIQI-TAETVTIDLVNQSVYHLDKSNKVPLLFNI 239

Query:   327 L 327
             L
Sbjct:   240 L 240


>DICTYBASE|DDB_G0271708 [details] [associations]
            symbol:ddx31 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
            GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
            RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
            EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
            OMA:THIQEAS Uniprot:Q869P0
        Length = 908

 Score = 302 (111.4 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 78/230 (33%), Positives = 129/230 (56%)

Query:    87 VEENSSFHQMN-----LSRPLLK-AIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXX 140
             VE++ +F  MN     LS  L++  +G + +  PT IQ A+I   L G D          
Sbjct:   198 VEKSETFSSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSG 257

Query:   141 XXXXFMLPILERLLYK--PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSV 197
                 +++P++++L  +   R D     +++ PTREL  Q+Y+  ++L + F  +   + +
Sbjct:   258 KTLSYLIPVVQKLTEQRVTRSD-GCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIM 316

Query:   198 GGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQ 257
             GG     +++ +RK  +I++ATPGRLLDHL NT SF   +I+  +LDEAD++LD  F   
Sbjct:   317 GGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKD 376

Query:   258 MKEIIRLCS---RT----RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300
             +  II L     RT    RQ +L SAT+++ ++ L S+SLT PV + +D+
Sbjct:   377 VTTIINLLDSKKRTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDS 426


>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
            symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
            KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
            CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
            IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
            Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
            InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
        Length = 739

 Score = 300 (110.7 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 73/222 (32%), Positives = 124/222 (55%)

Query:    90 NSSFHQMNLSRPLLKAIG-ALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             +++F ++NL   L+  +   LN    T +Q  TIPV + G+D              + +P
Sbjct:   153 SNTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIP 212

Query:   149 I---LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKV 204
             +   L+ +  K +       +V+VPTREL +Q +Q+ ++L + FT +   + +GG + K 
Sbjct:   213 MVQFLQAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKA 272

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             +++ LRK  +++I+TPGRL+DH+ NT S + S +  L+LDEADR+LD  F   +  I+  
Sbjct:   273 EKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNA 332

Query:   265 CSRT---RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303
              +     RQ +L SAT+T+ ++ L S+S+  PV V V    E
Sbjct:   333 LNAAGPDRQNVLLSATITEGLSRLASISMKDPVSVHVSEGSE 374


>UNIPROTKB|A4RN46 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
            "mycelium development" evidence=IEP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
            ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
            KEGG:mgr:MGG_15532 Uniprot:A4RN46
        Length = 1012

 Score = 302 (111.4 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 89/257 (34%), Positives = 128/257 (49%)

Query:    83 DAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXX 141
             D P PV++ S      L+RP+L  I  L Y  PT IQ   +PV + GRD+          
Sbjct:   372 DVPKPVQKWSL---CGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGK 428

Query:   142 XXXFMLPILERLL-YKP-RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
                F+LP+   +   +P +D++    L+L PTREL VQ+++  +   +   +    + GG
Sbjct:   429 TMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGG 488

Query:   200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS--FSLSDIEVLVLDEADRMLDEHFASQ 257
               +K Q + L++  +IV+AT GR++D L        SL     +VLDEADRM D  F  Q
Sbjct:   489 PPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQ 548

Query:   258 MKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317
             + +I       RQT+LFSATM   ++ LV   L  PV + V     VA  + Q  V    
Sbjct:   549 VMKIFANVRPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQ-IVEIR- 606

Query:   318 IDEVRLYNVLGLMLLRE 334
              DE   +N L L LL E
Sbjct:   607 -DEKSKFNRL-LELLGE 621


>SGD|S000003046 [details] [associations]
            symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
            family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
            "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
            EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
            ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
            MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
            EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
            KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
            KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
            GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
        Length = 523

 Score = 295 (108.9 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 75/219 (34%), Positives = 110/219 (50%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  ++L   +   I    +  PTPIQA   P  L G+D+             F +P + 
Sbjct:   115 SFDYLSLDSSIQAEIS--KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
              L+   +  +  +VLV+ PTREL  Q+Y     L     ++     GG+    Q   L+K
Sbjct:   173 HLM-NDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK 231

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT-RQ 270
                +V+ATPGRLLD L    S  LS +  LVLDEADRML++ F   +K IIR    + RQ
Sbjct:   232 S-QVVVATPGRLLDLLQEG-SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQ 289

Query:   271 TMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLR 309
             T++F+AT    V +L S  +  P++V + N  ++  N R
Sbjct:   290 TLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKR 328


>TAIR|locus:2074899 [details] [associations]
            symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
            RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
            SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
            GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
            GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
            PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
            GermOnline:AT3G09620 Uniprot:Q9SF41
        Length = 989

 Score = 289 (106.8 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 81/250 (32%), Positives = 123/250 (49%)

Query:    83 DAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXX 141
             D P P++    +HQ  L+  +L  +  LNY  P PIQA  +P+ + GRD           
Sbjct:   390 DVPRPIQ---FWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGK 446

Query:   142 XXXFMLPILERLLYKPRDDQNTRV--LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
                F+LP+L  +  +P  +       LV+ PTREL  Q+Y   R+ ++   +      GG
Sbjct:   447 TLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGG 506

Query:   200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS--FSLSDIEVLVLDEADRMLDEHFASQ 257
               V  Q S L++  +IV+ TPGR++D L  +     +L  +  LV+DEADRM D  F  Q
Sbjct:   507 SGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQ 566

Query:   258 MKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN----NHEVA--LNLRQE 311
             +  I++     RQT+LFSAT    V  L    L +PV + V      N ++   + +R E
Sbjct:   567 ITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPE 626

Query:   312 FVSFSNIDEV 321
                FS + E+
Sbjct:   627 SERFSRLLEL 636

 Score = 39 (18.8 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query:    37 MKHDNIKN-RQKLIGKKKQKR 56
             +K D  +  R+K  G+KKQK+
Sbjct:    88 LKRDRERREREKEKGRKKQKK 108


>SGD|S000002319 [details] [associations]
            symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
            decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
            "deadenylation-dependent decapping of nuclear-transcribed mRNA"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
            GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
            OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
            RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
            SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
            STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
            GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
            EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
            GermOnline:YDL160C Uniprot:P39517
        Length = 506

 Score = 294 (108.6 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 68/208 (32%), Positives = 111/208 (53%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + ++F    L R LL  I    +  P+PIQ   IPVA+ GRDI             F++P
Sbjct:    44 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 103

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESV 208
              LE++  KP+ ++  + L++VPTREL +Q  QV R L +   +   ++ GG  ++     
Sbjct:   104 TLEKV--KPKLNK-IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 160

Query:   209 LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
             L +   I++ TPGR+LD L +     LSD  + ++DEAD+ML   F + +++I+     T
Sbjct:   161 LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 219

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              Q++LFSAT    V + +   L +P  +
Sbjct:   220 HQSLLFSATFPLTVKEFMVKHLHKPYEI 247


>TIGR_CMR|CPS_0174 [details] [associations]
            symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
            "mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
            RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
            GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
            BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
        Length = 428

 Score = 289 (106.8 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 74/240 (30%), Positives = 123/240 (51%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             + F  +NL+  ++  + A+ + Y T IQA ++PV L G D+             F+    
Sbjct:     9 TKFADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATF 68

Query:   151 ERLLYKPRDDQNT-RVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
               LL K     N  R L++ PTREL +Q+++   ++A+ T + + +  GG   + Q   L
Sbjct:    69 HHLLQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLEL 128

Query:   210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII-RLCSRT 268
                 DI+I T GRL+D++     ++L +IEV+VLDEADRM D  F   ++ +  ++   T
Sbjct:   129 EAGVDILIGTCGRLIDYMKQG-IYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPAT 187

Query:   269 -RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVL 327
              R +MLFSAT++  V +L    +  P  V V+   +    + +E    SN D++ L   L
Sbjct:   188 ERLSMLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNEDKMTLLQTL 247


>TAIR|locus:2064844 [details] [associations]
            symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
            "mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
            nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
            [GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
            deneddylation" evidence=RCA] [GO:0042991 "transcription factor
            import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
            EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
            RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
            SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
            EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
            GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
            PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
            GermOnline:AT2G40700 Uniprot:Q7XJN0
        Length = 609

 Score = 296 (109.3 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 84/242 (34%), Positives = 127/242 (52%)

Query:    92 SFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             SF  + L   L   +   + +  PT +QA  IPV L GRD+             ++ P++
Sbjct:    30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89

Query:   151 ERLL-YKPRDDQN--TRVLVLVPTRELGVQVYQVTRQLA-QFTSVEVALSVGGLEVKVQE 206
               L  + P+ D++  T  LV+VPTREL +QVY+   +L  +F  +     +GG E K +E
Sbjct:    90 HHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG-EKKAKE 148

Query:   207 SV-LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLC 265
                LRK   I+IATPGRLLDHL NT SF   ++  ++ DEAD +L+  +  ++++II+L 
Sbjct:   149 KARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLL 208

Query:   266 SR----------------TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLR 309
                                +Q +L SAT+ D VNDL  +SL  PV + +DN  ++  NL 
Sbjct:   209 GSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNT-KLQQNLS 267

Query:   310 QE 311
              E
Sbjct:   268 IE 269


>FB|FBgn0014189 [details] [associations]
            symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
            [GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
            "polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
            spindle organization" evidence=IMP] [GO:0005875 "microtubule
            associated complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
            EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
            GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
            KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
            RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
            UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
            IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
            PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
            EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
            CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
            OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
            Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
        Length = 424

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 73/246 (29%), Positives = 132/246 (53%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   +L+AI    + +P+ +Q   IP A+LG DI             F+L  
Sbjct:    40 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 99

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P D+    VLV+  TREL  Q+ +   + +++  +V+VA+  GG+ ++  E  
Sbjct:   100 LQQL--EPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEET 157

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+   P IV+ TPGR+L  + N    +L  ++  VLDE D+ML++      ++EI R   
Sbjct:   158 LKSGTPHIVVGTPGRILALIRNK-KLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTP 216

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFS-NIDEVRLY 324
               +Q M+FSAT++  +  +    +  P+ V+VD+  ++ L+ L+Q +V+   N    +L+
Sbjct:   217 HGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLF 276

Query:   325 NVLGLM 330
              +L ++
Sbjct:   277 ELLDVL 282


>TAIR|locus:2032910 [details] [associations]
            symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
            development" evidence=IMP] [GO:0009791 "post-embryonic development"
            evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
            evidence=IMP] [GO:0006606 "protein import into nucleus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
            GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
            PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
            ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
            EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
            KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
            InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
            Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
        Length = 491

 Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
 Identities = 78/238 (32%), Positives = 115/238 (48%)

Query:    91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPIL 150
             ++F  + L+   ++    L    PTP+Q   +P  L GRD+             F LPIL
Sbjct:    58 TNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL 117

Query:   151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
              RL     D      LV+ PTREL  Q+ +  + L    ++  ++ VGG+++  Q   L 
Sbjct:   118 HRLA---EDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLV 174

Query:   211 KCPDIVIATPGRLLDHLHNTPSFS--LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRT 268
               P IVI TPGR+   L N P      S  + LVLDEADR+LD  F  +++ I +   ++
Sbjct:   175 SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKS 234

Query:   269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNV 326
             RQT+LFSATMT  +  L+  S  +          +    L Q+F+ F + D   LY V
Sbjct:   235 RQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFI-FEDKDAKELYLV 291


>POMBASE|SPCC10H11.01 [details] [associations]
            symbol:prp11 "ATP-dependent RNA helicase Prp11"
            species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
            RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
            IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
            GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
            NextBio:20800113 Uniprot:Q9P7C7
        Length = 1014

 Score = 299 (110.3 bits), Expect = 2.8e-25, P = 2.8e-25
 Identities = 84/256 (32%), Positives = 124/256 (48%)

Query:    83 DAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXX 141
             D P PV   +S+ Q  LS   +  I +L Y  PT IQA  IP    GRD+          
Sbjct:   412 DCPKPV---TSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGK 468

Query:   142 XXXFMLPILERLL-YKP-RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
                F+LP+   +   +P +  +    +++ PTREL VQ+++  +   +  ++    + GG
Sbjct:   469 TIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGG 528

Query:   200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS--FSLSDIEVLVLDEADRMLDEHFASQ 257
               +K Q + L++  +IV+ TPGR++D L        +L     LVLDEADRM D  F  Q
Sbjct:   529 APIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQ 588

Query:   258 MKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA------LNLRQE 311
             +  II      RQT+LFSAT   A+  L    L +PV + V     VA      + +R E
Sbjct:   589 VMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPE 648

Query:   312 FVSFSNIDEV--RLYN 325
                FS + E+   LYN
Sbjct:   649 ESKFSRLLELLGELYN 664


>WB|WBGene00002083 [details] [associations]
            symbol:inf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
            GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
            EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
            UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
            DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
            PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
            EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
            UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
            InParanoid:P27639 NextBio:890522 Uniprot:P27639
        Length = 402

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 73/244 (29%), Positives = 118/244 (48%)

Query:    92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPILE 151
             SF  M L   LL+ I    +  P+ IQ   I     G+D+             F + IL+
Sbjct:    30 SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89

Query:   152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
             R+     +D + + LV+ PTREL  Q+ +V   L ++ +V +   +GG  V+  +  L  
Sbjct:    90 RI---DHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA 146

Query:   212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
                +V+ TPGR+ D + N  +   S I++ VLDEAD ML   F  Q+ E+ R   +  Q 
Sbjct:   147 GIHVVVGTPGRVGDMI-NRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQV 205

Query:   272 MLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVR------LYN 325
             +L SATM   V D+ +  +  P+R+ V  +      +RQ +++    DE +      LYN
Sbjct:   206 VLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQK-DEWKFDCLCDLYN 264

Query:   326 VLGL 329
             V+ +
Sbjct:   265 VVNV 268


>FB|FBgn0036104 [details] [associations]
            symbol:CG6418 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
            GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
            UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
            STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
            KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
            InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
            NextBio:812543 Uniprot:Q9VTC1
        Length = 791

 Score = 297 (109.6 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 76/238 (31%), Positives = 115/238 (48%)

Query:    84 APPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXX 143
             +PP +  +SF        L+KA+    Y  PTPIQA  +P AL GRDI            
Sbjct:   263 SPP-KPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTA 321

Query:   144 XFMLPILERLL----YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGG 199
              F+ P+L  ++     KP D      L+L PTREL +Q+Y   ++  +  ++ V    GG
Sbjct:   322 AFIWPMLMHVMDQKQLKPGDGPIG--LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGG 379

Query:   200 LEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK 259
                  Q   L +  +I++ATPGR++D +    + +L  +  LVLDEADRM    F  Q++
Sbjct:   380 GSKWEQSKALEQGAEIIVATPGRMIDMV-KMKATNLRRVTFLVLDEADRMFHMGFEPQVR 438

Query:   260 EIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSN 317
              I       RQ ++FSAT    +  L    L+ PVR+   + +E   ++ Q    F N
Sbjct:   439 SICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPN 496


>WB|WBGene00001840 [details] [associations]
            symbol:hel-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0009790 "embryo
            development" evidence=IMP] [GO:0001703 "gastrulation with mouth
            forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
            GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
            GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
            PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
            SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
            EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
            KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
            InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
            Uniprot:Q18212
        Length = 425

 Score = 287 (106.1 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 72/243 (29%), Positives = 129/243 (53%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   +L+AIG   + +P+ +Q   IP A+LG D+             F++  
Sbjct:    40 SSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITT 99

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L++L  +P D +   V+ +  TREL  Q+ +   + +++   V+VA+  GG+ +K  E  
Sbjct:   100 LQQL--EPVDGE-VSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEER 156

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML-DEHFASQMKEIIRLCS 266
             L   CP IV+ TPGR+L  L  +    L  ++  VLDE D+M+ D      ++EI+++  
Sbjct:   157 LANDCPHIVVGTPGRMLA-LARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTP 215

Query:   267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALN-LRQEFVSFSNIDEVR-LY 324
             + +Q M+FSAT+   +  +    +  P+ V+VD+  ++ L+ L+Q +V     ++ R L 
Sbjct:   216 QQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLL 275

Query:   325 NVL 327
             N+L
Sbjct:   276 NLL 278


>UNIPROTKB|P54824 [details] [associations]
            symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
            "Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
            GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
            RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
            GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
        Length = 481

 Score = 290 (107.1 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    93 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 152

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D    + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   153 LLERLDLK-KDC--IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 209

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  I+++VLDEAD++L + F   M++II    +
Sbjct:   210 RLDDTVHVVIATPGRILDLIKKGVA-KVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPK 268

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   +++ L +P  +
Sbjct:   269 NRQILLYSATFPLSVQKFMTLHLQKPYEI 297


>UNIPROTKB|B1Q2N1 [details] [associations]
            symbol:DDX39 "ATP-dependent RNA helicase DDX39A"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
            Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 UniGene:Hs.311609
            HGNC:HGNC:17821 EMBL:AC008569 EMBL:AB254849 IPI:IPI00062206
            SMR:B1Q2N1 STRING:B1Q2N1 Ensembl:ENST00000454233
            Ensembl:ENST00000588692 UCSC:uc010dzm.1 HOVERGEN:HBG072062
            Uniprot:B1Q2N1
        Length = 267

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 70/193 (36%), Positives = 112/193 (58%)

Query:    90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLPI 149
             +S F    L   LL+AI    + +P+ +Q   IP A+LG D+             F+L  
Sbjct:    43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102

Query:   150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT-SVEVALSVGGLEVKVQESV 208
             L+++  +P + Q T VLV+  TREL  Q+ +   + +++  SV+V++  GGL +K  E V
Sbjct:   103 LQQI--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 159

Query:   209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE-HFASQMKEIIRLCS 266
             L+K CP +V+ TPGR+L  + N  SFSL +++  VLDE D+ML++      ++EI RL  
Sbjct:   160 LKKNCPHVVVGTPGRILALVRNR-SFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218

Query:   267 RTRQTMLFSATMT 279
               +Q M+FSAT++
Sbjct:   219 HEKQCMMFSATLS 231


>UNIPROTKB|E1C8R1 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
            EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
            PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
            KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
        Length = 483

 Score = 290 (107.1 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 69/209 (33%), Positives = 116/209 (55%)

Query:    89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             + + F    L R LL  I  + +  P+PIQ  +IP+AL GRDI             +++P
Sbjct:    94 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 153

Query:   149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
             +LERL  K +D  N + +V+VPTREL +QV Q+  Q+++     +V  + GG  ++    
Sbjct:   154 LLERLDLK-KD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 210

Query:   208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
              L     +VIATPGR+LD +    +  +  ++++VLDEA+++L + F   M++II    +
Sbjct:   211 RLDDTVHVVIATPGRILDLIKKGVA-KVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPK 269

Query:   268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
              RQ +L+SAT   +V   ++  L +P  +
Sbjct:   270 NRQILLYSATFPLSVQKFMNSHLQKPYEI 298


>UNIPROTKB|F8WAJ0 [details] [associations]
            symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
            IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
            Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
            Uniprot:F8WAJ0
        Length = 722

 Score = 295 (108.9 bits), Expect = 3.9e-25, P = 3.9e-25
 Identities = 78/233 (33%), Positives = 126/233 (54%)

Query:    90 NSSFHQMNLSRPLLKAIGA-LNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFMLP 148
             +++FH++ L   L+  I   L     T +Q  +IPV L GRD              + +P
Sbjct:   100 SAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIP 159

Query:   149 ILERLLY---KPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ-FTSVEVALSVGGLEVKV 204
             +++ L     K +       LVLVPTREL +Q +   ++L + FT +   + +GG + K 
Sbjct:   160 VVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS 219

Query:   205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
             +++ LRK  +I+I+TPGRL+DH+ +T +   S +  LV DEADR+LD  F   +  I+  
Sbjct:   220 EKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA 279

Query:   265 CS---RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV-DNNHEVALNLRQEFV 313
              +   + RQ +L SAT+T+ V  L  +SL  PV + V D +H+  LN + + V
Sbjct:   280 VNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHD-QLNPKDKAV 331


>FB|FBgn0010220 [details] [associations]
            symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
            melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
            GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
            PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
            ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
            EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
            CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
            OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
            Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
        Length = 521

 Score = 291 (107.5 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 75/198 (37%), Positives = 101/198 (51%)

Query:    88 EENSSFHQMNLSRP-LLKAIGALNYIYPTPIQAATIPVALLGRDIXXXXXXXXXXXXXFM 146
             +E + F  + L RP L+K +  L     TPIQ   IP  L G+D              F 
Sbjct:     4 KEANPFQILGL-RPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFA 62

Query:   147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
             LPILERL  +P    +   LVL PT EL  Q+ +      Q   V V +  GG +  V+ 
Sbjct:    63 LPILERLSEEP---VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVES 119

Query:   207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
               L + P IV+A PGRL DHL    +FS  +++ LV+DEADRML+  F   +  I R   
Sbjct:   120 QKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP 179

Query:   267 RTRQTMLFSATMTDAVND 284
             +TRQ + FSATM D + +
Sbjct:   180 KTRQNLFFSATMKDFIKE 197

WARNING:  HSPs involving 588 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      337       280   0.00082  115 3  11 22  0.47    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  838
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  23.85u 0.06s 23.91t   Elapsed:  00:00:11
  Total cpu time:  23.90u 0.06s 23.96t   Elapsed:  00:00:13
  Start:  Thu Aug 15 12:11:04 2013   End:  Thu Aug 15 12:11:17 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with Rs1 Rs1 Rs1	protein from Drosophila melanogaster	7.2e-84
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	gene_product from Danio rerio	2.4e-76
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Gallus gallus	1.3e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Bos taurus	1.7e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Uncharacterized protein	protein from Canis lupus familiaris	2.1e-75
BLAST match view associations BLAST with DDX27 DDX27 DDX27 Probable ATP-dependent RNA helicase DDX27	protein from Homo sapiens	2.1e-75
BLAST match view associations BLAST with Ddx27 Ddx27 Ddx27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein from Mus musculus	1.5e-74
BLAST match view associations BLAST with LOC100626268 LOC100626268 LOC100626268 Uncharacterized protein	protein from Sus scrofa	3.3e-70
BLAST match view associations BLAST with Y71G12B.8 Y71G12B.8 Y71G12B.8	gene from Caenorhabditis elegans	3.5e-68
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Magnaporthe oryzae 70-15	6.9e-61
BLAST match view associations BLAST with DRS1 DRS1 DRS1 Nucleolar DEAD-box protein required for ribosome assembly and function	gene from Saccharomyces cerevisiae	1.1e-57
BLAST match view associations BLAST with DRS1 DRS1 DRS1	gene_product from Candida albicans	5.9e-57
BLAST match view associations BLAST with DRS1 DRS1 DRS1 ATP-dependent RNA helicase DRS1	protein from Candida albicans SC5314	5.9e-57
BLAST match view associations BLAST with AT4G16630 AT4G16630 AT4G16630	protein from Arabidopsis thaliana	4.2e-56
BLAST match view associations BLAST with ddx27 ddx27 ddx27 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	4.3e-54
BLAST match view associations BLAST with HAS1 HAS1 HAS1	gene_product from Candida albicans	1.6e-38
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase HAS1	protein from Candida albicans SC5314	1.6e-38
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Gallus gallus	7.0e-38
BLAST match view associations BLAST with AT5G65900 AT5G65900 AT5G65900	protein from Arabidopsis thaliana	1.7e-37
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Bos taurus	3.9e-37
BLAST match view associations BLAST with HAS1 HAS1 HAS1 ATP-dependent RNA helicase	gene from Saccharomyces cerevisiae	3.9e-37
BLAST match view associations BLAST with T26G10.1 T26G10.1 T26G10.1	gene from Caenorhabditis elegans	6.3e-37
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Probable ATP-dependent RNA helicase DDX47	protein from Homo sapiens	1.3e-36
BLAST match view associations BLAST with I3L976 I3L976 I3L976 Uncharacterized protein	protein from Sus scrofa	1.3e-36
BLAST match view associations BLAST with Ddx47 Ddx47 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein from Mus musculus	1.3e-36
BLAST match view associations BLAST with DDX47 DDX47 DDX47 Uncharacterized protein	protein from Canis lupus familiaris	1.7e-36
BLAST match view associations BLAST with RRP3 RRP3 RRP3 Protein involved in rRNA processing	gene from Saccharomyces cerevisiae	4.4e-36
BLAST match view associations BLAST with AT3G18600 AT3G18600 AT3G18600	protein from Arabidopsis thaliana	5.3e-36
BLAST match view associations BLAST with ddx54 ddx54 ddx54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	gene_product from Danio rerio	7.8e-36
BLAST match view associations BLAST with zgc:112350 zgc:112350 zgc:112350	gene_product from Danio rerio	9.2e-36
BLAST match view associations BLAST with CG9253 CG9253 CG9253	protein from Drosophila melanogaster	1.9e-35
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.2e-35
BLAST match view associations BLAST with orf19.7546 orf19.7546 orf19.7546	gene_product from Candida albicans	3.1e-35
BLAST match view associations BLAST with DDX54 DDX54 DDX54 Uncharacterized protein	protein from Gallus gallus	2.9e-34
BLAST match view associations BLAST with Ddx54 Ddx54 Ddx54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein from Mus musculus	3.3e-34
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Gallus gallus	3.7e-34
BLAST match view associations BLAST with Ddx54 Ddx54 Ddx54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	gene from Rattus norvegicus	4.7e-34
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c RNA helicase, putative	gene from Plasmodium falciparum	5.0e-34
BLAST match view associations BLAST with PFB0860c PFB0860c PFB0860c DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	5.0e-34
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	5.8e-34
BLAST match view associations BLAST with CPS_0042 CPS_0042 CPS_0042 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	5.8e-34
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.0e-34
BLAST match view associations BLAST with DDX54 DDX54 DDX54 ATP-dependent RNA helicase DDX54	protein from Homo sapiens	9.2e-34
BLAST match view associations BLAST with Ddx18 Ddx18 Ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	gene from Rattus norvegicus	1.1e-33
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.5e-33
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	2.0e-33
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	2.0e-33
BLAST match view associations BLAST with helA helA helA putative RNA helicase	gene from Dictyostelium discoideum	3.0e-33
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD box family	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.2e-33
BLAST match view associations BLAST with VC_A0768 VC_A0768 VC_A0768 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Vibrio cholerae O1 biovar El Tor	3.2e-33
BLAST match view associations BLAST with ddx10 ddx10 ddx10 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	3.4e-33
BLAST match view associations BLAST with Ddx18 Ddx18 Ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein from Mus musculus	3.6e-33
BLAST match view associations BLAST with PFL2475w PFL2475w PFL2475w DEAD/DEAH box helicase, putative	gene from Plasmodium falciparum	4.1e-33
BLAST match view associations BLAST with PFL2475w PFL2475w PFL2475w DEAD/DEAH box helicase, putative	protein from Plasmodium falciparum 3D7	4.1e-33
BLAST match view associations BLAST with DDX54 DDX54 DDX54 Uncharacterized protein	protein from Bos taurus	5.1e-33
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-33
BLAST match view associations BLAST with SO_3388 SO_3388 SO_3388 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	8.5e-33
BLAST match view associations BLAST with ddx18 ddx18 ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	gene_product from Danio rerio	1.2e-32
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.4e-32
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 Putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	1.8e-32
BLAST match view associations BLAST with CPS_3215 CPS_3215 CPS_3215 putative ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	1.8e-32
BLAST match view associations BLAST with CPS_1418 CPS_1418 CPS_1418 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	2.3e-32
BLAST match view associations BLAST with Y94H6A.5 Y94H6A.5 Y94H6A.5	gene from Caenorhabditis elegans	2.9e-32
BLAST match view associations BLAST with SO_1501 SO_1501 SO_1501 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	2.9e-32
BLAST match view associations BLAST with SO_1501 SO_1501 SO_1501 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.9e-32
BLAST match view associations BLAST with HCA4 HCA4 HCA4	gene_product from Candida albicans	3.4e-32
BLAST match view associations BLAST with DDX54 DDX54 DDX54 ATP-dependent RNA helicase DDX54	protein from Homo sapiens	3.7e-32
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor str. N16961	3.7e-32
BLAST match view associations BLAST with CPS_4097 CPS_4097 CPS_4097 ATP-dependent RNA helicase SrmB	protein from Colwellia psychrerythraea 34H	3.7e-32
BLAST match view associations BLAST with VC_A0204 VC_A0204 VC_A0204 ATP-dependent RNA helicase RhlE	protein from Vibrio cholerae O1 biovar El Tor	3.7e-32
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	3.9e-32
BLAST match view associations BLAST with PFF1500c PFF1500c PFF1500c DEAD/DEAH box ATP-dependent RNA helicase, putative	protein from Plasmodium falciparum 3D7	3.9e-32
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	4.7e-32
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Canis lupus familiaris	6.0e-32
BLAST match view associations BLAST with DBP10 DBP10 DBP10 Putative ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	6.2e-32
BLAST match view associations BLAST with DDX18 DDX18 DDX18 Uncharacterized protein	protein from Bos taurus	7.8e-32
BLAST match view associations BLAST with F1MSX0 F1MSX0 F1MSX0 Uncharacterized protein	protein from Bos taurus	8.0e-32
BLAST match view associations BLAST with B0511.6 B0511.6 B0511.6	gene from Caenorhabditis elegans	9.6e-32
BLAST match view associations BLAST with GSU_0491 GSU_0491 GSU_0491 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	9.8e-32
BLAST match view associations BLAST with F1SV16 F1SV16 F1SV16 Uncharacterized protein	protein from Sus scrofa	1.3e-31
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	1.3e-31
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.3e-31
BLAST match view associations BLAST with DDX18 DDX18 DDX18 ATP-dependent RNA helicase DDX18	protein from Homo sapiens	1.7e-31
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	2.0e-31
BLAST match view associations BLAST with AT5G60990 AT5G60990 AT5G60990	protein from Arabidopsis thaliana	2.0e-31
BLAST match view associations BLAST with ddx10 ddx10 ddx10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	gene_product from Danio rerio	2.1e-31
BLAST match view associations BLAST with ddx47 ddx47 ddx47 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.2e-31
BLAST match view associations BLAST with DDX49 DDX49 DDX49 Uncharacterized protein	protein from Gallus gallus	2.6e-31