RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3143
(337 letters)
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 337 bits (866), Expect = e-117
Identities = 88/237 (37%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 66 VEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVA 125
++ E + + V E + F LS+ LK + Y T IQ TI +A
Sbjct: 2 MQVERESISR--LMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLA 59
Query: 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQ 184
L G+D+ G A TG+GKT AF++P+LE L + VL++ PTREL Q ++V R+
Sbjct: 60 LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK 119
Query: 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244
+ + L +GG ++K + + +I++ TPGRLL H+ T SF +D+++LVLD
Sbjct: 120 VGKNHDFSAGLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLD 178
Query: 245 EADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNN 301
EADR+LD FA M +I + RQT+LFSAT T +V DL +SL P V+V
Sbjct: 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 330 bits (847), Expect = e-114
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 7/264 (2%)
Query: 37 MKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDAPPVEENSSFHQM 96
M H + + +G + + K E+ E E++SF +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVP---SLPLGLTGAFEDTSFASL 57
Query: 97 N--LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLL 154
++ LKAI + + T IQ +I L GRD+ A TG+GKT AF++P +E ++
Sbjct: 58 CNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIV 117
Query: 155 -YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCP 213
+ T VL+L PTREL +Q + V ++L L +GG + L
Sbjct: 118 KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI 177
Query: 214 DIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTML 273
+I++ATPGRLLDH+ NTP F +++ LV+DEADR+LD F ++K+II+L RQTML
Sbjct: 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTML 237
Query: 274 FSATMTDAVNDLVSVSLTR-PVRV 296
FSAT T V DL +SL + P+ V
Sbjct: 238 FSATQTRKVEDLARISLKKEPLYV 261
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 329 bits (845), Expect = e-114
Identities = 97/237 (40%), Positives = 137/237 (57%), Gaps = 3/237 (1%)
Query: 64 KQVEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIP 123
+ + + EE++ E + EE +F + ++ L +A L + PT IQ IP
Sbjct: 16 ENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIP 75
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
+AL GRDI G A TG+GKT AF LPIL LL P+ LVL PTREL Q+ +
Sbjct: 76 LALQGRDIIGLAETGSGKTGAFALPILNALLETPQ---RLFALVLTPTRELAFQISEQFE 132
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVL 243
L V+ A+ VGG++ Q L K P I+IATPGRL+DHL NT F+L ++ LV+
Sbjct: 133 ALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192
Query: 244 DEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300
DEADR+L+ F +++ +I+++ R R+T LFSATMT V L +L PV+ V +
Sbjct: 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 260 bits (666), Expect = 7e-83
Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 19/308 (6%)
Query: 25 DAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDA 84
D D +++N + + + ++E + + +++
Sbjct: 6 DGNRDQRNFGRNQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNS 65
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKT 142
V +S + L + + KAI + + TP+Q TI L D+ A TGTGKT
Sbjct: 66 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKT 125
Query: 143 AAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFT----SVEVALSV 197
AF++PI + L+ D Q + +++ PTR+L +Q+ +++ V
Sbjct: 126 FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLV 185
Query: 198 GGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFAS 256
GG + + + + K P+IVIATPGRL+D L + ++ VLDEADR+L+ F
Sbjct: 186 GGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRD 245
Query: 257 QMKEIIRLCSRTR-------QTMLFSATMTDAVNDLVSVSLTRPVRVFVD----NNHEVA 305
++ I + + +T+LFSAT+ D V L + + + +F+D N E
Sbjct: 246 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 305
Query: 306 LNLRQEFV 313
+ Q V
Sbjct: 306 ERIDQSVV 313
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 252 bits (644), Expect = 2e-79
Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 19/251 (7%)
Query: 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGT 139
+++ V +S + L + + KAI + + TP+Q TI L D+ A TGT
Sbjct: 12 DNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGT 71
Query: 140 GKTAAFMLPILERLLYKPRDDQN-TRVLVLVPTRELGVQVYQVTRQLAQFT----SVEVA 194
GKT AF++PI + L+ D Q + +++ PTR+L +Q+ +++
Sbjct: 72 GKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACV 131
Query: 195 LSVGGLEVKVQESVLRKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
VGG + + + + K P+IVIATPGRL+D L + ++ VLDEADR+L+
Sbjct: 132 SLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 191
Query: 254 FASQMKEIIRL-------CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVD----NNH 302
F ++ I + + +T+LFSAT+ D V L + + + +F+D N
Sbjct: 192 FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251
Query: 303 EVALNLRQEFV 313
E + Q V
Sbjct: 252 EAHERIDQSVV 262
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 236 bits (605), Expect = 4e-78
Identities = 84/207 (40%), Positives = 111/207 (53%), Gaps = 3/207 (1%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILE 151
F L +L+A+ PTPIQAA +P+AL G+D+ G A TGTGKT AF LPI E
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 152 RLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRK 211
RL + R LVL PTREL +QV +A ++V GG Q+ L +
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLR 119
Query: 212 CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQT 271
D V+ATPGR LD+L LS +EV VLDEAD ML F +++ ++ +RQT
Sbjct: 120 GADAVVATPGRALDYL-RQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178
Query: 272 MLFSATMTDAVNDLVSVSLTRPVRVFV 298
+LFSAT+ L + PV + V
Sbjct: 179 LLFSATLPSWAKRLAERYMKNPVLINV 205
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 239 bits (612), Expect = 2e-76
Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 9/266 (3%)
Query: 67 EAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL 126
+E + K FE + V+ +F M L LL+ I A + P+ IQ I +
Sbjct: 13 RKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII 72
Query: 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186
GRD+ + +GTGKTA F + +L+ L + R+ Q L+L PTREL VQ+ + L
Sbjct: 73 KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ---ALILAPTRELAVQIQKGLLALG 129
Query: 187 QFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246
+ +V+ +GG V L +V TPGR+ D + S I++LVLDEA
Sbjct: 130 DYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI-RRRSLRTRAIKMLVLDEA 188
Query: 247 DRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL 306
D ML++ F Q+ ++ R Q +L SAT+ + ++ + +T P+R+ V +
Sbjct: 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLE 248
Query: 307 NLRQEFVSFSNIDE-----VRLYNVL 327
++Q FV+ + LY+ L
Sbjct: 249 GIKQFFVAVEREEWKFDTLCDLYDTL 274
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 238 bits (609), Expect = 4e-76
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFML 147
+ ++F L R LL I + P+PIQ IPVA+ GRDI A GTGKTAAF++
Sbjct: 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVI 77
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
P LE++ K Q L++VPTREL +Q QV R L + + ++ GG ++
Sbjct: 78 PTLEKVKPKLNKIQ---ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 134
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L + I++ TPGR+LD LSD + ++DEAD+ML F + +++I+
Sbjct: 135 RLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 193
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL-NLRQEFV 313
T Q++LFSAT V + + L +P + + E+ L + Q +
Sbjct: 194 THQSLLFSATFPLTVKEFMVKHLHKPYEINLME--ELTLKGITQYYA 238
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 231 bits (591), Expect = 2e-75
Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 16/228 (7%)
Query: 82 EDAP-PVEENSSFHQM----NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAA 136
D P P+ +F Q+ ++ LL+ I + PTPIQ IPV L GR++ A
Sbjct: 18 TDLPDPIA---TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAP 74
Query: 137 TGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALS 196
TG+GKT AF +PIL +L R L++ PTREL Q+++ ++++ T + +
Sbjct: 75 TGSGKTLAFSIPILMQLKQPANK--GFRALIISPTRELASQIHRELIKISEGTGFRIHMI 132
Query: 197 VGGLEVKVQESV-LRKCPDIVIATPGRLLDHLH-NTPSFSLSDIEVLVLDEADRMLDEH- 253
+ K DI++ TP RL+ L + P L+ +E LV+DE+D++ ++
Sbjct: 133 HKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192
Query: 254 --FASQMKEIIRLCSRT-RQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
F Q+ I C+ + +FSAT V ++L + V +
Sbjct: 193 TGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSI 240
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 228 bits (585), Expect = 7e-75
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+ F + +++AI L + PT IQ IP AL G + G + TGTGKT A++LP
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP 61
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSV----GGLEVKV 204
I+E++ + + Q ++ PTREL Q+Y T ++ +F + + GG + +
Sbjct: 62 IMEKIKPERAEVQ---AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK 118
Query: 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
L P IVI TPGR+ D + + + +LV+DEAD MLD F + + +I
Sbjct: 119 ALEKLNVQPHIVIGTPGRINDFI-REQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 177
Query: 265 CSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNH 302
+ Q ++FSAT+ + + + + P V V +H
Sbjct: 178 MPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEHH 215
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 228 bits (584), Expect = 4e-74
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
D +F ++ L + I +Y PTPIQ IP L RDI CA TG+GK
Sbjct: 14 PDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGK 73
Query: 142 TAAFMLPILERLLYKPRDDQNT------RVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
TAAF++PI+ L+ + + Q + L+L PTREL +Q+ +++ + T + +
Sbjct: 74 TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV 133
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
GG + Q ++ +++ATPGRL+D + SL + +VLDEADRMLD F
Sbjct: 134 VYGGADTHSQIREVQMGCHLLVATPGRLVDFI-EKNKISLEFCKYIVLDEADRMLDMGFE 192
Query: 256 SQMKEIIRLC----SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
Q+++II RQT++FSAT + L + L + + V
Sbjct: 193 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 225 bits (577), Expect = 9e-74
Identities = 75/209 (35%), Positives = 120/209 (57%), Gaps = 5/209 (2%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+ + F L R LL I + + P+PIQ +IP+AL GRDI A GTGK+ A+++P
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQES 207
+LERL K + Q +V+VPTREL +QV Q+ Q+++ +V + GG ++
Sbjct: 61 LLERLDLKKDNIQ---AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L +VIATPGR+LD + + ++++VLDEAD++L + F M++II +
Sbjct: 118 RLDDTVHVVIATPGRILDLI-KKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
RQ +L+SAT +V ++ L +P +
Sbjct: 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 232 bits (593), Expect = 1e-73
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 10/250 (4%)
Query: 83 DAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKT 142
+ F M L LL+ + + P+ IQ I + G D+ A +GTGKT
Sbjct: 13 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKT 72
Query: 143 AAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEV 202
F + L+R+ + Q L+L PTREL +Q+ +V LA ++V +GG
Sbjct: 73 GTFSIAALQRIDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSF 129
Query: 203 KVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
LR IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I
Sbjct: 130 VEDAEGLRD-AQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 263 RLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-- 320
L T Q +L SATM + V ++ + + PVR+ V + ++Q +V+ +
Sbjct: 188 TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247
Query: 321 ---VRLYNVL 327
LY+ +
Sbjct: 248 ECLTDLYDSI 257
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 230 bits (590), Expect = 5e-73
Identities = 81/267 (30%), Positives = 125/267 (46%), Gaps = 10/267 (3%)
Query: 67 EAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVAL 126
+ + + E ++ E SF MNLS LL+ I A + P+ IQ I +
Sbjct: 16 RSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI 75
Query: 127 LGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLA 186
G D+ A +GTGKTA F + IL+++ + Q LVL PTREL Q+ +V L
Sbjct: 76 KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ---ALVLAPTRELAQQIQKVVMALG 132
Query: 187 QFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDE 245
+ +GG V+ + L+ + P I++ TPGR+ D L N S I++ VLDE
Sbjct: 133 DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDE 191
Query: 246 ADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
AD ML F Q+ +I + + Q +L SATM V ++ + P+R+ V
Sbjct: 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 251
Query: 306 LNLRQEFVSFSNIDE-----VRLYNVL 327
+RQ +++ + LY L
Sbjct: 252 EGIRQFYINVEREEWKLDTLCDLYETL 278
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 224 bits (573), Expect = 7e-73
Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 7/235 (2%)
Query: 68 AEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALL 127
+ ++ + E + F + LSRP+L+ + A + P+P+Q IP+
Sbjct: 1 SMRTAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC 60
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
G D+ A +GTGKT F L+ L+ + Q +L+L PTRE+ VQ++ V +
Sbjct: 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ---ILILAPTREIAVQIHSVITAIGI 117
Query: 188 FTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEA 246
+E + +GG + ++ L+K I + +PGR+ + + I + +LDEA
Sbjct: 118 KMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPGRIKQLI-ELDYLNPGSIRLFILDEA 175
Query: 247 DRMLDE-HFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDN 300
D++L+E F Q+ I ++Q + SAT + + + ++ + P V +++
Sbjct: 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 223 bits (571), Expect = 2e-72
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 69 EEYEENEGGKEFFEDAPPVEEN-----SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIP 123
+ + G + + +E N +F MNL LL+ I A + P+ IQ I
Sbjct: 3 HHHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 62
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
+ G D+ A +GTGKTA F + IL++L + ++ Q LVL PTREL Q+ +V
Sbjct: 63 PCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVIL 119
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLV 242
L + +GG V+ + L+ + P IV+ TPGR+ D L N S I++ V
Sbjct: 120 ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKWIKMFV 178
Query: 243 LDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
LDEAD ML F Q+ EI + + + Q +L SATM V ++ + P+R+ V
Sbjct: 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 222 bits (569), Expect = 3e-72
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 5/211 (2%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFML 147
+ F M L LL+ + + P+ IQ I + G D+ A +GTGKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
L+R+ + Q L+L PTREL +Q+ +V LA ++V +GG
Sbjct: 71 AALQRIDTSVKAPQ---ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 127
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
LR IV+ TPGR+ D++ F I++ +LDEAD ML F Q+ +I L
Sbjct: 128 GLRD-AQIVVGTPGRVFDNI-QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 185
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
T Q +L SATM + V ++ + + PVR+ V
Sbjct: 186 TTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 225 bits (577), Expect = 5e-72
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 11/201 (5%)
Query: 98 LSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKP 157
++ + +AI + + T +Q+ TIP+ L G+++ A TG+GKTAA+ +PILE
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 158 RDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVI 217
+ LV+ PTREL QV R + ++ +VA GG+ K Q + +R DIV+
Sbjct: 56 ----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVV 110
Query: 218 ATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
ATPGRLLD + LS E++++DEAD M + F +K I+ S + T LFSAT
Sbjct: 111 ATPGRLLDLW-SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSAT 169
Query: 278 MTDAVNDLVSVSLTRPVRVFV 298
+ + + +V +T +
Sbjct: 170 IPEEIRKVVKDFITNYEEIEA 190
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 229 bits (586), Expect = 1e-71
Identities = 84/336 (25%), Positives = 150/336 (44%), Gaps = 17/336 (5%)
Query: 3 SSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGK 62
++D D+++ ++ +E+ PD + +++++ A +
Sbjct: 2 ATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSL 61
Query: 63 LKQVEAEEYEENEGGKEFFEDAP--PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
L ++ +N E + P P+ SF ++ L LL+ + A+ + P+ IQ
Sbjct: 62 LNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQEN 121
Query: 121 TIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178
+P+ L +++ + +GTGKTAAF+L +L ++ + Q L L PT EL +Q
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---CLCLSPTYELALQT 178
Query: 179 YQVTRQLAQFTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237
+V Q+ +F +++A +V G +++ + IVI TPG +LD
Sbjct: 179 GKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235
Query: 238 IEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
I+V VLDEAD M+ Q I R+ R Q +LFSAT D+V + P +
Sbjct: 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
Query: 297 FVDNNHEVALNLRQEFVSFSNIDE-----VRLYNVL 327
+ E ++Q +V S+ DE LY +
Sbjct: 296 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 223 bits (571), Expect = 2e-70
Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 8/228 (3%)
Query: 90 NSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
+S F L LL+AI + +P+ +Q IP A+LG D+ A +G GKTA F+L
Sbjct: 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSVGGLEVKVQESV 208
L++L VLV+ TREL Q+ + + +++ V+VA+ GGL +K E V
Sbjct: 67 LQQLEPVTGQVS---VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 123
Query: 209 LRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCS 266
L+K CP IV+ TPGR+L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 124 LKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVAL-NLRQEFV 313
+Q M+FSAT++ + + + P+ +FVD+ ++ L L+Q +V
Sbjct: 183 HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV 230
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 217 bits (556), Expect = 4e-70
Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 7/240 (2%)
Query: 62 KLKQVEAEEYEENEGGKEFFEDAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
E E Y ++ + P PV +F++ N ++ I N+ PT IQA
Sbjct: 2 MRTAQEVETYRRSKEITVRGHNCPKPVL---NFYEANFPANVMDVIARQNFTEPTAIQAQ 58
Query: 121 TIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT--RVLVLVPTRELGVQV 178
PVAL G D+ G A TG+GKT +++LP + + ++P ++ LVL PTREL QV
Sbjct: 59 GWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQV 118
Query: 179 YQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238
QV + + ++ GG Q L + +I IATPGRL+D L +L
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRT 177
Query: 239 EVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
LVLDEADRMLD F Q+++I+ RQT+++SAT V L L + + +
Sbjct: 178 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 217 bits (554), Expect = 5e-70
Identities = 80/238 (33%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 66 VEAEEYEENEGGKEFFEDAP-PVEENSSFHQMNLSRP-LLKAIGALNYIYPTPIQAATIP 123
+ ++ + E P P F P LLK+I + + PTPIQ+ P
Sbjct: 1 MTCDDLKSGEK-----RLIPKPTC---RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWP 52
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT---RVLVLVPTRELGVQVYQ 180
+ L G D+ A TGTGKT ++++P L +P + +LVL PTREL + V
Sbjct: 53 IILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112
Query: 181 VTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240
+ + + ++ GG Q + K DI+IATPGRL D N S +L I
Sbjct: 113 ECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITY 170
Query: 241 LVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
LV+DEAD+MLD F Q+++I+ RQT++ SAT D V L L P+ V+V
Sbjct: 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 222 bits (567), Expect = 1e-69
Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 15/256 (5%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATG 138
+ P+ SF ++ L LL+ + A+ + P+ IQ +P+ L +++ + +G
Sbjct: 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSG 74
Query: 139 TGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTS-VEVALSV 197
TGKTAAF+L +L ++ + Q L L PT EL +Q +V Q+ +F +++A +V
Sbjct: 75 TGKTAAFVLAMLSQVEPANKYPQ---CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 198 GGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FAS 256
G +++ + IVI TPG +LD I+V VLDEAD M+
Sbjct: 132 RGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQD 188
Query: 257 QMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316
Q I R+ R Q +LFSAT D+V + P + + E ++Q +V S
Sbjct: 189 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 248
Query: 317 NIDE-----VRLYNVL 327
+ DE LY +
Sbjct: 249 SRDEKFQALCNLYGAI 264
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 215 bits (549), Expect = 2e-69
Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 7/213 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+S F L LL+AI + +P+ +Q IP A+LG D+ A +G GKTA F+L
Sbjct: 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 71
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQF-TSVEVALSVGGLEVKVQES 207
L++L VLV+ TREL Q+ + + +++ +V+VA+ GGL +K E
Sbjct: 72 TLQQLEPVTGQVS---VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 128
Query: 208 VLRK-CPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLC 265
VL+K CP IV+ TPGR+L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 129 VLKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT 187
Query: 266 SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+Q M+FSAT++ + + + P+ +FV
Sbjct: 188 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 215 bits (550), Expect = 1e-68
Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 12/302 (3%)
Query: 3 SSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGK 62
++D D+++ ++ +E+ PD + +++++ A +
Sbjct: 2 ATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSL 61
Query: 63 LKQVEAEEYEENEGGKEFFEDAP--PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
L ++ +N E + P P+ SF ++ L LL+ + A+ + P+ IQ
Sbjct: 62 LNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQEN 121
Query: 121 TIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQV 178
+P+ L +++ + +GTGKTAAF+L +L ++ + Q L L PT EL +Q
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---CLCLSPTYELALQT 178
Query: 179 YQVTRQLAQFTS-VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237
+V Q+ +F +++A +V G +++ + IVI TPG +LD
Sbjct: 179 GKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235
Query: 238 IEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
I+V VLDEAD M+ Q I R+ R Q +LFSAT D+V + P +
Sbjct: 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
Query: 297 FV 298
+
Sbjct: 296 KL 297
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 214 bits (548), Expect = 3e-67
Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 88 EENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFM 146
E +F+++NLS +L AI + PT IQ IP+ L +I A TG+GKTA+F
Sbjct: 3 VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFA 62
Query: 147 LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQE 206
+P++E + ++ ++L PTREL +QV L ++++A GG + Q
Sbjct: 63 IPLIELV----NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 118
Query: 207 SVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCS 266
L+ +IV+ TPGR+LDH+ N + +L +++ +LDEAD ML+ F +++I+ C+
Sbjct: 119 KALKN-ANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176
Query: 267 RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
+ ++ +LFSATM + +L + + ++ N+ Q +V
Sbjct: 177 KDKRILLFSATMPREILNLAKKYMGDYSFIKA----KINANIEQSYV 219
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 216 bits (553), Expect = 3e-67
Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 10/253 (3%)
Query: 82 EDAP-PVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
D P P++ F +L ++ + Y PTPIQ +IPV GRD+ CA TG+G
Sbjct: 49 SDVPQPIQ---HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSG 105
Query: 141 KTAAFMLPILERLLYKPRDDQNTR--VLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVG 198
KTAAF+LPIL +LL P + + R V+++ PTREL +Q++ R+ A + +++ + G
Sbjct: 106 KTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG 165
Query: 199 GLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQM 258
G + Q + + +VIATPGRLLD + + + D +VLDEADRMLD F+ M
Sbjct: 166 GTSFRHQNECITRGCHVVIATPGRLLDFV-DRTFITFEDTRFVVLDEADRMLDMGFSEDM 224
Query: 259 KEIIRLCSRT--RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFS 316
+ I+ + QT++FSAT + + + L V V + +++Q +
Sbjct: 225 RRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN 284
Query: 317 NID-EVRLYNVLG 328
+L +L
Sbjct: 285 KYAKRSKLIEILS 297
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 215 bits (549), Expect = 7e-67
Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 23/248 (9%)
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAA 144
P +E SF + + ++ I Y PTP+Q IP+ RD+ CA TG+GKTAA
Sbjct: 12 PHIE---SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68
Query: 145 FMLPILERLLYKPRDDQNTR---------------VLVLVPTRELGVQVYQVTRQLAQFT 189
F+LPIL ++ + LVL PTREL VQ+Y+ R+ + +
Sbjct: 69 FLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS 128
Query: 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM 249
V + GG ++ Q L + +++ATPGRL+D + L + LVLDEADRM
Sbjct: 129 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM-ERGKIGLDFCKYLVLDEADRM 187
Query: 250 LDEHFASQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVA 305
LD F Q++ I+ + R TM+FSAT + L L + + V +
Sbjct: 188 LDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS 247
Query: 306 LNLRQEFV 313
N+ Q+ V
Sbjct: 248 ENITQKVV 255
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 212 bits (541), Expect = 6e-66
Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 16/244 (6%)
Query: 92 SFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLG--RDICGCAATGTGKTAAFMLPI 149
SF ++ L+ LLK I A+ + P+ IQ +P+ L R++ + +GTGKTAAF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
L R+ + Q + L P+REL Q +V +++ +FT + L V K ++
Sbjct: 66 LTRVNPEDASPQ---AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQIN- 121
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRT 268
+++ TPG +LD + L I++ VLDEAD MLD+ Q + R +
Sbjct: 122 ---AQVIVGTPGTVLDLM-RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177
Query: 269 RQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE-----VRL 323
Q +LFSAT DAV + + + N ++Q ++ N + L
Sbjct: 178 TQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL 237
Query: 324 YNVL 327
Y ++
Sbjct: 238 YGLM 241
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 209 bits (534), Expect = 1e-63
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 16/219 (7%)
Query: 117 IQAATIPVALLG--RDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174
IQ +P+ L R++ G + +GTGKTAAF L +L R+ Q + L P+REL
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ---AICLAPSREL 201
Query: 175 GVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFS 234
Q+ V ++ ++T V+ A + + IVI TPG ++D +
Sbjct: 202 ARQIMDVVTEMGKYTEVKTAFGIKD----SVPKGAKIDAQIVIGTPGTVMDLM-KRRQLD 256
Query: 235 LSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRP 293
DI+V VLDEAD MLD+ Q I L R Q +LFSAT ++ V
Sbjct: 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA 316
Query: 294 VRVFVDNNHEVALNLRQEFVSFSNIDE-----VRLYNVL 327
+ + ++Q ++ + + V LY +L
Sbjct: 317 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 195 bits (497), Expect = 3e-59
Identities = 28/204 (13%), Positives = 60/204 (29%), Gaps = 14/204 (6%)
Query: 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK 156
N T Q + G+ A TG GKT M+ L
Sbjct: 5 NEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--- 61
Query: 157 PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKC---- 212
+ + ++ PT L Q + ++LA V++ ++ + +E +
Sbjct: 62 ---RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDD 117
Query: 213 PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTM 272
I++ + + + S + + +D+ D +L ++
Sbjct: 118 YHILVFSTQFVSKNR---EKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 174
Query: 273 LFSATMTDAVNDLVSVSLTRPVRV 296
FS + + + V
Sbjct: 175 AFSTIKQGKIYERPKNLKPGILVV 198
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 97.2 bits (241), Expect = 1e-22
Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 8/179 (4%)
Query: 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169
+ I P Q + TG GKT M+ RL +VL+L
Sbjct: 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGG-----KVLMLA 59
Query: 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
PT+ L +Q + R+L ++ G + + + +++ATP + + L
Sbjct: 60 PTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-KVIVATPQTIENDLLA 118
Query: 230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288
SL D+ ++V DEA R + + + + ++ + +A+ ++ V
Sbjct: 119 G-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV 176
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 77.2 bits (190), Expect = 8e-17
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 125 ALLGRDICGCAATGTGKTA-AFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTR 183
AL G++I C TG+GKT A + + L K + + +V+VLV L Q+++
Sbjct: 45 ALEGKNIIICLPTGSGKTRVAVYI-AKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 103
Query: 184 QLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS-----FSLSDI 238
Q V G ++K+ + K DI+I+T L + L N + LSD
Sbjct: 104 QPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDF 163
Query: 239 EVLVLDEADRMLDEHFASQMKEIIR 263
++++DE E I+R
Sbjct: 164 SLIIIDECHHTNKEA---VYNNIMR 185
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 69.9 bits (170), Expect = 2e-13
Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 5/191 (2%)
Query: 125 ALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQ 184
A G++ CA TG GKT +L L K Q +V+ + Q V +
Sbjct: 16 AKKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPCGQKGKVVFFANQIPVYEQQATVFSR 74
Query: 185 LAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLD 244
+ +A G V + + DI+I TP L+++L+N SLS +++ D
Sbjct: 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFD 134
Query: 245 EADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHE 303
E H + M + + L + V V + + + +
Sbjct: 135 ECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVGVGDAKTAEEAMQHICK 191
Query: 304 VALNLRQEFVS 314
+ L ++
Sbjct: 192 LCAALDASVIA 202
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 70.0 bits (170), Expect = 2e-13
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 6/170 (3%)
Query: 110 NYIYPT----PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRV 165
+Y Q A+ G++ CA TG GKT +L L K Q +V
Sbjct: 6 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKV 64
Query: 166 LVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLD 225
+ + Q V + + V G V + + DI+I TP L++
Sbjct: 65 VFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 226 HLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLF 274
+L SLS +++ DE +H + M + L
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP 174
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 69.6 bits (169), Expect = 4e-13
Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 5/229 (2%)
Query: 25 DAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDA 84
D E + +L ++ + ++ + E + E E
Sbjct: 164 DKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPD 223
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAA 144
+ EN + +P Q A+ G++ CA TG+GKT
Sbjct: 224 DNLSENLGSAAEGIGKPPPVY----ETKKARSYQIELAQPAINGKNALICAPTGSGKTFV 279
Query: 145 FMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
+L + +V+ L + Q V + + V G V
Sbjct: 280 SILICEHHF-QNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338
Query: 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
+ + DI++ TP L++ + SLS +++ DE H
Sbjct: 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 67.7 bits (164), Expect = 1e-12
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 2/174 (1%)
Query: 107 GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVL 166
GA+ Q A+ G++ CA TG+GKT +L + +V+
Sbjct: 1 GAMETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHF-QNMPAGRKAKVV 59
Query: 167 VLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDH 226
L + Q V + + V G V + + DI++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 227 LHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTMLFSATMT 279
+ SLS +++ DE H + M + + + +T
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLT 173
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 66.5 bits (161), Expect = 3e-12
Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 6/240 (2%)
Query: 25 DAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDA 84
D E + +L ++ + ++ + E + E E
Sbjct: 164 DKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPD 223
Query: 85 PPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAA 144
+ EN + +P Q A+ G++ CA TG+GKT
Sbjct: 224 DNLSENLGSAAEGIGKPPPVY----ETKKARSYQIELAQPAINGKNALICAPTGSGKTFV 279
Query: 145 FMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKV 204
+L + +V+ L + Q V + + V G V
Sbjct: 280 SILICEHHF-QNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338
Query: 205 QESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIR 263
+ + DI++ TP L++ + SLS +++ DE H + M +
Sbjct: 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 59.1 bits (143), Expect = 8e-10
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 116 PIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174
P QA + +L G++ T +GKT + ++ R+L Q + + +VP + L
Sbjct: 26 PPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL-----TQGGKAVYIVPLKAL 80
Query: 175 GVQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232
+ ++ + + VA++ G + K + DI+IAT + D L S
Sbjct: 81 ---AEEKFQEFQDWEKIGLRVAMATGDYDSKDEW---LGKYDIIIATAEK-FDSLLRHGS 133
Query: 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDA 281
+ D+++LV DE + + ++ I+ Q + SAT+ +
Sbjct: 134 SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP 182
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 58.9 bits (142), Expect = 1e-09
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 28/169 (16%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
A TG+GK+ + Q +VLVL P+ + +++ ++
Sbjct: 239 APTGSGKSTK-VPAAYAA--------QGYKVLVLNPSVAATLGFGA---YMSKAHGIDPN 286
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ G ++ P + +T G+ L S ++++ DE D
Sbjct: 287 IRTGV------RTITTGAP-VTYSTYGKFL--ADGGC--SGGAYDIIICDECHST-DSTT 334
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSL----TRPVRVFVD 299
+ ++ ++ AT T + V +
Sbjct: 335 ILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIP 383
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 1e-09
Identities = 71/458 (15%), Positives = 133/458 (29%), Gaps = 150/458 (32%)
Query: 1 DDSSDEEGNKEDKEDNEGSEEDDVDAE--EDF---ALPDDEMKH-----DNIKNRQKLIG 50
+ + K+ E + D+ D + +D L +E+ H D + +L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 51 --KKKQKRLAK---EGKLKQ-----VEA--EEYEENEGGKEFFEDA--PPVEENSSFHQM 96
KQ+ + + E L+ + E + + + +N F +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 97 NLSR--PLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKT--AA-------- 144
N+SR P LK AL + P V + G G+GKT A
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKN------VLIDG-------VLGSGKTWVALDVCLSYKV 176
Query: 145 --------F------------MLPILERLLYK---------------------------- 156
F +L +L++LLY+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 157 -------PR-----DD-QNTRVL--------VLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
+ QN + +L+ TR QVT L+ T+ ++L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-----QVTDFLSAATTTHISL 291
Query: 196 --SVGGLEVKVQESVLRKCPDIVIAT-PGRLLDHLHNTPSFSLSDIEVLVLDEADRM--L 250
L +S+L K D P +L P LS I + D
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---P-RRLSIIAESIRDGLATWDNW 347
Query: 251 DEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLV----SVSLTRPV--RVFVDNNHEV 304
++ II L A + L S + + ++ D
Sbjct: 348 KHVNCDKLTTIIESSLNV----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 305 ALNLRQEFVSFSNIDE------VRLYNVLGLMLLRENC 336
+ + + +S +++ + + ++ + L+
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKL 439
Score = 32.9 bits (74), Expect = 0.15
Identities = 56/387 (14%), Positives = 109/387 (28%), Gaps = 134/387 (34%)
Query: 22 DDV-DAE--EDFALPDDEMKHDNIK------NRQK----LIGKKKQKRLAKEGKLKQVEA 68
+V +A+ F N+ R K + ++ + +
Sbjct: 251 LNVQNAKAWNAF----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 69 EEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPL-LKAIGAL---------NYIYPTPIQ 118
+E K ++ + P L I N+ + +
Sbjct: 301 DE------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 119 AATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK-----PRDDQNTRVLVLVPTRE 173
TI + + P R ++ P +PT
Sbjct: 355 LTTI------IESS----------LNVLEPAEYRKMFDRLSVFPPS-------AHIPTIL 391
Query: 174 LGV--------QVYQVTRQLAQFTSV-----EVALSVGGL--EVKVQ---ESVLRKCPDI 215
L + V V +L +++ V E +S+ + E+KV+ E L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR---- 447
Query: 216 VIATPGRLLDHLHNTPSFSLSDIEVLVLD---------------EADRM-------LDEH 253
++DH + +F D+ LD +RM LD
Sbjct: 448 ------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 254 FASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFV 313
F Q K IR S ++ + + L + + ++ +N L +
Sbjct: 502 FLEQ-K--IR---HDSTAWNASGSILNTLQQL------KFYKPYICDNDPKYERLVNAIL 549
Query: 314 SFSNIDEVRLY-----NVLGLMLLREN 335
F E L ++L + L+ E+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAED 576
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 55.2 bits (133), Expect = 1e-08
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175
P QA + G+++ T GKT + ++ + + + L +VP R L
Sbjct: 28 PPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPLRAL- 80
Query: 176 VQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSF 233
+ ++ + + +S G + + ++ L C DI++ T + D L +
Sbjct: 81 --AGEKYESFKKWEKIGLRIGISTG--DYESRDEHLGDC-DIIVTTSEK-ADSLIRNRAS 134
Query: 234 SLSDIEVLVLDE 245
+ + LV+DE
Sbjct: 135 WIKAVSCLVVDE 146
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 53.7 bits (129), Expect = 4e-08
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 18/143 (12%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT F+ IL + R LVL PTR + ++ + F ++V
Sbjct: 15 FHPGAGKTRRFLPQILAECARRRL-----RTLVLAPTRVVLSEMKE------AFHGLDVK 63
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ I L + + + EV+++DEA +
Sbjct: 64 FHTQAFSAHGSGREV-----IDAMCHATLTYRMLEPTR--VVNWEVIIMDEAHFLDPASI 116
Query: 255 ASQMKEIIRLCSRTRQTMLFSAT 277
A++ R + T+L +AT
Sbjct: 117 AARGWAAHRARANESATILMTAT 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 5e-08
Identities = 72/470 (15%), Positives = 129/470 (27%), Gaps = 201/470 (42%)
Query: 14 EDNEGSEEDDV------DAEEDF-----------ALPDDE-----MKHDNIKN------- 44
E ++ + D V + E + L + + IKN
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 45 RQKLIGKKKQKRL---AKEGKLK-------QVEAEEY-EENEGGKEFFEDAPP-VEENSS 92
++ KK L EG + Q ++Y EE ++ ++ V +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL---RDLYQTYHVLVGDLIK 189
Query: 93 FHQMNLSRPLLKAIGALNYIYP--------------TPIQA--ATIPVAL---------- 126
F LS L++ ++ TP + +IP++
Sbjct: 190 FSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 127 -------LG------RDICGCAATGTGK---TAAFM-------------LPILERLLYKP 157
LG R ATG + TA + + L +
Sbjct: 249 YVVTAKLLGFTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-- 305
Query: 158 RDDQNTRVLVLVPTRELGVQVYQVTRQLA------QFTSVEVA-------LSVGGLEVKV 204
+GV+ Y+ + + S+E LS+ L +
Sbjct: 306 ----------------IGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQ 348
Query: 205 QESVLRKC----P---DIVIATPGRLLDHLHNTP-SFSLS----DIEVLVLD----EADR 248
+ + K P + I+ L N + +S + L L +A
Sbjct: 349 VQDYVNKTNSHLPAGKQVEIS--------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 249 MLDEH---FASQMKEIIRLCSRTRQTMLF--------SATMTDAV----NDLVSV----- 288
LD+ F S+ K + F S + A DLV
Sbjct: 401 GLDQSRIPF-SERKLKF--------SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 289 --SLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLGLMLLRENC 336
+ PV D + +LR +I E R+ + ++R
Sbjct: 452 AKDIQIPVYDTFDGS-----DLRVL---SGSISE-RIVD----CIIRLPV 488
Score = 36.6 bits (84), Expect = 0.012
Identities = 35/234 (14%), Positives = 64/234 (27%), Gaps = 82/234 (35%)
Query: 99 SRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR 158
+RPL + G+L ++ P A+ +A ++ T F
Sbjct: 6 TRPLTLSHGSLEHVLLVP--TASFFIASQLQE--QFNKILPEPTEGF-----------AA 50
Query: 159 DDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIA 218
DD+ T EL + +F V+ V +V + VL
Sbjct: 51 DDEPTTPA------EL----------VGKFLGY-VSSLVEPSKVGQFDQVLNL------- 86
Query: 219 TPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH-FASQMKEIIRLCSRTRQTML---F 274
L N + L ++ H A+++ + + ++
Sbjct: 87 ----CLTEFENC--Y-LEGNDI------------HALAAKLLQENDTTLVKTKELIKNYI 127
Query: 275 SATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDEVRLYNVLG 328
+A + RP D AL R +L + G
Sbjct: 128 TARIM----------AKRP----FDKKSNSAL-FRA-----VGEGNAQLVAIFG 161
Score = 31.2 bits (70), Expect = 0.63
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 18/116 (15%)
Query: 196 SVG-GLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
G G+++ + + R +H +T FS+ DI V++ L HF
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWN-------RADNHFKDTYGFSILDI---VINNPVN-LTIHF 1676
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV--SLTRPVRVFVDNNHEVALNL 308
+ + IR M+F T+ D + + + + + L+
Sbjct: 1677 GGEKGKRIR---ENYSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Score = 30.8 bits (69), Expect = 0.75
Identities = 44/306 (14%), Positives = 102/306 (33%), Gaps = 93/306 (30%)
Query: 69 EEYEENEGGKEFFEDA-PPVEENSSFHQMNLSR--PLLKAI--GAL-------NY---IY 113
+ Y+ ++ ++ + A ++ F +++ P+ I G NY I+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNT-RVLVLVPTR 172
T + + ++I + ++ + LL Q T L L+
Sbjct: 1694 ETIVDGKLKTEKIF-KEI-------NEHSTSYTFRSEKGLLSAT---QFTQPALTLM--- 1739
Query: 173 ELGVQVYQVTRQ--LAQFTSV-------E-VAL-SVGG---LE--VKV--------QESV 208
++ + L + E AL S+ +E V+V Q +V
Sbjct: 1740 --EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 209 -----LRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIR 263
R ++ PGR+ SFS ++ +V E + ++
Sbjct: 1798 PRDELGRSNYGMIAINPGRV------AASFSQEALQYVV---------ERVGKRTGWLVE 1842
Query: 264 LC---SRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFVDNNHEVALNLRQEFVSFSNIDE 320
+ +Q + + + A++ + +V ++ +++ + S S ++E
Sbjct: 1843 IVNYNVENQQYVA-AGDL-RALDTVTNV---------LNFIKLQKIDIIELQKSLS-LEE 1890
Query: 321 VR--LY 324
V L+
Sbjct: 1891 VEGHLF 1896
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 50.9 bits (122), Expect = 4e-07
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 116 PIQAATIPVALL-GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTREL 174
P Q + LL G + + TG+GKT + I+ LL + + + P R L
Sbjct: 33 PPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL-----KNGGKAIYVTPLRAL 87
Query: 175 GVQVYQVTRQLAQFTS--VEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPS 232
+ + +VA++ G + L+ DI+I T + LD L
Sbjct: 88 ---TNEKYLTFKDWELIGFKVAMTSGDYDTDDAW--LKNY-DIIITTYEK-LDSLWRHRP 140
Query: 233 FSLSDIEVLVLDE 245
L+++ VLDE
Sbjct: 141 EWLNEVNYFVLDE 153
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 47.5 bits (112), Expect = 4e-06
Identities = 48/308 (15%), Positives = 92/308 (29%), Gaps = 32/308 (10%)
Query: 1 DDSSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKE 60
+ +E ++ K + S+ +D + + + D + + + G + L E
Sbjct: 84 KEEHEENNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVE 143
Query: 61 GKLKQVEAEEYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAA 120
K + + ++ P E L P Q
Sbjct: 144 QDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTL------------DPFQDT 191
Query: 121 TIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ 180
I G + A T GKT I + L RV+ P + L Q Y+
Sbjct: 192 AISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYR 245
Query: 181 VTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEV 240
+V L G + + ++ T L L+ + ++
Sbjct: 246 ELLAEFG----DVGLMTGDITINPDA-------GCLVMTTEILRSMLYRGSEV-MREVAW 293
Query: 241 LVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM--TDAVNDLVSVSLTRPVRVFV 298
++ DE M D+ +E I L + + SAT+ + + ++P +
Sbjct: 294 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353
Query: 299 DNNHEVAL 306
N L
Sbjct: 354 TNFRPTPL 361
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 46.4 bits (110), Expect = 8e-06
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 28/148 (18%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + I+ L + R L+L PTR + + E+
Sbjct: 26 LHPGAGKTKRILPSIVREAL-----LRRLRTLILAPTRVV---------------AAEME 65
Query: 195 LSVGGLEVKVQESVLRKC----PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRML 250
++ GL ++ Q ++ + + L ++ + + ++V+DEA
Sbjct: 66 EALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEA-HFT 122
Query: 251 DEHFASQMKEIIRLCSRTR-QTMLFSAT 277
D + I + +AT
Sbjct: 123 DPCSVAARGYISTRVEMGEAAAIFMTAT 150
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 45.6 bits (108), Expect = 1e-05
Identities = 22/185 (11%), Positives = 51/185 (27%), Gaps = 41/185 (22%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + ++ + K R ++L PTR + ++Y+ L
Sbjct: 9 LHPGAGKTRRVLPQLVREAVKKRL-----RTVILAPTRVVASEMYE---ALRG------- 53
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ + VQ + L + + + ++DEA H
Sbjct: 54 EPIRYMTPAVQSERTGNEI-VDFMCHSTFTMKLLQGV--RVPNYNLYIMDEA------H- 103
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVND----LVSVSLTRPVRVF-VDNNHEVALNLR 309
++ + V+ + ++ T P ++ ++
Sbjct: 104 -----------FLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDEE 152
Query: 310 QEFVS 314
Sbjct: 153 TRIPD 157
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 43.8 bits (103), Expect = 6e-05
Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 41/184 (22%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + I+ L + R L+L PTR + ++ + L
Sbjct: 193 LHPGAGKTKRILPSIVREALKRRL-----RTLILAPTRVVAAEMEE---ALRGLP----- 239
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ +S + + L ++ + + ++V+DEA H
Sbjct: 240 ---IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEA------H- 287
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVND----LVSVSLTRPVRVF-VDNNHEVALNLR 309
++ ++ V + ++ T P ++ ++
Sbjct: 288 -----------FTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE 336
Query: 310 QEFV 313
+E
Sbjct: 337 REIP 340
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 43.7 bits (103), Expect = 6e-05
Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 41/184 (22%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G+GKT + I++ + Q R VL PTR + ++ + + V
Sbjct: 28 LHPGSGKTRKILPQIIKDAI-----QQRLRTAVLAPTRVVAAEMAE------ALRGLPV- 75
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ + + + + L L + + + + V+DEA H
Sbjct: 76 ----RYQTSAVQREHQGNEIVDVMCHATLTHRLMSPN--RVPNYNLFVMDEA------H- 122
Query: 255 ASQMKEIIRLCSRTRQTMLFSATMTDAVND----LVSVSLTRPVRVF-VDNNHEVALNLR 309
++ + V + ++ T P +++ +L+
Sbjct: 123 -----------FTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQ 171
Query: 310 QEFV 313
E
Sbjct: 172 DEIP 175
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 43.3 bits (102), Expect = 7e-05
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193
TG+GKT M I E +T L++VPT L Q +L F V
Sbjct: 114 VLPTGSGKTHVAMAAINEL---------STPTLIVVPTLAL---AEQWKERLGIFGEEYV 161
Query: 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
G +++ + ++T + + +L+ DE + E
Sbjct: 162 GEFSGR---------IKELKPLTVSTYDSAYVNAEKLG----NRFMLLIFDEVHHLPAES 208
Query: 254 FASQMKEII 262
+ + I
Sbjct: 209 YVQIAQMSI 217
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 39.7 bits (93), Expect = 6e-04
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 32/146 (21%)
Query: 134 CAATGTGKTAAFM-LPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVE 192
TG+GKT + + + L +T L++VPT L Q +L F
Sbjct: 114 VLPTGSGKT--HVAMAAINEL--------STPTLIVVPTLAL---AEQWKERLGIFGEEY 160
Query: 193 VALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE 252
V G +++ + ++T D + + +L+ DE
Sbjct: 161 VGE-FSGRIKELK--------PLTVST----YDSAYVNAEKLGNRFMLLIFDEV-----H 202
Query: 253 HFASQMKEIIRLCSRTRQTMLFSATM 278
H ++ I S + +AT
Sbjct: 203 HLPAESYVQIAQMSIAPFRLGLTATF 228
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 39.5 bits (92), Expect = 0.001
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 18/143 (12%)
Query: 135 AATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVA 194
G GKT + I++ + K R VL PTR + ++ + L
Sbjct: 248 LHPGAGKTRRILPQIIKDAIQKRL-----RTAVLAPTRVVAAEMAE---ALRG------- 292
Query: 195 LSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF 254
+ + + L L + + + + V+DEA
Sbjct: 293 -LPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPL--RVPNYNLFVMDEAHFTDPASI 349
Query: 255 ASQMKEIIRLCSRTRQTMLFSAT 277
A++ R+ + + +AT
Sbjct: 350 AARGYIATRVEAGEAAAIFMTAT 372
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 39.3 bits (92), Expect = 0.002
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 126 LLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQL 185
L A TG GKT+ F L + L+ + R V+ PT L +Q + R+
Sbjct: 69 LRKESFAATAPTGVGKTS-FGLAMS---LFLAL--KGKRCYVIFPTSLLVIQAAETIRKY 122
Query: 186 AQFTSVEVALSV----GGLEVKVQESVLRKCPD--IVIATPGRLLDHLHNTPSFSLSDIE 239
A+ V + G + + +E+ ++ + IVI T L H F
Sbjct: 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDF---- 178
Query: 240 VLVLDEADRML 250
+ +D+ D +L
Sbjct: 179 -IFVDDVDAIL 188
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 38.6 bits (89), Expect = 0.003
Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 20/193 (10%)
Query: 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175
P Q I G + A T GKT + E + + RV+ P + L
Sbjct: 89 PFQDTAISCIDRGESVLVSAHTSAGKTV-----VAEYAIAQSLK-NKQRVIYTSPIKALS 142
Query: 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSL 235
Q Y+ +V L G + + ++ T L L+ +
Sbjct: 143 NQKYRELLAEFG----DVGLMTGDITINPDA-------GCLVMTTEILRSMLYRGSEV-M 190
Query: 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATM--TDAVNDLVSVSLTRP 293
++ ++ DE M D+ +E I L + + SAT+ + + ++P
Sbjct: 191 REVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQP 250
Query: 294 VRVFVDNNHEVAL 306
+ N L
Sbjct: 251 CHIVYTNFRPTPL 263
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 35.5 bits (82), Expect = 0.022
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 135 AATGTGKT--AAFMLPILERLL----YKPRDDQNTRVLVLVPTRELGVQ 177
ATGTGKT A I +L + D + R+L L L
Sbjct: 205 MATGTGKTVVAFQ---ISWKLWSARWNRTGDYRKPRILFLADRNVLVDD 250
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 34.3 bits (78), Expect = 0.056
Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 12/144 (8%)
Query: 138 GTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL-- 195
G GKT + IL + L + RVL++VP + +Q ++ + ++ AL
Sbjct: 180 GLGKTIEAGM-ILHQQLLSGAAE---RVLIIVPE---TL-QHQWLVEMLRRFNLRFALFD 231
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRM-LDEHF 254
E + +VI + ++ ++LV+DEA + E
Sbjct: 232 DERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDA 291
Query: 255 ASQMKEIIR-LCSRTRQTMLFSAT 277
S+ + I L +L +AT
Sbjct: 292 PSREYQAIEQLAEHVPGVLLLTAT 315
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.061
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 6 EEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGK-KKQKRLAKEGKLK 64
EE K +E + S+ + + E +E + + + + K K R+A + +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWN----QRQSEQVEKNKINNRIADKAFYQ 147
Query: 65 QVEAE 69
Q +A+
Sbjct: 148 QPDAD 152
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 32.1 bits (72), Expect = 0.32
Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 116 PIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELG 175
Q + G + A T GKT + E + T+ + P + L
Sbjct: 42 TFQKEAVYHLEQGDSVFVAAHTSAGKTV-----VAEYAIAMAHR-NMTKTIYTSPIKALS 95
Query: 176 VQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSL 235
Q ++ ++ F V + L G +++ + +I T L L+ + +
Sbjct: 96 NQKFRDFKE--TFDDVNIGLITGDVQINPDAN-------CLIMTTEILRSMLYRG-ADLI 145
Query: 236 SDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVR 295
D+E ++ DE + D+ +E+I + + + +L SAT+ + + T+
Sbjct: 146 RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKN 205
Query: 296 VFV 298
++V
Sbjct: 206 IYV 208
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 29.9 bits (68), Expect = 0.79
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 242 VLDEADRMLDEH----FASQMKEIIR-----LCSRTRQTM-----LFSATMTDAVNDLVS 287
+ DE D LD+ A +KE + + + M + +M D V+ +VS
Sbjct: 91 LFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVSKVVS 150
Query: 288 VSLTRPVRV 296
+SL + +++
Sbjct: 151 LSLEKAMKI 159
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 30.2 bits (69), Expect = 0.90
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 182 TRQLAQFTSVEVALSVGGLE--VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIE 239
LA+F S++V ++ +++ E +L + L L+ P I+
Sbjct: 217 PFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIK 276
Query: 240 VLVLDEADRMLDEH 253
L EA +L
Sbjct: 277 RLKYTEAIEILRSK 290
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 29.1 bits (64), Expect = 2.0
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 15/168 (8%)
Query: 70 EYEENEGGKEFFEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR 129
+ KE E S + ++ I P Q + L+ R
Sbjct: 80 WIDPQINEKEELSRKDFDEWLSKLEIYSGNKR----------IEPHWYQKDAVFEGLVNR 129
Query: 130 DICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFT 189
T G++ I L ++ ++L++VPT L Q+ F+
Sbjct: 130 RRILNLPTSAGRSL-----IQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS 184
Query: 190 SVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSD 237
+ GG + T + + ++D
Sbjct: 185 HAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMND 232
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 29.1 bits (66), Expect = 2.1
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 182 TRQLAQFTSVEVALS-VGGLE--VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDI 238
+R L ++ S++V + + E ++++E++L + + + T G + L T DI
Sbjct: 208 SRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDI 267
Query: 239 EVLVLDEADRMLDEHF 254
L EA R+L E
Sbjct: 268 PRLTHAEAKRILKEEL 283
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 29.3 bits (66), Expect = 2.2
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
+ + TG+GKT + L+ ++ +VL LV T QV + R L+
Sbjct: 22 SYGVALESPTGSGKTIMALKSALQYSS-----ERKLKVLYLVRTNSQEEQVIKELRSLSS 76
Query: 188 FTSVEVAL 195
+
Sbjct: 77 TMKIRAIP 84
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.1 bits (64), Expect = 2.5
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 1 DDSSDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQ 54
E E++ D + EE+D D + + + D+ R + + KQ
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQ 416
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Listeria monocytogenes str}
Length = 283
Score = 28.4 bits (63), Expect = 3.2
Identities = 4/40 (10%), Positives = 10/40 (25%)
Query: 225 DHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRL 264
+H + F + M K++ +
Sbjct: 39 EHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHI 78
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 27.9 bits (63), Expect = 4.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 239 EVLVLDEADRMLDEHFASQMKEIIR 263
+VL+LDE LD S++ +++
Sbjct: 163 KVLILDEPTAGLDPMGVSEIMKLLV 187
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 27.6 bits (62), Expect = 5.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 239 EVLVLDEADRMLDEHFASQMKEIIR 263
++L+LDE LD + + I+
Sbjct: 158 DILILDEPLVGLDREGKTDLLRIVE 182
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 27.7 bits (62), Expect = 7.4
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 235 LSDIEVLVLDEADRMLD-EHFASQMKEIIRLCSRTRQTMLF 274
++ ++DE LD E K I R ++T
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.3 bits (61), Expect = 7.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 22/79 (27%)
Query: 242 VLDEADRMLDEH----FASQMKEIIRLCSRTRQ---------TM-----LFSATMTDAVN 283
VLDE D LD++ F +KE S+ Q M L TM + V+
Sbjct: 246 VLDEVDSPLDDYNAERFKRLLKEN----SKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301
Query: 284 DLVSVSLTRPVRVFVDNNH 302
+V V + + + V ++H
Sbjct: 302 AIVPVEVEKILEVGSHHHH 320
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A
{Saccharomyces cerevisiae}
Length = 800
Score = 27.4 bits (61), Expect = 8.0
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 4 SDEEGNKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNIKNRQKLIGKKKQKRLAKEGKL 63
D +++D E E++V P+D D + N + K +EGK+
Sbjct: 5 DDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHR-------LKTSLEEGKV 57
Query: 64 KQVEAEEYEENEGGKEFF 81
+ + + EF
Sbjct: 58 LEKTVPDLNNCKENYEFL 75
>1nh2_C Transcription initiation factor IIA large chain;
transcription/DNA; HET: 5IU; 1.90A {Saccharomyces
cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 25.7 bits (56), Expect = 8.2
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 9 NKEDKEDNEGSEEDDVDAEEDFALPDDEMKHDNI 42
+ D GSE DD D + + +++ +N+
Sbjct: 3 SALLDTDEVGSELDDSDDDYLISEGEEDGPDENL 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,113,430
Number of extensions: 318525
Number of successful extensions: 1095
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 106
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)