RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3143
(337 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 173 bits (440), Expect = 9e-54
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 7/211 (3%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGR-DICGCAATGTGKTAAFML 147
E +F+++NLS +L AI + PT IQ IP+ L +I A TG+GKTA+F +
Sbjct: 2 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAI 61
Query: 148 PILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQES 207
P++E + + ++L PTREL +QV L ++++A GG + Q
Sbjct: 62 PLIELVNENNGIEA----IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L+ +IV+ TPGR+LDH+ N + +L +++ +LDEAD ML+ F +++I+ C++
Sbjct: 118 ALKN-ANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 175
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
++ +LFSATM + +L + +
Sbjct: 176 DKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 162 bits (411), Expect = 2e-49
Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Query: 81 FEDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTG 140
FE + V+ +F M L LL+ I A + P+ IQ I + GRD+ + +GTG
Sbjct: 7 FETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 66
Query: 141 KTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGL 200
KTA F + +L+ + T+ L+L PTREL VQ+ + L + +V+ +GG
Sbjct: 67 KTATFSISVLQC---LDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 123
Query: 201 EVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
V L +V TPGR+ D S I++LVLDEAD ML++ F Q+ +
Sbjct: 124 NVGEDIRKLDYGQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYD 182
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+ R Q +L SAT+ + ++ + +T P+R+ V
Sbjct: 183 VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 159 bits (404), Expect = 2e-48
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 10/217 (4%)
Query: 87 VEEN-----SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
++ N F M L LL+ + + P+ IQ I + G D+ A +GTGK
Sbjct: 1 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 60
Query: 142 TAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
T F + L+R+ + + L+L PTREL +Q+ +V LA ++V +GG
Sbjct: 61 TGTFSIAALQRIDTSVK---APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 117
Query: 202 VKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEI 261
LR IV+ TPGR+ D+ F I++ +LDEAD ML F Q+ +I
Sbjct: 118 FVEDAEGLRD-AQIVVGTPGRVFDN-IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 175
Query: 262 IRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
L T Q +L SATM + V ++ + + PVR+ V
Sbjct: 176 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 158 bits (400), Expect = 5e-48
Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
S F L LL+AI + +P+ +Q IP A+LG D+ A +G GKTA F+L L
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV-ALSVGGLEVKVQESVL 209
+ VLV+ TREL Q+ + + +++ A+ GGL +K E VL
Sbjct: 61 Q---QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 117
Query: 210 RKC-PDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHF-ASQMKEIIRLCSR 267
+K P IV+ TPGR+L S +L I+ +LDE D+ML++ ++EI R+
Sbjct: 118 KKNCPHIVVGTPGRILAL-ARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
+Q M+FSAT++ + + + P+ +FV
Sbjct: 177 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 156 bits (394), Expect = 7e-47
Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 87 VEEN-----SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
+E N SF MNLS LL+ I A + P+ IQ I + G D+ A +GTGK
Sbjct: 3 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGK 62
Query: 142 TAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLE 201
TA F + IL+++ D + T+ LVL PTREL Q+ +V L + +GG
Sbjct: 63 TATFAISILQQIE---LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 119
Query: 202 VKVQESVLR-KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKE 260
V+ + L+ + P I++ TPGR+ D L N S I++ VLDEAD ML F Q+ +
Sbjct: 120 VRAEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 178
Query: 261 IIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
I + + Q +L SATM V ++ + P+R+ V
Sbjct: 179 IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 153 bits (387), Expect = 1e-45
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 11/227 (4%)
Query: 82 EDAPPVEENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGK 141
D +F ++ L + I +Y PTPIQ IP L RDI CA TG+GK
Sbjct: 12 PDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGK 71
Query: 142 TAAFMLPILERLLYKPRDDQN------TRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL 195
TAAF++PI+ L+ + + Q + L+L PTREL +Q+ +++ + T + +
Sbjct: 72 TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV 131
Query: 196 SVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFA 255
GG + Q ++ +++ATPGRL+D + SL + +VLDEADRMLD F
Sbjct: 132 VYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDMGFE 190
Query: 256 SQMKEIIRLCS----RTRQTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
Q+++II + RQT++FSAT + L + L + + V
Sbjct: 191 PQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 149 bits (377), Expect = 1e-44
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 5/209 (2%)
Query: 89 ENSSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLP 148
+ + F L R LL I + + P+PIQ +IP+AL GRDI A GTGK+ A+++P
Sbjct: 1 KGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 149 ILERLLYKPRDDQNTRVLVLVPTRELGVQVYQ-VTRQLAQFTSVEVALSVGGLEVKVQES 207
+LERL K N + +V+VPTREL +QV Q + +V + GG ++
Sbjct: 61 LLERLDLKK---DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 208 VLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSR 267
L +VIATPGR+LD + ++++VLDEAD++L + F M++II +
Sbjct: 118 RLDDTVHVVIATPGRILDL-IKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176
Query: 268 TRQTMLFSATMTDAVNDLVSVSLTRPVRV 296
RQ +L+SAT +V ++ L +P +
Sbjct: 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 145 bits (366), Expect = 6e-43
Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 4/208 (1%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
++F L R LL I + P+PIQ IPVA+ GRDI A GTGKTAAF++P L
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 151 ERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLR 210
E + L++VPTREL +Q QV R L + + ++ GG ++ L
Sbjct: 61 E---KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN 117
Query: 211 KCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQ 270
+ I++ TPGR+LD + LSD + ++DEAD+ML F + +++I+ T Q
Sbjct: 118 ETVHILVGTPGRVLDL-ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 176
Query: 271 TMLFSATMTDAVNDLVSVSLTRPVRVFV 298
++LFSAT V + + L +P + +
Sbjct: 177 SLLFSATFPLTVKEFMVKHLHKPYEINL 204
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 130 bits (328), Expect = 2e-37
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 2/209 (0%)
Query: 91 SSFHQMNLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPIL 150
+ F + +++AI L + PT IQ IP AL G + G + TGTGKT A++LPI+
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 151 ERLL-YKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
E++ + ++ + ++T+ + + +GG + + L
Sbjct: 61 EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTR 269
P IVI TPGR+ D + +LV+DEAD MLD F + + +I +
Sbjct: 121 NVQPHIVIGTPGRINDFIREQALDV-HTAHILVVDEADLMLDMGFITDVDQIAARMPKDL 179
Query: 270 QTMLFSATMTDAVNDLVSVSLTRPVRVFV 298
Q ++FSAT+ + + + + P V V
Sbjct: 180 QMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 119 bits (299), Expect = 1e-32
Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 28/190 (14%)
Query: 114 PTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRE 173
P IQ L A TG GKT+ + L L R V+ PT
Sbjct: 44 PRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK------RCYVIFPTSL 97
Query: 174 LGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL------RKCPDIVIATPGRLLDHL 227
L +Q + R+ A+ V +G ++ + + IVI T L H
Sbjct: 98 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY 157
Query: 228 HNTPSFSLSDIEVLVLDEADRMLDEH-----------FASQMKEIIRLCSRTRQTMLFSA 276
L + + +D+ D +L F +K + M+ +A
Sbjct: 158 RE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTA 212
Query: 277 TMTDAVNDLV 286
T +
Sbjct: 213 TAKKGKKAEL 222
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 103 bits (258), Expect = 4e-27
Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 18/215 (8%)
Query: 91 SSFHQMNLSRPLLKAI-GALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPI 149
+ +NL + + Y P Q I L GRD TG GK+ + +P
Sbjct: 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA 61
Query: 150 LERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVL 209
L +V+ P L + + + +++V
Sbjct: 62 LLLN---------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 210 RKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDE--HFASQMKEIIRLCSR 267
++ P RL+ + + + +L +DEA + F + + +L R
Sbjct: 113 TGQIRLLYIAPERLMLD-NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171
Query: 268 --TRQTMLFSATMTDAVNDLV--SVSLTRPVRVFV 298
T M +AT D + + L P+ + +
Sbjct: 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 96.1 bits (238), Expect = 2e-23
Identities = 24/201 (11%), Positives = 57/201 (28%), Gaps = 25/201 (12%)
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
R G GKT ++ I+ + + R L+L PTR + ++ +
Sbjct: 9 KRLTIMDLHPGAGKTKRYLPAIVREAI-----KRGLRTLILAPTRVVAAEMEE------- 56
Query: 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247
+ + + + + L + + ++++DEA
Sbjct: 57 ----ALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRV--PNYNLIIMDEAH 110
Query: 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDL-------VSVSLTRPVRVFVDN 300
A++ R+ + +AT + + + P R +
Sbjct: 111 FTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSG 170
Query: 301 NHEVALNLRQEFVSFSNIDEV 321
+ V + +I
Sbjct: 171 HEWVTDFKGKTVWFVPSIKAG 191
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 93.5 bits (231), Expect = 3e-23
Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 14/188 (7%)
Query: 97 NLSRPLLKAIGALNYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYK 156
++S + + P QA + G+++ T GKT + ++ +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 157 PRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIV 216
+ L +VP R L + Y+ ++ + + DI+
Sbjct: 69 GKS------LYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY----ESRDEHLGDCDII 118
Query: 217 IATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMK---EIIRLCSRTRQTML 273
+ T + + N + + + LV+DE + E + ++ +R ++ + +
Sbjct: 119 VTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIG 177
Query: 274 FSATMTDA 281
SAT +
Sbjct: 178 LSATAPNV 185
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 78.3 bits (191), Expect = 1e-17
Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 9/201 (4%)
Query: 110 NYIYPTPIQAATIPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLV 169
+ I P Q + TG GKT M+ RL +VL+L
Sbjct: 6 DLIQPRIYQEVIYA-KCKETNCLIVLPTGLGKTLIAMMIAEYRL-----TKYGGKVLMLA 59
Query: 170 PTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHN 229
PT+ L +Q + R+L ++ G + + + IV ++
Sbjct: 60 PTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI--ENDLL 117
Query: 230 TPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVS 289
SL D+ ++V DEA R + + + + ++ + +A+ ++ V
Sbjct: 118 AGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV- 176
Query: 290 LTRPVRVFVDNNHEVALNLRQ 310
+ ++ E + ++R
Sbjct: 177 INNLGIEHIEYRSENSPDVRP 197
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 36.4 bits (83), Expect = 0.001
Identities = 18/146 (12%), Positives = 35/146 (23%), Gaps = 24/146 (16%)
Query: 134 CAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEV 193
A TG+GK+ + +VLVL P+ + +
Sbjct: 14 HAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKA-------- 56
Query: 194 ALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEH 253
V + S ++++ DE D
Sbjct: 57 ------HGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECH-STDAT 109
Query: 254 FASQMKEIIRLCSRTRQTMLFSATMT 279
+ ++ ++ AT T
Sbjct: 110 SILGIGTVLDQAETAGARLVVLATAT 135
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 31.6 bits (70), Expect = 0.050
Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 18/150 (12%)
Query: 128 GRDICGCAATGTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQ 187
G G GKT F+ IL + R LVL PTR + ++ + L
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECAR-----RRLRTLVLAPTRVVLSEMKEAFHGLDV 61
Query: 188 FTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHLHNTPSFSLSDIEVLVLDEAD 247
+ + I L + + EV+++DEA
Sbjct: 62 K-----------FHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRV--VNWEVIIMDEAH 108
Query: 248 RMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
+ A++ R + T+L +AT
Sbjct: 109 FLDPASIAARGWAAHRARANESATILMTAT 138
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 30.1 bits (68), Expect = 0.29
Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 41/179 (22%)
Query: 124 VALLGRDICGCAATGTGKTAAFMLPILERLLYKP------RDDQNTRVLVLVPTRELGVQ 177
VA +G +G GK+ ++ ++ R Y D N + + R +
Sbjct: 47 VAFVGM-------SGGGKST--LINLIPRF-YDVTSGQILIDGHNIKDFLTGSLRNQ-IG 95
Query: 178 VYQVTRQLAQFTSVE-VALSVGGLEVKVQESVLRKC-----PDIVIATPGRLLDHLHNTP 231
+ Q L T E + L G E V+ D ++ P +
Sbjct: 96 LVQQDNILFSDTVKENILL---GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 152
Query: 232 S-FS-------------LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276
S L++ +L+LDEA LD S ++E + + S+ R T L A
Sbjct: 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR-TTLIVA 210
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.9 bits (67), Expect = 0.42
Identities = 12/80 (15%), Positives = 26/80 (32%)
Query: 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSVSLTRPV 294
D ++ +LD LD Q+ E +T + + + + + +
Sbjct: 174 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 233
Query: 295 RVFVDNNHEVALNLRQEFVS 314
+ +LR +F S
Sbjct: 234 SSYFYGTFSELQSLRPDFSS 253
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 29.5 bits (66), Expect = 0.47
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSATMTDAVNDLVSV 288
L + E+ VLD+ +DE ++ + I + + ++ S+ + D+
Sbjct: 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNEN 194
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.7 bits (64), Expect = 0.71
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 227 LHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276
L TP + ++L+LDE LD S + +I+ + ++ S+
Sbjct: 141 LQITPQANP-AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSS 189
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.6 bits (62), Expect = 0.96
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLF 274
+ +I +L+LDE LDE ++ I+ + ++
Sbjct: 298 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 339
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.9 bits (62), Expect = 1.4
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 239 EVLVLDEADRMLDEHFASQ-MKEIIRLCSRTRQTMLF 274
+++ D+ LD + M+ + +L +T++
Sbjct: 165 PIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 2.1
Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 15/170 (8%)
Query: 122 IPVALLGRDICGCAATGTGKTAAFMLPILERLLYKPR--------------DDQNTRVLV 167
+P R + ATGTGK+ LL R +L
Sbjct: 44 MPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILN 103
Query: 168 LVPTRELGVQVYQVTRQLAQFTSVEVALSVGGLEVKVQESVLRKCPDIVIATPGRLLDHL 227
R G + R + +++ G + +E ++ T +L
Sbjct: 104 PYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASY-GRLLLRETAKKLALIG 162
Query: 228 HNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSAT 277
+ + D+ L+ A + S+ + F +
Sbjct: 163 TPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLS 212
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.4 bits (59), Expect = 2.2
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLF 274
+I +L+LDE LDE ++ I+ + ++
Sbjct: 223 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 262
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia
coli [TaxId: 562]}
Length = 100
Score = 25.9 bits (57), Expect = 3.0
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 37 MKHDNIKNRQKLIGKKKQKRLAKEGKLKQVEAEEYEENEGGKEFFEDAPPVEENSSFHQM 96
MK +K R L K KR + + V A + E+ + P +SS +
Sbjct: 5 MKAREVK-RVALADKYFAKRAELKAIISDVNASD-EDRWNAVLKLQTLPR---DSSPSRQ 59
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 27.0 bits (58), Expect = 3.7
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 233 FSLSDIEVLVLDEADRMLDEHFASQMKEIIR-LCSRTRQ 270
S VLDE D LD ++ IR + Q
Sbjct: 350 NSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ 388
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 26.7 bits (59), Expect = 3.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 235 LSDIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLFSA 276
L D +L+LDEA LD ++ + + R T L A
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQKNR-TSLVIA 208
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 25.9 bits (56), Expect = 4.5
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 138 GTGKTAAFMLPILERLLYKPRDDQNTRVLVLVPTRELGVQVYQVTRQLAQFTSVEVAL-- 195
GTG TA + + L R L + V T EL + + V++A+
Sbjct: 27 GTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL-AKREGIPLVDLPPEGVDLAIDG 85
Query: 196 ------SVGGLEVKVQESVLRKCPD------IVIATPGRLLDHLHNTPSFSLSDIEVL 241
+ ++ + K + IVIA + + L + + +
Sbjct: 86 ADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLLFVGMATRA-LVAG 142
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 25.9 bits (56), Expect = 5.5
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 221 GRLLDHLHNTPSFSLSDIEVLVLDEADRMLDEHFASQMKEII 262
+ + L E L+EA +L E F II
Sbjct: 110 VSVFNILDEPTLNHRVKWEYYPLEEASELLSEFFKKLRNNII 151
>d1mrja_ d.165.1.1 (A:) alpha-Trichosanthin {Mongolian snake gourd
(Trichosanthes kirilowii Maxim.) [TaxId: 3677]}
Length = 247
Score = 26.0 bits (57), Expect = 6.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 306 LNLRQEFVSFSNIDEVRLYNVLGLMLLREN 335
+N + + V+ +N+D + + + L+L R N
Sbjct: 216 INAQNQRVTITNVDAGVVTSNIALLLNRNN 245
>d1mrga_ d.165.1.1 (A:) alpha-Momorcharin (momordin) {Bitter gourd
(Momordica charantia) [TaxId: 3673]}
Length = 246
Score = 25.7 bits (56), Expect = 8.2
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 307 NLRQEFVSFSNIDEVRLYNVLGLMLLREN 335
+ + V +N+ + + + L+L N
Sbjct: 217 DNKGNRVQITNVTSKVVTSNIQLLLNTRN 245
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 25.6 bits (56), Expect = 8.7
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 237 DIEVLVLDEADRMLDEHFASQMKEIIRLCSRTRQTMLF 274
+ +VL+ DE LD ++ I++ + +TM+
Sbjct: 167 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,197,918
Number of extensions: 56193
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 40
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.2 bits)